Query psy3718
Match_columns 543
No_of_seqs 226 out of 2406
Neff 10.8
Searched_HMMs 46136
Date Fri Aug 16 23:46:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 2.4E-47 5.3E-52 386.1 40.9 428 3-504 457-911 (1051)
2 KOG4221|consensus 100.0 6.4E-47 1.4E-51 380.4 38.0 356 16-396 288-759 (1381)
3 KOG4221|consensus 100.0 2.6E-44 5.6E-49 361.7 45.7 434 12-498 186-803 (1381)
4 KOG3513|consensus 100.0 1.2E-39 2.5E-44 330.6 36.8 375 2-396 271-759 (1051)
5 KOG4222|consensus 100.0 7.6E-33 1.6E-37 277.9 27.7 457 12-502 180-839 (1281)
6 KOG4222|consensus 99.9 4.2E-24 9E-29 215.6 21.6 365 12-396 270-791 (1281)
7 KOG4194|consensus 99.8 8.2E-19 1.8E-23 166.6 13.8 116 19-140 574-696 (873)
8 KOG0196|consensus 99.7 7.1E-16 1.5E-20 151.7 19.2 190 247-501 330-529 (996)
9 PHA02826 IL-1 receptor-like pr 99.7 8.7E-16 1.9E-20 136.5 12.1 104 18-135 97-210 (227)
10 PHA02785 IL-beta-binding prote 99.6 4.5E-15 9.8E-20 141.1 15.6 136 2-138 156-317 (326)
11 PHA02785 IL-beta-binding prote 99.6 4.6E-15 9.9E-20 141.1 14.5 127 2-139 61-203 (326)
12 cd05762 Ig8_MLCK Eighth immuno 99.6 2.3E-15 4.9E-20 115.8 9.6 91 52-149 1-91 (98)
13 cd05851 Ig3_Contactin-1 Third 99.6 3.7E-15 8E-20 112.4 8.3 79 51-139 1-79 (88)
14 cd05747 Ig5_Titin_like M5, fif 99.6 1.7E-14 3.6E-19 110.2 9.4 84 50-139 2-85 (92)
15 cd05848 Ig1_Contactin-5 First 99.5 3.5E-14 7.6E-19 108.5 9.7 85 51-143 1-89 (94)
16 cd05850 Ig1_Contactin-2 First 99.5 6E-14 1.3E-18 107.3 10.2 87 51-145 1-91 (94)
17 cd05866 Ig1_NCAM-2 First immun 99.5 9.2E-14 2E-18 104.8 10.2 86 54-146 3-89 (92)
18 cd05758 Ig5_KIRREL3-like Fifth 99.5 1.5E-13 3.3E-18 106.2 10.3 89 50-139 1-91 (98)
19 cd05865 Ig1_NCAM-1 First immun 99.5 1.7E-13 3.6E-18 104.6 10.2 82 54-139 3-87 (96)
20 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 1.6E-13 3.5E-18 102.8 9.9 75 60-139 4-78 (86)
21 cd05737 Ig_Myomesin_like_C C-t 99.5 9.3E-14 2E-18 106.1 8.7 78 57-139 7-84 (92)
22 cd07693 Ig1_Robo First immunog 99.5 1.7E-13 3.6E-18 107.2 10.2 95 51-146 1-97 (100)
23 cd05849 Ig1_Contactin-1 First 99.5 1.4E-13 2.9E-18 104.7 9.0 85 51-144 1-89 (93)
24 KOG4194|consensus 99.5 1.2E-13 2.7E-18 131.9 10.2 114 17-138 667-786 (873)
25 cd04975 Ig4_SCFR_like Fourth i 99.5 3E-13 6.4E-18 104.1 10.4 80 59-139 11-91 (101)
26 PF07679 I-set: Immunoglobulin 99.5 2.2E-13 4.7E-18 104.1 9.4 82 52-139 1-82 (90)
27 cd05728 Ig4_Contactin-2-like F 99.5 1.4E-13 3E-18 103.2 8.0 77 54-140 2-78 (85)
28 cd05892 Ig_Myotilin_C C-termin 99.5 1.5E-13 3.3E-18 99.4 7.8 68 69-140 1-68 (75)
29 cd05722 Ig1_Neogenin First imm 99.5 3.3E-13 7E-18 103.9 9.8 86 54-146 2-93 (95)
30 cd05735 Ig8_DSCAM Eight immuno 99.5 3.3E-13 7.3E-18 101.6 9.6 74 66-140 1-74 (88)
31 cd05852 Ig5_Contactin-1 Fifth 99.5 1.1E-13 2.4E-18 99.9 6.7 66 66-140 1-66 (73)
32 cd05869 Ig5_NCAM-1 Fifth immun 99.5 5.7E-13 1.2E-17 102.8 11.1 86 51-140 2-90 (97)
33 cd05870 Ig5_NCAM-2 Fifth immun 99.5 4E-13 8.7E-18 103.9 9.9 85 51-140 2-91 (98)
34 cd05773 Ig8_hNephrin_like Eigh 99.5 4.2E-13 9.1E-18 105.5 9.9 91 48-139 1-96 (109)
35 cd05749 Ig2_Tyro3_like Second 99.5 3.1E-13 6.7E-18 99.2 8.4 75 54-142 1-76 (81)
36 cd05859 Ig4_PDGFR-alpha Fourth 99.5 3.1E-13 6.6E-18 104.2 8.8 79 60-139 12-91 (101)
37 cd05745 Ig3_Peroxidasin Third 99.4 2.8E-13 6E-18 98.7 7.1 67 65-140 1-67 (74)
38 cd05740 Ig_CEACAM_D4 Fourth im 99.4 4.7E-13 1E-17 101.3 8.5 86 52-147 2-89 (91)
39 cd05893 Ig_Palladin_C C-termin 99.4 3.7E-13 7.9E-18 97.6 7.5 68 69-140 1-68 (75)
40 cd05868 Ig4_NrCAM Fourth immun 99.4 4E-13 8.7E-18 98.2 7.8 68 66-140 1-68 (76)
41 cd05898 Ig5_KIRREL3 Fifth immu 99.4 1.2E-12 2.5E-17 99.2 10.2 89 50-139 1-91 (98)
42 cd05771 IgC_Tapasin_R Tapasin- 99.4 1.7E-12 3.7E-17 107.7 12.2 116 20-135 2-130 (139)
43 cd04972 Ig_TrkABC_d4 Fourth do 99.4 8.4E-13 1.8E-17 100.4 9.1 81 54-140 3-83 (90)
44 cd05730 Ig3_NCAM-1_like Third 99.4 6E-13 1.3E-17 102.5 8.4 82 51-139 1-84 (95)
45 cd04968 Ig3_Contactin_like Thi 99.4 6.2E-13 1.4E-17 100.7 8.3 79 51-139 1-79 (88)
46 cd05724 Ig2_Robo Second immuno 99.4 1E-12 2.2E-17 99.3 9.1 80 57-144 2-82 (86)
47 cd05732 Ig5_NCAM-1_like Fifth 99.4 1.4E-12 3E-17 100.8 9.9 85 51-140 2-89 (96)
48 cd05867 Ig4_L1-CAM_like Fourth 99.4 8.9E-13 1.9E-17 96.6 8.2 67 66-140 1-68 (76)
49 cd05863 Ig2_VEGFR-3 Second imm 99.4 4.7E-13 1E-17 93.9 6.3 57 69-139 1-57 (67)
50 cd04967 Ig1_Contactin First Ig 99.4 1.8E-12 3.8E-17 98.8 10.0 82 52-141 2-87 (91)
51 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 5.9E-13 1.3E-17 96.8 7.0 66 69-141 1-66 (74)
52 cd04977 Ig1_NCAM-1_like First 99.4 1.9E-12 4.1E-17 98.5 10.0 86 54-145 3-89 (92)
53 cd05723 Ig4_Neogenin Fourth im 99.4 1.9E-12 4.1E-17 93.3 8.2 64 68-140 1-64 (71)
54 cd05744 Ig_Myotilin_C_like Imm 99.4 2.1E-12 4.5E-17 94.0 8.0 68 69-140 1-68 (75)
55 cd05891 Ig_M-protein_C C-termi 99.4 2.1E-12 4.6E-17 98.2 8.1 78 57-139 7-84 (92)
56 cd05743 Ig_Perlecan_D2_like Im 99.4 1.9E-12 4.2E-17 95.3 7.6 69 66-140 1-69 (78)
57 cd05760 Ig2_PTK7 Second immuno 99.4 2.5E-12 5.5E-17 94.3 7.7 72 69-147 1-73 (77)
58 cd05733 Ig6_L1-CAM_like Sixth 99.4 2.5E-12 5.3E-17 94.3 7.5 69 69-143 1-73 (77)
59 cd05855 Ig_TrkB_d5 Fifth domai 99.4 2.7E-12 5.9E-17 93.1 7.6 68 71-139 3-70 (79)
60 cd04973 Ig1_FGFR First immunog 99.4 2.3E-12 5E-17 95.0 7.3 71 58-139 1-71 (79)
61 cd04978 Ig4_L1-NrCAM_like Four 99.3 2.9E-12 6.3E-17 94.2 7.5 68 66-140 1-68 (76)
62 cd05748 Ig_Titin_like Immunogl 99.3 5.1E-12 1.1E-16 92.2 8.5 66 68-139 1-66 (74)
63 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 4.2E-12 9E-17 93.5 8.0 71 70-140 2-73 (81)
64 cd05857 Ig2_FGFR Second immuno 99.3 5.2E-12 1.1E-16 95.1 8.8 74 61-140 4-78 (85)
65 cd05875 Ig6_hNeurofascin_like 99.3 6E-12 1.3E-16 92.0 8.4 70 69-144 1-74 (77)
66 cd05854 Ig6_Contactin-2 Sixth 99.3 7E-12 1.5E-16 93.6 8.8 71 67-140 1-74 (85)
67 cd05746 Ig4_Peroxidasin Fourth 99.3 2.2E-12 4.8E-17 92.4 5.8 62 69-139 1-62 (69)
68 cd05864 Ig2_VEGFR-2 Second imm 99.3 3.1E-12 6.8E-17 91.0 6.0 61 69-140 1-61 (70)
69 cd04969 Ig5_Contactin_like Fif 99.3 4.7E-12 1E-16 92.0 7.1 66 66-140 1-66 (73)
70 cd05853 Ig6_Contactin-4 Sixth 99.3 6.7E-12 1.5E-16 92.5 7.8 71 67-140 1-74 (85)
71 cd05739 Ig3_RPTP_IIa_LAR_like 99.3 6.9E-12 1.5E-16 89.4 7.5 63 66-140 1-63 (69)
72 cd04976 Ig2_VEGFR Second immun 99.3 4.6E-12 1E-16 91.1 6.2 61 69-139 1-61 (71)
73 cd04974 Ig3_FGFR Third immunog 99.3 9.7E-12 2.1E-16 94.3 8.2 75 66-140 1-82 (90)
74 cd05874 Ig6_NrCAM Sixth immuno 99.3 1.1E-11 2.5E-16 90.5 8.2 70 69-144 1-74 (77)
75 cd05763 Ig_1 Subgroup of the i 99.3 9.8E-12 2.1E-16 90.9 7.7 65 69-139 1-66 (75)
76 cd05752 Ig1_FcgammaR_like Frst 99.3 1.5E-11 3.2E-16 89.8 7.4 67 52-135 1-68 (78)
77 cd05873 Ig_Sema4D_like Immunog 99.3 1.4E-11 3E-16 91.1 7.3 69 57-135 2-70 (87)
78 cd05858 Ig3_FGFR-2 Third immun 99.3 1.5E-11 3.1E-16 93.5 7.7 74 66-139 1-81 (90)
79 cd05876 Ig3_L1-CAM Third immun 99.3 8.3E-12 1.8E-16 89.9 5.7 63 69-140 1-63 (71)
80 cd07702 Ig2_VEGFR-1 Second imm 99.3 7.2E-12 1.6E-16 89.3 5.2 59 69-136 1-59 (72)
81 cd05856 Ig2_FGFRL1-like Second 99.3 2E-11 4.3E-16 91.3 7.5 71 61-139 4-74 (82)
82 KOG4258|consensus 99.3 3.9E-10 8.4E-15 112.3 18.5 139 254-396 493-651 (1025)
83 cd04979 Ig_Semaphorin_C Immuno 99.2 2.3E-11 4.9E-16 92.3 7.7 83 57-148 2-86 (89)
84 cd05756 Ig1_IL1R_like First im 99.2 1.7E-11 3.7E-16 93.2 6.9 76 59-140 7-87 (94)
85 cd05726 Ig4_Robo Fhird immunog 99.2 1.8E-11 4E-16 93.0 6.9 68 66-140 1-74 (90)
86 cd05725 Ig3_Robo Third immunog 99.2 2.1E-11 4.5E-16 87.5 6.6 62 69-140 1-62 (69)
87 cd04970 Ig6_Contactin_like Six 99.2 4.1E-11 8.9E-16 90.0 8.3 70 67-139 1-73 (85)
88 cd05764 Ig_2 Subgroup of the i 99.2 4.4E-11 9.5E-16 87.2 7.5 65 66-139 1-66 (74)
89 cd05734 Ig7_DSCAM Seventh immu 99.2 3.4E-11 7.4E-16 89.0 6.7 67 69-142 1-73 (79)
90 cd05750 Ig_Pro_neuregulin Immu 99.2 6.1E-11 1.3E-15 86.8 7.5 67 69-139 1-69 (75)
91 cd05882 Ig1_Necl-1 First (N-te 99.2 1E-10 2.2E-15 88.8 8.4 74 59-135 5-84 (95)
92 cd05736 Ig2_Follistatin_like S 99.2 6.9E-11 1.5E-15 86.7 6.7 65 69-139 1-65 (76)
93 cd05731 Ig3_L1-CAM_like Third 99.1 4.5E-11 9.8E-16 86.5 4.8 63 69-140 1-63 (71)
94 PF00041 fn3: Fibronectin type 99.1 2.8E-10 6.1E-15 85.7 9.3 84 251-341 2-85 (85)
95 cd05765 Ig_3 Subgroup of the i 99.1 1.6E-10 3.6E-15 86.0 7.5 68 66-140 1-74 (81)
96 cd05845 Ig2_L1-CAM_like Second 99.1 2.4E-10 5.1E-15 85.6 8.1 77 52-136 3-82 (95)
97 cd05895 Ig_Pro_neuregulin-1 Im 99.1 1.8E-10 3.9E-15 84.4 7.4 67 69-139 1-70 (76)
98 cd05861 Ig1_PDGFR-alphabeta Fr 99.1 3.3E-10 7.2E-15 84.4 8.8 70 66-137 1-70 (84)
99 cd07701 Ig1_Necl-3 First (N-te 99.1 4.1E-10 8.9E-15 86.0 9.4 75 58-135 4-84 (95)
100 cd07690 Ig1_CD4 First immunogl 99.1 2.6E-10 5.6E-15 86.0 7.3 79 61-140 2-92 (94)
101 cd05742 Ig1_VEGFR_like First i 99.1 2.2E-10 4.7E-15 85.8 6.7 73 66-139 1-75 (84)
102 cd05754 Ig3_Perlecan_like Thir 99.1 2.9E-10 6.3E-15 85.4 6.9 74 55-140 5-79 (85)
103 cd05753 Ig2_FcgammaR_like Seco 99.1 3.8E-10 8.2E-15 83.8 7.4 73 60-146 8-81 (83)
104 cd05727 Ig2_Contactin-2-like S 99.1 4.4E-10 9.6E-15 84.4 7.0 72 59-136 11-83 (96)
105 KOG0196|consensus 99.0 9.8E-09 2.1E-13 102.4 15.1 125 218-351 409-537 (996)
106 cd05729 Ig2_FGFR_like Second i 99.0 4.3E-09 9.4E-14 79.2 10.0 74 61-139 4-77 (85)
107 cd05757 Ig2_IL1R_like Second i 99.0 9.4E-10 2E-14 83.0 6.1 69 60-138 4-77 (92)
108 cd05717 Ig1_Necl-1-3_like Firs 98.9 7.4E-09 1.6E-13 79.5 9.0 75 58-135 4-84 (95)
109 smart00408 IGc2 Immunoglobulin 98.9 4.4E-09 9.5E-14 73.8 7.0 62 65-136 1-62 (63)
110 PF13895 Ig_2: Immunoglobulin 98.9 5.9E-09 1.3E-13 77.4 7.3 77 52-146 2-78 (80)
111 cd05871 Ig_Semaphorin_classIII 98.9 1.1E-08 2.4E-13 77.2 8.6 67 60-135 5-75 (91)
112 cd05862 Ig1_VEGFR First immuno 98.8 1.1E-08 2.4E-13 76.4 7.1 73 66-139 1-76 (86)
113 cd05897 Ig2_IL1R2_like Second 98.8 1.3E-08 2.9E-13 76.5 7.0 71 61-138 5-80 (95)
114 PF00041 fn3: Fibronectin type 98.8 5.9E-09 1.3E-13 78.4 5.1 83 356-499 2-85 (85)
115 KOG4802|consensus 98.8 7.7E-08 1.7E-12 88.2 12.4 173 257-498 154-342 (516)
116 cd05860 Ig4_SCFR Fourth immuno 98.8 6.5E-08 1.4E-12 72.7 9.4 79 60-139 12-91 (101)
117 cd05881 Ig1_Necl-2 First (N-te 98.8 8.1E-08 1.8E-12 72.4 9.8 74 59-135 5-84 (95)
118 cd05885 Ig2_Necl-4 Second immu 98.8 8E-08 1.7E-12 69.5 9.0 67 68-138 1-68 (80)
119 PF00047 ig: Immunoglobulin do 98.7 2.8E-08 6E-13 70.0 6.5 63 66-132 1-64 (64)
120 smart00409 IG Immunoglobulin. 98.7 1.9E-07 4.1E-12 70.0 10.6 74 59-138 2-76 (86)
121 smart00410 IG_like Immunoglobu 98.7 1.9E-07 4.1E-12 70.0 10.6 74 59-138 2-76 (86)
122 PF13927 Ig_3: Immunoglobulin 98.7 2.4E-08 5.1E-13 73.0 4.9 74 51-134 1-75 (75)
123 cd05872 Ig_Sema4B_like Immunog 98.7 7.4E-08 1.6E-12 70.7 7.4 66 59-135 4-69 (85)
124 cd05853 Ig6_Contactin-4 Sixth 98.7 5.3E-08 1.1E-12 71.8 5.7 36 17-52 45-85 (85)
125 cd05759 Ig2_KIRREL3-like Secon 98.6 2.1E-07 4.5E-12 69.2 8.8 63 68-135 1-68 (82)
126 cd05896 Ig1_IL1RAPL-1_like Fir 98.6 1.1E-07 2.3E-12 71.7 6.8 69 59-135 8-92 (104)
127 cd04983 IgV_TCR_alpha_like Imm 98.6 1.3E-07 2.9E-12 74.8 7.4 78 56-135 3-92 (109)
128 cd05852 Ig5_Contactin-1 Fifth 98.6 9.5E-08 2.1E-12 68.8 5.2 47 2-48 16-73 (73)
129 cd05751 Ig1_LILRB1_like First 98.5 2.3E-07 5E-12 70.3 6.6 74 51-135 2-75 (91)
130 PHA02826 IL-1 receptor-like pr 98.5 2.2E-07 4.8E-12 83.0 7.4 80 58-138 29-123 (227)
131 cd05899 IgV_TCR_beta Immunoglo 98.5 2.8E-07 6.1E-12 72.9 7.2 76 56-135 3-94 (110)
132 cd04980 IgV_L_kappa Immunoglob 98.5 7.3E-07 1.6E-11 70.0 7.7 77 54-134 3-92 (106)
133 cd05774 Ig_CEACAM_D1 First imm 98.4 6.3E-07 1.4E-11 69.2 6.9 86 56-144 3-101 (105)
134 cd05735 Ig8_DSCAM Eight immuno 98.4 4.3E-07 9.4E-12 68.3 5.9 35 19-53 47-86 (88)
135 cd05854 Ig6_Contactin-2 Sixth 98.4 4.2E-07 9.2E-12 67.8 5.5 35 18-52 46-85 (85)
136 cd05879 Ig_P0 Immunoglobulin ( 98.4 1.8E-06 4E-11 68.1 9.0 77 57-135 4-102 (116)
137 cd00063 FN3 Fibronectin type 3 98.4 6.1E-06 1.3E-10 62.6 11.4 87 251-344 3-89 (93)
138 cd05745 Ig3_Peroxidasin Third 98.4 5.6E-07 1.2E-11 65.3 5.2 47 2-48 17-74 (74)
139 cd05738 Ig2_RPTP_IIa_LAR_like 98.4 9.4E-07 2E-11 64.1 6.2 47 2-48 13-73 (74)
140 cd05893 Ig_Palladin_C C-termin 98.4 5E-07 1.1E-11 65.4 4.5 47 2-48 13-75 (75)
141 cd05741 Ig_CEACAM_D1_like Firs 98.4 1.3E-06 2.9E-11 66.6 7.2 74 66-142 1-86 (92)
142 cd05851 Ig3_Contactin-1 Third 98.3 8.9E-07 1.9E-11 66.6 5.6 48 2-49 31-88 (88)
143 cd05725 Ig3_Robo Third immunog 98.3 8.8E-07 1.9E-11 63.3 5.1 47 2-48 13-69 (69)
144 cd05892 Ig_Myotilin_C C-termin 98.3 8E-07 1.7E-11 64.2 4.8 47 2-48 13-75 (75)
145 cd05723 Ig4_Neogenin Fourth im 98.3 8.8E-07 1.9E-11 63.6 5.0 47 2-48 14-71 (71)
146 cd05867 Ig4_L1-CAM_like Fourth 98.3 1.1E-06 2.4E-11 64.2 5.5 47 2-48 16-75 (76)
147 cd00099 IgV Immunoglobulin var 98.3 2.1E-06 4.6E-11 67.3 7.3 73 62-136 2-90 (105)
148 cd04982 IgV_TCR_gamma Immunogl 98.3 3.4E-06 7.3E-11 67.5 8.3 76 57-134 4-98 (116)
149 cd05863 Ig2_VEGFR-3 Second imm 98.3 8.2E-07 1.8E-11 62.3 3.9 47 1-47 12-64 (67)
150 cd04974 Ig3_FGFR Third immunog 98.3 1.4E-06 3E-11 66.0 5.4 30 19-48 55-89 (90)
151 cd05880 Ig_EVA1 Immunoglobulin 98.3 4.5E-06 9.8E-11 66.2 8.5 78 58-135 5-101 (115)
152 cd04970 Ig6_Contactin_like Six 98.3 1.5E-06 3.3E-11 65.0 5.3 36 17-52 45-85 (85)
153 cd05726 Ig4_Robo Fhird immunog 98.3 1.8E-06 3.9E-11 65.4 5.8 50 2-51 16-84 (90)
154 cd05876 Ig3_L1-CAM Third immun 98.3 1.6E-06 3.5E-11 62.2 5.1 47 2-48 13-70 (71)
155 cd04969 Ig5_Contactin_like Fif 98.3 1.6E-06 3.5E-11 62.7 5.0 47 2-48 16-73 (73)
156 cd05762 Ig8_MLCK Eighth immuno 98.2 2.4E-06 5.2E-11 65.6 5.9 51 2-52 30-94 (98)
157 cd05734 Ig7_DSCAM Seventh immu 98.2 4.5E-06 9.7E-11 61.4 6.7 43 2-44 13-73 (79)
158 KOG3515|consensus 98.2 7.2E-05 1.6E-09 76.5 17.1 109 26-140 372-485 (741)
159 cd05883 Ig2_Necl-2 Second immu 98.2 7.9E-06 1.7E-10 59.3 7.5 66 68-136 1-67 (82)
160 cd05763 Ig_1 Subgroup of the i 98.2 3.3E-06 7.2E-11 61.4 5.6 47 2-48 13-74 (75)
161 cd05775 Ig_SLAM-CD84_like_N N- 98.2 3.2E-06 7E-11 64.8 5.7 80 64-145 2-93 (97)
162 cd05865 Ig1_NCAM-1 First immun 98.2 2.4E-06 5.3E-11 65.1 4.8 47 2-48 31-95 (96)
163 cd05746 Ig4_Peroxidasin Fourth 98.2 2.7E-06 6E-11 60.6 4.8 45 2-46 13-68 (69)
164 cd00098 IgC Immunoglobulin Con 98.2 3.4E-06 7.3E-11 64.7 5.6 70 64-136 11-85 (95)
165 cd05715 Ig_P0-like Immunoglobu 98.2 1.2E-05 2.6E-10 64.1 8.9 77 57-135 4-102 (116)
166 cd05718 Ig1_PVR_like First imm 98.2 8.1E-06 1.8E-10 63.0 7.7 69 67-138 1-88 (98)
167 cd04984 IgV_L_lambda Immunoglo 98.2 6.1E-06 1.3E-10 63.6 6.9 69 62-134 2-84 (98)
168 cd07706 IgV_TCR_delta Immunogl 98.2 7.7E-06 1.7E-10 65.4 7.6 78 55-134 3-93 (116)
169 cd05713 Ig_MOG_like Immunoglob 98.2 1.1E-05 2.4E-10 62.5 8.3 72 66-138 1-90 (100)
170 cd05864 Ig2_VEGFR-2 Second imm 98.2 3.8E-06 8.3E-11 59.7 5.1 47 1-47 12-67 (70)
171 PF07686 V-set: Immunoglobulin 98.1 1.6E-05 3.4E-10 63.3 9.1 79 55-135 5-101 (114)
172 cd05849 Ig1_Contactin-1 First 98.1 4.8E-06 1E-10 63.2 5.6 42 2-43 34-86 (93)
173 cd05761 Ig2_Necl-1-4_like Seco 98.1 1.2E-05 2.6E-10 59.5 7.4 65 68-137 1-69 (82)
174 cd04976 Ig2_VEGFR Second immun 98.1 4.7E-06 1E-10 59.7 5.1 46 2-47 13-68 (71)
175 cd05868 Ig4_NrCAM Fourth immun 98.1 5.5E-06 1.2E-10 60.3 5.3 47 2-48 16-75 (76)
176 KOG4258|consensus 98.1 2.3E-05 4.9E-10 79.3 11.2 178 214-397 573-870 (1025)
177 cd05764 Ig_2 Subgroup of the i 98.1 4.7E-06 1E-10 60.5 4.9 47 2-48 16-74 (74)
178 cd05858 Ig3_FGFR-2 Third immun 98.1 5.4E-06 1.2E-10 62.8 5.4 30 19-48 55-89 (90)
179 cd05728 Ig4_Contactin-2-like F 98.1 4.9E-06 1.1E-10 62.2 4.9 47 2-48 29-85 (85)
180 cd05765 Ig_3 Subgroup of the i 98.1 5.2E-06 1.1E-10 61.5 5.0 32 17-48 45-81 (81)
181 cd05900 Ig_Aggrecan Immunoglob 98.1 1.4E-05 3E-10 62.6 7.5 70 65-135 1-96 (112)
182 cd05756 Ig1_IL1R_like First im 98.1 4.9E-06 1.1E-10 63.2 4.8 47 2-48 34-94 (94)
183 cd05870 Ig5_NCAM-2 Fifth immun 98.1 6.2E-06 1.4E-10 63.5 5.5 47 2-48 31-98 (98)
184 cd05744 Ig_Myotilin_C_like Imm 98.1 6E-06 1.3E-10 59.9 5.1 47 2-48 13-75 (75)
185 cd05739 Ig3_RPTP_IIa_LAR_like 98.1 4.8E-06 1E-10 59.2 4.4 45 2-46 16-68 (69)
186 cd05711 Ig_FcalphaRI Immunoglo 98.1 1.3E-05 2.8E-10 61.0 6.9 75 52-134 2-76 (94)
187 cd05748 Ig_Titin_like Immunogl 98.1 6.9E-06 1.5E-10 59.5 5.2 48 1-48 13-74 (74)
188 cd05848 Ig1_Contactin-5 First 98.1 8.4E-06 1.8E-10 62.1 5.6 42 2-43 34-87 (94)
189 cd05755 Ig2_ICAM-1_like Second 98.1 2.7E-05 5.8E-10 59.1 8.2 80 53-136 3-85 (100)
190 cd05731 Ig3_L1-CAM_like Third 98.1 6E-06 1.3E-10 59.3 4.6 47 2-48 13-70 (71)
191 cd05850 Ig1_Contactin-2 First 98.1 9.4E-06 2E-10 61.9 5.8 43 2-44 34-88 (94)
192 cd05716 Ig_pIgR Immunoglobulin 98.0 1.4E-05 3.1E-10 61.6 6.8 73 61-135 2-86 (98)
193 cd04973 Ig1_FGFR First immunog 98.0 9.7E-06 2.1E-10 59.5 5.3 46 2-47 23-78 (79)
194 cd05773 Ig8_hNephrin_like Eigh 98.0 1.2E-05 2.7E-10 63.1 6.2 34 19-52 69-108 (109)
195 cd05855 Ig_TrkB_d5 Fifth domai 98.0 1.1E-05 2.4E-10 58.6 5.4 40 2-41 13-70 (79)
196 cd05866 Ig1_NCAM-2 First immun 98.0 1.1E-05 2.4E-10 60.8 5.6 42 3-44 30-85 (92)
197 cd05875 Ig6_hNeurofascin_like 98.0 1.2E-05 2.7E-10 58.5 5.7 47 1-47 12-75 (77)
198 cd05874 Ig6_NrCAM Sixth immuno 98.0 1.3E-05 2.8E-10 58.5 5.6 47 1-47 12-75 (77)
199 cd04978 Ig4_L1-NrCAM_like Four 98.0 8.8E-06 1.9E-10 59.4 4.8 47 2-48 16-75 (76)
200 cd05714 Ig_CSPGs_LP Immunoglob 98.0 9.8E-06 2.1E-10 63.5 5.3 72 65-136 1-91 (106)
201 cd05877 Ig_LP_like Immunoglobu 98.0 1.7E-05 3.8E-10 62.1 6.7 71 65-138 1-93 (106)
202 cd05724 Ig2_Robo Second immuno 98.0 1.3E-05 2.9E-10 60.1 5.7 46 2-47 27-85 (86)
203 cd04971 Ig_TrKABC_d5 Fifth dom 98.0 1.2E-05 2.5E-10 59.2 5.0 24 18-41 45-72 (81)
204 cd05887 Ig1_Nectin-3_like Firs 98.0 4.3E-05 9.3E-10 57.8 7.8 70 67-139 1-87 (96)
205 cd07700 IgV_CD8_beta Immunoglo 98.0 3.2E-05 6.9E-10 60.6 7.4 71 62-134 2-93 (107)
206 cd07705 Ig2_Necl-1 Second immu 98.0 3.2E-05 7E-10 57.2 7.0 63 69-136 2-69 (83)
207 cd05733 Ig6_L1-CAM_like Sixth 97.9 1.9E-05 4.2E-10 57.6 5.5 46 1-46 12-74 (77)
208 cd05888 Ig1_Nectin-4_like Frst 97.9 6.1E-05 1.3E-09 58.1 8.3 70 67-138 1-90 (100)
209 cd04981 IgV_H Immunoglobulin ( 97.9 4.8E-05 1E-09 60.6 7.9 76 57-134 3-97 (117)
210 cd04977 Ig1_NCAM-1_like First 97.9 3.6E-05 7.9E-10 58.4 6.7 46 2-47 29-91 (92)
211 cd07698 IgC_MHC_I_alpha3 Class 97.9 0.00011 2.4E-09 55.8 9.3 78 51-135 2-82 (93)
212 cd05760 Ig2_PTK7 Second immuno 97.9 2.8E-05 6.1E-10 56.7 5.8 47 2-48 13-72 (77)
213 KOG3515|consensus 97.9 0.00027 5.9E-09 72.4 14.7 244 26-294 469-734 (741)
214 cd05884 Ig2_Necl-3 Second immu 97.9 3.9E-05 8.4E-10 56.6 6.4 63 69-135 2-68 (83)
215 cd05712 Ig_Siglec_N Immunoglob 97.9 7.5E-05 1.6E-09 59.8 8.3 76 57-134 5-101 (119)
216 cd05740 Ig_CEACAM_D4 Fourth im 97.9 2.2E-05 4.7E-10 59.3 4.9 47 2-48 32-90 (91)
217 cd04975 Ig4_SCFR_like Fourth i 97.9 2.6E-05 5.7E-10 60.0 5.1 31 19-49 65-100 (101)
218 cd05846 Ig1_MRC-OX-2_like Firs 97.9 6.7E-05 1.5E-09 57.6 7.4 70 66-138 1-87 (97)
219 cd05770 IgC_beta2m Class I maj 97.8 0.0002 4.3E-09 53.9 9.5 68 64-135 13-82 (93)
220 smart00060 FN3 Fibronectin typ 97.8 0.00027 5.9E-09 51.7 10.4 80 251-337 3-82 (83)
221 PHA03376 BARF1; Provisional 97.8 0.00025 5.4E-09 58.8 10.6 77 60-136 20-110 (221)
222 cd05736 Ig2_Follistatin_like S 97.8 6.1E-05 1.3E-09 54.9 6.4 48 2-49 13-74 (76)
223 cd05767 IgC_MHC_II_alpha Class 97.8 0.00037 8.1E-09 52.6 10.5 69 64-135 13-83 (94)
224 cd05847 IgC_CH2_IgE CH2 domain 97.8 7.1E-05 1.5E-09 56.6 6.5 79 57-138 5-88 (94)
225 cd05878 Ig_Aggrecan_like Immun 97.8 7.4E-05 1.6E-09 58.7 6.8 70 65-135 1-94 (110)
226 cd05730 Ig3_NCAM-1_like Third 97.8 4.6E-05 1E-09 58.3 5.5 48 2-49 33-93 (95)
227 cd05732 Ig5_NCAM-1_like Fifth 97.8 4.5E-05 9.8E-10 58.6 5.5 30 19-48 62-96 (96)
228 cd05859 Ig4_PDGFR-alpha Fourth 97.8 4.2E-05 9.1E-10 59.0 5.2 31 19-49 65-100 (101)
229 cd04967 Ig1_Contactin First Ig 97.8 3.8E-05 8.3E-10 58.2 4.8 41 2-42 34-86 (91)
230 cd05886 Ig1_Nectin-1_like Firs 97.8 0.00017 3.6E-09 55.1 8.1 69 67-138 1-89 (99)
231 cd05895 Ig_Pro_neuregulin-1 Im 97.8 3.2E-05 7E-10 56.3 3.9 23 19-41 44-70 (76)
232 cd05891 Ig_M-protein_C C-termi 97.8 4.9E-05 1.1E-09 57.7 5.1 47 2-48 31-92 (92)
233 cd05857 Ig2_FGFR Second immuno 97.7 3.3E-05 7.2E-10 57.7 4.1 47 2-48 24-85 (85)
234 cd05757 Ig2_IL1R_like Second i 97.7 6.7E-05 1.4E-09 56.6 5.6 40 2-41 30-78 (92)
235 cd05743 Ig_Perlecan_D2_like Im 97.7 5.8E-05 1.3E-09 55.3 5.2 40 2-41 16-68 (78)
236 cd00096 Ig Immunoglobulin doma 97.7 0.0001 2.2E-09 52.4 6.6 66 69-136 1-66 (74)
237 PHA02987 Ig domain OX-2-like p 97.7 0.00013 2.8E-09 61.0 7.5 73 59-134 23-106 (189)
238 KOG4802|consensus 97.7 0.0004 8.6E-09 64.5 11.3 118 210-339 217-341 (516)
239 cd05737 Ig_Myomesin_like_C C-t 97.7 3.2E-05 6.9E-10 58.8 3.6 34 508-541 4-37 (92)
240 cd05720 Ig_CD8_alpha Immunoglo 97.7 7.7E-05 1.7E-09 58.0 5.8 69 62-134 2-90 (104)
241 cd05871 Ig_Semaphorin_classIII 97.7 6.6E-05 1.4E-09 56.6 5.2 48 2-49 25-89 (91)
242 cd07699 IgC_L Immunoglobulin C 97.7 7.7E-05 1.7E-09 57.4 5.6 82 51-135 1-88 (100)
243 cd05747 Ig5_Titin_like M5, fif 97.7 3.5E-05 7.5E-10 58.6 3.7 38 504-541 2-39 (92)
244 smart00407 IGc1 Immunoglobulin 97.7 0.00012 2.7E-09 52.9 6.4 65 68-135 1-70 (75)
245 cd00063 FN3 Fibronectin type 3 97.7 0.00039 8.5E-09 52.4 9.6 32 455-500 55-87 (93)
246 PF08205 C2-set_2: CD80-like C 97.7 0.00014 3.1E-09 54.8 6.9 80 52-136 1-84 (89)
247 cd04968 Ig3_Contactin_like Thi 97.7 4.3E-05 9.4E-10 57.5 3.8 37 506-542 2-38 (88)
248 cd05768 IgC_CH4 CH4 domain (fo 97.7 0.00021 4.6E-09 55.0 7.4 79 57-135 7-90 (102)
249 cd07693 Ig1_Robo First immunog 97.6 6.1E-05 1.3E-09 58.3 4.2 36 506-541 2-37 (100)
250 cd05742 Ig1_VEGFR_like First i 97.6 5.1E-05 1.1E-09 56.5 3.6 31 18-48 48-83 (84)
251 cd05772 IgC_SIRP Signal-regula 97.6 0.00037 7.9E-09 54.5 8.3 70 60-135 15-91 (111)
252 cd05894 Ig_C5_MyBP-C C5 immuno 97.6 5.4E-05 1.2E-09 56.5 3.5 29 513-541 3-31 (86)
253 cd05902 Ig_Neurocan Immunoglob 97.6 0.0002 4.3E-09 55.9 6.7 69 66-135 2-94 (110)
254 cd05766 IgC_MHC_II_beta Class 97.6 0.00076 1.7E-08 51.1 9.6 69 64-135 12-82 (94)
255 cd05862 Ig1_VEGFR First immuno 97.6 0.00011 2.4E-09 54.8 4.8 32 18-49 49-85 (86)
256 cd07702 Ig2_VEGFR-1 Second imm 97.6 0.00018 4E-09 51.2 5.6 39 2-40 13-61 (72)
257 cd05869 Ig5_NCAM-1 Fifth immun 97.6 8.3E-05 1.8E-09 57.1 4.2 38 504-541 1-38 (97)
258 cd05889 Ig1_DNAM-1_like First 97.6 0.00027 5.9E-09 53.5 6.7 69 67-138 1-86 (96)
259 cd05856 Ig2_FGFRL1-like Second 97.6 9.5E-05 2.1E-09 54.8 4.2 46 2-47 24-81 (82)
260 cd05749 Ig2_Tyro3_like Second 97.6 6.5E-05 1.4E-09 55.1 3.2 30 512-541 5-35 (81)
261 cd05754 Ig3_Perlecan_like Thir 97.5 0.0001 2.3E-09 55.0 4.1 45 2-46 32-84 (85)
262 cd05901 Ig_Versican Immunoglob 97.5 0.00046 1E-08 54.0 7.7 69 66-135 2-101 (117)
263 cd05750 Ig_Pro_neuregulin Immu 97.5 9.6E-05 2.1E-09 53.6 3.7 24 18-41 42-69 (75)
264 cd07694 Ig2_CD4 Second immunog 97.5 0.00036 7.8E-09 50.6 6.3 63 60-134 8-72 (88)
265 cd05727 Ig2_Contactin-2-like S 97.5 0.00017 3.7E-09 54.3 4.9 40 2-41 34-86 (96)
266 cd05882 Ig1_Necl-1 First (N-te 97.5 0.00019 4.2E-09 54.5 4.9 31 18-48 61-95 (95)
267 PHA03376 BARF1; Provisional 97.4 0.0025 5.4E-08 53.1 11.0 70 20-89 88-162 (221)
268 cd04972 Ig_TrkABC_d4 Fourth do 97.4 0.00014 2.9E-09 55.0 3.0 30 512-541 7-36 (90)
269 PF07654 C1-set: Immunoglobuli 97.4 0.0022 4.8E-08 47.4 9.3 68 65-135 7-76 (83)
270 smart00406 IGv Immunoglobulin 97.4 0.0005 1.1E-08 50.6 5.8 62 68-131 1-80 (81)
271 cd04979 Ig_Semaphorin_C Immuno 97.4 0.00045 9.6E-09 52.1 5.5 47 2-48 25-86 (89)
272 cd07697 IgC_TCR_gamma T cell r 97.3 0.00053 1.2E-08 51.9 5.8 36 58-93 8-45 (96)
273 cd07696 IgC_CH3 CH3 domain (th 97.3 0.00066 1.4E-08 51.6 5.9 76 56-135 4-85 (96)
274 cd05873 Ig_Sema4D_like Immunog 97.3 0.00044 9.6E-09 51.2 4.8 37 2-38 25-71 (87)
275 cd05861 Ig1_PDGFR-alphabeta Fr 97.3 0.00045 9.8E-09 51.3 4.8 31 18-48 45-82 (84)
276 cd07701 Ig1_Necl-3 First (N-te 97.3 0.00047 1E-08 52.5 5.0 30 19-48 62-95 (95)
277 cd05753 Ig2_FcgammaR_like Seco 97.3 0.00044 9.5E-09 51.2 4.5 44 2-45 30-78 (83)
278 cd07692 Ig_CD3_epsilon Immunog 97.2 0.00059 1.3E-08 46.3 4.2 52 64-135 5-56 (65)
279 cd05769 IgC_TCR_beta T cell re 97.2 0.00087 1.9E-08 52.6 5.8 84 51-136 2-92 (115)
280 PF07679 I-set: Immunoglobulin 97.2 0.00055 1.2E-08 51.7 4.6 35 507-541 2-36 (90)
281 TIGR00864 PCC polycystin catio 97.2 0.88 1.9E-05 54.3 33.0 64 26-89 1482-1549(2740)
282 cd05717 Ig1_Necl-1-3_like Firs 97.2 0.00074 1.6E-08 51.6 5.1 31 18-48 61-95 (95)
283 smart00060 FN3 Fibronectin typ 97.2 0.0027 5.8E-08 46.2 8.1 19 457-475 57-76 (83)
284 cd05752 Ig1_FcgammaR_like Frst 97.2 0.0008 1.7E-08 49.0 4.9 44 3-48 32-78 (78)
285 cd05897 Ig2_IL1R2_like Second 97.0 0.0011 2.4E-08 50.0 4.6 40 2-41 30-81 (95)
286 cd05722 Ig1_Neogenin First imm 96.9 0.00088 1.9E-08 51.2 3.3 30 512-541 6-35 (95)
287 cd05845 Ig2_L1-CAM_like Second 96.9 0.0016 3.4E-08 49.1 4.5 37 2-38 34-82 (95)
288 cd04985 IgC_CH1 CH1 domain (fi 96.9 0.0069 1.5E-07 45.9 7.8 67 65-135 15-86 (95)
289 cd05896 Ig1_IL1RAPL-1_like Fir 96.8 0.0024 5.1E-08 48.5 4.8 36 3-38 42-93 (104)
290 KOG3632|consensus 96.7 0.0072 1.5E-07 62.7 9.1 143 218-379 643-795 (1335)
291 smart00408 IGc2 Immunoglobulin 96.7 0.0035 7.6E-08 43.1 4.8 38 2-39 17-63 (63)
292 KOG4152|consensus 96.6 0.0078 1.7E-07 58.0 8.1 75 316-393 651-726 (830)
293 cd05774 Ig_CEACAM_D1 First imm 96.6 0.0025 5.4E-08 49.3 4.0 28 13-40 64-95 (105)
294 cd05719 Ig2_PVR_like Second im 96.6 0.0098 2.1E-07 45.1 7.1 64 65-135 14-81 (95)
295 cd05721 IgV_CTLA-4 Immunoglobu 96.6 0.017 3.6E-07 44.8 8.0 76 57-134 4-95 (115)
296 cd04986 IgC_CH2 CH2 domain (se 96.6 0.0094 2E-07 45.2 6.6 75 55-135 8-88 (99)
297 cd05758 Ig5_KIRREL3-like Fifth 96.5 0.0031 6.6E-08 48.5 4.0 30 512-541 8-38 (98)
298 PF09294 Interfer-bind: Interf 96.5 0.014 2.9E-07 45.6 7.5 89 250-347 4-104 (106)
299 PF10179 DUF2369: Uncharacteri 96.5 0.7 1.5E-05 42.8 20.9 81 310-396 126-213 (300)
300 KOG4367|consensus 96.5 0.0047 1E-07 57.8 5.2 82 260-350 450-531 (699)
301 cd05771 IgC_Tapasin_R Tapasin- 96.4 0.006 1.3E-07 50.4 5.4 69 460-542 4-77 (139)
302 cd07703 Ig2_Nectin-2_like Seco 96.3 0.025 5.3E-07 42.8 7.6 63 66-135 15-81 (95)
303 KOG1480|consensus 96.3 0.00067 1.4E-08 68.3 -1.2 100 30-138 105-208 (909)
304 cd05886 Ig1_Nectin-1_like Firs 96.3 0.0081 1.7E-07 45.9 4.7 31 18-48 62-98 (99)
305 PF01108 Tissue_fac: Tissue fa 96.2 0.077 1.7E-06 41.3 10.2 81 249-337 22-104 (107)
306 PF13927 Ig_3: Immunoglobulin 96.1 0.0051 1.1E-07 44.2 3.1 34 3-36 32-75 (75)
307 KOG0613|consensus 96.1 0.24 5.2E-06 54.0 16.2 171 310-541 289-472 (1205)
308 cd07689 Ig2_VCAM-1 Second immu 96.0 0.031 6.8E-07 41.9 6.5 69 63-135 12-85 (99)
309 cd05888 Ig1_Nectin-4_like Frst 95.9 0.011 2.5E-07 45.4 4.0 31 18-48 63-99 (100)
310 cd05887 Ig1_Nectin-3_like Firs 95.8 0.018 3.8E-07 43.7 4.7 31 18-48 59-95 (96)
311 cd05729 Ig2_FGFR_like Second i 95.8 0.0089 1.9E-07 44.3 3.1 28 514-541 3-30 (85)
312 smart00409 IG Immunoglobulin. 95.8 0.024 5.1E-07 41.7 5.5 30 19-48 51-85 (86)
313 smart00410 IG_like Immunoglobu 95.8 0.024 5.1E-07 41.7 5.5 30 19-48 51-85 (86)
314 COG3401 Fibronectin type 3 dom 95.8 0.49 1.1E-05 43.8 14.3 118 260-396 81-201 (343)
315 KOG0613|consensus 95.7 0.47 1E-05 51.9 16.4 215 68-343 207-424 (1205)
316 cd05741 Ig_CEACAM_D1_like Firs 95.7 0.016 3.4E-07 43.8 4.1 28 16-43 54-85 (92)
317 cd07690 Ig1_CD4 First immunogl 95.6 0.014 3E-07 44.1 3.4 21 20-40 66-90 (94)
318 TIGR00864 PCC polycystin catio 95.6 8 0.00017 46.9 35.6 62 26-87 1566-1644(2740)
319 PHA03269 envelope glycoprotein 95.6 0.23 5E-06 48.0 12.0 72 20-93 290-372 (566)
320 cd05900 Ig_Aggrecan Immunoglob 95.5 0.037 8E-07 43.4 5.6 32 18-49 73-109 (112)
321 PF00047 ig: Immunoglobulin do 95.5 0.03 6.6E-07 38.7 4.6 14 21-34 47-64 (64)
322 PHA03271 envelope glycoprotein 95.4 0.27 5.9E-06 46.6 11.8 75 20-96 208-293 (490)
323 PHA02633 hypothetical protein; 95.3 0.017 3.6E-07 38.6 2.4 23 113-135 18-40 (63)
324 cd05714 Ig_CSPGs_LP Immunoglob 95.2 0.02 4.3E-07 44.7 3.4 33 18-50 67-104 (106)
325 cd07704 Ig2_Nectin-3-4_like Se 95.2 0.14 3.1E-06 38.6 7.6 67 60-135 10-83 (97)
326 cd05877 Ig_LP_like Immunoglobu 95.2 0.031 6.7E-07 43.6 4.3 31 19-49 68-103 (106)
327 cd05713 Ig_MOG_like Immunoglob 95.1 0.021 4.5E-07 44.0 3.0 22 19-40 65-90 (100)
328 cd05879 Ig_P0 Immunoglobulin ( 95.0 0.028 6E-07 44.4 3.6 25 17-41 78-106 (116)
329 cd05775 Ig_SLAM-CD84_like_N N- 94.9 0.038 8.2E-07 42.2 4.0 27 18-44 60-90 (97)
330 cd05885 Ig2_Necl-4 Second immu 94.8 0.082 1.8E-06 38.4 5.3 40 2-41 15-69 (80)
331 cd07691 Ig_CD3_gamma_delta Imm 94.8 0.059 1.3E-06 37.1 4.2 50 65-134 5-54 (69)
332 cd05878 Ig_Aggrecan_like Immun 94.7 0.075 1.6E-06 41.6 5.3 31 19-49 72-107 (110)
333 PHA03270 envelope glycoprotein 94.6 0.47 1E-05 45.3 10.9 73 20-94 183-265 (466)
334 KOG4597|consensus 94.5 0.032 7E-07 53.4 3.3 80 55-138 200-282 (560)
335 cd05718 Ig1_PVR_like First imm 94.5 0.045 9.7E-07 41.9 3.6 31 18-48 61-97 (98)
336 PHA03273 envelope glycoprotein 94.4 0.64 1.4E-05 44.9 11.4 72 20-93 199-280 (486)
337 KOG4367|consensus 94.3 0.031 6.8E-07 52.5 2.6 75 408-504 452-527 (699)
338 PF07354 Sp38: Zona-pellucida- 94.1 0.076 1.7E-06 47.2 4.5 47 80-135 12-59 (271)
339 PF09067 EpoR_lig-bind: Erythr 94.1 0.68 1.5E-05 35.6 9.1 84 248-337 7-95 (104)
340 PF13895 Ig_2: Immunoglobulin 94.0 0.084 1.8E-06 38.3 4.0 27 515-541 9-35 (80)
341 cd05889 Ig1_DNAM-1_like First 93.9 0.1 2.2E-06 39.6 4.4 31 18-48 59-93 (96)
342 KOG4228|consensus 93.8 0.36 7.7E-06 52.0 9.4 223 222-475 2-235 (1087)
343 cd05880 Ig_EVA1 Immunoglobulin 93.7 0.083 1.8E-06 41.8 3.7 24 18-41 78-105 (115)
344 PHA02982 hypothetical protein; 93.6 0.12 2.6E-06 43.9 4.6 79 60-138 33-125 (251)
345 cd05901 Ig_Versican Immunoglob 93.5 0.18 3.9E-06 39.6 5.2 32 18-49 78-114 (117)
346 cd05759 Ig2_KIRREL3-like Secon 93.3 0.16 3.6E-06 37.2 4.6 22 20-41 47-72 (82)
347 PF10179 DUF2369: Uncharacteri 93.3 3.1 6.8E-05 38.7 13.5 128 210-348 136-296 (300)
348 KOG4152|consensus 93.0 0.68 1.5E-05 45.2 9.1 71 216-288 656-726 (830)
349 PHA03042 CD47-like protein; Pr 92.9 0.22 4.8E-06 44.5 5.3 59 64-135 29-92 (286)
350 PF11465 Receptor_2B4: Natural 92.9 0.075 1.6E-06 40.1 2.1 60 82-147 45-105 (108)
351 PHA02633 hypothetical protein; 92.8 0.12 2.7E-06 34.6 2.8 32 18-49 17-53 (63)
352 cd05898 Ig5_KIRREL3 Fifth immu 92.6 0.2 4.4E-06 38.1 4.2 32 510-541 6-38 (98)
353 cd05881 Ig1_Necl-2 First (N-te 92.4 0.12 2.6E-06 39.0 2.8 18 20-37 63-84 (95)
354 PF06328 Lep_receptor_Ig: Ig-l 92.4 1.1 2.3E-05 33.4 7.7 69 56-132 8-81 (89)
355 cd05846 Ig1_MRC-OX-2_like Firs 92.3 0.18 4E-06 38.4 3.8 31 18-48 60-96 (97)
356 cd05872 Ig_Sema4B_like Immunog 92.2 0.24 5.3E-06 36.5 4.1 29 12-41 40-72 (85)
357 PF08204 V-set_CD47: CD47 immu 92.2 0.071 1.5E-06 42.4 1.3 70 62-135 23-107 (130)
358 cd05715 Ig_P0-like Immunoglobu 92.1 0.27 5.8E-06 39.0 4.6 23 19-41 80-106 (116)
359 cd05902 Ig_Neurocan Immunoglob 91.5 0.19 4.1E-06 39.2 3.0 31 19-49 72-107 (110)
360 cd05751 Ig1_LILRB1_like First 91.4 0.55 1.2E-05 35.2 5.4 21 18-38 52-76 (91)
361 PHA02865 MHC-like TNF binding 91.3 1 2.3E-05 42.3 8.0 21 68-88 216-238 (338)
362 PF07495 Y_Y_Y: Y_Y_Y domain; 91.2 0.28 6.2E-06 34.1 3.4 26 458-497 30-55 (66)
363 PF09240 IL6Ra-bind: Interleuk 90.9 5.8 0.00013 30.2 11.6 82 252-338 2-87 (99)
364 cd05860 Ig4_SCFR Fourth immuno 90.7 0.27 6E-06 37.3 3.0 32 511-542 9-41 (101)
365 COG4733 Phage-related protein, 90.3 4.7 0.0001 42.4 12.1 28 310-338 658-685 (952)
366 cd07698 IgC_MHC_I_alpha3 Class 89.8 0.37 7.9E-06 36.4 3.2 22 520-541 14-37 (93)
367 PLN02533 probable purple acid 89.7 7.6 0.00016 38.8 13.2 90 248-350 40-135 (427)
368 PF01108 Tissue_fac: Tissue fa 89.6 1 2.2E-05 35.0 5.7 22 355-377 23-44 (107)
369 cd05755 Ig2_ICAM-1_like Second 89.6 0.3 6.5E-06 37.2 2.5 25 517-541 13-40 (100)
370 cd07691 Ig_CD3_gamma_delta Imm 89.2 0.71 1.5E-05 31.9 3.8 43 2-48 17-63 (69)
371 PF07354 Sp38: Zona-pellucida- 89.0 0.57 1.2E-05 41.8 4.1 36 2-37 13-59 (271)
372 PHA03052 Hypothetical protein; 88.8 1.9 4.1E-05 29.5 5.5 45 58-102 4-54 (69)
373 cd04980 IgV_L_kappa Immunoglob 88.6 0.53 1.1E-05 36.5 3.4 31 512-542 7-38 (106)
374 cd04983 IgV_TCR_alpha_like Imm 88.5 0.41 9E-06 37.3 2.8 21 19-39 70-94 (109)
375 cd00099 IgV Immunoglobulin var 88.4 0.4 8.7E-06 37.0 2.6 20 20-39 68-91 (105)
376 COG3401 Fibronectin type 3 dom 88.0 17 0.00038 34.0 13.0 116 218-347 135-251 (343)
377 PF08205 C2-set_2: CD80-like C 87.8 0.57 1.2E-05 34.9 3.1 22 520-541 14-36 (89)
378 cd00098 IgC Immunoglobulin Con 86.9 0.48 1E-05 35.8 2.2 24 518-541 11-36 (95)
379 PHA02987 Ig domain OX-2-like p 85.8 1.7 3.8E-05 36.9 5.0 37 17-53 83-126 (189)
380 PF06832 BiPBP_C: Penicillin-B 85.0 12 0.00026 27.7 9.0 53 68-138 31-83 (89)
381 cd00096 Ig Immunoglobulin doma 84.9 1.6 3.4E-05 29.8 4.0 22 17-38 41-66 (74)
382 cd04984 IgV_L_lambda Immunoglo 84.4 1.2 2.6E-05 33.9 3.3 18 20-37 64-85 (98)
383 cd05716 Ig_pIgR Immunoglobulin 83.2 1.3 2.8E-05 33.7 3.1 19 20-38 65-87 (98)
384 cd05899 IgV_TCR_beta Immunoglo 82.2 1.3 2.9E-05 34.5 2.8 20 19-38 72-95 (110)
385 PF07495 Y_Y_Y: Y_Y_Y domain; 81.8 5.9 0.00013 27.3 5.8 25 313-338 30-54 (66)
386 cd05712 Ig_Siglec_N Immunoglob 80.6 2.1 4.5E-05 34.0 3.5 19 19-37 80-102 (119)
387 cd07692 Ig_CD3_epsilon Immunog 80.5 2.7 5.9E-05 28.8 3.4 35 2-37 19-56 (65)
388 PHA02914 Immunoglobulin-like d 80.3 8 0.00017 36.9 7.5 77 59-135 272-368 (500)
389 cd05761 Ig2_Necl-1-4_like Seco 80.2 3.7 8E-05 30.0 4.5 16 26-41 56-71 (82)
390 PF09294 Interfer-bind: Interf 79.7 2.3 4.9E-05 32.9 3.4 42 428-475 44-86 (106)
391 cd07703 Ig2_Nectin-2_like Seco 79.1 1.9 4.2E-05 32.5 2.7 27 515-541 10-37 (95)
392 smart00406 IGv Immunoglobulin 78.6 1.2 2.6E-05 32.1 1.5 15 19-33 62-80 (81)
393 KOG4806|consensus 78.3 34 0.00075 32.2 10.7 28 308-335 166-193 (454)
394 cd07700 IgV_CD8_beta Immunoglo 77.6 2.4 5.2E-05 32.9 2.9 18 20-37 73-94 (107)
395 PF07686 V-set: Immunoglobulin 76.4 4.9 0.00011 31.1 4.6 31 511-541 7-38 (114)
396 cd04982 IgV_TCR_gamma Immunogl 74.8 2.5 5.5E-05 33.3 2.4 18 19-36 77-98 (116)
397 cd05766 IgC_MHC_II_beta Class 74.8 2.6 5.7E-05 31.8 2.4 23 519-541 13-37 (94)
398 cd05768 IgC_CH4 CH4 domain (fo 73.4 2.8 6E-05 32.2 2.2 23 519-541 15-39 (102)
399 cd05720 Ig_CD8_alpha Immunoglo 73.2 2.6 5.6E-05 32.5 2.1 17 20-36 70-90 (104)
400 cd05719 Ig2_PVR_like Second im 72.8 3 6.5E-05 31.5 2.3 24 518-541 13-37 (95)
401 cd07706 IgV_TCR_delta Immunogl 71.5 3.2 6.9E-05 32.7 2.3 18 20-37 73-94 (116)
402 cd07704 Ig2_Nectin-3-4_like Se 71.3 4.7 0.0001 30.5 3.0 30 512-541 8-39 (97)
403 cd05772 IgC_SIRP Signal-regula 70.7 4 8.7E-05 31.9 2.6 25 517-541 18-44 (111)
404 PF07654 C1-set: Immunoglobuli 69.7 3.6 7.9E-05 30.0 2.1 22 520-541 8-31 (83)
405 TIGR03000 plancto_dom_1 Planct 69.5 15 0.00032 26.1 4.8 48 454-526 24-74 (75)
406 KOG3632|consensus 68.9 4.4 9.5E-05 43.3 3.1 115 251-377 580-695 (1335)
407 cd07699 IgC_L Immunoglobulin C 67.9 4.2 9E-05 31.1 2.2 23 519-541 16-40 (100)
408 cd04981 IgV_H Immunoglobulin ( 67.6 5.5 0.00012 31.5 2.9 17 20-36 77-97 (117)
409 PF05790 C2-set: Immunoglobuli 67.3 22 0.00047 25.8 5.6 49 69-133 8-63 (80)
410 PF11465 Receptor_2B4: Natural 66.9 7.7 0.00017 29.6 3.2 32 17-48 69-104 (108)
411 PHA03112 IL-18 binding protein 65.7 28 0.0006 28.2 6.3 76 64-139 36-122 (141)
412 cd05769 IgC_TCR_beta T cell re 64.7 5.2 0.00011 31.5 2.1 24 518-541 16-41 (115)
413 cd07696 IgC_CH3 CH3 domain (th 64.6 6.5 0.00014 29.8 2.6 23 519-541 13-38 (96)
414 KOG1948|consensus 62.8 76 0.0017 34.1 10.3 22 454-475 943-965 (1165)
415 cd05883 Ig2_Necl-2 Second immu 62.5 25 0.00054 25.7 5.2 29 20-48 45-79 (82)
416 cd07689 Ig2_VCAM-1 Second immu 60.5 7.3 0.00016 29.5 2.1 24 518-541 13-39 (99)
417 cd05767 IgC_MHC_II_alpha Class 59.0 12 0.00027 28.1 3.2 23 519-541 14-38 (94)
418 cd05770 IgC_beta2m Class I maj 58.4 8.3 0.00018 29.0 2.2 23 519-541 14-38 (93)
419 PF02440 Adeno_E3_CR1: Adenovi 58.2 11 0.00023 25.8 2.4 22 517-542 2-23 (63)
420 KOG4806|consensus 57.7 1.8E+02 0.0038 27.8 10.9 124 218-348 295-446 (454)
421 cd07694 Ig2_CD4 Second immunog 56.9 11 0.00024 27.7 2.5 25 516-540 10-36 (88)
422 cd05847 IgC_CH2_IgE CH2 domain 56.7 9.7 0.00021 28.7 2.3 22 520-541 14-37 (94)
423 cd04985 IgC_CH1 CH1 domain (fi 55.9 9.7 0.00021 28.7 2.2 22 520-541 16-39 (95)
424 cd07697 IgC_TCR_gamma T cell r 54.9 10 0.00022 28.7 2.1 22 520-541 16-39 (96)
425 cd05890 Ig2_Nectin-1_like Seco 54.9 60 0.0013 24.4 5.9 60 69-135 23-86 (98)
426 PHA03240 envelope glycoprotein 53.2 34 0.00074 29.6 5.1 18 112-129 104-121 (258)
427 KOG1225|consensus 52.8 86 0.0019 32.1 8.8 110 251-377 368-478 (525)
428 PF11344 DUF3146: Protein of u 52.6 9.6 0.00021 26.7 1.5 13 463-475 66-79 (80)
429 COG5475 Uncharacterized small 51.1 50 0.0011 21.7 4.4 24 20-43 19-44 (60)
430 PLN02533 probable purple acid 50.3 1.1E+02 0.0023 30.8 9.2 24 354-377 41-64 (427)
431 PHA03042 CD47-like protein; Pr 48.9 26 0.00055 31.9 4.0 32 8-39 56-94 (286)
432 PF10342 GPI-anchored: Ser-Thr 46.1 1.2E+02 0.0026 22.4 9.4 64 263-331 13-78 (93)
433 PF05790 C2-set: Immunoglobuli 45.5 50 0.0011 23.9 4.4 10 26-35 54-63 (80)
434 cd02848 Chitinase_N_term Chiti 45.2 1.3E+02 0.0029 23.1 6.7 24 463-486 75-99 (106)
435 KOG1378|consensus 44.5 2.8E+02 0.006 27.8 10.5 88 251-350 44-142 (452)
436 KOG0200|consensus 44.4 59 0.0013 34.4 6.7 112 16-134 10-138 (609)
437 COG4733 Phage-related protein, 44.0 4.6E+02 0.01 28.6 19.9 118 208-339 665-784 (952)
438 cd05711 Ig_FcalphaRI Immunoglo 42.8 29 0.00063 26.0 3.1 28 513-541 8-35 (94)
439 PF14292 SusE: SusE outer memb 42.2 1.1E+02 0.0025 24.2 6.6 30 409-440 45-75 (122)
440 PHA02914 Immunoglobulin-like d 40.7 3.6E+02 0.0078 26.4 11.4 117 16-138 343-469 (500)
441 PF10342 GPI-anchored: Ser-Thr 39.5 1.5E+02 0.0033 21.7 6.8 60 409-475 13-78 (93)
442 PF09423 PhoD: PhoD-like phosp 38.6 1.7E+02 0.0036 29.7 8.7 53 308-366 60-112 (453)
443 cd00146 PKD polycystic kidney 37.3 1.2E+02 0.0025 21.7 5.5 17 459-475 49-65 (81)
444 KOG1480|consensus 35.7 22 0.00047 37.4 1.7 33 9-41 173-209 (909)
445 PF11141 DUF2914: Protein of u 35.5 1.5E+02 0.0033 20.5 5.8 51 81-139 7-57 (66)
446 PHA03286 envelope glycoprotein 34.7 2.1E+02 0.0044 28.5 7.8 69 19-87 127-225 (492)
447 PF02124 Marek_A: Marek's dise 34.7 3.3E+02 0.0071 24.1 8.9 65 20-92 40-117 (211)
448 PHA03189 UL14 tegument protein 31.6 2.8E+02 0.0061 25.9 7.7 21 114-135 135-155 (348)
449 PHA03282 envelope glycoprotein 30.5 86 0.0019 31.1 4.6 27 11-37 116-146 (540)
450 KOG4597|consensus 28.1 37 0.00079 33.5 1.8 37 506-542 197-233 (560)
451 PF02480 Herpes_gE: Alphaherpe 28.1 51 0.0011 33.1 2.9 72 16-87 86-189 (439)
452 KOG3834|consensus 27.4 1.4E+02 0.0029 29.4 5.3 71 254-329 67-137 (462)
453 PF14250 AbrB-like: AbrB-like 27.3 62 0.0014 22.5 2.3 38 424-474 25-64 (71)
454 PHA03283 envelope glycoprotein 26.4 4.3E+02 0.0094 26.9 8.6 70 19-88 134-234 (542)
455 KOG4228|consensus 25.6 87 0.0019 34.8 4.1 110 224-349 144-253 (1087)
456 PF14459 Prok-E2_C: Prokaryoti 24.9 55 0.0012 24.9 1.8 24 518-542 61-84 (131)
457 PF02480 Herpes_gE: Alphaherpe 23.7 69 0.0015 32.1 2.9 21 114-134 270-290 (439)
458 COG3908 Uncharacterized protei 23.7 1.4E+02 0.0031 20.5 3.4 28 506-535 13-41 (77)
459 PHA02579 7 baseplate wedge sub 23.1 3.4E+02 0.0073 29.1 7.4 72 251-332 7-85 (1030)
460 KOG3834|consensus 20.9 7.3E+02 0.016 24.7 8.7 59 408-473 75-137 (462)
461 PF13754 Big_3_4: Bacterial Ig 20.9 2.5E+02 0.0055 18.3 6.9 30 311-341 13-42 (54)
462 PHA03282 envelope glycoprotein 20.8 68 0.0015 31.7 2.1 21 114-134 334-354 (540)
463 PF08329 ChitinaseA_N: Chitina 20.2 37 0.00081 27.4 0.2 28 463-490 78-106 (133)
No 1
>KOG3513|consensus
Probab=100.00 E-value=2.4e-47 Score=386.14 Aligned_cols=428 Identities=22% Similarity=0.316 Sum_probs=324.8
Q ss_pred cEEEeecCC------CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCeEEeecceeEeecCCCeEE
Q psy3718 3 NFFFYRGFN------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPEFEIKLRNQTSRRGEPSVL 71 (543)
Q Consensus 3 ~~~~~~~~~------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~~~~~~~~~~v~~g~~~~l 71 (543)
-++|.++.+ ++.++.||+|.|.| |+|.|+|+|.|.+|.. ..+.|.|..+++|+..|++..+..|+.+.|
T Consensus 457 ~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l 536 (1051)
T KOG3513|consen 457 KVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTL 536 (1051)
T ss_pred eEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEE
Confidence 467766544 55667999999999 9999999999999997 678999999999999999999999999999
Q ss_pred EEEeeccCC--ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceeeeee-eeccc
Q psy3718 72 QCEAKGEKP--IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMT-YEASG 148 (543)
Q Consensus 72 ~C~~~g~p~--~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~~~~-~~v~~ 148 (543)
.|.+..++. +.+.|.+||.+++............ ..+. +.|+|.|++..|+|.|.|+|+....++.... ..+++
T Consensus 537 ~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~--~~~~-g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~g 613 (1051)
T KOG3513|consen 537 TCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEIND--GSDS-GRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRG 613 (1051)
T ss_pred EeecccCCCcceEEEEEECCEEhhccCCCCceEEeC--CcCc-cceEEEeeccccCceEEEEEEEeecchhcccceEEec
Confidence 999998876 6888999999987765443333322 1222 4699999999999999999999644432111 11111
Q ss_pred ccccceEEEEEEEecccCCCCCCCcEEee-------ecCCCCcceeEeccCcccccccceecccccccc----CCCCccc
Q psy3718 149 LKKKQNYIFYVTASTNIGEGQPSKNVTLS-------PSNRVPARIASFNDNFTATYTEDIKLPCLTVGV----PAPEIIW 217 (543)
Q Consensus 149 l~~~~~y~~~v~a~~~~g~~~~s~~~~~~-------pi~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~----p~p~~~w 217 (543)
.|+..-.+.+.. ....+..+.|+ ||..| .|+++....+.|....+++....|. -.++..|
T Consensus 614 -pPgpP~~v~~~~-----i~~t~~~lsW~~g~dn~SpI~~Y---~iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pw 684 (1051)
T KOG3513|consen 614 -PPGPPPDVHVDD-----ISDTTARLSWSPGSDNNSPIEKY---TIQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPW 684 (1051)
T ss_pred -CCCCCCceeEee-----eccceEEEEeecCCCCCCCceEE---eEEecCCCCCcceEeeECCCcccCccceeEEccCCC
Confidence 011100111111 11111222222 89999 9999999999999998888877642 3466788
Q ss_pred eEEEEEEEEEcCCCCCCCCccE-EEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCC
Q psy3718 218 KTYHIRIVAENEIGSSEPSDTV-TILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKP 296 (543)
Q Consensus 218 ~~y~~~v~a~n~~G~~~~s~~~-~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~ 296 (543)
..|+|||.|.|..|.+++|.+. .++|.+++|...|.++.......+.+.|.|++.....++++..+|+|.|+..+....
