BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3718
(543 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VA9|A Chain A, Solution Structure Of The Second Fniii Domain Of Dscaml1
Protein
Length = 122
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
T E AP GPP + ++ +++V+W P+++ NGVI+GY +GY+E S + V
Sbjct: 10 TEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIV 69
Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
+ K G TL +LK + QY VVVQA N+ G GP S E+ T E P
Sbjct: 70 EM-KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGP 119
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
T E P+ PP D T +TSQ+I+V+W +P NGVI+GY++ Y
Sbjct: 10 TEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGY 55
>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 134
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S T+ TA+ PS PP + + T++VSW PP D NGVI Y V Y+
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
+ S+E L L+ +T+Y V V+A +GPGP S V T E
Sbjct: 61 VDGEDRGRHVVDGISREHSS---WDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDE 117
Query: 351 GTPEQPPQ 358
P PP+
Sbjct: 118 DVPSGPPR 125
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 341 SEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
S ++ TA+ TP PPQ C ++ S T+RVSWV PP + NGVI Y V Y
Sbjct: 6 SGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAY 58
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIK 256
W Y + + A ++G S V + T E+ PSGPP ++
Sbjct: 89 WTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVE 128
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 21/126 (16%)
Query: 61 QTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSI--K 118
Q++ P + C + G + + W + P +D+R NGV++ S+ +
Sbjct: 15 QSTPSAPPQKVMCVSMGSTTVRVSW------VPPPADSR---------NGVITQYSVAYE 59
Query: 119 RTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSP 178
+ D + IS + +++ GL+K Y +V A T++G G S V +
Sbjct: 60 AVDGEDRGRHVVD----GISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRT 115
Query: 179 SNRVPA 184
VP+
Sbjct: 116 DEDVPS 121
>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 124
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Query: 228 NEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVG 287
N G +D +T++T + PS PP ++ +E + ++KVSW PP NG I GY +
Sbjct: 8 NRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIR 67
Query: 288 YKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQY 347
+++T+ + ET+ E + L+ +QYS V A+ G GP S Y
Sbjct: 68 HRKTT--RRGEMETL-----EPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPS---NWY 117
Query: 348 TAEGTPEQ 355
TAE TPE
Sbjct: 118 TAE-TPEN 124
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 333 NKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKV 391
N+ GPG ++++ T P PPQ+ + + S++I+VSW+ PP T NG I GYK+
Sbjct: 8 NRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKI 66
>pdb|1CFB|A Chain A, Crystal Structure Of Tandem Type Iii Fibronectin Domains
From Drosophila Neuroglian At 2.0 Angstroms
Length = 205
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 217 WKTYHIRIVAENEIGSSEPS-DTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSP-PER 274
W Y R++A N+IG+S PS + + T + P P ++ + T+ N L +SW+P PE
Sbjct: 72 WANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEI 131
Query: 275 DHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNK 334
+H N YYV +K + + + +++++ ++ T+ +Y + V A+N
Sbjct: 132 EH-NAPNFHYYVSWKRDIPAAAWENNNI----FDWRQNNIVIADQPTFVKYLIKVVAIND 186
Query: 335 LGPGPM-SEEVKQYTAE 350
G + +EEV Y+ E
Sbjct: 187 RGESNVAAEEVVGYSGE 203
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
+Y+ R++AENE G P++T + A E P PP I + +N++ +SW PE D +
Sbjct: 74 SYYFRVLAENEYGIGLPAETAESVKASERPL-PPGKITLMDVTRNSVSLSWEKPEHDGGS 132
Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
++ GY V + +DK TV + T++ L +YS V A N+ G
Sbjct: 133 RIL-GYIVEMQTKGSDKWATCATVKVT-------EATITGLIQGEEYSFRVSAQNEKG 182
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
GPP +KV+ + ++ ++W PP D I+ Y V +E ST K + + K
Sbjct: 7 GPPQDLKVKEVTKTSVTLTWDPPLLDG-GSKIKNYIVEKRE-STRKAYSTVATNCHKTSW 64
Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQT 369
K + L+ Y V A N+ G G +E + A P PP T +T +
Sbjct: 65 K-----VDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERP-LPPGKITLMDVTRNS 118
Query: 370 IRVSWVSP 377
+ +SW P
Sbjct: 119 VSLSWEKP 126
>pdb|2DLH|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
Receptor-Type Tyrosine-Protein Phosphatase Delta
Length = 121
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S V T+E+APS P ++ T+ V W PE NG IQGY V Y
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEP--NGQIQGYRVYYTM 58
Query: 291 TSTDKPFLFETVDFSKEEGKEHHL-TLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA 349
T ++ K + + T+ +L YSV V A +G GP+S +++ T
Sbjct: 59 DPTQ-----HVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQ 113
Query: 350 EGT 352
G+
Sbjct: 114 TGS 116
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
T+E P P+D L+S TI V W P NG I+GY+V Y
Sbjct: 13 TSEQAPSSAPRDVQARMLSSTTILVQWKEPE--EPNGQIQGYRVYY 56
>pdb|1X5G|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Neogenin
Length = 116
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
GP +++ A ++ V+W P NG IQ Y + Y E TDK + VD S
Sbjct: 19 GPAPNLRAYAASPTSITVTWETPVSG--NGEIQNYKLYYMEKGTDKE---QDVDVSS--- 70
Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV 344
H T++ LK YT+YS V A NK GPG + +V
Sbjct: 71 --HSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDV 103
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S V + T + PS P ++ +E + ++ + W PP NG I GY + Y++
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
S K + ET+ G + + L T+Y+ V AL G GP ++ + T E
Sbjct: 61 ASR-KSDVTETL----VSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFE 115
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
G S +V T P PQ+ + S++I + W P T NG I GYK+ Y
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRY 58
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 116/301 (38%), Gaps = 37/301 (12%)
Query: 56 IKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLD----PKSDNRYTIREEILPNGV 111
I+L+N+T+ L C+A+GE I W + +D + D R E+
Sbjct: 5 IQLKNETTYENGQVTLVCDAEGEPIPEITW---KRAVDGFTFTEGDKSLDGRIEVKGQHG 61
Query: 112 LSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKK--QNYIFYVTASTNIGEGQ 169
S L IK + DS + CE S+ Q+ Y K N Y + EG
Sbjct: 62 SSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSW-----EGN 116
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVG-------VPAPEIIWKTYHI 222
P N++ + PA I D L + G P + + Y+
Sbjct: 117 PI-NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYN- 174
Query: 223 RIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGV-I 281
A N IG+ IL + PS P +K+ Q T KVS++ P D GV I
Sbjct: 175 -CTATNHIGTRFQE---YILALADVPSS-PYGVKIIELSQTTAKVSFNKP--DSHGGVPI 227
Query: 282 QGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMS 341
Y V KE ++ E + G + + L++L+ T Y + V A+N G G S
Sbjct: 228 HHYQVDVKEVAS------EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281
Query: 342 E 342
+
Sbjct: 282 K 282
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
TY IR+ A N G + S T PP+ I + + + K+S + ++D
Sbjct: 264 TYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS-IHGQPSSGKSFKLSIT--KQDDGG 320
Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
I Y V Y+ + +L + V +G + H+ L L+ Y V + A N+LG
Sbjct: 321 APILEYIVKYRSKDKEDQWLEKKV-----QGNKDHIILEHLQWTMGYEVQITAANRLG 373
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 116/301 (38%), Gaps = 37/301 (12%)
Query: 56 IKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLD----PKSDNRYTIREEILPNGV 111
I+L+N+T+ L C+A+GE I W + +D + D R E+
Sbjct: 5 IQLKNETTYENGQVTLVCDAEGEPIPEITW---KRAVDGFTFTEGDKSLDGRIEVKGQHG 61
Query: 112 LSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKK--QNYIFYVTASTNIGEGQ 169
S L IK + DS + CE S+ Q+ Y K N Y + EG
Sbjct: 62 SSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSW-----EGN 116
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVG-------VPAPEIIWKTYHI 222
P N++ + PA I D L + G P + + Y+
Sbjct: 117 PI-NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYN- 174
Query: 223 RIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGV-I 281
A N IG+ IL + PS P +K+ Q T KVS++ P D GV I
Sbjct: 175 -CTATNHIGTRFQE---YILALADVPSS-PYGVKIIELSQTTAKVSFNKP--DSHGGVPI 227
Query: 282 QGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMS 341
Y V KE ++ E + G + + L++L+ T Y + V A+N G G S
Sbjct: 228 HHYQVDVKEVAS------EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281
Query: 342 E 342
+
Sbjct: 282 K 282
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
S APP F++ L +Q+ R G+ ++ +GE + W N + + P D R E
Sbjct: 2 SKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRP--DQRRFAEE--- 56
Query: 108 PNGVLSDLSIKRTERGDSALFTCE 131
G L L I ERGD+ +TC+
Sbjct: 57 AEGGLCRLRILAAERGDAGFYTCK 80
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
APP F++K + GE +C G PI I W +N+ + P + + T+ E
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT--- 60
Query: 110 GVLSDLSIKRTERGDSALFTC 130
+ L++ + +GD+ +TC
Sbjct: 61 ---ATLTVLKVTKGDAGQYTC 78
