RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3715
(179 letters)
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin
fold, transferase; HET: PGE; 2.50A {Pyrobaculum
aerophilum} SCOP: d.58.6.1
Length = 195
Score = 115 bits (289), Expect = 6e-33
Identities = 40/173 (23%), Positives = 59/173 (34%), Gaps = 52/173 (30%)
Query: 6 LHLLYIVIHKIMAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCVS 65
+H + I ++ P E+T L++KPD V RGLV II RF+ G K+VA+K V
Sbjct: 1 MHAINIAFFDLIM-PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVK------ 53
Query: 66 FLEKKSACCRMVSSVPAYEISGKLLVGITYSTVLGHLNLETSECPLFHIDYELFPAERQF 125
+ + Y +
Sbjct: 54 ---------------------------ASPEEIERF--------------Y----PSSEE 68
Query: 126 YCLNNYLTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+ + K E+GI + + LVKYM+SGP V MV
Sbjct: 69 WLQSAGQKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMV 121
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism,
apoptosis, transferase, struc genomics, structural
genomics consortium, SGC; HET: ADP; 2.30A {Homo
sapiens} SCOP: d.58.6.1
Length = 169
Score = 104 bits (262), Expect = 4e-29
Identities = 34/61 (55%), Positives = 40/61 (65%)
Query: 1 MICTVLHLLYIVIHKIMAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWV 60
MIC VL + + ERTFL +KPDGVQR LVG I++RFE KGFKLVA+K V
Sbjct: 1 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA 60
Query: 61 S 61
S
Sbjct: 61 S 61
Score = 75.0 bits (185), Expect = 1e-17
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+ SEELL++HY++L +PF+ LVKYM+SGPVV MV
Sbjct: 57 LVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMV 94
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta
sandwich, ATP-binding, magnesium, metal-B
mitochondrion; 3.10A {Saccharomyces cerevisiae}
Length = 161
Score = 95.0 bits (237), Expect = 2e-25
Identities = 28/48 (58%), Positives = 34/48 (70%)
Query: 14 HKIMAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
H M+ ERTF+ +KPDGVQRGLV I+ RFE KG+KLVA+K V
Sbjct: 6 HHHMSSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKAD 53
Score = 74.9 bits (185), Expect = 9e-18
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+ ++LL+QHY++ KPFFP +V +M SGP++ V
Sbjct: 49 LVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATV 86
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP;
2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB:
2az1_A 2zua_A
Length = 164
Score = 93.8 bits (234), Expect = 6e-25
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 17 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
M + ERTF+M+KPDGVQRGL+G+I+ R E KG K+V KF+ +
Sbjct: 4 MTDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRID 48
Score = 74.6 bits (184), Expect = 1e-17
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
EEL +HY++ KPFF GLV +++SGPV MV
Sbjct: 44 FMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMV 81
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer,
NM23 GEN, hexamer, activator, oncogene, ATP-binding,
cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo
sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R
3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A*
1nsq_A* 1ndl_A*
Length = 151
Score = 91.4 bits (228), Expect = 4e-24
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+ IKPDGVQRGLVG IIKRFE KGF+LVAMKF+ S
Sbjct: 4 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRAS 43
Score = 75.3 bits (186), Expect = 5e-18
Identities = 27/38 (71%), Positives = 29/38 (76%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
SEE LKQHY DL +PFFPGLVKYM+SGPVV MV
Sbjct: 39 FLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMV 76
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition
state mimic, transition state analog, transferas; HET:
ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Length = 190
Score = 92.5 bits (230), Expect = 4e-24
Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 17 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
M+ ++T ++KPDGV+RGL+G+++ RFE G K+VA K + V
Sbjct: 22 MSMLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVD 66
Score = 64.7 bits (158), Expect = 1e-13
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 141 MGIPSEELLKQHYS-----DLATKPFFPGLVKYMSSGPVVPMV 178
M I E L K+HY ++ + L+K++S+ PV V
Sbjct: 62 MLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFTFV 104
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, giardiasis; 2.65A {Giardia lamblia}
Length = 155