T Consensus 685 v~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~ 764 (1051)
T KOG3513|consen 685 VEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKE 764 (1051)
T ss_pred cceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCcc
Confidence 9999999999999999999876 678999999999999999999999999999999888889999999999999998855
Q ss_pred ceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcceeeeccCCCCCCCCCCcEEEEeccCeEEEEccC
Q psy3718 297 FLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVS 376 (543)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~ 376 (543)
|....+. .......-+......|++.|+++|+|+|..|.|+.+....+.+.++.|..+|..+.+...+.+.+.|.|++
T Consensus 765 W~~~~v~--~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W~~ 842 (1051)
T KOG3513|consen 765 WKEVIVS--NQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNLSWKP 842 (1051)
T ss_pred cceeEec--ccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEEEecC
Confidence 5544442 11122333344556779999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCC
Q psy3718 377 PPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPR 456 (543)
Q Consensus 377 p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~ 456 (543)
|. ..||.+++|.|+|+..+..++...... ..-+.
T Consensus 843 ~~-------------------------------------------~~nG~l~gY~v~Y~~~~~~~~~~~~~~---i~~~~ 876 (1051)
T KOG3513|consen 843 PL-------------------------------------------WDNGKLTGYEVKYWKINEKEGSLSRVQ---IAGNR 876 (1051)
T ss_pred cC-------------------------------------------ccCCccceeEEEEEEcCCCccccccee---ecCCc
Confidence 73 234566666666666554311111111 11233
Q ss_pred CccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcccccc
Q psy3718 457 GRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRV 504 (543)
Q Consensus 457 ~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~v 504 (543)
....++||+|. .|.|.|+| .|.+|.|+.+....+
T Consensus 877 ~~~~ltgL~~~T~Y~~~vrA--------------~nsaG~Gp~s~~~~~ 911 (1051)
T KOG3513|consen 877 TSWRLTGLEPNTKYRFYVRA--------------YTSAGGGPASSEENV 911 (1051)
T ss_pred ceEeeeCCCCCceEEEEEEE--------------ecCCCCCCCccceec
Confidence 33455599999 99999999 999998888665555
No 2
>KOG4221|consensus
Probab=100.00 E-value=6.4e-47 Score=380.42 Aligned_cols=356 Identities=26% Similarity=0.412 Sum_probs=288.5
Q ss_pred ecCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCe
Q psy3718 16 LGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNK 90 (543)
Q Consensus 16 ~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~ 90 (543)
+..++|.|++ |+|.|+|+|+|..... +++.|+|+.||.|...|.+...-++.++.|.|.+.|.|.|.+.|+|+|.
T Consensus 288 ~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd 367 (1381)
T KOG4221|consen 288 VGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGD 367 (1381)
T ss_pred ecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCc
Confidence 3367999999 9999999999977775 7899999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceeee-----------------------------
Q psy3718 91 RLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQ----------------------------- 141 (543)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~~----------------------------- 141 (543)
.+.+.+ .+.+. .+ ++|.|..+-.+|.|.|.|.|+|..|.++.
T Consensus 368 ~~ipsd--y~ki~----~~---~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~ 438 (1381)
T KOG4221|consen 368 RIIPSD--YFKIV----GG---GNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANL 438 (1381)
T ss_pred ccCccc--ceEec----CC---CCcEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceeccc
Confidence 987633 44432 22 24999999999999999999999665320
Q ss_pred --------------------------------------------eeeecccccccceEEEEEEEecccCCCCCCCcEEee
Q psy3718 142 --------------------------------------------MTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLS 177 (543)
Q Consensus 142 --------------------------------------------~~~~v~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~ 177 (543)
....+..|.|.+.|.|+|.|.|..|.|.++..+.+.
T Consensus 439 ~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~ 518 (1381)
T KOG4221|consen 439 VSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVT 518 (1381)
T ss_pred ccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEe
Confidence 233456688999999999999999999888777765
Q ss_pred -------------------------------ecCCCCcceeEeccCcccccccceecc--ccccc-cCCCCccceEEEEE
Q psy3718 178 -------------------------------PSNRVPARIASFNDNFTATYTEDIKLP--CLTVG-VPAPEIIWKTYHIR 223 (543)
Q Consensus 178 -------------------------------pi~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~g-~p~p~~~w~~y~~~ 223 (543)
|+.+| .+.+..+..+.|....... ....| .|. +.|.|+
T Consensus 519 t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~y---k~~ys~~~~~~~~~~~~n~~e~ti~gL~k~-----TeY~~~ 590 (1381)
T KOG4221|consen 519 TQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGY---KLFYSEDDTGKELRVENNATEYTINGLEKY-----TEYSIR 590 (1381)
T ss_pred cCCCCCccccccccCcceEEEEecCCCCCCCCceEE---EEEEEcCCCCceEEEecCccEEEeecCCCc-----cceEEE
Confidence 45555 5655554344333322111 11133 788 999999
Q ss_pred EEEEcCCCCCCCCccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEe
Q psy3718 224 IVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVD 303 (543)
Q Consensus 224 v~a~n~~G~~~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~ 303 (543)
|.|.|..|.+..|..+.+.+..+.|..||.|+.+...++++|.|+|.+|.....++.+.+|.++|+.........+..+
T Consensus 591 vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v- 669 (1381)
T KOG4221|consen 591 VVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVV- 669 (1381)
T ss_pred EEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeec-
Confidence 9999999999999999999999999999999999999999999999999998889999999999997765544333333
Q ss_pred eeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcceeeeccCCCCC----CCCCCcEEEEeccCeEEEEccCCCC
Q psy3718 304 FSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPE----QPPQDNTCTTLTSQTIRVSWVSPPL 379 (543)
Q Consensus 304 ~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~~~p~----~~P~~~~~~~~~~~~v~l~W~~p~~ 379 (543)
.++.+.|.+.+|+|++.|.|+|.|.+..|.|++|++..+.|....+. .+|..+.+ ....+++.+.|.||+
T Consensus 670 ----~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps~l~~-~~g~~si~vsW~Pp~- 743 (1381)
T KOG4221|consen 670 ----KGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVPGKPSELHV-HPGSNSIVVSWTPPP- 743 (1381)
T ss_pred ----ccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCCCCCceeee-ccCceeEEEEeCCCC-
Confidence 45778999999999999999999999999999999999999754332 13444443 345678999999885
Q ss_pred CCCCCceEEEEEEEEeC
Q psy3718 380 ITANGVIKGYKVVYGPS 396 (543)
Q Consensus 380 ~~~~~~i~~Y~v~~~~~ 396 (543)
..+..+.||+|.|++.
T Consensus 744 -~~~~~vrgY~ig~r~g 759 (1381)
T KOG4221|consen 744 -HPNIVVRGYKIGYRPG 759 (1381)
T ss_pred -ChhhhhcceEEeeecc
Confidence 5677899999999653
No 3
>KOG4221|consensus
Probab=100.00 E-value=2.6e-44 Score=361.74 Aligned_cols=434 Identities=25% Similarity=0.353 Sum_probs=314.6
Q ss_pred CeEEecCceEEEec----CCeEEEEEEecCCCCC--CCceEEEeCC------CeEEeecceeEeecCCCeEEEEEeeccC
Q psy3718 12 PRILLGRVLLPIGE----SSFHFDPELLNPSFNG--FPPLLLSSAP------PEFEIKLRNQTSRRGEPSVLQCEAKGEK 79 (543)
Q Consensus 12 ~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~--~s~~l~v~~~------p~~~~~~~~~~v~~g~~~~l~C~~~g~p 79 (543)
+.+++.+|.|.|.+ |.|.|+|.+++..-+. ..+.|+|..- -.|...|++..+..|+++.|.|.++|.|
T Consensus 186 r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p 265 (1381)
T KOG4221|consen 186 RVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVP 265 (1381)
T ss_pred cEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCC
Confidence 44558899999999 9999999999987654 3478888532 2467789999999999999999999999
Q ss_pred CceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccce--------eeeee------ee
Q psy3718 80 PIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS--------SQQMT------YE 145 (543)
Q Consensus 80 ~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s--------v~~~~------~~ 145 (543)
.|.|.|+||++.|..+. .++.+- ..++|.|.+++..|+|.|+|.|+|...+ |+.+| .+
T Consensus 266 ~p~v~Wlrng~~i~~ds-~rivl~-------g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~ 337 (1381)
T KOG4221|consen 266 KPSVKWLRNGEKISVDS-YRIVLV-------GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTT 337 (1381)
T ss_pred CCceEEeeCCeeeeecc-eEEEEe-------cccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcc
Confidence 99999999999997644 444432 2258999999999999999999995222 11111 00
Q ss_pred ccccc-------------cc--------------ceEEE--------------------EEEEecccCCCCCCCcEEee-
Q psy3718 146 ASGLK-------------KK--------------QNYIF--------------------YVTASTNIGEGQPSKNVTLS- 177 (543)
Q Consensus 146 v~~l~-------------~~--------------~~y~~--------------------~v~a~~~~g~~~~s~~~~~~- 177 (543)
+...+ |- ..|.- .+.+.|..|.......+...
T Consensus 338 l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~ 417 (1381)
T KOG4221|consen 338 LVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVP 417 (1381)
T ss_pred eeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhheecc
Confidence 00000 00 00000 11111111111111111000
Q ss_pred ---------------------------------------ecCCCCcceeEeccCcccccccceeccc--cc----cccCC
Q psy3718 178 ---------------------------------------PSNRVPARIASFNDNFTATYTEDIKLPC--LT----VGVPA 212 (543)
Q Consensus 178 ---------------------------------------pi~~~~~~~v~~~~~~~~~~~~~~~~~~--~~----~g~p~ 212 (543)
++..| .+.+.. ....|........ .. +-.|.
T Consensus 418 ~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~---~v~~~~-~~~~rer~~~tss~g~~~tv~nl~p~ 493 (1381)
T KOG4221|consen 418 QPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTY---TVFYKV-EGDVRERLQNTSSPGIQVTVQNLSPL 493 (1381)
T ss_pred CCcccccCccccCCcceecccccceeEEEeecCccccCCCcceE---EEEEec-CCchhhhheeccCCceEEEeeecccc
Confidence 11111 122222 1222222222111 11 11788
Q ss_pred CCccceEEEEEEEEEcCCCCCCCCccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcC
Q psy3718 213 PEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETS 292 (543)
Q Consensus 213 p~~~w~~y~~~v~a~n~~G~~~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~ 292 (543)
+.|.|+|.|.|..|.+..+.++.+.+.+.. ++ .+.+...+..++.+.|++|... ++++++|++.|...+
T Consensus 494 -----t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEg---p~-~~~a~ats~~ti~v~WepP~~~--n~~I~~yk~~ys~~~ 562 (1381)
T KOG4221|consen 494 -----TMYFFRVRAKNEAGSGESSAPLKVTTQPEG---PV-QLQAYATSPTTILVTWEPPPFG--NGPITGYKLFYSEDD 562 (1381)
T ss_pred -----eeEEEEEeccCcccCCccCCceEEecCCCC---Cc-cccccccCcceEEEEecCCCCC--CCCceEEEEEEEcCC
Confidence 999999999999999999999999877662 33 3888888999999999999866 899999999998774
Q ss_pred CCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcceeeeccCCCCCCCCCCcEEEEeccCeEEE
Q psy3718 293 TDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRV 372 (543)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l 372 (543)
...+ ..+ ..+..+++|.+|+++++|.|+|.|.|.+|.|..|..+.+.|..+.|+.||.|+++...++++|.|
T Consensus 563 ~~~~---~~~-----~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrV 634 (1381)
T KOG4221|consen 563 TGKE---LRV-----ENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRV 634 (1381)
T ss_pred CCce---EEE-----ecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEE
Confidence 4322 222 34778999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCceEEEEEEEEeCCc-----ccCCCCCC-----------c-----------------------------
Q psy3718 373 SWVSPPLITANGVIKGYKVVYGPSDT-----WYGDPKTD-----------I----------------------------- 407 (543)
Q Consensus 373 ~W~~p~~~~~~~~i~~Y~v~~~~~~~-----~~~~~~~~-----------~----------------------------- 407 (543)
.|.+|+.+..+|.|.+|+|+|+.... |....-.. +
T Consensus 635 sW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d 714 (1381)
T KOG4221|consen 635 SWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESD 714 (1381)
T ss_pred EccCCCcccccceEEEEEEEecccCcccccceeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCcccc
Confidence 99999989999999999999996431 11111000 0
Q ss_pred -----------------cceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCcccc--ccccCc-
Q psy3718 408 -----------------CTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMY--EELKSQ- 467 (543)
Q Consensus 408 -----------------~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~p~- 467 (543)
.+.+.+.|.|| .+++-.+.+|+|.|+..... .+...+. ++..+..+ ..|.|+
T Consensus 715 ~~e~vp~~ps~l~~~~g~~si~vsW~Pp--~~~~~~vrgY~ig~r~g~~~-p~~~tIr-----l~~~~s~y~l~~Le~~~ 786 (1381)
T KOG4221|consen 715 LDERVPGKPSELHVHPGSNSIVVSWTPP--PHPNIVVRGYKIGYRPGSGI-PDTGTIR-----LDEKVSYYNLEQLEPNR 786 (1381)
T ss_pred ccccCCCCCceeeeccCceeEEEEeCCC--CChhhhhcceEEeeecccCC-CCCccEE-----ecceeeEEEEEecccCc
Confidence 48999999999 88888999999999754443 3355555 66655444 499999
Q ss_pred eeeEEEEeCCCCCCCCCCccccccccccCCC
Q psy3718 468 GRGYLVPRGGPPPCPGSDETLYSRHRGESDK 498 (543)
Q Consensus 468 ~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~ 498 (543)
.|.++++| .|..|+|.+
T Consensus 787 ~YvVkL~A--------------fNn~gdG~p 803 (1381)
T KOG4221|consen 787 DYVVKLRA--------------FNNHGDGNP 803 (1381)
T ss_pred eEEEEEEE--------------eccCCCCcc
Confidence 99999999 999999987
No 4
>KOG3513|consensus
Probab=100.00 E-value=1.2e-39 Score=330.57 Aligned_cols=375 Identities=21% Similarity=0.338 Sum_probs=259.6
Q ss_pred ccEEEeecCC----CeEE--ecCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCeEEeecceeEeecCCCeE
Q psy3718 2 ENFFFYRGFN----PRIL--LGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPEFEIKLRNQTSRRGEPSV 70 (543)
Q Consensus 2 ~~~~~~~~~~----~~~~--~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~~~~~~~~~~v~~g~~~~ 70 (543)
|.+.|.|.+. +|.. ..+.+|.|.| |+|.|+|.|.|..|.. ...+|+|+++|.++..+++..+..|++++
T Consensus 271 P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~ 350 (1051)
T KOG3513|consen 271 PQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVT 350 (1051)
T ss_pred CcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeE
Confidence 6788987555 3333 3456999999 9999999999999975 56899999999999999999999999999
Q ss_pred EEEEeeccCCceEEEccCCeecCCCCC-CceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee---------
Q psy3718 71 LQCEAKGEKPIGILWNMNNKRLDPKSD-NRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ--------- 140 (543)
Q Consensus 71 l~C~~~g~p~~~i~W~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~--------- 140 (543)
|.|.+.|.|.|++.|++||.++...+. .++.+.. +.|.|.+++.+|+|.|.|.|+|..|.+-
T Consensus 351 ~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~--------g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a 422 (1051)
T KOG3513|consen 351 LECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDD--------GTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLA 422 (1051)
T ss_pred EEEEecCCCCCceEEeeCCeecCccCCCcceEEeC--------CEEEEEecccccCeEEEeeeecccceEeeeeEEEEEc
Confidence 999999999999999999999974332 3355543 2799999999999999999999976521
Q ss_pred -------------------------------------------------------eeeeecccccccceEEEEEEEeccc
Q psy3718 141 -------------------------------------------------------QMTYEASGLKKKQNYIFYVTASTNI 165 (543)
Q Consensus 141 -------------------------------------------------------~~~~~v~~l~~~~~y~~~v~a~~~~ 165 (543)
+..+.+..+.....-.+.+.|.|..
T Consensus 423 ~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~ 502 (1051)
T KOG3513|consen 423 SAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKL 502 (1051)
T ss_pred cCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEccc
Confidence 1122223333333445556666666
Q ss_pred CCCCCCCcEEeeecCCCCcceeEeccCcccccccceeccccccc--cCCCCccc--------------------------
Q psy3718 166 GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVG--VPAPEIIW-------------------------- 217 (543)
Q Consensus 166 g~~~~s~~~~~~pi~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g--~p~p~~~w-------------------------- 217 (543)
|+......+.+.-.+. ++....+....-.....+.|...- .....+.|
T Consensus 503 G~a~~~~~L~Vkd~tr----i~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~ 578 (1051)
T KOG3513|consen 503 GKAESTGNLIVKDATR----ITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGR 578 (1051)
T ss_pred CccceEEEEEEecCce----EEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccc
Confidence 6554333333320000 000000011111111112222110 00001111
Q ss_pred ---------eEEEEEEEEEcCCCCCCCCccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEE
Q psy3718 218 ---------KTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGY 288 (543)
Q Consensus 218 ---------~~y~~~v~a~n~~G~~~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~ 288 (543)
....|.|.+............+.++ .|+.||.++.+...+.+++.|+|.+..+. +++|..|.|++
T Consensus 579 L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~----gpPgpP~~v~~~~i~~t~~~lsW~~g~dn--~SpI~~Y~iq~ 652 (1051)
T KOG3513|consen 579 LTIANVSLEDSGKYTCVAQTALDSASARADLLVR----GPPGPPPDVHVDDISDTTARLSWSPGSDN--NSPIEKYTIQF 652 (1051)
T ss_pred eEEEeeccccCceEEEEEEEeecchhcccceEEe----cCCCCCCceeEeeeccceEEEEeecCCCC--CCCceEEeEEe
Confidence 2235666666555444444456665 34567779999999999999999999887 68899999999
Q ss_pred EEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcce-eeeccCCCCCCCCCCcEEEEecc
Q psy3718 289 KETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV-KQYTAEGTPEQPPQDNTCTTLTS 367 (543)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~-~~~t~~~~p~~~P~~~~~~~~~~ 367 (543)
+..-...+....++.... .+. .+.++-+|.|...|+|||+|+|..|.|.+|.+. ...|.+++|...|.++.......
T Consensus 653 rt~~~~~W~~v~~vp~~~-~~~-~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~ 730 (1051)
T KOG3513|consen 653 RTPFPGKWKAVTTVPGNI-TGD-ESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSP 730 (1051)
T ss_pred cCCCCCcceEeeECCCcc-cCc-cceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCC
Confidence 887555443333332111 122 367889999999999999999999999888765 48899999999999999988888
Q ss_pred CeEEEEccCCCCCCCCCceEEEEEEEEeC
Q psy3718 368 QTIRVSWVSPPLITANGVIKGYKVVYGPS 396 (543)
Q Consensus 368 ~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~ 396 (543)
+.+.|.|+|.+.+.++|.-.+|+|.|++.
T Consensus 731 ~eLvItW~Pl~~~~qNG~gfgY~Vswr~~ 759 (1051)
T KOG3513|consen 731 TELVITWEPLPEEEQNGPGFGYRVSWRPQ 759 (1051)
T ss_pred ceEEEEeccCCHHHccCCCceEEEEEEeC
Confidence 99999999887666666666666666553
No 5
>KOG4222|consensus
Probab=100.00 E-value=7.6e-33 Score=277.93 Aligned_cols=457 Identities=20% Similarity=0.250 Sum_probs=302.7
Q ss_pred CeEEecCceEEEec----CCeEEEEEEecCCCCCCC--ceEEEeCCCeEEeecceeEeecCCCeEEEEEeeccCCceEEE
Q psy3718 12 PRILLGRVLLPIGE----SSFHFDPELLNPSFNGFP--PLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILW 85 (543)
Q Consensus 12 ~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~~s--~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W 85 (543)
.+.++++|.|.|.| |+|.|.|+|.|.+|+..+ ++|.|+.+|.|..+|.++.+.+|..+.|.|.+.|+|.|.+.|
T Consensus 180 ~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrw 259 (1281)
T KOG4222|consen 180 IIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRW 259 (1281)
T ss_pred eEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceee
Confidence 45568899999999 999999999999999743 799999999999999999999999999999999999999999
Q ss_pred ccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee--------eeeeeecccccccceEEE
Q psy3718 86 NMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS--------QQMTYEASGLKKKQNYIF 157 (543)
Q Consensus 86 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv--------~~~~~~v~~l~~~~~y~~ 157 (543)
.+++..+. ..++.|..+ ..+|.|.++++.|.|.|.|.|.|..|.. +..+-..........|.=
T Consensus 260 kk~~~~~P---~~ry~i~~d------~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg 330 (1281)
T KOG4222|consen 260 KKDDPSLP---RSRYSILDD------TQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALG 330 (1281)
T ss_pred eccCCCCC---ccceeeeec------cccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccC
Confidence 99887774 235555432 1379999999999999999999996652 221111111111111110
Q ss_pred EEEEecccCCCCCCCcEEee------------------------------------------------------------
Q psy3718 158 YVTASTNIGEGQPSKNVTLS------------------------------------------------------------ 177 (543)
Q Consensus 158 ~v~a~~~~g~~~~s~~~~~~------------------------------------------------------------ 177 (543)
+..-+.+...|.|...+.|.
T Consensus 331 ~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~q 410 (1281)
T KOG4222|consen 331 GTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQ 410 (1281)
T ss_pred ceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEE
Confidence 11111111222222222221
Q ss_pred --ecCC-CCcceeEeccC-cccccccceeccccccccCCCCccc------------------------------eEEEEE
Q psy3718 178 --PSNR-VPARIASFNDN-FTATYTEDIKLPCLTVGVPAPEIIW------------------------------KTYHIR 223 (543)
Q Consensus 178 --pi~~-~~~~~v~~~~~-~~~~~~~~~~~~~~~~g~p~p~~~w------------------------------~~y~~~ 223 (543)
.+.. =|..+|+.... -...-.....+.|...+.|.|.|.| +.|.|+
T Consensus 411 t~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YT 490 (1281)
T KOG4222|consen 411 TDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYT 490 (1281)
T ss_pred EeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCccee
Confidence 0000 01112221110 0011112223666667789999999 356899
Q ss_pred EEEEcCCCCCCCCccEEEeccC-----------CCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcC
Q psy3718 224 IVAENEIGSSEPSDTVTILTAE-----------EAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETS 292 (543)
Q Consensus 224 v~a~n~~G~~~~s~~~~~~t~~-----------~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~ 292 (543)
|.|.+..|++.+++.+.+.... ...+++|..-.+..+..+++.++|.+....+ ..++..|.++|...+
T Consensus 491 c~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg-~vP~s~yiieafs~~ 569 (1281)
T KOG4222|consen 491 CIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSG-AVPASGYIIEAFSPD 569 (1281)
T ss_pred eeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCC-ccccchhHHHHhhhh
Confidence 9999999999998877654221 1223456566677888999999999987743 678889999886655
Q ss_pred CCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCccee-eeccCCCCCCCC------------CC
Q psy3718 293 TDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVK-QYTAEGTPEQPP------------QD 359 (543)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~-~~t~~~~p~~~P------------~~ 359 (543)
..+.|....- ....+.+.|.+|+|++.|.|.|+|.|..|.+.++.... ++|.+..+...- ..
T Consensus 570 ~~etw~~ta~-----~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l 644 (1281)
T KOG4222|consen 570 LGETWQTTAG-----RVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNEL 644 (1281)
T ss_pred hccccccccc-----ccccceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccc
Confidence 5444433222 22567899999999999999999999999876554332 333222111110 01
Q ss_pred cE---EEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCc----ccCCCCCCc-------------------------
Q psy3718 360 NT---CTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT----WYGDPKTDI------------------------- 407 (543)
Q Consensus 360 ~~---~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~----~~~~~~~~~------------------------- 407 (543)
++ ...+++.++.+.|..+.. .....|.+|+|.|+.... |........
T Consensus 645 ~~l~~~~~L~asslr~~w~~~kq-~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~ 723 (1281)
T KOG4222|consen 645 LRLSNPNVLNASSLRLGWTKDKQ-HGSQYIQGYRISYRSLGSQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFP 723 (1281)
T ss_pred eeeccccccchhheeeeeeeecc-cCcccccceEEEeccCccccccccccceeccCCcceeccccCCCccceeeccCccC
Confidence 11 224578899999997622 236789999999998653 322221111
Q ss_pred --------------------------------------cceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccce
Q psy3718 408 --------------------------------------CTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRN 449 (543)
Q Consensus 408 --------------------------------------~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~ 449 (543)
.+++.|+|.+|+....||.+.+|.|..-.... .....+
T Consensus 724 ~~~s~~g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~e~----tr~h~n 799 (1281)
T KOG4222|consen 724 HGYSIQGAPSNSKTALTLEEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKIECSGGEK----TRIHIN 799 (1281)
T ss_pred CCcceecCCcccccccccccCCCCCCCCccccccccCCCceeeEEecCCcccccCCcccceeEEeecCcc----cccccc
Confidence 48899999999889999999999998654331 111111
Q ss_pred eeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcccc
Q psy3718 450 HCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKND 502 (543)
Q Consensus 450 ~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~ 502 (543)
...........+-+|.++ .|.|+|.| .|.+|.|..++..
T Consensus 800 ~t~~a~~~sv~i~~l~~g~ay~vtv~a--------------~T~aGvG~~s~p~ 839 (1281)
T KOG4222|consen 800 KTTNARTGSVTIGNLVTGIAYSVTVAA--------------RTGAGVGVKSPPQ 839 (1281)
T ss_pred ccccCCCCceEeccccccceEEEEEee--------------ecCCccCCCCCCe
Confidence 111133344555599999 99999999 9999999865433
No 6
>KOG4222|consensus
Probab=99.92 E-value=4.2e-24 Score=215.57 Aligned_cols=365 Identities=23% Similarity=0.340 Sum_probs=256.1
Q ss_pred CeEEec-CceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCeEEeecceeEeecCCCeEEEEEeeccCCceEEE
Q psy3718 12 PRILLG-RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILW 85 (543)
Q Consensus 12 ~~~~~~-~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W 85 (543)
++.++. +-+|.|.+ |.|.|.|.|.|.+|.. +++.|+|+.||.|..+|.+..+-.|..++|.|.+.|.|.|.+.|
T Consensus 270 ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW 349 (1281)
T KOG4222|consen 270 RYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFW 349 (1281)
T ss_pred ceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEE
Confidence 344444 48999999 9999999999999986 88999999999999999999999999999999999999999999
Q ss_pred ccCCeec------CCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee------------e------
Q psy3718 86 NMNNKRL------DPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ------------Q------ 141 (543)
Q Consensus 86 ~~~~~~i------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~------------~------ 141 (543)
.+.|... .+..+.+..+. ..| +|+|.+++.+|.|.|.|...+..++.. +
T Consensus 350 ~keg~q~llf~~~p~~~~~r~svs----~~g---~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~ 422 (1281)
T KOG4222|consen 350 LKEGSQDLLFSASPPSSNGRGSVS----PTG---TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPI 422 (1281)
T ss_pred eccCcceecccCCCCCcCccceec----CCC---CcccccccccccceEeecccccccccccceeEEEEeeeccCCCCce
Confidence 9987532 11233444443 233 799999999999999999877754411 0
Q ss_pred ---------------------------------------------------eeeecccccccceEEEEEEEecccCCCCC
Q psy3718 142 ---------------------------------------------------MTYEASGLKKKQNYIFYVTASTNIGEGQP 170 (543)
Q Consensus 142 ---------------------------------------------------~~~~v~~l~~~~~y~~~v~a~~~~g~~~~ 170 (543)
-..++..+.-...+.+...+....|+...
T Consensus 423 i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~w 502 (1281)
T KOG4222|consen 423 IEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTW 502 (1281)
T ss_pred eeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCccccccc
Confidence 01111222222344444555555555554
Q ss_pred CCcEEee-----------------------------------------------ecCCCCcceeEe-ccCccccccccee
Q psy3718 171 SKNVTLS-----------------------------------------------PSNRVPARIASF-NDNFTATYTEDIK 202 (543)
Q Consensus 171 s~~~~~~-----------------------------------------------pi~~~~~~~v~~-~~~~~~~~~~~~~ 202 (543)
+..+.+. |+..| ++++ ..+....|.....
T Consensus 503 Satl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~y---iieafs~~~~etw~~ta~ 579 (1281)
T KOG4222|consen 503 SATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGY---IIEAFSPDLGETWQTTAG 579 (1281)
T ss_pred ceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchh---HHHHhhhhhccccccccc
Confidence 4444443 44444 5442 2333344444333
Q ss_pred ccccc----c-ccCCCCccceEEEEEEEEEcCCCCCCCCccE-EEeccCCCCC-------------C--CCeeeEEEecC
Q psy3718 203 LPCLT----V-GVPAPEIIWKTYHIRIVAENEIGSSEPSDTV-TILTAEEAPS-------------G--PPTHIKVEATD 261 (543)
Q Consensus 203 ~~~~~----~-g~p~p~~~w~~y~~~v~a~n~~G~~~~s~~~-~~~t~~~~p~-------------~--~P~~~~~~~~~ 261 (543)
..... . ..|. ..|.|.|+|.|..|.+.++... .+++.+..+. + .-+......+.
T Consensus 580 ~v~~t~~~I~gL~P~-----~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~ 654 (1281)
T KOG4222|consen 580 RVKTTTYAIRGLKPN-----LSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLN 654 (1281)
T ss_pred ccccceeeecCcCcc-----ceeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccc
Confidence 22222 1 2788 9999999999999987766433 2333322110 0 00111223457
Q ss_pred CCeEEEEeeCCCCCCCCcceeEEEEEEEEcCC-CCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCC---C
Q psy3718 262 QNTLKVSWSPPERDHWNGVIQGYYVGYKETST-DKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG---P 337 (543)
Q Consensus 262 ~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G---~ 337 (543)
++++.+.|......+ ...+.+|+|.|+..+. ...+....+. ......+.+.+|+|++.|+|.+..+-..| .
T Consensus 655 asslr~~w~~~kq~~-~~~i~g~~I~~r~~~~~~a~~s~~~v~----~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~ 729 (1281)
T KOG4222|consen 655 ASSLRLGWTKDKQHG-SQYIQGYRISYRSLGSQLAQWSNAGVT----VPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQ 729 (1281)
T ss_pred hhheeeeeeeecccC-cccccceEEEeccCcccccccccccee----ccCCcceeccccCCCccceeeccCccCCCccee
Confidence 889999999987654 5689999999998776 2233333332 34567889999999999999999998755 5
Q ss_pred CCCCcceeeeccCCCCCCCCCCc---EEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeC
Q psy3718 338 GPMSEEVKQYTAEGTPEQPPQDN---TCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPS 396 (543)
Q Consensus 338 s~~s~~~~~~t~~~~p~~~P~~~---~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~ 396 (543)
|.+++...+.|.+.+|..+|..+ ..-..+.++..|+|.+|+..-.++.+.+|.|.....
T Consensus 730 g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~ 791 (1281)
T KOG4222|consen 730 GAPSNSKTALTLEEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKIECSGG 791 (1281)
T ss_pred cCCcccccccccccCCCCCCCCccccccccCCCceeeEEecCCcccccCCcccceeEEeecC
Confidence 66788888999999999899985 333457789999999998888999999999987653
No 7
>KOG4194|consensus
Probab=99.79 E-value=8.2e-19 Score=166.62 Aligned_cols=116 Identities=17% Similarity=0.310 Sum_probs=99.3
Q ss_pred ceEEEec----CCeEEEEEEecCCCCCCC--ceEEEeCCCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCee-
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSFNGFP--PLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKR- 91 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g~~~s--~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~- 91 (543)
+.|.+.| |+|.|+|+++|.+|+..+ +.|+|...|.|+..|.++....|+.+.|.|.+.|.|.|+|.|-|+|.+
T Consensus 574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtd 653 (873)
T KOG4194|consen 574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTD 653 (873)
T ss_pred heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCC
Confidence 5777888 999999999999999754 799999999999999999999999999999999999999999999876
Q ss_pred cCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 92 LDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 92 i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
++.....|..+- ++. -.+-|.||+.+|+|.|+|.|+|.+|.++
T Consensus 654 FPAA~eRRl~Vm----ped--d~f~Itnvk~eD~GiYtC~A~n~AG~is 696 (873)
T KOG4194|consen 654 FPAARERRLHVM----PED--DVFFITNVKIEDQGIYTCTAQNVAGQIS 696 (873)
T ss_pred Cchhhhheeeec----CCC--CEEEEecccccccceeEEeeecccccee
Confidence 544444444432 232 2688999999999999999999988854
No 8
>KOG0196|consensus
Probab=99.71 E-value=7.1e-16 Score=151.68 Aligned_cols=190 Identities=22% Similarity=0.233 Sum_probs=135.5
Q ss_pred CCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCC--Cce---EEEEeeeccCCceeEEEECCCCC
Q psy3718 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDK--PFL---FETVDFSKEEGKEHHLTLSSLKT 321 (543)
Q Consensus 247 ~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~i~~L~p 321 (543)
.||++|+++... ++.+++.|.|.+|.+.+.. .-..|.|.++.-.... ... ...+...+..-.+.+..+.+|.|
T Consensus 330 ~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR-~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~a 407 (996)
T KOG0196|consen 330 RPPSAPRNLISN-VNGTSLILEWSPPADTGGR-EDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLA 407 (996)
T ss_pred CCCCccceeeee-cccceEEEEecCCcccCCC-cceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEecccc
Confidence 467799998666 8899999999999987644 4457888776654221 110 11122222233567899999999
Q ss_pred CCEEEEEEEEEeCCC-CC---CCCcceeeeccCCCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCC
Q psy3718 322 YTQYSVVVQALNKLG-PG---PMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397 (543)
Q Consensus 322 ~t~Y~~~V~a~n~~G-~s---~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~ 397 (543)
.+.|+|.|.|+|+.. .+ +....+.++|.+..|+ +...++....+.+++.|+|..|
T Consensus 408 h~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps-~V~~~r~~~~~~~sitlsW~~p-------------------- 466 (996)
T KOG0196|consen 408 HTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPS-PVSVLRQVSRTSDSITLSWSEP-------------------- 466 (996)
T ss_pred ccccEEEEEEeecccccCCCCCcceeEEeeccccCCC-ccceEEEeeeccCceEEecCCC--------------------
Confidence 999999999999864 22 2344577888887776 4456888888888888888877
Q ss_pred cccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeC
Q psy3718 398 TWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRG 476 (543)
Q Consensus 398 ~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~ 476 (543)
..+||.|..|.|+|.+.+.+......+. ...+..++.+|+|+ .|.|+|+|
T Consensus 467 -----------------------~~png~ildYEvky~ek~~~e~~~~~~~-----t~~~~~ti~gL~p~t~YvfqVRa- 517 (996)
T KOG0196|consen 467 -----------------------DQPNGVILDYEVKYYEKDEDERSYSTLK-----TKTTTATITGLKPGTVYVFQVRA- 517 (996)
T ss_pred -----------------------CCCCCcceeEEEEEeeccccccceeEEe-----cccceEEeeccCCCcEEEEEEEE-
Confidence 5557777777777777654322333333 55666777899999 99999999
Q ss_pred CCCCCCCCCccccccccccCCCccc
Q psy3718 477 GPPPCPGSDETLYSRHRGESDKCKN 501 (543)
Q Consensus 477 ~~~~~~~~~~~~~~~~~G~g~~~~~ 501 (543)
++.+|.|..|..
T Consensus 518 -------------rT~aG~G~~S~~ 529 (996)
T KOG0196|consen 518 -------------RTAAGYGPYSGK 529 (996)
T ss_pred -------------ecccCCCCCCCc
Confidence 999999988643
No 9
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.66 E-value=8.7e-16 Score=136.52 Aligned_cols=104 Identities=22% Similarity=0.250 Sum_probs=81.7
Q ss_pred CceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCeEEeecceeEeecCCCeEEEEEeec-----cCCceEEEcc
Q psy3718 18 RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKG-----EKPIGILWNM 87 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-----~p~~~i~W~~ 87 (543)
+++|.|.+ |+|.|+|.|+|..|.. .+..|.|..++ .+..+.+|+++.|.|.+.+ .|.|++.|+|
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyK 170 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYK 170 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEE
Confidence 56999999 9999999999987764 45677774332 3456789999999999863 3579999999
Q ss_pred CCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718 88 NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 88 ~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
|+.+|... .++.+.. + .+.|.|.+++.+|+|.|+|.|+..
T Consensus 171 ng~~l~~~--~r~~~~~----~--~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 171 NGNIVLYT--DRIQLRN----N--NSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred CCEECCCC--CCEEEeC----C--CCEEEECcCCHHhCEEEEEEEEEe
Confidence 99998633 3454431 1 147999999999999999999985
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.64 E-value=4.5e-15 Score=141.10 Aligned_cols=136 Identities=15% Similarity=0.217 Sum_probs=97.5
Q ss_pred ccEEEeecC---CCe-EEecCceEEEec----CCeEEEEEEecCCCCC-CC----ceEEEe---CCCeEEeecceeEeec
Q psy3718 2 ENFFFYRGF---NPR-ILLGRVLLPIGE----SSFHFDPELLNPSFNG-FP----PLLLSS---APPEFEIKLRNQTSRR 65 (543)
Q Consensus 2 ~~~~~~~~~---~~~-~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s----~~l~v~---~~p~~~~~~~~~~v~~ 65 (543)
++++|++.. +.+ ....++.|.|.+ |+|.|+|.|.|..|.. .. +.|.|. .||.+ ..|..+.+..
T Consensus 156 ~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~ 234 (326)
T PHA02785 156 ADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSI 234 (326)
T ss_pred ceEEEccCCccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecC
Confidence 467887632 223 335578999999 9999999999998864 22 346664 35554 4567888889
Q ss_pred CCCeEEEEEeeccCC---ceEEEccCCeecCCCCC---CceEEeeeecC-C---CceeeEEEEeeecCCCccEEEEEecc
Q psy3718 66 GEPSVLQCEAKGEKP---IGILWNMNNKRLDPKSD---NRYTIREEILP-N---GVLSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 66 g~~~~l~C~~~g~p~---~~i~W~~~~~~i~~~~~---~~~~~~~~~~~-~---~~~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
|+.++|.|.+.|.|. +.+.|++||.+|...+. .++.+...... + .....|.|.+++.+|+|.|+|.|.|.
T Consensus 235 G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~ 314 (326)
T PHA02785 235 GSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTI 314 (326)
T ss_pred CCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEec
Confidence 999999999999886 48999999998854321 23333221100 1 12357999999999999999999997
Q ss_pred cce
Q psy3718 136 KIS 138 (543)
Q Consensus 136 ~~s 138 (543)
.+.
T Consensus 315 ~~~ 317 (326)
T PHA02785 315 PSI 317 (326)
T ss_pred cCc
Confidence 643
No 11
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.63 E-value=4.6e-15 Score=141.06 Aligned_cols=127 Identities=13% Similarity=0.171 Sum_probs=93.7
Q ss_pred ccEEEeecCC---CeEEecCce-EEEec----CCeEEEEEEecCCCCC-CCceEEEe--CCCeEEeecceeEeecCCCeE
Q psy3718 2 ENFFFYRGFN---PRILLGRVL-LPIGE----SSFHFDPELLNPSFNG-FPPLLLSS--APPEFEIKLRNQTSRRGEPSV 70 (543)
Q Consensus 2 ~~~~~~~~~~---~~~~~~~g~-L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~--~~p~~~~~~~~~~v~~g~~~~ 70 (543)
+++.|+|... +.....+|+ |.|.+ |+|.|+|.|.|..|.. .++.|+|. .+|.+...+....+.+|+.+.
T Consensus 61 ~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~ 140 (326)
T PHA02785 61 LDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGE 140 (326)
T ss_pred ceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCcEE
Confidence 5689998643 244455664 88888 9999999999998865 56777773 345555445566778999999
Q ss_pred EEEE-----eeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 71 LQCE-----AKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 71 l~C~-----~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
|.|. ..+.|.+++.|+++.. + .+.++... .+ +.|.|.+++.+|+|.|+|.|.|..+..
T Consensus 141 i~C~~~~~~~~~~~~~~i~W~k~~~-~---~~~r~~~~----~~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~ 203 (326)
T PHA02785 141 MVCPNINAFIASNVNADIIWSGHRR-L---RNKRLKQR----TP---GIITIEDVRKNDAGYYTCVLKYIYGDK 203 (326)
T ss_pred EECCChhhcccCCCCceEEEccCCc-c---CCcceEec----CC---CeEEEeecChhhCeEEEEEEEeccCCE
Confidence 9997 3467889999998642 2 23344432 12 379999999999999999999986654
No 12
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.62 E-value=2.3e-15 Score=115.83 Aligned_cols=91 Identities=21% Similarity=0.312 Sum_probs=74.6
Q ss_pred CeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718 52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE 131 (543)
Q Consensus 52 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 131 (543)
|.|+..|+++.+..|+++.|.|.+.|.|.+.+.|+|||.+|.. +.++.+.. ....+.|.|.++..+|+|.|+|.
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~--~~~~~~~~----~~~~s~L~I~~~~~~D~G~Ytc~ 74 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQE--GEGIKIEN----TENSSKLTITEGQQEHCGCYTLE 74 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecC--CCcEEEEe----cCCeeEEEECCCChhhCEEEEEE
Confidence 6788899999999999999999999999999999999999963 33555432 23346899999999999999999
Q ss_pred Eecccceeeeeeeecccc
Q psy3718 132 IKSQKISSQQMTYEASGL 149 (543)
Q Consensus 132 a~n~~~sv~~~~~~v~~l 149 (543)
|.|..|... ....|.++
T Consensus 75 a~N~~G~~~-~~~~l~V~ 91 (98)
T cd05762 75 VENKLGSRQ-AQVNLTVV 91 (98)
T ss_pred EEcCCCcee-EEEEEEEe
Confidence 999998854 34444443
No 13
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.60 E-value=3.7e-15 Score=112.40 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=67.9
Q ss_pred CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC 130 (543)
Q Consensus 51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 130 (543)
||.|...+.++.+.+|+.+.|.|.+.|.|.|.+.|+|++.++.. ..++.+ .+ ..|.|.+++.+|+|.|+|
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~--~~~~~~-----~~---~~L~I~~v~~~D~G~Y~C 70 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPA--TAEISM-----SG---AVLKIFNIQPEDEGTYEC 70 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCC--CCEEec-----CC---CEEEECcCChhhCEEEEE
Confidence 68999999999999999999999999999999999999988753 223322 11 379999999999999999
Q ss_pred EEeccccee
Q psy3718 131 EIKSQKISS 139 (543)
Q Consensus 131 ~a~n~~~sv 139 (543)
.|.|..|+.
T Consensus 71 ~A~N~~G~~ 79 (88)
T cd05851 71 EAENIKGKD 79 (88)
T ss_pred EEEcCCCce
Confidence 999998875
No 14
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.56 E-value=1.7e-14 Score=110.25 Aligned_cols=84 Identities=19% Similarity=0.330 Sum_probs=71.6
Q ss_pred CCCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT 129 (543)
Q Consensus 50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 129 (543)
.||.|...|+++.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+.. +.++.+.. .+..+.|.|.++..+|+|.|+
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~--~~~~~~~~----~~~~~~L~i~~~~~~D~G~Y~ 75 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVS--SQRHQITS----TEYKSTFEISKVQMSDEGNYT 75 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCC--CCcEEEEE----cCCeeEEEECCCCcccCEeEE
Confidence 479999999999999999999999999999999999999998753 33454432 223468999999999999999
Q ss_pred EEEeccccee
Q psy3718 130 CEIKSQKISS 139 (543)
Q Consensus 130 C~a~n~~~sv 139 (543)
|.|+|..|+.
T Consensus 76 C~a~N~~G~~ 85 (92)
T cd05747 76 VVVENSEGKQ 85 (92)
T ss_pred EEEEcCCCCE
Confidence 9999998874
No 15
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.55 E-value=3.5e-14 Score=108.45 Aligned_cols=85 Identities=24% Similarity=0.355 Sum_probs=67.5
Q ss_pred CCeEEeecceeEee---cCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeee-cCCCc
Q psy3718 51 PPEFEIKLRNQTSR---RGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTE-RGDSA 126 (543)
Q Consensus 51 ~p~~~~~~~~~~v~---~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G 126 (543)
.|.|+..|.++.+. .|++++|.|.+.|.|.|++.|+|||.++......++.+. + +.|.|.++. .+|+|
T Consensus 1 ~P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~-----~---g~L~i~~~~~~~D~G 72 (94)
T cd05848 1 GPVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLI-----D---GNLIISNPSEVKDSG 72 (94)
T ss_pred CCeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEee-----C---CeEEEccCCccCcCE
Confidence 37888889887665 478999999999999999999999999864443344332 2 368999875 69999
Q ss_pred cEEEEEecccceeeeee
Q psy3718 127 LFTCEIKSQKISSQQMT 143 (543)
Q Consensus 127 ~Y~C~a~n~~~sv~~~~ 143 (543)
.|+|.|+|..|++.+..
T Consensus 73 ~Y~C~A~N~~G~~~S~~ 89 (94)
T cd05848 73 RYQCLATNSIGSILSRE 89 (94)
T ss_pred EEEEEEEcCCCeEEecc
Confidence 99999999999865443
No 16
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.54 E-value=6e-14 Score=107.26 Aligned_cols=87 Identities=22% Similarity=0.373 Sum_probs=69.5
Q ss_pred CCeEEeecceeEeecC---CCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeee-cCCCc
Q psy3718 51 PPEFEIKLRNQTSRRG---EPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTE-RGDSA 126 (543)
Q Consensus 51 ~p~~~~~~~~~~v~~g---~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G 126 (543)
.|.|...|+++.+.+| ++++|.|.+.|.|.|++.|+++|.++......++.+. + ++|.|.++. .+|+|
T Consensus 1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~-----~---g~L~I~~~~~~~D~G 72 (94)
T cd05850 1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV-----A---GNLVINNPQKARDAG 72 (94)
T ss_pred CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE-----C---CeEEEccCCccCcCE
Confidence 4788889999877666 5799999999999999999999999865444455442 2 369998865 69999
Q ss_pred cEEEEEecccceeeeeeee
Q psy3718 127 LFTCEIKSQKISSQQMTYE 145 (543)
Q Consensus 127 ~Y~C~a~n~~~sv~~~~~~ 145 (543)
.|+|.|+|..|++.+....
T Consensus 73 ~Y~C~A~N~~G~~~s~~a~ 91 (94)
T cd05850 73 SYQCLAINRCGTVVSREAN 91 (94)
T ss_pred EEEEEEEcCcCcEEEEEEE
Confidence 9999999999987654443
No 17
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.52 E-value=9.2e-14 Score=104.83 Aligned_cols=86 Identities=26% Similarity=0.425 Sum_probs=69.8
Q ss_pred EEeecceeEeecCCCeEEEEEeeccCCceEEEcc-CCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEE
Q psy3718 54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM-NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEI 132 (543)
Q Consensus 54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 132 (543)
+.+.|.++.+.+|+++.|.|.+.|.|. .+.|++ ++.++. ...++.+. .++....|.|.++..+|+|.|+|.|
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~--~~~r~~~~----~~g~~~~L~I~~v~~~D~G~Y~C~A 75 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIV--SSQRVVVQ----KEGVRSRLTIYNANIEDAGIYRCQA 75 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEec--CCCCEEEE----eCCCeeEEEEecCChHHCEEEEEEE
Confidence 456788999999999999999999998 999997 466664 33455543 2444568999999999999999999
Q ss_pred ecccceeeeeeeec
Q psy3718 133 KSQKISSQQMTYEA 146 (543)
Q Consensus 133 ~n~~~sv~~~~~~v 146 (543)
+|..|.++...+.+
T Consensus 76 ~N~~G~~~~~~i~l 89 (92)
T cd05866 76 TDAKGQTQEATVVL 89 (92)
T ss_pred EcCCCcEEEEEEEE
Confidence 99999877666554
No 18
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.50 E-value=1.5e-13 Score=106.25 Aligned_cols=89 Identities=27% Similarity=0.463 Sum_probs=72.8
Q ss_pred CCCeEEeecceeEeecCCCeEEEEEeeccCCc-eEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC-Ccc
Q psy3718 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD-SAL 127 (543)
Q Consensus 50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D-~G~ 127 (543)
.||.|.. +....+..|+++.|.|.+.|.|.| .+.|++++.++...++.++.+.......+..+.|.|.++..+| .|.
T Consensus 1 ~pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~ 79 (98)
T cd05758 1 GPPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTS 79 (98)
T ss_pred CCCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCcccccccee
Confidence 3677754 567788999999999999999998 6999999999876555678776543344556789999999955 899
Q ss_pred EEEEEeccccee
Q psy3718 128 FTCEIKSQKISS 139 (543)
Q Consensus 128 Y~C~a~n~~~sv 139 (543)
|+|.|.|..|..
T Consensus 80 Y~C~A~N~~G~~ 91 (98)
T cd05758 80 YNCTAWNSFGSG 91 (98)
T ss_pred EEEEEEcCCCcc
Confidence 999999998874
No 19
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.50 E-value=1.7e-13 Score=104.58 Aligned_cols=82 Identities=22% Similarity=0.431 Sum_probs=64.1
Q ss_pred EEeecceeEeecCCCeEEEEEeeccCC-ceEEEcc-CCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718 54 FEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNM-NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE 131 (543)
Q Consensus 54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 131 (543)
+.+.|.+..+..|++++|.|.+.|.|. |.+.|++ ++.++.. ...++.+.. .++..+.|.|.+++.+|+|.|+|.
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~-~~~r~~v~~---~~~~~~~L~I~~v~~~D~G~YtC~ 78 (96)
T cd05865 3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP-NQQRISVVR---NDDYSSTLTIYNANIDDAGIYKCV 78 (96)
T ss_pred EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc-cCCeEEEEe---CCCCceEEEEeccChhhCEEEEEE
Confidence 345678888999999999999999995 7999998 7877643 233444431 233456899999999999999999
Q ss_pred Eeccc-cee
Q psy3718 132 IKSQK-ISS 139 (543)
Q Consensus 132 a~n~~-~sv 139 (543)
|+|.. |++
T Consensus 79 A~N~~~g~~ 87 (96)
T cd05865 79 VSNEDEGES 87 (96)
T ss_pred EEcCCCCcE
Confidence 99986 553
No 20
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.50 E-value=1.6e-13 Score=102.77 Aligned_cols=75 Identities=19% Similarity=0.297 Sum_probs=62.9
Q ss_pred eeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 60 NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 60 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
.+.+.+|+++.|.|.+.|.|.|.+.|+|++.++... ..++.+.. ....+.|.|.++..+|+|.|+|.|.|..|+.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~-~~r~~~~~----~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~ 78 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTET-EGRVRVES----YKDLSSFVIEGAEREDEGVYTITVTNPVGED 78 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccC-CCeEEEEE----cCCeEEEEECCCccCcCEEEEEEEEeCCCcE
Confidence 467899999999999999999999999999998643 33555532 2234689999999999999999999998874
No 21
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.50 E-value=9.3e-14 Score=106.05 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=63.8
Q ss_pred ecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718 57 KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK 136 (543)
Q Consensus 57 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 136 (543)
-|..+.+.+|+++.|.|.+.|.|.|++.|+|++.++... .++.+.. ..+....|.|.++..+|+|.|+|.|.|..