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
PP F K + +G L+CE +G P + W+ + + L +S +Y I E
Sbjct: 192 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL--RSGKKYKIMSE----N 245
Query: 111 VLSDLSIKRTERGDSALFTCE 131
L+ + I + D + C+
Sbjct: 246 FLTSIHILNVDSADIGEYQCK 266
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 50 APPEFEIKLR-NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
APP F KL ++ ++ E + +C+ G I +LW + + S R + E +
Sbjct: 97 APPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV-- 154
Query: 109 NGVLSDLSIKRTERGDSALFTCE 131
VL ++ + GD +TCE
Sbjct: 155 -AVLEMYNLSVEDSGD---YTCE 173
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of
Human Obscurin
Length = 107
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
SS P F ++NQ +R G +VLQCE P+ W ++ L + +RY++R++
Sbjct: 5 SSGPARFIEDVKNQEAREGATAVLQCELNSAAPVE--WRKGSETL--RDGDRYSLRQD-- 58
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLK 150
G +L I+ D+ ++C + Q+ +S +T A +K
Sbjct: 59 --GTKCELQIRGLAMADTGEYSC-VCGQERTSAMLTVRALPIK 98
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
APP F++K + GE +C G PI I W +N+ + P + + T+ E
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT--- 60
Query: 110 GVLSDLSIKRTERGDSALFTC 130
+ L++ + +GD+ +TC
Sbjct: 61 ---ATLTVLKVTKGDAGQYTC 78
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
PP F K + +G L+CE +G P + W+ + + L +S +Y I E
Sbjct: 192 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL--RSGKKYKIMSE----N 245
Query: 111 VLSDLSIKRTERGDSALFTCE 131
L+ + I + D + C+
Sbjct: 246 FLTSIHILNVDSADIGEYQCK 266
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 51 PPEFEIKLR-NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
PP F KL ++ ++ E + +C+ G I +LW + + S R + E +
Sbjct: 98 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV--- 154
Query: 110 GVLSDLSIKRTERGDSALFTCE 131
VL ++ + GD +TCE
Sbjct: 155 AVLEMYNLSVEDSGD---YTCE 173
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN--TLKVSWSPPERDHWNGVIQGYYVGY 288
GSS S T T E P+ PP + V + + T+ V+W PP NG I GY + Y
Sbjct: 1 GSSGSSGTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEA--NGKITGYIIYY 58
Query: 289 KETSTDKPFLFETVDFSKEEGKEHHLT--LSSLKTYTQYSVVVQALNKLGPGPMSEEVK 345
STD E D+ E + LT + L T Y +QA N G GPMSE V+
Sbjct: 59 ---STD--VNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQ 112
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
++ PPE K +NQ R G + C A+G+ P I+W N K++ + +RYT+ E+
Sbjct: 5 AAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVS-GTQSRYTVLEQ-- 61
Query: 108 PNGVLSDLSIKRTERG-DSALFTC 130
P G+ S L I+ G D A + C
Sbjct: 62 PGGI-SILRIEPVRAGRDDAPYEC 84
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
PP F++K + GE +C G PI I W +N+ + P + + T+ E
Sbjct: 197 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT---- 252
Query: 111 VLSDLSIKRTERGDSALFTC 130
+ L++ + +GD+ +TC
Sbjct: 253 --ATLTVLKVTKGDAGQYTC 270
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
APP F KL + ++ GE LQ +G +PI + W + + +SDN + E
Sbjct: 476 APPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSE---- 531
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQ 135
++ L R E ++ +TC+IK++
Sbjct: 532 -NIATLQFSRAEPANAGKYTCQIKNE 556
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 78/219 (35%), Gaps = 43/219 (19%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
PP F K + +G L+CE +G P + W+ + + L +S +Y I E
Sbjct: 384 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL--RSGKKYKIMSE----N 437
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
L+ + I + D + C+ AS ++G
Sbjct: 438 FLTSIHILNVDSADIGEYQCK-----------------------------ASNDVGSDTC 468
Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENE- 229
++TL + P R + + E+++L G + W IV E++
Sbjct: 469 VGSITL----KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDN 524
Query: 230 --IGSSEPSDTVTILTAEEAPSGPPT-HIKVEATDQNTL 265
I SE T+ AE A +G T IK EA Q
Sbjct: 525 IWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECF 563
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
PP F L + + GEP LQC+ G I I W + +L +S Y ++ N
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKL--RSAPAYKMQ---FKNN 59
Query: 111 VLSDLSIKRTERGDSALFTCE 131
V S L I + + D +TC+
Sbjct: 60 VAS-LVINKVDHSDVGEYTCK 79
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
PP F KL++ G P +C G +P+ + W + + L ++ ++ + N
Sbjct: 101 PPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDAN----LQTSFIHN- 155
Query: 111 VLSDLSIKRTERGDSALFTC 130
++ L I +T++ + C
Sbjct: 156 -VATLQILQTDQSHVGQYNC 174
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 51 PPEFEIKLR-NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
PP F KL ++ ++ E + +C+ G I +LW + + S R + E +
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV--- 346
Query: 110 GVLSDLSIKRTERGDSALFTCE 131
VL ++ + GD +TCE
Sbjct: 347 AVLEMYNLSVEDSGD---YTCE 365
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
PPE K +NQ R G + C A+G+ P I+W N K++ + +RYT+ E+ P G
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVS-GTQSRYTVLEQ--PGG 62
Query: 111 VLSDLSIKRTERG-DSALFTC 130
+ S L I+ G D A + C
Sbjct: 63 I-SILRIEPVRAGRDDAPYEC 82
>pdb|2EDL|A Chain A, Solution Structure Of The Ig-Like Domain (3801-3897) Of
Human Obscurin
Length = 110
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
SS P F ++NQ +R G +VLQCE P+ W ++ L + +RY++R++
Sbjct: 5 SSGPARFIEDVKNQEAREGATAVLQCELSKAAPVE--WRKGSETL--RGGDRYSLRQD-- 58
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEA 146
G +L I D+ ++C + Q+ +S +T A
Sbjct: 59 --GTRCELQIHGLSVADTGEYSC-VCGQERTSATLTVRA 94
>pdb|2EE2|A Chain A, Solution Structures Of The Fn3 Domain Of Human Contactin 1
Length = 119
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH-WNGVIQGYYVGYK 289
GSS S I +A++APS PT + V+ + + V W +H +++ Y + Y
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHW-----EHVLEKIVESYQIRYW 55
Query: 290 ETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA 349
+ DK E + + +E+ L +L TQY + V A N G GP S+ ++ +T
Sbjct: 56 -AAHDKE---EAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTK 111
Query: 350 EGT 352
+ +
Sbjct: 112 KAS 114
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 58/133 (43%), Gaps = 17/133 (12%)
Query: 220 YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN--TLKVSWSPPERDHW 277
Y ++ SS S T T E P+ PP + V + + T+ V+W PP
Sbjct: 77 YEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEA-- 134
Query: 278 NGVIQGYYVGYKETSTD-----KPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQAL 332
NG I GY + Y STD ++ E V ++ + LTL T Y +QA
Sbjct: 135 NGKITGYIIYY---STDVNAEIHDWVIEPVVGNRLTHQIQELTLD-----TPYYFKIQAR 186
Query: 333 NKLGPGPMSEEVK 345
N G GPMSE V+
Sbjct: 187 NSKGMGPMSEAVQ 199
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 62/178 (34%), Gaps = 19/178 (10%)
Query: 246 EAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFS 305
+ P PP ++ +T++++W+ + Y + K + +
Sbjct: 2 DLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRW----KTNIPANTKYK 57
Query: 306 KEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTL 365
++ LK T Y V S T E P PP+D T +
Sbjct: 58 NANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSK 117
Query: 366 TS--QTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLI 421
+TI V+W P ANG I GY + Y TD+ +I WV P++
Sbjct: 118 EGKPKTIIVNWQPPS--EANGKITGYIIYYS----------TDVNAEIH-DWVIEPVV 162
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
SS P FE+KL++ G P C G I W + K++ PKSD+ YTI+ ++
Sbjct: 5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDH-YTIQRDL 62
>pdb|2ED8|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 106
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 254 HIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHH 313
+++ +T ++ ++W PP + NG +QGY + E ST K E S +
Sbjct: 13 NLQAVSTSPTSILITWEPPA--YANGPVQGYRLFCTEVSTGKEQNIEVDGLSYK------ 64
Query: 314 LTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
L LK +T+YS+ A N+ GPG ++++ T
Sbjct: 65 --LEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVT 97
>pdb|2EDY|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 103
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 252 PTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKE 311
P ++ V +T +++W PP NG I Y V +++ ++ + T D
Sbjct: 12 PQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITTD-------- 63
Query: 312 HHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
TL+ LK T Y + V+A G GP+S ++ T
Sbjct: 64 TRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 357 PQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
PQ+ T LT+ T ++W P L NG I Y VV+
Sbjct: 12 PQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVF 48
>pdb|1UEN|A Chain A, Solution Structure Of The Third Fibronectin Iii Domain Of
Human Kiaa0343 Protein
Length = 125
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 245 EEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVD- 303
E+ P P +++V + +V W P G +QGY + Y +T + ++
Sbjct: 11 EDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEK 70
Query: 304 -FSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGT 352
+G + H L L+ ++ Y++ V+ +N G GP S + T EG+
Sbjct: 71 KILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGS 120
