RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3716
(436 letters)
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix
motif, developmental protein, phosphoprotein; 1.50A
{Arabidopsis thaliana}
Length = 169
Score = 112 bits (281), Expect = 1e-29
Identities = 33/165 (20%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
Query: 196 LNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGD 255
L ++ + + + + A S++ E+LA P + L+ T ++ ++LLR F G
Sbjct: 14 LVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGT 73
Query: 256 IEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPL 315
++ + ++ K+ L ++ LA + L + + +
Sbjct: 74 WGDYKCNATRLPHLSP------DQILKLKQLTVLTLAES----NKVLPYDTLMVELDVSN 123
Query: 316 IE--VEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLA 358
+ +FLI + + G+V+G +DQ+ F V + R L QL
Sbjct: 124 VRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLG 168
Score = 60.7 bits (147), Expect = 3e-11
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 368 LSFAEISEAAQLPLIE--VEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQV 423
L + + + + +FLI + + G+V+G +DQ+ F V + R L Q+
Sbjct: 110 LPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQL 167
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 5e-09
Identities = 67/393 (17%), Positives = 121/393 (30%), Gaps = 143/393 (36%)
Query: 61 ELRDLYHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLC 120
ELRDLY + V + ++++ LS+ L+++ D K
Sbjct: 172 ELRDLYQTY---------HVLVGDLIKFSAETLSE------LIRTTLD------AEKVFT 210
Query: 121 KILQAQMIMNKDADKPGS--LDEVE---KLIDEIEL----------------LVNDIEGV 159
+ L + ++ P L + LI I+L L + ++G
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 160 TAIHSRFYLVASTL--------YRKQAKLSLYYRTALRYLGCVDLNDLTASDQVQHAF-L 210
T HS+ + A + + + ++ T L ++G + A+
Sbjct: 271 TG-HSQGLVTAVAIAETDSWESFFVSVRKAI---TVLFFIGV----------RCYEAYPN 316
Query: 211 IGL-AALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGDIEKFELMRPQWSAM 269
L ++L DS+ N E + P+L S+ + + + N+ L P
Sbjct: 317 TSLPPSILEDSLEN-NEGVPSPML-SISNLTQEQVQDYVNKTNS------HL--PA---- 362
Query: 270 NDIKANENKLSQKIAL---------------LCLMELAFKKI---PGSHQLSFAEISEAA 311
++ I+L L + L +K G Q S SE
Sbjct: 363 ------GKQVE--ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ-SRIPFSERK 413
Query: 312 QLPLIEVEFLIIKA------L--ALGLVKGHIDQVDESFNV-----------TWVQPRVL 352
FL + + L A L+ + + + SFN RVL
Sbjct: 414 --LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 353 SK-------DQLAFKKI--------PGSHQLSF 370
S D + + +H L F
Sbjct: 472 SGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Score = 56.2 bits (135), Expect = 1e-08
Identities = 76/442 (17%), Positives = 119/442 (26%), Gaps = 163/442 (36%)
Query: 69 FVI---SFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFE-------DKVKNNLEAKS 118
+ S E + V T A L + F + + E +
Sbjct: 9 LTLSHGSLEHVL-LVP--------TASFF---IASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 119 ----LCKILQAQMIMNK-DADKPGSLDEV-EKLIDEIE---LLVNDIEGVTAIHSRFYLV 169
+ K L + + + K G D+V + E E L NDI H+ L
Sbjct: 57 PAELVGKFLG--YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI------HA---LA 105
Query: 170 ASTLYRKQAKLSLYYRTALRYLGCVDLNDLTASDQVQHAFL-------IGLAAL------ 216
A L L Y+ + + A L A+
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 217 -------LADSVYNIGELLAHPILDSLQQTPNAWLVELLRA-------FNAG-DIEKFEL 261
L D +Y +L ++ +T L EL+R F G +I ++ L
Sbjct: 166 TDDYFEELRD-LYQTYHVLVGDLIKFSAET----LSELIRTTLDAEKVFTQGLNILEW-L 219
Query: 262 MRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFL 321
P P L IS PLI V L
Sbjct: 220 ENPS-----------------------------NTPDKDYLLSIPIS----CPLIGVIQL 246
Query: 322 ---IIKALALGL-----------VKGHIDQV-----------DESFN---------VTWV 347
++ A LG GH + ESF + ++
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 348 QPRVLSKDQLAF--KKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVD 405