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~--~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 81 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS--DHYNVKV---EQGKYASLTIKGVSSEDSGKYGIVVKNKY 81 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccC--CCEEEEE---cCCCEEEEEEccCChhhCEEEEEEEEECC
Confidence 356688999999999999999999999999999998643 3444331 12334679999999999999999999988
Q ss_pred cee
Q psy3718 137 ISS 139 (543)
Q Consensus 137 ~sv 139 (543)
|+.
T Consensus 82 G~~ 84 (92)
T cd05737 82 GGE 84 (92)
T ss_pred Ccc
Confidence 874
No 22
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.50 E-value=1.7e-13 Score=107.17 Aligned_cols=95 Identities=22% Similarity=0.417 Sum_probs=68.8
Q ss_pred CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEe--eecCCCccE
Q psy3718 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKR--TERGDSALF 128 (543)
Q Consensus 51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~--~~~~D~G~Y 128 (543)
||.|...|.++.+.+|+++.|.|.+.|.|.|.+.|+|+|..+........ .......++....+.+.. +..+|+|.|
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPR-SHRIVLPSGSLFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCC-cceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence 68999999999999999999999999999999999999999865211100 011112344333333332 368999999
Q ss_pred EEEEecccceeeeeeeec
Q psy3718 129 TCEIKSQKISSQQMTYEA 146 (543)
Q Consensus 129 ~C~a~n~~~sv~~~~~~v 146 (543)
+|.|+|..|+.......|
T Consensus 80 ~C~a~N~~G~~~s~~~~l 97 (100)
T cd07693 80 VCVAHNSLGEAVSRNASL 97 (100)
T ss_pred EEEEEccccceecceEEE
Confidence 999999988855444443
No 23
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.49 E-value=1.4e-13 Score=104.69 Aligned_cols=85 Identities=18% Similarity=0.297 Sum_probs=67.4
Q ss_pred CCeEEeecceeEeecCC---CeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeee-cCCCc
Q psy3718 51 PPEFEIKLRNQTSRRGE---PSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTE-RGDSA 126 (543)
Q Consensus 51 ~p~~~~~~~~~~v~~g~---~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G 126 (543)
+|.|...|.++.+.++. .+.|.|.+.|.|.|++.|+|++.++... ..++.+. + +.|.|.++. .+|+|
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~-~~~~~~~-----~---g~L~I~~~~~~~D~G 71 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLT-NDRYSMV-----G---GNLVINNPDKYKDAG 71 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCC-CCeEEEE-----C---CEEEECcCCcCCCCE
Confidence 48888889887766544 8999999999999999999999988532 3344432 2 379999885 69999
Q ss_pred cEEEEEecccceeeeeee
Q psy3718 127 LFTCEIKSQKISSQQMTY 144 (543)
Q Consensus 127 ~Y~C~a~n~~~sv~~~~~ 144 (543)
.|+|.|+|..|++.....
T Consensus 72 ~Y~C~A~N~~G~~~s~~a 89 (93)
T cd05849 72 RYVCIVSNIYGKVRSREA 89 (93)
T ss_pred EEEEEEEeCcceEEEccE
Confidence 999999999998755443
No 24
>KOG4194|consensus
Probab=99.49 E-value=1.2e-13 Score=131.93 Aligned_cols=114 Identities=21% Similarity=0.218 Sum_probs=98.6
Q ss_pred cCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCeEEeecceeEeecCCCeEEEEEeeccCC-ceEEEccCCe
Q psy3718 17 GRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNK 90 (543)
Q Consensus 17 ~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~~~ 90 (543)
.++...|.| |+|.|+|.|.|.+|.. ++|.|.|..-|.|.++.+++.|..|+++.|.|.+.|.|. |.+.|+|+++
T Consensus 667 edd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~ 746 (873)
T KOG4194|consen 667 EDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDK 746 (873)
T ss_pred CCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCC
Confidence 466888888 9999999999999986 889999999999999999999999999999999999988 9999999999
Q ss_pred ecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718 91 RLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS 138 (543)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s 138 (543)
+|.....+.+.- ...-|.+.+...+|+|+|+|...|..|.
T Consensus 747 pil~t~rh~f~d--------~dQllvv~~~~~~daG~yTcem~~~~~~ 786 (873)
T KOG4194|consen 747 PILITERHTFPD--------GDQLLVVKENLVEDAGIYTCEMSNTLGT 786 (873)
T ss_pred ceEEeecccCCC--------CCeEEEEEehhhhhcceEEEEEEeeccc
Confidence 986544333321 1135888899999999999999997665
No 25
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.48 E-value=3e-13 Score=104.06 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=61.3
Q ss_pred ceeEeecCCCeEEEEEeec-cCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccc
Q psy3718 59 RNQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKI 137 (543)
Q Consensus 59 ~~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 137 (543)
.++.+.+|+++.|.|.+.| .|+|.+.|+|||.+|... ...+............+.|.|..+..+|+|.|+|.|+|..|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNK-LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCC-cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 4688999999999999999 899999999999999632 22222111000111246899999999999999999999988
Q ss_pred ee
Q psy3718 138 SS 139 (543)
Q Consensus 138 sv 139 (543)
+.
T Consensus 90 ~~ 91 (101)
T cd04975 90 SK 91 (101)
T ss_pred cE
Confidence 74
No 26
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.48 E-value=2.2e-13 Score=104.09 Aligned_cols=82 Identities=32% Similarity=0.592 Sum_probs=71.5
Q ss_pred CeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718 52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE 131 (543)
Q Consensus 52 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 131 (543)
|+|...|.++.+.+|+++.|.|.+.|.|.+++.|++++.++.. +.++.+... +..+.|.|.++..+|+|.|+|.
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~--~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~ 74 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS--SQRYQIESD----GGSSSLTIKNVTREDAGTYTCV 74 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES--SSSEEEEEE----TTEEEEEESSESGGGSEEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceee--eeeeeeecc----cceeEEccCCCChhhCEEEEEE
Confidence 7899999999999999999999999999999999999999974 445555432 2557999999999999999999
Q ss_pred Eeccccee
Q psy3718 132 IKSQKISS 139 (543)
Q Consensus 132 a~n~~~sv 139 (543)
|.|..|..
T Consensus 75 ~~n~~g~~ 82 (90)
T PF07679_consen 75 ASNSSGEA 82 (90)
T ss_dssp EEETTEEE
T ss_pred EEECCCEE
Confidence 99987774
No 27
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.48 E-value=1.4e-13 Score=103.23 Aligned_cols=77 Identities=19% Similarity=0.379 Sum_probs=65.7
Q ss_pred EEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEe
Q psy3718 54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK 133 (543)
Q Consensus 54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 133 (543)
|...|.++.+..|+++.|.|.+.|.|.|.+.|+|++.++.. ..++.+. + ..|.|.++..+|+|.|+|.|.
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~--~~~~~~~-----~---~~L~i~~~~~~D~G~Y~C~a~ 71 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLAS--ENRIEVE-----A---GDLRITKLSLSDSGMYQCVAE 71 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCC--CCeEEEe-----C---CEEEEeeCCHHHCEEEEEEEE
Confidence 56678999999999999999999999999999999999853 3344432 2 379999999999999999999
Q ss_pred cccceee
Q psy3718 134 SQKISSQ 140 (543)
Q Consensus 134 n~~~sv~ 140 (543)
|..|.+.
T Consensus 72 N~~G~~~ 78 (85)
T cd05728 72 NKHGTIY 78 (85)
T ss_pred CCCCeEE
Confidence 9988853
No 28
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.48 E-value=1.5e-13 Score=99.41 Aligned_cols=68 Identities=21% Similarity=0.368 Sum_probs=55.3
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
+.|.|.+.|.|.|.|.|+|++.+|... ..++.+... ++...+|.|.++..+|+|.|+|.|.|..|++.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~-~~r~~~~~~---~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~ 68 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYN-TDRISLYQD---NSGRVTLLIKNVNKKDAGWYTVSAVNEAGVAT 68 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCC-CCeEEEEEc---CCCcEEEEECCCChhhCEEEEEEEEcCcCeEE
Confidence 579999999999999999999998643 346665422 22235799999999999999999999988864
No 29
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.47 E-value=3.3e-13 Score=103.87 Aligned_cols=86 Identities=31% Similarity=0.482 Sum_probs=67.6
Q ss_pred EEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEee-----ecCCCccE
Q psy3718 54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRT-----ERGDSALF 128 (543)
Q Consensus 54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~-----~~~D~G~Y 128 (543)
|...|.+..+.+|+++.|.|.+.|.|.|++.|+|||..+......++.+ ..++ .|.|.++ ..+|+|.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~----~~~~---~l~i~~v~~~~~~~~D~G~Y 74 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQ----LPNG---SLLITSVVHSKHNKPDEGFY 74 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEE----ccCC---eEEEeeeeccCCCCCcCEEE
Confidence 5677888999999999999999999999999999999986543333332 2233 5777776 58999999
Q ss_pred EEEEecc-cceeeeeeeec
Q psy3718 129 TCEIKSQ-KISSQQMTYEA 146 (543)
Q Consensus 129 ~C~a~n~-~~sv~~~~~~v 146 (543)
+|.|.|. .|.+.+.+..|
T Consensus 75 ~C~a~N~~~G~~~s~~~~l 93 (95)
T cd05722 75 QCVAQNDSLGSIVSRTARL 93 (95)
T ss_pred EEEEECCccCcEEEeeeEE
Confidence 9999999 88876555544
No 30
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.47 E-value=3.3e-13 Score=101.61 Aligned_cols=74 Identities=30% Similarity=0.583 Sum_probs=60.7
Q ss_pred CCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
|+.++|.|.+.|.|++.+.|+|++.++... ..++.+.....+....++|.|.++..+|+|.|+|.|.|..|...
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~-~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~ 74 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPE-MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDR 74 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCC-CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcce
Confidence 789999999999999999999999988643 34666543322344557899999999999999999999988853
No 31
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.47 E-value=1.1e-13 Score=99.86 Aligned_cols=66 Identities=18% Similarity=0.384 Sum_probs=56.1
Q ss_pred CCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
|+++.|.|.+.|.|.|++.|+|++.++. .+.++.+. .+ ++|.|.+++.+|+|.|+|.|.|..|++.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~--~~~r~~~~----~~---g~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 66 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLV--NNSRISIW----DD---GSLEILNITKLDEGSYTCFAENNRGKAN 66 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecc--cCCCEEEc----CC---CEEEECcCChhHCEEEEEEEECCCCcee
Confidence 7899999999999999999999998874 34566553 23 3799999999999999999999988854
No 32
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.47 E-value=5.7e-13 Score=102.84 Aligned_cols=86 Identities=19% Similarity=0.363 Sum_probs=68.1
Q ss_pred CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCC---CCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKS---DNRYTIREEILPNGVLSDLSIKRTERGDSAL 127 (543)
Q Consensus 51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 127 (543)
.|.|...+....+..|+.++|.|.+.|.|.|.+.|++++..+.... ..++.+. .+...+.|.|.+++.+|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~----~~~~~~~L~I~~v~~~D~G~ 77 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVR----SHARVSSLTLKYIQYTDAGE 77 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEE----cCccEEEEEEecCccCcCEE
Confidence 5778777777777779999999999999999999999988774321 2334433 22334689999999999999
Q ss_pred EEEEEecccceee
Q psy3718 128 FTCEIKSQKISSQ 140 (543)
Q Consensus 128 Y~C~a~n~~~sv~ 140 (543)
|+|.|.|..|...
T Consensus 78 Y~C~A~N~~G~~~ 90 (97)
T cd05869 78 YLCTASNTIGQDS 90 (97)
T ss_pred EEEEEecCCCCee
Confidence 9999999988753
No 33
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.46 E-value=4e-13 Score=103.90 Aligned_cols=85 Identities=27% Similarity=0.416 Sum_probs=66.1
Q ss_pred CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccC--CeecCCC---CCCceEEeeeecCCCceeeEEEEeeecCCC
Q psy3718 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRLDPK---SDNRYTIREEILPNGVLSDLSIKRTERGDS 125 (543)
Q Consensus 51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i~~~---~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~ 125 (543)
+|.|.. +.++.+.+|++++|.|.+.|.|.|.+.|+|+ +..+... .+.++.+.. ....+.|.|.+++.+|+
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~----~~~~~~L~I~~v~~~D~ 76 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG----QHGESSLHIKDVKLSDS 76 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEee----cCCeeEEEEeeCCcCCC
Confidence 677754 7889999999999999999999999999984 4444211 234555432 22335799999999999
Q ss_pred ccEEEEEecccceee
Q psy3718 126 ALFTCEIKSQKISSQ 140 (543)
Q Consensus 126 G~Y~C~a~n~~~sv~ 140 (543)
|.|+|.|.|..|+..
T Consensus 77 G~Y~C~A~N~~G~~~ 91 (98)
T cd05870 77 GRYDCEAASRIGGHQ 91 (98)
T ss_pred EEEEEEEeccCCcce
Confidence 999999999988753
No 34
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.46 E-value=4.2e-13 Score=105.50 Aligned_cols=91 Identities=23% Similarity=0.275 Sum_probs=68.2
Q ss_pred EeCCCeEEeecceeEe----ecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeee-c
Q psy3718 48 SSAPPEFEIKLRNQTS----RRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTE-R 122 (543)
Q Consensus 48 v~~~p~~~~~~~~~~v----~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~ 122 (543)
|..+|.|...|....+ ..|.+++|.|.+.|.|.+.+.|+|||.+|... +.++.+..........+.|.|.++. .
T Consensus 1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~-~~r~~~~~~~~~~~~~s~L~I~~v~~~ 79 (109)
T cd05773 1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLG-NPRYEETTEHTGTVHTSILTIINVSAA 79 (109)
T ss_pred CccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCC-CCeEEEEeeccCccceeEEEECcCCcc
Confidence 4568888887763222 35689999999999999999999999998543 3355443222222234689999997 6
Q ss_pred CCCccEEEEEeccccee
Q psy3718 123 GDSALFTCEIKSQKISS 139 (543)
Q Consensus 123 ~D~G~Y~C~a~n~~~sv 139 (543)
+|.|.|+|.|.|..|+.
T Consensus 80 ~D~G~Y~C~A~N~~G~~ 96 (109)
T cd05773 80 LDYALFTCTAHNSLGED 96 (109)
T ss_pred CCCEEEEEEEEeCCccC
Confidence 99999999999998885
No 35
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.46 E-value=3.1e-13 Score=99.24 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=60.5
Q ss_pred EEeecceeEeecCCCeEEEEEeeccCCc-eEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEE
Q psy3718 54 FEIKLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEI 132 (543)
Q Consensus 54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 132 (543)
|...|+++.+.+|+++.|.|.+.|.|.| +|.|+|||.++... . ....+.|.|.++ .|+|.|.|.|
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~----~--------~~~~s~L~i~~~--~d~g~Y~C~A 66 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP----P--------APSPSVLNVPGL--NETSKFSCEA 66 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC----C--------CCCCCEEEEccc--cCCeEEEEEE
Confidence 4567889999999999999999999999 79999999998531 1 111246888887 5889999999
Q ss_pred ecccceeeee
Q psy3718 133 KSQKISSQQM 142 (543)
Q Consensus 133 ~n~~~sv~~~ 142 (543)
+|..|.+...
T Consensus 67 ~N~~G~~~s~ 76 (81)
T cd05749 67 HNAKGVTTSR 76 (81)
T ss_pred EeccCcEEee
Confidence 9998876543
No 36
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.46 E-value=3.1e-13 Score=104.22 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=60.8
Q ss_pred eeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeee-ecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718 60 NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE-ILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS 138 (543)
Q Consensus 60 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s 138 (543)
...+..|+.+.|.|.+.|.|+|++.|+|||.+|.... ..+..... .......+.|.|.++..+|+|.|+|.|.|..|+
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~-~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENL-TEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCc-ceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 5788999999999999999999999999999986322 22211110 001122368999999999999999999999887
Q ss_pred e
Q psy3718 139 S 139 (543)
Q Consensus 139 v 139 (543)
.
T Consensus 91 ~ 91 (101)
T cd05859 91 K 91 (101)
T ss_pred E
Confidence 4
No 37
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.44 E-value=2.8e-13 Score=98.72 Aligned_cols=67 Identities=22% Similarity=0.362 Sum_probs=55.8
Q ss_pred cCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 65 RGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 65 ~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
+|+++.|.|.+.|.|.|.+.|+|++.++... .++.+. .+ +.|.|.+++.+|+|.|+|.|.|..|++.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~--~~~~~~----~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 67 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD--RRHLVL----SS---GTLRISRVALHDQGQYECQAVNIVGSQR 67 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCC--CCeEEc----cC---CeEEEeeCCHHhCEEEEEEEEeCCCcee
Confidence 5899999999999999999999999988542 233321 22 3799999999999999999999988854
No 38
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.44 E-value=4.7e-13 Score=101.26 Aligned_cols=86 Identities=24% Similarity=0.461 Sum_probs=68.2
Q ss_pred CeEEe--ecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718 52 PEFEI--KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT 129 (543)
Q Consensus 52 p~~~~--~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 129 (543)
|.|.. .+.++.+.+|++++|.|.+.|. .|.+.|+|++.++.. .++.+. .++ ..|.|.+++.+|+|.|.
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~---~~~~~~----~~~--~~L~I~~v~~~D~G~Y~ 71 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP---PRLQLS----NDN--RTLTFNNVTRSDTGHYQ 71 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC---CCEEEe----CCC--CEEEECcCChhhCEEEE
Confidence 55643 3567899999999999999999 999999999998742 234332 111 37999999999999999
Q ss_pred EEEecccceeeeeeeecc
Q psy3718 130 CEIKSQKISSQQMTYEAS 147 (543)
Q Consensus 130 C~a~n~~~sv~~~~~~v~ 147 (543)
|.|.|..|++...++.|.
T Consensus 72 C~a~N~~G~~~S~~~~L~ 89 (91)
T cd05740 72 CEASNEVSNMTSDPYILN 89 (91)
T ss_pred EEEEcCCCCEEeeeEEEE
Confidence 999999998776666553
No 39
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.44 E-value=3.7e-13 Score=97.59 Aligned_cols=68 Identities=21% Similarity=0.351 Sum_probs=55.3
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
+.|.|.+.|.|.|.|.|+|++.++.. ...++.+... +.....|.|.++.++|+|.|+|.|.|..|++.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~-~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 68 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTH-NTDRVSMHQD---NCGYICLLIQGATKEDAGWYTVSAKNEAGIVS 68 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCC-CCCeEEEEEc---CCCEEEEEECCCCHHHCEEEEEEEEcCCCEEE
Confidence 57999999999999999999999853 3456665422 22234699999999999999999999999864
No 40
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.44 E-value=4e-13 Score=98.17 Aligned_cols=68 Identities=19% Similarity=0.358 Sum_probs=54.6
Q ss_pred CCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
|+++.|.|.+.|.|.|+|.|+|+|.++.......... .++ ..|.|.+++.+|+|.|+|.|+|..|.+.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~-----~~~--~~l~i~~v~~~D~G~Y~C~A~N~~G~~~ 68 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRK-----VDG--DTIIFSKVQERSSAVYQCNASNEYGYLL 68 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEE-----ecC--CEEEECCCCHhhCEEEEEEEEcCCCEEE
Confidence 7899999999999999999999999985432221111 122 3689999999999999999999998864
No 41
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.43 E-value=1.2e-12 Score=99.19 Aligned_cols=89 Identities=26% Similarity=0.419 Sum_probs=75.1
Q ss_pred CCCeEEeecceeEeecCCCeEEEEEeeccCCc-eEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC-Ccc
Q psy3718 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD-SAL 127 (543)
Q Consensus 50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D-~G~ 127 (543)
.||.| .....+.+.+|+++.|.|.+.+.|+| .|.|.+++..|....+.+|.+.......+..+.|.|.++..+| .|.
T Consensus 1 gpP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 1 GPPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred CCCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcE
Confidence 36776 55677889999999999999887775 6788888888876667899998877788999999999998877 799
Q ss_pred EEEEEeccccee
Q psy3718 128 FTCEIKSQKISS 139 (543)
Q Consensus 128 Y~C~a~n~~~sv 139 (543)
|.|.|.|..|+-
T Consensus 80 Y~C~a~N~~G~d 91 (98)
T cd05898 80 YNCTAWNSFGSG 91 (98)
T ss_pred EEEEEEeCCccc
Confidence 999999998874
No 42
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.43 E-value=1.7e-12 Score=107.67 Aligned_cols=116 Identities=19% Similarity=0.281 Sum_probs=81.1
Q ss_pred eEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCeEEeecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeec
Q psy3718 20 LLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRL 92 (543)
Q Consensus 20 ~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i 92 (543)
+|+|.+ |+|.|.|.+.+..|.. ....|.|..+|.+...+.......|+.++|.|.+.|. |. +.|.|++++...
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~ 81 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD 81 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence 689999 9999999999987775 5579999999999888777666689999999999995 54 599999998652
Q ss_pred CC--CCCCceEE-eeeecCCCc---eeeEEEEeeecCCCccEEEEEecc
Q psy3718 93 DP--KSDNRYTI-REEILPNGV---LSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 93 ~~--~~~~~~~~-~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
.. ........ ......+|. .+.|.|......+.+.|+|.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~ 130 (139)
T cd05771 82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHV 130 (139)
T ss_pred ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcC
Confidence 21 00011110 001112333 245666544444577999999885
No 43
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.43 E-value=8.4e-13 Score=100.35 Aligned_cols=81 Identities=11% Similarity=0.147 Sum_probs=64.2
Q ss_pred EEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEe
Q psy3718 54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK 133 (543)
Q Consensus 54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 133 (543)
++.+|.+..+..|+++.|.|.+.|.|.|.+.|++++..+.. ........ ......|.|.++..+|.|.|+|.|.
T Consensus 3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~--~~~~~~~~----~~~~~~L~I~~v~~~D~g~Y~C~A~ 76 (90)
T cd04972 3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQ--TRTDTLET----TVDIYNLQLSNITSETQTTVTCTAE 76 (90)
T ss_pred cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccC--CccEEEEe----cCCEEEEEEecCCcccCEEEEEEEE
Confidence 34567778899999999999999999999999999998752 22222111 1223589999999999999999999
Q ss_pred cccceee
Q psy3718 134 SQKISSQ 140 (543)
Q Consensus 134 n~~~sv~ 140 (543)
|..|+..
T Consensus 77 N~~G~~~ 83 (90)
T cd04972 77 NPVGQAN 83 (90)
T ss_pred CCCCcee
Confidence 9988753
No 44
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.43 E-value=6e-13 Score=102.51 Aligned_cols=82 Identities=22% Similarity=0.509 Sum_probs=65.6
Q ss_pred CCeEEeec--ceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccE
Q psy3718 51 PPEFEIKL--RNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALF 128 (543)
Q Consensus 51 ~p~~~~~~--~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 128 (543)
||.|...+ .+..+..|+++.|.|.+.|.|.|.+.|+++|.++... ..++.+. .++ +.|.|.++..+|+|.|
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~-~~~~~~~----~~~--~~L~I~~v~~~D~G~Y 73 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESG-EEKYSFN----EDG--SEMTILDVDKLDEAEY 73 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC-CCEEEEe----CCC--CEEEECCCChhhCEEE
Confidence 56666544 4568899999999999999999999999999998643 2344332 122 4799999999999999
Q ss_pred EEEEeccccee
Q psy3718 129 TCEIKSQKISS 139 (543)
Q Consensus 129 ~C~a~n~~~sv 139 (543)
+|.|.|..|..
T Consensus 74 ~C~a~N~~G~~ 84 (95)
T cd05730 74 TCIAENKAGEQ 84 (95)
T ss_pred EEEEEcCCCeE
Confidence 99999998874
No 45
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.43 E-value=6.2e-13 Score=100.71 Aligned_cols=79 Identities=18% Similarity=0.316 Sum_probs=65.5
Q ss_pred CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC 130 (543)
Q Consensus 51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 130 (543)
||.+...|.+..+.+|+++.|.|.+.|.|.|++.|+|++..+... ..+.. .+ +.|.|.+++.+|+|.|+|
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~--~~~~~-----~~---~~L~i~~v~~~D~G~Y~C 70 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS--AEISM-----SG---AVLKIPNIQFEDEGTYEC 70 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc--cEEEE-----eC---CEEEECCCCcccCEEEEE
Confidence 567778899999999999999999999999999999988766432 12211 12 479999999999999999
Q ss_pred EEeccccee
Q psy3718 131 EIKSQKISS 139 (543)
Q Consensus 131 ~a~n~~~sv 139 (543)
.|.|..|..
T Consensus 71 ~a~N~~G~~ 79 (88)
T cd04968 71 EAENIKGKD 79 (88)
T ss_pred EEEECCCcE
Confidence 999998874
No 46
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.42 E-value=1e-12 Score=99.35 Aligned_cols=80 Identities=18% Similarity=0.368 Sum_probs=64.5
Q ss_pred ecceeEeecCCCeEEEEEe-eccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718 57 KLRNQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 57 ~~~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
.|.+..+.+|+++.|.|.+ .|.|.|.+.|+|++.++... ..++.+. .+ +.|.|.++..+|+|.|+|.|.|.
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~-~~~~~~~----~~---~~L~I~~~~~~D~G~Y~C~a~N~ 73 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD-NERVRIV----DD---GNLLIAEARKSDEGTYKCVATNM 73 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC-CCCEEEc----cC---CEEEEeECCcccCEEEEEEEEec
Confidence 4678889999999999998 78999999999999998653 3344432 12 37999999999999999999999
Q ss_pred cceeeeeee
Q psy3718 136 KISSQQMTY 144 (543)
Q Consensus 136 ~~sv~~~~~ 144 (543)
.|.......
T Consensus 74 ~G~~~s~~~ 82 (86)
T cd05724 74 VGERESAAA 82 (86)
T ss_pred cCceeeeeE
Confidence 887544433
No 47
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.42 E-value=1.4e-12 Score=100.85 Aligned_cols=85 Identities=27% Similarity=0.452 Sum_probs=67.4
Q ss_pred CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCC---CCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKS---DNRYTIREEILPNGVLSDLSIKRTERGDSAL 127 (543)
Q Consensus 51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 127 (543)
+|.|. .+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+.... +.++.+. .+...+.|.|.+++.+|+|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~ 76 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVR----GHARVSSLTLKDVQLTDAGR 76 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEe----CCccEEEEEECcCCcCcCEE
Confidence 57775 5678899999999999999999999999999987664321 2234432 23344689999999999999
Q ss_pred EEEEEecccceee
Q psy3718 128 FTCEIKSQKISSQ 140 (543)
Q Consensus 128 Y~C~a~n~~~sv~ 140 (543)
|+|.|.|..|...
T Consensus 77 Y~C~a~N~~G~~~ 89 (96)
T cd05732 77 YDCEASNRIGGDQ 89 (96)
T ss_pred eEEEEEeCCCCcE
Confidence 9999999988753
No 48
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.41 E-value=8.9e-13 Score=96.60 Aligned_cols=67 Identities=21% Similarity=0.498 Sum_probs=55.5
Q ss_pred CCCeEEEEEeeccCCceEEEccCCeecCCCCCC-ceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDN-RYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
|++++|.|.+.|.|.|++.|+|+|.++...... ++.+. + +.|.|.+++.+|+|.|+|.|.|..|++.
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~-----~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 68 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVS-----S---GALILTDVQPSDTAVYQCEARNRHGNLL 68 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEee-----C---CEEEECCCChhhCEEEEEEEECCCCeEE
Confidence 789999999999999999999999988643322 33321 2 3799999999999999999999988864
No 49
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.41 E-value=4.7e-13 Score=93.93 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=48.9
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
+.|.|.+.|.|.|.+.|+|||++|... ...+.|.|.++..+|+|.|+|.|+|..|..
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~ 57 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------------HSQHSLQIKDVTEASAGTYTLVLWNSAAGL 57 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------------CCcCEEEECCCCHHHCEEEEEEEEECCccE
Confidence 479999999999999999999998521 112479999999999999999999998864
No 50
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.41 E-value=1.8e-12 Score=98.80 Aligned_cols=82 Identities=23% Similarity=0.418 Sum_probs=65.0
Q ss_pred CeEEeecceeEeecC---CCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeee-cCCCcc
Q psy3718 52 PEFEIKLRNQTSRRG---EPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTE-RGDSAL 127 (543)
Q Consensus 52 p~~~~~~~~~~v~~g---~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~ 127 (543)
|.|...|.++.+..+ +++.|.|.+.|+|.|++.|+|++..+......++.+. + ..|.|.++. .+|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~-----~---~~L~i~~~~~~~d~G~ 73 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV-----G---GNLVISNPSKAKDAGR 73 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE-----C---CEEEEecCCccCCCEE
Confidence 778888888766544 5799999999999999999999998854444444432 2 369999876 599999
Q ss_pred EEEEEecccceeee
Q psy3718 128 FTCEIKSQKISSQQ 141 (543)
Q Consensus 128 Y~C~a~n~~~sv~~ 141 (543)
|+|.|+|..|++.+
T Consensus 74 Y~C~a~N~~G~~~S 87 (91)
T cd04967 74 YQCLASNIVGTVLS 87 (91)
T ss_pred EEEEEEcCCCEEEe
Confidence 99999999887543
No 51
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.41 E-value=5.9e-13 Score=96.85 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=54.4
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceeee
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQ 141 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~~ 141 (543)
++|.|.+.|.|.|++.|+|++.++....+.++.+. .+ +.|.|.+++.+|+|.|+|.|.|..|....
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~----~~---g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s 66 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL----RS---GALQIENSEESDQGKYECVATNSAGTRYS 66 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc----CC---cEEEECCCChhhCEEEEEEEECCCCceEc
Confidence 57999999999999999999998865455566542 22 36999999999999999999999887543
No 52
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.41 E-value=1.9e-12 Score=98.51 Aligned_cols=86 Identities=21% Similarity=0.371 Sum_probs=65.0
Q ss_pred EEeecceeEeecCCCeEEEEEeeccCCceEEEcc-CCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEE
Q psy3718 54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM-NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEI 132 (543)
Q Consensus 54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 132 (543)
+.+.|.+..+..|+++.|.|.+.|.|. .+.|++ ++..+.. ..++.+.. ..+..+.|+|.+++.+|+|.|+|.|
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~--~~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~A 76 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVT--QQQISVVQ---NDDVRSTLTIYNANIEDAGIYKCVA 76 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEecc--CCCEEEEe---CCCCEEEEEEecCCcccCEEEEEEE
Confidence 456788899999999999999999975 999997 6666643 22333321 2345578999999999999999999
Q ss_pred ecccceeeeeeee
Q psy3718 133 KSQKISSQQMTYE 145 (543)
Q Consensus 133 ~n~~~sv~~~~~~ 145 (543)
.|..|...+....
T Consensus 77 ~N~~g~~~~~sv~ 89 (92)
T cd04977 77 TDAKGTESEATVN 89 (92)
T ss_pred EcCCCCcceeEEE
Confidence 9986654444443
No 53
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.38 E-value=1.9e-12 Score=93.32 Aligned_cols=64 Identities=17% Similarity=0.418 Sum_probs=52.6
Q ss_pred CeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 68 PSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 68 ~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
++.|.|.+.|.|.|++.|+|++.++... .++.+.. + ..|.|.+++.+|+|.|+|.|.|..|+++
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~--~~~~~~~----~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~~ 64 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPS--DYFKIVK----E---HNLQVLGLVKSDEGFYQCIAENDVGNVQ 64 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCC--CCEEEEe----c---CCEEEEcCCcccCEEEEEEEEcCCCEEE
Confidence 4789999999999999999999988543 3444321 2 2589999999999999999999988864
No 54
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.38 E-value=2.1e-12 Score=94.05 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=54.3
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
++|.|.+.|.|.|++.|+|++.++.. +..++.+... ......|.|.+++.+|+|.|+|.|.|..|++.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~-~~~r~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 68 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTY-NTDRISLYQD---NCGRICLLIQNANKEDAGWYTVSAVNEAGVVS 68 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCC-CCCcEEEEEc---CCCeEEEEECCCCcccCEEEEEEEEcCCCcEE
Confidence 57999999999999999999999854 3345554321 12234799999999999999999999988853
No 55
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.37 E-value=2.1e-12 Score=98.23 Aligned_cols=78 Identities=19% Similarity=0.348 Sum_probs=63.2
Q ss_pred ecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718 57 KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK 136 (543)
Q Consensus 57 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 136 (543)
.|..+.+.+|+.+.|.|.+.|.|.|.+.|+|++..+... .++.+.. ..+..+.|.|.++..+|+|.|+|.|.|..
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~--~~~~~~~---~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 81 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS--EHYSVKL---EQGKYASLTIKGVTSEDSGKYSINVKNKY 81 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC--CCEEEEE---cCCCEEEEEECCCChhhCEEEEEEEEeCC
Confidence 366788999999999999999999999999999988643 3343321 12333579999999999999999999988
Q ss_pred cee
Q psy3718 137 ISS 139 (543)
Q Consensus 137 ~sv 139 (543)
|..
T Consensus 82 G~~ 84 (92)
T cd05891 82 GGE 84 (92)
T ss_pred Cce
Confidence 774
No 56
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.37 E-value=1.9e-12 Score=95.28 Aligned_cols=69 Identities=25% Similarity=0.407 Sum_probs=56.6
Q ss_pred CCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
|+++.|.|.+.|.|.|.+.|++++..+. ...++.+.. .+..+.|.|.++..+|+|.|+|.|.|..|.+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~--~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 69 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVP--DSARVSITS----EGGYGTLTIRDVKESDQGAYTCEAINTRGMVF 69 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECC--CCCCEEEEE----CCCEEEEEECCCChHHCEEEEEEEEecCCEEE
Confidence 7899999999999999999999998875 233454432 23346899999999999999999999988754
No 57
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.36 E-value=2.5e-12 Score=94.26 Aligned_cols=72 Identities=18% Similarity=0.332 Sum_probs=55.2
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee-eeeeecc
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ-QMTYEAS 147 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~-~~~~~v~ 147 (543)
++|.|.+.|.|.|++.|+|+|.++... ..++.+.. . .+.|.|.++.++|+|.|.|.|.|..|++. ...+.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~-~~~~~~~~----~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~ 73 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDG-QGNYSVSS----K--ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS 73 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCC-CccEEEeC----C--CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence 579999999999999999999998543 23444321 1 14799999999999999999999988753 2344443
No 58
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.36 E-value=2.5e-12 Score=94.33 Aligned_cols=69 Identities=25% Similarity=0.460 Sum_probs=53.9
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeec----CCCccEEEEEecccceeeeee
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTER----GDSALFTCEIKSQKISSQQMT 143 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~a~n~~~sv~~~~ 143 (543)
++|.|.+.|.|.|++.|+||+.++......++.+.. .+ +.|.|.++.. +|+|.|+|.|+|..|++.+..
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~---~~---g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~ 73 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKP---DS---GTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNE 73 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeC---CC---CEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccc
Confidence 579999999999999999999998655555554431 12 4789998754 789999999999988864433
No 59
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.36 E-value=2.7e-12 Score=93.07 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=51.2
Q ss_pred EEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 71 LQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 71 l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
|.|.+.|.|.|+|+|+|||.+|.........+... ......+.|.|.++..+|+|.|+|+|+|..|++
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~ 70 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVI-NNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED 70 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEee-cccceEEEEEECCCCcccCEEEEEEEEcCCccc
Confidence 78999999999999999999996432211121111 011234689999999999999999999998875
No 60
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.36 E-value=2.3e-12 Score=95.01 Aligned_cols=71 Identities=24% Similarity=0.435 Sum_probs=58.5
Q ss_pred cceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccc
Q psy3718 58 LRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKI 137 (543)
Q Consensus 58 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 137 (543)
|+...+.+|+.+.|.|.+.+. .+.+.|+|||.+|.. +.++.+.. ..|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~--~~~~~~~~--------~~L~I~~~~~~DsG~Y~C~a~n~~g 69 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGE--NNRTRITG--------EEVQIKDAVPRDSGLYACVTSSPSG 69 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCC--CceEEEeC--------CEEEECCCChhhCEEEEEEEeCCCC
Confidence 567788999999999999997 568999999999864 33454431 2699999999999999999999866
Q ss_pred ee
Q psy3718 138 SS 139 (543)
Q Consensus 138 sv 139 (543)
+.
T Consensus 70 ~~ 71 (79)
T cd04973 70 SD 71 (79)
T ss_pred cc
Confidence 63
No 61
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.35 E-value=2.9e-12 Score=94.18 Aligned_cols=68 Identities=22% Similarity=0.407 Sum_probs=54.7
Q ss_pred CCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
|++++|.|.+.|.|.|++.|+++|.++...... .... ..+ ..|.|.+++.+|+|.|+|.|.|..|++.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~---~~~---~~L~i~~v~~~D~G~Y~C~A~N~~G~~~ 68 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRR---VDG---GTLILSNVQPNDTAVYQCNASNVHGYLL 68 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEE---ccC---CEEEECCCChhhCEEEEEEEEccCCeEE
Confidence 789999999999999999999999988643322 1111 112 4799999999999999999999988853
No 62
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.35 E-value=5.1e-12 Score=92.15 Aligned_cols=66 Identities=24% Similarity=0.351 Sum_probs=54.2
Q ss_pred CeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 68 PSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 68 ~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
.+.|.|.+.|.|.|++.|+|+|.++.. +.++.+.. ....+.|.|.++..+|+|.|+|.|.|..|+.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~--~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 66 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKL--SGRVQIET----TASSTSLVIKNAERSDSGKYTLTLKNPAGEK 66 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCC--CCeEEEEE----CCCeEEEEECCCCcCcCEEEEEEEECCCccE
Confidence 478999999999999999999999843 34454432 2234689999999999999999999998874
No 63
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.34 E-value=4.2e-12 Score=93.53 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=53.4
Q ss_pred EEEEEeeccCCceEEEccCCeecCCCCCCceEEeeee-cCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 70 VLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI-LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 70 ~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
-|.|.+.|.|.|++.|+|||++|......+..+.... ......+.|.|.++..+|+|.|+|.|+|..|++.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~ 73 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDS 73 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCee
Confidence 3789999999999999999999975442222222110 0123346899999999999999999999988853
No 64
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.34 E-value=5.2e-12 Score=95.10 Aligned_cols=74 Identities=18% Similarity=0.313 Sum_probs=59.2
Q ss_pred eEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCC-ceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 61 QTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDN-RYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 61 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
+.+.+|+++.|.|.+.|.|.|.+.|+|+|.++...... .+.+. .....|.|.++.++|+|.|+|.|.|..|++
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~------~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVR------NQHWSLIMESVVPSDKGNYTCVVENEYGSI 77 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEe------CCceEEEEccCCcccCEEEEEEEEeCCCEE
Confidence 56789999999999999999999999999998643221 11211 112479999999999999999999999986
Q ss_pred e
Q psy3718 140 Q 140 (543)
Q Consensus 140 ~ 140 (543)
.
T Consensus 78 ~ 78 (85)
T cd05857 78 N 78 (85)
T ss_pred E
Confidence 4
No 65
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.33 E-value=6e-12 Score=91.98 Aligned_cols=70 Identities=20% Similarity=0.339 Sum_probs=54.0
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeee---c-CCCccEEEEEecccceeeeeee
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTE---R-GDSALFTCEIKSQKISSQQMTY 144 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~---~-~D~G~Y~C~a~n~~~sv~~~~~ 144 (543)
+.|.|.+.|.|.|++.|+|++.++....+.++.+.. .+ +.|.|.++. + +|+|.|+|.|+|..|.+.....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~---~~---~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~ 74 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR---RS---GTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKI 74 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeC---CC---ceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEE
Confidence 479999999999999999999987655555665431 12 479998764 2 4699999999999998765444
No 66
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.33 E-value=7e-12 Score=93.62 Aligned_cols=71 Identities=21% Similarity=0.439 Sum_probs=54.2
Q ss_pred CCeEEEEEeeccCCc--eEEEccCCeecCCCC-CCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 67 EPSVLQCEAKGEKPI--GILWNMNNKRLDPKS-DNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 67 ~~~~l~C~~~g~p~~--~i~W~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
++++|.|.+.|+|.| .+.|++|+.++.... +.++.... . ....++|.|.+++.+|+|.|+|.|.|..|++.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~-~--~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~ 74 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRME-V--KETIGDLVIVNAQLSHAGTYTCTAQTVVDSAS 74 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEE-e--cceEeEEEEccCChhhCeEEEEEEecCCCCEE
Confidence 478999999999986 689999999985432 33332211 1 12235899999999999999999999988864
No 67
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.33 E-value=2.2e-12 Score=92.41 Aligned_cols=62 Identities=18% Similarity=0.409 Sum_probs=51.7
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
+.|.|.+.|.|.|.+.|+|++.++.. ..++.+.. + +.|.|.++..+|+|.|+|.|.|..|..
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~--~~~~~~~~----~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 62 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTE--SGKFHISP----E---GYLAIRDVGVADQGRYECVARNTIGYA 62 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCC--CCCEEECC----C---CEEEECcCChhhCEEEEEEEECCCCcE
Confidence 57999999999999999999998853 34454421 2 379999999999999999999998874
No 68
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.32 E-value=3.1e-12 Score=91.03 Aligned_cols=61 Identities=15% Similarity=0.275 Sum_probs=50.1
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
+.|.|.+.|.|.|.+.|+|||.++... .++. .+ +.|.|.++..+|+|.|+|.|.|..|+.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~--~~~~-------~~--~~L~I~~v~~~D~G~YtC~a~N~~G~~~ 61 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLN--HTFK-------RG--VHLTIYEVTEKDAGNYTVVLTNPITKEE 61 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC--CEEc-------cC--CEEEECcCCHHHCEEEEEEEEECCCcee
Confidence 479999999999999999999998532 2221 11 3699999999999999999999988653
No 69
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.32 E-value=4.7e-12 Score=91.97 Aligned_cols=66 Identities=21% Similarity=0.409 Sum_probs=55.1
Q ss_pred CCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
|+.+.|.|.+.|.|.|++.|+|++..+.. ..++.+. .+ ..|.|.+++.+|+|.|+|.|.|..|+..
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~--~~~~~~~----~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 66 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTN--SSRICIW----PD---GSLEILNVTKSDEGKYTCFAENFFGKAN 66 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEccc--CCCEEEC----CC---CeEEEccCChhHCEEEEEEEECCCCceE
Confidence 78899999999999999999999998853 3344432 22 3699999999999999999999988753
No 70
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.32 E-value=6.7e-12 Score=92.47 Aligned_cols=71 Identities=17% Similarity=0.355 Sum_probs=53.8
Q ss_pred CCeEEEEEeeccC--CceEEEccCCeecCCC-CCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 67 EPSVLQCEAKGEK--PIGILWNMNNKRLDPK-SDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 67 ~~~~l~C~~~g~p--~~~i~W~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
+++.|.|.+.++| .+.+.|+|||++|... +..+|.+... ....++|.|.+++.+|+|.|+|.|+|..+++.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~---~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~ 74 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGG---QDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLS 74 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEecc---CCCCCcEEEecCCHHHCEEEEEEEEcccCceE
Confidence 4689999998855 7899999999999653 3334443211 01224799999999999999999999977753
No 71
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.31 E-value=6.9e-12 Score=89.37 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=50.2
Q ss_pred CCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
|++++|.|.+.|.|.|.|.|+|++.++... .++.+ . ...|.|.++ +|+|.|+|.|.|..|++.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~--~~~~~-----~---~~~L~i~~~--~d~G~Y~C~A~N~~G~~~ 63 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKE--DEMPV-----G---RNVLELTNI--YESANYTCVAISSLGMIE 63 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCc--cceec-----C---ccEEEEecc--ccCeeEEEEEEeCCCEEE
Confidence 788999999999999999999999987532 22221 1 136889886 489999999999988754
No 72
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.30 E-value=4.6e-12 Score=91.07 Aligned_cols=61 Identities=26% Similarity=0.378 Sum_probs=50.4
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
+.|.|.+.|.|.|.+.|+|||.++... .++.. .+ +.|.|.++..+|+|.|+|.|.|..|..
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~--~~~~~------~~--~~L~I~~v~~~D~G~YtC~a~N~~g~~ 61 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEK--NRTKK------SG--HSLTIKDVTEEDAGNYTVVLTNKQAKL 61 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC--CEEEc------CC--CEEEECcCCHHHCEEEEEEEEcCCccE
Confidence 479999999999999999999998643 33321 11 479999999999999999999988764
No 73
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.30 E-value=9.7e-12 Score=94.30 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=53.3
Q ss_pred CCCeEEEEEeeccCCceEEEccCC----eecCCCCCCceEEeee---ecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718 66 GEPSVLQCEAKGEKPIGILWNMNN----KRLDPKSDNRYTIREE---ILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS 138 (543)
Q Consensus 66 g~~~~l~C~~~g~p~~~i~W~~~~----~~i~~~~~~~~~~~~~---~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s 138 (543)
|+.++|.|.+.|.|.|+|.|+|++ ..+.........+... ....+....|.|.+++.+|+|.|+|.|.|..|+
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 789999999999999999999963 3443222222222111 011123357999999999999999999999887
Q ss_pred ee
Q psy3718 139 SQ 140 (543)
Q Consensus 139 v~ 140 (543)
+.
T Consensus 81 ~~ 82 (90)
T cd04974 81 SH 82 (90)
T ss_pred cc
Confidence 53
No 74
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.30 E-value=1.1e-11 Score=90.52 Aligned_cols=70 Identities=23% Similarity=0.455 Sum_probs=52.5
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeec----CCCccEEEEEecccceeeeeee
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTER----GDSALFTCEIKSQKISSQQMTY 144 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~a~n~~~sv~~~~~ 144 (543)
+.|.|.+.|.|.|++.|+|++.++......++.+. ..+ ++|.|..+.. .|.|.|+|.|+|..|.+....+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~---~~~---g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~ 74 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMK---PNT---GTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNI 74 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEe---CCC---ceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEE
Confidence 47999999999999999999998854444444432 112 3688887764 3789999999999888654433
No 75
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.30 E-value=9.8e-12 Score=90.89 Aligned_cols=65 Identities=20% Similarity=0.388 Sum_probs=50.3
Q ss_pred eEEEEEeeccCCceEEEccCCeecCC-CCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDP-KSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
++|.|.+.|.|.|++.|+|++....+ ....++.+. ..+ +.|.|.+++.+|+|.|+|.|.|..|++
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~----~~~--~~L~I~~~~~~D~G~Y~C~A~N~~G~~ 66 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM----PED--DVFFIVDVKIEDTGVYSCTAQNTAGSI 66 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEe----cCC--CEEEEeeCCcccCEEEEEEEEcCCCEE
Confidence 57999999999999999999865322 223344432 122 379999999999999999999998875
No 76
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.27 E-value=1.5e-11 Score=89.81 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=57.5
Q ss_pred CeEEeecceeEeecCCCeEEEEEeeccCC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718 52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC 130 (543)
Q Consensus 52 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 130 (543)
|+++..|+...+.+|++++|.|.+.+.|. ..+.|+||+..+.. . ...|.|.++ .+|+|.|+|
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-~---------------~~~l~i~~~-~~dsG~Y~C 63 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-T---------------TNSYRIRAA-NNDSGEYRC 63 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-c---------------CCeEEEeec-ccCCEEeEE
Confidence 67888899999999999999999999876 57999999988731 1 136899999 999999999
Q ss_pred EEecc
Q psy3718 131 EIKSQ 135 (543)
Q Consensus 131 ~a~n~ 135 (543)
.|.|.
T Consensus 64 ~a~~~ 68 (78)
T cd05752 64 QTQGS 68 (78)
T ss_pred ECCCC
Confidence 99985
No 77
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.27 E-value=1.4e-11 Score=91.15 Aligned_cols=69 Identities=23% Similarity=0.487 Sum_probs=57.1
Q ss_pred ecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718 57 KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 57 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
.|++..+..|+++.|.|.+.+ +.+++.|++||.+|..+. .++.+. + ..|.|.+++.+|+|.|+|.|.+.
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~-~r~~~~-----~---~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPES-AKYLLY-----R---DGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCC-ceEEEE-----C---CcEEEeCCCHHHCEEEEEEEEec
Confidence 477889999999999999864 678999999999997542 445432 2 25999999999999999999985
No 78
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.27 E-value=1.5e-11 Score=93.46 Aligned_cols=74 Identities=15% Similarity=0.216 Sum_probs=53.2
Q ss_pred CCCeEEEEEeeccCCceEEEccC----CeecCCCCCCceEEeee---ecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718 66 GEPSVLQCEAKGEKPIGILWNMN----NKRLDPKSDNRYTIREE---ILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS 138 (543)
Q Consensus 66 g~~~~l~C~~~g~p~~~i~W~~~----~~~i~~~~~~~~~~~~~---~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s 138 (543)
|++++|.|.+.|.|.|.+.|+|+ +.++.........+... .......+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78999999999999999999984 45554332222222110 011122368999999999999999999999887
Q ss_pred e
Q psy3718 139 S 139 (543)
Q Consensus 139 v 139 (543)
.
T Consensus 81 ~ 81 (90)
T cd05858 81 S 81 (90)
T ss_pred c
Confidence 4
No 79
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.26 E-value=8.3e-12 Score=89.94 Aligned_cols=63 Identities=22% Similarity=0.384 Sum_probs=50.2
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
+.|.|.+.|.|.|.+.|+|++.++... +.... .. ...|.|.+++.+|+|.|+|.|.|..|...
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~---~~~~~----~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 63 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPN---RTKKL----NN--NKTLQLDNVLESDDGEYVCTAENSEGSAR 63 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCC---ceeEE----cC--CCEEEEcccCHHhCEEEEEEEEcCCCeEE
Confidence 479999999999999999999877432 12211 11 24799999999999999999999988753
No 80
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.26 E-value=7.2e-12 Score=89.26 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=48.0
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK 136 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 136 (543)
+.|.|.+.|.|.|++.|+||+.++.. ...++.. ++ .+|.|.++..+|+|.|+|.|+|..
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~-~~~~~~~------~~--~~L~I~~v~~~D~G~YtC~a~~~~ 59 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAE-KCSRYHV------DG--YSLVIKDVTEEDAGIYTILLGIKQ 59 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCC-CCcEEEe------CC--CEEEECcCCHHHCEEEEEEEEccc
Confidence 47999999999999999999999853 2233332 12 379999999999999999999963
No 81
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.25 E-value=2e-11 Score=91.32 Aligned_cols=71 Identities=25% Similarity=0.354 Sum_probs=57.0
Q ss_pred eEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 61 QTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 61 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
+....|+++.|.|.+.|.|.|.+.|+|++..+...... .. ......|.|.++..+|+|.|+|.|.|..|++
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~--~~------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 74 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIG--ES------RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEI 74 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccc--ee------cCceEEEEEccCChhhCEEEEEEEEcCCccE
Confidence 44667999999999999999999999999887543221 11 1122579999999999999999999998874
No 82
>KOG4258|consensus
Probab=99.25 E-value=3.9e-10 Score=112.33 Aligned_cols=139 Identities=24% Similarity=0.387 Sum_probs=97.4
Q ss_pred eeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCC-------------CCCceEEEEeee---ccCCceeEEEEC
Q psy3718 254 HIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETST-------------DKPFLFETVDFS---KEEGKEHHLTLS 317 (543)
Q Consensus 254 ~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~-------------~~~~~~~~~~~~---~~~~~~~~~~i~ 317 (543)
++.....+.+++.++|..-...+ .....+|.+.|+.... ..+|....+... ........+.+.
T Consensus 493 ~~~~~~~~~dsi~lrW~~~~~~d-~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~ 571 (1025)
T KOG4258|consen 493 QFSSTVTSADSILLRWERYQPPD-MRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLD 571 (1025)
T ss_pred eeeeEEeecceeEEEecccCCcc-hhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehh
Confidence 34445567889999999865432 4567899999976431 123333333221 111234467899
Q ss_pred CCCCCCEEEEEEEEEeCC--CCC--CCCcceeeeccCCCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEE
Q psy3718 318 SLKTYTQYSVVVQALNKL--GPG--PMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393 (543)
Q Consensus 318 ~L~p~t~Y~~~V~a~n~~--G~s--~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~ 393 (543)
+|+|.|.|.+.|.+.... +.. ..|...-++|....|+ ||..+-....++..+.|.|.+|. .++|.++.|.|.|
T Consensus 572 ~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Ps-pPl~~ls~snsSsqi~l~W~pP~--~pNG~lt~Ylv~w 648 (1025)
T KOG4258|consen 572 GLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPS-PPLDVLSKSNSSSQILLKWKPPS--QPNGNLTHYLVVW 648 (1025)
T ss_pred cCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCC-CcchhhhccCcchheeEEecCCC--CCCCceeEEEEEE
Confidence 999999999999998332 222 3567778999999997 77766666666778999999884 6799999999999
Q ss_pred EeC
Q psy3718 394 GPS 396 (543)
Q Consensus 394 ~~~ 396 (543)
...
T Consensus 649 er~ 651 (1025)
T KOG4258|consen 649 ERQ 651 (1025)
T ss_pred Eec
Confidence 874
No 83
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.25 E-value=2.3e-11 Score=92.28 Aligned_cols=83 Identities=19% Similarity=0.399 Sum_probs=62.7
Q ss_pred ecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCC--CCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEec
Q psy3718 57 KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKS--DNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKS 134 (543)
Q Consensus 57 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n 134 (543)
+|..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+.... ..++... . ..|.|.+++.+|+|.|.|.|.+
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~-----~---~~L~I~~~~~~D~G~Y~C~a~~ 72 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT-----E---DGLLIRSVSPADAGVYTCQSVE 72 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc-----C---CCEEEccCCHHHCEEEEEEEec
Confidence 356788999999999999987 888999999998875433 1233322 1 2599999999999999999998
Q ss_pred ccceeeeeeeeccc
Q psy3718 135 QKISSQQMTYEASG 148 (543)
Q Consensus 135 ~~~sv~~~~~~v~~ 148 (543)
..+......+.|.+
T Consensus 73 ~~~~~~~~~~~l~V 86 (89)
T cd04979 73 HGFKQTLATYSLNV 86 (89)
T ss_pred CccceeEeEEEEEE
Confidence 75554555555543
No 84
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.25 E-value=1.7e-11 Score=93.17 Aligned_cols=76 Identities=17% Similarity=0.350 Sum_probs=58.2
Q ss_pred ceeEeecCCCeEEEEEeec-----cCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEe
Q psy3718 59 RNQTSRRGEPSVLQCEAKG-----EKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK 133 (543)
Q Consensus 59 ~~~~v~~g~~~~l~C~~~g-----~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 133 (543)
.+..+.+|+++.|.|.+.| .|.+.|.|+|++.++......+.++.. .+ ..|.|.++..+|+|.|+|.++
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~----~~--~~L~I~~~~~~DsG~Y~C~~~ 80 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ----QK--DLLWFLPAALEDSGLYTCVVR 80 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee----cC--CeEEEccCCcccCeEEEEEEc
Confidence 4677889999999999999 688999999999775322211222211 11 479999999999999999999
Q ss_pred cccceee
Q psy3718 134 SQKISSQ 140 (543)
Q Consensus 134 n~~~sv~ 140 (543)
|..|.++
T Consensus 81 N~~g~~~ 87 (94)
T cd05756 81 NSTYCMK 87 (94)
T ss_pred CCCccEE
Confidence 9877753
No 85
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.24 E-value=1.8e-11 Score=92.97 Aligned_cols=68 Identities=25% Similarity=0.491 Sum_probs=53.7
Q ss_pred CCCeEEEEEeeccCCceEEEccCCeecCC------CCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 66 GEPSVLQCEAKGEKPIGILWNMNNKRLDP------KSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
|++++|.|.+.|.|.|.+.|+|++..+.. ....++.+. .+ +.|.|.+++.+|+|.|+|.|.|..|++
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~----~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 73 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS----QT---GDLTITNVQRSDVGYYICQTLNVAGSI 73 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC----CC---CeEEEeeCChhhCEEEEEEEEcCCCce
Confidence 78999999999999999999998865311 123344442 22 369999999999999999999998885
Q ss_pred e
Q psy3718 140 Q 140 (543)
Q Consensus 140 ~ 140 (543)
.
T Consensus 74 ~ 74 (90)
T cd05726 74 L 74 (90)
T ss_pred E
Confidence 4
No 86
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.24 E-value=2.1e-11 Score=87.47 Aligned_cols=62 Identities=26% Similarity=0.475 Sum_probs=50.3
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
++|.|.+.|.|.|.+.|+|++..+.. .++.+. .+ ..|.|.+++.+|+|.|+|.|.|..|...
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~---~~~~~~----~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 62 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK---GRAEIL----DD---KSLKIRNVTAGDEGSYTCEAENMVGKIE 62 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC---CcEEEe----eC---CEEEECcCChhHCEEEEEEEEcCCCcEE
Confidence 57999999999999999999877632 244432 12 3799999999999999999999988753
No 87
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.23 E-value=4.1e-11 Score=89.97 Aligned_cols=70 Identities=23% Similarity=0.383 Sum_probs=52.4
Q ss_pred CCeEEEEEeeccCCc--eEEEccCCeecCCCCC-CceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 67 EPSVLQCEAKGEKPI--GILWNMNNKRLDPKSD-NRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 67 ~~~~l~C~~~g~p~~--~i~W~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
+++.|.|.+.|.|.| ++.|+|+|.++..... .++..... ....++|.|.+++.+|+|.|+|.|.|..|+.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 73 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGG---KDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL 73 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEec---ccccceEEEccCCHHhCeeeEEEEecCCCcE
Confidence 478999999999977 6799999999864322 22221111 1122589999999999999999999987774
No 88
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.22 E-value=4.4e-11 Score=87.23 Aligned_cols=65 Identities=26% Similarity=0.453 Sum_probs=51.9
Q ss_pred CCCeEEEEEeeccCCceEEEcc-CCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 66 GEPSVLQCEAKGEKPIGILWNM-NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 66 g~~~~l~C~~~g~p~~~i~W~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
|+.+.|.|.+.|.|.|.+.|++ ++..+. ...++.+. .+ +.|.|.++..+|+|.|+|.|.|..|..
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~--~~~~~~~~----~~---~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 66 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLIS--NSSRTLVY----DN---GTLDILITTVKDTGSFTCIASNAAGEA 66 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEec--CCCeEEEe----cC---CEEEEEECChhhCEEEEEEEECCCCeE
Confidence 7899999999999999999997 666654 22333321 22 369999999999999999999998874
No 89
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.21 E-value=3.4e-11 Score=88.96 Aligned_cols=67 Identities=25% Similarity=0.465 Sum_probs=49.6
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCC------CCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceeeee
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPK------SDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQM 142 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~~~ 142 (543)
++|.|.+.|.|.|.+.|+|++....+. .+.++.+. .+ ++|.|.++..+|+|.|+|.|.|..|.....
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~----~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~ 73 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL----SN---GSLLIKHVLEEDSGYYLCKVSNDVGADASK 73 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe----cC---CeEEECcCCcccCEEEEEEEEeCCCCCCce
Confidence 579999999999999999975322111 22344332 22 479999999999999999999998875433
No 90
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.20 E-value=6.1e-11 Score=86.84 Aligned_cols=67 Identities=28% Similarity=0.454 Sum_probs=52.8
Q ss_pred eEEEEEeec-cCCceEEEccCCeecCCCCCCc-eEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 69 SVLQCEAKG-EKPIGILWNMNNKRLDPKSDNR-YTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 69 ~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
+.|.|.+.| .|.|++.|+|++.++....... +.+. .....+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 69 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIR----NKKKNSELQINKAKLADSGEYTCVVENILGND 69 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEE----ecCceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence 479999999 9999999999999986543322 1221 22344689999999999999999999998774
No 91
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.18 E-value=1e-10 Score=88.85 Aligned_cols=74 Identities=20% Similarity=0.314 Sum_probs=56.6
Q ss_pred ceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCC------CCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEE
Q psy3718 59 RNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPK------SDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEI 132 (543)
Q Consensus 59 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 132 (543)
.++.+.+|+++.|.|.+.|.|.+.+.|++++..+... .+.++.+.. ......+|.|.++..+|+|.|+|.+
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~L~I~nV~~~D~G~YtC~~ 81 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVK---STPTELIISISNVQLSDEGEYTCSI 81 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEe---CCCceEEEEECCCCcccCEEEEEEE
Confidence 5788999999999999999999999999987643111 123443321 1223468999999999999999999
Q ss_pred ecc
Q psy3718 133 KSQ 135 (543)
Q Consensus 133 ~n~ 135 (543)
...