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 46 LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
+L P L NQT+ GE + C A G P I+W +N+ L S
Sbjct: 661 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI------- 713
Query: 106 ILPNGVLSDLSIKRTERGDSALFTCE 131
+L +G +L+I+R + D L+TC+
Sbjct: 714 VLKDGN-RNLTIRRVRKEDEGLYTCQ 738
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 74/194 (38%), Gaps = 37/194 (19%)
Query: 66 GEPSVLQCEAKGEKPIGILWNM---NNKRLDPKSDNR-YTIREEILPNGVLSDLSIKRTE 121
GE VL C A+ E +GI +N ++K K NR + LS L+I
Sbjct: 239 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 298
Query: 122 RGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNR 181
R D L+TC +SGL K+N F V P
Sbjct: 299 RSDQGLYTCA-------------ASSGLMTKKNSTFV--------------RVHEKPFVA 331
Query: 182 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTI 241
+ + S + AT E +++P +G P PEI W I + + + I + +TI
Sbjct: 332 FGSGMESLVE---ATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGH---VLTI 385
Query: 242 LTAEEAPSGPPTHI 255
+ E +G T I
Sbjct: 386 MEVSERDTGNYTVI 399
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 25/63 (39%)
Query: 477 GPPPCPGSDETLYSRHRGESDKCKNDRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPE 536
G C D RH +RV I +N T + E I++ C G P P+
Sbjct: 638 GDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQ 697
Query: 537 IIW 539
I+W
Sbjct: 698 IMW 700
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 13/175 (7%)
Query: 220 YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG 279
Y + N +G S+ + +TI + + P +K D N L V W+ P
Sbjct: 373 YLATLTVRNLVGKSDAA-VLTIPACDFQATHPVMDLKAFPKD-NMLWVEWTTPRES---- 426
Query: 280 VIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTL-SSLKTYTQYSVVVQALNKLGPG 338
++ Y + + S P + D+ +E+G H L +L Y + V + GPG
Sbjct: 427 -VKKYILEWCVLSDKAPCI---TDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPG 482
Query: 339 PMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
E +K Y + P + P T ++ + + W P+ NG I+ Y + Y
Sbjct: 483 S-PESIKAYLKQAPPSKGPTVRTKKVGKNEAV-LEWDQLPVDVQNGFIRNYTIFY 535
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 15/179 (8%)
Query: 222 IRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQ--NTLKVSWSPPERDHWNG 279
+ + AEN +G SD + + PP ++ V +++ + LK++W+ P +
Sbjct: 173 VWVEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIK--SV 229
Query: 280 VIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG- 338
+I Y + Y+ T + + T+ LK +T+Y ++ + + G G
Sbjct: 230 IILKYNIQYR---TKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGY 286
Query: 339 --PMSEEVKQYTAEGTPEQPP----QDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKV 391
SEE T E P + P + + T +T+++ W + P ANG I Y+V
Sbjct: 287 WSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEV 345
>pdb|3L5J|A Chain A, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4
pdb|3L5J|B Chain B, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4
Length = 288
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 13/175 (7%)
Query: 220 YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG 279
Y + N +G S+ + +TI + + P +K D N L V W+ P
Sbjct: 74 YLATLTVRNLVGKSDAA-VLTIPACDFQATHPVMDLKAFPKD-NMLWVEWTTPRES---- 127
Query: 280 VIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTL-SSLKTYTQYSVVVQALNKLGPG 338
++ Y + + S P + D+ +E+G H L +L Y + V + GPG
Sbjct: 128 -VKKYILEWCVLSDKAPCI---TDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPG 183
Query: 339 PMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
E +K Y + P + P T ++ + + W P+ NG I+ Y + Y
Sbjct: 184 S-PESIKAYLKQAPPSKGPTVRTKKVGKNEAV-LEWDQLPVDVQNGFIRNYTIFY 236
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 46 LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDP-KSDNRYTIRE 104
++ + P F + + T+ G+ +L+CE G+ I W N + L+P D+R
Sbjct: 116 VMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVV--- 172
Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKS 134
+LP+G L I R + GDS ++ C ++
Sbjct: 173 -VLPSGA---LQISRLQPGDSGVYRCSARN 198
>pdb|3L5I|A Chain A, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4-6)
Length = 290
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 13/175 (7%)
Query: 220 YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG 279
Y + N +G S+ + +TI + + P +K D N L V W+ P
Sbjct: 74 YLATLTVRNLVGKSDAA-VLTIPACDFQATHPVXDLKAFPKD-NXLWVEWTTPRES---- 127
Query: 280 VIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTL-SSLKTYTQYSVVVQALNKLGPG 338
++ Y + + S P + D+ +E+G H L +L Y + V + GPG
Sbjct: 128 -VKKYILEWCVLSDKAPCI---TDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPG 183
Query: 339 PMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
E +K Y + P + P T ++ + + W P+ NG I+ Y + Y
Sbjct: 184 S-PESIKAYLKQAPPSKGPTVRTKKVGKNEAV-LEWDQLPVDVQNGFIRNYTIFY 236
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 222 IRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVI 281
++++ N G E S + + T E+ P PT +T + + + W P + + GVI
Sbjct: 437 VKLILMNPEGRKE-SQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTY--GVI 493
Query: 282 QGYYVGYKETSTDKPFLFETVDFSKEEGK------EHHLTLSSLKTYTQYSVVVQALNKL 335
Y + YK S+ P +D S + G+ E H L T YS ++A
Sbjct: 494 TLYEITYKAVSSFDP----EIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAK 549
Query: 336 GPGP 339
G GP
Sbjct: 550 GFGP 553
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
PP + +T G L+C A G I W ++ K++ +++RY + + + NG
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKI--ANNDRYQVGQYVTVNG 486
Query: 111 -VLSDLSIKRTERGDSALFTCEIKSQ 135
V+S L+I D L+ C KS+
Sbjct: 487 DVVSYLNITSVHANDGGLYKCIAKSK 512
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 88/239 (36%), Gaps = 50/239 (20%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
PP F +QT G + C+A G+ I+WN K++ S+ R+ + E +G
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKV---SNQRFEVIE--FDDG 60
Query: 111 VLSDLSIK--RTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
S L I+ RT R D A++ C AS N+GE
Sbjct: 61 SGSVLRIQPLRTPR-DEAIYEC-----------------------------VASNNVGEI 90
Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIK---LPCLTVGVPAPEIIWKTYHIRIV 225
S +T+ +++P + + E + + C G P PEI W + +
Sbjct: 91 SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVD 150
Query: 226 AENEIG-----SSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG 279
N G SE + I +EE+ G K E N+ +S P + G
Sbjct: 151 TSNNNGRIKQLRSESIGALQIEQSEESDQG-----KYECVATNSAGTRYSAPANLYVRG 204
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 46 LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
+L P L NQT+ GE + C A G P I+W +N+ L S
Sbjct: 5 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI------- 57
Query: 106 ILPNGVLSDLSIKRTERGDSALFTCEIKS 134
+L +G +L+I+R + D L+TC+ S
Sbjct: 58 VLKDGN-RNLTIRRVRKEDEGLYTCQACS 85
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
++ P FE+KL++ G P C G I W + K++ PKSD+ YTI+ ++
Sbjct: 4 NATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDH-YTIQRDL 61
>pdb|1MI5|E Chain E, The Crystal Structure Of Lc13 Tcr In Complex With
Hlab8-Ebv Peptide Complex
pdb|3KPR|E Chain E, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylkawtf A Mimotope
pdb|3KPR|J Chain J, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylkawtf A Mimotope
pdb|3KPS|E Chain E, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylqafty A Self Peptide From The Abcd3
Protein
Length = 241
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 45/168 (26%)
Query: 59 RNQTSRRGEPSVLQC-------------EAKGEKPIGILWNMNNKRLDPK---SDNRYTI 102
R + ++RG+ L+C +A G+ P + + N +LD SD +
Sbjct: 7 RYKVAKRGQDVALRCDPISGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAE 66
Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
R P G +S L I+RT++ DSA++ C AS L Q Y Y
Sbjct: 67 R----PEGSVSTLKIQRTQQEDSAVYLC---------------ASSL--GQAYEQYFGPG 105
Query: 163 TNIGEGQPSKNVTLSPSNRVPARIASFN-DNFTATYTEDIKLPCLTVG 209
T + + KNV P +A F ++T+ L CL G
Sbjct: 106 TRLTVTEDLKNV-------FPPEVAVFEPSEAEISHTQKATLVCLATG 146
>pdb|1KGC|E Chain E, Immune Receptor
Length = 242
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 45/168 (26%)
Query: 59 RNQTSRRGEPSVLQC-------------EAKGEKPIGILWNMNNKRLDPK---SDNRYTI 102
R + ++RG+ L+C +A G+ P + + N +LD SD +
Sbjct: 8 RYKVAKRGQDVALRCDPISGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAE 67
Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
R P G +S L I+RT++ DSA++ C AS L Q Y Y
Sbjct: 68 R----PEGSVSTLKIQRTQQEDSAVYLC---------------ASSL--GQAYEQYFGPG 106
Query: 163 TNIGEGQPSKNVTLSPSNRVPARIASFN-DNFTATYTEDIKLPCLTVG 209
T + + KNV P +A F ++T+ L CL G
Sbjct: 107 TRLTVTEDLKNV-------FPPEVAVFEPSEAEISHTQKATLVCLATG 147
>pdb|3OF6|A Chain A, Human Pre-T Cell Receptor Crystal Structure
pdb|3OF6|B Chain B, Human Pre-T Cell Receptor Crystal Structure
pdb|3OF6|C Chain C, Human Pre-T Cell Receptor Crystal Structure
Length = 255
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 45/168 (26%)
Query: 59 RNQTSRRGEPSVLQC-------------EAKGEKPIGILWNMNNKRLDPK---SDNRYTI 102
R + ++RG+ L+C +A G+ P + + N +LD SD +
Sbjct: 12 RYKVAKRGQDVALRCDPISGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAE 71
Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