R A+ +P S E +E P+ L I L V+ ++++ +
Sbjct: 307 GVRC----YEAYPNTSLPPSILEDSLENNEGVPSPM-----LSISNLTQEQVQDYVNKTN 357
Query: 406 ESFNVTWVQPRVLSKDQVFWSL 427
P + QV SL
Sbjct: 358 SHL------P---AGKQVEISL 370
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 4e-08
Identities = 43/283 (15%), Positives = 83/283 (29%), Gaps = 74/283 (26%)
Query: 16 EAYSKNP-----------EISAQWLNLEELYNKKLWH--QLTLAVLAFVQNPAIQKEGEL 62
E + NP + A W N + + KL + +L VL PA E
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL----EPA-----EY 371
Query: 63 RDLYHKFVISFE--TKINPVSLMEIM--EVITNHLSDQEEALVLLQSFEDKVKNNLEAKS 118
R ++ + + F I P L+ ++ +VI + D + L + K E S
Sbjct: 372 RKMFDRLSV-FPPSAHI-PTILLSLIWFDVIKS---DVMVVVNKLHKYSLVEKQPKE--S 424
Query: 119 LCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVN-DIEGVTAIHSRFY--------LV 169
I + + + +L ++D + D + + + Y L
Sbjct: 425 TISIPSIYLELKVKLENEYALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 170 ASTLYRKQAKLSLYY------RTALRYLGCV---------DLNDL-------TASDQVQH 207
+ + + +R+ L L +D
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 208 AFLIGLAALLADSVYNIGE-LLAHPILDSLQ---QTPNAWLVE 246
+ + D + I E L+ D L+ + + E
Sbjct: 543 RLV----NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 51.8 bits (123), Expect = 4e-07
Identities = 64/405 (15%), Positives = 130/405 (32%), Gaps = 114/405 (28%)
Query: 6 DPTVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEG----- 60
+Y+ + Y+ N + ++ + Y +L A+L + +G
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPY-----LKLRQALLELRPAKNVLIDGVLGSG 162
Query: 61 -------ELRDLYHKFVISFETKI---------NPVSLMEIMEVITNHL-------SDQE 97
+K + KI +P +++E+++ + + SD
Sbjct: 163 KTWVALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 98 EALVL-LQSFEDKVKNNLEAKSLCKILQAQMIMNKDADKPGSLDEV--EKLIDEIEL--- 151
+ L + S + +++ L++K L ++ L V K + L
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCL---LV----------LLNVQNAKAWNAFNLSCK 267
Query: 152 -LV--------NDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCVDLNDLTAS 202
L+ + + T H + TL + SL L+YL C DL
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-KSLL----LKYLDC-RPQDLPRE 321
Query: 203 DQVQHAFLIGL-AALLADSV--------YNIGELLAHPILDSL-QQTPNAWLVELLRAFN 252
+ + + A + D + N + L I SL P E + F
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNC-DKLTTIIESSLNVLEPA----EYRKMF- 375
Query: 253 AGDIEKFELMR-----PQ------WSAM--NDIKANENKLSQKIALLCLMELAFKK---- 295
++ + P W + +D+ NKL + L+E K+
Sbjct: 376 ----DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----SLVEKQPKESTIS 427
Query: 296 IPGSHQLSFAEISEAAQL--PLIEVEFLIIKALAL-GLVKGHIDQ 337
IP + ++ L +++ + I K L+ ++DQ
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQ 471
Score = 42.5 bits (99), Expect = 3e-04
Identities = 70/455 (15%), Positives = 123/455 (27%), Gaps = 148/455 (32%)
Query: 62 LRDLYHKFVISFETKINPVSLMEIM---EV--ITNHLSDQEEALVLLQSFEDKVKNNLEA 116
L FV +F+ K I+ E+ I L L + K + ++
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ- 80
Query: 117 KSLCKILQA--QMIMNKDADKP-GSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTL 173
K + ++L+ + +M+ + I++ + L ND + + +
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN---------V 131
Query: 174 YRKQAKLSLYYRTALRYL------------GC---VDLNDLTASDQVQHAF--------- 209
R Q L L R AL L G D+ S +VQ
Sbjct: 132 SRLQPYLKL--RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 210 ---------LIGLAALL----------ADSVYNI-----------GELLAHP-------I 232
L L LL +D NI LL +
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 233 LDSLQQTPNAWLVELLRAFNAG--------DIEKFELMRPQWSAMNDIKANENKLSQKIA 284
L N + AFN + + + + + + L+
Sbjct: 250 LL------NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 285 LLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNV 344
L K + + LP E L L + I +