Score = 91.1 bits (227), Expect = 6e-24
Identities = 32/42 (76%), Positives = 35/42 (83%)
Query: 20 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
+ERTFLM+KPDGVQRGLVG II RFE +GFKLVAMKF S
Sbjct: 6 ARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPS 47
Score = 74.9 bits (185), Expect = 8e-18
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+PS+ L+++HY + A +PFF GL K++SSGPV MV
Sbjct: 43 FFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMV 80
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative,
structural genomics, SGPP; 3.05A {Plasmodium
falciparum} SCOP: d.58.6.1
Length = 157
Score = 91.1 bits (227), Expect = 6e-24
Identities = 27/40 (67%), Positives = 35/40 (87%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
E++F+MIKPDGVQRGLVG IIKRFE KG+KL+A+K + +
Sbjct: 10 EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPT 49
Score = 74.9 bits (185), Expect = 9e-18
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
M P+EE+LK+HY +L+ +PFF LV Y+S GPVV MV
Sbjct: 45 MLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMV 82
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid,
seattle structural genomics center for infect disease,
babesiosis; 2.50A {Babesia bovis}
Length = 156
Score = 90.7 bits (226), Expect = 7e-24
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERT++M+KPDGVQRGL+G I+KRFE KG KL+A KF +
Sbjct: 10 ERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPT 49
Score = 74.9 bits (185), Expect = 8e-18
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
P+ +++ QHY + KPFF L ++S GPV M+
Sbjct: 45 FEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMI 82
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding,
transferase, tumor suppressor; 2.10A {Homo sapiens}
Length = 172
Score = 91.2 bits (227), Expect = 8e-24
Identities = 30/40 (75%), Positives = 34/40 (85%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+ IKPDGVQRGLVG IIKRFE KGF+LV +KF+ S
Sbjct: 25 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQAS 64
Score = 75.4 bits (186), Expect = 8e-18
Identities = 25/38 (65%), Positives = 28/38 (73%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
SE+LLK+HY DL +PFF GLVKYM SGPVV MV
Sbjct: 60 FMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMV 97
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB:
4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A*
3ngu_A*
Length = 161
Score = 90.7 bits (226), Expect = 9e-24
Identities = 28/48 (58%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 14 HKIMAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
H M ERTF+ +KPDGVQR LVG IIKRFE+KG+KLV +K + +
Sbjct: 6 HHHMP--SERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPT 51
Score = 74.2 bits (183), Expect = 2e-17
Identities = 24/38 (63%), Positives = 29/38 (76%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+ P+EE KQHY DLA+KPF+ GLV Y SSGP+V MV
Sbjct: 47 LLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMV 84
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding,
metal-binding, phosphoprotein, nucleotide metabolism,
cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Length = 148
Score = 90.3 bits (225), Expect = 9e-24
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
E+TFLM+KPDGVQR +G I+ RFE KGF+LV K + V+
Sbjct: 2 EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVT 41
Score = 74.5 bits (184), Expect = 1e-17
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+ + E+ QHY++ KPFF LV +++SGPV MV
Sbjct: 37 LMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMV 74
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians,
transferase; 2.20A {Virgibacillus halodenitrificans}
SCOP: d.58.6.1
Length = 150
Score = 90.3 bits (225), Expect = 9e-24
Identities = 27/41 (65%), Positives = 32/41 (78%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
KERTFLM+KPDGVQR LVG ++KRFE KG KL K + +S
Sbjct: 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVIS 42
Score = 74.5 bits (184), Expect = 1e-17
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+ + S++ HY++L PFF GLV +SGPV MV
Sbjct: 38 LMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMV 75
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza
sativa} SCOP: d.58.6.1
Length = 150
Score = 89.9 bits (224), Expect = 1e-23
Identities = 27/40 (67%), Positives = 33/40 (82%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
E++F+MIKPDGVQRGL+G+II RFE KGF L MKF+ V