R P G +S L I+RT++ DSA++ C AS L Q Y Y
Sbjct: 72 R----PEGSVSTLKIQRTQQEDSAVYLC---------------ASSL--GQAYEQYFGPG 110
Query: 163 TNIGEGQPSKNVTLSPSNRVPARIASFN-DNFTATYTEDIKLPCLTVG 209
T + + KNV P +A F ++T+ L CL G
Sbjct: 111 TRLTVTEDLKNV-------FPPEVAVFEPSEAEISHTQKATLVCLATG 151
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYY-VGYKETSTDKPFLFETVDFSKEEG 309
PP + V T ++ ++W D N YY + Y+ T+ PF + VD
Sbjct: 10 PPIDLVVTETTATSVTLTW-----DSGNSEPVTYYGIQYRAAGTEGPF--QEVDGVAT-- 60
Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
++ L +++Y+ V A+N +G GP SE V+ T E
Sbjct: 61 --TRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGE 99
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 74/194 (38%), Gaps = 37/194 (19%)
Query: 66 GEPSVLQCEAKGEKPIGILWNM---NNKRLDPKSDNR-YTIREEILPNGVLSDLSIKRTE 121
GE VL C A+ E +GI +N ++K K NR + LS L+I
Sbjct: 109 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 168
Query: 122 RGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNR 181
R D L+TC +SGL K+N F V P
Sbjct: 169 RSDQGLYTCA-------------ASSGLMTKKNSTFV--------------RVHEKPFVA 201
Query: 182 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTI 241
+ + S + AT E +++P +G P PEI W I + + + I + +TI
Sbjct: 202 FGSGMESLVE---ATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI---KAGHVLTI 255
Query: 242 LTAEEAPSGPPTHI 255
+ E +G T I
Sbjct: 256 MEVSERDTGNYTVI 269
>pdb|1WFN|A Chain A, The Fourth Fn3 Domain Of Human Sidekick-2
Length = 119
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S + T E+ P GP H+ +LKVSW P NG++ GY + ++E
Sbjct: 1 GSSGSSGPQLVRTHEDVP-GPVGHLSFSEILDTSLKVSWQEPGEK--NGILTGYRISWEE 57
Query: 291 ---TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMS 341
T+T V E+ +T L T Y++ V A+ G G +S
Sbjct: 58 YNRTNTRVTHYLPNVTL------EYRVT--GLTALTTYTIEVAAMTSKGQGQVS 103
>pdb|3S58|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S58|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
Length = 223
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 56 IKLRNQTSRRGEPSVLQCEAKGEKPIGIL-WNMNNKR------LDPKSDNRYTIREEILP 108
+ +N T+R GEP VL+C+ +KP L W +N R L P+ + +LP
Sbjct: 3 VDAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLP 62
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTY 144
NG L + D +F C+ ++ + Y
Sbjct: 63 NG---SLFLPAVGIQDEGIFRCQAMNRNGKETKSNY 95
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGV-IQGYYVGYK 289
GSS S IL + PS P +K+ Q T KVS++ P D GV I Y V K
Sbjct: 1 GSSGSSGQEYILALADVPS-SPYGVKIIELSQTTAKVSFNKP--DSHGGVPIHHYQVDVK 57
Query: 290 ETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE 342
E ++ E + G + + L++L+ T Y + V A+N G G S+
Sbjct: 58 EVAS------EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSK 104
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 59 RNQTSRRGEPSVLQCEAKGEKPIGIL-WNMNNKR------LDPKSDNRYTIREEILPNGV 111
+N T+R GEP VL+C+ +KP L W +N R L P+ + +LPNG
Sbjct: 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGS 433
Query: 112 LSDLSIKRTERGDSALFTCEIKSQKISSQQMTY 144
L ++ + G +F C+ ++ + Y
Sbjct: 434 LFLPAVGIQDEG---IFRCQAMNRNGKETKSNY 463
>pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human
Fibronectin Type Iii Domain Containing Protein 3a
Length = 110
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 265 LKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQ 324
+++ W PP D + I Y V D+P +G E T+SSL
Sbjct: 26 IQLRWGPPLVDGGS-PISCYSVEMSPIEKDEPREVY-------QGSEVECTVSSLLPGKT 77
Query: 325 YSVVVQALNKLGPGPMSEEVKQYTAEGT 352
YS ++A NK+G GP SE+ TA G+
Sbjct: 78 YSFRLRAANKMGFGPFSEKCDITTAPGS 105
>pdb|3CJJ|A Chain A, Crystal Structure Of Human Rage Ligand-Binding Domain
Length = 219
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 59 RNQTSRRGEPSVLQCEAKGEKPIGIL-WNMNNKR------LDPKSDNRYTIREEILPNGV 111
+N T+R GEP VL+C+ +KP L W +N R L P+ + +LPNG
Sbjct: 3 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNG- 61
Query: 112 LSDLSIKRTERGDSALFTCEIKSQKISSQQMTY 144
L + D +F C+ ++ + Y
Sbjct: 62 --SLFLPAVGIQDEGIFRCQAMNRNGKETKSNY 92
>pdb|3N1G|C Chain C, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1G|D Chain D, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1M|C Chain C, Crystal Structure Of Ihhn Bound To Bocfn3
pdb|3N1P|C Chain C, Crystal Structure Of Ihhn Bound To Bocfn3
Length = 111
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 246 EAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFS 305
E P P +A ++ T+ + W + N I G+Y+ Y+ T +D D+
Sbjct: 4 ERPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDND-----SDYK 58
Query: 306 KE--EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMS 341
K+ EG ++ ++S L+ T Y + +Q N+ G S
Sbjct: 59 KDMVEGDKYWHSISHLQPETSYDIKMQCFNEGGESEFS 96
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 65 RGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSI--KRTER 122
+GEP+ L C+A+G I W +R++ D+ + R +LP+G L L I R R
Sbjct: 23 KGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR-MLLPSGSLFFLRIVHGRKSR 81
Query: 123 GDSALFTC 130
D ++ C
Sbjct: 82 PDEGVYVC 89
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 65 RGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSI--KRTER 122
+GEP+ L C+A+G I W +R++ D+ + R +LP+G L L I R R
Sbjct: 23 KGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR-MLLPSGSLFFLRIVHGRKSR 81
Query: 123 GDSALFTC 130
D ++ C
Sbjct: 82 PDEGVYVC 89
>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of
Human Obscurin
Length = 102
Score = 35.4 bits (80), Expect = 0.078, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
SS P F +LR+Q S G + L+CE P+ W + L + +R+++R++
Sbjct: 5 SSGPAHFIGRLRHQESIEGATATLRCELSKAAPVE--WRKGRESL--RDGDRHSLRQD-- 58
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139
G + +L I D+ ++C ++ S+
Sbjct: 59 --GAVCELQICGLAVADAGEYSCVCGEERTSA 88
>pdb|3DX9|B Chain B, Crystal Structure Of The Dm1 Tcr At 2.75a
pdb|3DX9|D Chain D, Crystal Structure Of The Dm1 Tcr At 2.75a
pdb|3DXA|E Chain E, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3DXA|J Chain J, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3DXA|O Chain O, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
Length = 244
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 18/87 (20%)
Query: 59 RNQTSRRGEPSVLQC-------------EAKGEKPIGILWNMNNKRLDPKS--DNRYTIR 103
R++ ++RG+ +C + G+ P + + N +L+ +R++
Sbjct: 8 RHKITKRGQNVTFRCDPISEHNRLYWYRQTLGQGPEFLTYFQNEAQLEKSRLLSDRFSAE 67
Query: 104 EEILPNGVLSDLSIKRTERGDSALFTC 130
P G S L I+RTE+GDSA++ C
Sbjct: 68 R---PKGSFSTLEIQRTEQGDSAMYLC 91
>pdb|3PL6|D Chain D, Structure Of Autoimmune Tcr Hy.1b11 In Complex With
Hla-Dq1 And Mbp 85-99
Length = 268
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 106 ILPNGVLSDLSIKRTERGDSALFTC 130
+ P G +S L I+RTERGDSA++ C
Sbjct: 93 VRPEGSVSTLKIQRTERGDSAVYLC 117
>pdb|2GQH|A Chain A, Solution Structure Of The 15th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 107
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
S+ F LRN+ + G + LQCE P+ W + L + ++Y++R++
Sbjct: 5 SSGARFTEGLRNEEAMEGATATLQCELSKAAPVE--WRKGLEAL--RDGDKYSLRQD--- 57
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEA 146
G + +L I D+ +++C + Q+ +S +T A
Sbjct: 58 -GAVCELQIHGLAMADNGVYSC-VCGQERTSATLTVRA 93
>pdb|2GSX|A Chain A, Complement Receptor Type 2
Length = 951
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 105/272 (38%), Gaps = 47/272 (17%)
Query: 57 KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVL-SDL 115
++R EPS CE + + P IL R + D +I+ P VL +
Sbjct: 370 QIRCNAQGTWEPSAPVCEKECQAPPNILNGQKEDRHMVRFDPGTSIKYSCNPGYVLVGEE 429
Query: 116 SIKRTERG--DSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG-QPSK 172
SI+ T G + C++ + + + +Q+ L K Q+ +++ GEG + S
Sbjct: 430 SIQCTSEGVWTPPVPQCKVAACEATGRQL------LTKPQHQFVRPDVNSSCGEGYKLSG 483
Query: 173 NVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGS 232
+V +P + +I+L C + P P +I+ H E+
Sbjct: 484 SVYQECQGTIP-------------WFMEIRL-CKEITCPPPPVIYNGAHTGSSLEDF--- 526
Query: 233 SEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG----------VIQ 282
P T T GP ++ ++T++ + + ER W+G +Q
Sbjct: 527 --PYGTTVTYTCNP---GPERGVEFSLIGESTIRCTSNDQERGTWSGPAPLCKLSLLAVQ 581
Query: 283 GYYV----GYKETSTDKPFLF-ETVDFSKEEG 309
+V GYK + + P+ + +TV F G
Sbjct: 582 CSHVHIANGYKISGKEAPYFYNDTVTFKCYSG 613
>pdb|2L7U|A Chain A, Structure Of Cel-Pep-Rage V Domain Complex
Length = 105
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 59 RNQTSRRGEPSVLQCEAKGEKPIGIL-WNMNNKR------LDPKSDNRYTIREEILPNG- 110
+N T+R GEP VL+C+ +KP L W +N R L P+ + +LPNG
Sbjct: 4 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGS 63
Query: 111 -VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYE 145
L + I+ D +F C+ ++ + Y
Sbjct: 64 LFLPAVGIQ-----DEGIFRCQAMNRNGKETKSNYR 94
>pdb|2E5E|A Chain A, Solution Structure Of Variable-Type Domain Of Human
Receptor For Advanced Glycation Endproducts
Length = 101
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 59 RNQTSRRGEPSVLQCEAKGEKPIGIL-WNMNNKR------LDPKSDNRYTIREEILPNGV 111
+N T+R GEP VL+C+ +KP L W +N R L P+ + +LPNG
Sbjct: 4 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNG- 62
Query: 112 LSDLSIKRTERGDSALFTCEIKSQKISSQQMTYE 145
L + D +F C+ ++ + Y
Sbjct: 63 --SLFLPAVGIQDEGIFRCQAMNRNGKETKSNYR 94