Sbjct: 304 K----SL-LLK--------YLDCR-PQDLP---REVLTTNPRRLSI----IAESIRDGLA 342
Query: 345 TWVQPRVLSKDQLAFKKIPGS-HQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQ 403
TW + ++ D+L I S + L AE + F L++
Sbjct: 343 TWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKM---------F---DRLSV--------- 380
Query: 404 VDESFNV-TWVQPRVLSKDQVFWS-LEETVATEVL 436
F + +LS + W + ++ V+
Sbjct: 381 ----FPPSAHIPTILLS---LIWFDVIKSDVMVVV 408
Score = 37.5 bits (86), Expect = 0.008
Identities = 58/366 (15%), Positives = 116/366 (31%), Gaps = 103/366 (28%)
Query: 102 LLQSFEDKVKNNLEAKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTA 161
+L FED +N + K + + + ++ ++ ID I + + + G
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPK-SILSKEE-------------IDHIIMSKDAVSGT-- 64
Query: 162 IHSRFYLVASTLYRKQAKLSLYYRTALRYLGCVD------LNDLTASDQVQHAFLIGLAA 215
+ TL KQ +++ V L ++Q Q + + +
Sbjct: 65 -----LRLFWTLLSKQE------EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 216 LLADSVYNIGELLA-------HPI------LDSLQQTPN-----------AWLV-ELLRA 250
D +YN ++ A P L L+ N W+ ++ +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 251 FNAGDIEKFELMRPQ---WSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEI 307
+ K + W + + + E L LL ++ P S +
Sbjct: 174 Y------KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID------PNWTSRS--DH 219
Query: 308 SEAAQLPLIEVE-----FLIIKAL--ALGLVKGHIDQV-D----ESFNVTWVQPRVL--S 353
S +L + ++ L K L LV + V + +FN + ++L +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCL-LV---LLNVQNAKAWNAFN---LSCKILLTT 272
Query: 354 KDQLAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWV 413
+ + + + + + L EV+ L++K L D V
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-------DCRPQDLPREVLTT 325
Query: 414 QPRVLS 419
PR LS
Sbjct: 326 NPRRLS 331
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha
solenoid, regulatory PART LID, hydrolase, protein
binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Length = 394
Score = 48.7 bits (115), Expect = 2e-06
Identities = 35/262 (13%), Positives = 88/262 (33%), Gaps = 20/262 (7%)
Query: 97 EEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDI 156
EAL L ++K + L ++ + +L + + N I
Sbjct: 116 TEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL---SNLPKARAALTSARTTANAI 172
Query: 157 EGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLG--CVDLNDLTASDQVQHAFLIGLA 214
+ L + L+ + ++TA Y + + + + + L
Sbjct: 173 YCPPKVQGALDLQSGILHAADER---DFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC 229
Query: 215 ALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGDIEKFE--LMRPQWSAMND- 271
++ ++ +L++ + + + + A + + F+ L + D
Sbjct: 230 KIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDV 289
Query: 272 -IKANENKLSQKIALLCLMEL--AFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALAL 328
++A+ L + L + + ++ A ++E+ QLP+ +VE + + +
Sbjct: 290 IVQAHLGTLYDTMLEQNLCRIIEPYSRV------QVAHVAESIQLPMPQVEKKLSQMILD 343
Query: 329 GLVKGHIDQVDESFNVTWVQPR 350
G +DQ + V P
Sbjct: 344 KKFSGILDQGEGVLIVFEETPV 365
Score = 29.8 bits (66), Expect = 1.6
Identities = 13/63 (20%), Positives = 31/63 (49%)
Query: 367 QLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQVFWS 426
++ A ++E+ QLP+ +VE + + + G +DQ + V P + ++V +
Sbjct: 316 RVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLET 375
Query: 427 LEE 429
++
Sbjct: 376 IQS 378
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export,
transcription; 2.12A {Homo sapiens}
Length = 203
Score = 38.4 bits (89), Expect = 0.002
Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 18/142 (12%)
Query: 230 HPILDSLQQTPNAWLVELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLM 289
P ++ L++ E+ RA + G++ + A I+ + +K+ ++
Sbjct: 69 MPTVELLKKYHLMQFAEVTRAVSEGNLLLLHEALAKHEAF-FIRCGIFLILEKLKIITYR 127
Query: 290 ELAFK--KIPGSHQLSFAEISEAAQL------PLIEVEFLIIKALALGLVKGHIDQVDES 341