T Consensus 82 ~t~ 84 (95)
T cd05882 82 FTM 84 (95)
T ss_pred Eee
Confidence 884
No 92
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.17 E-value=6.9e-11 Score=86.67 Aligned_cols=65 Identities=28% Similarity=0.476 Sum_probs=53.2
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
+.|.|.+.|.|.|.+.|+|++..+......++.+. .++ ..|.|.++..+|+|.|+|.|.|..|..
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~----~~~--~~l~I~~~~~~D~G~Y~C~a~N~~G~~ 65 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLI----ANG--SELHISNVRYEDTGAYTCIAKNEAGVD 65 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEe----CCC--CEEEECcCCcccCEEEEEEEEcCCCCc
Confidence 47999999999999999999999865544455432 222 469999999999999999999987764
No 93
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.15 E-value=4.5e-11 Score=86.48 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=49.8
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
+.|.|.+.|.|.|.+.|+|++.++... +.... .....|.|.++..+|+|.|+|.|.|..|...
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~---~~~~~------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 63 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD---RTKFE------NFNKTLKIDNVSEEDDGEYRCTASNSLGSAR 63 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC---ceeEe------cCCCEEEECCCCHHHCEEEEEEEEeCCceEE
Confidence 479999999999999999999877421 22211 1124799999999999999999999988753
No 94
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.15 E-value=2.8e-10 Score=85.71 Aligned_cols=84 Identities=35% Similarity=0.607 Sum_probs=69.5
Q ss_pred CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEE
Q psy3718 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ 330 (543)
Q Consensus 251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 330 (543)
+|.++.+...+.+++.|.|..+... ++.+.+|.|.|+.......+....+ ......+.+.+|.|++.|.|+|+
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~~~--~~~~~~y~v~~~~~~~~~~~~~~~~-----~~~~~~~~i~~L~p~t~Y~~~v~ 74 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPSSG--NGPITGYRVEYRSVNSTSDWQEVTV-----PGNETSYTITGLQPGTTYEFRVR 74 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESSST--SSSESEEEEEEEETTSSSEEEEEEE-----ETTSSEEEEESCCTTSEEEEEEE
T ss_pred cCcCeEEEECCCCEEEEEEECCCCC--CCCeeEEEEEEEecccceeeeeeee-----eeeeeeeeeccCCCCCEEEEEEE
Confidence 6889999999999999999999733 7899999999998877653333333 34556999999999999999999
Q ss_pred EEeCCCCCCCC
Q psy3718 331 ALNKLGPGPMS 341 (543)
Q Consensus 331 a~n~~G~s~~s 341 (543)
|++..|.|++|
T Consensus 75 a~~~~g~g~~S 85 (85)
T PF00041_consen 75 AVNSDGEGPPS 85 (85)
T ss_dssp EEETTEEEEEE
T ss_pred EEeCCcCcCCC
Confidence 99999977653
No 95
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.14 E-value=1.6e-10 Score=86.01 Aligned_cols=68 Identities=21% Similarity=0.450 Sum_probs=50.4
Q ss_pred CCCeEEEEEeeccCCceEEEccCCe---ecCCCCC---CceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 66 GEPSVLQCEAKGEKPIGILWNMNNK---RLDPKSD---NRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 66 g~~~~l~C~~~g~p~~~i~W~~~~~---~i~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
|++++|.|.+.|.|.|.+.|+|++. ++..... .++.+. ..+.|.|.++..+|+|.|.|.|.|..|++
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 73 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVT-------NIGQLVIYNAQPQDAGLYTCTARNSGGLL 73 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEc-------cccEEEEccCCcccCEEEEEEEecCCceE
Confidence 7899999999999999999999742 1111111 111111 12479999999999999999999998885
Q ss_pred e
Q psy3718 140 Q 140 (543)
Q Consensus 140 ~ 140 (543)
.
T Consensus 74 ~ 74 (81)
T cd05765 74 R 74 (81)
T ss_pred E
Confidence 3
No 96
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.13 E-value=2.4e-10 Score=85.64 Aligned_cols=77 Identities=23% Similarity=0.440 Sum_probs=60.8
Q ss_pred CeEEee-cceeEeecCCCeEEEEE-eeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCc-cE
Q psy3718 52 PEFEIK-LRNQTSRRGEPSVLQCE-AKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSA-LF 128 (543)
Q Consensus 52 p~~~~~-~~~~~v~~g~~~~l~C~-~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y 128 (543)
|.|... ++.+.+.+|+.+.|.|. ..|.|.|.|.|++++..+.. .+.|+.+. .+ ++|.|.++..+|+| .|
T Consensus 3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~-~~~Ri~~~----~~---GnL~fs~v~~~D~g~~Y 74 (95)
T cd05845 3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT-QDERVSMG----QN---GNLYFANVEEQDSHPDY 74 (95)
T ss_pred CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc-ccccEEEC----CC---ceEEEEEEehhhCCCCe
Confidence 344433 56789999999999997 79999999999988765432 45566543 22 48999999999999 89
Q ss_pred EEEEeccc
Q psy3718 129 TCEIKSQK 136 (543)
Q Consensus 129 ~C~a~n~~ 136 (543)
.|.|+|..
T Consensus 75 ~C~a~~~~ 82 (95)
T cd05845 75 ICHAHFPG 82 (95)
T ss_pred EEEEEccc
Confidence 99999974
No 97
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.13 E-value=1.8e-10 Score=84.39 Aligned_cols=67 Identities=25% Similarity=0.443 Sum_probs=51.0
Q ss_pred eEEEEEeec-cCCceEEEccCCeecCCCCC--CceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 69 SVLQCEAKG-EKPIGILWNMNNKRLDPKSD--NRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 69 ~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
+.|.|.+.+ .|.+.+.|+|+++++..... .++.+. ..+..+.|.|.++..+|+|.|+|.|+|..|..
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~----~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~ 70 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIR----KKKKSSELQISKASLADNGEYKCMVSSKLGND 70 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEE----eCCcEEEEEECcCCcccCEEEEEEEEeCCCce
Confidence 479999875 57799999999999864332 223322 12334689999999999999999999987764
No 98
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.13 E-value=3.3e-10 Score=84.43 Aligned_cols=70 Identities=16% Similarity=0.353 Sum_probs=50.3
Q ss_pred CCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccc
Q psy3718 66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKI 137 (543)
Q Consensus 66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 137 (543)
|++++|.|.+.|.|.+.+.|+++++............ ........+.|.|.+++.+|+|.|+|.|+|..+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~ 70 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEV--KVPATTLRSTLTFPHATVEDSGTYECAAHESTQ 70 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEE--ecCCcEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence 7899999999999999999998876432111000011 111223457899999999999999999998643
No 99
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.13 E-value=4.1e-10 Score=85.95 Aligned_cols=75 Identities=19% Similarity=0.300 Sum_probs=56.2
Q ss_pred cceeEeecCCCeEEEEEeeccCCceEEEccCCeec-C-----CCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718 58 LRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRL-D-----PKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE 131 (543)
Q Consensus 58 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i-~-----~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 131 (543)
++++.+.+|++++|.|.+.+.|.+.+.|++.+..+ . ...+.++.+... .....+|.|.+++.+|+|.|+|.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~---~~~~~sL~I~~v~~~DsG~Y~C~ 80 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA---SWHELSISISDVSLSDEGQYTCS 80 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEEC---CCCcEEEEECcCCcccCEEEEEE
Confidence 57889999999999999999999999998643211 0 112345544211 22335899999999999999999
Q ss_pred Eecc
Q psy3718 132 IKSQ 135 (543)
Q Consensus 132 a~n~ 135 (543)
+.+.
T Consensus 81 ~~t~ 84 (95)
T cd07701 81 LFTM 84 (95)
T ss_pred eEee
Confidence 9985
No 100
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.11 E-value=2.6e-10 Score=86.01 Aligned_cols=79 Identities=23% Similarity=0.360 Sum_probs=57.2
Q ss_pred eEeecCCCeEEEEEeeccCCceEEEccCCeecCCC------------CCCceEEeeeecCCCceeeEEEEeeecCCCccE
Q psy3718 61 QTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPK------------SDNRYTIREEILPNGVLSDLSIKRTERGDSALF 128 (543)
Q Consensus 61 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 128 (543)
+.+.+|++++|.|.+.+.+.+.+.|++++...... ...++.++.... .....+|+|.+++.+|+|.|
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~-~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLW-DQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccC-CCCeEEEEECCCCHHHCEEE
Confidence 45789999999999999999999999776332121 223333332211 22346799999999999999
Q ss_pred EEEEecccceee
Q psy3718 129 TCEIKSQKISSQ 140 (543)
Q Consensus 129 ~C~a~n~~~sv~ 140 (543)
.|.+.|..+.|+
T Consensus 81 ~C~v~~~~~~~~ 92 (94)
T cd07690 81 ICEVEDKKEEVE 92 (94)
T ss_pred EEEECCccceEE
Confidence 999999766553
No 101
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.10 E-value=2.2e-10 Score=85.79 Aligned_cols=73 Identities=22% Similarity=0.331 Sum_probs=53.1
Q ss_pred CCCeEEEEEeecc--CCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 66 GEPSVLQCEAKGE--KPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 66 g~~~~l~C~~~g~--p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
|++++|.|.+.|. |.+.+.|.++++.+......... ..........+.|.|.+++.+|+|.|+|.|.|..+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~ 75 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTR-QSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQ 75 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecc-cccccceEEEEEEEECCCChhhCEEEEEEEccCCCce
Confidence 7899999999999 88999999988765322111000 0000122345789999999999999999999987663
No 102
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.09 E-value=2.9e-10 Score=85.37 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=58.6
Q ss_pred EeecceeEeecCCCeEEEEEeec-cCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEe
Q psy3718 55 EIKLRNQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK 133 (543)
Q Consensus 55 ~~~~~~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 133 (543)
...|..+.+.+|++++|.|.+.+ .|.+.+.|++++..+.. +.. .. .+.|.|.+++.+|+|.|.|.|.
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~----~~~------~~--~~~L~I~~v~~~DsG~Y~C~a~ 72 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS----RAM------DF--NGILTIRNVQLSDAGTYVCTGS 72 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC----ccc------cc--CCEEEECCCCHHHCEEEEEEEe
Confidence 34567788999999999999975 68899999999876532 111 11 1479999999999999999999
Q ss_pred cccceee
Q psy3718 134 SQKISSQ 140 (543)
Q Consensus 134 n~~~sv~ 140 (543)
|..|...
T Consensus 73 n~~g~~~ 79 (85)
T cd05754 73 NMLDTDE 79 (85)
T ss_pred ccCCeEe
Confidence 9877753
No 103
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.09 E-value=3.8e-10 Score=83.76 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=56.3
Q ss_pred eeEeecCCCeEEEEEeec-cCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718 60 NQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS 138 (543)
Q Consensus 60 ~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s 138 (543)
...+.+|++++|.|.+.+ .+.+.+.|+|+|..+.... ...+|.|.+++.+|+|.|.|.|.+..+.
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~--------------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~ 73 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH--------------SNSNLSIPQATLSDSGSYHCSGIIGSYD 73 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC--------------CCceEEECccCHHHCEEEEEEEEeCCce
Confidence 446789999999999854 5668899999998764210 1147999999999999999999998776
Q ss_pred eeeeeeec
Q psy3718 139 SQQMTYEA 146 (543)
Q Consensus 139 v~~~~~~v 146 (543)
..+.++.|
T Consensus 74 ~~s~~~~i 81 (83)
T cd05753 74 YSSEPVSI 81 (83)
T ss_pred ecCCCEEE
Confidence 54444433
No 104
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.07 E-value=4.4e-10 Score=84.36 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=55.0
Q ss_pred ceeEeecCCCeEEEEEe-eccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718 59 RNQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK 136 (543)
Q Consensus 59 ~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 136 (543)
....+.+|+.+.|.|.. .|.|.+.+.|++++.++....+.+..+.. .+ ++|.|.++..+|+|.|+|.|+|..
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~---~~---G~L~fs~v~~~D~g~Y~C~A~n~~ 83 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ---TN---GNLYIAKVEASDRGNYSCFVSSPS 83 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC---CC---CcEEEeecCHhhCceeEEEEEecc
Confidence 34678999999999964 67899999999998875322233322221 23 489999999999999999999963
No 105
>KOG0196|consensus
Probab=98.99 E-value=9.8e-09 Score=102.36 Aligned_cols=125 Identities=30% Similarity=0.459 Sum_probs=100.2
Q ss_pred eEEEEEEEEEcCCCCCCC----CccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCC
Q psy3718 218 KTYHIRIVAENEIGSSEP----SDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETST 293 (543)
Q Consensus 218 ~~y~~~v~a~n~~G~~~~----s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~ 293 (543)
++|.|.|.|.|..-.-.+ ...+.+.+....|+ +...++....+.+++.|+|..|... ++.+..|+|.|.+.+.
T Consensus 409 ~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps-~V~~~r~~~~~~~sitlsW~~p~~p--ng~ildYEvky~ek~~ 485 (996)
T KOG0196|consen 409 TNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPS-PVSVLRQVSRTSDSITLSWSEPDQP--NGVILDYEVKYYEKDE 485 (996)
T ss_pred cccEEEEEEeecccccCCCCCcceeEEeeccccCCC-ccceEEEeeeccCceEEecCCCCCC--CCcceeEEEEEeeccc
Confidence 999999999997654322 23445666666665 5558899999999999999999877 8889999999988765
Q ss_pred CCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcceeeeccCC
Q psy3718 294 DKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEG 351 (543)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~~ 351 (543)
. +..+..+ ....+..++.+|+|++.|.|+|+|+..+|.|+.|....++|.+.
T Consensus 486 ~-e~~~~~~-----~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 486 D-ERSYSTL-----KTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred c-ccceeEE-----ecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 3 2333333 23567899999999999999999999999999999999999754
No 106
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.99 E-value=4.3e-09 Score=79.16 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=57.4
Q ss_pred eEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 61 QTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 61 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
+.+..|+.+.|.|.+.+.|.+.+.|++++..+... ....... .......|.|.++..+|+|.|.|.|.|..|..
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~--~~~~~~~---~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~ 77 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKE--HRIGGYK---VRKKKWTLILESVVPSDSGKYTCIVENKYGSI 77 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECccc--CceeEEE---ccCcEEEEEEeECCcccCEEEEEEEEECCceE
Confidence 45678999999999999999999999999887532 2222111 12233579999999999999999999987764
No 107
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.99 E-value=9.4e-10 Score=83.01 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=54.2
Q ss_pred eeEeecCCCeEEEEEeecc-----CCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEec
Q psy3718 60 NQTSRRGEPSVLQCEAKGE-----KPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKS 134 (543)
Q Consensus 60 ~~~v~~g~~~~l~C~~~g~-----p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n 134 (543)
.+.+..|+++.|.|...+. |.|.+.|+||+.++... .+ .+. .+ +.|.|.++..+|+|.|+|.|.|
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~--~~-~~~----~~---~~L~I~~v~~~DsG~YtC~~~n 73 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD--RK-RFV----KG---SKLLIQNVTEEDAGNYTCKLTF 73 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC--cc-EEe----cC---CEEEEeeCChhhCEEEEEEEEe
Confidence 4678899999999997653 56899999999998532 22 221 11 4799999999999999999999
Q ss_pred ccce
Q psy3718 135 QKIS 138 (543)
Q Consensus 135 ~~~s 138 (543)
..+.
T Consensus 74 ~~~~ 77 (92)
T cd05757 74 THNG 77 (92)
T ss_pred cCCC
Confidence 7655
No 108
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.92 E-value=7.4e-09 Score=79.51 Aligned_cols=75 Identities=20% Similarity=0.351 Sum_probs=55.0
Q ss_pred cceeEeecCCCeEEEEEeeccCCceEEEccCCeec-C-----CCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718 58 LRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRL-D-----PKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE 131 (543)
Q Consensus 58 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i-~-----~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 131 (543)
++++.+.+|++++|.|.+.+.+.+.+.|++.+..+ . ...+.++.+.. ..+...+|.|.+++.+|+|.|.|.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVN---FSANELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEc---CCCCeeEEEEccCCcccCEEEEEE
Confidence 45688999999999999999888999998633221 0 01234555421 122335799999999999999999
Q ss_pred Eecc
Q psy3718 132 IKSQ 135 (543)
Q Consensus 132 a~n~ 135 (543)
+.+.
T Consensus 81 ~~~~ 84 (95)
T cd05717 81 LYTM 84 (95)
T ss_pred EecC
Confidence 9885
No 109
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.91 E-value=4.4e-09 Score=73.83 Aligned_cols=62 Identities=27% Similarity=0.447 Sum_probs=49.6
Q ss_pred cCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718 65 RGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK 136 (543)
Q Consensus 65 ~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 136 (543)
+|++++|.|.+.+.|.+.+.|++++..+. . ..... .....|.|.++..+|+|.|+|.+.|..
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~--~~~~~------~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--E--SNRLS------ASGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC--C--CCEEe------cCCcEEEEeeCCcccCEEEEEEEecCC
Confidence 48899999999989999999999998875 1 11111 112479999999999999999999864
No 110
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.89 E-value=5.9e-09 Score=77.38 Aligned_cols=77 Identities=21% Similarity=0.402 Sum_probs=58.5
Q ss_pred CeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718 52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE 131 (543)
Q Consensus 52 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 131 (543)
|.+...+ ..+.+|++++|.|.+.+.|.+.+.|++++..+.... ..|.|.++..+|+|.|+|.
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~----------------~~~~~~~~~~~~~g~y~C~ 63 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ----------------NGLFIPNVSPEDSGNYTCR 63 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES----------------SEEEESSEEGGGTEEEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee----------------eeeeeeeeccccCEEEEEE
Confidence 5555544 668999999999999999899999999887774110 1267788999999999999
Q ss_pred Eecccceeeeeeeec
Q psy3718 132 IKSQKISSQQMTYEA 146 (543)
Q Consensus 132 a~n~~~sv~~~~~~v 146 (543)
|.+..+.....++.|
T Consensus 64 ~~~~~~~~~s~~~~v 78 (80)
T PF13895_consen 64 ASNGSGSNTSTSVNV 78 (80)
T ss_dssp EEETTEEEEEEEEEE
T ss_pred EEeCCCCeEeeeEEe
Confidence 999766544444443
No 111
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.88 E-value=1.1e-08 Score=77.24 Aligned_cols=67 Identities=15% Similarity=0.366 Sum_probs=49.0
Q ss_pred eeEeecCCCeEEEEEeeccCCceEEEccCC--eecCC--CCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718 60 NQTSRRGEPSVLQCEAKGEKPIGILWNMNN--KRLDP--KSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 60 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~i~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
.+.+.+|+++.|.|.. +.|.|.+.|+|++ ..... ....++... + +.|.|.++.++|+|.|+|.|.+.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~-----~---~~L~I~~~~~~DsG~Y~C~a~~~ 75 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT-----E---RGLLLRSLQRSDAGVYTCTAVEH 75 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe-----c---CeEEEeeCChhHCEEEEEEEEcc
Confidence 4678899999999996 5788999999843 22211 122344332 1 35999999999999999999863
No 112
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.84 E-value=1.1e-08 Score=76.42 Aligned_cols=73 Identities=23% Similarity=0.351 Sum_probs=49.6
Q ss_pred CCCeEEEEEeeccC--CceEEEccCCeecCCCC-CCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 66 GEPSVLQCEAKGEK--PIGILWNMNNKRLDPKS-DNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 66 g~~~~l~C~~~g~p--~~~i~W~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
|+++.|.|.+.+++ .+.+.|.++++.+.... ......... ......+.|.|.+++.+|+|.|+|.|+|..+.+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~-~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~ 76 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQ-EHTELSSTLTIENVTLSDLGRYTCTASSGQMIA 76 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceeccccccccc-ccceeeeEEEEecCCcccCEEEEEEEeecceEe
Confidence 78999999999865 46889988776442111 111010000 012345789999999999999999999976653
No 113
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.82 E-value=1.3e-08 Score=76.54 Aligned_cols=71 Identities=17% Similarity=0.318 Sum_probs=52.9
Q ss_pred eEeecCCCeEEEEEe-e----ccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718 61 QTSRRGEPSVLQCEA-K----GEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 61 ~~v~~g~~~~l~C~~-~----g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
+.+..|.+..|.|.- . ..+.+++.|+||+.++.. ++.++..- .+. ..|.|.++..+|+|.|+|.|++.
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~-~~~~~~~~----~~~--~~L~I~~v~~~D~G~YtC~~~~~ 77 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDK-DNEKFYSL----KGS--TYLHIIDVSLNDSGYYTCKLQFT 77 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcC-CCcceEec----CCC--CEEEEEEcChhhCEEEEEEEEEe
Confidence 556789999999973 2 235689999999999853 33343321 111 36999999999999999999997
Q ss_pred cce
Q psy3718 136 KIS 138 (543)
Q Consensus 136 ~~s 138 (543)
.+.
T Consensus 78 ~~g 80 (95)
T cd05897 78 HEG 80 (95)
T ss_pred eCC
Confidence 554
No 114
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.81 E-value=5.9e-09 Score=78.41 Aligned_cols=83 Identities=19% Similarity=0.348 Sum_probs=54.5
Q ss_pred CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718 356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG 435 (543)
Q Consensus 356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~ 435 (543)
+|.++++...+.+++.|.|.+|. ..++.+.+|.|+|.
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~--~~~~~~~~y~v~~~----------------------------------------- 38 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPS--SGNGPITGYRVEYR----------------------------------------- 38 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESS--STSSSESEEEEEEE-----------------------------------------
T ss_pred cCcCeEEEECCCCEEEEEEECCC--CCCCCeeEEEEEEE-----------------------------------------
Confidence 67888888889999999999773 34555555555554
Q ss_pred eCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCc
Q psy3718 436 PSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKC 499 (543)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~ 499 (543)
..+.. ....... .......+.+.+|.|+ .|.|+|+| .+..|.|++|
T Consensus 39 ~~~~~-~~~~~~~---~~~~~~~~~i~~L~p~t~Y~~~v~a--------------~~~~g~g~~S 85 (85)
T PF00041_consen 39 SVNST-SDWQEVT---VPGNETSYTITGLQPGTTYEFRVRA--------------VNSDGEGPPS 85 (85)
T ss_dssp ETTSS-SEEEEEE---EETTSSEEEEESCCTTSEEEEEEEE--------------EETTEEEEEE
T ss_pred ecccc-eeeeeee---eeeeeeeeeeccCCCCCEEEEEEEE--------------EeCCcCcCCC
Confidence 33321 0001110 0122234566699999 99999999 9999998753
No 115
>KOG4802|consensus
Probab=98.80 E-value=7.7e-08 Score=88.20 Aligned_cols=173 Identities=17% Similarity=0.178 Sum_probs=105.3
Q ss_pred EEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEE---------cCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEE
Q psy3718 257 VEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE---------TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSV 327 (543)
Q Consensus 257 ~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 327 (543)
.......++.+.|...... .-|.+.+.. .+....++|+++.. ......+.+++++|+..|+|
T Consensus 154 y~r~~~g~~av~w~~~~~~------~v~~~~~~vr~~w~~g~hase~~~thwQtv~~---t~~e~~~~~t~~rPgRwyef 224 (516)
T KOG4802|consen 154 YFRRSRGSHAVDWKIESSL------LVYYVHVEVRSHWGRGFHASELGPTHWQTVEK---TMEENTYIFTDMRPGRWYEF 224 (516)
T ss_pred hhhhccCceeeeeeecccc------ceeeeehhhhhhhcccccccccccccceeeee---cCCCceeeeeecCcceeEEE
Confidence 3344567788999876532 222222211 12233455666543 33455888999999999999
Q ss_pred EEEEEeCCCC---CCCCcceeeeccCCCCCCCCCCcEEEEeccC---eEEEEccCCCCCCCCCceEEEEEEEEeCCcccC
Q psy3718 328 VVQALNKLGP---GPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQ---TIRVSWVSPPLITANGVIKGYKVVYGPSDTWYG 401 (543)
Q Consensus 328 ~V~a~n~~G~---s~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~---~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~ 401 (543)
+|.|+|..|. +.++......-.+.+|+ +|.++++..+..+ ...|.|.|+ ..+-+|..|.|.|.-..+
T Consensus 225 rvaavn~~G~rGFs~PSkpf~ssk~pkaPp-~P~dl~l~~v~~dG~~~~~v~w~P~---~sdlPv~~Yki~Ws~~v~--- 297 (516)
T KOG4802|consen 225 RVAAVNAYGFRGFSEPSKPFPSSKNPKAPP-SPNDLKLIGVQFDGRYMLKVVWCPS---KSDLPVEKYKITWSLYVN--- 297 (516)
T ss_pred EEeeeecccccccCCCCCCCCCCCCCCCCc-CcccceeeeeeecceEEEEEEeCCC---CCCCcceeeEEEeehhhh---
Confidence 9999999873 34555544444445554 7888888765432 345666665 456678888887742210
Q ss_pred CCCCCccceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCC
Q psy3718 402 DPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPP 480 (543)
Q Consensus 402 ~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~ 480 (543)
. ... .+....... .+..++++++|.|+ .|.+.|+|
T Consensus 298 -------------------s-~k~--------------~m~tks~~~-----k~thq~si~~L~Pns~Y~VevqA----- 333 (516)
T KOG4802|consen 298 -------------------S-AKA--------------SMITKSSYV-----KDTHQFSIKELLPNSSYYVEVQA----- 333 (516)
T ss_pred -------------------h-hhh--------------hccccccee-----eccchhhhhhcCCCCeEEEEEEE-----
Confidence 0 000 000111111 34446678899999 99999999
Q ss_pred CCCCCccccccccccCCC
Q psy3718 481 CPGSDETLYSRHRGESDK 498 (543)
Q Consensus 481 ~~~~~~~~~~~~~G~g~~ 498 (543)
++..|.+.-
T Consensus 334 ---------i~y~g~~rL 342 (516)
T KOG4802|consen 334 ---------ISYLGSRRL 342 (516)
T ss_pred ---------EEeccCccc
Confidence 888887654
No 116
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.77 E-value=6.5e-08 Score=72.67 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=61.5
Q ss_pred eeEeecCCCeEEEEEeeccCCce-EEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718 60 NQTSRRGEPSVLQCEAKGEKPIG-ILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS 138 (543)
Q Consensus 60 ~~~v~~g~~~~l~C~~~g~p~~~-i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s 138 (543)
.+.|.+|+.+.|.|.+.+.|.|+ +.|.+++..+.....+.+..+. .......+.|.+..++.+|+|.|+|.|+|.+++
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~-~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRN-ESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEec-cCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 57899999999999999999998 9999998877543333222211 111234578999999999999999999998777
Q ss_pred e
Q psy3718 139 S 139 (543)
Q Consensus 139 v 139 (543)
.
T Consensus 91 ~ 91 (101)
T cd05860 91 A 91 (101)
T ss_pred E
Confidence 4
No 117
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.76 E-value=8.1e-08 Score=72.38 Aligned_cols=74 Identities=18% Similarity=0.303 Sum_probs=56.8
Q ss_pred ceeEeecCCCeEEEEEeeccCCceEEEccCCeecC------CCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEE
Q psy3718 59 RNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLD------PKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEI 132 (543)
Q Consensus 59 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 132 (543)
+++.+.+|++++|.|.+.+.....+.|++.+..+. ...+.|+.+... ++...+|.|.+++.+|+|.|.|.+
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~---~~~~~tL~I~~vq~~D~G~Y~Cqv 81 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNF---SSNELRVSLSNVSLSDEGRYFCQL 81 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeC---CCCEEEEEECcCCcccCEEEEEEE
Confidence 56889999999999999998777788887664431 124556665431 344568999999999999999999
Q ss_pred ecc
Q psy3718 133 KSQ 135 (543)
Q Consensus 133 ~n~ 135 (543)
...
T Consensus 82 ~t~ 84 (95)
T cd05881 82 YTD 84 (95)
T ss_pred Ecc
Confidence 773
No 118
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.75 E-value=8e-08 Score=69.47 Aligned_cols=67 Identities=15% Similarity=0.298 Sum_probs=48.2
Q ss_pred CeEEEEEeec-cCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718 68 PSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS 138 (543)
Q Consensus 68 ~~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s 138 (543)
.+.|.|.+.+ .|+++|.|+||+++|....... .... .....+.|.|.....+|.+.|+|.|.|..+.
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~--~~~~--~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQ--ENGK--TVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccc--cCCc--eEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 3789999875 6889999999999995432100 0000 0012357999999999999999999998554
No 119
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.75 E-value=2.8e-08 Score=69.99 Aligned_cols=63 Identities=24% Similarity=0.437 Sum_probs=44.9
Q ss_pred CCCeEEEEEe-eccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEE
Q psy3718 66 GEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEI 132 (543)
Q Consensus 66 g~~~~l~C~~-~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 132 (543)
|+.++|.|.+ .+.+...+.|.+++..+... ..... ..........|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~--~~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEG--STTNR--STNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEE--EEEEE--EETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCc--ceeEe--ecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 77788999999998766421 11111 1111111123999999999999999987
No 120
>smart00409 IG Immunoglobulin.
Probab=98.71 E-value=1.9e-07 Score=70.01 Aligned_cols=74 Identities=28% Similarity=0.513 Sum_probs=58.6
Q ss_pred ceeEeecCCCeEEEEEeeccCCceEEEccC-CeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccc
Q psy3718 59 RNQTSRRGEPSVLQCEAKGEKPIGILWNMN-NKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKI 137 (543)
Q Consensus 59 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 137 (543)
..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+. ...++..... .....|.|.++..+|+|.|.|.+.+..+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~v~~~~~ 75 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--ESGRFSVSRS----GSNSTLTISNVTPEDSGTYTCAATNSSG 75 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--CCCcEEEEEc----CCeeEEEEEeeccccCeEEEEEEEcCCC
Confidence 456788999999999999988899999998 87775 3344544322 1146899999999999999999998655
Q ss_pred e
Q psy3718 138 S 138 (543)
Q Consensus 138 s 138 (543)
.
T Consensus 76 ~ 76 (86)
T smart00409 76 S 76 (86)
T ss_pred e
Confidence 4
No 121
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.71 E-value=1.9e-07 Score=70.01 Aligned_cols=74 Identities=28% Similarity=0.513 Sum_probs=58.6
Q ss_pred ceeEeecCCCeEEEEEeeccCCceEEEccC-CeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccc
Q psy3718 59 RNQTSRRGEPSVLQCEAKGEKPIGILWNMN-NKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKI 137 (543)
Q Consensus 59 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 137 (543)
..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+. ...++..... .....|.|.++..+|+|.|.|.+.+..+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~v~~~~~ 75 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--ESGRFSVSRS----GSNSTLTISNVTPEDSGTYTCAATNSSG 75 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--CCCcEEEEEc----CCeeEEEEEeeccccCeEEEEEEEcCCC
Confidence 456788999999999999988899999998 87775 3344544322 1146899999999999999999998655
Q ss_pred e
Q psy3718 138 S 138 (543)
Q Consensus 138 s 138 (543)
.
T Consensus 76 ~ 76 (86)
T smart00410 76 S 76 (86)
T ss_pred e
Confidence 4
No 122
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.69 E-value=2.4e-08 Score=73.01 Aligned_cols=74 Identities=22% Similarity=0.378 Sum_probs=52.5
Q ss_pred CCeEEeecceeEeecCCCeEEEEEeeccC-CceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEK-PIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT 129 (543)
Q Consensus 51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p-~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 129 (543)
+|.|...+.......+. ++|.|.+.+.+ .+.+.|+ +.... ............+.|.|.++..+|.|.|+
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~--------~~~~~~~~~~~~~~L~i~~v~~~~~g~y~ 70 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPS--------FNSNSRGSSSSNSTLTISNVTRSDNGTYT 70 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEE--------EEEEEEEEEEEEEEEEESSCCGGGTEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCc--------eeeeeeeccceeeEEEEccCCHHhCcEEE
Confidence 47777777776665555 99999999987 8999999 11111 00001112234468999999999999999
Q ss_pred EEEec
Q psy3718 130 CEIKS 134 (543)
Q Consensus 130 C~a~n 134 (543)
|.|+|
T Consensus 71 C~a~N 75 (75)
T PF13927_consen 71 CIASN 75 (75)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99987
No 123
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.69 E-value=7.4e-08 Score=70.73 Aligned_cols=66 Identities=23% Similarity=0.428 Sum_probs=53.9
Q ss_pred ceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718 59 RNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 59 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
.+..+.+|+++.|.|...+. .+.+.|++++.++.. +.++... .+ .|.|.+++++|+|.|.|.+.-.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~--~~r~~~~----~~----GLlI~~~~~~dsG~Y~C~s~E~ 69 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNA--QFSYRVG----TD----GLLILVTSPEHSGTYRCYSEEE 69 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCC--CcceEEe----CC----CCEEEECCHhhCEEEEEEEecC
Confidence 56789999999999999876 569999999999864 3455433 23 3889999999999999999753
No 124
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.65 E-value=5.3e-08 Score=71.85 Aligned_cols=36 Identities=14% Similarity=-0.013 Sum_probs=33.2
Q ss_pred cCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCC
Q psy3718 17 GRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPP 52 (543)
Q Consensus 17 ~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p 52 (543)
.+|+|+|.| |+|.|+|.|.|.++.. +++.|.|+.||
T Consensus 45 ~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP 85 (85)
T cd05853 45 SAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP 85 (85)
T ss_pred CCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence 457999999 9999999999999996 78999999998
No 125
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.65 E-value=2.1e-07 Score=69.20 Aligned_cols=63 Identities=30% Similarity=0.644 Sum_probs=45.7
Q ss_pred CeEEEEEeec-cCCceEEEccCCeecCCCCCCceEEeeeecCCC----ceeeEEEEeeecCCCccEEEEEecc
Q psy3718 68 PSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEILPNG----VLSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 68 ~~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
+++|.|.+.| .|.+.|.|+|+|+++... .... ....++ ..+.|.|.....+|.|.|+|.|.|.
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~---~~~~--~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~ 68 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGA---TYSK--ELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNE 68 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCc---eeee--eEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCc
Confidence 4689999987 688999999999988522 1111 111222 2357888877788899999999996
No 126
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.63 E-value=1.1e-07 Score=71.74 Aligned_cols=69 Identities=19% Similarity=0.410 Sum_probs=50.8
Q ss_pred ceeEeecCCCeEEEEEee-----------ccCCceEEEccCCeecCCCCC-----CceEEeeeecCCCceeeEEEEeeec
Q psy3718 59 RNQTSRRGEPSVLQCEAK-----------GEKPIGILWNMNNKRLDPKSD-----NRYTIREEILPNGVLSDLSIKRTER 122 (543)
Q Consensus 59 ~~~~v~~g~~~~l~C~~~-----------g~p~~~i~W~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~L~i~~~~~ 122 (543)
....+.+|+++.|.|... ......+.|+|++..+..... .|+.... ..|.|.++..
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~--------~~Lwf~Pa~~ 79 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE--------DSIWFRPAEL 79 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC--------CEEEEEeCCh
Confidence 346788999999999972 122358999999865543221 2333332 3799999999
Q ss_pred CCCccEEEEEecc
Q psy3718 123 GDSALFTCEIKSQ 135 (543)
Q Consensus 123 ~D~G~Y~C~a~n~ 135 (543)
+|+|.|+|++.|.
T Consensus 80 eDSG~Y~C~~rN~ 92 (104)
T cd05896 80 QDSGLYTCVLRNS 92 (104)
T ss_pred hhCeEEEEEECCC
Confidence 9999999999996
No 127
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.61 E-value=1.3e-07 Score=74.80 Aligned_cols=78 Identities=18% Similarity=0.326 Sum_probs=57.9
Q ss_pred eecceeEeecCCCeEEEEEeeccCCceEEEccCCe--ec----------CCCCCCceEEeeeecCCCceeeEEEEeeecC
Q psy3718 56 IKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNK--RL----------DPKSDNRYTIREEILPNGVLSDLSIKRTERG 123 (543)
Q Consensus 56 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 123 (543)
..|..+.+.+|++++|.|.+.+.+...+.|+|... .. ......++.+... ......+|.|.+++.+
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~~~~~ 80 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLD--KSRKSSSLHISAAQLS 80 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEc--ccCCEEEEEECCCCHH
Confidence 45678889999999999999988888999997431 10 0013345555432 2235578999999999
Q ss_pred CCccEEEEEecc
Q psy3718 124 DSALFTCEIKSQ 135 (543)
Q Consensus 124 D~G~Y~C~a~n~ 135 (543)
|+|.|.|.+.+.
T Consensus 81 DsG~Y~C~~~~~ 92 (109)
T cd04983 81 DSAVYFCALSES 92 (109)
T ss_pred HCEEEEEEEecC
Confidence 999999999874
No 128
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.58 E-value=9.5e-08 Score=68.81 Aligned_cols=47 Identities=13% Similarity=-0.024 Sum_probs=37.0
Q ss_pred ccEEEeecCC------CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGFN------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~~------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
|.++|++... ++.++.+|+|.|.+ |+|.|+|.|.|..|.. +++.|.|
T Consensus 16 p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 16 PKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 5678887432 33445789999999 9999999999999997 5677765
No 129
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.54 E-value=2.3e-07 Score=70.31 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=55.7
Q ss_pred CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC 130 (543)
Q Consensus 51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 130 (543)
.|.+...|+ ..|.+|++++|.|... .+...+.|+|+|........ ...+....+.|.+++.+|+|.|+|
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~---------~~~~~~~~f~i~~v~~~~~G~Y~C 70 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKP---------PEPQNKAKFFIPSMKREHAGRYRC 70 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccccc---------CCCceeEEEEccCCChhHCEEEEE
Confidence 366666664 4778999999999886 56678999999986532110 112334679999999999999999
Q ss_pred EEecc
Q psy3718 131 EIKSQ 135 (543)
Q Consensus 131 ~a~n~ 135 (543)
...+.
T Consensus 71 ~~~~~ 75 (91)
T cd05751 71 YYRSG 75 (91)
T ss_pred EEECC
Confidence 99985
No 130
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.53 E-value=2.2e-07 Score=82.95 Aligned_cols=80 Identities=24% Similarity=0.364 Sum_probs=54.0
Q ss_pred cceeEeecCCCeEEEEEeeccC-----------CceEEEccCCeecCCC-CCCc---eEEeeeecCCCceeeEEEEeeec
Q psy3718 58 LRNQTSRRGEPSVLQCEAKGEK-----------PIGILWNMNNKRLDPK-SDNR---YTIREEILPNGVLSDLSIKRTER 122 (543)
Q Consensus 58 ~~~~~v~~g~~~~l~C~~~g~p-----------~~~i~W~~~~~~i~~~-~~~~---~~~~~~~~~~~~~~~L~i~~~~~ 122 (543)
+..+.+.+|+++.|.|.+.+.| .+.+.|+|++...-.. .+.+ ..+......+ ...+|.|.+++.
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~-r~~~L~I~~v~~ 107 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGD-RSENLWIGNVIN 107 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceec-CCCeEEECCCCh
Confidence 4567889999999999998754 3599999987652110 1111 0000000011 124799999999
Q ss_pred CCCccEEEEEecccce
Q psy3718 123 GDSALFTCEIKSQKIS 138 (543)
Q Consensus 123 ~D~G~Y~C~a~n~~~s 138 (543)
+|+|.|+|.|+|..+.
T Consensus 108 ~DsG~Y~C~a~N~~~~ 123 (227)
T PHA02826 108 IDEGIYICTISSGNIC 123 (227)
T ss_pred HHCEEEEEEEEECCcc
Confidence 9999999999997655
No 131
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.53 E-value=2.8e-07 Score=72.87 Aligned_cols=76 Identities=22% Similarity=0.379 Sum_probs=55.1
Q ss_pred eecceeEeecCCCeEEEEEeeccCCceEEEccCCe--ecC--------------CCCCCceEEeeeecCCCceeeEEEEe
Q psy3718 56 IKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNK--RLD--------------PKSDNRYTIREEILPNGVLSDLSIKR 119 (543)
Q Consensus 56 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--~i~--------------~~~~~~~~~~~~~~~~~~~~~L~i~~ 119 (543)
..|..+.+.+|++++|.|.+.+ +...+.|+|... .+. .....++.+... +....+|.|.+
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~L~I~~ 78 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP---SLTRSSLTIKS 78 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc---CCCccEEEECC
Confidence 4567889999999999999988 678999998532 111 011234443321 22346899999
Q ss_pred eecCCCccEEEEEecc
Q psy3718 120 TERGDSALFTCEIKSQ 135 (543)
Q Consensus 120 ~~~~D~G~Y~C~a~n~ 135 (543)
++++|+|.|.|.+.+.
T Consensus 79 ~~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 79 AEPEDSAVYLCASSLG 94 (110)
T ss_pred CChhhCEEEEEEeeCC
Confidence 9999999999999874
No 132
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.46 E-value=7.3e-07 Score=69.97 Aligned_cols=77 Identities=19% Similarity=0.355 Sum_probs=54.3
Q ss_pred EEeecceeEeecCCCeEEEEEeeccC-CceEEEccCC--ee---c-------CCCCCCceEEeeeecCCCceeeEEEEee
Q psy3718 54 FEIKLRNQTSRRGEPSVLQCEAKGEK-PIGILWNMNN--KR---L-------DPKSDNRYTIREEILPNGVLSDLSIKRT 120 (543)
Q Consensus 54 ~~~~~~~~~v~~g~~~~l~C~~~g~p-~~~i~W~~~~--~~---i-------~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 120 (543)
+...|..+.+.+|++++|.|.+.+.. ...+.|+|.. .. | ......++.+. .++....|.|.++
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~----~~~~~~~L~I~~~ 78 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS----GSGTDFTLTISRV 78 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe----ccCCEEEEEECCC
Confidence 34457778899999999999998765 5789999742 21 1 00112344432 2234467999999
Q ss_pred ecCCCccEEEEEec
Q psy3718 121 ERGDSALFTCEIKS 134 (543)
Q Consensus 121 ~~~D~G~Y~C~a~n 134 (543)
+++|+|.|.|.+.+
T Consensus 79 ~~~Dsg~Y~Ca~~~ 92 (106)
T cd04980 79 EPEDAAVYYCQQYG 92 (106)
T ss_pred ChHHCEEEEEEEeC
Confidence 99999999999876
No 133
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.44 E-value=6.3e-07 Score=69.23 Aligned_cols=86 Identities=23% Similarity=0.341 Sum_probs=55.5
Q ss_pred eecceeEeecCCCeEEEEEeeccCCceEEEccCCeecC--------CC-CC----CceEEeeeecCCCceeeEEEEeeec
Q psy3718 56 IKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLD--------PK-SD----NRYTIREEILPNGVLSDLSIKRTER 122 (543)
Q Consensus 56 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~--------~~-~~----~~~~~~~~~~~~~~~~~L~i~~~~~ 122 (543)
+.+-...+.+|+++.|.|...-.+...+.|+|...... .. .. ..+.-+..+..+| +|.|.+++.
T Consensus 3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~ 79 (105)
T cd05774 3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQ 79 (105)
T ss_pred EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCc
Confidence 44555667899999999986544456999999632110 00 00 0111122233444 899999999
Q ss_pred CCCccEEEEEecccceeeeeee
Q psy3718 123 GDSALFTCEIKSQKISSQQMTY 144 (543)
Q Consensus 123 ~D~G~Y~C~a~n~~~sv~~~~~ 144 (543)
+|+|.|+|.+.+.....++...
T Consensus 80 ~D~G~Y~~~v~~~~~~~~~~~v 101 (105)
T cd05774 80 KDTGFYTLQTITTNFQVEQATV 101 (105)
T ss_pred ccCEEEEEEEEeCCccEEEEEE
Confidence 9999999999997654444443
No 134
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.44 E-value=4.3e-07 Score=68.26 Aligned_cols=35 Identities=23% Similarity=0.100 Sum_probs=30.7
Q ss_pred ceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCe
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPE 53 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~ 53 (543)
++|.|.+ |+|.|+|+|.|..|.. .++.|.|..+|.
T Consensus 47 s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~ 86 (88)
T cd05735 47 STLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPD 86 (88)
T ss_pred EEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCC
Confidence 5799987 9999999999999997 678999988763
No 135
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.43 E-value=4.2e-07 Score=67.76 Aligned_cols=35 Identities=14% Similarity=0.008 Sum_probs=32.0
Q ss_pred CceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCC
Q psy3718 18 RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPP 52 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p 52 (543)
.++|.|.+ |+|.|+|.|.|..|.. +++.|.|..||
T Consensus 46 ~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P 85 (85)
T cd05854 46 IGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP 85 (85)
T ss_pred EeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence 57999999 9999999999999987 67899999887
No 136
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.41 E-value=1.8e-06 Score=68.08 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=51.9
Q ss_pred ecceeEeecCCCeEEEEEeecc----CCceEEEc---------------cCCeecC---CCCCCceEEeeeecCCCceee
Q psy3718 57 KLRNQTSRRGEPSVLQCEAKGE----KPIGILWN---------------MNNKRLD---PKSDNRYTIREEILPNGVLSD 114 (543)
Q Consensus 57 ~~~~~~v~~g~~~~l~C~~~g~----p~~~i~W~---------------~~~~~i~---~~~~~~~~~~~~~~~~~~~~~ 114 (543)
.+..+.+..|++++|.|..... +...|.|. ++|.... ..-.+|+.+.... .....+
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~--~~~daS 81 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNP--SRKDGS 81 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCC--CcCeeE
Confidence 3556788999999999998764 34699993 2333321 0111244333221 123358
Q ss_pred EEEEeeecCCCccEEEEEecc
Q psy3718 115 LSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 115 L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
|.|.+++.+|.|+|+|.+.|.
T Consensus 82 I~I~nv~~sD~G~Y~C~v~n~ 102 (116)
T cd05879 82 IVIHNLDYTDNGTFTCDVKNP 102 (116)
T ss_pred EEEccCCcccCEEEEEEEEcC
Confidence 999999999999999999995
No 137
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.39 E-value=6.1e-06 Score=62.58 Aligned_cols=87 Identities=39% Similarity=0.716 Sum_probs=64.1
Q ss_pred CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEE
Q psy3718 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ 330 (543)
Q Consensus 251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 330 (543)
+|.++.+......++.|.|.++... .+.+..|.|.++...... + ..+.. .......+.+.+|.|++.|.++|+
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~--~~~~~~y~v~~~~~~~~~-~--~~~~~--~~~~~~~~~i~~l~p~~~Y~~~v~ 75 (93)
T cd00063 3 PPTNLRVTDVTSTSVTLSWTPPEDD--GGPITGYVVEYREKGSGD-W--KEVEV--TPGSETSYTLTGLKPGTEYEFRVR 75 (93)
T ss_pred CCCCcEEEEecCCEEEEEECCCCCC--CCcceeEEEEEeeCCCCC-C--EEeec--cCCcccEEEEccccCCCEEEEEEE
Confidence 5667788888889999999998654 356789999998765222 2 22211 013567899999999999999999
Q ss_pred EEeCCCCCCCCcce
Q psy3718 331 ALNKLGPGPMSEEV 344 (543)
Q Consensus 331 a~n~~G~s~~s~~~ 344 (543)
|.+..|.|.++...
T Consensus 76 a~~~~~~~~~s~~~ 89 (93)
T cd00063 76 AVNGGGESPPSESV 89 (93)
T ss_pred EECCCccCCCcccc
Confidence 99988877666533
No 138
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.39 E-value=5.6e-07 Score=65.29 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=36.6
Q ss_pred ccEEEeecCC------CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGFN------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~~------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
|.++|++... +..+..+++|.|.+ |+|.|+|.|.|..|.. .++.|.|
T Consensus 17 p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 17 PVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 6789987332 23345688999999 9999999999999986 5567765
No 139
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.38 E-value=9.4e-07 Score=64.05 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=36.2
Q ss_pred ccEEEeec-------CCCe-EEecCceEEEec----CCeEEEEEEecCCCCC--CCceEEE
Q psy3718 2 ENFFFYRG-------FNPR-ILLGRVLLPIGE----SSFHFDPELLNPSFNG--FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~-------~~~~-~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~--~s~~l~v 48 (543)
|.++|++. .+.+ ....+|.|.|.+ |+|.|+|.|.|..|.. .++.|.|
T Consensus 13 p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 13 PEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 57899874 2233 345678999999 9999999999999985 4567766
No 140
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.37 E-value=5e-07 Score=65.42 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=35.4
Q ss_pred ccEEEeecC------CCeEEe-cCc----eEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGF------NPRILL-GRV----LLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~------~~~~~~-~~g----~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
|.++|++.. ..++.+ .++ +|.|.+ |+|.|+|.|.|..|.. +++.|.|
T Consensus 13 P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 13 PQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 678998853 234443 232 699999 9999999999999997 5677765
No 141
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.37 E-value=1.3e-06 Score=66.55 Aligned_cols=74 Identities=26% Similarity=0.337 Sum_probs=50.0
Q ss_pred CCCeEEEEEeeccCCceEEEccCCeecCCCC------------CCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEe
Q psy3718 66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKS------------DNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK 133 (543)
Q Consensus 66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 133 (543)
|++++|.|.........+.|++......... ...+.-+.....+ .+|.|.+++.+|+|.|.|.+.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEEEE
Confidence 7899999999887778999998764432110 0111111111122 589999999999999999999
Q ss_pred cccceeeee
Q psy3718 134 SQKISSQQM 142 (543)
Q Consensus 134 n~~~sv~~~ 142 (543)
...+.....
T Consensus 78 ~~~~~~~~~ 86 (92)
T cd05741 78 STNGVTENA 86 (92)
T ss_pred cCCCcEEEE
Confidence 875543333
No 142
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.35 E-value=8.9e-07 Score=66.60 Aligned_cols=48 Identities=10% Similarity=0.024 Sum_probs=37.9
Q ss_pred ccEEEeecCC-----CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718 2 ENFFFYRGFN-----PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS 49 (543)
Q Consensus 2 ~~~~~~~~~~-----~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~ 49 (543)
|.++|++... .++...++.|.|.+ |+|.|+|.|.|..|.. .++.|.|+
T Consensus 31 P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 31 PVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYVQ 88 (88)
T ss_pred CEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEEC
Confidence 6789988532 24455677999999 9999999999999986 56777763
No 143
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.34 E-value=8.8e-07 Score=63.28 Aligned_cols=47 Identities=13% Similarity=-0.040 Sum_probs=36.5
Q ss_pred ccEEEeecC-----CCeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGF-----NPRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~-----~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
|.++|++.. +++....+++|.|.+ |+|.|+|.|.|..|.. .++.|.|
T Consensus 13 p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 13 PTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 578998853 234445678999999 9999999999999986 4566654
No 144
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.33 E-value=8e-07 Score=64.23 Aligned_cols=47 Identities=19% Similarity=0.103 Sum_probs=34.6
Q ss_pred ccEEEeecC------CCeEEe-cC--c--eEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGF------NPRILL-GR--V--LLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~------~~~~~~-~~--g--~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
|.++|++.. ..|+.+ .+ | +|.|.+ |+|.|+|.|.|..|.. .++.|.|
T Consensus 13 P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 13 PKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 678898732 233332 22 3 799999 9999999999999987 5677765
No 145
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.33 E-value=8.8e-07 Score=63.59 Aligned_cols=47 Identities=9% Similarity=-0.122 Sum_probs=36.5
Q ss_pred ccEEEeecC------CCeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGF------NPRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~------~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
|.++|++.. +.+.+..++.|.|.+ |+|.|+|.|.|..|.. +++.|.|
T Consensus 14 p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 14 PTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 678898743 233445678899988 9999999999999986 5677764
No 146
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.33 E-value=1.1e-06 Score=64.15 Aligned_cols=47 Identities=15% Similarity=0.016 Sum_probs=37.2
Q ss_pred ccEEEeecC--------CCeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGF--------NPRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~--------~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
|.++|++.. +.++.+.+++|.|.+ |+|.|+|.|.|..|.. +++.|.|
T Consensus 16 p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 16 PNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 568898732 125566789999999 9999999999999986 5577766
No 147
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.31 E-value=2.1e-06 Score=67.33 Aligned_cols=73 Identities=21% Similarity=0.378 Sum_probs=52.3
Q ss_pred EeecCCCeEEEEEeecc-CCceEEEccCCe--e---c----------CCCCCCceEEeeeecCCCceeeEEEEeeecCCC
Q psy3718 62 TSRRGEPSVLQCEAKGE-KPIGILWNMNNK--R---L----------DPKSDNRYTIREEILPNGVLSDLSIKRTERGDS 125 (543)
Q Consensus 62 ~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~--~---i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~ 125 (543)
.+.+|++++|.|.+.+. +...+.|+|... . + ......++.+... ......+|+|.+++.+|+
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~sL~I~~v~~~D~ 79 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRD--SSKSSFTLTISSLQPEDS 79 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEe--ccCCEEEEEECCCCHHHC
Confidence 57899999999999986 678999998432 1 1 1112345544432 122346899999999999
Q ss_pred ccEEEEEeccc
Q psy3718 126 ALFTCEIKSQK 136 (543)
Q Consensus 126 G~Y~C~a~n~~ 136 (543)
|.|.|.+.+..
T Consensus 80 G~Y~C~v~~~~ 90 (105)
T cd00099 80 AVYYCAVSLSG 90 (105)
T ss_pred EEEEEEEecCC
Confidence 99999999853
No 148
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.30 E-value=3.4e-06 Score=67.48 Aligned_cols=76 Identities=21% Similarity=0.365 Sum_probs=54.1
Q ss_pred ecceeEeecCCCeEEEEEeec--cCCceEEEccC--Ceec------C---------CCCCCceEEeeeecCCCceeeEEE
Q psy3718 57 KLRNQTSRRGEPSVLQCEAKG--EKPIGILWNMN--NKRL------D---------PKSDNRYTIREEILPNGVLSDLSI 117 (543)
Q Consensus 57 ~~~~~~v~~g~~~~l~C~~~g--~p~~~i~W~~~--~~~i------~---------~~~~~~~~~~~~~~~~~~~~~L~i 117 (543)
.|..+.+.+|++++|.|.+.+ .+...+.|+|. +... . .....++.+... .......|.|
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I 81 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKD--VGKSTSTLTI 81 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEE--CCCCEEEEEE
Confidence 456678899999999999987 67789999984 2211 0 011345554322 1114568999
Q ss_pred EeeecCCCccEEEEEec
Q psy3718 118 KRTERGDSALFTCEIKS 134 (543)
Q Consensus 118 ~~~~~~D~G~Y~C~a~n 134 (543)
.+++.+|+|.|.|.+..
T Consensus 82 ~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 82 QNLEKEDSATYYCAYWE 98 (116)
T ss_pred EECCHHHCEEEEEEEec
Confidence 99999999999999875
No 149
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.29 E-value=8.2e-07 Score=62.31 Aligned_cols=47 Identities=17% Similarity=0.018 Sum_probs=33.5
Q ss_pred CccEEEeecCCCeE-EecCceEEEec----CCeEEEEEEecCCCCC-CCceEE
Q psy3718 1 MENFFFYRGFNPRI-LLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLL 47 (543)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~ 47 (543)
.|.++||++..... ....+.|.|.+ |+|.|+|.|.|..|.. .+..|.
T Consensus 12 ~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~ 64 (67)
T cd05863 12 PPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLE 64 (67)
T ss_pred CCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEE
Confidence 37889998532211 12456999999 9999999999999974 344443
No 150
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.29 E-value=1.4e-06 Score=65.98 Aligned_cols=30 Identities=10% Similarity=-0.084 Sum_probs=26.9
Q ss_pred ceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
+.|.|.+ |+|.|+|.|.|..|.. +++.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V 89 (90)
T cd04974 55 EVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89 (90)
T ss_pred ceEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence 5899998 9999999999999997 6788887
No 151
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.28 E-value=4.5e-06 Score=66.24 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=49.3
Q ss_pred cceeEeecCCCeEEEEEeeccC----CceEEEccC----Cee--cC-------CCCCCceEEeeeec--CCCceeeEEEE
Q psy3718 58 LRNQTSRRGEPSVLQCEAKGEK----PIGILWNMN----NKR--LD-------PKSDNRYTIREEIL--PNGVLSDLSIK 118 (543)
Q Consensus 58 ~~~~~v~~g~~~~l~C~~~g~p----~~~i~W~~~----~~~--i~-------~~~~~~~~~~~~~~--~~~~~~~L~i~ 118 (543)
|..+.+.+|++++|.|.....+ ...|.|++. +.+ +. .....++.-+-... ......+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 5678889999999999987543 246999741 221 10 00111221111100 11233579999
Q ss_pred eeecCCCccEEEEEecc
Q psy3718 119 RTERGDSALFTCEIKSQ 135 (543)
Q Consensus 119 ~~~~~D~G~Y~C~a~n~ 135 (543)
+++.+|+|.|.|.+.|.
T Consensus 85 ~v~~~D~G~Y~C~v~~~ 101 (115)
T cd05880 85 QLQPTDNGTYTCQVKNP 101 (115)
T ss_pred eCChhhCEEEEEEEEeC
Confidence 99999999999999985
No 152
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.27 E-value=1.5e-06 Score=64.97 Aligned_cols=36 Identities=14% Similarity=-0.000 Sum_probs=32.4
Q ss_pred cCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCC
Q psy3718 17 GRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPP 52 (543)
Q Consensus 17 ~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p 52 (543)
.+|+|.|.+ |+|.|+|.|.|..|.. +++.|.|..||
T Consensus 45 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP 85 (85)
T cd04970 45 SNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP 85 (85)
T ss_pred ccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence 467999999 9999999999999986 67899999887
No 153
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.27 E-value=1.8e-06 Score=65.38 Aligned_cols=50 Identities=14% Similarity=-0.037 Sum_probs=38.2
Q ss_pred ccEEEeecCC-------------CeEE-ecCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCC
Q psy3718 2 ENFFFYRGFN-------------PRIL-LGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAP 51 (543)
Q Consensus 2 ~~~~~~~~~~-------------~~~~-~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~ 51 (543)
|.++|++... .++. ..+++|.|.+ |+|.|+|.|.|..|.. .++.|.|..+
T Consensus 16 p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 84 (90)
T cd05726 16 PAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDV 84 (90)
T ss_pred CEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEeec
Confidence 5678876432 2333 3478999999 9999999999999986 5688888543
No 154
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.26 E-value=1.6e-06 Score=62.22 Aligned_cols=47 Identities=9% Similarity=-0.068 Sum_probs=35.8
Q ss_pred ccEEEeecCC------CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGFN------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~~------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
|.+.|++..+ ......+++|.|.+ |+|.|+|.|.|..|.. .++.|.|
T Consensus 13 P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 13 PEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 6789987543 12234568999999 9999999999999986 4566665
No 155
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.26 E-value=1.6e-06 Score=62.71 Aligned_cols=47 Identities=11% Similarity=-0.137 Sum_probs=36.0
Q ss_pred ccEEEeecC------CCeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGF------NPRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~------~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
+.++|++.. ++..+..+++|.|.+ |+|.|+|.|.|..|.. .++.|.|
T Consensus 16 p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 16 PTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 467888743 233445678999999 9999999999999986 5567664
No 156
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.24 E-value=2.4e-06 Score=65.64 Aligned_cols=51 Identities=16% Similarity=-0.005 Sum_probs=39.2
Q ss_pred ccEEEeecCC-----CeEEe----cCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCC
Q psy3718 2 ENFFFYRGFN-----PRILL----GRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPP 52 (543)
Q Consensus 2 ~~~~~~~~~~-----~~~~~----~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p 52 (543)
++++|+++.+ .++.+ ..+.|.|.+ |+|.|+|.|.|..|.. +++.|.|..+|
T Consensus 30 p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P 94 (98)
T cd05762 30 ITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKP 94 (98)
T ss_pred CceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCC
Confidence 5678887432 23322 246899999 9999999999999997 67899998776
No 157
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.22 E-value=4.5e-06 Score=61.42 Aligned_cols=43 Identities=19% Similarity=0.032 Sum_probs=32.9
Q ss_pred ccEEEeecC-------------CCeE-EecCceEEEec----CCeEEEEEEecCCCCCCCc
Q psy3718 2 ENFFFYRGF-------------NPRI-LLGRVLLPIGE----SSFHFDPELLNPSFNGFPP 44 (543)
Q Consensus 2 ~~~~~~~~~-------------~~~~-~~~~g~L~I~~----D~G~Y~C~a~n~~g~~~s~ 44 (543)
|++.|++.. +.++ +..+++|.|.+ |+|.|+|.|.|..|...+.