>pdb|1X4Y|A Chain A, Solution Structure Of The 3rd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 114
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
+ P P +A ++ T+ + W + N I G+Y+ Y+ T +D
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDN-----DS 57
Query: 303 DFSKE--EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMS 341
D+ K+ EG + ++S L+ T Y + +Q N+ G S
Sbjct: 58 DYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFS 98
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 42 FPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYT 101
F L+ +AP E K GE +V+ C+ P I+W + + K D R+
Sbjct: 98 FQKLMFKNAPTPQEFK-------EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 150
Query: 102 IREEILPNGVLSDLSIKRTERGDSALFTCE 131
+L N L IK+T+ G + CE
Sbjct: 151 ----VLSNNYLQIRGIKKTDEG---TYRCE 173
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 42 FPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYT 101
F L+ +AP E K GE +V+ C+ P I+W + + K D R+
Sbjct: 98 FQKLMFKNAPTPQEFK-------EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 150
Query: 102 IREEILPNGVLSDLSIKRTERGDSALFTCE 131
+L N L IK+T+ G + CE
Sbjct: 151 ----VLSNNYLQIRGIKKTDEG---TYRCE 173
>pdb|1WJ3|A Chain A, Solution Structure Of The Fourth Fn3 Domain Of Kiaa1496
Protein
Length = 117
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S TV + T + PS PP ++ ATD L ++W + + GY V Y+
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVL-LNWEQVKAMENESEVTGYKVFYRT 59
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVK 345
+S + + T S E L Y + V+A G G SE+++
Sbjct: 60 SSQNNVQVLNTNKTSAE---------LVLPIKEDYIIEVKATTDGGDGTSSEQIR 105
>pdb|2EKJ|A Chain A, Solution Structures Of The Fn3 Domain Of Human Collagen
Alpha-1(Xx) Chain
Length = 105
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 263 NTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTY 322
++L+VSW+PP G + Y++ Y S P +V G H+TL L+
Sbjct: 22 DSLQVSWTPPL-----GRVLHYWLTYAPASGLGPEKSVSV-----PGARSHVTLPDLQAA 71
Query: 323 TQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQP 356
T+Y V+V A+ G SE V P P
Sbjct: 72 TKYRVLVSAIYAAG---RSEAVSATGQTACPSGP 102
>pdb|2EDT|A Chain A, Solution Structure Of The Ig-Like Domain (3449-3537) From
Human Obscurin
Length = 102
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
SS P +F LRN+ + G ++L CE P+ W + L + +RY +R+E
Sbjct: 5 SSGPAKFTEGLRNEEAVEGATAMLWCELSKVAPVE--WRKGPENL--RDGDRYILRQE-- 58
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEA 146
G +L I D+ + C + Q+ +S +T A
Sbjct: 59 --GTRCELQICGLAMADAGEYLC-VCGQERTSATLTIRA 94
>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 20 Structures
pdb|2MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 10 Structures
Length = 184
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 220 YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG 279
Y + I+A N S P ++ + S P ++V A+ +L +SW PP
Sbjct: 68 YVVSIIAVNGREESPP-----LIGQQATVSDIPRDLEVIASTPTSLLISWEPPAVS---- 118
Query: 280 VIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
++ Y + Y ET + P TV SK T++++K Y++ + A+ G P
Sbjct: 119 -VRYYRITYGETGGNSPVQEFTVPGSKSTA-----TINNIKPGADYTITLYAVTGRGDSP 172
Query: 340 MSEE 343
S +
Sbjct: 173 ASSK 176
>pdb|2CSP|A Chain A, Solution Structure Of The Fniii Domain Of Human
Rim-Binding Protein 2
Length = 130
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 341 SEEVKQYTAEGTPEQPPQDNTCTT-LTSQTIRVSWVSPPLITANGVIKGYKVV-YG 394
S V+ T P PPQD T +T TIRVSW PP++T G+ G V YG
Sbjct: 5 SSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSW-RPPVLTPTGLSNGANVTGYG 59
>pdb|3EW3|B Chain B, The 1:2 Complex Between A Nterminal Elongated Prolactin
And Cellular Domain Of The Rat Prolactin Receptor
pdb|3EW3|C Chain C, The 1:2 Complex Between A Nterminal Elongated Prolactin
And Cellular Domain Of The Rat Prolactin Receptor
Length = 221
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 216 IWKTYHIRIVAENEIGSSEPSD----TVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSP 271
IWK Y I + A N++GSS SD VT + E P +K + L V WSP
Sbjct: 72 IWKIYIITVNATNQMGSSS-SDPLYVDVTYIVEPEPPRNLTLEVKQLKDKKTYLWVKWSP 130
Query: 272 P 272
P
Sbjct: 131 P 131
>pdb|1F6F|B Chain B, Crystal Structure Of The Ternary Complex Between Ovine
Placental Lactogen And The Extracellular Domain Of The
Rat Prolactin Receptor
pdb|1F6F|C Chain C, Crystal Structure Of The Ternary Complex Between Ovine
Placental Lactogen And The Extracellular Domain Of The
Rat Prolactin Receptor
Length = 210
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 216 IWKTYHIRIVAENEIGSSEPSD----TVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSP 271
IWK Y I + A N++GSS SD VT + E P +K + L V WSP
Sbjct: 71 IWKIYIITVNATNQMGSSS-SDPLYVDVTYIVEPEPPRNLTLEVKQLKDKKTYLWVKWSP 129
Query: 272 P 272
P
Sbjct: 130 P 130
>pdb|3NPZ|B Chain B, Prolactin Receptor (Prlr) Complexed With The Natural
Hormone (Prl)
pdb|3NPZ|C Chain C, Prolactin Receptor (Prlr) Complexed With The Natural
Hormone (Prl)
Length = 220
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 216 IWKTYHIRIVAENEIGSSEPSD----TVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSP 271
IWK Y I + A N++GSS SD VT + E P +K + L V WSP
Sbjct: 71 IWKIYIITVNATNQMGSSS-SDPLYVDVTYIVEPEPPRNLTLEVKQLKDKKTYLWVKWSP 129
Query: 272 P 272
P
Sbjct: 130 P 130
>pdb|3S35|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S36|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S37|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
Length = 122
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 66 GEPSVLQCEAKGEKPIGILWN-------MNNKRL---DPKSDNRYTIREEILPNGVLSDL 115
GE VL C A+ E +GI +N +K+L D K+ + +++ LS L
Sbjct: 23 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK------FLSTL 76
Query: 116 SIKRTERGDSALFTCEIKSQKISSQQMTY 144
+I R D L+TC S ++ + T+
Sbjct: 77 TIDGVTRSDQGLYTCAASSGLMTKKNSTF 105
>pdb|3M7M|X Chain X, Crystal Structure Of Monomeric Hsp33
Length = 235
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 182 VPARIASFND-NFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDT 238
+PA+ A +D + AT TE IK L + +PA E++W+ YH E E+ +P D
Sbjct: 177 MPAQNAQQDDFDHLATLTETIKTEEL-LTLPANEVLWRLYH-----EEEVTVYDPQDV 228
>pdb|2DBJ|A Chain A, Solution Structures Of The Fn3 Domain Of Human Proto-
Oncogene Tyrosine-Protein Kinase Mer Precursor
Length = 124
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 19/125 (15%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKV---EATDQNTLKVSWSPPERDHWNGVIQGYYVG 287
GSS S + T E APS P ++ V E++D + + W P +G + GY +
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDN--VDIRWMKPPTKQQDGELVGYRIS 58
Query: 288 YKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQY-----SVVVQALNKLGPGPMSE 342
+ ++++ SKE +E S + Q +V + A+ + G GP S+
Sbjct: 59 H---------VWQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSD 109
Query: 343 EVKQY 347
VK +
Sbjct: 110 PVKIF 114
>pdb|1HW7|A Chain A, Hsp33, Heat Shock Protein With Redox-Regulated Chaperone
Activity
Length = 255
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 182 VPARIASFND-NFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDT 238
+PA+ A +D + AT TE IK L + +PA E++W+ YH E E+ +P D
Sbjct: 177 MPAQNAQQDDFDHLATLTETIKTEEL-LTLPANEVLWRLYH-----EEEVTVYDPQDV 228
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 252 PTHIKVEATDQNTLKVSWS--PPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
P +++E +L VSWS PP++ + Y V Y++ + + + EG
Sbjct: 441 PPKVRLEGRSTTSLSVSWSIPPPQQSR----VWKYEVTYRKKGDSNSY-----NVRRTEG 491
Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE--EVKQYTAEGT 352
+TL L T Y V VQAL + G G S+ E + + EG+
Sbjct: 492 --FSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTLSPEGS 534
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 252 PTHIKVEATDQNTLKVSWS--PPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
P +++E +L VSWS PP++ + Y V Y++ + + + EG
Sbjct: 441 PPKVRLEGRSTTSLSVSWSIPPPQQSR----VWKYEVTYRKKGDSNSY-----NVRRTEG 491
Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE--EVKQYTAEGT 352
+TL L T Y V VQAL + G G S+ E + + EG+
Sbjct: 492 --FSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTLSPEGS 534
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 32.0 bits (71), Expect = 0.83, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 61 QTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRT 120
Q + GE +V+ C+ P I+W + + K D R+ +L N L IK+T
Sbjct: 11 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI----VLSNNYLQIRGIKKT 66
Query: 121 ERGDSALFTCE 131
+ G + CE
Sbjct: 67 DEGT---YRCE 74
>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From
Human Obscurin
Length = 113
Score = 32.0 bits (71), Expect = 0.86, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 45 LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
L + + P +F LRN+ + G +VL+CE P+ W ++ L + +R+++R+
Sbjct: 13 LTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAPVE--WWKGHETL--RDGDRHSLRQ 68
Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139
+ G +L I+ D+ + C ++ S+
Sbjct: 69 D----GARCELQIRGLVAEDAGEYLCMCGKERTSA 99
>pdb|1TTF|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
pdb|1TTG|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