L K + +HQLS A + + EV+ ++ + +G VKG+I +
Sbjct: 128 NLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQK 187
Query: 342 FNVTWVQPRVLSKDQLAFKKIP 363
V+SK Q F +
Sbjct: 188 L--------VVSK-QNPFPPLS 200
Score = 34.1 bits (78), Expect = 0.053
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 14/70 (20%)
Query: 361 KIPGSHQLSFAEISEAAQL------PLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQ 414
+ +HQLS A + + EV+ ++ + +G VKG+I +
Sbjct: 135 LLLKTHQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKL------ 188
Query: 415 PRVLSKDQVF 424
V+SK F
Sbjct: 189 --VVSKQNPF 196
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 29.6 bits (66), Expect = 1.8
Identities = 25/180 (13%), Positives = 59/180 (32%), Gaps = 22/180 (12%)
Query: 92 HLSDQEEALVLLQS----FEDKVKNNLEAKSLCKILQAQMIMNKDADKPGSLDEVEKLID 147
+ A+ L++ F + + A ++ +++ N D ++D E +
Sbjct: 89 SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL--GEILENDLHDYAKAIDCYELAGE 146
Query: 148 EIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLS----LYYRTALRYLGCVDLNDLTASD 203
+ A+ ++ ++ + L + +Y + +G N L+
Sbjct: 147 WYA-----QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG----NRLSQWS 197
Query: 204 QVQHAFLIGLAALLADSVYNIGELL--AHPILDSLQQTPNAWLVE-LLRAFNAGDIEKFE 260
+ GL L A L + + + ++ L+ A N GD E+
Sbjct: 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Length = 84
Score = 27.5 bits (61), Expect = 2.8
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 301 QLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVD 339
++F E+ ++P + E + + + G + G IDQ+D
Sbjct: 30 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQID 68
Score = 27.5 bits (61), Expect = 2.8
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 367 QLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVD 405
++F E+ ++P + E + + + G + G IDQ+D
Sbjct: 30 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQID 68
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 28.0 bits (62), Expect = 4.6
Identities = 12/43 (27%), Positives = 15/43 (34%)
Query: 115 EAKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIE 157
+A L AQ D ++D VEKLI E
Sbjct: 118 DASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTA 160
>2inp_L Phenol hydroxylase component PHM; DIIRON, four-helix bundle,
regulatory protein, oxidoreductase; 2.30A {Pseudomonas
stutzeri} PDB: 2inn_L 1hqi_A
Length = 89
Score = 26.7 bits (59), Expect = 5.0
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 348 QPRVLSKDQLAFKKI--PGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVD 405
P + Q A +I ++ + E E LI + + G++D+ D
Sbjct: 26 NPDAEMQHQPAMIRIQAEKRLVINRETMEEKLGRDWDVQEMLI----NVISIAGNVDEDD 81
Query: 406 ESFNVTW 412
+ F + W
Sbjct: 82 DHFILEW 88
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 27.7 bits (62), Expect = 7.5
Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 15/116 (12%)
Query: 84 EIMEVITNHLSDQEEALVLLQSFEDKVKNN-----LE--AKSLCKILQAQMIMNKDADKP 136
+ + + L+ Q+E L F KN + ++++ + D
Sbjct: 319 AALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDAS 378
Query: 137 GSLDEVEKLIDEIELLVNDIEGVTAIH-SRFYLVASTLYRKQAKLSLYYRTALRYL 191
EV++++D + D + I S F V + RK A R
Sbjct: 379 AVEHEVDQVLDAV-----DFDKNGYIEYSEF--VTVAMDRKTLLSRERLERAFRMF 427
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.378
Gapped
Lambda K H
0.267 0.0473 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,593,793
Number of extensions: 404264
Number of successful extensions: 853
Number of sequences better than 10.0: 1
Number of HSP's gapped: 844
Number of HSP's successfully gapped: 42
Length of query: 436
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 340
Effective length of database: 4,021,377
Effective search space: 1367268180
Effective search space used: 1367268180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.1 bits)