T Consensus 13 P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~ 73 (79)
T cd05734 13 PTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASK 73 (79)
T ss_pred CEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCce
Confidence 678888742 2233 35678999999 9999999999999987543
No 158
>KOG3515|consensus
Probab=98.21 E-value=7.2e-05 Score=76.46 Aligned_cols=109 Identities=11% Similarity=0.062 Sum_probs=76.0
Q ss_pred CCeEEEEEEecCCCCC-CC--ceEEEeCCCeEEe-ecceeEeecCCCeEEEEEeeccCC-ceEEEccCCeecCCCCCCce
Q psy3718 26 SSFHFDPELLNPSFNG-FP--PLLLSSAPPEFEI-KLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRY 100 (543)
Q Consensus 26 D~G~Y~C~a~n~~g~~-~s--~~l~v~~~p~~~~-~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~~~~i~~~~~~~~ 100 (543)
|.|.|+|.|.|..... .+ ..|.|..+|.|.. ..-.....+++.....-.+.+.|. +++.|.+++-++.......+
T Consensus 372 ~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~ 451 (741)
T KOG3515|consen 372 DGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVV 451 (741)
T ss_pred cCceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceE
Confidence 9999999999988553 22 3555666665544 344455555665555555556654 89999999988876666555
Q ss_pred EEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718 101 TIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140 (543)
Q Consensus 101 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~ 140 (543)
.+- ..+ .-+.+.++..+|.|.|.|.|+|..|.++
T Consensus 452 ~v~----~~~--~~~s~~~v~~~d~g~y~~tatns~gg~~ 485 (741)
T KOG3515|consen 452 RVG----AGA--GLGSGVNVSRSDGGSYGLTATNSPGGAQ 485 (741)
T ss_pred Eee----ccc--cccccceeeeccCCcceeeeccCCCcee
Confidence 542 222 2355677999999999999999988754
No 159
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.20 E-value=7.9e-06 Score=59.35 Aligned_cols=66 Identities=26% Similarity=0.254 Sum_probs=46.2
Q ss_pred CeEEEEEeecc-CCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718 68 PSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK 136 (543)
Q Consensus 68 ~~~l~C~~~g~-p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 136 (543)
.+.|.|.+.|. |.+.|.|+++++++..... . ...........+.|.|..-...|...|+|.|.|..
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~--~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTGKST--V-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcCccc--c-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 36899999884 7899999999999864311 1 00010122345678887777777789999999963
No 160
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.20 E-value=3.3e-06 Score=61.41 Aligned_cols=47 Identities=9% Similarity=-0.080 Sum_probs=35.5
Q ss_pred ccEEEeecCC--------CeEE--ecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGFN--------PRIL--LGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~~--------~~~~--~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
|.++|++... .++. ..++.|.|.+ |+|.|+|.|.|..|.. .++.|.|
T Consensus 13 P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 13 PQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 6789988542 1222 2357899999 9999999999999986 5677776
No 161
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.19 E-value=3.2e-06 Score=64.82 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=51.7
Q ss_pred ecCCCeEEEEEeec-cCCceEEEccCCeecCCCCC-----------CceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718 64 RRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSD-----------NRYTIREEILPNGVLSDLSIKRTERGDSALFTCE 131 (543)
Q Consensus 64 ~~g~~~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 131 (543)
..|++++|.|.... .....+.|+|....+..... .++.-+-.. +....+|+|.+++.+|+|.|.|.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~--~~~~~sL~I~~~~~~DsG~Y~c~ 79 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNF--SQNDYSLQISNLKMEDAGSYRAE 79 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEe--cCCceeEEECCCchHHCEEEEEE
Confidence 46999999998865 45578999987543211110 111111111 22236899999999999999999
Q ss_pred Eecccceeeeeeee
Q psy3718 132 IKSQKISSQQMTYE 145 (543)
Q Consensus 132 a~n~~~sv~~~~~~ 145 (543)
+.+..+......+.
T Consensus 80 v~~~~~~~~~~~f~ 93 (97)
T cd05775 80 INTKNGVTITKEFT 93 (97)
T ss_pred EEcCCCCeEEEEEE
Confidence 99876554344333
No 162
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.18 E-value=2.4e-06 Score=65.14 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=33.0
Q ss_pred ccEEEeecCCC-------eEEe-cC----ceEEEec----CCeEEEEEEecCC-CCC-CCceEEE
Q psy3718 2 ENFFFYRGFNP-------RILL-GR----VLLPIGE----SSFHFDPELLNPS-FNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~~~-------~~~~-~~----g~L~I~~----D~G~Y~C~a~n~~-g~~-~s~~l~v 48 (543)
|+++|++.++. ++.+ .+ ++|.|.+ |+|.|+|.|.|.+ |.. +++.|.|
T Consensus 31 p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 31 KDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred CEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 48899873332 3322 22 5899999 9999999999997 554 5566665
No 163
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.18 E-value=2.7e-06 Score=60.63 Aligned_cols=45 Identities=9% Similarity=-0.037 Sum_probs=33.8
Q ss_pred ccEEEeecC------CCeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceE
Q psy3718 2 ENFFFYRGF------NPRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLL 46 (543)
Q Consensus 2 ~~~~~~~~~------~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l 46 (543)
|.++|+++. .++.+..++.|.|.+ |+|.|+|.|.|..|.. .++.|
T Consensus 13 p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 13 PTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 568898742 233345578999999 9999999999999986 34444
No 164
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.18 E-value=3.4e-06 Score=64.75 Aligned_cols=70 Identities=23% Similarity=0.394 Sum_probs=47.1
Q ss_pred ecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCcee---eEEEEeeecCCCccEEEEEeccc
Q psy3718 64 RRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLS---DLSIKRTERGDSALFTCEIKSQK 136 (543)
Q Consensus 64 ~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a~n~~ 136 (543)
..|+.++|.|.+.|. |. ++|.|++||..+..... ..... ...++... .|.|....-.|.|.|+|.|.+..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~-~~~~~--~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~ 85 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT-TTPPV--PNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHES 85 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee-ccccc--cCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCC
Confidence 579999999999997 64 79999999999853321 01111 11233323 35554444459999999999963
No 165
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.18 E-value=1.2e-05 Score=64.14 Aligned_cols=77 Identities=18% Similarity=0.407 Sum_probs=49.5
Q ss_pred ecceeEeecCCCeEEEEEeeccC----CceEEEccCCe------ec-CCC-------CCCce----EEeeeecCCCceee
Q psy3718 57 KLRNQTSRRGEPSVLQCEAKGEK----PIGILWNMNNK------RL-DPK-------SDNRY----TIREEILPNGVLSD 114 (543)
Q Consensus 57 ~~~~~~v~~g~~~~l~C~~~g~p----~~~i~W~~~~~------~i-~~~-------~~~~~----~~~~~~~~~~~~~~ 114 (543)
.|..+.+.+|++++|.|...... ...+.|++... .+ ... ...++ .+... ......+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~~s 81 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGN--PSRKDAS 81 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecC--CcCCeeE
Confidence 36677889999999999986542 25799976321 00 000 01122 11111 1122367
Q ss_pred EEEEeeecCCCccEEEEEecc
Q psy3718 115 LSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 115 L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
|+|.+++.+|+|.|.|.+.|.
T Consensus 82 L~I~~v~~~D~G~Y~C~v~~~ 102 (116)
T cd05715 82 IVIHNLQFTDNGTYTCDVKNP 102 (116)
T ss_pred EEEeeCCcccCEEEEEEEEeC
Confidence 999999999999999999985
No 166
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.17 E-value=8.1e-06 Score=63.02 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=44.2
Q ss_pred CCeEEEEEeeccC---CceEEEccCCee-------c--------CCCCCCceEEeeeecCCCceeeEEEEeeecCCCccE
Q psy3718 67 EPSVLQCEAKGEK---PIGILWNMNNKR-------L--------DPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALF 128 (543)
Q Consensus 67 ~~~~l~C~~~g~p---~~~i~W~~~~~~-------i--------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 128 (543)
++++|.|.....+ ...|.|+|.... . ......|..+... .-...+|.|.+++.+|+|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~sL~I~~v~~~D~G~Y 77 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNS---SLEDATISISNLRLEDEGNY 77 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCC---CCCceEEEEccCCcccCEEE
Confidence 5789999998764 458999986431 0 0001122222111 00345899999999999999
Q ss_pred EEEEec-ccce
Q psy3718 129 TCEIKS-QKIS 138 (543)
Q Consensus 129 ~C~a~n-~~~s 138 (543)
.|.+.+ ..|+
T Consensus 78 ~C~v~~~~~g~ 88 (98)
T cd05718 78 ICEFATFPQGN 88 (98)
T ss_pred EEEEEeCCCCc
Confidence 999875 4444
No 167
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.17 E-value=6.1e-06 Score=63.62 Aligned_cols=69 Identities=16% Similarity=0.317 Sum_probs=48.7
Q ss_pred EeecCCCeEEEEEeecc--CCceEEEccCC--eecC----------CCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718 62 TSRRGEPSVLQCEAKGE--KPIGILWNMNN--KRLD----------PKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL 127 (543)
Q Consensus 62 ~v~~g~~~~l~C~~~g~--p~~~i~W~~~~--~~i~----------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 127 (543)
.+.+|++++|.|...+. ....+.|+|.. .... .....++.+. .++...+|.|.+++++|+|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~----~~~~~~~L~I~~~~~~Dsg~ 77 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGS----KSGNTASLTISGAQTEDEAD 77 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEE----ccCCEEEEEECCCChhhCEE
Confidence 57899999999998775 55789998732 2211 0112345443 23345689999999999999
Q ss_pred EEEEEec
Q psy3718 128 FTCEIKS 134 (543)
Q Consensus 128 Y~C~a~n 134 (543)
|.|.+.+
T Consensus 78 Y~C~~~~ 84 (98)
T cd04984 78 YYCQVWD 84 (98)
T ss_pred EEEEEcc
Confidence 9999876
No 168
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.17 E-value=7.7e-06 Score=65.35 Aligned_cols=78 Identities=18% Similarity=0.329 Sum_probs=54.9
Q ss_pred EeecceeEeecCCCeEEEEEeecc-CCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718 55 EIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTE 121 (543)
Q Consensus 55 ~~~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 121 (543)
...|..+.+.+|++++|.|..... ....+.|+|- +..+ ......|+.+... ......+|.|.+++
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~--~~~~~~sL~I~~~~ 80 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQ--KAQKSISLTISALQ 80 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEe--ccCCEEEEEECCCC
Confidence 445677889999999999998764 4578999973 2211 0112345555422 12334689999999
Q ss_pred cCCCccEEEEEec
Q psy3718 122 RGDSALFTCEIKS 134 (543)
Q Consensus 122 ~~D~G~Y~C~a~n 134 (543)
.+|+|.|.|.+..
T Consensus 81 ~~Dsg~Y~C~~~~ 93 (116)
T cd07706 81 LEDSAKYFCALST 93 (116)
T ss_pred HHHCEEEEEEEEC
Confidence 9999999999986
No 169
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.16 E-value=1.1e-05 Score=62.52 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=44.2
Q ss_pred CCCeEEEEEeecc---CCceEEEccCCe--ec---------CC----CCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718 66 GEPSVLQCEAKGE---KPIGILWNMNNK--RL---------DP----KSDNRYTIREEILPNGVLSDLSIKRTERGDSAL 127 (543)
Q Consensus 66 g~~~~l~C~~~g~---p~~~i~W~~~~~--~i---------~~----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 127 (543)
|++++|.|..... ....+.|++... .+ .. .-..|+.+.... ......+|.|.+++.+|+|.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~sL~I~~v~~~D~G~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDA-IAEGSVALRIHNVRASDEGL 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeeccc-ccCCcEEEEEEcCChhhCEE
Confidence 7899999998632 224788887542 11 00 001222221111 11233689999999999999
Q ss_pred EEEEEecccce
Q psy3718 128 FTCEIKSQKIS 138 (543)
Q Consensus 128 Y~C~a~n~~~s 138 (543)
|.|.+.|..+.
T Consensus 80 Y~C~v~~~~~~ 90 (100)
T cd05713 80 YTCFFQSDGFY 90 (100)
T ss_pred EEEEEecCCcE
Confidence 99999986443
No 170
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.16 E-value=3.8e-06 Score=59.70 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=33.5
Q ss_pred CccEEEeecCC----CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEE
Q psy3718 1 MENFFFYRGFN----PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLL 47 (543)
Q Consensus 1 ~~~~~~~~~~~----~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~ 47 (543)
.|.++|++... +.....++.|.|.+ |+|.|+|.|.|..|.. .+..+.
T Consensus 12 ~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~ 67 (70)
T cd05864 12 PPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQ 67 (70)
T ss_pred CCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEE
Confidence 46789988432 12223456899999 9999999999999976 444443
No 171
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.14 E-value=1.6e-05 Score=63.33 Aligned_cols=79 Identities=19% Similarity=0.345 Sum_probs=54.2
Q ss_pred EeecceeEeecCCCeEEEEEee-ccCCceEEEccCCe-----ecC------------CCCCCceEEeeeecCCCceeeEE
Q psy3718 55 EIKLRNQTSRRGEPSVLQCEAK-GEKPIGILWNMNNK-----RLD------------PKSDNRYTIREEILPNGVLSDLS 116 (543)
Q Consensus 55 ~~~~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~-----~i~------------~~~~~~~~~~~~~~~~~~~~~L~ 116 (543)
...|..+.+.+|+++.|.|... ......+.|++... .+. .....++.+... ......+|.
T Consensus 5 t~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~sL~ 82 (114)
T PF07686_consen 5 TQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGN--GSQNNFSLT 82 (114)
T ss_dssp EEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEE--TTTTEEEEE
T ss_pred EEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeec--ccCCeEEEE
Confidence 3457778999999999999999 55667999998332 111 000122222211 122346799
Q ss_pred EEeeecCCCccEEEEEecc
Q psy3718 117 IKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 117 i~~~~~~D~G~Y~C~a~n~ 135 (543)
|.+++.+|+|.|.|.+...
T Consensus 83 i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 83 IKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp ESSESGGGEEEEEEEEEES
T ss_pred ECCCCcCcCEEEEEEEEEC
Confidence 9999999999999999885
No 172
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.14 E-value=4.8e-06 Score=63.22 Aligned_cols=42 Identities=12% Similarity=-0.101 Sum_probs=33.8
Q ss_pred ccEEEeecC------CCeEEecCceEEEec-----CCeEEEEEEecCCCCCCC
Q psy3718 2 ENFFFYRGF------NPRILLGRVLLPIGE-----SSFHFDPELLNPSFNGFP 43 (543)
Q Consensus 2 ~~~~~~~~~------~~~~~~~~g~L~I~~-----D~G~Y~C~a~n~~g~~~s 43 (543)
|+++|++.. +.++.+.+|.|.|.+ |+|.|+|.|.|..|...+
T Consensus 34 P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 86 (93)
T cd05849 34 PIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRS 86 (93)
T ss_pred CEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence 678998743 245567789999975 999999999999998744
No 173
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.13 E-value=1.2e-05 Score=59.45 Aligned_cols=65 Identities=22% Similarity=0.317 Sum_probs=42.1
Q ss_pred CeEEEEEeecc-CCceEEEccCCeecCCCCCCceEEeeeecCCC---ceeeEEEEeeecCCCccEEEEEecccc
Q psy3718 68 PSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPNG---VLSDLSIKRTERGDSALFTCEIKSQKI 137 (543)
Q Consensus 68 ~~~l~C~~~g~-p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 137 (543)
.+.|.|.+.|. |.+.|.|+++++++... .... ....++ ..+.|.+......|.+.|+|.|.+...
T Consensus 1 ~~~L~C~~~~~~P~~~v~W~~~~~~l~~~--~~~~---~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l 69 (82)
T cd05761 1 EVELTCTSSGSKPAATIRWFKGDKELKGV--KLKE---EDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL 69 (82)
T ss_pred CEEEEEEecCcCcCCeEEEEECCEEccCc--eeeE---ecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence 36899999875 88999999999998521 1111 111122 233455544445556799999999643
No 174
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.13 E-value=4.7e-06 Score=59.69 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=34.2
Q ss_pred ccEEEeecC-----CCeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEE
Q psy3718 2 ENFFFYRGF-----NPRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLL 47 (543)
Q Consensus 2 ~~~~~~~~~-----~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~ 47 (543)
|.++|++.. +.+....+++|.|.+ |+|.|+|.|.|..|.. .+..+.
T Consensus 13 p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~ 68 (71)
T cd04976 13 PEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFT 68 (71)
T ss_pred CEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEE
Confidence 578898742 234456678999999 9999999999999874 333333
No 175
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.12 E-value=5.5e-06 Score=60.29 Aligned_cols=47 Identities=9% Similarity=-0.101 Sum_probs=35.2
Q ss_pred ccEEEeecCC--------CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGFN--------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~~--------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
|.+.|++... ......++.|.|.+ |+|.|+|.|.|..|.. +++.|.|
T Consensus 16 P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 16 PSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 5788886321 12234556899888 9999999999999997 6778776
No 176
>KOG4258|consensus
Probab=98.11 E-value=2.3e-05 Score=79.32 Aligned_cols=178 Identities=22% Similarity=0.369 Sum_probs=116.9
Q ss_pred CccceEEEEEEEEEcC--CCCC--CCCccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEE
Q psy3718 214 EIIWKTYHIRIVAENE--IGSS--EPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYK 289 (543)
Q Consensus 214 ~~~w~~y~~~v~a~n~--~G~~--~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~ 289 (543)
+-.||.|-|.|.+... .+.. ..|....++|....|. +|..+-....++++|.|.|.+|... +|.++.|.|.|.
T Consensus 573 LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Ps-pPl~~ls~snsSsqi~l~W~pP~~p--NG~lt~Ylv~we 649 (1025)
T KOG4258|consen 573 LKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPS-PPLDVLSKSNSSSQILLKWKPPSQP--NGNLTHYLVVWE 649 (1025)
T ss_pred CCccceeEEEEeeeehhhhccccccccceEEEEecCCCCC-CcchhhhccCcchheeEEecCCCCC--CCceeEEEEEEE
Confidence 3456999999988732 2221 2355667889888885 7777766777788999999999887 899999999887
Q ss_pred EcCCCC--------------------------Cce-----------------E------------------------EEE
Q psy3718 290 ETSTDK--------------------------PFL-----------------F------------------------ETV 302 (543)
Q Consensus 290 ~~~~~~--------------------------~~~-----------------~------------------------~~~ 302 (543)
....+. +.. + ..+
T Consensus 650 r~~~~~yl~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e~~~~~Cc~c~~~~~~~~~e~eea~~~~~FEd~L~n~i~v 729 (1025)
T KOG4258|consen 650 RQAEDGYLEQRNYCHKGLKLPIRADLPSFDSEDMDPLLEMEGHTGPCCSCPPTESYPQYEDEEASEQKTFEDFLHNAIFV 729 (1025)
T ss_pred eccCCchHHHhccccccccccccccCCCCchhhcchhhhhccCCCCCCCCCcccccCchhhHHHHHHHHHhhhccceeee
Confidence 543210 000 0 000
Q ss_pred e-------------------------------------------eeccCCceeEEEECCCCCCCEEEEEEEEEeCCCC--
Q psy3718 303 D-------------------------------------------FSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGP-- 337 (543)
Q Consensus 303 ~-------------------------------------------~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~-- 337 (543)
. ......+..++.+.+|+.++.|.+.++|.|..+.
T Consensus 730 pr~~~~krk~l~~~~n~t~~~~~~~~~~p~t~~~t~p~ei~e~~p~~~n~n~~~~vi~~Lrh~tlY~i~l~aCnh~~~~~ 809 (1025)
T KOG4258|consen 730 PRRPDRKRKSLDDVENCTRLAPTRKAEEPTTPPTTAPTEIEEPKPRLENGNKESYVISGLRHFTLYRIDLQACNHATPKC 809 (1025)
T ss_pred cccCcccccccccccceeeccccccccCCCCCCCCCCccccccCcccccccchhhhhhccccchhhhhhHhhhccccccc
Confidence 0 0000123346788999999999999999998874
Q ss_pred --CCCCcceeeeccCCC-CCCCCCCcEEEEe-ccCeEEEEccCCCCCCCCCceEEEEEEEEeCC
Q psy3718 338 --GPMSEEVKQYTAEGT-PEQPPQDNTCTTL-TSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397 (543)
Q Consensus 338 --s~~s~~~~~~t~~~~-p~~~P~~~~~~~~-~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~ 397 (543)
|. +..+...|.... ....|..+..... +.+.+.|.|.+| .+++|.|.+|.|+|+...
T Consensus 810 ~cS~-a~~v~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~EP--~~pNGli~~Y~Vk~r~~~ 870 (1025)
T KOG4258|consen 810 GCSH-AAFVFARTMPTMGADDIPGPVTWECHIEMNSVILRWLEP--KEPNGLILNYEVKYRRNG 870 (1025)
T ss_pred ccch-hhhhhhccccccccccCCCceeEecccCcceEEEecCCC--CCCCccEEEEEEEEeecc
Confidence 32 222333333221 1112333444444 778999999988 478999999999998543
No 177
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.11 E-value=4.7e-06 Score=60.45 Aligned_cols=47 Identities=11% Similarity=-0.097 Sum_probs=34.4
Q ss_pred ccEEEeecCC-------CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGFN-------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~~-------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
|.+.|++.++ +.....+++|.|.+ |+|.|+|.|.|..|.. .++.|.|
T Consensus 16 p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 16 PAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 5678876432 23345678999998 9999999999999985 4455543
No 178
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.11 E-value=5.4e-06 Score=62.75 Aligned_cols=30 Identities=10% Similarity=-0.105 Sum_probs=26.6
Q ss_pred ceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
+.|.|.+ |+|.|+|.|.|..|.. .++.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 89 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence 4799999 9999999999999986 5678876
No 179
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.10 E-value=4.9e-06 Score=62.16 Aligned_cols=47 Identities=15% Similarity=-0.046 Sum_probs=36.8
Q ss_pred ccEEEeecC-----CCeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGF-----NPRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~-----~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
|.++|++.. +.++...++.|.|.+ |+|.|+|.|.|..|.. +++.|.|
T Consensus 29 p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 29 PAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred CEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 568887742 245566788999999 9999999999999986 5566654
No 180
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.10 E-value=5.2e-06 Score=61.48 Aligned_cols=32 Identities=13% Similarity=-0.280 Sum_probs=26.5
Q ss_pred cCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 17 GRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 17 ~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
..++|.|.+ |+|.|+|.|.|..|.. .++.|.|
T Consensus 45 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 81 (81)
T cd05765 45 NIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81 (81)
T ss_pred cccEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence 346899999 9999999999999986 5566654
No 181
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.10 E-value=1.4e-05 Score=62.59 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=46.2
Q ss_pred cCCCeEEEEEeeccC------------CceEEEccC--Ce-e--c---------CCCCCCceEEeeeecCCCceeeEEEE
Q psy3718 65 RGEPSVLQCEAKGEK------------PIGILWNMN--NK-R--L---------DPKSDNRYTIREEILPNGVLSDLSIK 118 (543)
Q Consensus 65 ~g~~~~l~C~~~g~p------------~~~i~W~~~--~~-~--i---------~~~~~~~~~~~~~~~~~~~~~~L~i~ 118 (543)
.|++++|.|...... .+.|.|+|- +. + + ...-.+|+.+.... ......+|.|.
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~-~~~~~asL~I~ 79 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYP-AIPSDATLEIT 79 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccC-CCCCCcEEEEe
Confidence 489999999987643 469999974 21 1 1 00111244432210 12234689999
Q ss_pred eeecCCCccEEEEEecc
Q psy3718 119 RTERGDSALFTCEIKSQ 135 (543)
Q Consensus 119 ~~~~~D~G~Y~C~a~n~ 135 (543)
+++.+|+|+|.|.+.+.
T Consensus 80 nl~~sDsG~Y~C~V~~g 96 (112)
T cd05900 80 ELRSNDSGTYRCEVMHG 96 (112)
T ss_pred ecccccCEEEEEEEecC
Confidence 99999999999999875
No 182
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.09 E-value=4.9e-06 Score=63.24 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=35.7
Q ss_pred ccEEEeecCC---------CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGFN---------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~~---------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
++++||+... .|+...++.|.|.+ |+|.|+|.++|..|.. .++.|.|
T Consensus 34 ~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v 94 (94)
T cd05756 34 LNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV 94 (94)
T ss_pred ceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence 5789998543 33344578999999 9999999999998886 4456654
No 183
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.09 E-value=6.2e-06 Score=63.55 Aligned_cols=47 Identities=19% Similarity=0.052 Sum_probs=34.5
Q ss_pred ccEEEeecCC------------CeEEec----CceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGFN------------PRILLG----RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~~------------~~~~~~----~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
|.++|++..+ .|+.+. +++|.|.+ |+|.|+|.|.|..|.. .++.|.|
T Consensus 31 p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 31 PEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred CeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence 6789987432 233322 35899999 9999999999999986 5566654
No 184
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.09 E-value=6e-06 Score=59.90 Aligned_cols=47 Identities=15% Similarity=0.034 Sum_probs=33.4
Q ss_pred ccEEEeecC------CCeEE-ecC--c--eEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGF------NPRIL-LGR--V--LLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~------~~~~~-~~~--g--~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
|.++|++.. ..++. ..+ | +|.|.+ |+|.|+|.|.|..|.. +++.|.|
T Consensus 13 P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 13 PQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 567888633 12332 222 2 699999 9999999999999986 5567764
No 185
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.09 E-value=4.8e-06 Score=59.20 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=33.7
Q ss_pred ccEEEeecCC-----CeEEecCceEEEec--CCeEEEEEEecCCCCC-CCceE
Q psy3718 2 ENFFFYRGFN-----PRILLGRVLLPIGE--SSFHFDPELLNPSFNG-FPPLL 46 (543)
Q Consensus 2 ~~~~~~~~~~-----~~~~~~~g~L~I~~--D~G~Y~C~a~n~~g~~-~s~~l 46 (543)
|.++|++... .++...++.|.|.+ |+|.|+|.|.|..|.. +++.|
T Consensus 16 P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 16 PYVKWMKGGEELTKEDEMPVGRNVLELTNIYESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CEEEEEECCEECCCccceecCccEEEEeccccCeeEEEEEEeCCCEEEEEEEE
Confidence 6789987542 23334456899999 9999999999999985 44554
No 186
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.08 E-value=1.3e-05 Score=60.99 Aligned_cols=75 Identities=12% Similarity=0.156 Sum_probs=51.3
Q ss_pred CeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718 52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE 131 (543)
Q Consensus 52 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 131 (543)
|.+...| ...|.+|++++|.|.... +...+.|+|+|....... ... ....+....+.|.+++++|+|.|.|.
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~-----~~~-~~~~~~~a~f~I~~~~~~~~G~Y~C~ 73 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLH-----LYE-KHHGGFQASFPLGPVTPAHAGTYRCY 73 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCcee-----ccc-ccCCeEEEEEEecCCCcccCEEEEEE
Confidence 4444433 456779999999998765 556899999987643210 000 01123345799999999999999999
Q ss_pred Eec
Q psy3718 132 IKS 134 (543)
Q Consensus 132 a~n 134 (543)
...
T Consensus 74 ~~~ 76 (94)
T cd05711 74 GSY 76 (94)
T ss_pred EEC
Confidence 754
No 187
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.08 E-value=6.9e-06 Score=59.54 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=34.4
Q ss_pred CccEEEeecC-----CCeEEec----CceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 1 MENFFFYRGF-----NPRILLG----RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 1 ~~~~~~~~~~-----~~~~~~~----~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
.|.++|++.. +.++.+. .+.|.|.+ |+|.|+|.|.|..|.. .++.|.|
T Consensus 13 ~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 13 TPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 3678998742 2333322 35899999 9999999999999986 4556654
No 188
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.06 E-value=8.4e-06 Score=62.14 Aligned_cols=42 Identities=17% Similarity=-0.016 Sum_probs=32.9
Q ss_pred ccEEEeecC-------CCeEEecCceEEEec-----CCeEEEEEEecCCCCCCC
Q psy3718 2 ENFFFYRGF-------NPRILLGRVLLPIGE-----SSFHFDPELLNPSFNGFP 43 (543)
Q Consensus 2 ~~~~~~~~~-------~~~~~~~~g~L~I~~-----D~G~Y~C~a~n~~g~~~s 43 (543)
|.++|++.. +.++.+.+|+|.|.+ |+|.|+|.|.|..|...+
T Consensus 34 P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 34 PTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred CEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 678898742 234456788999976 999999999999998744
No 189
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.06 E-value=2.7e-05 Score=59.10 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=52.4
Q ss_pred eEEeecceeEeecCCCeEEEEEeec-cCCce--EEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718 53 EFEIKLRNQTSRRGEPSVLQCEAKG-EKPIG--ILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT 129 (543)
Q Consensus 53 ~~~~~~~~~~v~~g~~~~l~C~~~g-~p~~~--i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 129 (543)
.+.+.+....+.+|+.++|.|.+.| .|.+. |.|+|++..+.... +.. ..........+|.+.....+|.-.|+
T Consensus 3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~---~~~-~~~~~~~~~stlt~~~~r~D~g~~~s 78 (100)
T cd05755 3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQP---FGD-NTKSPVNAPATITITVDREDHGANFS 78 (100)
T ss_pred eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccce---ecc-ccCCCceeEEEEEEecchhhCCcEEE
Confidence 3455566666789999999999988 46665 79999999985321 110 00011223456777654444445999
Q ss_pred EEEeccc
Q psy3718 130 CEIKSQK 136 (543)
Q Consensus 130 C~a~n~~ 136 (543)
|.|.+..
T Consensus 79 C~A~l~l 85 (100)
T cd05755 79 CETELDL 85 (100)
T ss_pred EEEEecc
Confidence 9999963
No 190
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.06 E-value=6e-06 Score=59.33 Aligned_cols=47 Identities=9% Similarity=-0.128 Sum_probs=34.2
Q ss_pred ccEEEeecCCC----eEE--ecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGFNP----RIL--LGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~~~----~~~--~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
|.++|++.... +.. ..++.|.|.+ |+|.|+|.|.|..|.. .+..|.|
T Consensus 13 p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 13 PEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 67899875431 122 2356999999 9999999999999976 4456655
No 191
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.06 E-value=9.4e-06 Score=61.89 Aligned_cols=43 Identities=12% Similarity=-0.035 Sum_probs=33.1
Q ss_pred ccEEEeecC-------CCeEEecCceEEEec-----CCeEEEEEEecCCCCCCCc
Q psy3718 2 ENFFFYRGF-------NPRILLGRVLLPIGE-----SSFHFDPELLNPSFNGFPP 44 (543)
Q Consensus 2 ~~~~~~~~~-------~~~~~~~~g~L~I~~-----D~G~Y~C~a~n~~g~~~s~ 44 (543)
+.++|++.. +.++.+.+|+|.|.+ |+|.|+|.|+|..|...+.
T Consensus 34 p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~ 88 (94)
T cd05850 34 ATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSR 88 (94)
T ss_pred CEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEE
Confidence 567887632 235556788999976 9999999999999987553
No 192
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.05 E-value=1.4e-05 Score=61.60 Aligned_cols=73 Identities=11% Similarity=0.358 Sum_probs=51.0
Q ss_pred eEeecCCCeEEEEEeec-cCCceEEEccCCee-----c------CCCCCCceEEeeeecCCCceeeEEEEeeecCCCccE
Q psy3718 61 QTSRRGEPSVLQCEAKG-EKPIGILWNMNNKR-----L------DPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALF 128 (543)
Q Consensus 61 ~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~-----i------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 128 (543)
+.+.+|++++|.|.... .....+.|+|.... + ......++.+... ......+|.|.+++.+|+|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y 79 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDD--PDNGVFTVTLNQLRKEDAGWY 79 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEec--CCCCEEEEEEcCCCHHHCEEE
Confidence 45789999999999875 35578899985421 1 0112345554322 234456899999999999999
Q ss_pred EEEEecc
Q psy3718 129 TCEIKSQ 135 (543)
Q Consensus 129 ~C~a~n~ 135 (543)
.|.+...
T Consensus 80 ~C~~~~~ 86 (98)
T cd05716 80 WCGVGDD 86 (98)
T ss_pred EEEcccC
Confidence 9998774
No 193
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.03 E-value=9.7e-06 Score=59.55 Aligned_cols=46 Identities=11% Similarity=-0.085 Sum_probs=34.3
Q ss_pred ccEEEeecCC-----CeEEecCceEEEec----CCeEEEEEEecCCCCCC-CceEE
Q psy3718 2 ENFFFYRGFN-----PRILLGRVLLPIGE----SSFHFDPELLNPSFNGF-PPLLL 47 (543)
Q Consensus 2 ~~~~~~~~~~-----~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~~-s~~l~ 47 (543)
++++|++... .++.+.+++|.|.+ |+|.|+|.|.|..|... ...|.
T Consensus 23 ~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~ 78 (79)
T cd04973 23 QSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN 78 (79)
T ss_pred ceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence 4688987432 35566678999999 99999999999988752 34444
No 194
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.03 E-value=1.2e-05 Score=63.06 Aligned_cols=34 Identities=21% Similarity=0.136 Sum_probs=29.7
Q ss_pred ceEEEec-----CCeEEEEEEecCCCCC-CCceEEEeCCC
Q psy3718 19 VLLPIGE-----SSFHFDPELLNPSFNG-FPPLLLSSAPP 52 (543)
Q Consensus 19 g~L~I~~-----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p 52 (543)
+.|.|.+ |.|.|+|.|.|..|.. .+..|.|+.+|
T Consensus 69 s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 69 SILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred eEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 5799976 9999999999999997 56789888877
No 195
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.03 E-value=1.1e-05 Score=58.58 Aligned_cols=40 Identities=8% Similarity=-0.094 Sum_probs=30.2
Q ss_pred ccEEEeecCC-----CeEE---------ecCceEEEec----CCeEEEEEEecCCCCC
Q psy3718 2 ENFFFYRGFN-----PRIL---------LGRVLLPIGE----SSFHFDPELLNPSFNG 41 (543)
Q Consensus 2 ~~~~~~~~~~-----~~~~---------~~~g~L~I~~----D~G~Y~C~a~n~~g~~ 41 (543)
|.++|+++.. ++.. ...+.|.|.+ |+|.|+|+|+|..|+.
T Consensus 13 Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~ 70 (79)
T cd05855 13 PTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED 70 (79)
T ss_pred CceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc
Confidence 6789988442 2211 1246899999 9999999999999985
No 196
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.02 E-value=1.1e-05 Score=60.82 Aligned_cols=42 Identities=10% Similarity=0.012 Sum_probs=31.0
Q ss_pred cEEEeecCC------CeEE-ecCc---eEEEec----CCeEEEEEEecCCCCCCCc
Q psy3718 3 NFFFYRGFN------PRIL-LGRV---LLPIGE----SSFHFDPELLNPSFNGFPP 44 (543)
Q Consensus 3 ~~~~~~~~~------~~~~-~~~g---~L~I~~----D~G~Y~C~a~n~~g~~~s~ 44 (543)
+++|++.++ .++. ..+| +|.|.+ |+|.|+|.|+|..|....+
T Consensus 30 ~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 85 (92)
T cd05866 30 SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA 85 (92)
T ss_pred eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEE
Confidence 578886433 2333 3445 899999 9999999999999986443
No 197
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.02 E-value=1.2e-05 Score=58.51 Aligned_cols=47 Identities=17% Similarity=0.069 Sum_probs=34.0
Q ss_pred CccEEEeecC-------CCeEE--ecCceEEEec--------CCeEEEEEEecCCCCCCCceEE
Q psy3718 1 MENFFFYRGF-------NPRIL--LGRVLLPIGE--------SSFHFDPELLNPSFNGFPPLLL 47 (543)
Q Consensus 1 ~~~~~~~~~~-------~~~~~--~~~g~L~I~~--------D~G~Y~C~a~n~~g~~~s~~l~ 47 (543)
.|.++|++.. +.++. ..+|+|.|.+ |+|.|+|.|.|..|...+..+.
T Consensus 12 ~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~ 75 (77)
T cd05875 12 VPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKIL 75 (77)
T ss_pred CCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEE
Confidence 4788998843 23333 3578999974 6999999999999987554433
No 198
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.02 E-value=1.3e-05 Score=58.47 Aligned_cols=47 Identities=13% Similarity=0.026 Sum_probs=33.5
Q ss_pred CccEEEeecCC-------CeEE--ecCceEEEec--------CCeEEEEEEecCCCCCCCceEE
Q psy3718 1 MENFFFYRGFN-------PRIL--LGRVLLPIGE--------SSFHFDPELLNPSFNGFPPLLL 47 (543)
Q Consensus 1 ~~~~~~~~~~~-------~~~~--~~~g~L~I~~--------D~G~Y~C~a~n~~g~~~s~~l~ 47 (543)
.|.++|++... .++. ..+|+|.|.. |+|.|+|.|.|..|...+..+.
T Consensus 12 ~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~ 75 (77)
T cd05874 12 PPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIV 75 (77)
T ss_pred CCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEE
Confidence 37789987432 2222 2478999976 6799999999999987554443
No 199
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.01 E-value=8.8e-06 Score=59.39 Aligned_cols=47 Identities=9% Similarity=-0.083 Sum_probs=36.0
Q ss_pred ccEEEeecCC--------CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGFN--------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~~--------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
|.+.|++... .+....++.|.|.+ |+|.|+|.|.|..|.. +++.|.|
T Consensus 16 p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 16 PTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 5688876321 13445678999999 9999999999999986 5677776
No 200
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.01 E-value=9.8e-06 Score=63.54 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=46.3
Q ss_pred cCCCeEEEEEeeccC------CceEEEccCC---e---ecCCCCCCceEE------eeee-cCCCceeeEEEEeeecCCC
Q psy3718 65 RGEPSVLQCEAKGEK------PIGILWNMNN---K---RLDPKSDNRYTI------REEI-LPNGVLSDLSIKRTERGDS 125 (543)
Q Consensus 65 ~g~~~~l~C~~~g~p------~~~i~W~~~~---~---~i~~~~~~~~~~------~~~~-~~~~~~~~L~i~~~~~~D~ 125 (543)
.|++++|.|.....+ ...|.|+|.. . .+....+.+... +-.. .......+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999988753 4799999862 1 110001111110 0000 1123457899999999999
Q ss_pred ccEEEEEeccc
Q psy3718 126 ALFTCEIKSQK 136 (543)
Q Consensus 126 G~Y~C~a~n~~ 136 (543)
|.|.|.+.+..
T Consensus 81 G~Y~C~v~~~~ 91 (106)
T cd05714 81 GRYRCEVIDGI 91 (106)
T ss_pred EEEEEEEEcCC
Confidence 99999999853
No 201
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.01 E-value=1.7e-05 Score=62.13 Aligned_cols=71 Identities=20% Similarity=0.311 Sum_probs=47.0
Q ss_pred cCCCeEEEEEeeccC------CceEEEccCCee--------cC--------CCCCCceEEeeeecCCCceeeEEEEeeec
Q psy3718 65 RGEPSVLQCEAKGEK------PIGILWNMNNKR--------LD--------PKSDNRYTIREEILPNGVLSDLSIKRTER 122 (543)
Q Consensus 65 ~g~~~~l~C~~~g~p------~~~i~W~~~~~~--------i~--------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 122 (543)
.|++++|.|.....| ...|.|+|.... +. .....|+.+.. ......+|.|.+++.
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~sL~I~~v~~ 77 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRR---AHDLDASLVITDLRL 77 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecC---CCCCcEEEEEccCCh
Confidence 489999999987663 367999985411 00 00112333211 112246899999999
Q ss_pred CCCccEEEEEecccce
Q psy3718 123 GDSALFTCEIKSQKIS 138 (543)
Q Consensus 123 ~D~G~Y~C~a~n~~~s 138 (543)
+|+|.|.|.+.+..+.
T Consensus 78 ~DsG~Y~C~v~~~~~~ 93 (106)
T cd05877 78 EDYGRYRCEVIDGLED 93 (106)
T ss_pred HHCEEEEEEEEecccc
Confidence 9999999999886444
No 202
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.01 E-value=1.3e-05 Score=60.09 Aligned_cols=46 Identities=11% Similarity=-0.105 Sum_probs=34.5
Q ss_pred ccEEEeecC-------CCeEEecCceEEEec----CCeEEEEEEecCCCCCCC--ceEE
Q psy3718 2 ENFFFYRGF-------NPRILLGRVLLPIGE----SSFHFDPELLNPSFNGFP--PLLL 47 (543)
Q Consensus 2 ~~~~~~~~~-------~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~~s--~~l~ 47 (543)
+.++|++.. .++....+++|.|.+ |+|.|+|.|.|..|...+ +.|.
T Consensus 27 p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 85 (86)
T cd05724 27 PTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLS 85 (86)
T ss_pred CEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence 568898732 234445678999999 999999999999998643 4544
No 203
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=97.99 E-value=1.2e-05 Score=59.23 Aligned_cols=24 Identities=8% Similarity=-0.081 Sum_probs=21.7
Q ss_pred CceEEEec----CCeEEEEEEecCCCCC
Q psy3718 18 RVLLPIGE----SSFHFDPELLNPSFNG 41 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n~~g~~ 41 (543)
.+.|+|.+ |+|.|+|+|.|..|..
T Consensus 45 ~~~L~I~~~~~~D~G~YtC~A~N~~G~~ 72 (81)
T cd04971 45 HGCLQFDNPTHVNNGNYTLVASNEYGQD 72 (81)
T ss_pred EEEEEECCCCcccCeEEEEEEEeCCCCe
Confidence 45799998 9999999999999986
No 204
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.97 E-value=4.3e-05 Score=57.80 Aligned_cols=70 Identities=11% Similarity=0.260 Sum_probs=44.6
Q ss_pred CCeEEEEEeeccCC-ceEEEccCCe----ecC-----------CCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718 67 EPSVLQCEAKGEKP-IGILWNMNNK----RLD-----------PKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC 130 (543)
Q Consensus 67 ~~~~l~C~~~g~p~-~~i~W~~~~~----~i~-----------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 130 (543)
++++|.|.....+. ..|+|.|... .+. ..-..|..+... ...-.+|.|.+++.+|+|.|+|
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~---~~~d~sl~i~nv~~~D~G~Y~C 77 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNY---SLLDATIMLENVGFSDIGVYIC 77 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCC---CCCccEEEEeCCCccccEEEEE
Confidence 47899999875433 6899987421 110 011123433211 1223589999999999999999
Q ss_pred EEec-cccee
Q psy3718 131 EIKS-QKISS 139 (543)
Q Consensus 131 ~a~n-~~~sv 139 (543)
.+.+ ..|+.
T Consensus 78 ~v~tfP~G~~ 87 (96)
T cd05887 78 KAVTFPLGNT 87 (96)
T ss_pred EEEeCCCCCe
Confidence 9755 46664
No 205
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.96 E-value=3.2e-05 Score=60.62 Aligned_cols=71 Identities=24% Similarity=0.367 Sum_probs=47.2
Q ss_pred EeecCCCeEEEEEeecc-CCceEEEccCCee---c--C----CC-----------CCCceEEeeeecCCCceeeEEEEee
Q psy3718 62 TSRRGEPSVLQCEAKGE-KPIGILWNMNNKR---L--D----PK-----------SDNRYTIREEILPNGVLSDLSIKRT 120 (543)
Q Consensus 62 ~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~~---i--~----~~-----------~~~~~~~~~~~~~~~~~~~L~i~~~ 120 (543)
.+.+|++++|.|.+.+. ....+.|+|-..- . . .. +..++.+.. ........|+|.++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~~~L~I~~~ 79 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRV--TSDSSRYRLHINRV 79 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEE--ECCCCEEEEEECCC
Confidence 57899999999998764 3458999974221 0 0 00 012343321 12334467999999
Q ss_pred ecCCCccEEEEEec
Q psy3718 121 ERGDSALFTCEIKS 134 (543)
Q Consensus 121 ~~~D~G~Y~C~a~n 134 (543)
+.+|+|.|.|...+
T Consensus 80 ~~~Dsg~YyCa~~~ 93 (107)
T cd07700 80 KPEDSGTYFCMTVG 93 (107)
T ss_pred CHHHCEEEEEeEcC
Confidence 99999999999864
No 206
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.96 E-value=3.2e-05 Score=57.15 Aligned_cols=63 Identities=25% Similarity=0.524 Sum_probs=43.7
Q ss_pred eEEEEEeecc-CCceEEEccCCeecCCCCCCceEEeeeecCCC----ceeeEEEEeeecCCCccEEEEEeccc
Q psy3718 69 SVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPNG----VLSDLSIKRTERGDSALFTCEIKSQK 136 (543)
Q Consensus 69 ~~l~C~~~g~-p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~n~~ 136 (543)
++|.|.+.|. |.+.|.|+++|+++.... . .+... .++ ..+.|.|......|...|+|.|.+..
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~--~-~~~~~--~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAP--T-SVLED--GNGKTFTVSSSVEFQVTREDDGAEITCSVGHES 69 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcc--e-eEEEC--CCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence 6899999885 889999999999885321 1 12111 121 13456665656677899999999964
No 207
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=97.94 E-value=1.9e-05 Score=57.58 Aligned_cols=46 Identities=15% Similarity=0.046 Sum_probs=33.1
Q ss_pred CccEEEeecCC-------CeEE--ecCceEEEec--------CCeEEEEEEecCCCCCCCceE
Q psy3718 1 MENFFFYRGFN-------PRIL--LGRVLLPIGE--------SSFHFDPELLNPSFNGFPPLL 46 (543)
Q Consensus 1 ~~~~~~~~~~~-------~~~~--~~~g~L~I~~--------D~G~Y~C~a~n~~g~~~s~~l 46 (543)
+|.++|++... .++. ..+|+|.|.+ |+|.|+|.|.|..|...+..+
T Consensus 12 ~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~ 74 (77)
T cd05733 12 PPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEI 74 (77)
T ss_pred CCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEcccc
Confidence 46789987321 2333 3468999975 789999999999998755433
No 208
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.93 E-value=6.1e-05 Score=58.12 Aligned_cols=70 Identities=14% Similarity=0.263 Sum_probs=43.8
Q ss_pred CCeEEEEEeeccC---CceEEEccCCe---e--c---CCCC--------CCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718 67 EPSVLQCEAKGEK---PIGILWNMNNK---R--L---DPKS--------DNRYTIREEILPNGVLSDLSIKRTERGDSAL 127 (543)
Q Consensus 67 ~~~~l~C~~~g~p---~~~i~W~~~~~---~--i---~~~~--------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 127 (543)
.+++|.|.....+ ...|.|+|... + + .... .+|..+.... .....+|+|.+++.+|+|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~--~~~~~sL~I~nv~~sD~Gt 78 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPN--PIADGALILRNAVQADEGK 78 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCC--CCCceEEEEecCccccceE
Confidence 3689999987544 45899998421 1 1 0100 1233332111 1123579999999999999
Q ss_pred EEEEEec-ccce
Q psy3718 128 FTCEIKS-QKIS 138 (543)
Q Consensus 128 Y~C~a~n-~~~s 138 (543)
|.|.+.+ ..|+
T Consensus 79 Y~C~v~~~p~g~ 90 (100)
T cd05888 79 YKCRVITFPAGN 90 (100)
T ss_pred EEEEEEeCCCCC
Confidence 9999987 4555
No 209
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.93 E-value=4.8e-05 Score=60.57 Aligned_cols=76 Identities=21% Similarity=0.375 Sum_probs=50.7
Q ss_pred ecceeEeecCCCeEEEEEeeccC--CceEEEccC--Ceec------C---------CCCCCceEEeeeecCCCceeeEEE
Q psy3718 57 KLRNQTSRRGEPSVLQCEAKGEK--PIGILWNMN--NKRL------D---------PKSDNRYTIREEILPNGVLSDLSI 117 (543)
Q Consensus 57 ~~~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~--~~~i------~---------~~~~~~~~~~~~~~~~~~~~~L~i 117 (543)
.|....+.+|++++|.|...+.. ...+.|+|- |+.+ . .....++.+... .......|.|
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~--~~~~~~~L~I 80 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRD--TSKSTVYLQL 80 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEE--ccCCEEEEEE
Confidence 46677889999999999987543 467999973 2211 0 001134443321 1123347999
Q ss_pred EeeecCCCccEEEEEec
Q psy3718 118 KRTERGDSALFTCEIKS 134 (543)
Q Consensus 118 ~~~~~~D~G~Y~C~a~n 134 (543)
.++.++|+|.|.|.+..
T Consensus 81 ~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 81 NSLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCCHHHCEEEEEEEEc
Confidence 99999999999998865
No 210
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=97.91 E-value=3.6e-05 Score=58.36 Aligned_cols=46 Identities=7% Similarity=-0.070 Sum_probs=31.4
Q ss_pred ccEEEeecCCC-------eEEecC----ceEEEec----CCeEEEEEEecCCCCCCC--ceEE
Q psy3718 2 ENFFFYRGFNP-------RILLGR----VLLPIGE----SSFHFDPELLNPSFNGFP--PLLL 47 (543)
Q Consensus 2 ~~~~~~~~~~~-------~~~~~~----g~L~I~~----D~G~Y~C~a~n~~g~~~s--~~l~ 47 (543)
++++|++.++. +....+ ++|+|.+ |+|.|+|.|.|..|.... +.|.
T Consensus 29 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 29 KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK 91 (92)
T ss_pred CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence 36788864332 222223 3899999 999999999999876544 4444
No 211
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.91 E-value=0.00011 Score=55.83 Aligned_cols=78 Identities=17% Similarity=0.305 Sum_probs=49.1
Q ss_pred CCeEEeecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCC-CCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKS-DNRYTIREEILPNGVLSDLSIKRTERGDSAL 127 (543)
Q Consensus 51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 127 (543)
||.+.+.+.... |+.++|.|.+.|. |. .++.|++++..+.... ...... .+++.........+..+|.+.
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~----~~d~ty~~~s~l~v~~~~~~~ 74 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILP----NGDGTYQLWVTLEVPPEDKAR 74 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEE----CCCCeEEEEEEEEECCCCCCE
Confidence 566555433322 7889999999994 55 5999999996432221 111111 134444444455566679999
Q ss_pred EEEEEecc
Q psy3718 128 FTCEIKSQ 135 (543)
Q Consensus 128 Y~C~a~n~ 135 (543)
|+|.+...
T Consensus 75 ytC~V~H~ 82 (93)
T cd07698 75 YSCRVEHS 82 (93)
T ss_pred EEEEEEeC
Confidence 99999885
No 212
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=97.91 E-value=2.8e-05 Score=56.73 Aligned_cols=47 Identities=9% Similarity=-0.093 Sum_probs=32.6
Q ss_pred ccEEEeecCC------CeEEe--cCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGFN------PRILL--GRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~~------~~~~~--~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
|.++|++... .++.+ .+++|.|.+ |+|.|+|.|.|..|.. +++.+.|
T Consensus 13 p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 13 PTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 5688987321 12222 246899999 9999999999999985 3444443
No 213
>KOG3515|consensus
Probab=97.91 E-value=0.00027 Score=72.38 Aligned_cols=244 Identities=13% Similarity=0.112 Sum_probs=137.1
Q ss_pred CCeEEEEEEecCCCCCCC-ceEEEeCCCeEEeecceeEeecCCCeEEEEEeeccCC--ceEEEccCCeecCCCCCCceEE
Q psy3718 26 SSFHFDPELLNPSFNGFP-PLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKP--IGILWNMNNKRLDPKSDNRYTI 102 (543)
Q Consensus 26 D~G~Y~C~a~n~~g~~~s-~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~~~~~i~~~~~~~~~~ 102 (543)
|.|.|.|.|.|..|.... ..+.+...|.+...-..+....|+.+.+.|.....+. -.+.|.+.+.+.....+..-..
T Consensus 469 d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~ 548 (741)
T KOG3515|consen 469 DGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQ 548 (741)
T ss_pred cCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhhhcccccCCCCcccccccccc
Confidence 999999999999887644 3456777777766656677788888999999988775 5778999888763222111111
Q ss_pred eeeecCCCceeeEEEEeeecCCCccEEEEEecccce------eeeeeeecccccccceEEEEEEEecccCCCCCCCcEEe
Q psy3718 103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS------SQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTL 176 (543)
Q Consensus 103 ~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s------v~~~~~~v~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~ 176 (543)
. .....+.+.+......-++.|.|.+.+. +. +-.....+. +.+.+.+.. ....|.+-.+..-..
T Consensus 549 ~----~~~~~a~~~~~~~~~~~~~~~~~~~d~~-~~pA~~~~~l~~~s~~~-v~~~tp~~~----~~~~g~v~as~~~~a 618 (741)
T KOG3515|consen 549 Q----QLMAHAQLLVSGNSSLQASETACVVDGS-SPPAGLSLVLKAYSALI-VTVRTPNMY----TAQEGCVNASDDCVA 618 (741)
T ss_pred c----ccCCccceeecccccccccceEEeecCC-CCccccceEEEeccccc-ccccCCcee----eeccCccccccccee
Confidence 1 1111234666665566679999999992 21 001111110 111111111 001111111111100
Q ss_pred eecCCCCcceeEeccCcc-----------ccccccee--ccccccccCCCCccceEEEEEEEEEcCCCCCCCCccEEEec
Q psy3718 177 SPSNRVPARIASFNDNFT-----------ATYTEDIK--LPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILT 243 (543)
Q Consensus 177 ~pi~~~~~~~v~~~~~~~-----------~~~~~~~~--~~~~~~g~p~p~~~w~~y~~~v~a~n~~G~~~~s~~~~~~t 243 (543)
. .++-....+.+... ..|..... ........+. ..|...|.+.|..|.+..+....--+
T Consensus 619 ~---~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-----~~y~~~c~t~n~lg~~~v~~~~~~~t 690 (741)
T KOG3515|consen 619 S---GVPSTSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHIDG-----SDYENGCTTQNLLGSDHVSGAIHSGT 690 (741)
T ss_pred c---ccccceeecccCCCcccCCceEEEeeeeccccccccccccCCcch-----hhhcceeeecccCCCccccceecCCc
Confidence 0 11101111211110 01111000 0000011444 78899999999999887766554443
Q ss_pred cCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCC
Q psy3718 244 AEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTD 294 (543)
Q Consensus 244 ~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~ 294 (543)
. +..|.++.+.......+.+.|.+..+ .+..+.|.+.|...+..
T Consensus 691 ~----~~~~~n~~~~~~~~~~i~l~~~p~fd---gg~~q~f~~~~~~~~~~ 734 (741)
T KOG3515|consen 691 A----SVGPINLTYDNLTYSTISLEWMPGFD---GGLQQRFFLKYYDLGTM 734 (741)
T ss_pred C----CCCccceEeeeeeeeeeceeeeeccc---cccccceeeehhhcCCc
Confidence 3 34667999999999999999999876 45667888887665543
No 214
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.90 E-value=3.9e-05 Score=56.62 Aligned_cols=63 Identities=19% Similarity=0.379 Sum_probs=42.5
Q ss_pred eEEEEEeec-cCCceEEEccCCeecCCCCCCceEEeeeecCCC---ceeeEEEEeeecCCCccEEEEEecc
Q psy3718 69 SVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEILPNG---VLSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 69 ~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
++|.|.+.| .|.+.|.|+|+|+.+... ....... ..++ .++.|.|......|...|+|.|.+.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~--~~~~~~~--~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~ 68 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDV--KYLKEED--ANRKTFTVSSTLDFRVDRSDDGVAIICRVDHE 68 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCc--eeeEeeC--CCCCEEEEEEEEEEEcccccCCCEEEEEEech
Confidence 689999988 678999999999997421 1111110 1122 2446666655566778999999996
No 215
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.88 E-value=7.5e-05 Score=59.78 Aligned_cols=76 Identities=11% Similarity=0.166 Sum_probs=50.1
Q ss_pred ecceeEeecCCCeEEEEEeeccC------CceEEEccCCe-----ecCC----------CCCCceEEeeeecCCCceeeE
Q psy3718 57 KLRNQTSRRGEPSVLQCEAKGEK------PIGILWNMNNK-----RLDP----------KSDNRYTIREEILPNGVLSDL 115 (543)
Q Consensus 57 ~~~~~~v~~g~~~~l~C~~~g~p------~~~i~W~~~~~-----~i~~----------~~~~~~~~~~~~~~~~~~~~L 115 (543)
.|+.+.+.+|++++|.|...... ...+.|+|... .+.. .-..|+.+... ......+|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~--~~~~~~sL 82 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGD--LGKKNCSL 82 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecC--CCCCEEEE
Confidence 36667889999999999875332 35689997531 1100 00123333211 13345689
Q ss_pred EEEeeecCCCccEEEEEec
Q psy3718 116 SIKRTERGDSALFTCEIKS 134 (543)
Q Consensus 116 ~i~~~~~~D~G~Y~C~a~n 134 (543)
.|.+++.+|+|.|.|....
T Consensus 83 ~I~~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 83 LISDAQPEDSGKYFFRVEL 101 (119)
T ss_pred EEccCChhhCeEEEEEEEc
Confidence 9999999999999998866
No 216
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=97.88 E-value=2.2e-05 Score=59.32 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=33.8
Q ss_pred ccEEEeecCC----CeEEe--cCceEEEec----CCeEEEEEEecCCCCCCC--ceEEE
Q psy3718 2 ENFFFYRGFN----PRILL--GRVLLPIGE----SSFHFDPELLNPSFNGFP--PLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~~----~~~~~--~~g~L~I~~----D~G~Y~C~a~n~~g~~~s--~~l~v 48 (543)
|.++|++... .++.+ .+++|.|.+ |+|.|+|.|.|..|...+ +.|.|
T Consensus 32 p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 32 TYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred CEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 5678887432 22222 346999999 999999999999998643 45555
No 217
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=97.86 E-value=2.6e-05 Score=60.01 Aligned_cols=31 Identities=10% Similarity=-0.082 Sum_probs=26.5
Q ss_pred ceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS 49 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~ 49 (543)
++|.|.+ |+|.|+|.|.|..|.. .++.|.|.
T Consensus 65 ~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 65 SELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN 100 (101)
T ss_pred EEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence 6899999 9999999999999986 55677764
No 218
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.86 E-value=6.7e-05 Score=57.60 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=43.7
Q ss_pred CCCeEEEEEeeccCC-ceEEEccCCee----c---CCCC--------CCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718 66 GEPSVLQCEAKGEKP-IGILWNMNNKR----L---DPKS--------DNRYTIREEILPNGVLSDLSIKRTERGDSALFT 129 (543)
Q Consensus 66 g~~~~l~C~~~g~p~-~~i~W~~~~~~----i---~~~~--------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 129 (543)
|++++|.|....... -.|.|+|.... + .... ..++.+. ..+....+|.|.+++.+|+|.|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~sL~I~nv~~~D~G~Y~ 77 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT---SLGLNSTSITIWNVTLEDEGCYK 77 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc---CCCCCccEEEEeCCceeeeEEEE
Confidence 789999998665433 37999974321 0 0000 1122211 11223468999999999999999
Q ss_pred EEEecc-cce
Q psy3718 130 CEIKSQ-KIS 138 (543)
Q Consensus 130 C~a~n~-~~s 138 (543)
|...+. .|+
T Consensus 78 C~~~~~p~g~ 87 (97)
T cd05846 78 CIFNTFPDGS 87 (97)
T ss_pred EEEEeCCCCC
Confidence 997653 444
No 219
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.84 E-value=0.0002 Score=53.90 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=43.5
Q ss_pred ecCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718 64 RRGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 64 ~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
..|+..+|.|.+.| .|. ..+.|+|||.++. +.. ...+.. -.++......-..+.+.+...|+|.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~-~~~~~p--~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVE-QSDLSF--SKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcE-ECcEEE--CCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 45778899999999 454 7999999999985 221 111111 12333232333345677888999999874
No 220
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.84 E-value=0.00027 Score=51.72 Aligned_cols=80 Identities=30% Similarity=0.610 Sum_probs=52.4
Q ss_pred CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEE
Q psy3718 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ 330 (543)
Q Consensus 251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 330 (543)
+|.++.+......++.|+|.++... . . ..|.+.|..........+..... ......+.+.+|.|++.|.|+|+
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~--~-~-~~y~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~~~~~Y~v~v~ 75 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDD--G-I-TGYIVGYRVEYREEGSSWKEVNV---TPSSTSYTLTGLKPGTEYEFRVR 75 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCCCC--C-C-CccEEEEEEEEecCCCccEEEEe---cCCccEEEEeCcCCCCEEEEEEE
Confidence 3445777777777999999977543 1 1 67777776544322101111111 12257899999999999999999
Q ss_pred EEeCCCC
Q psy3718 331 ALNKLGP 337 (543)
Q Consensus 331 a~n~~G~ 337 (543)
|.+..|.
