RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3715
(179 letters)
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 153
Score = 78.2 bits (192), Expect = 2e-19
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS--FCVSFLEK-------KS 71
ERT ++IKPD V RGL+G II RFE KG K+V MK +W+ E+ K+
Sbjct: 2 TERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKA 61
Query: 72 ACCRMVSSVPAYEISGKLLVGITYSTVLGHLNLETSECPLFHIDY 116
+ + + + G + + + D+
Sbjct: 62 LIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDF 106
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 77.3 bits (190), Expect = 4e-19
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+ IKPDGVQRGLVG IIKRFE KGF+LVAMKF+ S
Sbjct: 4 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRAS 43
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 182
Score = 77.5 bits (190), Expect = 6e-19
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 20 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
P E+T L++KPD V RGLV II RF+ G K+VA+K V S
Sbjct: 1 PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKAS 42
Score = 42.4 bits (99), Expect = 6e-06
Identities = 17/62 (27%), Positives = 24/62 (38%)
Query: 117 ELFPAERQFYCLNNYLTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVP 176
E F + + + K E+GI + + LVKYM+SGP V
Sbjct: 47 ERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVV 106
Query: 177 MV 178
MV
Sbjct: 107 MV 108
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Dictyostelium discoideum [TaxId: 44689]}
Length = 150
Score = 76.2 bits (187), Expect = 9e-19
Identities = 26/42 (61%), Positives = 31/42 (73%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSF 62
KERTFL +KPDGV RGLVG II R+E KGF LV +K + +
Sbjct: 3 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTK 44
Score = 27.3 bits (60), Expect = 0.64
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 140 EMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPM 177
+ +P+++L + HY++ +PFF GLV +++SGPVV M
Sbjct: 38 KQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAM 75
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:
3702]}
Length = 153
Score = 76.2 bits (187), Expect = 1e-18
Identities = 25/46 (54%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 17 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSF 62
M + E T++M+KPDG+QRGLVG II RFE KGFKL+ +K
Sbjct: 2 MED-VEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPK 46
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Bacillus halodenitrificans [TaxId: 1482]}
Length = 149
Score = 75.9 bits (186), Expect = 1e-18
Identities = 27/41 (65%), Positives = 32/41 (78%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
KERTFLM+KPDGVQR LVG ++KRFE KG KL K + +S
Sbjct: 1 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVIS 41
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 149
Score = 75.0 bits (184), Expect = 3e-18
Identities = 27/41 (65%), Positives = 35/41 (85%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSF 62
E++F+MIKPDGVQRGLVG IIKRFE KG+KL+A+K + +
Sbjct: 2 EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTE 42
Score = 33.1 bits (75), Expect = 0.008
Identities = 21/38 (55%), Positives = 29/38 (76%)
Query: 140 EMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPM 177
+M P+EE+LK+HY +L+ +PFF LV Y+S GPVV M
Sbjct: 36 KMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAM 73
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK
{Human(Homo sapiens), NDK3 [TaxId: 9606]}
Length = 152
Score = 75.0 bits (184), Expect = 3e-18
Identities = 29/41 (70%), Positives = 33/41 (80%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTFL +KPDGVQR LVG I++RFE KGFKLVA+K V S
Sbjct: 4 HERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQAS 44
Score = 36.9 bits (85), Expect = 3e-04
Identities = 22/36 (61%), Positives = 29/36 (80%)
Query: 144 PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179
SEELL++HY++L +PF+ LVKYM+SGPVV MV
Sbjct: 43 ASEELLREHYAELRERPFYGRLVKYMASGPVVAMVW 78
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 74.3 bits (182), Expect = 4e-18
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS--FCVSFLEKKSACCRMVSS 79
ERT ++IKPDG++R L+G II R E KG + A++ VS + S
Sbjct: 2 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 61
Query: 80 VPAYEISG 87
+ + SG
Sbjct: 62 L-EFITSG 68
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 151
Score = 74.7 bits (183), Expect = 4e-18
Identities = 26/41 (63%), Positives = 31/41 (75%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSF 62
ERTF+ IKPDGVQRGL+ II RFE KGFKLV +K + +
Sbjct: 4 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTK 44
Score = 33.8 bits (77), Expect = 0.005
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 140 EMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPM 177
++ IP+++ +QHY DL +PFF GL ++SSGPV+ M
Sbjct: 38 KVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAM 75
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK
{Myxococcus xanthus [TaxId: 34]}
Length = 143
Score = 73.5 bits (180), Expect = 9e-18
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCVSFLEKKSACCRMVSSVP 81
ERT +IKPDG+++G++G II RFE+KG K VA++ +S + + + P
Sbjct: 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLS-----QAQAEGFYAVHKARP 57
Query: 82 AYEISGKLLVGITYS--TVLGHLNLETSECPLFHIDYELFPAERQFYCL 128
++ LV S VL L E + I PA+ +
Sbjct: 58 FFK----DLVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTI 102
Score = 35.4 bits (81), Expect = 0.001
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 140 EMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+ S+ + Y+ +PFF LV++M SGPVV MV
Sbjct: 37 RLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMV 75
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK
{Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 72.7 bits (178), Expect = 1e-17
Identities = 26/40 (65%), Positives = 34/40 (85%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+MIKPDGV+RGLVG I+ RFE KGF++ A+K + +S
Sbjct: 2 ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQIS 41
Score = 34.2 bits (78), Expect = 0.003
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 140 EMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
++ S+EL ++HY++ KPFFPGLV++++SGPVV MV
Sbjct: 36 KLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMV 74
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 72.8 bits (178), Expect = 2e-17
Identities = 24/40 (60%), Positives = 32/40 (80%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+M+KPDGVQRGL+G+I+ R E KG K+V KF+ +
Sbjct: 3 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRID 42
Score = 28.1 bits (62), Expect = 0.35
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 144 PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPM 177
EEL +HY++ KPFF GLV +++SGPV M
Sbjct: 41 IDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAM 74
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 71.6 bits (175), Expect = 5e-17
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
E+TF+MIKPDGVQRGL+G +I RFE KGF L +K + V
Sbjct: 2 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVE 41
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human
(Homo sapiens), NDK4 [TaxId: 9606]}
Length = 143
Score = 70.4 bits (172), Expect = 1e-16
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSF 62
+ERT + +KPDGVQR LVG++I+RFE +GF LV MK +
Sbjct: 5 RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPE 46
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK
{Mimivirus [TaxId: 315393]}
Length = 128
Score = 67.4 bits (164), Expect = 1e-15
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 23 RTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVW 59
RT ++IKPD +R LV I+ R E K FK+V+MKF
Sbjct: 2 RTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS 38
Score = 28.5 bits (63), Expect = 0.26
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 138 LTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179
+ L++QHY + + + +F +M SGP++ +V
Sbjct: 34 MKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVY 75
>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor
eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 24.5 bits (53), Expect = 5.3
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 135 CKLLTEMGIPSEELLKQH 152
C+ L E+G+ ++ LK H
Sbjct: 107 CQFLVEIGLAKDDQLKVH 124
>d1joga_ a.24.16.2 (A:) Hypothetical protein HI0074 {Haemophilus
influenzae [TaxId: 727]}
Length = 135
Score = 24.5 bits (53), Expect = 6.3
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 15 KIMAEPKERTFLMIKPDGVQRGLVGNIIKRFE 46
+ + + +R + ++P VQ L+ I++FE
Sbjct: 14 QTVVQISDRNWFDMQPSIVQDTLIAGAIQKFE 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.142 0.436
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 682,148
Number of extensions: 30312
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 27
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.4 bits)