Length = 94
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 252 PTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKE 311
P ++V A +L +SW P ++ Y + Y ET + P TV G +
Sbjct: 5 PRDLEVVAATPTSLLISWDAPAV-----TVRYYRITYGETGGNSPVQEFTV-----PGSK 54
Query: 312 HHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE 343
T+S LK Y++ V A+ G P S +
Sbjct: 55 STATISGLKPGVDYTITVYAVTGRGDSPASSK 86
>pdb|2X1X|R Chain R, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2 In A Tetragonal Crystal Form
pdb|2X1W|L Chain L, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|M Chain M, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|N Chain N, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|O Chain O, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
Length = 213
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 66 GEPSVLQCEAKGEKPIGILWNM---NNKRLDPKSDNR-YTIREEILPNGVLSDLSIKRTE 121
GE VL C A+ E +GI +N ++K K NR + LS L+I
Sbjct: 120 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 179
Query: 122 RGDSALFTCEIKSQKISSQQMTY 144
R D L+TC S ++ + T+
Sbjct: 180 RSDQGLYTCAASSGLMTKKNSTF 202
>pdb|1X5Z|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Protein Tyrosine Phosphatase, Receptor Type, D
Isoform 4 Variant
Length = 115
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 28/128 (21%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S + ++T P G P + K E + ++ +SW+PP D I Y + YK+
Sbjct: 1 GSSGSSGDIQVITQTGVP-GQPLNFKAEPESETSILLSWTPPRSD----TIANYELVYKD 55
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLT--------LSSLKTYTQYSVVVQALNKLGPGPMSE 342
E G+E +T L LK + Y + A + G G +
Sbjct: 56 ---------------GEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTA 100
Query: 343 EVKQYTAE 350
E+ T +
Sbjct: 101 EISARTMQ 108
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 47/242 (19%), Positives = 97/242 (40%), Gaps = 37/242 (15%)
Query: 54 FEIKLRNQTS-RRGEPSVLQCE---AKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
F+ + R+ S RRG+ VL C GE ++N DNR + +E
Sbjct: 103 FKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFN----EYPSYQDNRRFVSQET--- 155
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
+L I + E+ D +TC + + +++ ++ + L + + + +GE +
Sbjct: 156 ---GNLYIAKVEKSDVGNYTC-VVTNTVTNHKVLGPPTPLILRNDGV--------MGEYE 203
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENE 229
P V + VPA + +KL C +G P P I+W+ + +A +
Sbjct: 204 PKIEVQFPET--VPAEKGT-----------TVKLECFALGNPVPTILWRRADGKPIAR-K 249
Query: 230 IGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYK 289
+ + + I ++ +G + + +N K + + +W +I +V +
Sbjct: 250 ARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAME 309
Query: 290 ET 291
E+
Sbjct: 310 ES 311
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 47/242 (19%), Positives = 97/242 (40%), Gaps = 37/242 (15%)
Query: 54 FEIKLRNQTS-RRGEPSVLQCE---AKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
F+ + R+ S RRG+ VL C GE ++N DNR + +E
Sbjct: 104 FKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFN----EYPSYQDNRRFVSQET--- 156
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
+L I + E+ D +TC + + +++ ++ + L + + + +GE +
Sbjct: 157 ---GNLYIAKVEKSDVGNYTC-VVTNTVTNHKVLGPPTPLILRNDGV--------MGEYE 204
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENE 229
P V + VPA + +KL C +G P P I+W+ + +A +
Sbjct: 205 PKIEVQFPET--VPAEKGT-----------TVKLECFALGNPVPTILWRRADGKPIAR-K 250
Query: 230 IGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYK 289
+ + + I ++ +G + + +N K + + +W +I +V +
Sbjct: 251 ARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAME 310
Query: 290 ET 291
E+
Sbjct: 311 ES 312
>pdb|1FNF|A Chain A, Fragment Of Human Fibronectin Encompassing Type-Iii
Repeats 7 Through 10
Length = 368
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 252 PTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKE 311
P ++V A +L +SW P ++ Y + Y ET + P TV SK
Sbjct: 279 PRDLEVVAATPTSLLISWDAPAV-----TVRYYRITYGETGGNSPVQEFTVPGSKSTA-- 331
Query: 312 HHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE 343
T+S LK Y++ V A+ G P S +
Sbjct: 332 ---TISGLKPGVDYTITVYAVTGRGDSPASSK 360
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 16/152 (10%)
Query: 248 PSGPPTHIKVEAT-DQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
P PPT++ +EA D L VSW ER I GY + T+ + E V +
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSW---ERSTTPD-ITGYRITTTPTNGQQGNSLEEVVHAD 56
Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG-PMSEEVKQYTAEGTPEQPPQDNTCTTL 365
+ T +L +Y+V V + P+S+ + PP D T +
Sbjct: 57 QSS----CTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVP------PPTDLRFTNI 106
Query: 366 TSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
T+RV+W PP I + Y V D
Sbjct: 107 GPDTMRVTWAPPPSIDLTNFLVRYSPVKNEED 138
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 28/147 (19%)
Query: 252 PTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYK-ETSTDKPFLFETVDFSKEEGK 310
PT I N+ V W P I GY + + E + +P +E+
Sbjct: 189 PTGIDFSDITANSFTVHWIAPR-----ATITGYRIRHHPEHFSGRP---------REDRV 234
Query: 311 EHH---LTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTS 367
H +TL++L T+Y V + ALN P+ + T P+D T
Sbjct: 235 PHSRNSITLTNLTPGTEYVVSIVALNGREESPL-----LIGQQSTVSDVPRDLEVVAATP 289
Query: 368 QTIRVSWVSPPLITANGVIKGYKVVYG 394
++ +SW +P + ++ Y++ YG
Sbjct: 290 TSLLISWDAPAV-----TVRYYRITYG 311
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
SS PP NQT VL C A G ILW + + + R + L
Sbjct: 5 SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDS-----RIKQL 59
Query: 108 PNGVLSDLSIKRTERGDSALFTC 130
NGV L I+ + GD+ +TC
Sbjct: 60 ENGV---LQIRYAKLGDTGRYTC 79
>pdb|3T04|D Chain D, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX
Length = 103
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 252 PTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKE 311
PT ++V +LK+SW W V + Y + Y ET D P TV G
Sbjct: 11 PTKLEVVDATPTSLKISWDA-YYSSWQNV-KYYRITYGETGGDSPVQEFTV-----PGYY 63
Query: 312 HHLTLSSLKTYTQYSVVVQALNKLGPG 338
T+S LK Y++ V A + PG
Sbjct: 64 STATISGLKPGVDYTITVYAYDTFFPG 90
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 220 YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG 279
Y I + N+ S P + TA +APS +++ AT N+L VSW PP
Sbjct: 178 YKIYLYTLNDNARSSPV-VIDASTAIDAPS----NLRFLATTPNSLLVSWQPPR-----A 227
Query: 280 VIQGYYVGYKETST--------DKPFLFETVDFSKEEGKEHHLTLSSLK 320
I GY + Y++ + +P + E E G E+ + + +LK
Sbjct: 228 RITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALK 276
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 21/154 (13%)
Query: 246 EAPSGP-PTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDF 304
+ P+ P PT +K +L W+PP N + GY V + T +K + ++
Sbjct: 17 QGPAIPAPTDLKFTQVTPTSLSAQWTPP-----NVQLTGYRV--RVTPKEKTGPMKEINL 69
Query: 305 SKEEGKEHHLTLSSLKTYTQYSVVVQAL-NKLGPGPMSEEVKQYTAEGTPEQPPQDNTCT 363
+ + + +S L T+Y V V AL + L P V T E PP+ T
Sbjct: 70 APD---SSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVT--TLENV--SPPRRARVT 122
Query: 364 TLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
T TI +SW T I G++V P++
Sbjct: 123 DATETTITISWR-----TKTETITGFQVDAVPAN 151
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 252 PTHIKVEATDQNTLKVSWS--PPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
P +++E +L VSWS PP++ + Y V Y++ + + + EG
Sbjct: 444 PPKVRLEGRSTTSLSVSWSIPPPQQSR----VWKYEVTYRKKGDSNSY-----NVRRTEG 494
Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE--EVKQYTAEG 351
+TL L T Y V VQAL + G G S+ E + + EG
Sbjct: 495 --FSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTLSPEG 536
>pdb|1I7F|A Chain A, Crystal Structure Of The Hsp33 Domain With Constitutive
Chaperone Activity
Length = 292
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 183 PARIASFND-NFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDT 238
PA+ A +D + AT TE IK L + +PA E++W+ YH E E+ +P D
Sbjct: 176 PAQNAQQDDFDHLATLTETIKTEEL-LTLPANEVLWRLYH-----EEEVTVYDPQDV 226
>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 108
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
SS P F L+ + + G + LQCE P+ W + L + RY+++++
Sbjct: 5 SSGPARFTQDLKTKEASEGATATLQCELSKVAPVE--WKKGPETL--RDGGRYSLKQD-- 58
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139
G +L I D+ ++C ++ S+
Sbjct: 59 --GTRCELQIHDLSVADAGEYSCMCGQERTSA 88
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 220 YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG 279
Y I + N+ S P + TA +APS +++ AT N+L VSW PP
Sbjct: 159 YKIYLYTLNDNARSSPV-VIDASTAIDAPS----NLRFLATTPNSLLVSWQPPR-----A 208
Query: 280 VIQGYYVGYKETST--------DKPFLFETVDFSKEEGKEHHLTLSSLK 320
I GY + Y++ + +P + E E G E+ + + +LK
Sbjct: 209 RITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALK 257
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 252 PTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKE 311
PT +K +L W+PP N + GY V + T +K + ++ + +
Sbjct: 5 PTDLKFTQVTPTSLSAQWTPP-----NVQLTGYRV--RVTPKEKTGPMKEINLAPD---S 54
Query: 312 HHLTLSSLKTYTQYSVVVQAL-NKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTI 370
+ +S L T+Y V V AL + L P V T E PP+ T T TI
Sbjct: 55 SSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVT--TLENV--SPPRRARVTDATETTI 110