T Consensus 76 a~~~~g~ 82 (83)
T smart00060 76 AVNGAGE 82 (83)
T ss_pred EEcccCC
Confidence 9987553
No 221
>PHA03376 BARF1; Provisional
Probab=97.84 E-value=0.00025 Score=58.84 Aligned_cols=77 Identities=13% Similarity=0.066 Sum_probs=50.3
Q ss_pred eeEeecCCCeEEEEEee---ccCCceEEEccCCe----e-cCCCCC------CceEEeeeecCCCceeeEEEEeeecCCC
Q psy3718 60 NQTSRRGEPSVLQCEAK---GEKPIGILWNMNNK----R-LDPKSD------NRYTIREEILPNGVLSDLSIKRTERGDS 125 (543)
Q Consensus 60 ~~~v~~g~~~~l~C~~~---g~p~~~i~W~~~~~----~-i~~~~~------~~~~~~~~~~~~~~~~~L~i~~~~~~D~ 125 (543)
.+.+..|+++.|.|.-. ..+...|.|+|++. - +..... ..++-...+..+...-.|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 45678999999999975 23567999999532 1 100000 0111122222334556899999999999
Q ss_pred ccEEEEEeccc
Q psy3718 126 ALFTCEIKSQK 136 (543)
Q Consensus 126 G~Y~C~a~n~~ 136 (543)
|.|+|..+-..
T Consensus 100 GtY~C~fQkge 110 (221)
T PHA03376 100 GNYLCRMKLGE 110 (221)
T ss_pred ceEEEEEEcCC
Confidence 99999998753
No 222
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=97.83 E-value=6.1e-05 Score=54.86 Aligned_cols=48 Identities=10% Similarity=-0.059 Sum_probs=35.3
Q ss_pred ccEEEeecCC--------CeEEecCc-eEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718 2 ENFFFYRGFN--------PRILLGRV-LLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS 49 (543)
Q Consensus 2 ~~~~~~~~~~--------~~~~~~~g-~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~ 49 (543)
+.++|++... +.....++ .|.|.+ |+|.|+|.|.|..|.. .++.|.|+
T Consensus 13 p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 13 PRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 4678876432 12234444 699999 9999999999999987 56788775
No 223
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.81 E-value=0.00037 Score=52.60 Aligned_cols=69 Identities=14% Similarity=0.279 Sum_probs=41.5
Q ss_pred ecCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718 64 RRGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 64 ~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
..|+.++|.|.+.| .|. ..+.|.+||.++..+. ..-.+. .-.++......-..+.+.+...|+|.+...
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~-~~~~~~--~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~ 83 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGV-SETRYY--PRQDLSFQKFSYLNFTPEEGDIYSCIVEHW 83 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCce-EEeeeE--eCCCCcEEEEEEEEEECCCCCeEEEEEEeC
Confidence 34677899999999 564 8999999999874321 101111 012232222222234456777999999774
No 224
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.80 E-value=7.1e-05 Score=56.62 Aligned_cols=79 Identities=14% Similarity=0.250 Sum_probs=45.7
Q ss_pred ecceeEeecCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCCc---eeeEEEEeeecCCCccEEEE
Q psy3718 57 KLRNQTSRRGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGV---LSDLSIKRTERGDSALFTCE 131 (543)
Q Consensus 57 ~~~~~~v~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~ 131 (543)
+|.......++.++|.|.+.| .|. .+|.|++||..+........... ..++. ++.|.|..-.-.+...|+|.
T Consensus 5 ~ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~---~~~~Ty~~~S~L~v~~~~w~~~~~ytC~ 81 (94)
T cd05847 5 HSSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQK---EEGSTFSTTSELNVTQEDWKSGKTYTCK 81 (94)
T ss_pred CcChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEE---CCCCcEEEEEEEEEchHHhcCCCeEEEE
Confidence 343333335677999999999 565 89999999998632211100111 11222 23444443323356799999
Q ss_pred Eecccce
Q psy3718 132 IKSQKIS 138 (543)
Q Consensus 132 a~n~~~s 138 (543)
+.....+
T Consensus 82 V~H~~~~ 88 (94)
T cd05847 82 VTHQGTT 88 (94)
T ss_pred EEECCee
Confidence 9886444
No 225
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.80 E-value=7.4e-05 Score=58.71 Aligned_cols=70 Identities=20% Similarity=0.294 Sum_probs=45.5
Q ss_pred cCCCeEEEEEeeccC----------CceEEEccC--CeecC------------CCCCCceEEeeeecCCCceeeEEEEee
Q psy3718 65 RGEPSVLQCEAKGEK----------PIGILWNMN--NKRLD------------PKSDNRYTIREEILPNGVLSDLSIKRT 120 (543)
Q Consensus 65 ~g~~~~l~C~~~g~p----------~~~i~W~~~--~~~i~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~ 120 (543)
.|++++|.|.....+ ...|.|+|. ++.+. ..-.+|+.+... .......+|+|.++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~-~~~~~~asL~I~~l 79 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNY-PENRGDASLEISRL 79 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccC-CCCCCcEEEEECCC
Confidence 389999999997654 367999985 22110 001122222111 01234468999999
Q ss_pred ecCCCccEEEEEecc
Q psy3718 121 ERGDSALFTCEIKSQ 135 (543)
Q Consensus 121 ~~~D~G~Y~C~a~n~ 135 (543)
+.+|+|.|.|.+...
T Consensus 80 ~~sD~G~Y~C~v~~~ 94 (110)
T cd05878 80 RSSDSGVYRCEVMHG 94 (110)
T ss_pred ChhhCEEEEEEEEeC
Confidence 999999999999875
No 226
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=97.79 E-value=4.6e-05 Score=58.35 Aligned_cols=48 Identities=6% Similarity=-0.135 Sum_probs=34.8
Q ss_pred ccEEEeecC------CCeEE-ecC-ceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718 2 ENFFFYRGF------NPRIL-LGR-VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS 49 (543)
Q Consensus 2 ~~~~~~~~~------~~~~~-~~~-g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~ 49 (543)
+.++|++.. +.++. ..+ +.|.|.+ |+|.|+|.|.|..|.. .++.|.|.
T Consensus 33 p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 33 PTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred CEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence 567887632 13333 233 4799999 9999999999999986 56777774
No 227
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=97.79 E-value=4.5e-05 Score=58.55 Aligned_cols=30 Identities=17% Similarity=0.018 Sum_probs=25.3
Q ss_pred ceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
+.|.|.+ |+|.|+|.|.|..|.. .++.|.|
T Consensus 62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 62 SSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence 4899998 9999999999999986 4556654
No 228
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=97.78 E-value=4.2e-05 Score=58.96 Aligned_cols=31 Identities=13% Similarity=-0.066 Sum_probs=26.5
Q ss_pred ceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS 49 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~ 49 (543)
++|.|.+ |+|.|+|.|.|..|.. .++.|.|+
T Consensus 65 s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 65 SKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred cEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence 5899999 9999999999999986 56777764
No 229
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.78 E-value=3.8e-05 Score=58.19 Aligned_cols=41 Identities=12% Similarity=-0.059 Sum_probs=31.5
Q ss_pred ccEEEeecC-------CCeEEecCceEEEec-----CCeEEEEEEecCCCCCC
Q psy3718 2 ENFFFYRGF-------NPRILLGRVLLPIGE-----SSFHFDPELLNPSFNGF 42 (543)
Q Consensus 2 ~~~~~~~~~-------~~~~~~~~g~L~I~~-----D~G~Y~C~a~n~~g~~~ 42 (543)
++++|+++. +.++...+|.|.|.+ |+|.|+|.|.|..|...
T Consensus 34 p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 34 PTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 678898732 234445678999976 99999999999999753
No 230
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.76 E-value=0.00017 Score=55.13 Aligned_cols=69 Identities=20% Similarity=0.382 Sum_probs=42.4
Q ss_pred CCeEEEEEeecc-CC---ceEEEccCCe----ec-----------CCCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718 67 EPSVLQCEAKGE-KP---IGILWNMNNK----RL-----------DPKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL 127 (543)
Q Consensus 67 ~~~~l~C~~~g~-p~---~~i~W~~~~~----~i-----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 127 (543)
.+++|.|..... |. ..|+|.+... .+ ...-..|+.+..... .-.+|.|.+++.+|.|.
T Consensus 1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~---~daSi~i~nl~~~D~G~ 77 (99)
T cd05886 1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSF---EDGTISLSRLELEDEGV 77 (99)
T ss_pred CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCC---CcceEEEcCCccccCEE
Confidence 368999998743 21 2699987421 11 000112222221111 22589999999999999
Q ss_pred EEEEEec-ccce
Q psy3718 128 FTCEIKS-QKIS 138 (543)
Q Consensus 128 Y~C~a~n-~~~s 138 (543)
|+|.+.+ ..|+
T Consensus 78 Y~C~v~t~P~g~ 89 (99)
T cd05886 78 YICEFATFPTGN 89 (99)
T ss_pred EEEEEEeCCCCC
Confidence 9999999 4565
No 231
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.75 E-value=3.2e-05 Score=56.34 Aligned_cols=23 Identities=13% Similarity=-0.008 Sum_probs=21.2
Q ss_pred ceEEEec----CCeEEEEEEecCCCCC
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSFNG 41 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g~~ 41 (543)
++|.|.+ |+|.|+|.|.|..|..
T Consensus 44 ~~L~I~~~~~~DsG~Y~C~a~N~~g~~ 70 (76)
T cd05895 44 SELQISKASLADNGEYKCMVSSKLGND 70 (76)
T ss_pred EEEEECcCCcccCEEEEEEEEeCCCce
Confidence 6899999 9999999999999875
No 232
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=97.75 E-value=4.9e-05 Score=57.65 Aligned_cols=47 Identities=11% Similarity=0.031 Sum_probs=33.2
Q ss_pred ccEEEeecCC------CeE-EecC---ceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGFN------PRI-LLGR---VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~~------~~~-~~~~---g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
+.++||+... ++. .+.+ ++|.|.+ |+|.|+|.|.|..|.. .+..|.|
T Consensus 31 p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~ 92 (92)
T cd05891 31 PEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV 92 (92)
T ss_pred CeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence 5688987432 111 1233 3899999 9999999999999986 5556554
No 233
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=97.75 E-value=3.3e-05 Score=57.71 Aligned_cols=47 Identities=9% Similarity=-0.146 Sum_probs=33.0
Q ss_pred ccEEEeecCC-----Ce---EE--ecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 2 ENFFFYRGFN-----PR---IL--LGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~~-----~~---~~--~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
+.++|++... .+ +. ..+++|.|.+ |+|.|+|.|.|..|.. .++.|.|
T Consensus 24 p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 85 (85)
T cd05857 24 PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 85 (85)
T ss_pred CEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence 5688987421 11 11 2345899988 9999999999999986 4566654
No 234
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=97.75 E-value=6.7e-05 Score=56.62 Aligned_cols=40 Identities=10% Similarity=0.089 Sum_probs=31.3
Q ss_pred ccEEEeecCC-----CeEEecCceEEEec----CCeEEEEEEecCCCCC
Q psy3718 2 ENFFFYRGFN-----PRILLGRVLLPIGE----SSFHFDPELLNPSFNG 41 (543)
Q Consensus 2 ~~~~~~~~~~-----~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~ 41 (543)
++++||++.. ++.+..++.|.|.+ |+|.|+|.|.|..|..
T Consensus 30 p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 30 PPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred CcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence 5789988442 23333778999999 9999999999998775
No 235
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=97.75 E-value=5.8e-05 Score=55.27 Aligned_cols=40 Identities=13% Similarity=0.019 Sum_probs=29.8
Q ss_pred ccEEEeecCC-----CeEE-ec---CceEEEec----CCeEEEEEEecCCCCC
Q psy3718 2 ENFFFYRGFN-----PRIL-LG---RVLLPIGE----SSFHFDPELLNPSFNG 41 (543)
Q Consensus 2 ~~~~~~~~~~-----~~~~-~~---~g~L~I~~----D~G~Y~C~a~n~~g~~ 41 (543)
|.++|++..+ .++. .. .+.|.|.+ |+|.|+|.|.|..|..
T Consensus 16 p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 68 (78)
T cd05743 16 PIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMV 68 (78)
T ss_pred CEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEE
Confidence 6788976432 2332 22 25899999 9999999999999986
No 236
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.74 E-value=0.0001 Score=52.43 Aligned_cols=66 Identities=27% Similarity=0.362 Sum_probs=46.0
Q ss_pred eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718 69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK 136 (543)
Q Consensus 69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 136 (543)
+.|.|.+.+.+.+.+.|++++......... ..............|.|.++..+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccE--EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 478999999778999999988776432211 000000112234579999999999999999998853
No 237
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.73 E-value=0.00013 Score=61.01 Aligned_cols=73 Identities=22% Similarity=0.281 Sum_probs=50.6
Q ss_pred ceeEeecCCCeEEEEEee-ccCCceEEEccCCeecC----------CCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718 59 RNQTSRRGEPSVLQCEAK-GEKPIGILWNMNNKRLD----------PKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL 127 (543)
Q Consensus 59 ~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~~i~----------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 127 (543)
..+.|.+|++++|.|... +...+.++|+|..+.+. .+-.+|+.+ +..+-..+.|+|.+++.+|+|.
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~---mS~s~~~StItIknVt~sDeGc 99 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEY---LSKSFNESTILIKNVSLKDNGC 99 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEE---eccCCCcceEEEEeCChhhCeE
Confidence 457889999999999984 55678999998643221 001123321 1122234689999999999999
Q ss_pred EEEEEec
Q psy3718 128 FTCEIKS 134 (543)
Q Consensus 128 Y~C~a~n 134 (543)
|+|....
T Consensus 100 Y~C~F~t 106 (189)
T PHA02987 100 YTCIFNT 106 (189)
T ss_pred EEEEEEe
Confidence 9998765
No 238
>KOG4802|consensus
Probab=97.73 E-value=0.0004 Score=64.51 Aligned_cols=118 Identities=25% Similarity=0.439 Sum_probs=77.8
Q ss_pred cCCCCccceEEEEEEEEEcCCCCC---CCCccEEEeccCCCCCCCCeeeEEEecC---CCeEEEEeeCCCCCCCCcceeE
Q psy3718 210 VPAPEIIWKTYHIRIVAENEIGSS---EPSDTVTILTAEEAPSGPPTHIKVEATD---QNTLKVSWSPPERDHWNGVIQG 283 (543)
Q Consensus 210 ~p~p~~~w~~y~~~v~a~n~~G~~---~~s~~~~~~t~~~~p~~~P~~~~~~~~~---~~~i~l~W~~~~~~~~~~~i~~ 283 (543)
.|+ .-|.|++.|+|..|.- .++.+......+.+|+ +|.++.+..+. .-...|.|.|+.. +-++..
T Consensus 217 rPg-----Rwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp-~P~dl~l~~v~~dG~~~~~v~w~P~~s---dlPv~~ 287 (516)
T KOG4802|consen 217 RPG-----RWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPP-SPNDLKLIGVQFDGRYMLKVVWCPSKS---DLPVEK 287 (516)
T ss_pred Ccc-----eeEEEEEeeeecccccccCCCCCCCCCCCCCCCCc-CcccceeeeeeecceEEEEEEeCCCCC---CCccee
Confidence 788 8999999999987754 4444444544444554 78888877653 2357788888766 458999
Q ss_pred EEEEEEEcC-CCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCC
Q psy3718 284 YYVGYKETS-TDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGP 339 (543)
Q Consensus 284 y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~ 339 (543)
|.|.|...- ............ .-..+...|+.|.|+..|.+.|+|....|.+.
T Consensus 288 Yki~Ws~~v~s~k~~m~tks~~---~k~thq~si~~L~Pns~Y~VevqAi~y~g~~r 341 (516)
T KOG4802|consen 288 YKITWSLYVNSAKASMITKSSY---VKDTHQFSIKELLPNSSYYVEVQAISYLGSRR 341 (516)
T ss_pred eEEEeehhhhhhhhhcccccce---eeccchhhhhhcCCCCeEEEEEEEEEeccCcc
Confidence 999985432 111110000000 01223445999999999999999999988664
No 239
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=97.72 E-value=3.2e-05 Score=58.76 Aligned_cols=34 Identities=26% Similarity=0.588 Sum_probs=31.2
Q ss_pred EEEecceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718 508 IASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT 541 (543)
Q Consensus 508 ~~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~ 541 (543)
+..+++.+++.+|++++|.|.+.|.|.|++.|+|
T Consensus 4 ~~~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k 37 (92)
T cd05737 4 VGGLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLK 37 (92)
T ss_pred eccCCceEEEeCCCcEEEEEEEEecCCCeEEEEE
Confidence 3456788999999999999999999999999998
No 240
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.72 E-value=7.7e-05 Score=58.01 Aligned_cols=69 Identities=19% Similarity=0.388 Sum_probs=46.7
Q ss_pred EeecCCCeEEEEEeeccCCceEEEccCC----eec------CCC----------CCCceEEeeeecCCCceeeEEEEeee
Q psy3718 62 TSRRGEPSVLQCEAKGEKPIGILWNMNN----KRL------DPK----------SDNRYTIREEILPNGVLSDLSIKRTE 121 (543)
Q Consensus 62 ~v~~g~~~~l~C~~~g~p~~~i~W~~~~----~~i------~~~----------~~~~~~~~~~~~~~~~~~~L~i~~~~ 121 (543)
.+.+|++++|.|.........+.|+|-. ..+ ... ...++.+. ......+|.|.+++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~----~~~~~~~L~I~~~~ 77 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGS----RSSNSFVLTLKNFQ 77 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEE----ecCCEEEEEECCCC
Confidence 4678999999999876655679999733 111 000 01223321 12345689999999
Q ss_pred cCCCccEEEEEec
Q psy3718 122 RGDSALFTCEIKS 134 (543)
Q Consensus 122 ~~D~G~Y~C~a~n 134 (543)
.+|+|.|.|.+.+
T Consensus 78 ~sDsgtY~Ca~~~ 90 (104)
T cd05720 78 KENEGYYFCSVAS 90 (104)
T ss_pred HHHCEEEEEEEcc
Confidence 9999999998865
No 241
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.72 E-value=6.6e-05 Score=56.63 Aligned_cols=48 Identities=6% Similarity=-0.112 Sum_probs=34.6
Q ss_pred ccEEEeecC-----------CCeEEecCceEEEec----CCeEEEEEEec-CCCCC-CCceEEEe
Q psy3718 2 ENFFFYRGF-----------NPRILLGRVLLPIGE----SSFHFDPELLN-PSFNG-FPPLLLSS 49 (543)
Q Consensus 2 ~~~~~~~~~-----------~~~~~~~~g~L~I~~----D~G~Y~C~a~n-~~g~~-~s~~l~v~ 49 (543)
+.++||+.. +.+....+++|.|.+ |+|.|+|.|.| ..+.. ..++|.|.
T Consensus 25 p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~ 89 (91)
T cd05871 25 ASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVI 89 (91)
T ss_pred ceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEe
Confidence 578998632 245666778899999 99999999984 54433 45667664
No 242
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.71 E-value=7.7e-05 Score=57.37 Aligned_cols=82 Identities=13% Similarity=0.308 Sum_probs=48.3
Q ss_pred CCeEEee-cceeEeecCCCeEEEEEeec-cC-CceEEEccCCeecCCCCCCceEEeeeecCCCc---eeeEEEEeeecCC
Q psy3718 51 PPEFEIK-LRNQTSRRGEPSVLQCEAKG-EK-PIGILWNMNNKRLDPKSDNRYTIREEILPNGV---LSDLSIKRTERGD 124 (543)
Q Consensus 51 ~p~~~~~-~~~~~v~~g~~~~l~C~~~g-~p-~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D 124 (543)
||.+.+- |.......++.++|.|.+.| .| ..+|.|++||.++.......-... ..+|. ++.|.+....-.+
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~---~~dgty~~~s~L~v~~~~w~~ 77 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQ---QSDNTYSLSSYLTLTKSDWNK 77 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEE---CCCCCEEEEEEEEEcHHHhCC
Confidence 3544443 33344557788999999998 46 489999999999842211000000 11332 2334443333334
Q ss_pred CccEEEEEecc
Q psy3718 125 SALFTCEIKSQ 135 (543)
Q Consensus 125 ~G~Y~C~a~n~ 135 (543)
...|+|.+...
T Consensus 78 ~~~~sC~V~H~ 88 (100)
T cd07699 78 HKVYTCEVTHE 88 (100)
T ss_pred CCeEEEEEEec
Confidence 68999999885
No 243
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=97.71 E-value=3.5e-05 Score=58.57 Aligned_cols=38 Identities=29% Similarity=0.570 Sum_probs=35.2
Q ss_pred cCceEEEecceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT 541 (543)
Q Consensus 504 v~~~~~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~ 541 (543)
+++++...+..+.+..|+.++|.|.+.|.|.|.+.|+|
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k 39 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMR 39 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEE
Confidence 56788888889999999999999999999999999987
No 244
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.71 E-value=0.00012 Score=52.92 Aligned_cols=65 Identities=18% Similarity=0.364 Sum_probs=40.8
Q ss_pred CeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCc---eeeEEEEeeecCCCccEEEEEecc
Q psy3718 68 PSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGV---LSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 68 ~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
+++|.|.+.|. |. +.|.|+|||+++... ........ ..+|. ++.|.|......+...|+|.+...
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~-~~~~~~~~--~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSG-VSTTDPLK--NSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCC-EEECceEE--CCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 47899999995 55 799999999975321 11110100 12232 345666555667778999999774
No 245
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=97.70 E-value=0.00039 Score=52.36 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=24.5
Q ss_pred CCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcc
Q psy3718 455 PRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCK 500 (543)
Q Consensus 455 ~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~ 500 (543)
....+.+.+|.|+ .|.|+|+| .+..|.|..+.
T Consensus 55 ~~~~~~i~~l~p~~~Y~~~v~a--------------~~~~~~~~~s~ 87 (93)
T cd00063 55 SETSYTLTGLKPGTEYEFRVRA--------------VNGGGESPPSE 87 (93)
T ss_pred cccEEEEccccCCCEEEEEEEE--------------ECCCccCCCcc
Confidence 3344556699999 99999999 88878776544
No 246
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.70 E-value=0.00014 Score=54.77 Aligned_cols=80 Identities=23% Similarity=0.366 Sum_probs=47.7
Q ss_pred CeEEeecceeEeecCCCeEEEEEee-ccCCceEEEccCCeecCCCCCCceEEeeeecCCCc---eeeEEEEeeecCCCcc
Q psy3718 52 PEFEIKLRNQTSRRGEPSVLQCEAK-GEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGV---LSDLSIKRTERGDSAL 127 (543)
Q Consensus 52 p~~~~~~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~ 127 (543)
|.|.......... |+.+.|.|.+. |.|.|.|.|+.++..+.. ..... .....++. .+.|.+......+...
T Consensus 1 p~I~~~~~~~~~~-~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~---~~~~~-~~~~~~~~~~~~S~l~~~~~~~~~~~~ 75 (89)
T PF08205_consen 1 PEITPNPSLLEGE-GEEVTLTCSSSGGYPPPQITWYLDGGPVVA---SNTTQ-SSSPDNGLFTVSSTLTLTPTREDHGKT 75 (89)
T ss_dssp EEEEEECSEEESS-TEEEEEEEEEEEEBS-EEEEEEETTCEECE---EEEEE-EEETTTTTEEEEEEEEEETTGGGTTEE
T ss_pred CEeeCCCeeEccc-ceEEEEEEEeCCeECCeEEEEEECCCceee---eeeee-eeccCCCcceEEEEEEEEcChHHCCeE
Confidence 4455554444444 88999999765 578899999999987711 01111 11112222 2456665444445678
Q ss_pred EEEEEeccc
Q psy3718 128 FTCEIKSQK 136 (543)
Q Consensus 128 Y~C~a~n~~ 136 (543)
++|.|.+..
T Consensus 76 ~~C~~~~~~ 84 (89)
T PF08205_consen 76 LTCRASHPA 84 (89)
T ss_dssp EEEEEEETT
T ss_pred EEEEEECCc
Confidence 899999863
No 247
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=97.68 E-value=4.3e-05 Score=57.50 Aligned_cols=37 Identities=27% Similarity=0.643 Sum_probs=32.9
Q ss_pred ceEEEecceEEEeecCceeecceecCCCCCeeeEEec
Q psy3718 506 ARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTF 542 (543)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~~ 542 (543)
+.+...+..+.+..|++++|.|.+.|.|.|+++|+|-
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~ 38 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKV 38 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEEC
Confidence 4566677889999999999999999999999999983
No 248
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.66 E-value=0.00021 Score=55.04 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=44.8
Q ss_pred ecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCc---eeeEEEEeeecCCCccEEEE
Q psy3718 57 KLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGV---LSDLSIKRTERGDSALFTCE 131 (543)
Q Consensus 57 ~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~ 131 (543)
+|....+..|+.++|.|.+.|. |. ..+.|++||.++................+|. ++.|.|..-.-.+...|+|.
T Consensus 7 ~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~ 86 (102)
T cd05768 7 PPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCV 86 (102)
T ss_pred CcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEE
Confidence 3444444567899999999994 54 6889999999875321111111100001232 23444432222355789999
Q ss_pred Eecc
Q psy3718 132 IKSQ 135 (543)
Q Consensus 132 a~n~ 135 (543)
+...
T Consensus 87 V~H~ 90 (102)
T cd05768 87 VGHE 90 (102)
T ss_pred eEeC
Confidence 9885
No 249
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=97.64 E-value=6.1e-05 Score=58.30 Aligned_cols=36 Identities=25% Similarity=0.537 Sum_probs=32.5
Q ss_pred ceEEEecceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718 506 ARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT 541 (543)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~ 541 (543)
+.+...+..+.+..|++++|.|.+.|.|.|++.|+|
T Consensus 2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k 37 (100)
T cd07693 2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLK 37 (100)
T ss_pred CeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEE
Confidence 456666778999999999999999999999999998
No 250
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=97.64 E-value=5.1e-05 Score=56.53 Aligned_cols=31 Identities=10% Similarity=-0.042 Sum_probs=26.1
Q ss_pred CceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 18 RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
.++|.|.+ |+|.|+|.|.|..|.. .++.|.|
T Consensus 48 ~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 48 SSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred EEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 35899998 9999999999999875 5667665
No 251
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.62 E-value=0.00037 Score=54.53 Aligned_cols=70 Identities=23% Similarity=0.427 Sum_probs=44.8
Q ss_pred eeEeecCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCC----ceeeEEEEeeecCCCc-cEEEEE
Q psy3718 60 NQTSRRGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNG----VLSDLSIKRTERGDSA-LFTCEI 132 (543)
Q Consensus 60 ~~~v~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~D~G-~Y~C~a 132 (543)
......|+.++|.|.+.| .|. .++.|+|||+.+... ....... .++ .++.|.+.. ...|.| .|+|.+
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~-~~~~~p~----~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V 88 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAE-QPNITPE----GDSVSYNVTSTVQVKL-TEDDVHSQVTCEV 88 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccc-ccceeeC----CCCCcEEEEEEEEEEC-ccccccCceEEEE
Confidence 445567899999999998 464 799999999998532 1111111 122 234455553 344444 599999
Q ss_pred ecc
Q psy3718 133 KSQ 135 (543)
Q Consensus 133 ~n~ 135 (543)
...
T Consensus 89 ~H~ 91 (111)
T cd05772 89 QHR 91 (111)
T ss_pred EeC
Confidence 885
No 252
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=97.62 E-value=5.4e-05 Score=56.51 Aligned_cols=29 Identities=21% Similarity=0.525 Sum_probs=27.5
Q ss_pred ceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718 513 DNFTATYTEDIKLPCLTVGVPAPEIIWKT 541 (543)
Q Consensus 513 ~~~~~~~~~~~~l~c~~~g~p~p~~~w~~ 541 (543)
+.+.+..|++++|.|.+.|.|.|.++|+|
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k 31 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSR 31 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEE
Confidence 56899999999999999999999999987
No 253
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.62 E-value=0.0002 Score=55.87 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=44.2
Q ss_pred CCCeEEEEEeeccC-------CceEEEccCC-----eec------------CCCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718 66 GEPSVLQCEAKGEK-------PIGILWNMNN-----KRL------------DPKSDNRYTIREEILPNGVLSDLSIKRTE 121 (543)
Q Consensus 66 g~~~~l~C~~~g~p-------~~~i~W~~~~-----~~i------------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 121 (543)
|.+++|.|...-.| .+.|.|.|.. +.+ ......|..+.... .+....+|.|.+++
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~-~~~~~asL~i~nv~ 80 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYP-KNRYNASLVLSRLR 80 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCC-CCCceEEEEECCCC
Confidence 78999999966332 3789998741 110 11112233332211 11234689999999
Q ss_pred cCCCccEEEEEecc
Q psy3718 122 RGDSALFTCEIKSQ 135 (543)
Q Consensus 122 ~~D~G~Y~C~a~n~ 135 (543)
.+|+|.|.|.....
T Consensus 81 ~~D~G~Y~C~v~~g 94 (110)
T cd05902 81 YSDSGTYRCEVVLG 94 (110)
T ss_pred HHHCEEEEEEEEEC
Confidence 99999999999884
No 254
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.61 E-value=0.00076 Score=51.10 Aligned_cols=69 Identities=17% Similarity=0.264 Sum_probs=43.8
Q ss_pred ecCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718 64 RRGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 64 ~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
..|+.++|.|.+.| .|. .++.|++||..+..... ...... -.++.......-.+...+...|+|.+...
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~-~~~~~~--~~dgTy~~~s~L~~~~~~~~~ysC~V~H~ 82 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVV-STELIP--NGDWTYQILVMLETTPSRGDTYTCVVEHS 82 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCce-ecceEE--CCCCcEEEEEEEEEcCCCCCEEEEEEEeC
Confidence 36899999999999 454 69999999998754210 011111 12333333333344556778999999885
No 255
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=97.60 E-value=0.00011 Score=54.82 Aligned_cols=32 Identities=6% Similarity=0.008 Sum_probs=27.3
Q ss_pred CceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718 18 RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS 49 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~ 49 (543)
...|.|.+ |+|.|+|.|.|..|.. .++.|.|+
T Consensus 49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~ 85 (86)
T cd05862 49 SSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH 85 (86)
T ss_pred eeEEEEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence 35899998 9999999999998875 66788875
No 256
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=97.58 E-value=0.00018 Score=51.22 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=29.2
Q ss_pred ccEEEeecC------CCeEEecCceEEEec----CCeEEEEEEecCCCC
Q psy3718 2 ENFFFYRGF------NPRILLGRVLLPIGE----SSFHFDPELLNPSFN 40 (543)
Q Consensus 2 ~~~~~~~~~------~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~ 40 (543)
|.+.|++.. ..++...+++|.|.+ |+|.|+|.|+|....
T Consensus 13 P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~ 61 (72)
T cd07702 13 PEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYN 61 (72)
T ss_pred CeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccc
Confidence 567888742 134445566999999 999999999997443
No 257
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=97.58 E-value=8.3e-05 Score=57.10 Aligned_cols=38 Identities=29% Similarity=0.603 Sum_probs=31.7
Q ss_pred cCceEEEecceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT 541 (543)
Q Consensus 504 v~~~~~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~ 541 (543)
|.++|...+....+..|+.++|.|.+.|.|.|+++|+|
T Consensus 1 ~~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~ 38 (97)
T cd05869 1 AKPKITYVENQTAMELEEQITLTCEASGDPIPSITWRT 38 (97)
T ss_pred CCceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEE
Confidence 35667666666666678999999999999999999987
No 258
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.57 E-value=0.00027 Score=53.51 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=43.0
Q ss_pred CCeEEEEEeecc-CCceEEEccCCe----ec-----------CCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718 67 EPSVLQCEAKGE-KPIGILWNMNNK----RL-----------DPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC 130 (543)
Q Consensus 67 ~~~~l~C~~~g~-p~~~i~W~~~~~----~i-----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 130 (543)
++++|.|..... ....++|.|... .+ ...-.+|+.+.... ....+|.|.|++.+|+|.|+|
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~---~~d~sI~i~nvt~~D~G~Y~C 77 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNST---REDMSLSFNNATEEDVGLYCC 77 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCC---CCccEEEEcCCCcccCEEEEE
Confidence 468999998643 347889987422 11 00011233322111 123689999999999999999
Q ss_pred EEecc-cce
Q psy3718 131 EIKSQ-KIS 138 (543)
Q Consensus 131 ~a~n~-~~s 138 (543)
...+- .|+
T Consensus 78 ~~~t~P~g~ 86 (96)
T cd05889 78 SLVTYPQGS 86 (96)
T ss_pred EEEeCCCCC
Confidence 98774 444
No 259
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=97.57 E-value=9.5e-05 Score=54.76 Aligned_cols=46 Identities=9% Similarity=-0.062 Sum_probs=31.7
Q ss_pred ccEEEeecCCCe-----EE--ecCceEEEec----CCeEEEEEEecCCCCC-CCceEE
Q psy3718 2 ENFFFYRGFNPR-----IL--LGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLL 47 (543)
Q Consensus 2 ~~~~~~~~~~~~-----~~--~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~ 47 (543)
+.++|++..... .. ..+++|.|.+ |+|.|+|.|.|..|.. .+..|.
T Consensus 24 p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 24 PDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred CcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 568898743321 11 2236899999 9999999999999974 334443
No 260
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=97.57 E-value=6.5e-05 Score=55.14 Aligned_cols=30 Identities=33% Similarity=0.761 Sum_probs=27.7
Q ss_pred cceEEEeecCceeecceecCCCCC-eeeEEe
Q psy3718 512 NDNFTATYTEDIKLPCLTVGVPAP-EIIWKT 541 (543)
Q Consensus 512 ~~~~~~~~~~~~~l~c~~~g~p~p-~~~w~~ 541 (543)
+..+.+..|+++.|.|.+.|.|.| +|+|.|
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k 35 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQ 35 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEE
Confidence 456889999999999999999999 799997
No 261
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=97.54 E-value=0.0001 Score=54.98 Aligned_cols=45 Identities=13% Similarity=-0.081 Sum_probs=33.9
Q ss_pred ccEEEeecCC---CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceE
Q psy3718 2 ENFFFYRGFN---PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLL 46 (543)
Q Consensus 2 ~~~~~~~~~~---~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l 46 (543)
+.++|++..+ .+....++.|.|.+ |+|.|+|.|.|..|.. +++.|
T Consensus 32 ~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 32 YTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred cEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 4578987553 23334578999998 9999999999999986 45554
No 262
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.54 E-value=0.00046 Score=53.96 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=44.4
Q ss_pred CCCeEEEEEeeccC-----------CceEEEccC-----Ce-----ec----------CCCCCCceEEeeeecCCCceee
Q psy3718 66 GEPSVLQCEAKGEK-----------PIGILWNMN-----NK-----RL----------DPKSDNRYTIREEILPNGVLSD 114 (543)
Q Consensus 66 g~~~~l~C~~~g~p-----------~~~i~W~~~-----~~-----~i----------~~~~~~~~~~~~~~~~~~~~~~ 114 (543)
|.+++|.|.....| ...|.|.+- ++ .+ ......|..+..+... ....+
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~-~g~as 80 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPED-QGDAS 80 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCc-CCceE
Confidence 68899999998654 248999874 11 11 0111223333211111 12368
Q ss_pred EEEEeeecCCCccEEEEEecc
Q psy3718 115 LSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 115 L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
|.|.+++.+|+|.|.|...+.
T Consensus 81 L~i~~v~~sD~G~Y~C~V~~g 101 (117)
T cd05901 81 LTIVKLRASDAGVYRCEVMHG 101 (117)
T ss_pred EEEcccccccCEEEEEEEEEC
Confidence 999999999999999999886
No 263
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=97.53 E-value=9.6e-05 Score=53.63 Aligned_cols=24 Identities=21% Similarity=0.012 Sum_probs=21.6
Q ss_pred CceEEEec----CCeEEEEEEecCCCCC
Q psy3718 18 RVLLPIGE----SSFHFDPELLNPSFNG 41 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n~~g~~ 41 (543)
.+.|.|.+ |+|.|+|.|.|..|..
T Consensus 42 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 69 (75)
T cd05750 42 NSELQINKAKLADSGEYTCVVENILGND 69 (75)
T ss_pred eEEEEEccCCcccCeEEEEEEEEcCCce
Confidence 35899999 9999999999999985
No 264
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.52 E-value=0.00036 Score=50.62 Aligned_cols=63 Identities=13% Similarity=0.239 Sum_probs=44.9
Q ss_pred eeEeecCCCeEEEEEeeccC--CceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEec
Q psy3718 60 NQTSRRGEPSVLQCEAKGEK--PIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKS 134 (543)
Q Consensus 60 ~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n 134 (543)
+..+..|++++|+|.....+ .+.|+|...+...- ... ..++ .+|.+..+...|+|.++|.++-
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-------~~~---~~~~--ktL~~~qv~~qdSG~WtC~V~~ 72 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-------QIL---NQDK--KTLNLVQLGPNDSGTWDCIVSV 72 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-------eec---cCCc--cEEEeceeCcccCCEEEEEEEE
Confidence 44678899999999995544 45999996544321 000 0111 3799999999999999999964
No 265
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.52 E-value=0.00017 Score=54.34 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=29.3
Q ss_pred ccEEEeecC--------CCeEEec-CceEEEec----CCeEEEEEEecCCCCC
Q psy3718 2 ENFFFYRGF--------NPRILLG-RVLLPIGE----SSFHFDPELLNPSFNG 41 (543)
Q Consensus 2 ~~~~~~~~~--------~~~~~~~-~g~L~I~~----D~G~Y~C~a~n~~g~~ 41 (543)
+.++|++.. +++++.. +|+|.|.+ |+|.|+|.|.|..+..
T Consensus 34 p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 34 LSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 356776642 2344443 79999999 9999999999976543
No 266
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=97.48 E-value=0.00019 Score=54.47 Aligned_cols=31 Identities=3% Similarity=0.107 Sum_probs=23.7
Q ss_pred CceEEEec----CCeEEEEEEecCCCCCCCceEEE
Q psy3718 18 RVLLPIGE----SSFHFDPELLNPSFNGFPPLLLS 48 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n~~g~~~s~~l~v 48 (543)
+.+|.|.+ |+|.|+|.+.......+.+.|+|
T Consensus 61 ~~~L~I~nV~~~D~G~YtC~~~t~~~~~~~~~~~v 95 (95)
T cd05882 61 ELIISISNVQLSDEGEYTCSIFTMPVRTAKATVTV 95 (95)
T ss_pred eEEEEECCCCcccCEEEEEEEEeeccccEEEEEEC
Confidence 36999999 99999999998443445566654
No 267
>PHA03376 BARF1; Provisional
Probab=97.44 E-value=0.0025 Score=53.11 Aligned_cols=70 Identities=9% Similarity=0.032 Sum_probs=49.9
Q ss_pred eEEEec----CCeEEEEEEecCCCCCC-CceEEEeCCCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCC
Q psy3718 20 LLPIGE----SSFHFDPELLNPSFNGF-PPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNN 89 (543)
Q Consensus 20 ~L~I~~----D~G~Y~C~a~n~~g~~~-s~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~ 89 (543)
+|.|.+ |.|.|+|...-...... --+|.+-.|-.+.+......+..-+..++.|.+.|.|.|.+.|+-+.
T Consensus 88 sLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~ 162 (221)
T PHA03376 88 FLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE 162 (221)
T ss_pred EEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheecccc
Confidence 889998 99999998887432222 23566666665555544434444677899999888999999999653
No 268
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=97.38 E-value=0.00014 Score=55.03 Aligned_cols=30 Identities=17% Similarity=0.392 Sum_probs=27.3
Q ss_pred cceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718 512 NDNFTATYTEDIKLPCLTVGVPAPEIIWKT 541 (543)
Q Consensus 512 ~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~ 541 (543)
+..+.+..|++++|.|.+.|.|.|+|.|+|
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~ 36 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWII 36 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEE
Confidence 455668999999999999999999999998
No 269
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.36 E-value=0.0022 Score=47.44 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=44.9
Q ss_pred cCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718 65 RGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 65 ~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
.++.++|.|.+.|. |. ..|.|+++|..+.......... ...+|.........+...+...|+|.+...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~---~~~dgty~~~s~l~v~~~~~~~ysC~V~H~ 76 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPP---PNSDGTYSVTSSLTVTWNSGDEYSCRVTHE 76 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEE---EETTSEEEEEEEEEEETTTTGGEEEEEEET
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccc---cccccceeeeEEEEecCCCCCEEEEEEEEC
Confidence 38999999999984 54 6899999999875321111111 114555444444445566777999999875
No 270
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.35 E-value=0.0005 Score=50.63 Aligned_cols=62 Identities=21% Similarity=0.303 Sum_probs=40.4
Q ss_pred CeEEEEEeeccCC--ceEEEccCCe--e---cCC-----------CCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718 68 PSVLQCEAKGEKP--IGILWNMNNK--R---LDP-----------KSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT 129 (543)
Q Consensus 68 ~~~l~C~~~g~p~--~~i~W~~~~~--~---i~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 129 (543)
+++|.|.+..... ..+.|++... . +.. ....++.+... ......+|.|.+++.+|+|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~ 78 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKD--TSKNDVSLTISNLRVEDTGTYY 78 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEec--CcCCEEEEEEcCCCHHHCEEEE
Confidence 4789999887654 3889987542 1 100 11234443322 1244578999999999999999
Q ss_pred EE
Q psy3718 130 CE 131 (543)
Q Consensus 130 C~ 131 (543)
|.
T Consensus 79 C~ 80 (81)
T smart00406 79 CA 80 (81)
T ss_pred Ec
Confidence 96
No 271
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.35 E-value=0.00045 Score=52.06 Aligned_cols=47 Identities=13% Similarity=0.023 Sum_probs=33.7
Q ss_pred ccEEEeecCC---------CeEEecCceEEEec----CCeEEEEEEecCCCCCC--CceEEE
Q psy3718 2 ENFFFYRGFN---------PRILLGRVLLPIGE----SSFHFDPELLNPSFNGF--PPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~~---------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~~--s~~l~v 48 (543)
+.++|++... .++....+.|.|.+ |+|.|+|.|.|..+... +..|.|
T Consensus 25 ~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V 86 (89)
T cd04979 25 ASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNV 86 (89)
T ss_pred ceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEE
Confidence 4678887542 24455567899998 99999999998776543 445555
No 272
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.34 E-value=0.00053 Score=51.87 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=27.5
Q ss_pred cceeEeecCCCeEEEEEeec-cCC-ceEEEccCCeecC
Q psy3718 58 LRNQTSRRGEPSVLQCEAKG-EKP-IGILWNMNNKRLD 93 (543)
Q Consensus 58 ~~~~~v~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~ 93 (543)
|.......+..++|.|.|.| .|. .++.|++||..+.
T Consensus 8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~ 45 (96)
T cd07697 8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSI 45 (96)
T ss_pred CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence 34344445678999999999 454 7899999999874
No 273
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.30 E-value=0.00066 Score=51.57 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=43.4
Q ss_pred eecceeEeecCCCeEEEEEeecc--CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecC---CCccEE
Q psy3718 56 IKLRNQTSRRGEPSVLQCEAKGE--KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERG---DSALFT 129 (543)
Q Consensus 56 ~~~~~~~v~~g~~~~l~C~~~g~--p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~---D~G~Y~ 129 (543)
.+|....+..|+.++|.|.+.|. |. ..+.|+||+........ ... ....+|.........+.++ +.-.|+
T Consensus 4 ~pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~-~~~---~~~~dgty~~~s~l~v~~~~w~~g~~ys 79 (96)
T cd07696 4 LPPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASI-QPP---ESHNNATLSVTSTLNVSTDDWISGDTFQ 79 (96)
T ss_pred cCcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEe-ccc---ccCCCCCEEEEEEEEeCHHHccCCCcEE
Confidence 34444556679999999999998 54 78899998743211110 000 0112332222222233333 345899
Q ss_pred EEEecc
Q psy3718 130 CEIKSQ 135 (543)
Q Consensus 130 C~a~n~ 135 (543)
|.+...
T Consensus 80 C~V~H~ 85 (96)
T cd07696 80 CKVTHP 85 (96)
T ss_pred EEEECC
Confidence 999885
No 274
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.30 E-value=0.00044 Score=51.25 Aligned_cols=37 Identities=16% Similarity=0.005 Sum_probs=28.9
Q ss_pred ccEEEeec------CCCeEEecCceEEEec----CCeEEEEEEecCC
Q psy3718 2 ENFFFYRG------FNPRILLGRVLLPIGE----SSFHFDPELLNPS 38 (543)
Q Consensus 2 ~~~~~~~~------~~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~ 38 (543)
+.++|++. ++.++.+.++.|.|.| |+|.|+|.|.+..
T Consensus 25 ~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 25 ARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 35677653 2256778889999999 9999999999864
No 275
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.29 E-value=0.00045 Score=51.27 Aligned_cols=31 Identities=10% Similarity=-0.016 Sum_probs=23.6
Q ss_pred CceEEEec----CCeEEEEEEecCCCCC---CCceEEE
Q psy3718 18 RVLLPIGE----SSFHFDPELLNPSFNG---FPPLLLS 48 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n~~g~~---~s~~l~v 48 (543)
..+|.|.+ |+|.|+|.|.|..+.. .+..|+|
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V 82 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITV 82 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEE
Confidence 35899998 9999999999987632 3445555
No 276
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.28 E-value=0.00047 Score=52.50 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=24.9
Q ss_pred ceEEEec----CCeEEEEEEecCCCCCCCceEEE
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSFNGFPPLLLS 48 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g~~~s~~l~v 48 (543)
.+|.|.+ |+|.|+|.+.+..+...++.|.|
T Consensus 62 ~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~~l~v 95 (95)
T cd07701 62 LSISISDVSLSDEGQYTCSLFTMPVKTSKAYLTV 95 (95)
T ss_pred EEEEECcCCcccCEEEEEEeEeecCccEEEEEEC
Confidence 5899999 99999999999655556677765
No 277
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.27 E-value=0.00044 Score=51.16 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=31.8
Q ss_pred ccEEEeecCCCeEE-ecCceEEEec----CCeEEEEEEecCCCCCCCce
Q psy3718 2 ENFFFYRGFNPRIL-LGRVLLPIGE----SSFHFDPELLNPSFNGFPPL 45 (543)
Q Consensus 2 ~~~~~~~~~~~~~~-~~~g~L~I~~----D~G~Y~C~a~n~~g~~~s~~ 45 (543)
.++.||+..+.... ..+++|.|.+ |+|.|+|.|.|..|...|..
T Consensus 30 ~~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~ 78 (83)
T cd05753 30 YKVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEP 78 (83)
T ss_pred eEEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEeCCceecCCC
Confidence 35788875432221 2356899988 99999999999998765543
No 278
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.21 E-value=0.00059 Score=46.35 Aligned_cols=52 Identities=19% Similarity=0.394 Sum_probs=36.3
Q ss_pred ecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718 64 RRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 64 ~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
..|.+|+|+|...... +.|.+++..+.. .+. .+...+-. +++|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~~~~---i~W~~n~~~~~g-~~~---------------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGDD---IKWKKNDQVSQG-SDE---------------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCCC---ceEEeCCccCCC-CCc---------------eEEeeccC-CCCceEEEEeCCC
Confidence 3589999999976433 999999966642 111 23334444 8899999999763
No 279
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.21 E-value=0.00087 Score=52.64 Aligned_cols=84 Identities=21% Similarity=0.312 Sum_probs=48.3
Q ss_pred CCeEEe-ecceeEeecCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCCc---eeeEEEEeeecCC
Q psy3718 51 PPEFEI-KLRNQTSRRGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGV---LSDLSIKRTERGD 124 (543)
Q Consensus 51 ~p~~~~-~~~~~~v~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D 124 (543)
+|.+.+ .|.......++.++|.|.+.| .|. ..|.|+||+..+............ ..++. ++.|.|....-.|
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~--~~~gTYs~~S~L~v~~~~w~~ 79 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALR--ENTSTYSISSRLRVSATEWFN 79 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceec--CCCCeEEEEEEEEEChHHhcc
Confidence 454433 344444556788999999999 455 699999999987532211111110 01122 2345544332223
Q ss_pred -CccEEEEEeccc
Q psy3718 125 -SALFTCEIKSQK 136 (543)
Q Consensus 125 -~G~Y~C~a~n~~ 136 (543)
...|+|.+....
T Consensus 80 ~~~~ytC~V~H~g 92 (115)
T cd05769 80 PRNTFTCIVQFYG 92 (115)
T ss_pred CCCeEEEEEEEeC
Confidence 568999998753
No 280
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=97.20 E-value=0.00055 Score=51.69 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=32.1
Q ss_pred eEEEecceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718 507 RIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT 541 (543)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~ 541 (543)
++...+..+.+..|+.++|.|.+.|.|.|.++|+|
T Consensus 2 ~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~ 36 (90)
T PF07679_consen 2 VFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYK 36 (90)
T ss_dssp EEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEE
T ss_pred EEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccc
Confidence 45667788999999999999999999999999997
No 281
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.20 E-value=0.88 Score=54.34 Aligned_cols=64 Identities=9% Similarity=0.034 Sum_probs=42.2
Q ss_pred CCeEEEE--EEecCCCCC-CCceEEEeCCC-eEEeecceeEeecCCCeEEEEEeeccCCceEEEccCC
Q psy3718 26 SSFHFDP--ELLNPSFNG-FPPLLLSSAPP-EFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNN 89 (543)
Q Consensus 26 D~G~Y~C--~a~n~~g~~-~s~~l~v~~~p-~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~ 89 (543)
..|.|+- .|.|..|.. .+..+.|..|. -+...+....+..+..+.|.=...........|...+
T Consensus 1482 ~~GtYtVtLTvtN~~Gsst~T~~VtV~~pV~~~tinas~~~vpl~~sV~Fta~~s~Gs~v~ysWdFGD 1549 (2740)
T TIGR00864 1482 SPGDFNIRLAAANEVGKNEATLNVAVKARVRGLTINASLTNVPLNGSVHFEAHLDAGDDVRFSWILCD 1549 (2740)
T ss_pred CCceEEEEEEEECCCCceEEEEEEEEeccccceEEcCCCccccccceEEEEEEccCCCceeEEEEeCC
Confidence 7899988 688888875 34566665543 2444455555666777888754444445788998754
No 282
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.17 E-value=0.00074 Score=51.57 Aligned_cols=31 Identities=6% Similarity=0.053 Sum_probs=24.0
Q ss_pred CceEEEec----CCeEEEEEEecCCCCCCCceEEE
Q psy3718 18 RVLLPIGE----SSFHFDPELLNPSFNGFPPLLLS 48 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n~~g~~~s~~l~v 48 (543)
+.+|.|.+ |+|.|+|.+.+.....+++.|+|
T Consensus 61 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~v 95 (95)
T cd05717 61 ELSISISNVSLSDEGRYTCSLYTMPVQTAKATVTV 95 (95)
T ss_pred eeEEEEccCCcccCEEEEEEEecCCCceEEEEEEC
Confidence 35899999 99999999998765445566654
No 283
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.17 E-value=0.0027 Score=46.25 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=16.2
Q ss_pred CccccccccCc-eeeEEEEe
Q psy3718 457 GRNMYEELKSQ-GRGYLVPR 475 (543)
Q Consensus 457 ~~~~~~~L~p~-~Y~~~v~A 475 (543)
..+.+.+|.|+ .|.|+|+|
T Consensus 57 ~~~~i~~L~~~~~Y~v~v~a 76 (83)
T smart00060 57 TSYTLTGLKPGTEYEFRVRA 76 (83)
T ss_pred cEEEEeCcCCCCEEEEEEEE
Confidence 44556699999 99999999
No 284
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.16 E-value=0.0008 Score=48.97 Aligned_cols=44 Identities=11% Similarity=-0.069 Sum_probs=29.6
Q ss_pred cEEEeecCCCeEEecCceEEEec---CCeEEEEEEecCCCCCCCceEEE
Q psy3718 3 NFFFYRGFNPRILLGRVLLPIGE---SSFHFDPELLNPSFNGFPPLLLS 48 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~L~I~~---D~G~Y~C~a~n~~g~~~s~~l~v 48 (543)
.++|++... .+...+++|.|.+ |+|.|+|.|.|. ..+..+.|.|
T Consensus 32 ~~~W~kng~-~l~~~~~~l~i~~~~~dsG~Y~C~a~~~-~~S~~v~l~V 78 (78)
T cd05752 32 STQWYHNGK-LLETTTNSYRIRAANNDSGEYRCQTQGS-SLSDPVHLEV 78 (78)
T ss_pred cEEEEECCE-EeeccCCeEEEeecccCCEEeEEECCCC-cCCCCEEEeC
Confidence 478887532 2235677999986 999999999985 2223345543
No 285
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.02 E-value=0.0011 Score=49.99 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=28.6
Q ss_pred ccEEEeecCCC------eEEe--cCceEEEec----CCeEEEEEEecCCCCC
Q psy3718 2 ENFFFYRGFNP------RILL--GRVLLPIGE----SSFHFDPELLNPSFNG 41 (543)
Q Consensus 2 ~~~~~~~~~~~------~~~~--~~g~L~I~~----D~G~Y~C~a~n~~g~~ 41 (543)
+.++||++... ++.. .++.|.|.+ |+|.|+|.|.+..|..
T Consensus 30 ~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 30 VELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred CcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 46899885431 2221 235899999 9999999999987653
No 286
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=96.90 E-value=0.00088 Score=51.16 Aligned_cols=30 Identities=30% Similarity=0.596 Sum_probs=27.0
Q ss_pred cceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718 512 NDNFTATYTEDIKLPCLTVGVPAPEIIWKT 541 (543)
Q Consensus 512 ~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~ 541 (543)
+..+.+..|+++.|.|.+.|.|.|++.|+|
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k 35 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKK 35 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEE
Confidence 455677889999999999999999999997
No 287
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=96.90 E-value=0.0016 Score=49.08 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=27.0
Q ss_pred ccEEEeecC------CCeEE-ecCceEEEec----CCe-EEEEEEecCC
Q psy3718 2 ENFFFYRGF------NPRIL-LGRVLLPIGE----SSF-HFDPELLNPS 38 (543)
Q Consensus 2 ~~~~~~~~~------~~~~~-~~~g~L~I~~----D~G-~Y~C~a~n~~ 38 (543)
|.+.|+... +.|+. ..+|+|.|.+ |+| .|.|.|.|..
T Consensus 34 P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 34 LRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred CEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence 345665422 34444 4579999999 999 8999999975
No 288
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.87 E-value=0.0069 Score=45.91 Aligned_cols=67 Identities=15% Similarity=0.319 Sum_probs=38.4
Q ss_pred cCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC---CccEEEEEecc
Q psy3718 65 RGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD---SALFTCEIKSQ 135 (543)
Q Consensus 65 ~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D---~G~Y~C~a~n~ 135 (543)
.++.++|.|.+.|. |. .+|.|+|||.. .......-.+.. .+|.......-.+.+.| .-.|+|.+...
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~---~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~ 86 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQ---SGGLYTASSQLTVPASEWKGKESFYCKVEHP 86 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeC---CCCCEEEEEEEEEeHHHcCCCCcEEEEEEeC
Confidence 46779999999994 54 79999999997 321100001110 12322222222344444 56799999874
No 289
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=96.81 E-value=0.0024 Score=48.50 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=29.1
Q ss_pred cEEEeecC---C---------CeEEecCceEEEec----CCeEEEEEEecCC
Q psy3718 3 NFFFYRGF---N---------PRILLGRVLLPIGE----SSFHFDPELLNPS 38 (543)
Q Consensus 3 ~~~~~~~~---~---------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~ 38 (543)
++.|||+. + .|+...+..|.|.. |+|.|+|++.|..
T Consensus 42 ~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t 93 (104)
T cd05896 42 SLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRNST 93 (104)
T ss_pred eEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECCCC
Confidence 67888862 1 26677788999998 9999999999964
No 290
>KOG3632|consensus
Probab=96.75 E-value=0.0072 Score=62.71 Aligned_cols=143 Identities=21% Similarity=0.270 Sum_probs=97.1
Q ss_pred eEEEEEEEEEcCCCCCCCCccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCc
Q psy3718 218 KTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPF 297 (543)
Q Consensus 218 ~~y~~~v~a~n~~G~~~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~ 297 (543)
..|.+.+.+....|.......+.. +...++ ..|.++++...+..+..++|-+...+ . .. +.|.......
T Consensus 643 ~s~~isvq~ltSrGsqd~lrc~Ll-vgg~a~-vvpsqlrv~n~tqtSa~itwvp~nsn-----~-~H-viyln~eE~~-- 711 (1335)
T KOG3632|consen 643 HSGYISVQRLTSRGSQDQLRCILL-VGGAAP-VVPSQLRVWNATQTSAMITWVPFNSN-----F-LH-VIYLNAEEPR-- 711 (1335)
T ss_pred CceeeehhhhhccCCCCcceeeEe-cccccc-ccchhhhhhhhhchhhheeeeecCCC-----c-ce-eeecCCccCC--
Confidence 356777777788887765544333 333444 58889999999999999999987543 1 11 2232222111
Q ss_pred eEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeC-CC--------CCCCCcceeeeccCCCCCCCCCCcEEEEe-cc
Q psy3718 298 LFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNK-LG--------PGPMSEEVKQYTAEGTPEQPPQDNTCTTL-TS 367 (543)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~-~G--------~s~~s~~~~~~t~~~~p~~~P~~~~~~~~-~~ 367 (543)
........|++.+|.|++.|.++|-+.-. .+ .+.....+.|.|....|+.||.++.+..- ++
T Consensus 712 --------ps~a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~sp 783 (1335)
T KOG3632|consen 712 --------PSVAEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSP 783 (1335)
T ss_pred --------CchhhhhHHHHhccCCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCC
Confidence 11224457788999999999999988644 11 12235567888988888889999888763 56
Q ss_pred CeEEEEccCCCC
Q psy3718 368 QTIRVSWVSPPL 379 (543)
Q Consensus 368 ~~v~l~W~~p~~ 379 (543)
..+.++|.||..
T Consensus 784 g~l~vswrPptl 795 (1335)
T KOG3632|consen 784 GRLEVSWRPPTL 795 (1335)
T ss_pred ceeeeeccCcee
Confidence 789999998843
No 291
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=96.68 E-value=0.0035 Score=43.06 Aligned_cols=38 Identities=16% Similarity=0.053 Sum_probs=26.9
Q ss_pred ccEEEeecCC-----CeEEecCceEEEec----CCeEEEEEEecCCC
Q psy3718 2 ENFFFYRGFN-----PRILLGRVLLPIGE----SSFHFDPELLNPSF 39 (543)
Q Consensus 2 ~~~~~~~~~~-----~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g 39 (543)
+.+.|++... ......++.|.|.+ |+|.|+|.+.|..|
T Consensus 17 ~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 17 PNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 3577876322 12224466899999 99999999999765
No 292
>KOG4152|consensus
Probab=96.65 E-value=0.0078 Score=57.97 Aligned_cols=75 Identities=32% Similarity=0.471 Sum_probs=54.9
Q ss_pred ECCCCCCCEEEEEEEEEeCCCCCCCCcceeeeccC-CCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEE
Q psy3718 316 LSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE-GTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393 (543)
Q Consensus 316 i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~-~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~ 393 (543)
-..|.+++.|.|+|.|+|..|.++++....+.|.. +.|. .|..+++. .+-..+.+.|.+|.- ...|.|..|..+.
T Consensus 651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~-apS~~ri~-k~~eGi~l~weppt~-p~sg~Iieys~yl 726 (830)
T KOG4152|consen 651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPT-APSGARIK-KTIEGISLVWEPPTK-PGSGTIIEYSPYL 726 (830)
T ss_pred ccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCC-Cccccccc-ccccceeecccCCCC-CCCcceEEeehhh
Confidence 36799999999999999999999999999988853 4444 55655543 344578999998732 2256666666553
No 293
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=96.64 E-value=0.0025 Score=49.29 Aligned_cols=28 Identities=11% Similarity=0.161 Sum_probs=23.5
Q ss_pred eEEecCceEEEec----CCeEEEEEEecCCCC
Q psy3718 13 RILLGRVLLPIGE----SSFHFDPELLNPSFN 40 (543)
Q Consensus 13 ~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~ 40 (543)
..+..||+|.|.+ |+|.|+|.+.|..+.