Sbjct: 3 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVE 42
Score = 74.9 bits (185), Expect = 7e-18
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+QHY+DL+ KPFFPGLV+Y+ SGPVV MV
Sbjct: 38 FMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMV 75
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A
{Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Length = 153
Score = 89.9 bits (224), Expect = 1e-23
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
E T++M+KPDG+QRGLVG II RFE KGFKL+ +K
Sbjct: 6 EETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCP 45
Score = 74.5 bits (184), Expect = 1e-17
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
M +EL ++HY DL+ K FFP L++Y++SGPVV M
Sbjct: 41 MFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMA 78
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate,
transferase; 2.60A {Mycobacterium tuberculosis} SCOP:
d.58.6.1
Length = 136
Score = 89.5 bits (223), Expect = 1e-23
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERT ++IKPDG++R L+G II R E KG + A++ VS
Sbjct: 3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVS 42
Score = 73.3 bits (181), Expect = 2e-17
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+ S EL QHY++ KPFF L+++++SGPVV +
Sbjct: 38 LRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAI 75
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate,
transferase; 2.40A {Arabidopsis thaliana} SCOP:
d.58.6.1
Length = 149
Score = 89.9 bits (224), Expect = 1e-23
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
E+TF+MIKPDGVQRGL+G +I RFE KGF L +K + V
Sbjct: 2 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVE 41
Score = 74.9 bits (185), Expect = 8e-18
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+ ++HY DL++K FF GLV Y+ SGPVV M+
Sbjct: 37 LISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMI 74
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Length = 137
Score = 89.5 bits (223), Expect = 1e-23
Identities = 26/40 (65%), Positives = 34/40 (85%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+MIKPDGV+RGLVG I+ RFE KGF++ A+K + +S
Sbjct: 2 ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQIS 41
Score = 72.9 bits (180), Expect = 3e-17
Identities = 20/38 (52%), Positives = 30/38 (78%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+ S+EL ++HY++ KPFFPGLV++++SGPVV MV
Sbjct: 37 LMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMV 74
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN
hexamer structure, ATP-binding, magnesium, metal-
nucleotide metabolism; HET: TNM TNV; 1.65A
{Dictyostelium discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A*
1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A*
1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A*
1hhq_A 1lwx_A* 1npk_A ...
Length = 155
Score = 89.5 bits (223), Expect = 2e-23
Identities = 25/40 (62%), Positives = 30/40 (75%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTFL +KPDGV RGLVG II R+E KGF LV +K + +
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPT 48
Score = 74.1 bits (183), Expect = 2e-17
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+P+++L + HY++ +PFF GLV +++SGPVV MV
Sbjct: 44 QLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMV 81
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP;
1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R*
2nck_R 3pj9_A
Length = 144
Score = 89.5 bits (223), Expect = 2e-23
Identities = 21/40 (52%), Positives = 31/40 (77%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERT +IKPDG+++G++G II RFE+KG K VA++ +S
Sbjct: 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLS 42
Score = 72.5 bits (179), Expect = 6e-17
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+ S+ + Y+ +PFF LV++M SGPVV MV
Sbjct: 38 LQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMV 75
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial,
killer-O transferase; 2.40A {Homo sapiens} SCOP:
d.58.6.1
Length = 162
Score = 90.0 bits (224), Expect = 2e-23
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 15 KIMAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
M +ERT + +KPDGVQR LVG++I+RFE +GF LV MK +
Sbjct: 19 SHMGT-RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAP 64
Score = 73.4 bits (181), Expect = 4e-17
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
M E +L +HY DL KPF+P L++YMSSGPVV MV
Sbjct: 60 MLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMV 97