Query: 371 RVSWVSPPLITANGVIKGYKVVYGPSD 397
+SW T I G++V P++
Sbjct: 111 TISWR-----TKTETITGFQVDAVPAN 132
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 56 IKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLD----PKSDNRYTIREEILPNGV 111
I+L+N+T+ L C+A+GE I W + +D + D R E+
Sbjct: 99 IQLKNETTYENGQVTLVCDAEGEPIPEITW---KRAVDGFTFTEGDKSLDGRIEVKGQHG 155
Query: 112 LSDLSIKRTERGDSALFTCEIKSQKISSQQMTY 144
S L IK + DS + CE S+ Q+ Y
Sbjct: 156 SSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMY 188
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 42/159 (26%)
Query: 60 NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKR 119
N T+ RGE C A G I W N K ++ + +Y ++ G ++L+++
Sbjct: 13 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIE--ENEKYILK------GSNTELTVRN 64
Query: 120 TERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPS 179
D + C ++ +G +KQ ++ V + P
Sbjct: 65 IINSDGGPYVCRATNK-----------AGEDEKQAFL----------------QVFVQP- 96
Query: 180 NRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
I N T + L C G P PEI WK
Sbjct: 97 -----HIIQLK-NETTYENGQVTLVCDAEGEPIPEITWK 129
>pdb|3D1M|C Chain C, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3D1M|D Chain D, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3N1F|C Chain C, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1F|D Chain D, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1Q|C Chain C, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|D Chain D, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|F Chain F, Crystal Structure Of Dhhn Bound To Cdofn3
Length = 102
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 249 SGPPTHIK-VEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
+GP HI EA + + W+ + N IQG+Y+ Y+ T +D D+ ++
Sbjct: 6 TGP--HIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDND-----SDYKRD 58
Query: 308 --EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMS 341
EG + + L+ T Y + +Q N+ G S
Sbjct: 59 VVEGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFS 94
>pdb|2OCF|D Chain D, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Estradiol And The E2#23 Fn3 Monobody
Length = 121
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 252 PTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKE 311
PT ++V A +L +SW P ++ Y + Y ET + P TV SK
Sbjct: 32 PTKLEVVAATPTSLLISWDAPAVT-----VRYYRITYGETGGNSPVQEFTVPGSKSTA-- 84
Query: 312 HHLTLSSLKTYTQYSVVVQALNKL 335
T+S LK Y++ V A+ L
Sbjct: 85 ---TISGLKPGVDYTITVYAVTGL 105
>pdb|1N5Y|H Chain H, Hiv-1 Reverse Transcriptase Crosslinked To Post-
Translocation Aztmp-Terminated Dna (Complex P)
pdb|1N6Q|H Chain H, Hiv-1 Reverse Transcriptase Crosslinked To Pre-
Translocation Aztmp-Terminated Dna (Complex N)
pdb|1T03|H Chain H, Hiv-1 Reverse Transcriptase Crosslinked To Tenofovir
Terminated Template-Primer (Complex P)
pdb|1R0A|H Chain H, Crystal Structure Of Hiv-1 Reverse Transcriptase
Covalently Tethered To Dna Template-primer Solved To 2.8
Angstroms
pdb|3KLH|D Chain D, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Post-Translocation
Aztmp-Terminated Dna (Complex P)
Length = 225
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 24/148 (16%)
Query: 62 TSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTE 121
TS G + Q KG + + +W ++ R +P +R T+ ++ N L++ E
Sbjct: 31 TSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAF--LNMMTVE 88
Query: 122 RGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNR 181
D+A++ C Q+ I VT S GQ +VT+S +
Sbjct: 89 TADTAIYYC---------------------AQSAITSVTDSAMDHWGQ-GTSVTVSSAKT 126
Query: 182 VPARIASFNDNFTATYTEDIKLPCLTVG 209
P + A + L CL G
Sbjct: 127 TPPSVYPLAPGSAAQTNSMVTLGCLVKG 154
>pdb|3NCC|B Chain B, A Human Prolactin Receptor Antagonist In Complex With The
Mutant Extracellular Domain H188a Of The Human Prolactin
Receptor
pdb|3NCE|B Chain B, A Mutant Human Prolactin Receptor Antagonist H27a In
Complex With The Mutant Extracellular Domain H188a Of
The Human Prolactin Receptor
pdb|3NCF|B Chain B, A Mutant Human Prolactin Receptor Antagonist H30a In
Complex With The Mutant Extracellular Domain H188a Of
The Human Prolactin Receptor
Length = 210
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATD----QNTLKVSWSP 271
+W+TY + + A N++GSS SD + + PP + VE + L + WSP
Sbjct: 71 MWRTYIMMVNATNQMGSSF-SDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSP 129
Query: 272 P 272
P
Sbjct: 130 P 130
>pdb|3MZG|B Chain B, Crystal Structure Of A Human Prolactin Receptor Antagonist
In Complex With The Extracellular Domain Of The Human
Prolactin Receptor
pdb|3N06|B Chain B, A Mutant Human Prolactin Receptor Antagonist H27a In
Complex With The Extracellular Domain Of The Human
Prolactin Receptor
pdb|3N0P|B Chain B, A Mutant Human Prolactin Receptor Antagonist H30a In
Complex With The Extracellular Domain Of The Human
Prolactin Receptor
pdb|3NCB|B Chain B, A Mutant Human Prolactin Receptor Antagonist H180a In
Complex With The Extracellular Domain Of The Human
Prolactin Receptor
Length = 210
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATD----QNTLKVSWSP 271
+W+TY + + A N++GSS SD + + PP + VE + L + WSP
Sbjct: 71 MWRTYIMMVNATNQMGSSF-SDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSP 129
Query: 272 P 272
P
Sbjct: 130 P 130
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
SS PP NQT ++L+C+A G+ P+ ++ + P D R TI+E+
Sbjct: 5 SSGPPIILQGPANQTLAVDGTALLKCKATGD-PLPVISWLKEGFTFPGRDPRATIQEQ-- 61
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEA 146
L IK D+ +TC S SS + ++ A
Sbjct: 62 -----GTLQIKNLRISDTGTYTCVATS---SSGETSWSA 92
>pdb|1WFO|A Chain A, The Eighth Fn3 Domain Of Human Sidekick-2
Length = 130
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 144 YEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNR 181
Y A+GLK + Y+F +TA T G G+ ++ + ++ R
Sbjct: 87 YTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKR 124
>pdb|2CRY|A Chain A, Solution Structure Of The Fifth Ig-Like Domain Of Human
Kin Of Irre Like 3
Length = 122
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 40 NGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDN 98
+G L + PP + Q + GE ++C + P I W+ L+ +
Sbjct: 3 SGSSGTLTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSG 61
Query: 99 RYTIREEILPNGVLSDLSIKRTERGD-SALFTC 130
RYT+ GV+S L+I R D ++ C
Sbjct: 62 RYTVETISTEEGVISTLTISNIVRADFQTIYNC 94
>pdb|3QWQ|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Epidermal Growth Factor Receptor In Complex With An
Adnectin
Length = 114
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 252 PTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKE 311
P ++V A +L +SW D G Q Y + Y ET + P TV G
Sbjct: 7 PRDLEVVAATPTSLLISW-----DSGRGSYQYYRITYGETGGNSPVQEFTV-----PGPV 56
Query: 312 HHLTLSSLKTYTQYSVVVQALNKLGP 337
H T+S LK Y++ V A+ P
Sbjct: 57 HTATISGLKPGVDYTITVYAVTDHKP 82
>pdb|2HMI|D Chain D, Hiv-1 Reverse TranscriptaseFRAGMENT OF FAB 28DNA COMPLEX
pdb|1HYS|D Chain D, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With A Polypurine Tract Rna:dna
pdb|1J5O|H Chain H, Crystal Structure Of Met184ile Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Double Stranded Dna
Template- Primer
Length = 220
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 62 TSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTE 121
TS G + Q KG + + +W ++ R +P +R T+ ++ N L++ E
Sbjct: 31 TSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAF--LNMMTVE 88
Query: 122 RGDSALFTC 130
D+A++ C
Sbjct: 89 TADTAIYYC 97
>pdb|1BP3|B Chain B, The Xray Structure Of A Growth Hormone-Prolactin Receptor
Complex
Length = 211
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATD----QNTLKVSWSP 271
+W+TY + + A N++GSS SD + + PP + VE + L + WSP
Sbjct: 71 MWRTYIMMVNATNQMGSSF-SDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSP 129
Query: 272 P 272
P
Sbjct: 130 P 130
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAEN--EIGSSEPSDTVTILTAEEAPS 249
+ T E +L C VG P P+I W + ++ ++ S + T+T++T E+
Sbjct: 16 DVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDE 75
Query: 250 GPPTHI 255
G T I
Sbjct: 76 GVYTCI 81
>pdb|3D48|R Chain R, Crystal Structure Of A Prolactin Receptor Antagonist Bound
To The Extracellular Domain Of The Prolactin Receptor
Length = 211
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATD----QNTLKVSWSP 271
+W+TY + + A N++GSS SD + + PP + VE + L + WSP
Sbjct: 72 MWRTYIMMVNATNQMGSSF-SDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSP 130
Query: 272 P 272
P
Sbjct: 131 P 131
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGV 111
P F + T + G+ + C+ G + W ++ K + P S ++ +RE NGV
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRE----NGV 65
Query: 112 LSDLSIKRTERGDSALFTC 130
S L I+ D+ ++TC
Sbjct: 66 HS-LIIEPVTSRDAGIYTC 83
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 199 EDIKLPCLTVGVPAPEIIW 217
+D+ +PC G+PAP ++W
Sbjct: 325 QDVTIPCKVTGLPAPNVVW 343
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 521 EDIKLPCLTVGVPAPEIIW 539
+D+ +PC G+PAP ++W
Sbjct: 325 QDVTIPCKVTGLPAPNVVW 343
>pdb|3T1W|A Chain A, Structure Of The Four-Domain Fragment Fn7b89 Of Oncofetal
Fibronectin