T Consensus 64 ~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~ 95 (105)
T cd05774 64 ETIYPNGSLLIQNVTQKDTGFYTLQTITTNFQ 95 (105)
T ss_pred EEEeCCCcEEEecCCcccCEEEEEEEEeCCcc
Confidence 3446789999999 999999999997644
No 294
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.62 E-value=0.0098 Score=45.06 Aligned_cols=64 Identities=19% Similarity=0.385 Sum_probs=40.2
Q ss_pred cCCCeEEEEEee-ccCCceEEEccCCeecCCCCCCceEEeeeecCCCc---eeeEEEEeeecCCCccEEEEEecc
Q psy3718 65 RGEPSVLQCEAK-GEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGV---LSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 65 ~g~~~~l~C~~~-g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
......+.|.+. |.|.+.|.|+++.. .. .........+|. .+.|.+......|.-.|+|.+.+.
T Consensus 14 ~~~~~va~C~s~~gkP~a~ItW~~~~~-----~~--~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~ 81 (95)
T cd05719 14 GEPVTVATCVSANGKPPATISWETTLG-----GE--AETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHP 81 (95)
T ss_pred CCccEEEEEECCCCcCCCEEEEEeCCC-----Cc--ceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCc
Confidence 345668899995 68999999998711 11 111111122332 356777655566677899999996
No 295
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.57 E-value=0.017 Score=44.79 Aligned_cols=76 Identities=8% Similarity=0.127 Sum_probs=50.7
Q ss_pred ecceeEeecCCCeEEEEEeeccCC---ceEEEccCCe-ec------------CCCCCCceEEeeeecCCCceeeEEEEee
Q psy3718 57 KLRNQTSRRGEPSVLQCEAKGEKP---IGILWNMNNK-RL------------DPKSDNRYTIREEILPNGVLSDLSIKRT 120 (543)
Q Consensus 57 ~~~~~~v~~g~~~~l~C~~~g~p~---~~i~W~~~~~-~i------------~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 120 (543)
++....+.+|..++|.|.++|... -.+.|+|... .+ ......++++.... +...-+|.+.++
T Consensus 4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~--s~ntv~L~l~~L 81 (115)
T cd05721 4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTL--GNEQVNFTLQNL 81 (115)
T ss_pred ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeC--CCCEEEEEEcCC
Confidence 445566788999999999987543 4677887321 10 00123445554442 333468999999
Q ss_pred ecCCCccEEEEEec
Q psy3718 121 ERGDSALFTCEIKS 134 (543)
Q Consensus 121 ~~~D~G~Y~C~a~n 134 (543)
+.+|++.|.|....
T Consensus 82 ~a~DTa~Y~Ca~e~ 95 (115)
T cd05721 82 RANQTDIYFCKIEL 95 (115)
T ss_pred CHHHCeEEEEEeee
Confidence 99999999997754
No 296
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.57 E-value=0.0094 Score=45.20 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=42.9
Q ss_pred EeecceeEeecCCCeEEEEEeecc--C-CceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC--C-ccE
Q psy3718 55 EIKLRNQTSRRGEPSVLQCEAKGE--K-PIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD--S-ALF 128 (543)
Q Consensus 55 ~~~~~~~~v~~g~~~~l~C~~~g~--p-~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D--~-G~Y 128 (543)
+.+|.......++.++|.|.+.|. | ...|.|.++|.. ..... ... ...++..+....-.+..+| + ..|
T Consensus 8 l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t--~~~---~~~dgTys~~S~L~v~~~~W~~g~~y 81 (99)
T cd04986 8 LQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQT--SAE---SDQCGCYSVSSVLPGCAEEWNKGEPF 81 (99)
T ss_pred EECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEc--Ccc---cCCCCCEEEEEEEEeCHHHhcCCCeE
Confidence 344544445578999999999993 4 379999999875 11110 000 1123332222333333433 3 459
Q ss_pred EEEEecc
Q psy3718 129 TCEIKSQ 135 (543)
Q Consensus 129 ~C~a~n~ 135 (543)
+|.+...
T Consensus 82 tC~V~H~ 88 (99)
T cd04986 82 ACTVTHP 88 (99)
T ss_pred EEEEECC
Confidence 9999885
No 297
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=96.55 E-value=0.0031 Score=48.46 Aligned_cols=30 Identities=20% Similarity=0.525 Sum_probs=26.7
Q ss_pred cceEEEeecCceeecceecCCCCC-eeeEEe
Q psy3718 512 NDNFTATYTEDIKLPCLTVGVPAP-EIIWKT 541 (543)
Q Consensus 512 ~~~~~~~~~~~~~l~c~~~g~p~p-~~~w~~ 541 (543)
+..+.+..|+++.|.|.+.|.|.| .|.|+|
T Consensus 8 ~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~ 38 (98)
T cd05758 8 EATQYAILGDKGRVECFIFSTPPPDRIVWTW 38 (98)
T ss_pred CCcEEEeCCCcEEEEEEEcccCCCCEeEEEE
Confidence 456778999999999999999999 599987
No 298
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=96.51 E-value=0.014 Score=45.61 Aligned_cols=89 Identities=30% Similarity=0.374 Sum_probs=53.9
Q ss_pred CCCeeeEEEecCCCeEEEEeeCCCC----CCCC------cceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCC
Q psy3718 250 GPPTHIKVEATDQNTLKVSWSPPER----DHWN------GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSL 319 (543)
Q Consensus 250 ~~P~~~~~~~~~~~~i~l~W~~~~~----~~~~------~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L 319 (543)
+||. +.+ ....+.|.|.+.+|.. ...+ -....|.|.|+..++... .... ......+.|.+|
T Consensus 4 gPP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~--~~~~-----~~~~~~~~l~~L 74 (106)
T PF09294_consen 4 GPPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEK--KKEI-----ETKNSSVTLSDL 74 (106)
T ss_dssp -SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCE--EEEE-----ESSSEEEEEES-
T ss_pred cCCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccc--eEEE-----eecCCEEEEeCC
Confidence 3564 777 4567889999998861 0001 013579999999887621 1111 235567799999
Q ss_pred CCCCEEEEEEEEEeCCC--CCCCCcceeee
Q psy3718 320 KTYTQYSVVVQALNKLG--PGPMSEEVKQY 347 (543)
Q Consensus 320 ~p~t~Y~~~V~a~n~~G--~s~~s~~~~~~ 347 (543)
.|++.|.|+|++....- .|.+|.+.-++
T Consensus 75 ~p~t~YCv~V~~~~~~~~~~s~~S~~~C~~ 104 (106)
T PF09294_consen 75 KPGTNYCVSVQAFSPSQNKNSQPSEPQCIT 104 (106)
T ss_dssp -TTSEEEEEEEEEECSSTEEEEEBSEEEEE
T ss_pred CCCCCEEEEEEEEeccCCCcCCCCCCEeEe
Confidence 99999999999943321 34555554443
No 299
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=96.50 E-value=0.7 Score=42.81 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=50.8
Q ss_pred ceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCccee-eeccCCCC--CCCCCCcEEEEe----ccCeEEEEccCCCCCCC
Q psy3718 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVK-QYTAEGTP--EQPPQDNTCTTL----TSQTIRVSWVSPPLITA 382 (543)
Q Consensus 310 ~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~-~~t~~~~p--~~~P~~~~~~~~----~~~~v~l~W~~p~~~~~ 382 (543)
.-..+.+.++.|+..|.+++.+.|... +.....+. ..|.+... +.-|.+..+... +-++++|.|.+.+.
T Consensus 126 ~~~~f~l~~~~~g~~Yliri~~~~~~e-~~~~~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d--- 201 (300)
T PF10179_consen 126 GLRHFRLSGVKPGERYLIRIQISNSDE-GPSTFKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPD--- 201 (300)
T ss_pred ceEEEEECCCCCCCeEEEEEEccCCCC-CceEEEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCC---
Confidence 456889999999999999998876543 22222233 33333211 235677777544 45799999997532
Q ss_pred CCceEEEEEEEEeC
Q psy3718 383 NGVIKGYKVVYGPS 396 (543)
Q Consensus 383 ~~~i~~Y~v~~~~~ 396 (543)
.. ..|=|..+..
T Consensus 202 -~~-~kYCvy~~~~ 213 (300)
T PF10179_consen 202 -RS-IKYCVYRREE 213 (300)
T ss_pred -CC-ceEEEEEEEe
Confidence 22 4676666554
No 300
>KOG4367|consensus
Probab=96.46 E-value=0.0047 Score=57.78 Aligned_cols=82 Identities=29% Similarity=0.451 Sum_probs=65.1
Q ss_pred cCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCC
Q psy3718 260 TDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGP 339 (543)
Q Consensus 260 ~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~ 339 (543)
...+++.+.|..|... ..+..+|.++....+++. +..+- .+..+.+++.+|.-++.|..+|.++|..|.++
T Consensus 450 t~nns~t~~wkqp~~~--~~~~dg~~leld~g~~g~---frevy----~g~etmctvdglhfns~y~arvka~n~tg~s~ 520 (699)
T KOG4367|consen 450 THNNSATLSWKQPPLS--TVPADGYILELDDGNGGQ---FREVY----VGKETMCTVDGLHFNSTYNARVKAFNKTGVSP 520 (699)
T ss_pred ccCCceEEEeecCCCC--CCCCcceEEEeecCCCCc---eeEEE----ecCceeEEecceecchhHHHHHHHhhccCCCc
Confidence 3578999999976655 568899999886553332 33332 35778999999999999999999999999999
Q ss_pred CCcceeeeccC
Q psy3718 340 MSEEVKQYTAE 350 (543)
Q Consensus 340 ~s~~~~~~t~~ 350 (543)
+|..+..+|..
T Consensus 521 ys~tl~lqts~ 531 (699)
T KOG4367|consen 521 YSKTLVLQTSE 531 (699)
T ss_pred ccceeEeeecc
Confidence 99988887753
No 301
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=96.44 E-value=0.006 Score=50.39 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=45.6
Q ss_pred ccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCC--ccccccCceEEEecceEEEeecCceeecceecCC-CC-
Q psy3718 460 MYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDK--CKNDRVPARIASFNDNFTATYTEDIKLPCLTVGV-PA- 534 (543)
Q Consensus 460 ~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~--~~~~~v~~~~~~~~~~~~~~~~~~~~l~c~~~g~-p~- 534 (543)
.+.+++.. .-.|.+.+ .+..|.... ...+..++.+..++..+....|+.++|.|.+.|. |.
T Consensus 4 ~i~~v~~~D~G~Y~C~~--------------~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~ 69 (139)
T cd05771 4 TLPGLTVHDEGTYICSV--------------STPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLD 69 (139)
T ss_pred EECCCCHHHCEEEEEEE--------------EccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCC
Confidence 44467776 66777777 655554333 2233345566555555555578999999999995 76
Q ss_pred CeeeEEec
Q psy3718 535 PEIIWKTF 542 (543)
Q Consensus 535 p~~~w~~~ 542 (543)
+.|+|+|-
T Consensus 70 ~~i~W~~~ 77 (139)
T cd05771 70 VQVEWTRE 77 (139)
T ss_pred eEEEEEEC
Confidence 59999983
No 302
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.33 E-value=0.025 Score=42.77 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=39.4
Q ss_pred CCCeEEEEEee-ccCCceEEEccCCeecCCCCCCceEEeeeecCCCc---eeeEEEEeeecCCCccEEEEEecc
Q psy3718 66 GEPSVLQCEAK-GEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGV---LSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 66 g~~~~l~C~~~-g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
.....+.|.+. |.|.+.|.|+++.... .........++. .+.|.+......|...|+|.|.+.
T Consensus 15 ~~~~va~C~s~~gkPaa~IsW~~~~~g~-------~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~ 81 (95)
T cd07703 15 IPVPVAKCVSANGRPPARISWSSTLGGN-------ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHE 81 (95)
T ss_pred CccEEEEEEcCCCCCCcEEEEEcCCCCC-------eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCc
Confidence 34568999887 5789999999872111 111111112222 346777665666677899999996
No 303
>KOG1480|consensus
Probab=96.31 E-value=0.00067 Score=68.32 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=71.5
Q ss_pred EEEEEecCCCCCCC--ceEEEe-CCCeEEeecceeEeecCCCeEEEEEe-eccCCceEEEccCCeecCCCCCCceEEeee
Q psy3718 30 FDPELLNPSFNGFP--PLLLSS-APPEFEIKLRNQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIREE 105 (543)
Q Consensus 30 Y~C~a~n~~g~~~s--~~l~v~-~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~ 105 (543)
-+|.|....|...+ +.+.+. ..-.|...|....|..+....|.|.. .+.|...++|++++..++++.+. +...
T Consensus 105 cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~-~~~~-- 181 (909)
T KOG1480|consen 105 CQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANV-IRAS-- 181 (909)
T ss_pred eeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccc-hhhh--
Confidence 35578777774322 222221 23445566777888889999888885 67888999999999999873332 2211
Q ss_pred ecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718 106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS 138 (543)
Q Consensus 106 ~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s 138 (543)
-+.|+|..+..+|.|+|+|+|.|..+.
T Consensus 182 ------d~~li~~~arlsd~~nytc~a~ni~~~ 208 (909)
T KOG1480|consen 182 ------DHNLIISQARLSDSGNYTCEATNIVAK 208 (909)
T ss_pred ------cCCccccchhhhhcccceeeeehhhcc
Confidence 147999999999999999999998654
No 304
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=96.26 E-value=0.0081 Score=45.92 Aligned_cols=31 Identities=13% Similarity=-0.013 Sum_probs=24.9
Q ss_pred CceEEEec----CCeEEEEEEec-CCCCC-CCceEEE
Q psy3718 18 RVLLPIGE----SSFHFDPELLN-PSFNG-FPPLLLS 48 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n-~~g~~-~s~~l~v 48 (543)
+.+|.|.| |+|.|+|.+.| +.|.. +...|.|
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 47999999 99999999999 66653 4566666
No 305
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=96.21 E-value=0.077 Score=41.35 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=54.9
Q ss_pred CCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCC--CCCEEE
Q psy3718 249 SGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLK--TYTQYS 326 (543)
Q Consensus 249 ~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~--p~t~Y~ 326 (543)
..+|.++++... .....|.|+++.. ......|.|+|+..+.. .|....... .....++.+++.. +...|.
T Consensus 22 lp~P~nv~~~s~-nf~~iL~W~~~~~---~~~~~~ytVq~~~~~~~-~W~~v~~C~---~i~~~~Cdlt~~~~~~~~~Y~ 93 (107)
T PF01108_consen 22 LPAPQNVTVDSV-NFKHILRWDPGPG---SPPNVTYTVQYKKYGSS-SWKDVPGCQ---NITETSCDLTDETSDPSESYY 93 (107)
T ss_dssp GSSCEEEEEEEE-TTEEEEEEEESTT---SSSTEEEEEEEEESSTS-CEEEECCEE---EESSSEEECTTCCTTTTSEEE
T ss_pred CCCCCeeEEEEE-CCceEEEeCCCCC---CCCCeEEEEEEEecCCc-ceeecccee---cccccceeCcchhhcCcCCEE
Confidence 347899999877 5568999999554 34568999999944433 332221011 1245788887755 788999
Q ss_pred EEEEEEeCCCC
Q psy3718 327 VVVQALNKLGP 337 (543)
Q Consensus 327 ~~V~a~n~~G~ 337 (543)
++|+|..+...
T Consensus 94 ~rV~A~~~~~~ 104 (107)
T PF01108_consen 94 ARVRAEVGNQT 104 (107)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEEeCCcc
Confidence 99999865443
No 306
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=96.14 E-value=0.0051 Score=44.19 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=24.3
Q ss_pred cEEEe------ecCCCeEEecCceEEEec----CCeEEEEEEec
Q psy3718 3 NFFFY------RGFNPRILLGRVLLPIGE----SSFHFDPELLN 36 (543)
Q Consensus 3 ~~~~~------~~~~~~~~~~~g~L~I~~----D~G~Y~C~a~n 36 (543)
+++|+ ..........++.|.|.+ |.|.|+|+|.|
T Consensus 32 ~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 32 SISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 56777 222233335567999997 99999999987
No 307
>KOG0613|consensus
Probab=96.11 E-value=0.24 Score=54.02 Aligned_cols=171 Identities=13% Similarity=0.079 Sum_probs=94.4
Q ss_pred ceeEEEECCCCCCCEEEEEEEEEeCCCCCC---CCcceeeeccCCCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCce
Q psy3718 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGP---MSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVI 386 (543)
Q Consensus 310 ~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~---~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i 386 (543)
...+++...-.++..|.+++...-..|.+. .+....+.+....|..-+.++.+.......+++.|.-.....+++ .
T Consensus 289 ~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~-~ 367 (1205)
T KOG0613|consen 289 PELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDE-A 367 (1205)
T ss_pred cccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCch-h
Confidence 445666666678888888888876666543 333334444445555555666666666667777776441100110 1
Q ss_pred EEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccC
Q psy3718 387 KGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKS 466 (543)
Q Consensus 387 ~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p 466 (543)
.+|.+.-...... + + ..-...........+.++-+
T Consensus 368 -----------------------------------------~~~~~~~~~~~~~-~-~--~~~~~~~~ts~~~~~~~~~~ 402 (1205)
T KOG0613|consen 368 -----------------------------------------QGYHGEEVSSESL-G-A--LPCPVGTVTSHTYTIKDAGP 402 (1205)
T ss_pred -----------------------------------------eeecccccccccc-c-c--cccccccccCcchhhhhcCc
Confidence 1222211111110 0 0 00001112333345558999
Q ss_pred c-eeeEEEEeCCCCCCCCCCccccccccccCCCccccccCce-------EEEecceEEEeec--CceeecceecCCCCCe
Q psy3718 467 Q-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRVPAR-------IASFNDNFTATYT--EDIKLPCLTVGVPAPE 536 (543)
Q Consensus 467 ~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~v~~~-------~~~~~~~~~~~~~--~~~~l~c~~~g~p~p~ 536 (543)
+ .|..++.| +|..|.-.......+.-. ....+..++...+ +.+.+.|...+.|-|
T Consensus 403 ~e~~~~~~~a--------------~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~- 467 (1205)
T KOG0613|consen 403 GEGYFTRVPA--------------VNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMP- 467 (1205)
T ss_pred ccccccccce--------------eccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCcccc-
Confidence 9 99999999 999998877443333111 1112223334444 889999999999988
Q ss_pred eeEEe
Q psy3718 537 IIWKT 541 (543)
Q Consensus 537 ~~w~~ 541 (543)
++|..
T Consensus 468 ~~~~t 472 (1205)
T KOG0613|consen 468 MTTVT 472 (1205)
T ss_pred ceeEe
Confidence 88764
No 308
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.99 E-value=0.031 Score=41.88 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=41.6
Q ss_pred eecCCCeEEEEEeecc-CC--ceEEEccCCeecCCCCCCceEEeeee-cCCCceeeEEEEeeecCCCc-cEEEEEecc
Q psy3718 63 SRRGEPSVLQCEAKGE-KP--IGILWNMNNKRLDPKSDNRYTIREEI-LPNGVLSDLSIKRTERGDSA-LFTCEIKSQ 135 (543)
Q Consensus 63 v~~g~~~~l~C~~~g~-p~--~~i~W~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~ 135 (543)
..+|.++++.|.+.+. |. .+|.|++....+.... +.-.... ........+++.. +.+|.| .|+|.|.=.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~---f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS---FLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccc---cccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence 3789999999999864 54 7899998666553211 1100000 0011113455555 467777 999999875
No 309
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=95.87 E-value=0.011 Score=45.41 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=24.1
Q ss_pred CceEEEec----CCeEEEEEEec-CCCCC-CCceEEE
Q psy3718 18 RVLLPIGE----SSFHFDPELLN-PSFNG-FPPLLLS 48 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n-~~g~~-~s~~l~v 48 (543)
+++|+|.| |+|.|.|.+.+ +.|.. +...|+|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 56999999 99999999998 55654 4456665
No 310
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=95.82 E-value=0.018 Score=43.65 Aligned_cols=31 Identities=6% Similarity=-0.148 Sum_probs=24.6
Q ss_pred CceEEEec----CCeEEEEEE-ecCCCCC-CCceEEE
Q psy3718 18 RVLLPIGE----SSFHFDPEL-LNPSFNG-FPPLLLS 48 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a-~n~~g~~-~s~~l~v 48 (543)
+.+|.|.| |+|.|+|.. ..+.|.. ++..|+|
T Consensus 59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 59 DATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred ccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 67999999 999999975 6666764 5667766
No 311
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=95.81 E-value=0.0089 Score=44.30 Aligned_cols=28 Identities=25% Similarity=0.561 Sum_probs=25.6
Q ss_pred eEEEeecCceeecceecCCCCCeeeEEe
Q psy3718 514 NFTATYTEDIKLPCLTVGVPAPEIIWKT 541 (543)
Q Consensus 514 ~~~~~~~~~~~l~c~~~g~p~p~~~w~~ 541 (543)
.+.+..|+.+.|.|.+.|.|.|.+.|+|
T Consensus 3 ~~~~~~G~~~~l~C~~~~~p~~~v~W~k 30 (85)
T cd05729 3 LHAVPAGSTVRLKCPASGNPRPTITWLK 30 (85)
T ss_pred eeEecCCCcEEEEEEcCCCCCCeEEEEE
Confidence 3667789999999999999999999987
No 312
>smart00409 IG Immunoglobulin.
Probab=95.80 E-value=0.024 Score=41.66 Aligned_cols=30 Identities=20% Similarity=0.049 Sum_probs=23.0
Q ss_pred ceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
.+|.|.+ |+|.|.|.+.+..+.. ....|.|
T Consensus 51 ~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00409 51 STLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred eEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 5899998 9999999999877764 2344444
No 313
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=95.80 E-value=0.024 Score=41.66 Aligned_cols=30 Identities=20% Similarity=0.049 Sum_probs=23.0
Q ss_pred ceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS 48 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v 48 (543)
.+|.|.+ |+|.|.|.+.+..+.. ....|.|
T Consensus 51 ~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00410 51 STLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred eEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 5899998 9999999999877764 2344444
No 314
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=95.75 E-value=0.49 Score=43.82 Aligned_cols=118 Identities=16% Similarity=0.098 Sum_probs=68.7
Q ss_pred cCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCC
Q psy3718 260 TDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGP 339 (543)
Q Consensus 260 ~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~ 339 (543)
..+..+.+-|.+..+ -....|.|+....+.......... ++-...+.-.+|.++..|...|.+.+..+.-+
T Consensus 81 ~~~~~~~~~w~~~~d----~~~~~Y~i~~~~gD~~f~r~~~~~-----n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~s 151 (343)
T COG3401 81 ERPKSVKVFWSPHPD----VSVGKYIIQRQNGDGKFLRTGLVK-----NRLFVEFIDSDLGHNEKYMELIIAADFQMGKS 151 (343)
T ss_pred cCcceeeecccccCC----CCCCeEEEEEecCchhhhhhhHHH-----hccchhheecccccccceeeeEEeecccccce
Confidence 345679999999874 356788887544332211110111 22234455678999999999999987765332
Q ss_pred CCcceeeeccCCCCCCCCC---CcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeC
Q psy3718 340 MSEEVKQYTAEGTPEQPPQ---DNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPS 396 (543)
Q Consensus 340 ~s~~~~~~t~~~~p~~~P~---~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~ 396 (543)
.+ +.-.+..|...|. ++++.....+.+.|+|+.++.+ ..|+|+-...
T Consensus 152 fs----f~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~------~yy~IY~~~~ 201 (343)
T COG3401 152 FS----FTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEAE------DYYRIYASDS 201 (343)
T ss_pred ee----eeeeecccccCCceeeeeeeecCCCCcceeeccCcccc------ceEEEeccCC
Confidence 22 2222233333333 3344445577899999987533 1677775543
No 315
>KOG0613|consensus
Probab=95.74 E-value=0.47 Score=51.87 Aligned_cols=215 Identities=18% Similarity=0.143 Sum_probs=111.5
Q ss_pred CeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceeeeeeeecc
Q psy3718 68 PSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEAS 147 (543)
Q Consensus 68 ~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~~~~~~v~ 147 (543)
.+.+.|.+ |.|.+...|+++|..+.+....+...... .+.+.|..+-..+.|.|.-.+-|..+....
T Consensus 207 ~v~~v~s~-gqp~~~~~~~~~g~~i~~~~~~~~s~t~e------~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~------ 273 (1205)
T KOG0613|consen 207 RVRAVVSA-GQPEPLERWEILGELIAPGSAPSMSVTLE------ASDRKIQLTLRAPRGPYSAHILGYLIEQRK------ 273 (1205)
T ss_pred eEEEEEec-CCCccchhhhhcccccCCCCccccccccc------hhheeeeEEeecCCCchHHHHhcchhhhcc------
Confidence 34555554 67889999999999998766554443321 135666666667777776544443222100
Q ss_pred cccccceEEEEEEEecccCCCCCCCcEEeeecCCCCcceeEeccCcccccccceeccccccccCCCCccceEEEEEEEEE
Q psy3718 148 GLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAE 227 (543)
Q Consensus 148 ~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~pi~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~p~p~~~w~~y~~~v~a~ 227 (543)
-.....| + +....+.....|.... ..++ ..+.+++...
T Consensus 274 -~~~~~t~----------------------~-------i~~~~~~~~~s~t~~~-------~~~~-----~q~~~~v~~~ 311 (1205)
T KOG0613|consen 274 -HKGGNTK----------------------T-------IQNDGPEPELSWTVAD-------KRQG-----CQDRFKVTEE 311 (1205)
T ss_pred -cCCCccc----------------------c-------ccccCCccccceeeec-------ccCC-----cccceeeeEE
Confidence 0000000 0 1111111111221111 1223 4555555555
Q ss_pred cCCCCCCCCccEE---EeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEee
Q psy3718 228 NEIGSSEPSDTVT---ILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDF 304 (543)
Q Consensus 228 n~~G~~~~s~~~~---~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~ 304 (543)
-..|.+.+..... ....+..+.+.+.++.+.......+.+.|....... .....+|...-....+.. + .+.+
T Consensus 312 ~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~-p~~~~~~~~~~~~~~~~~-~---~~~~ 386 (1205)
T KOG0613|consen 312 APIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQK-PDEAQGYHGEEVSSESLG-A---LPCP 386 (1205)
T ss_pred eeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcC-Cchheeeccccccccccc-c---cccc
Confidence 5555544433221 222234455556666666677788888888765432 122333333222111111 1 1111
Q ss_pred eccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcc
Q psy3718 305 SKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE 343 (543)
Q Consensus 305 ~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~ 343 (543)
......+.+.+.++.++..|..++.|.|..|.....+.
T Consensus 387 -~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~ 424 (1205)
T KOG0613|consen 387 -VGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAE 424 (1205)
T ss_pred -cccccCcchhhhhcCcccccccccceeccCCcccccch
Confidence 11345678889999999999999999999986654433
No 316
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=95.67 E-value=0.016 Score=43.80 Aligned_cols=28 Identities=11% Similarity=-0.059 Sum_probs=23.0
Q ss_pred ecCceEEEec----CCeEEEEEEecCCCCCCC
Q psy3718 16 LGRVLLPIGE----SSFHFDPELLNPSFNGFP 43 (543)
Q Consensus 16 ~~~g~L~I~~----D~G~Y~C~a~n~~g~~~s 43 (543)
..+++|.|.+ |+|.|+|.+....|....
T Consensus 54 ~~~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~ 85 (92)
T cd05741 54 YPNGSLLIQNLTKEDSGTYTLQIISTNGVTEN 85 (92)
T ss_pred cCCceEEEccCCchhcEEEEEEEEcCCCcEEE
Confidence 4678999999 999999999987755433
No 317
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=95.61 E-value=0.014 Score=44.14 Aligned_cols=21 Identities=19% Similarity=0.007 Sum_probs=18.8
Q ss_pred eEEEec----CCeEEEEEEecCCCC
Q psy3718 20 LLPIGE----SSFHFDPELLNPSFN 40 (543)
Q Consensus 20 ~L~I~~----D~G~Y~C~a~n~~g~ 40 (543)
+|+|.+ |+|.|.|.+.|..++
T Consensus 66 ~L~I~~l~~sDsgtY~C~v~~~~~~ 90 (94)
T cd07690 66 PLIIKNLKIEDSDTYICEVEDKKEE 90 (94)
T ss_pred EEEECCCCHHHCEEEEEEECCccce
Confidence 699999 999999999997654
No 318
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=95.57 E-value=8 Score=46.88 Aligned_cols=62 Identities=15% Similarity=0.046 Sum_probs=39.5
Q ss_pred CCeEEEE--EEecCCCCC-CCceEEEeCCCe---EEee-----------cceeEeecCCCeEEEEEeeccCCceEEEcc
Q psy3718 26 SSFHFDP--ELLNPSFNG-FPPLLLSSAPPE---FEIK-----------LRNQTSRRGEPSVLQCEAKGEKPIGILWNM 87 (543)
Q Consensus 26 D~G~Y~C--~a~n~~g~~-~s~~l~v~~~p~---~~~~-----------~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~ 87 (543)
..|.|+- .|.|..|.. .+..+.|+.+-. |... +....+..|..+.|.-.+......++.|..
T Consensus 1566 spGtYtVtLTvtN~~Gs~~~T~~i~V~~~I~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~l~~~~~~GTnvsysW~~ 1644 (2740)
T TIGR00864 1566 SVGTFNIIVTAENDVGAAQASIFLFVLQEIEGLQILGETAEGGGGGVQELDGCYFETNHTVQFHAGFKDGTNLSFSWNA 1644 (2740)
T ss_pred CCceEEEEEEEecCCCccceeEEEEEeecccceEEEeecccccCCcccccccceeccCCEEEeeeccCCCCeeEEEEEE
Confidence 7899987 788988886 556777766532 2211 112455666667776555544567888864
No 319
>PHA03269 envelope glycoprotein C; Provisional
Probab=95.56 E-value=0.23 Score=48.03 Aligned_cols=72 Identities=15% Similarity=0.208 Sum_probs=52.9
Q ss_pred eEEEec----CCeEEEEEEecCC-CCC-CCc--eEEEeCCCeEEeecceeEeecCCCeEEEEEeecc-CC--ceEEEccC
Q psy3718 20 LLPIGE----SSFHFDPELLNPS-FNG-FPP--LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP--IGILWNMN 88 (543)
Q Consensus 20 ~L~I~~----D~G~Y~C~a~n~~-g~~-~s~--~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~--~~i~W~~~ 88 (543)
.|.|.+ ++|.|+-+..+.. +.. .+. .|.+..+|.+.+. ..-+..|++..-.|.+..+ |+ ..+.|++|
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n 367 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVI--GDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSN 367 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 699998 8999998876432 332 334 4555677765553 3456889999999999774 43 68999999
Q ss_pred CeecC
Q psy3718 89 NKRLD 93 (543)
Q Consensus 89 ~~~i~ 93 (543)
+.++.
T Consensus 368 g~~V~ 372 (566)
T PHA03269 368 FGNIG 372 (566)
T ss_pred CcccC
Confidence 99985
No 320
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=95.49 E-value=0.037 Score=43.39 Aligned_cols=32 Identities=16% Similarity=0.027 Sum_probs=22.7
Q ss_pred CceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718 18 RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS 49 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~ 49 (543)
+.+|+|.+ |+|.|.|.+.+...-. ....|.|.
T Consensus 73 ~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 73 DATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred CcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 45999999 9999999999653332 23455553
No 321
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=95.45 E-value=0.03 Score=38.73 Aligned_cols=14 Identities=21% Similarity=0.204 Sum_probs=13.3
Q ss_pred EEEec----CCeEEEEEE
Q psy3718 21 LPIGE----SSFHFDPEL 34 (543)
Q Consensus 21 L~I~~----D~G~Y~C~a 34 (543)
|.|.+ |+|.|+|.|
T Consensus 47 L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 47 LTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEESSCTGGGTEEEEEEE
T ss_pred EEEccCCHHHCEEEEEEC
Confidence 99999 999999986
No 322
>PHA03271 envelope glycoprotein C; Provisional
Probab=95.44 E-value=0.27 Score=46.57 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=53.3
Q ss_pred eEEEec----CCeEEEEEEecCCCCC-CC--ceEEE-eCCCeEEeecceeEeecCCCeEEEEEeecc-CC--ceEEEccC
Q psy3718 20 LLPIGE----SSFHFDPELLNPSFNG-FP--PLLLS-SAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP--IGILWNMN 88 (543)
Q Consensus 20 ~L~I~~----D~G~Y~C~a~n~~g~~-~s--~~l~v-~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~--~~i~W~~~ 88 (543)
+|.|.+ |+|.|+-...+..-.. .. ..+.| +.||.+.+.+ .-+..|++..-.|.+... |+ ..+.|++|
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n 285 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSWRQN 285 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 889999 8998877666655443 22 23344 6677666543 335789999999999874 43 68999999
Q ss_pred CeecCCCC
Q psy3718 89 NKRLDPKS 96 (543)
Q Consensus 89 ~~~i~~~~ 96 (543)
|.++....
T Consensus 286 G~~V~~~~ 293 (490)
T PHA03271 286 GNIATPRK 293 (490)
T ss_pred CccccCcc
Confidence 99886443
No 323
>PHA02633 hypothetical protein; Provisional
Probab=95.26 E-value=0.017 Score=38.60 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=21.3
Q ss_pred eeEEEEeeecCCCccEEEEEecc
Q psy3718 113 SDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 113 ~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
..|.|.++..+|+|+|.|..+|.
T Consensus 18 ~nLwilpa~~sDSGiYiC~~rn~ 40 (63)
T PHA02633 18 NNMLILNPTQSDSGIYMCITKNE 40 (63)
T ss_pred ccEEEeccccccCcEEEEEEcCC
Confidence 47999999999999999999985
No 324
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=95.24 E-value=0.02 Score=44.66 Aligned_cols=33 Identities=15% Similarity=0.016 Sum_probs=25.2
Q ss_pred CceEEEec----CCeEEEEEEecCCCCC-CCceEEEeC
Q psy3718 18 RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSA 50 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~ 50 (543)
+.+|+|.+ |+|.|.|.+.+..+.. ....|.|++
T Consensus 67 ~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 67 DASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred cceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEEE
Confidence 45999999 9999999999875543 445676653
No 325
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.16 E-value=0.14 Score=38.60 Aligned_cols=67 Identities=16% Similarity=0.300 Sum_probs=44.8
Q ss_pred eeEeecCCCeEE-EEEee-ccCCceEEEccCCeecC-----CCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEE
Q psy3718 60 NQTSRRGEPSVL-QCEAK-GEKPIGILWNMNNKRLD-----PKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEI 132 (543)
Q Consensus 60 ~~~v~~g~~~~l-~C~~~-g~p~~~i~W~~~~~~i~-----~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 132 (543)
...+..|+.+.+ .|.+. |.|.+.|.|+.+..-.. ...+..+++ .+.|.+......|.-.++|.+
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV---------~S~~~l~p~r~d~G~~vtC~V 80 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTV---------TSEYIWVPSRHANGHPLTCVV 80 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEE---------EEEEEEEeCHHHCCcEEEEEE
Confidence 356788999999 99976 56889999997632211 011122222 245666666666788999999
Q ss_pred ecc
Q psy3718 133 KSQ 135 (543)
Q Consensus 133 ~n~ 135 (543)
...
T Consensus 81 ~H~ 83 (97)
T cd07704 81 SHP 83 (97)
T ss_pred eCc
Confidence 885
No 326
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=95.15 E-value=0.031 Score=43.55 Aligned_cols=31 Identities=13% Similarity=0.008 Sum_probs=24.1
Q ss_pred ceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS 49 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~ 49 (543)
.+|.|.+ |+|.|.|.+.+..+.. ....|.|.
T Consensus 68 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 68 ASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence 3899999 9999999999876654 34566664
No 327
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=95.06 E-value=0.021 Score=43.96 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=19.3
Q ss_pred ceEEEec----CCeEEEEEEecCCCC
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSFN 40 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g~ 40 (543)
.+|.|.+ |+|.|.|.+.|..+.
T Consensus 65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~ 90 (100)
T cd05713 65 VALRIHNVRASDEGLYTCFFQSDGFY 90 (100)
T ss_pred EEEEEEcCChhhCEEEEEEEecCCcE
Confidence 4899999 999999999987654
No 328
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=95.00 E-value=0.028 Score=44.44 Aligned_cols=25 Identities=16% Similarity=0.017 Sum_probs=21.5
Q ss_pred cCceEEEec----CCeEEEEEEecCCCCC
Q psy3718 17 GRVLLPIGE----SSFHFDPELLNPSFNG 41 (543)
Q Consensus 17 ~~g~L~I~~----D~G~Y~C~a~n~~g~~ 41 (543)
.+.+|.|.| |+|.|+|.+.|.-+..
T Consensus 78 ~daSI~I~nv~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 78 KDGSIVIHNLDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred CeeEEEEccCCcccCEEEEEEEEcCCCcC
Confidence 456999999 9999999999987753
No 329
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=94.91 E-value=0.038 Score=42.20 Aligned_cols=27 Identities=11% Similarity=0.041 Sum_probs=22.6
Q ss_pred CceEEEec----CCeEEEEEEecCCCCCCCc
Q psy3718 18 RVLLPIGE----SSFHFDPELLNPSFNGFPP 44 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n~~g~~~s~ 44 (543)
+++|+|.+ |+|.|.|.+.+..|...+.
T Consensus 60 ~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~ 90 (97)
T cd05775 60 DYSLQISNLKMEDAGSYRAEINTKNGVTITK 90 (97)
T ss_pred ceeEEECCCchHHCEEEEEEEEcCCCCeEEE
Confidence 37999999 9999999999987765443
No 330
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=94.81 E-value=0.082 Score=38.37 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=27.4
Q ss_pred ccEEEeecCC-----------CeEEecCceEEEec----CCeEEEEEEecCCCCC
Q psy3718 2 ENFFFYRGFN-----------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG 41 (543)
Q Consensus 2 ~~~~~~~~~~-----------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~ 41 (543)
..+.||++.. ++.....++|.|.- |.+.|+|.|.|..+..
T Consensus 15 a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 15 ATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred CeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 4578887543 12222334677766 8899999999998875
No 331
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=94.78 E-value=0.059 Score=37.05 Aligned_cols=50 Identities=16% Similarity=0.348 Sum_probs=35.4
Q ss_pred cCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEec
Q psy3718 65 RGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKS 134 (543)
Q Consensus 65 ~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n 134 (543)
..+.+.|.|.+. -+|.|++ |..+....+ .+|.+-++..+-.|.|.|.+++
T Consensus 5 ~~~~V~L~C~~~----tsi~W~k-G~~~~~~~~---------------~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNGA----TNITWKK-GKEILEVSN---------------TLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecCC----CcEEEec-Ccccccccc---------------cEEeccCcccCCCcceEecCcc
Confidence 346789999762 4699999 665532221 2466677777778999999987
No 332
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=94.70 E-value=0.075 Score=41.64 Aligned_cols=31 Identities=16% Similarity=0.005 Sum_probs=23.7
Q ss_pred ceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS 49 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~ 49 (543)
.+|+|.+ |+|.|.|.+....+.. ....|.|.
T Consensus 72 asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 72 ASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred EEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 4899999 9999999999865443 44566664
No 333
>PHA03270 envelope glycoprotein C; Provisional
Probab=94.59 E-value=0.47 Score=45.35 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=55.1
Q ss_pred eEEEec----CCeEEEEEEecCCCCC-CC--ceEEEeCCCeEEeecceeEeecCCCeEEEEEeecc-CC--ceEEEccCC
Q psy3718 20 LLPIGE----SSFHFDPELLNPSFNG-FP--PLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP--IGILWNMNN 89 (543)
Q Consensus 20 ~L~I~~----D~G~Y~C~a~n~~g~~-~s--~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~--~~i~W~~~~ 89 (543)
.|.|.. .+|.|+-...+..+.. .. ..|....+|.+.+.+ .-+..|++..-.|.+..+ |+ ..+.|++|+
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng 260 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAFRWFEGG 260 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 488988 7899999988876643 33 344456788766543 345789999999999774 43 689999999
Q ss_pred eecCC
Q psy3718 90 KRLDP 94 (543)
Q Consensus 90 ~~i~~ 94 (543)
.++..
T Consensus 261 ~~V~~ 265 (466)
T PHA03270 261 DEVFA 265 (466)
T ss_pred ccccC
Confidence 99853
No 334
>KOG4597|consensus
Probab=94.52 E-value=0.032 Score=53.39 Aligned_cols=80 Identities=11% Similarity=0.045 Sum_probs=57.0
Q ss_pred EeecceeEeecCCCeEEEEEeeccCCceEEEcc---CCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718 55 EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM---NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE 131 (543)
Q Consensus 55 ~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 131 (543)
...|.-..+-++++..+.|.+.|.+.+.|+|.+ |++.+....+. . +. ...-..+..|.|.+....|+|.|+|.
T Consensus 200 ~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq-~-~e--~p~vtstcql~ic~ewq~~a~w~tCs 275 (560)
T KOG4597|consen 200 VDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQ-T-VE--NPVVTSTCQLVICNEWQADAGWYTCS 275 (560)
T ss_pred ccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCcc-c-cC--CcceeeeeeEEEcchhhcCCCceeec
Confidence 334556778899999999999999999999975 33332221111 1 10 01123457899999999999999999
Q ss_pred Eecccce
Q psy3718 132 IKSQKIS 138 (543)
Q Consensus 132 a~n~~~s 138 (543)
|.+.+|-
T Consensus 276 ~rcg~g~ 282 (560)
T KOG4597|consen 276 ARCGAGF 282 (560)
T ss_pred cccccce
Confidence 9998665
No 335
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=94.50 E-value=0.045 Score=41.88 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=22.6
Q ss_pred CceEEEec----CCeEEEEEEec-CCCCC-CCceEEE
Q psy3718 18 RVLLPIGE----SSFHFDPELLN-PSFNG-FPPLLLS 48 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n-~~g~~-~s~~l~v 48 (543)
+.+|+|.+ |+|.|.|.+.+ ..|.. ....|.|
T Consensus 61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 61 DATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred ceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence 46999999 99999999875 44554 3345554
No 336
>PHA03273 envelope glycoprotein C; Provisional
Probab=94.36 E-value=0.64 Score=44.95 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=55.7
Q ss_pred eEEEec----CCeEEEEEEecCCCCC-CCceEEE--eCCCeEEeecceeEeecCCCeEEEEEeecc-CC--ceEEEccCC
Q psy3718 20 LLPIGE----SSFHFDPELLNPSFNG-FPPLLLS--SAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP--IGILWNMNN 89 (543)
Q Consensus 20 ~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v--~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~--~~i~W~~~~ 89 (543)
.|.|.. ++|.|+-...+..|.. ....++| ..+|.+.+.+ .-+..|++..-.|.+... |+ ..+.|++||
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg 276 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKNA 276 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 399998 8999999887766653 4455555 6788766543 446789999999999774 43 689999999
Q ss_pred eecC
Q psy3718 90 KRLD 93 (543)
Q Consensus 90 ~~i~ 93 (543)
.++.
T Consensus 277 ~~V~ 280 (486)
T PHA03273 277 KEVD 280 (486)
T ss_pred eecc
Confidence 9986
No 337
>KOG4367|consensus
Probab=94.28 E-value=0.031 Score=52.49 Aligned_cols=75 Identities=15% Similarity=0.085 Sum_probs=55.9
Q ss_pred cceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCc
Q psy3718 408 CTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDE 486 (543)
Q Consensus 408 ~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~ 486 (543)
+++++|+|..| .....+.+||.++....++ +...++- ..+.+-.++.||.-+ .|.-+|.|
T Consensus 452 nns~t~~wkqp--~~~~~~~dg~~leld~g~~--g~frevy----~g~etmctvdglhfns~y~arvka----------- 512 (699)
T KOG4367|consen 452 NNSATLSWKQP--PLSTVPADGYILELDDGNG--GQFREVY----VGKETMCTVDGLHFNSTYNARVKA----------- 512 (699)
T ss_pred CCceEEEeecC--CCCCCCCcceEEEeecCCC--CceeEEE----ecCceeEEecceecchhHHHHHHH-----------
Confidence 47899999977 5566788999999877654 3343332 123333455599999 99999999
Q ss_pred cccccccccCCCcccccc
Q psy3718 487 TLYSRHRGESDKCKNDRV 504 (543)
Q Consensus 487 ~~~~~~~G~g~~~~~~~v 504 (543)
.|..|+++.|++.-.
T Consensus 513 ---~n~tg~s~ys~tl~l 527 (699)
T KOG4367|consen 513 ---FNKTGVSPYSKTLVL 527 (699)
T ss_pred ---hhccCCCcccceeEe
Confidence 999999999776544
No 338
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.11 E-value=0.076 Score=47.16 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=35.8
Q ss_pred CceEEEccC-CeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718 80 PIGILWNMN-NKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 80 ~~~i~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
.|...|..+ |+.+. .+.++.+.. . +.|.+.+...+++|.|+|..+-.
T Consensus 12 DP~y~W~GP~g~~l~--gn~~~nIT~----T---G~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLS--GNSYVNITE----T---GKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCceEEECCCCcccC--CCCeEEEcc----C---ceEEeeccccccCCceEEEEEEE
Confidence 488999975 44543 555666653 3 47999999999999999998875
No 339
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=94.06 E-value=0.68 Score=35.58 Aligned_cols=84 Identities=21% Similarity=0.391 Sum_probs=56.1
Q ss_pred CCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCce---eEEEEC--CCCCC
Q psy3718 248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKE---HHLTLS--SLKTY 322 (543)
Q Consensus 248 p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~--~L~p~ 322 (543)
|++.|.++.+.......+...|++.... + ....|++.|...+ . .+..... ......+. +.+.+. +..-+
T Consensus 7 ~p~~P~~~~C~S~~~etftC~W~~g~~~--~-l~~~y~L~Y~~~~-~-~~~eCp~-~~~~~~ns~~~~~C~F~~~~t~lf 80 (104)
T PF09067_consen 7 PPEKPENLKCFSREMETFTCFWEPGSEG--N-LPTNYTLFYKKEG-E-EWKECPD-YSTSGPNSTVRHICYFPKSDTSLF 80 (104)
T ss_dssp HCCCCEEEEEEBSSSS-EEEEEEEESSS--T-STCEEEEEEEETT-S-EEEEESE-SSTTETTEEEEEEEEE-CCGCSSS
T ss_pred CCCCCccCccCCCCCCcEEEEeeCCCCC--C-CCCcEEEEEEeCC-C-CCccCCC-eEecCCCCceeEEEEcCCCCeEEE
Confidence 5678999999999999999999998764 2 2344999998876 2 2222211 11111122 225554 78999
Q ss_pred CEEEEEEEEEeCCCC
Q psy3718 323 TQYSVVVQALNKLGP 337 (543)
Q Consensus 323 t~Y~~~V~a~n~~G~ 337 (543)
+.|.++|.|.|..|.
T Consensus 81 ~~y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 81 VPYCIQVEATNALGS 95 (104)
T ss_dssp SEEEEEEEEEETTEE
T ss_pred EEEEEEEEeccCCCc
Confidence 999999999998763
No 340
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=93.98 E-value=0.084 Score=38.30 Aligned_cols=27 Identities=22% Similarity=0.605 Sum_probs=25.1
Q ss_pred EEEeecCceeecceecCCCCCeeeEEe
Q psy3718 515 FTATYTEDIKLPCLTVGVPAPEIIWKT 541 (543)
Q Consensus 515 ~~~~~~~~~~l~c~~~g~p~p~~~w~~ 541 (543)
..+..|+.+.|.|.+.|.|.+++.|+|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~ 35 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYK 35 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeee
Confidence 557899999999999999999999997
No 341
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=93.94 E-value=0.1 Score=39.55 Aligned_cols=31 Identities=6% Similarity=0.028 Sum_probs=22.9
Q ss_pred CceEEEec----CCeEEEEEEecCCCCCCCceEEE
Q psy3718 18 RVLLPIGE----SSFHFDPELLNPSFNGFPPLLLS 48 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n~~g~~~s~~l~v 48 (543)
+.+|.|.| |+|.|+|...+.-.-...+.+.|
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 57999999 99999998877543334455554
No 342
>KOG4228|consensus
Probab=93.80 E-value=0.36 Score=51.97 Aligned_cols=223 Identities=16% Similarity=0.134 Sum_probs=132.9
Q ss_pred EEEEEEcCCCCCCCCccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEE
Q psy3718 222 IRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFET 301 (543)
Q Consensus 222 ~~v~a~n~~G~~~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~ 301 (543)
|.|.+....|.+.....+.+. ..|+ .|....+......+....|..... ....|.+.++..... .....
T Consensus 2 Y~~~~~~~~~~~~~~~~v~v~---~~p~-~~~~~~vt~~~~~~~~~~~~~~~t-----~~~~y~v~~~~~~s~--~~~~~ 70 (1087)
T KOG4228|consen 2 YTCLARSGLGPGELITYVRVN---GGPP-GPSTPNVTGSTATSWVQAELLGST-----WPNYYQVIFKALSSG--YGYID 70 (1087)
T ss_pred eeeeecccCCCccceEEEEec---CCCC-CCCCcccccccccceeehhhccCC-----ChhhhheeeeEeccC--cceee
Confidence 567777777766544444443 2233 222455666677888888888753 456777877766554 22222
Q ss_pred EeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcceeeeccCCCCCCCCCCcEEEEeccCeEEEEccCCCC--
Q psy3718 302 VDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPL-- 379 (543)
Q Consensus 302 ~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~-- 379 (543)
. .....+....+.+...|.+ .++|..|.+..+.+..-++.+..+...+....+.......+.+.|.++..
T Consensus 71 ~------~~~~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (1087)
T KOG4228|consen 71 V------DLTTRLSYPCLSPPSFLEL--VEVNTIGRAPFQCPVAPRTGEQATLSLQRDVQALMLSAATAHVNWRRFSATV 142 (1087)
T ss_pred c------cceeecccCCCCCcchhhh--hhcccccccccccccCCccccccccccccchhhhhhhhhhhccCcccccccc
Confidence 2 1334466778888888888 88888888888888777777666655666555555566667777765411
Q ss_pred ------CCCCCceEEEEEEEEeCCccc-CCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeee
Q psy3718 380 ------ITANGVIKGYKVVYGPSDTWY-GDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCT 452 (543)
Q Consensus 380 ------~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~ 452 (543)
....++. .+.+......+.. .........+++++|.++ . ...+..|++.+...+.. .... .
T Consensus 143 ~~~~~~~~~~~~~-~t~i~i~~~~~~p~~~~~~~~~~~it~~w~~~--~--~~~~~~ykl~~~~~d~~-~~~~------v 210 (1087)
T KOG4228|consen 143 GPLAIASPGLGPP-STYIQITTNANSPIQPGEEEEYTTITGSWSPP--H--AVSLDTYKLLHLDPDTG-YEIS------V 210 (1087)
T ss_pred cccccCCcccCCC-CceEEEeccCCCCCCCCcceEEEEEEecCCCC--C--cccchhhhhhhcCCccc-ceee------e
Confidence 1123333 3333333322111 111222278999999876 3 55778899888777543 1111 1
Q ss_pred eCCCCccccc-cccCc-eeeEEEEe
Q psy3718 453 WDPRGRNMYE-ELKSQ-GRGYLVPR 475 (543)
Q Consensus 453 ~~~~~~~~~~-~L~p~-~Y~~~v~A 475 (543)
...+...-.+ ++.|- .|.+++.+
T Consensus 211 ~~~~~~~~~t~~~~~~~~~~~~~ae 235 (1087)
T KOG4228|consen 211 TLTPPGSGGTGDLGPPSISRFKCAE 235 (1087)
T ss_pred eccCCCCCcccCCCCcccccccccC
Confidence 1233333333 88888 99999999
No 343
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=93.67 E-value=0.083 Score=41.82 Aligned_cols=24 Identities=13% Similarity=0.042 Sum_probs=20.5
Q ss_pred CceEEEec----CCeEEEEEEecCCCCC
Q psy3718 18 RVLLPIGE----SSFHFDPELLNPSFNG 41 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n~~g~~ 41 (543)
+.+|.|.+ |+|.|.|.+.|..+..
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~ 105 (115)
T cd05880 78 DASILIWQLQPTDNGTYTCQVKNPPDVH 105 (115)
T ss_pred ceEEEEeeCChhhCEEEEEEEEeCCCCC
Confidence 34799999 9999999999987753
No 344
>PHA02982 hypothetical protein; Provisional
Probab=93.64 E-value=0.12 Score=43.94 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=52.6
Q ss_pred eeEeecCCCeEEEEEeec-cCCceEEEccCCe-ecCCCCCCceEEe------------eeecCCCceeeEEEEeeecCCC
Q psy3718 60 NQTSRRGEPSVLQCEAKG-EKPIGILWNMNNK-RLDPKSDNRYTIR------------EEILPNGVLSDLSIKRTERGDS 125 (543)
Q Consensus 60 ~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~-~i~~~~~~~~~~~------------~~~~~~~~~~~L~i~~~~~~D~ 125 (543)
++...+|+++.|.|.... +.-....|+.++. -+....+....+. ....-++..++|+|+++..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 466778999999999543 3346788997543 2321111122221 1122246678999999999999
Q ss_pred ccEEEEEecccce
Q psy3718 126 ALFTCEIKSQKIS 138 (543)
Q Consensus 126 G~Y~C~a~n~~~s 138 (543)
|=|+|+|....+.
T Consensus 113 GCYtc~~ks~~~k 125 (251)
T PHA02982 113 GCFTCEAKDAEGK 125 (251)
T ss_pred CceEEEEecCCCc
Confidence 9999999986544
No 345
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=93.49 E-value=0.18 Score=39.58 Aligned_cols=32 Identities=16% Similarity=-0.040 Sum_probs=24.5
Q ss_pred CceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718 18 RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS 49 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~ 49 (543)
+-+|.|.+ |+|.|.|...+..... .+..|.|.
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 45999999 9999999999875543 44566664
No 346
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=93.29 E-value=0.16 Score=37.19 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=16.5
Q ss_pred eEEEec----CCeEEEEEEecCCCCC
Q psy3718 20 LLPIGE----SSFHFDPELLNPSFNG 41 (543)
Q Consensus 20 ~L~I~~----D~G~Y~C~a~n~~g~~ 41 (543)
.|.|.. |.|.|+|.|.|.....
T Consensus 47 ~L~i~~~~~~~~~~y~C~a~n~~l~~ 72 (82)
T cd05759 47 TLPITPSDHDTGRTFTCRARNEALPT 72 (82)
T ss_pred EEEEeCceecCCCEEEEEEcCccCCC
Confidence 466666 6779999999976543
No 347
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=93.28 E-value=3.1 Score=38.66 Aligned_cols=128 Identities=19% Similarity=0.128 Sum_probs=71.7
Q ss_pred cCCCCccceEEEEEEEEEcCCCCCCCCccEE-EeccCC--CCCCCCeeeEEEec----CCCeEEEEeeCCCCCCCCccee
Q psy3718 210 VPAPEIIWKTYHIRIVAENEIGSSEPSDTVT-ILTAEE--APSGPPTHIKVEAT----DQNTLKVSWSPPERDHWNGVIQ 282 (543)
Q Consensus 210 ~p~p~~~w~~y~~~v~a~n~~G~~~~s~~~~-~~t~~~--~p~~~P~~~~~~~~----~~~~i~l~W~~~~~~~~~~~i~ 282 (543)
.|+ ..|.+++.+.|.... .....+. ..+... .-|.-|.+..+... +-+++.|.|.+..+. . .
T Consensus 136 ~~g-----~~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~----~-~ 204 (300)
T PF10179_consen 136 KPG-----ERYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDR----S-I 204 (300)
T ss_pred CCC-----CeEEEEEEccCCCCC-ceEEEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCC----C-c
Confidence 677 889999987764432 1122222 222221 22345667766543 348999999986543 2 5
Q ss_pred EEEEEEEEcCCC-----------------CCceEEEEee--ecc-------CCceeEEEECCCCCCCEEEEEEEEEeCCC
Q psy3718 283 GYYVGYKETSTD-----------------KPFLFETVDF--SKE-------EGKEHHLTLSSLKTYTQYSVVVQALNKLG 336 (543)
Q Consensus 283 ~y~v~~~~~~~~-----------------~~~~~~~~~~--~~~-------~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G 336 (543)
.|.|..+..... .....+.+.. .+. ......-+|.+|+||+.|.|.|.+.-..|
T Consensus 205 kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~~G 284 (300)
T PF10179_consen 205 KYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNGPSG 284 (300)
T ss_pred eEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEEEecCCC
Confidence 788876654332 0000111111 111 11123457999999999999999987666
Q ss_pred CCCCCcceeeec
Q psy3718 337 PGPMSEEVKQYT 348 (543)
Q Consensus 337 ~s~~s~~~~~~t 348 (543)
.+-+-....+.|
T Consensus 285 ~sl~Y~s~~VkT 296 (300)
T PF10179_consen 285 QSLPYRSKWVKT 296 (300)
T ss_pred ceeecceEEEEe
Confidence 554444444444
No 348
>KOG4152|consensus
Probab=93.03 E-value=0.68 Score=45.24 Aligned_cols=71 Identities=21% Similarity=0.402 Sum_probs=52.8
Q ss_pred cceEEEEEEEEEcCCCCCCCCccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEE
Q psy3718 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGY 288 (543)
Q Consensus 216 ~w~~y~~~v~a~n~~G~~~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~ 288 (543)
.-..|+|+|.+.|..|.+.++..+...+....-+.+|..+++... -..+.+.|+++.... .+.|..|..+.
T Consensus 656 ~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~k~-~eGi~l~weppt~p~-sg~Iieys~yl 726 (830)
T KOG4152|consen 656 TGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIKKT-IEGISLVWEPPTKPG-SGTIIEYSPYL 726 (830)
T ss_pred cccceeeeeeeeeccCCCchhhheeeeeccCCCCCCccccccccc-ccceeecccCCCCCC-CcceEEeehhh
Confidence 338999999999999999999888777654444456766665533 346899999997764 67777777654
No 349
>PHA03042 CD47-like protein; Provisional
Probab=92.90 E-value=0.22 Score=44.47 Aligned_cols=59 Identities=25% Similarity=0.363 Sum_probs=41.6
Q ss_pred ecCCCeEEEEEeecc-----CCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718 64 RRGEPSVLQCEAKGE-----KPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 64 ~~g~~~~l~C~~~g~-----p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
.=.+++.+.|.+... ....+.|..++..+...++. ..++|..... ..-.|+|+|.|.+.
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------------n~aSL~~~f~-~~l~GNYTCEv~~l 92 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------------NTSSLKFNFS-KNLSGNYTCEAINK 92 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------------cceEEEEecc-ccCCCceeEEEeec
Confidence 347899999998764 45789999999887432221 1146766553 34479999999885
No 350
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=92.89 E-value=0.075 Score=40.11 Aligned_cols=60 Identities=20% Similarity=0.308 Sum_probs=39.6
Q ss_pred eEEEccCCeecCCC-CCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceeeeeeeecc
Q psy3718 82 GILWNMNNKRLDPK-SDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEAS 147 (543)
Q Consensus 82 ~i~W~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~~~~~~v~ 147 (543)
-+.|..+..+.... .+.++.++. ++ -.|.|+.+++.|+|.|.-.+++..|.|....+.+.
T Consensus 45 IltW~n~~~~~~~~~~n~r~~F~~---en---laLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVs 105 (108)
T PF11465_consen 45 ILTWKNDSTPSYNSSFNNRFNFTS---EN---LALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVS 105 (108)
T ss_dssp EEEEETTEEEESSTTHHHHEEEET---TT---TEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEE
T ss_pred EEEEcCCCcccccccccceEeeec---cC---ceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEE
Confidence 35676655544221 234555542 23 37999999999999999999999999876666554
No 351
>PHA02633 hypothetical protein; Provisional
Probab=92.81 E-value=0.12 Score=34.56 Aligned_cols=32 Identities=13% Similarity=-0.136 Sum_probs=22.4
Q ss_pred CceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718 18 RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS 49 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~ 49 (543)
.+.|-|-+ |+|.|.|+.+|..-.. .+..|+|.