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer,
signaling protein,transferase; 1.62A {Escherichia coli}
Length = 142
Score = 89.1 bits (222), Expect = 2e-23
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF +IKP+ V + ++GNI RFE GFK+V K + ++
Sbjct: 3 ERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLT 42
Score = 72.1 bits (178), Expect = 6e-17
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
M + E + Y++ KPFF GLV++M+SGP+V V
Sbjct: 38 MLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSV 75
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta
protein family; HET: ADP; 2.22A {Staphylococcus aureus
subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Length = 157
Score = 89.5 bits (223), Expect = 2e-23
Identities = 25/40 (62%), Positives = 28/40 (70%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTFLMIKPD VQR L+G +I R E KG KLV K + V
Sbjct: 2 ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVP 41
Score = 74.5 bits (184), Expect = 1e-17
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+ EL + HY + KPF+ L+ +++S PV MV
Sbjct: 37 LMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMV 74
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, encepha cuniculi, structural
genomics; 2.08A {Encephalitozoon cuniculi}
Length = 151
Score = 89.1 bits (222), Expect = 2e-23
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+MIKPD ++R L+ II+RFE+KG L A K V
Sbjct: 6 ERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPK 45
Score = 73.3 bits (181), Expect = 3e-17
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
IP E+L+ HYS L++ PFF +V+ M SG V+ MV
Sbjct: 41 CVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMV 78
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum
sativum} SCOP: d.58.6.1
Length = 182
Score = 90.0 bits (224), Expect = 2e-23
Identities = 26/40 (65%), Positives = 31/40 (77%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+ IKPDGVQRGL+ II RFE KGFKLV +K + +
Sbjct: 33 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPT 72
Score = 74.3 bits (183), Expect = 3e-17
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+ IP+++ +QHY DL +PFF GL ++SSGPV+ MV
Sbjct: 68 VLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMV 105
>4ek2_A Nucleoside diphosphate kinase; seattle structural genomics center
for infectious disease, S DAMP, niaid; HET: DA; 2.00A
{Burkholderia thailandensis} PDB: 4dut_A*
Length = 145
Score = 88.0 bits (219), Expect = 7e-23
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERT +IKPD V + ++G I RFE+ G K+VA + +S
Sbjct: 8 ERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLS 47
Score = 71.0 bits (175), Expect = 2e-16
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
M S ++ Y+ A +PFF LV++M SGPV+ V
Sbjct: 43 MAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQV 80
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural
genomics, NPPSFA, NAT project on protein structural and
functional analyses; HET: GDP; 1.70A {Pyrococcus
horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A*
2dy9_A* 2dya_A*
Length = 160
Score = 88.0 bits (219), Expect = 8e-23
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERT ++IKPD V RGL+G II RFE KG K+V MK +W+
Sbjct: 8 ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWID 47
Score = 72.2 bits (178), Expect = 1e-16
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
M EL ++HY + KPFF L+ Y++ PVV MV
Sbjct: 43 MIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMV 80
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A
{Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Length = 142
Score = 87.6 bits (218), Expect = 8e-23
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERT +++KPD +++G +G I+ RF +GF++ A+K +
Sbjct: 4 ERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFT 43
Score = 70.3 bits (173), Expect = 3e-16
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 141 MGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
M + E + Y +PFF LV++MSSGPVV V
Sbjct: 39 MFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAV 76
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase;
phosphotransferase nucleotide binding, ATP-binding,
magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba
polyphaga mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A*
3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A*
3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A*
3eic_A* 3evw_A* 3gpa_A* ...
