RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3716
         (436 letters)



>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 84

 Score = 28.2 bits (63), Expect = 0.43
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 302 LSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVD 339
           ++F E+    ++P  + E +  + +  G + G IDQ+D
Sbjct: 31  ITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQID 68



 Score = 28.2 bits (63), Expect = 0.43
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 368 LSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVD 405
           ++F E+    ++P  + E +  + +  G + G IDQ+D
Sbjct: 31  ITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQID 68


>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii
           [TaxId: 4754]}
          Length = 295

 Score = 28.5 bits (63), Expect = 1.5
 Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 6/99 (6%)

Query: 246 ELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFA 305
            +L A+N  D+EK  L          +    N    +++           +      + A
Sbjct: 153 LILSAWNPADLEKMALPPCHMFCQFYVHIPSNNHRPELSCQLYQRSC--DMGLGVPFNIA 210

Query: 306 EIS----EAAQLPLIEVEFLIIKALALGLVKGHIDQVDE 340
             +      A +  ++    I       + K HI+ + +
Sbjct: 211 SYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDHIEALQQ 249


>d1niga_ a.25.2.1 (A:) Hypothetical protein Ta1238 {Archaeon
           Thermoplasma acidophilum [TaxId: 2303]}
          Length = 148

 Score = 26.5 bits (58), Expect = 4.0
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 55  AIQKEGELRDLYHKFVISFETKINPV-SLMEIMEVITNHLSDQEEALVLLQSFEDKVKNN 113
             + E E  + Y    IS   K+     +++I++ + N LSD E     L  F++K  N 
Sbjct: 22  KFRSEIEAAEAYLGLAISEGIKVRETREILDIIDTVYNSLSDPE---SKLNDFQEKRLNF 78

Query: 114 LE 115
            E
Sbjct: 79  TE 80


>d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 89

 Score = 25.4 bits (56), Expect = 4.8
 Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 121 KILQAQMIMNKDADKPGSLDEVEKLIDEIELLVN-DIEGVTAI 162
             L   +++    D  G  +  E+ +  IE + N ++  V  +
Sbjct: 49  VALNVMVVVG---DAEGGTEAAEESLSGIEGVSNIEVTDVRRL 88


>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 156

 Score = 26.1 bits (57), Expect = 5.9
 Identities = 5/22 (22%), Positives = 12/22 (54%)

Query: 187 ALRYLGCVDLNDLTASDQVQHA 208
            ++YLG V++++       + A
Sbjct: 29  PVKYLGHVEVDESRGMHICEDA 50


>d1boba_ d.108.1.1 (A:) Histone acetyltransferase HAT1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 315

 Score = 26.0 bits (57), Expect = 9.5
 Identities = 4/50 (8%), Positives = 20/50 (40%)

Query: 71  ISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLC 120
           + +  K+   +++++ + + + L   +  +     + D      +  +L 
Sbjct: 64  VKYSAKLGDDNIVDVEKKLLSFLPKDDVIVRDEAKWVDCFAEERKTHNLS 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0628    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,562,530
Number of extensions: 72132
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 17
Length of query: 436
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 348
Effective length of database: 1,199,356
Effective search space: 417375888
Effective search space used: 417375888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)