Length = 375
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 78/187 (41%), Gaps = 25/187 (13%)
Query: 220 YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG 279
Y I ++ G S P T LT + A PPT ++ +T++V+W+PP
Sbjct: 163 YDISVITLINGGESAP----TTLTQQTA-VPPPTDLRFTNIGPDTMRVTWAPPPSID--- 214
Query: 280 VIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
+ + V Y ++ ++ S ++ + L++L T+Y V V ++ +
Sbjct: 215 -LTNFLVRYSPVKNEEDVAELSISPS-----DNAVVLTNLLPGTEYVVSVSSVYE----- 263
Query: 340 MSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW 399
E + T P + +T+ + V W++P I GY++ + P + +
Sbjct: 264 QHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHP-EHF 317
Query: 400 YGDPKTD 406
G P+ D
Sbjct: 318 SGRPRED 324
>pdb|1FNA|A Chain A, Crystal Structure Of The Tenth Type Iii Cell Adhesion
Module Of Human Fibronectin
Length = 91
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 255 IKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHL 314
++V A +L +SW P ++ Y + Y ET + P TV SK
Sbjct: 3 LEVVAATPTSLLISWDAPAV-----TVRYYRITYGETGGNSPVQEFTVPGSKSTA----- 52
Query: 315 TLSSLKTYTQYSVVVQALNKLGPGPMSEE 343
T+S LK Y++ V A+ G P S +
Sbjct: 53 TISGLKPGVDYTITVYAVTGRGDSPASSK 81
>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa0343 Protein
Length = 127
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 255 IKVEATDQ--NTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEH 312
+E TDQ ++++SW+P D N I + + Y E + KP L+ E
Sbjct: 21 FDLELTDQLDKSVQLSWTP--GDDNNSPITKFIIEY-EDAMHKPGLWH---HQTEVSGTQ 74
Query: 313 HLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGT 352
+L Y YS V A+N +G SE +QY + +
Sbjct: 75 TTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKAS 114
>pdb|2EDE|A Chain A, Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 114
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 267 VSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYS 326
VSW PP NG I Y + Y + DK + G + L T Y
Sbjct: 29 VSWQPPLEA--NGKITAYILFY---TLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYY 83
Query: 327 VVVQALNKLGPGPMSEEV 344
+QA N G GP+S+ +
Sbjct: 84 FRIQARNSKGVGPLSDPI 101
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 45 LLLSSAPPEFEI--KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
+++ + PP + K N T+ RGE C A G I W N K ++ + +Y +
Sbjct: 90 IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE--ENEKYIL 147
Query: 103 REEILPNGVLSDLSIKRTERGDSALFTC 130
+ G ++L+++ D + C
Sbjct: 148 K------GSNTELTVRNIINSDGGPYVC 169
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 45 LLLSSAPPEFEI--KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
+++ + PP + K N T+ RGE C A G I W N K ++ + +Y +
Sbjct: 186 IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE--ENEKYIL 243
Query: 103 REEILPNGVLSDLSIKRTERGDSALFTC 130
+ G ++L+++ D + C
Sbjct: 244 K------GSNTELTVRNIINSDGGPYVC 265
>pdb|3TEU|A Chain A, Crystal Structure Of Fibcon
Length = 98
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 357 PQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPK 404
P D T +T +I VSW P + I GY++ Y PS+ G+PK
Sbjct: 5 PTDLQVTNVTDTSITVSWTPP-----SATITGYRITYTPSN-GPGEPK 46
>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of
Slow Type Myosin-Binding Protein C
Length = 120
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYV 286
GPP +K+E + ++W+PP +D N I GY +
Sbjct: 19 GPPQIVKIEDVWGENVALTWTPP-KDDGNAAITGYTI 54
>pdb|2DB8|A Chain A, Solution Structures Of The Fn3 Domain Of Human Tripartite
Motif Protein 9
Length = 110
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 309 GKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGT 352
GKE T+ L + Y+ V+A NK G P S+ + T+EG+
Sbjct: 62 GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGS 105
>pdb|1BQU|A Chain A, Cytokyne-Binding Region Of Gp130
pdb|1BQU|B Chain B, Cytokyne-Binding Region Of Gp130
Length = 215
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 221 HIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQ--NTLKVSWSPPERDHWN 278
+ + AEN +G SD + + PP ++ V +++ + LK++W+ P +
Sbjct: 77 EVWVEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIK--S 133
Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG 338
+I Y + Y+ T + + T+ LK +T+Y ++ + + G G
Sbjct: 134 VIILKYNIQYR---TKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKG 190
Query: 339 ---PMSEEVKQYTAEGTPEQPP 357
SEE T E P + P
Sbjct: 191 YWSDWSEEASGITYEDRPSKEP 212
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 39 FNGFPPLLLSSAPPEFEIKLRNQTSRR-----GEPSVLQCEAKGEKPIGILWNMNNKRL- 92
F FP +LL + ++R++ +++ G C A G+ P ILW K L
Sbjct: 368 FKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLV 427
Query: 93 DPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC 130
KS+ R T + P+G L ++ + D+ + C
Sbjct: 428 SAKSNGRLT----VFPDGT---LEVRYAQVQDNGTYLC 458
>pdb|2M2D|A Chain A, Human Programmed Cell Death 1 Receptor
Length = 118
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 91 RLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC 130
R P D+R+ + + LPNG +S+ R R DS + C
Sbjct: 54 RSQPGQDSRFRVTQ--LPNGRDFHMSVVRARRNDSGTYLC 91
>pdb|2EDQ|A Chain A, Solution Structure Of The Ig-Like Domain (3713-3806) Of
Human Obscurin
Length = 107
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 58 LRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSI 117
LRN+ + G+ + L CE P+ W ++ L + +R+++R++ G +L I
Sbjct: 15 LRNEEATEGDTATLWCELSKAAPVE--WRKGHETL--RDGDRHSLRQD----GSRCELQI 66
Query: 118 KRTERGDSALFTCEIKSQKISSQQMTYEA 146
+ D+ ++C + Q+ +S +T A
Sbjct: 67 RGLAVVDAGEYSC-VCGQERTSATLTVRA 94
>pdb|2GEE|A Chain A, Crystal Structure Of Human Type Iii Fibronectin
Extradomain B And Domain 8
Length = 203
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 14/146 (9%)
Query: 252 PTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKE 311
PT + +++ + W+P + I GY + P + VD S
Sbjct: 26 PTDLSFVDITDSSIGLRWTPLN----SSTIIGYRITVVAAGEGIPIFEDFVDSSV----- 76
Query: 312 HHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIR 371
+ T++ L+ Y + V + G E + T PP D T + T+R
Sbjct: 77 GYYTVTGLEPGIDYDISVYTVKNGG-----ESTPTTLTQQTAVPPPTDLRFTNIGPDTMR 131
Query: 372 VSWVSPPLITANGVIKGYKVVYGPSD 397
V+W PP I + Y V D
Sbjct: 132 VTWAPPPSIDLTNFLVRYSPVKNEED 157
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 82/224 (36%), Gaps = 37/224 (16%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
PP F + ++Q G + C+A G+ + WN K+++ + R+ E G
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ---RFETIEFDESAG 62
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
+ + RT R D ++ C ++ S ++T A V + G P
Sbjct: 63 AVLRIQPLRTPR-DENVYECVAQN---SVGEITVHAK---------LTVLREDQLPSGFP 109
Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRI--VAEN 228
N+ + P +V R T + C G P PEI W + + A N
Sbjct: 110 --NIDMGPQLKVVER------------TRTATMLCAASGNPDPEITWFKDFLPVDPSASN 155
Query: 229 EIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPP 272
S + I ++EE G K E N+ V +S P
Sbjct: 156 GRIKQLRSGALQIESSEETDQG-----KYECVATNSAGVRYSSP 194
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 82/224 (36%), Gaps = 37/224 (16%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
PP F + ++Q G + C+A G+ + WN K+++ + R+ E G
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ---RFETIEFDESAG 62
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
+ + RT R D ++ C ++ S ++T A V + G P
Sbjct: 63 AVLRIQPLRTPR-DENVYECVAQN---SVGEITVHAK---------LTVLREDQLPSGFP 109
Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRI--VAEN 228
N+ + P +V R T + C G P PEI W + + A N
Sbjct: 110 --NIDMGPQLKVVER------------TRTATMLCAASGNPDPEITWFKDFLPVDPSASN 155
Query: 229 EIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPP 272
S + I ++EE G K E N+ V +S P
Sbjct: 156 GRIKQLRSGALQIESSEETDQG-----KYECVATNSAGVRYSSP 194
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 82/224 (36%), Gaps = 37/224 (16%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
PP F + ++Q G + C+A G+ + WN K+++ + R+ E G
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ---RFETIEFDESAG 62
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
+ + RT R D ++ C ++ S ++T A V + G P
Sbjct: 63 AVLRIQPLRTPR-DENVYECVAQN---SVGEITVHAK---------LTVLREDQLPSGFP 109
Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRI--VAEN 228
N+ + P +V R T + C G P PEI W + + A N
Sbjct: 110 --NIDMGPQLKVVER------------TRTATMLCAASGNPDPEITWFKDFLPVDPSASN 155
Query: 229 EIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPP 272
S + I ++EE G K E N+ V +S P
Sbjct: 156 GRIKQLRSGALQIESSEETDQG-----KYECVATNSAGVRYSSP 194
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
S+ P L++ T + +A GE +W + K + +Y + E+
Sbjct: 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAI--TQGGKYKLSED--K 59
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQK---ISSQQMTYEA 146
G L I +T+ DS L+TC +K+ SS ++T +A
Sbjct: 60 GGFF--LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,833,034
Number of Sequences: 62578
Number of extensions: 862080
Number of successful extensions: 1658
Number of sequences better than 100.0: 151
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 1426
Number of HSP's gapped (non-prelim): 300
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)