Length = 146
Score = 86.0 bits (214), Expect = 3e-22
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 15 KIMAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVW 59
K +RT ++IKPD +R LV I+ R E K FK+V+MKF
Sbjct: 2 KKAG--LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS 44
Score = 71.4 bits (176), Expect = 2e-16
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 136 KLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
K ++ L++QHY + + + +F +M SGP++ +V
Sbjct: 41 KFWSKA---PRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIV 80
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.13
Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 60/198 (30%)
Query: 19 EPKERTFLMIKPDGVQRGLVG-NIIKRFED-----------KGFK--LVAMKFVWVSFCV 64
E ++ I P+ R NI R K ++ L+ + V +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 65 -SFLEKKSACCRM------------VSSVPAYEIS-GKLLVGITYSTVLG----HLNLET 106
+F C++ +S+ IS + +T V +L+
Sbjct: 260 NAFNLS----CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 107 SECPL-------FHIDYELFPAE-RQFYCLNNY---LTTCKLLT--EMGI----PSEELL 149
+ P + + R + + KL T E + P+E
Sbjct: 316 QDLPREVLTTNPRRLS--IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE--Y 371
Query: 150 KQHYSDLATKPFFPGLVK 167
++ + L+ FP
Sbjct: 372 RKMFDRLS---VFPPSAH 386
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein,
structural genomics, NPPSFA; 1.98A {Homo sapiens}
Length = 143
Score = 27.5 bits (62), Expect = 1.5
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 10/39 (25%)
Query: 20 PKERTFLMI----KPDGVQRGLVGNIIKRFEDKGFKLVA 54
P++ + I +P + + ++ ++GFKL A
Sbjct: 23 PQKGILIGIQQSFRPRFLG------VAEQLHNEGFKLFA 55
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 3.1
Identities = 26/123 (21%), Positives = 38/123 (30%), Gaps = 43/123 (34%)
Query: 35 RGLVGNIIKRFEDKGFKLVAMKFVWVSFC------VSFLEKKSACCRMVSSVPAYEISGK 88
LVG++IK + +L+ + +LE S + P +
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS-------NTPDKDY--- 230
Query: 89 LLVGITYSTVLGHLNLETSECPLFHIDYELFPAERQFYCLNNYLTTCKLLTEMGIPSEEL 148
L+ I S CPL I L +Y+ T KLL G EL
Sbjct: 231 -LLSIPIS------------CPL--I---------GVIQLAHYVVTAKLL---GFTPGEL 263
Query: 149 LKQ 151
Sbjct: 264 RSY 266
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA,
nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Length = 455
Score = 27.4 bits (60), Expect = 3.3
Identities = 11/79 (13%), Positives = 22/79 (27%), Gaps = 6/79 (7%)
Query: 95 YSTVLGHLNLETSECPLFHIDYELFPAERQFYCLNNYLTTCKLLTEMG-IPSEELLKQHY 153
N ++ R + NY+ L+ +G + L+
Sbjct: 236 VHNAFVQFNEAFQSLL--NLPLTNQAITRNGTRILNYMIPTGLI--LGKMVKWGPLRPFL 291
Query: 154 SDLATKPFFPGLVKYMSSG 172
S + L K++ G
Sbjct: 292 SQETIDNWSV-LYKHVRYG 309
>2xz8_A Peptidoglycan-recognition protein LF; immune system, innate
immunity, PGRP-LF; HET: PG4; 1.94A {Drosophila
melanogaster}
Length = 150
Score = 26.4 bits (58), Expect = 4.4
Identities = 3/17 (17%), Positives = 6/17 (35%)
Query: 97 TVLGHLNLETSECPLFH 113
+++ L S H
Sbjct: 134 SLIDDLEKSGSHHHHHH 150
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 27.0 bits (60), Expect = 4.5
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 27 MIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 58
+ P+ + + I + E + + A+
Sbjct: 621 NVLPNVEGKDSLTKIARFLEGQEYYEEALNIS 652
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.436
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,735,231
Number of extensions: 150526
Number of successful extensions: 413
Number of sequences better than 10.0: 1
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 66
Length of query: 179
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 92
Effective length of database: 4,272,666
Effective search space: 393085272
Effective search space used: 393085272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.5 bits)