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 45788888 9999999999853222 33566663
No 352
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=92.63 E-value=0.2 Score=38.07 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=26.7
Q ss_pred EecceEEEeecCceeecceecCCCCCe-eeEEe
Q psy3718 510 SFNDNFTATYTEDIKLPCLTVGVPAPE-IIWKT 541 (543)
Q Consensus 510 ~~~~~~~~~~~~~~~l~c~~~g~p~p~-~~w~~ 541 (543)
+......+..|+.++|.|.+.+.|.|. |.|..
T Consensus 6 ~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w 38 (98)
T cd05898 6 SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAW 38 (98)
T ss_pred ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEE
Confidence 455778899999999999999999985 47754
No 353
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=92.43 E-value=0.12 Score=39.03 Aligned_cols=18 Identities=6% Similarity=0.061 Sum_probs=16.3
Q ss_pred eEEEec----CCeEEEEEEecC
Q psy3718 20 LLPIGE----SSFHFDPELLNP 37 (543)
Q Consensus 20 ~L~I~~----D~G~Y~C~a~n~ 37 (543)
+|+|.+ |+|.|.|.+...
T Consensus 63 tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 63 RVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred EEEECcCCcccCEEEEEEEEcc
Confidence 699999 999999999874
No 354
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=92.39 E-value=1.1 Score=33.38 Aligned_cols=69 Identities=19% Similarity=0.457 Sum_probs=45.8
Q ss_pred eecceeEeecCCCeEEEEEeecc-----CCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718 56 IKLRNQTSRRGEPSVLQCEAKGE-----KPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC 130 (543)
Q Consensus 56 ~~~~~~~v~~g~~~~l~C~~~g~-----p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 130 (543)
+.|+...+..|++++..|..... ....|.|..|+..++. .+++.- ++..+++++.+.....+-.|-|
T Consensus 8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~---~qy~~i-----n~~~SsVT~~~~~~~~~~L~cC 79 (89)
T PF06328_consen 8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG---SQYRVI-----NDTVSSVTLPNLNPTGATLFCC 79 (89)
T ss_dssp EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC---GCEEEE-----STTEEEEEESS--SSEEEEEEE
T ss_pred EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh---hHccee-----CCeEEEEEEccCCCCCceEEEE
Confidence 34666778899999999998643 4579999999987742 334332 2233778888877777777878
Q ss_pred EE
Q psy3718 131 EI 132 (543)
Q Consensus 131 ~a 132 (543)
..
T Consensus 80 ~l 81 (89)
T PF06328_consen 80 KL 81 (89)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 355
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=92.35 E-value=0.18 Score=38.41 Aligned_cols=31 Identities=10% Similarity=-0.139 Sum_probs=22.5
Q ss_pred CceEEEec----CCeEEEEEEe-cCCCCC-CCceEEE
Q psy3718 18 RVLLPIGE----SSFHFDPELL-NPSFNG-FPPLLLS 48 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~-n~~g~~-~s~~l~v 48 (543)
+.+|.|.| |+|.|.|... .+.|.. ..+.|+|
T Consensus 60 ~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 60 STSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred ccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 45899999 9999999765 444553 3456665
No 356
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=92.25 E-value=0.24 Score=36.46 Aligned_cols=29 Identities=14% Similarity=-0.291 Sum_probs=19.5
Q ss_pred CeEEecCceEEEec----CCeEEEEEEecCCCCC
Q psy3718 12 PRILLGRVLLPIGE----SSFHFDPELLNPSFNG 41 (543)
Q Consensus 12 ~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~ 41 (543)
.++......|.|.+ |+|.|.|.+. +.|..
T Consensus 40 ~r~~~~~~GLlI~~~~~~dsG~Y~C~s~-E~gf~ 72 (85)
T cd05872 40 FSYRVGTDGLLILVTSPEHSGTYRCYSE-EEGFQ 72 (85)
T ss_pred cceEEeCCCCEEEECCHhhCEEEEEEEe-cCCCe
Confidence 34454444566766 9999999987 44544
No 357
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=92.19 E-value=0.071 Score=42.37 Aligned_cols=70 Identities=16% Similarity=0.288 Sum_probs=38.2
Q ss_pred EeecCCCeEEEEEeecc-----CCceEEEccCCeecCCCCCCce----------EEeeeecCCCceeeEEEEeeecCCCc
Q psy3718 62 TSRRGEPSVLQCEAKGE-----KPIGILWNMNNKRLDPKSDNRY----------TIREEILPNGVLSDLSIKRTERGDSA 126 (543)
Q Consensus 62 ~v~~g~~~~l~C~~~g~-----p~~~i~W~~~~~~i~~~~~~~~----------~~~~~~~~~~~~~~L~i~~~~~~D~G 126 (543)
...=++++.|.|.+... +...|.|.+++..+-.-+.... .+ .+. . .+..+|.+...+.- .|
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i-~~l-~-kG~aSL~~~~~~a~-~G 98 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKI-SEL-L-KGNASLKMDKSDAV-EG 98 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BE-GGG-G-GTB--EEEEHHHHH--E
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccch-hHh-h-CCCEEEEEcchhcc-cc
Confidence 34558999999999762 3467999998877632221111 11 111 1 12246888775544 89
Q ss_pred cEEEEEecc
Q psy3718 127 LFTCEIKSQ 135 (543)
Q Consensus 127 ~Y~C~a~n~ 135 (543)
.|+|.+...
T Consensus 99 nYTCeVt~~ 107 (130)
T PF08204_consen 99 NYTCEVTEL 107 (130)
T ss_dssp EEEEEEEET
T ss_pred ceEEEEEec
Confidence 999999875
No 358
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=92.13 E-value=0.27 Score=38.97 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=20.0
Q ss_pred ceEEEec----CCeEEEEEEecCCCCC
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSFNG 41 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g~~ 41 (543)
.+|+|.+ |+|.|.|.+.|..+..
T Consensus 80 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~ 106 (116)
T cd05715 80 ASIVIHNLQFTDNGTYTCDVKNPPDIV 106 (116)
T ss_pred eEEEEeeCCcccCEEEEEEEEeCCCCC
Confidence 4799999 9999999999987654
No 359
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=91.52 E-value=0.19 Score=39.22 Aligned_cols=31 Identities=13% Similarity=-0.051 Sum_probs=22.7
Q ss_pred ceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS 49 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~ 49 (543)
-+|+|.| |+|.|.|......... ....|.|.
T Consensus 72 asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 72 ASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred EEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 3999999 9999999999854322 34566664
No 360
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=91.40 E-value=0.55 Score=35.22 Aligned_cols=21 Identities=5% Similarity=-0.110 Sum_probs=17.5
Q ss_pred CceEEEec----CCeEEEEEEecCC
Q psy3718 18 RVLLPIGE----SSFHFDPELLNPS 38 (543)
Q Consensus 18 ~g~L~I~~----D~G~Y~C~a~n~~ 38 (543)
.+.|.|.+ |+|.|+|...|..
T Consensus 52 ~~~f~i~~v~~~~~G~Y~C~~~~~~ 76 (91)
T cd05751 52 KAKFFIPSMKREHAGRYRCYYRSGV 76 (91)
T ss_pred eEEEEccCCChhHCEEEEEEEECCC
Confidence 34688888 9999999999863
No 361
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=91.29 E-value=1 Score=42.25 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=18.1
Q ss_pred CeEEEEEeec-cCC-ceEEEccC
Q psy3718 68 PSVLQCEAKG-EKP-IGILWNMN 88 (543)
Q Consensus 68 ~~~l~C~~~g-~p~-~~i~W~~~ 88 (543)
.++|.|.|.| .|. +.+.|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999999 454 89999999
No 362
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=91.18 E-value=0.28 Score=34.09 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=19.4
Q ss_pred ccccccccCceeeEEEEeCCCCCCCCCCccccccccccCC
Q psy3718 458 RNMYEELKSQGRGYLVPRGGPPPCPGSDETLYSRHRGESD 497 (543)
Q Consensus 458 ~~~~~~L~p~~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~ 497 (543)
...+++|.||.|+|.|+| .+..|.-.
T Consensus 30 ~~~~~~L~~G~Y~l~V~a--------------~~~~~~~~ 55 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRA--------------KDNNGKWS 55 (66)
T ss_dssp EEEEES--SEEEEEEEEE--------------EETTS-B-
T ss_pred EEEEEeCCCEEEEEEEEE--------------ECCCCCcC
Confidence 778889999999999999 88777553
No 363
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=90.92 E-value=5.8 Score=30.23 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=56.1
Q ss_pred CeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCC----CCEEEE
Q psy3718 252 PTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKT----YTQYSV 327 (543)
Q Consensus 252 P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p----~t~Y~~ 327 (543)
|+++.+.--+...+..+|.+.... ..-..|.+.|+............. ....+....+.+..... ...|.|
T Consensus 2 ~~nlsC~~~~~~~m~CtW~~g~~~---~~~t~y~L~~~~~~~~~~~eC~~y--~~~~~~~~gC~~~~~~~~~~~~~~~~v 76 (99)
T PF09240_consen 2 PQNLSCFIYNLEYMNCTWEPGKEA---PPDTQYTLYYWYSPLEEEKECPHY--SKDSGTRIGCQFPVSEIDSSEFSQYNV 76 (99)
T ss_dssp -EEEEEEEETTTEEEEEEECCTTC---STTEEEEEEEEETTSSSEEEESEE--EESTSSEEEEEEESCTT-TTTTSEEEE
T ss_pred CeeCEEEEECCEEEEEEECCCCCC---CCcccEEEEEEcCCCCccccCCCc--cccCCceeEEEecCCCccccccceEEE
Confidence 668888877889999999987653 345799999998765443332222 22234567777776666 347999
Q ss_pred EEEEEeCCCCC
Q psy3718 328 VVQALNKLGPG 338 (543)
Q Consensus 328 ~V~a~n~~G~s 338 (543)
.|.+.+..|.-
T Consensus 77 ~V~~ss~~~~i 87 (99)
T PF09240_consen 77 CVNGSSSAGSI 87 (99)
T ss_dssp EEEEEETTEEE
T ss_pred EEEeccCCCcc
Confidence 99998877643
No 364
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=90.67 E-value=0.27 Score=37.30 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=28.7
Q ss_pred ecceEEEeecCceeecceecCCCCCe-eeEEec
Q psy3718 511 FNDNFTATYTEDIKLPCLTVGVPAPE-IIWKTF 542 (543)
Q Consensus 511 ~~~~~~~~~~~~~~l~c~~~g~p~p~-~~w~~~ 542 (543)
++..+.|..|+.+.|.|.+..+|.|+ +.|.|.
T Consensus 9 ~~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~ 41 (101)
T cd05860 9 INTTIFVNAGENLDLIVEYEAYPKPEHQQWIYM 41 (101)
T ss_pred CCceEEEECCCCEEEEEEEEeCCCCeeeEEEcC
Confidence 44678999999999999999999998 999874
No 365
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=90.26 E-value=4.7 Score=42.35 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=24.1
Q ss_pred ceeEEEECCCCCCCEEEEEEEEEeCCCCC
Q psy3718 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPG 338 (543)
Q Consensus 310 ~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s 338 (543)
....+.+.++-+ ..|.++|+|+|..|..
T Consensus 658 ~~~~~~~~gi~~-GqY~i~VrAiN~~g~~ 685 (952)
T COG4733 658 SAAGFDVEGIPA-GQYAIRVRAINVFEPN 685 (952)
T ss_pred cccceeecCcCc-cceEEEEEEeeccCCC
Confidence 567889999988 5899999999999854
No 366
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=89.75 E-value=0.37 Score=36.38 Aligned_cols=22 Identities=27% Similarity=0.730 Sum_probs=19.4
Q ss_pred cCceeecceecCC-CCC-eeeEEe
Q psy3718 520 TEDIKLPCLTVGV-PAP-EIIWKT 541 (543)
Q Consensus 520 ~~~~~l~c~~~g~-p~p-~~~w~~ 541 (543)
++.++|.|.+.|. |.+ .|+|.|
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~ 37 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLR 37 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEE
Confidence 6789999999995 775 999987
No 367
>PLN02533 probable purple acid phosphatase
Probab=89.72 E-value=7.6 Score=38.85 Aligned_cols=90 Identities=14% Similarity=0.205 Sum_probs=54.9
Q ss_pred CCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEE--EEee----eccCCceeEEEECCCCC
Q psy3718 248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFE--TVDF----SKEEGKEHHLTLSSLKT 321 (543)
Q Consensus 248 p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~i~~L~p 321 (543)
.+..|+.+++.-.+.+++.|+|...... .+ .|.|....+.-..... .... ...++..+...|++|+|
T Consensus 40 ~~~~P~qvhls~~~~~~m~V~W~T~~~~---~~----~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p 112 (427)
T PLN02533 40 DPTHPDQVHISLVGPDKMRISWITQDSI---PP----SVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKP 112 (427)
T ss_pred CCCCCceEEEEEcCCCeEEEEEECCCCC---CC----EEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCC
Confidence 3457889999887889999999987542 12 2556443221111100 0000 01134567889999999
Q ss_pred CCEEEEEEEEEeCCCCCCCCcceeeeccC
Q psy3718 322 YTQYSVVVQALNKLGPGPMSEEVKQYTAE 350 (543)
Q Consensus 322 ~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~ 350 (543)
++.|.++|-. ...+....|+|.+
T Consensus 113 ~T~Y~Yrvg~------~~~s~~~~F~T~p 135 (427)
T PLN02533 113 NTVYYYKCGG------PSSTQEFSFRTPP 135 (427)
T ss_pred CCEEEEEECC------CCCccceEEECCC
Confidence 9999999831 1235566777753
No 368
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=89.59 E-value=1 Score=34.97 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=15.9
Q ss_pred CCCCCcEEEEeccCeEEEEccCC
Q psy3718 355 QPPQDNTCTTLTSQTIRVSWVSP 377 (543)
Q Consensus 355 ~~P~~~~~~~~~~~~v~l~W~~p 377 (543)
.+|.++++...+ ....|.|+++
T Consensus 23 p~P~nv~~~s~n-f~~iL~W~~~ 44 (107)
T PF01108_consen 23 PAPQNVTVDSVN-FKHILRWDPG 44 (107)
T ss_dssp SSCEEEEEEEET-TEEEEEEEES
T ss_pred CCCCeeEEEEEC-CceEEEeCCC
Confidence 478889887665 4477888864
No 369
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=89.55 E-value=0.3 Score=37.22 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=22.3
Q ss_pred EeecCceeecceecC-CCCCe--eeEEe
Q psy3718 517 ATYTEDIKLPCLTVG-VPAPE--IIWKT 541 (543)
Q Consensus 517 ~~~~~~~~l~c~~~g-~p~p~--~~w~~ 541 (543)
+.+|+.+.|.|.+.| +|.+. |+|+|
T Consensus 13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~r 40 (100)
T cd05755 13 QPVGKNYTLQCDVPGVAPRQNLTVVLLR 40 (100)
T ss_pred ccCCCcEEEEEEEcCcCCCCcEEEEEee
Confidence 479999999999999 59998 69997
No 370
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=89.16 E-value=0.71 Score=31.89 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=27.9
Q ss_pred ccEEEeecCCCeEEecCceEEEec---C-CeEEEEEEecCCCCCCCceEEE
Q psy3718 2 ENFFFYRGFNPRILLGRVLLPIGE---S-SFHFDPELLNPSFNGFPPLLLS 48 (543)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~L~I~~---D-~G~Y~C~a~n~~g~~~s~~l~v 48 (543)
.++.|+++.... .+.+.+|-+.+ | .|.|+|.+++ ...+..|.|
T Consensus 17 tsi~W~kG~~~~-~~~~~tlnLGs~~~DPRG~Y~C~~s~---~~~~~~LQV 63 (69)
T cd07691 17 TNITWKKGKEIL-EVSNTLLDLGSRINDPRGTYSCKESE---PNKEKTLQV 63 (69)
T ss_pred CcEEEecCcccc-cccccEEeccCcccCCCcceEecCcc---CCCcEEEEE
Confidence 368898843333 23367888888 4 7999999987 223344544
No 371
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=88.97 E-value=0.57 Score=41.83 Aligned_cols=36 Identities=8% Similarity=-0.087 Sum_probs=25.9
Q ss_pred ccEEEeecCC-------CeEEecCceEEEec----CCeEEEEEEecC
Q psy3718 2 ENFFFYRGFN-------PRILLGRVLLPIGE----SSFHFDPELLNP 37 (543)
Q Consensus 2 ~~~~~~~~~~-------~~~~~~~g~L~I~~----D~G~Y~C~a~n~ 37 (543)
|+|+|...++ ...+...|.|.+.+ ++|.|+|..+-.
T Consensus 13 P~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 13 PTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence 6788965322 22334578999999 999999987754
No 372
>PHA03052 Hypothetical protein; Provisional
Probab=88.84 E-value=1.9 Score=29.51 Aligned_cols=45 Identities=16% Similarity=0.321 Sum_probs=33.1
Q ss_pred cceeEeecCCCeEEEEEeeccC---CceEEEccCCeecCCCC---CCceEE
Q psy3718 58 LRNQTSRRGEPSVLQCEAKGEK---PIGILWNMNNKRLDPKS---DNRYTI 102 (543)
Q Consensus 58 ~~~~~v~~g~~~~l~C~~~g~p---~~~i~W~~~~~~i~~~~---~~~~~~ 102 (543)
|..+.+..|.+++|.|.+.-.+ .+.|.|.-|+..+.-++ +.|+..
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d~~g~gRI~~ 54 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDDDDGDGRISI 54 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccccCCCcceEe
Confidence 4567889999999999996432 47899999998883333 445543
No 373
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=88.56 E-value=0.53 Score=36.53 Aligned_cols=31 Identities=10% Similarity=0.228 Sum_probs=27.1
Q ss_pred cceEEEeecCceeecceecCCC-CCeeeEEec
Q psy3718 512 NDNFTATYTEDIKLPCLTVGVP-APEIIWKTF 542 (543)
Q Consensus 512 ~~~~~~~~~~~~~l~c~~~g~p-~p~~~w~~~ 542 (543)
+..+.+..|++++|.|.+.+.+ ...+.|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq 38 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSNYLAWYQQ 38 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence 5568899999999999999887 788999974
No 374
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=88.52 E-value=0.41 Score=37.30 Aligned_cols=21 Identities=19% Similarity=-0.021 Sum_probs=18.1
Q ss_pred ceEEEec----CCeEEEEEEecCCC
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSF 39 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g 39 (543)
-+|.|.+ |+|.|.|.+.+..+
T Consensus 70 ~~L~I~~~~~~DsG~Y~C~~~~~~~ 94 (109)
T cd04983 70 SSLHISAAQLSDSAVYFCALSESGG 94 (109)
T ss_pred EEEEECCCCHHHCEEEEEEEecCCC
Confidence 3899999 99999999998653
No 375
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=88.37 E-value=0.4 Score=37.01 Aligned_cols=20 Identities=15% Similarity=-0.042 Sum_probs=18.2
Q ss_pred eEEEec----CCeEEEEEEecCCC
Q psy3718 20 LLPIGE----SSFHFDPELLNPSF 39 (543)
Q Consensus 20 ~L~I~~----D~G~Y~C~a~n~~g 39 (543)
+|+|.+ |+|.|.|.+.+..+
T Consensus 68 sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 68 TLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred EEEECCCCHHHCEEEEEEEecCCC
Confidence 899999 99999999998765
No 376
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=88.03 E-value=17 Score=34.02 Aligned_cols=116 Identities=17% Similarity=0.110 Sum_probs=62.8
Q ss_pred eEEEEEEEEEcCCCCCCCCccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCc
Q psy3718 218 KTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPF 297 (543)
Q Consensus 218 ~~y~~~v~a~n~~G~~~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~ 297 (543)
..|.+.+.+.+..+.-..+....-.+....|+ .-.++++.....+.+.|+|..+... ..|.| |+........
T Consensus 135 ~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~-ei~~~~~~~d~~~~i~ls~dg~~~~------~yy~I-Y~~~~g~e~~ 206 (343)
T COG3401 135 EKYMELIIAADFQMGKSFSFTGVEATPKAEPK-EITNVRVSFDLGNNIELSEDGSEAE------DYYRI-YASDSGNEEY 206 (343)
T ss_pred cceeeeEEeecccccceeeeeeeecccccCCc-eeeeeeeecCCCCcceeeccCcccc------ceEEE-eccCCccccc
Confidence 78889998887665543331111112222332 3334455566788999999987643 26666 4444333322
Q ss_pred eEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCC-CCCCCcceeee
Q psy3718 298 LFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG-PGPMSEEVKQY 347 (543)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G-~s~~s~~~~~~ 347 (543)
..... ...+.+...--..+..|.+.|.++...| .+..+....+.
T Consensus 207 ~~ia~------t~~n~y~d~~eglga~~~y~VTtVd~~~~es~lp~~~t~~ 251 (343)
T COG3401 207 GFIAQ------TTENSYYDVKEGLGAVEYYKVTTVDNTGFESDLPNEPTVG 251 (343)
T ss_pred cceee------ccccchhhhhhccCceeEEEEEEEcCCcceeccCCccccc
Confidence 22211 1223333333334778888888887555 55555544433
No 377
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=87.78 E-value=0.57 Score=34.88 Aligned_cols=22 Identities=36% Similarity=0.863 Sum_probs=17.9
Q ss_pred cCceeecc-eecCCCCCeeeEEe
Q psy3718 520 TEDIKLPC-LTVGVPAPEIIWKT 541 (543)
Q Consensus 520 ~~~~~l~c-~~~g~p~p~~~w~~ 541 (543)
++.+.|.| ..-|+|+|+|+|+.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~ 36 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYL 36 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEE
Confidence 78999999 55567999999985
No 378
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=86.88 E-value=0.48 Score=35.77 Aligned_cols=24 Identities=25% Similarity=0.649 Sum_probs=21.0
Q ss_pred eecCceeecceecCC-C-CCeeeEEe
Q psy3718 518 TYTEDIKLPCLTVGV-P-APEIIWKT 541 (543)
Q Consensus 518 ~~~~~~~l~c~~~g~-p-~p~~~w~~ 541 (543)
..|..++|.|.+.|. | .+.|+|.|
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~ 36 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLK 36 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEE
Confidence 368899999999998 7 47899997
No 379
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=85.81 E-value=1.7 Score=36.88 Aligned_cols=37 Identities=11% Similarity=-0.165 Sum_probs=26.5
Q ss_pred cCceEEEec----CCeEEEEEEe-cCCC-CC-CCceEEEeCCCe
Q psy3718 17 GRVLLPIGE----SSFHFDPELL-NPSF-NG-FPPLLLSSAPPE 53 (543)
Q Consensus 17 ~~g~L~I~~----D~G~Y~C~a~-n~~g-~~-~s~~l~v~~~p~ 53 (543)
.+.+|+|.+ |+|.|.|... =+.| .. ..+.|.|...-.
T Consensus 83 ~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~~~ 126 (189)
T PHA02987 83 NESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTDSY 126 (189)
T ss_pred CcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEchhh
Confidence 567999999 9999999544 4445 33 557888866543
No 380
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=85.02 E-value=12 Score=27.73 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=32.3
Q ss_pred CeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718 68 PSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS 138 (543)
Q Consensus 68 ~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s 138 (543)
...|.+.+.+. ...+.|+-||..+..... .. .+.+ .+...|.|+-.+....|.
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~-~~-------------~~~~---~~~~~G~h~l~vvD~~G~ 83 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQP-GH-------------QLFW---QPDRPGEHTLTVVDAQGR 83 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCC-CC-------------eEEe---CCCCCeeEEEEEEcCCCC
Confidence 56677777666 459999999999832111 11 1222 234567777777666554
No 381
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=84.86 E-value=1.6 Score=29.83 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=18.2
Q ss_pred cCceEEEec----CCeEEEEEEecCC
Q psy3718 17 GRVLLPIGE----SSFHFDPELLNPS 38 (543)
Q Consensus 17 ~~g~L~I~~----D~G~Y~C~a~n~~ 38 (543)
....|.|.+ |+|.|.|.+.+..
T Consensus 41 ~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 41 GSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred eEEEEEECccCcccCcEEEEEEecCc
Confidence 345888888 9999999999865
No 382
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=84.43 E-value=1.2 Score=33.92 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=16.0
Q ss_pred eEEEec----CCeEEEEEEecC
Q psy3718 20 LLPIGE----SSFHFDPELLNP 37 (543)
Q Consensus 20 ~L~I~~----D~G~Y~C~a~n~ 37 (543)
+|.|.+ |+|.|.|.+.+.
T Consensus 64 ~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 64 SLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred EEEECCCChhhCEEEEEEEccC
Confidence 699999 999999998764
No 383
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=83.18 E-value=1.3 Score=33.69 Aligned_cols=19 Identities=0% Similarity=-0.060 Sum_probs=16.8
Q ss_pred eEEEec----CCeEEEEEEecCC
Q psy3718 20 LLPIGE----SSFHFDPELLNPS 38 (543)
Q Consensus 20 ~L~I~~----D~G~Y~C~a~n~~ 38 (543)
+|.|.+ |+|.|.|.+.+..
T Consensus 65 ~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 65 TVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred EEEEcCCCHHHCEEEEEEcccCC
Confidence 799999 9999999988754
No 384
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=82.17 E-value=1.3 Score=34.55 Aligned_cols=20 Identities=15% Similarity=-0.129 Sum_probs=17.4
Q ss_pred ceEEEec----CCeEEEEEEecCC
Q psy3718 19 VLLPIGE----SSFHFDPELLNPS 38 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~ 38 (543)
.+|.|.+ |+|.|.|.+.+..
T Consensus 72 ~~L~I~~~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 72 SSLTIKSAEPEDSAVYLCASSLGG 95 (110)
T ss_pred cEEEECCCChhhCEEEEEEeeCCC
Confidence 3799999 9999999998754
No 385
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=81.82 E-value=5.9 Score=27.27 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=19.5
Q ss_pred EEEECCCCCCCEEEEEEEEEeCCCCC
Q psy3718 313 HLTLSSLKTYTQYSVVVQALNKLGPG 338 (543)
Q Consensus 313 ~~~i~~L~p~t~Y~~~V~a~n~~G~s 338 (543)
.+.+.+|.|| .|+|.|+|.+..|..
T Consensus 30 ~~~~~~L~~G-~Y~l~V~a~~~~~~~ 54 (66)
T PF07495_consen 30 SISYTNLPPG-KYTLEVRAKDNNGKW 54 (66)
T ss_dssp EEEEES--SE-EEEEEEEEEETTS-B
T ss_pred EEEEEeCCCE-EEEEEEEEECCCCCc
Confidence 8889999888 799999999988743
No 386
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=80.62 E-value=2.1 Score=34.04 Aligned_cols=19 Identities=16% Similarity=-0.061 Sum_probs=16.6
Q ss_pred ceEEEec----CCeEEEEEEecC
Q psy3718 19 VLLPIGE----SSFHFDPELLNP 37 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~ 37 (543)
.+|.|.+ |+|.|.|.....
T Consensus 80 ~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 80 CSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEEEEccCChhhCeEEEEEEEcC
Confidence 3799999 999999988774
No 387
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=80.55 E-value=2.7 Score=28.83 Aligned_cols=35 Identities=9% Similarity=-0.170 Sum_probs=20.0
Q ss_pred ccEEEeecCCCeEEecCceEEEec---CCeEEEEEEecC
Q psy3718 2 ENFFFYRGFNPRILLGRVLLPIGE---SSFHFDPELLNP 37 (543)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~L~I~~---D~G~Y~C~a~n~ 37 (543)
++++|++.++...- .+..|.+.+ ++|.|+|.+.+.
T Consensus 19 ~~i~W~~n~~~~~g-~~~~~~~~~~~e~~G~Y~C~~~~~ 56 (65)
T cd07692 19 DDIKWKKNDQVSQG-SDEKYLSLNHFSSSGYYHCTADNA 56 (65)
T ss_pred CCceEEeCCccCCC-CCceEEeeccCCCCceEEEEeCCC
Confidence 34678765421111 223444444 799999999753
No 388
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=80.31 E-value=8 Score=36.88 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=53.6
Q ss_pred ceeEeecCCCeEEEEEeec---cCCceEEEccCCeecCCC---------------CCCceEEeee-ec-CCCceeeEEEE
Q psy3718 59 RNQTSRRGEPSVLQCEAKG---EKPIGILWNMNNKRLDPK---------------SDNRYTIREE-IL-PNGVLSDLSIK 118 (543)
Q Consensus 59 ~~~~v~~g~~~~l~C~~~g---~p~~~i~W~~~~~~i~~~---------------~~~~~~~~~~-~~-~~~~~~~L~i~ 118 (543)
....+.+|..+.|.|..+. .....+.|+.-|.++.+. .+..+.+... .. .+-..++|+|+
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 3466778999999999875 334678898777665422 1233333321 01 12346799999
Q ss_pred eeecCCCccEEEEEecc
Q psy3718 119 RTERGDSALFTCEIKSQ 135 (543)
Q Consensus 119 ~~~~~D~G~Y~C~a~n~ 135 (543)
++.-+.+|=|.|.|...
T Consensus 352 ka~I~N~GCY~~~a~~g 368 (500)
T PHA02914 352 KAHINNAGCYEAQAFMG 368 (500)
T ss_pred eEEEEcCCceEEEEecC
Confidence 99999999999999885
No 389
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=80.24 E-value=3.7 Score=29.97 Aligned_cols=16 Identities=6% Similarity=0.063 Sum_probs=12.7
Q ss_pred CCeEEEEEEecCCCCC
Q psy3718 26 SSFHFDPELLNPSFNG 41 (543)
Q Consensus 26 D~G~Y~C~a~n~~g~~ 41 (543)
|.+.|+|.|.|.....
T Consensus 56 ~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 56 DGAPIICRVDHPALKS 71 (82)
T ss_pred CCCEEEEEEeChhcCC
Confidence 4569999999987653
No 390
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=79.70 E-value=2.3 Score=32.89 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=26.2
Q ss_pred eEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEe
Q psy3718 428 KGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPR 475 (543)
Q Consensus 428 ~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A 475 (543)
..|.|.|+..+.. ....... .......+.+|.|+ .|-|+|+|
T Consensus 44 ~~Y~v~~~~~~~~-~~~~~~~-----~~~~~~~l~~L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 44 LSYNVSYWKNGSN-EKKKEIE-----TKNSSVTLSDLKPGTNYCVSVQA 86 (106)
T ss_dssp -EEEEEEEETTTS-CEEEEEE-----SSSEEEEEES--TTSEEEEEEEE
T ss_pred eEEEEEEEeCCCc-cceEEEe-----ecCCEEEEeCCCCCCCEEEEEEE
Confidence 4699998887763 1122221 33444467799999 99999999
No 391
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=79.10 E-value=1.9 Score=32.52 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=22.2
Q ss_pred EEEeecCceeecceec-CCCCCeeeEEe
Q psy3718 515 FTATYTEDIKLPCLTV-GVPAPEIIWKT 541 (543)
Q Consensus 515 ~~~~~~~~~~l~c~~~-g~p~p~~~w~~ 541 (543)
+.....+.+.+.|.+. |+|++.|+|++
T Consensus 10 ~~~~~~~~~va~C~s~~gkPaa~IsW~~ 37 (95)
T cd07703 10 VSAGTIPVPVAKCVSANGRPPARISWSS 37 (95)
T ss_pred eecCCCccEEEEEEcCCCCCCcEEEEEc
Confidence 4556667889999777 88999999986
No 392
>smart00406 IGv Immunoglobulin V-Type.
Probab=78.63 E-value=1.2 Score=32.12 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=13.4
Q ss_pred ceEEEec----CCeEEEEE
Q psy3718 19 VLLPIGE----SSFHFDPE 33 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~ 33 (543)
-+|.|.+ |+|.|.|.
T Consensus 62 ~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 62 VSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred EEEEEcCCCHHHCEEEEEc
Confidence 3799999 99999996
No 393
>KOG4806|consensus
Probab=78.31 E-value=34 Score=32.19 Aligned_cols=28 Identities=36% Similarity=0.336 Sum_probs=23.8
Q ss_pred CCceeEEEECCCCCCCEEEEEEEEEeCC
Q psy3718 308 EGKEHHLTLSSLKTYTQYSVVVQALNKL 335 (543)
Q Consensus 308 ~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 335 (543)
.++...+++.+|+|.+.|.|.|..+|..
T Consensus 166 ig~~n~~~v~~L~pdt~Y~~dvFvv~~~ 193 (454)
T KOG4806|consen 166 IGNKNIFTVSDLKPDTQYYFDVFVVNIN 193 (454)
T ss_pred cCCccEEEhhhcCCCceEEEEEEEEecC
Confidence 3455689999999999999999998764
No 394
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=77.61 E-value=2.4 Score=32.89 Aligned_cols=18 Identities=17% Similarity=-0.007 Sum_probs=15.5
Q ss_pred eEEEec----CCeEEEEEEecC
Q psy3718 20 LLPIGE----SSFHFDPELLNP 37 (543)
Q Consensus 20 ~L~I~~----D~G~Y~C~a~n~ 37 (543)
.|+|.+ |+|.|.|...+.
T Consensus 73 ~L~I~~~~~~Dsg~YyCa~~~~ 94 (107)
T cd07700 73 RLHINRVKPEDSGTYFCMTVGS 94 (107)
T ss_pred EEEECCCCHHHCEEEEEeEcCC
Confidence 599999 999999998643
No 395
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=76.43 E-value=4.9 Score=31.12 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=28.0
Q ss_pred ecceEEEeecCceeecceec-CCCCCeeeEEe
Q psy3718 511 FNDNFTATYTEDIKLPCLTV-GVPAPEIIWKT 541 (543)
Q Consensus 511 ~~~~~~~~~~~~~~l~c~~~-g~p~p~~~w~~ 541 (543)
-+..+.+..|+++.|.|... ......+.|.|
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~ 38 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYR 38 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSEEEEEE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcceEEEEE
Confidence 36789999999999999999 77888999997
No 396
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=74.84 E-value=2.5 Score=33.29 Aligned_cols=18 Identities=17% Similarity=0.098 Sum_probs=15.9
Q ss_pred ceEEEec----CCeEEEEEEec
Q psy3718 19 VLLPIGE----SSFHFDPELLN 36 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n 36 (543)
.+|+|.+ |+|.|.|.+..
T Consensus 77 ~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 77 STLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred EEEEEEECCHHHCEEEEEEEec
Confidence 3799999 99999999875
No 397
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=74.83 E-value=2.6 Score=31.77 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=19.7
Q ss_pred ecCceeecceecCC-CCC-eeeEEe
Q psy3718 519 YTEDIKLPCLTVGV-PAP-EIIWKT 541 (543)
Q Consensus 519 ~~~~~~l~c~~~g~-p~p-~~~w~~ 541 (543)
.++.++|.|++.|. |.. .++|.|
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~ 37 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFK 37 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEE
Confidence 57889999999995 766 889987
No 398
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=73.45 E-value=2.8 Score=32.23 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=18.7
Q ss_pred ecCceeecceecCC-CCC-eeeEEe
Q psy3718 519 YTEDIKLPCLTVGV-PAP-EIIWKT 541 (543)
Q Consensus 519 ~~~~~~l~c~~~g~-p~p-~~~w~~ 541 (543)
.+..++|.|++.|. |.. .++|.|
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k 39 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQ 39 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEE
Confidence 46789999999995 765 569986
No 399
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=73.16 E-value=2.6 Score=32.50 Aligned_cols=17 Identities=6% Similarity=0.030 Sum_probs=15.2
Q ss_pred eEEEec----CCeEEEEEEec
Q psy3718 20 LLPIGE----SSFHFDPELLN 36 (543)
Q Consensus 20 ~L~I~~----D~G~Y~C~a~n 36 (543)
+|.|.+ |+|.|.|.+.+
T Consensus 70 ~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 70 VLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred EEEECCCCHHHCEEEEEEEcc
Confidence 799999 99999998764
No 400
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=72.81 E-value=3 Score=31.54 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=20.2
Q ss_pred eecCceeeccee-cCCCCCeeeEEe
Q psy3718 518 TYTEDIKLPCLT-VGVPAPEIIWKT 541 (543)
Q Consensus 518 ~~~~~~~l~c~~-~g~p~p~~~w~~ 541 (543)
...+...+.|.+ -|+|+++|+|.+
T Consensus 13 ~~~~~~va~C~s~~gkP~a~ItW~~ 37 (95)
T cd05719 13 GGEPVTVATCVSANGKPPATISWET 37 (95)
T ss_pred CCCccEEEEEECCCCcCCCEEEEEe
Confidence 455677889999 588999999987
No 401
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=71.52 E-value=3.2 Score=32.73 Aligned_cols=18 Identities=22% Similarity=0.095 Sum_probs=16.0
Q ss_pred eEEEec----CCeEEEEEEecC
Q psy3718 20 LLPIGE----SSFHFDPELLNP 37 (543)
Q Consensus 20 ~L~I~~----D~G~Y~C~a~n~ 37 (543)
+|.|.+ |+|.|.|.+.+.
T Consensus 73 sL~I~~~~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 73 SLTISALQLEDSAKYFCALSTL 94 (116)
T ss_pred EEEECCCCHHHCEEEEEEEECC
Confidence 799999 999999998853
No 402
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=71.30 E-value=4.7 Score=30.51 Aligned_cols=30 Identities=23% Similarity=0.522 Sum_probs=23.7
Q ss_pred cceEEEeecCceee-ccee-cCCCCCeeeEEe
Q psy3718 512 NDNFTATYTEDIKL-PCLT-VGVPAPEIIWKT 541 (543)
Q Consensus 512 ~~~~~~~~~~~~~l-~c~~-~g~p~p~~~w~~ 541 (543)
+..+.+..|..+.| .|.+ .|+|+++|+|++
T Consensus 8 ~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~ 39 (97)
T cd07704 8 GPSLLIDGGNGTTLAACCAAEGRPAADVTWET 39 (97)
T ss_pred CCeeEeecCcceeEEEEEccCCccCCEeEEeC
Confidence 34567788899998 7765 567999999986
No 403
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=70.73 E-value=4 Score=31.90 Aligned_cols=25 Identities=20% Similarity=0.522 Sum_probs=20.8
Q ss_pred EeecCceeecceecCC-CC-CeeeEEe
Q psy3718 517 ATYTEDIKLPCLTVGV-PA-PEIIWKT 541 (543)
Q Consensus 517 ~~~~~~~~l~c~~~g~-p~-p~~~w~~ 541 (543)
+..|+.++|.|.+.|. |. -.|+|+|
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~k 44 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLK 44 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEE
Confidence 3467889999999996 75 6999987
No 404
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=69.67 E-value=3.6 Score=30.05 Aligned_cols=22 Identities=27% Similarity=0.730 Sum_probs=19.0
Q ss_pred cCceeecceecCC-CCC-eeeEEe
Q psy3718 520 TEDIKLPCLTVGV-PAP-EIIWKT 541 (543)
Q Consensus 520 ~~~~~l~c~~~g~-p~p-~~~w~~ 541 (543)
+..++|.|.+.|. |.. .|+|.+
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~ 31 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLK 31 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEE
T ss_pred CCCEEEEEEEEEEECCCcEEEEEe
Confidence 7889999999996 766 799976
No 405
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=69.52 E-value=15 Score=26.09 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=33.1
Q ss_pred CCCCccccc--cccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccccccCceEEEecceEEEeecCceeec
Q psy3718 454 DPRGRNMYE--ELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRVPARIASFNDNFTATYTEDIKLP 526 (543)
Q Consensus 454 ~~~~~~~~~--~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~ 526 (543)
..+...+|. +|++| .|.++|.| .+...| ++.+-...|.+..|+.+.|.
T Consensus 24 ~~G~~R~F~T~~L~~G~~y~Y~v~a-------------~~~~dG------------~~~t~~~~V~vrAGd~~~v~ 74 (75)
T TIGR03000 24 GTGTVRTFTTPPLEAGKEYEYTVTA-------------EYDRDG------------RILTRTRTVVVRAGDTVTVD 74 (75)
T ss_pred cCccEEEEECCCCCCCCEEEEEEEE-------------EEecCC------------cEEEEEEEEEEcCCceEEee
Confidence 455556665 99999 99999999 112222 24555677888888888763
No 406
>KOG3632|consensus
Probab=68.94 E-value=4.4 Score=43.27 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=70.5
Q ss_pred CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCC-CCCEEEEEE
Q psy3718 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLK-TYTQYSVVV 329 (543)
Q Consensus 251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~-p~t~Y~~~V 329 (543)
-|+.+.+......++.|.|++|.....-.+...|-+.....-. ..+. .+..+...+..|. ....|.+.|
T Consensus 580 ypr~~~~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~elr------q~l~----~gs~tka~~E~ld~~a~s~~isv 649 (1335)
T KOG3632|consen 580 YPRTGAAVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLMELR------QTLY----AGSLTKAMQESLDNSAHSGYISV 649 (1335)
T ss_pred cccchhhhhhhccceeeeccCCCCCCccccceeeeeecchhhh------hhcc----cccchHHHHhhccccCCceeeeh
Confidence 3555556666788999999998765445566666654321110 0110 1222333334333 334588899
Q ss_pred EEEeCCCCCCCCcceeeeccCCCCCCCCCCcEEEEeccCeEEEEccCC
Q psy3718 330 QALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSP 377 (543)
Q Consensus 330 ~a~n~~G~s~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p 377 (543)
++....|.++....+.. +...++. .|.++++..++.++..++|-+-
T Consensus 650 q~ltSrGsqd~lrc~Ll-vgg~a~v-vpsqlrv~n~tqtSa~itwvp~ 695 (1335)
T KOG3632|consen 650 QRLTSRGSQDQLRCILL-VGGAAPV-VPSQLRVWNATQTSAMITWVPF 695 (1335)
T ss_pred hhhhccCCCCcceeeEe-ccccccc-cchhhhhhhhhchhhheeeeec
Confidence 99998887765544333 3334444 7889999888888889999853
No 407
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=67.94 E-value=4.2 Score=31.11 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=19.4
Q ss_pred ecCceeecceecCC-C-CCeeeEEe
Q psy3718 519 YTEDIKLPCLTVGV-P-APEIIWKT 541 (543)
Q Consensus 519 ~~~~~~l~c~~~g~-p-~p~~~w~~ 541 (543)
.+..++|.|++.|. | .-+|+|.|
T Consensus 16 ~~~~~~L~C~~~gfyP~~i~v~W~~ 40 (100)
T cd07699 16 KSGKATLVCLINDFYPGFATVQWKV 40 (100)
T ss_pred cCCCcEEEEEEEeEECCCCEEEEEE
Confidence 45679999999995 7 78899986
No 408
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=67.59 E-value=5.5 Score=31.49 Aligned_cols=17 Identities=6% Similarity=-0.105 Sum_probs=15.4
Q ss_pred eEEEec----CCeEEEEEEec
Q psy3718 20 LLPIGE----SSFHFDPELLN 36 (543)
Q Consensus 20 ~L~I~~----D~G~Y~C~a~n 36 (543)
.|.|.+ |+|.|.|.+..
T Consensus 77 ~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 77 YLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred EEEECCCCHHHCEEEEEEEEc
Confidence 699999 99999998875
No 409
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=67.34 E-value=22 Score=25.83 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=30.5
Q ss_pred eEEEEEeeccC-------CceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEe
Q psy3718 69 SVLQCEAKGEK-------PIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK 133 (543)
Q Consensus 69 ~~l~C~~~g~p-------~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 133 (543)
-.|.|..-+.. .+.+.|...+..+. ... ..+.......+|+|..+|.|+
T Consensus 8 ~~l~~e~L~~tl~~~~~~~~~~~l~~~~~k~~---------~~~-------~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 8 NVLPCEVLELTLEKPPGMKPSLFLENPGKKSL---------ETK-------KLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp CEEEEEEESECEEETTTECEEEEEECSSCEEE---------EES-------SEEEEESBTCGGSEEEEEEEE
T ss_pred CEeeeeeEEEEEcCCCCCChhheeeccCcccc---------ccc-------eEEEEecCCCCCCEEEEEEEc
Confidence 46677765544 47888875544331 100 134555667799999999994
No 410
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=66.87 E-value=7.7 Score=29.60 Aligned_cols=32 Identities=19% Similarity=-0.030 Sum_probs=25.1
Q ss_pred cCceEEEec----CCeEEEEEEecCCCCCCCceEEE
Q psy3718 17 GRVLLPIGE----SSFHFDPELLNPSFNGFPPLLLS 48 (543)
Q Consensus 17 ~~g~L~I~~----D~G~Y~C~a~n~~g~~~s~~l~v 48 (543)
.|.+|.|.. |+|.|.-.+++..|...+..+.|
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqV 104 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQV 104 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEE
Confidence 356999998 99999999999999876654444
No 411
>PHA03112 IL-18 binding protein; Provisional
Probab=65.70 E-value=28 Score=28.24 Aligned_cols=76 Identities=18% Similarity=0.224 Sum_probs=46.6
Q ss_pred ecCCCeEEEEEeecc-CC-ceEEEccCC-eecC-CCCCCce------EEeeeecCCCceeeEEEEeeecC-CCccEEEEE
Q psy3718 64 RRGEPSVLQCEAKGE-KP-IGILWNMNN-KRLD-PKSDNRY------TIREEILPNGVLSDLSIKRTERG-DSALFTCEI 132 (543)
Q Consensus 64 ~~g~~~~l~C~~~g~-p~-~~i~W~~~~-~~i~-~~~~~~~------~~~~~~~~~~~~~~L~i~~~~~~-D~G~Y~C~a 132 (543)
+.++++.|+|.+-+. |. .-+.|...+ +.+. .....++ ........++....|.+.+++++ +....+|+.
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 569999999999865 54 788999654 2211 1111111 11111223456678888998855 555999998
Q ss_pred eccccee
Q psy3718 133 KSQKISS 139 (543)
Q Consensus 133 ~n~~~sv 139 (543)
....+.+
T Consensus 116 ~D~~~~~ 122 (141)
T PHA03112 116 MDLDGPI 122 (141)
T ss_pred ecCCchh
Confidence 8865543
No 412
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=64.69 E-value=5.2 Score=31.48 Aligned_cols=24 Identities=29% Similarity=0.674 Sum_probs=19.9
Q ss_pred eecCceeecceecCC-CCC-eeeEEe
Q psy3718 518 TYTEDIKLPCLTVGV-PAP-EIIWKT 541 (543)
Q Consensus 518 ~~~~~~~l~c~~~g~-p~p-~~~w~~ 541 (543)
..+..++|.|++.|. |.. .|+|+|
T Consensus 16 ~~~~~~tL~Cla~gFyP~~I~V~W~k 41 (115)
T cd05769 16 RNKRKATLVCLATGFYPDHVSLSWKV 41 (115)
T ss_pred ccCCCcEEEEEEEeEeCCCcEEEEEE
Confidence 356789999999996 874 899986
No 413
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=64.64 E-value=6.5 Score=29.78 Aligned_cols=23 Identities=26% Similarity=0.696 Sum_probs=18.8
Q ss_pred ecCceeecceecCC---CCCeeeEEe
Q psy3718 519 YTEDIKLPCLTVGV---PAPEIIWKT 541 (543)
Q Consensus 519 ~~~~~~l~c~~~g~---p~p~~~w~~ 541 (543)
.++.++|.|++.|. |.-.|+|.|
T Consensus 13 ~~~~~tLtC~v~gf~yP~~i~v~W~r 38 (96)
T cd07696 13 LTKSVKLTCLVTNLTSPEGVNVTWTR 38 (96)
T ss_pred cCCCeEEEEEEeCCCCCCCcEEEEEE
Confidence 47889999999999 444569987
No 414
>KOG1948|consensus
Probab=62.79 E-value=76 Score=34.12 Aligned_cols=22 Identities=18% Similarity=0.092 Sum_probs=18.4
Q ss_pred CCCCccccccccCc-eeeEEEEe
Q psy3718 454 DPRGRNMYEELKSQ-GRGYLVPR 475 (543)
Q Consensus 454 ~~~~~~~~~~L~p~-~Y~~~v~A 475 (543)
.....+.++||.|+ .|++++.+
T Consensus 943 denG~yRiRGL~Pdc~Y~V~vk~ 965 (1165)
T KOG1948|consen 943 DENGTYRIRGLLPDCEYQVHVKS 965 (1165)
T ss_pred ccCCcEEEeccCCCceEEEEEee
Confidence 34455788899999 99999999
No 415
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=62.53 E-value=25 Score=25.68 Aligned_cols=29 Identities=10% Similarity=-0.047 Sum_probs=18.2
Q ss_pred eEEEec----CCeEEEEEEecCCCCC--CCceEEE
Q psy3718 20 LLPIGE----SSFHFDPELLNPSFNG--FPPLLLS 48 (543)
Q Consensus 20 ~L~I~~----D~G~Y~C~a~n~~g~~--~s~~l~v 48 (543)
+|.|.- |...|+|.|.|+.-.. .+..|.|
T Consensus 45 ~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 45 QLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred EEEEECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence 555544 5569999999976432 2334554
No 416
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=60.52 E-value=7.3 Score=29.46 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.8
Q ss_pred eecCceeecceecCC-CC--CeeeEEe
Q psy3718 518 TYTEDIKLPCLTVGV-PA--PEIIWKT 541 (543)
Q Consensus 518 ~~~~~~~l~c~~~g~-p~--p~~~w~~ 541 (543)
..|.++++.|.+-|. |. ++|.|.|
T Consensus 13 ~~G~~vtv~C~v~~v~P~~~l~v~Llk 39 (99)
T cd07689 13 EEGKPVTVKCEVPDVYPFDRLEIELLK 39 (99)
T ss_pred cCCceEEEEEEecCcccCCceEEEEec
Confidence 689999999999966 77 8899975
No 417
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=58.96 E-value=12 Score=28.12 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=18.1
Q ss_pred ecCceeecceecCC-C-CCeeeEEe
Q psy3718 519 YTEDIKLPCLTVGV-P-APEIIWKT 541 (543)
Q Consensus 519 ~~~~~~l~c~~~g~-p-~p~~~w~~ 541 (543)
.++.++|.|++.|. | .-.|+|.|
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~ 38 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLK 38 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEE
Confidence 35568999999995 6 46779986
No 418
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=58.36 E-value=8.3 Score=28.97 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=18.4
Q ss_pred ecCceeecceecCC-C-CCeeeEEe
Q psy3718 519 YTEDIKLPCLTVGV-P-APEIIWKT 541 (543)
Q Consensus 519 ~~~~~~l~c~~~g~-p-~p~~~w~~ 541 (543)
.|...+|.|++.|. | .-.|+|.|
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~ 38 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLK 38 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEE
Confidence 45667999999996 4 66789987
No 419
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=58.20 E-value=11 Score=25.84 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=17.6
Q ss_pred EeecCceeecceecCCCCCeeeEEec
Q psy3718 517 ATYTEDIKLPCLTVGVPAPEIIWKTF 542 (543)
Q Consensus 517 ~~~~~~~~l~c~~~g~p~p~~~w~~~ 542 (543)
|.+|++++|. |.|...++|+||
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~~ 23 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYKF 23 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEEe
Confidence 6788888884 667778999976
No 420
>KOG4806|consensus
Probab=57.74 E-value=1.8e+02 Score=27.76 Aligned_cols=124 Identities=14% Similarity=0.160 Sum_probs=66.5
Q ss_pred eEEEEEEEEEcCCCCCCCCccEEEec---cCCCCCCCCeeeEEEec--CCCeEEEEeeCCCCCCCCcceeEEEEEEEEcC
Q psy3718 218 KTYHIRIVAENEIGSSEPSDTVTILT---AEEAPSGPPTHIKVEAT--DQNTLKVSWSPPERDHWNGVIQGYYVGYKETS 292 (543)
Q Consensus 218 ~~y~~~v~a~n~~G~~~~s~~~~~~t---~~~~p~~~P~~~~~~~~--~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~ 292 (543)
..|.++....|..-.- ....+...+ ..+.| .-|.+-.+..+ .-++..|.|....+. -..|.|+.+...
T Consensus 295 ~~~~~rf~~~ndde~~-~~v~V~aSt~~t~~~~P-~LP~dTtVk~v~r~CSsAtIaW~gs~d~-----~~kyCIy~~~~~ 367 (454)
T KOG4806|consen 295 ERYLMRFEPSNDDEAL-QKVMVAASTEATFRDLP-ELPQDTTVKNVRRRCSSATIAWNGSPDE-----ELKYCIYVFNLP 367 (454)
T ss_pred CceEEEEEecCCchhh-heeEeeeecccccCcCC-CCCCCceEeeeccccchheeeeccCcch-----heeEEEEEeccc
Confidence 6677777777654221 111111111 12233 46777777766 446899999987542 346666554432
Q ss_pred CCCC-----------------ceEEEEee------eccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcceeeec
Q psy3718 293 TDKP-----------------FLFETVDF------SKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348 (543)
Q Consensus 293 ~~~~-----------------~~~~~~~~------~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t 348 (543)
..+. ..+..... .....+...-+|.+|.|+..|.+.|.|.-..|..-+-..+.+.|
T Consensus 368 ~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lpyqa~~v~t 446 (454)
T KOG4806|consen 368 QRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLPYQALTVHT 446 (454)
T ss_pred chhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCccccceeEEEEe
Confidence 2110 00000101 11122334557899999999999999976665544333343433
No 421
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=56.91 E-value=11 Score=27.75 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=20.1
Q ss_pred EEeecCceeecceecCC--CCCeeeEE
Q psy3718 516 TATYTEDIKLPCLTVGV--PAPEIIWK 540 (543)
Q Consensus 516 ~~~~~~~~~l~c~~~g~--p~p~~~w~ 540 (543)
.+..|+.++|.|+.-.. |.|+|.|+
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~ 36 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWR 36 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEe
Confidence 45689999999999654 45599996
No 422
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=56.70 E-value=9.7 Score=28.67 Aligned_cols=22 Identities=41% Similarity=0.807 Sum_probs=17.9
Q ss_pred cCceeecceecCC-CC-CeeeEEe
Q psy3718 520 TEDIKLPCLTVGV-PA-PEIIWKT 541 (543)
Q Consensus 520 ~~~~~l~c~~~g~-p~-p~~~w~~ 541 (543)
...++|.|++.|. |. -.|+|.|
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~ 37 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLV 37 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEE
Confidence 4568999999995 76 7789986
No 423
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=55.89 E-value=9.7 Score=28.74 Aligned_cols=22 Identities=27% Similarity=0.848 Sum_probs=17.6
Q ss_pred cCceeecceecCC-C-CCeeeEEe
Q psy3718 520 TEDIKLPCLTVGV-P-APEIIWKT 541 (543)
Q Consensus 520 ~~~~~l~c~~~g~-p-~p~~~w~~ 541 (543)
.+.++|.|++.|. | .-.|+|.|
T Consensus 16 ~~~~~L~C~a~gFyP~~i~vtW~k 39 (95)
T cd04985 16 SDSVTLGCLATGFLPEPVTFTWNS 39 (95)
T ss_pred CCcEEEEEEEeeEECCCcEEEEeE
Confidence 4568999999996 5 56679987
No 424
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=54.91 E-value=10 Score=28.74 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=17.8
Q ss_pred cCceeecceecCC-C-CCeeeEEe
Q psy3718 520 TEDIKLPCLTVGV-P-APEIIWKT 541 (543)
Q Consensus 520 ~~~~~l~c~~~g~-p-~p~~~w~~ 541 (543)
+..++|.|++.|. | .-.|+|+|
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~k 39 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWRE 39 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEE
Confidence 5678999999995 5 55679987
No 425
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=54.86 E-value=60 Score=24.37 Aligned_cols=60 Identities=23% Similarity=0.427 Sum_probs=35.3
Q ss_pred eEEEEE-eeccCCceEEEccCCeecCCCCCCceEEeeeecCCC---ceeeEEEEeeecCCCccEEEEEecc
Q psy3718 69 SVLQCE-AKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG---VLSDLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 69 ~~l~C~-~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
..-.|. +.|.|++.|.|.-+ + +..+..+.....+| ..+.+.+-.....|.-.-+|++.-.
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~---l----~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTR---L----KGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEcc---C----CCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEec
Confidence 355899 67889999999832 1 11112221111222 1234566666777777889988774
No 426
>PHA03240 envelope glycoprotein M; Provisional
Probab=53.24 E-value=34 Score=29.64 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=15.5
Q ss_pred eeeEEEEeeecCCCccEE
Q psy3718 112 LSDLSIKRTERGDSALFT 129 (543)
Q Consensus 112 ~~~L~i~~~~~~D~G~Y~ 129 (543)
.++|.|.++..+|.|.|.
T Consensus 104 NstL~i~~vn~sd~~nYc 121 (258)
T PHA03240 104 NSTLIIAHLNLSDAGEYC 121 (258)
T ss_pred cceEEEEEEeecCcchhh
Confidence 357999999999999995
No 427
>KOG1225|consensus
Probab=52.79 E-value=86 Score=32.07 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=65.9
Q ss_pred CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEE
Q psy3718 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ 330 (543)
Q Consensus 251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 330 (543)
+|..+.....+...+.+.|... .....|...|............ ..+.....+.+..|.|+..|..+++
T Consensus 368 ~~~~~~~~~cs~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-----r~~~~~~~~~~~~~~~g~~~~~~~~ 436 (525)
T KOG1225|consen 368 DPSLLLITECSPPSLCIAGVGR------RRVTHCAGTYCPLGESGGDLQG-----RVPGDANSVDIQGLEPGDEYNCSVN 436 (525)
T ss_pred CchhhcccccCCCceeeccccc------cccccccccccccccCCCccce-----eeccceeeeeeeeecCCcceeeehh
Confidence 3444555556777888888822 2334455555443322211111 2256778999999999999999998
Q ss_pred EEeCC-CCCCCCcceeeeccCCCCCCCCCCcEEEEeccCeEEEEccCC
Q psy3718 331 ALNKL-GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSP 377 (543)
Q Consensus 331 a~n~~-G~s~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p 377 (543)
++-.. |..+... ..++... .+..+.+.....+++.+.|..|
T Consensus 437 ~v~~~~~~~~~~~--~~~~~~~----~~g~~~v~~~~~~s~e~~g~~~ 478 (525)
T KOG1225|consen 437 TVAANIGSLPKDK--SETTVLC----WNGGLCVDGETESSLEVGGPCP 478 (525)
T ss_pred hhhhhhccCCccc--ccceEee----cCCceeeeeeeeccccccCCCC
Confidence 87443 2222221 1222222 3456777778888999999977
No 428
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=52.55 E-value=9.6 Score=26.71 Aligned_cols=13 Identities=8% Similarity=0.268 Sum_probs=12.5
Q ss_pred cccCc-eeeEEEEe
Q psy3718 463 ELKSQ-GRGYLVPR 475 (543)
Q Consensus 463 ~L~p~-~Y~~~v~A 475 (543)
.|+|| .|.|+|+|
T Consensus 66 ~LEpGgdY~Ftira 79 (80)
T PF11344_consen 66 QLEPGGDYSFTIRA 79 (80)
T ss_pred eccCCCceEEEEec
Confidence 79999 99999998
No 429
>COG5475 Uncharacterized small protein [Function unknown]
Probab=51.07 E-value=50 Score=21.66 Aligned_cols=24 Identities=4% Similarity=-0.101 Sum_probs=18.9
Q ss_pred eEEEec--CCeEEEEEEecCCCCCCC
Q psy3718 20 LLPIGE--SSFHFDPELLNPSFNGFP 43 (543)
Q Consensus 20 ~L~I~~--D~G~Y~C~a~n~~g~~~s 43 (543)
.++|.. ..|.|.|.-.+..|....
T Consensus 19 ~Mtvs~~ss~Gmy~C~Wf~g~g~~~~ 44 (60)
T COG5475 19 RMTVSGYSSDGMYECRWFDGYGVKRE 44 (60)
T ss_pred eEEEeccccCCeEEEEEecCCCcccc
Confidence 677777 449999999999886533
No 430
>PLN02533 probable purple acid phosphatase
Probab=50.34 E-value=1.1e+02 Score=30.79 Aligned_cols=24 Identities=17% Similarity=0.523 Sum_probs=19.1
Q ss_pred CCCCCCcEEEEeccCeEEEEccCC
Q psy3718 354 EQPPQDNTCTTLTSQTIRVSWVSP 377 (543)
Q Consensus 354 ~~~P~~~~~~~~~~~~v~l~W~~p 377 (543)
...|.++++.-.++++|.|+|...
T Consensus 41 ~~~P~qvhls~~~~~~m~V~W~T~ 64 (427)
T PLN02533 41 PTHPDQVHISLVGPDKMRISWITQ 64 (427)
T ss_pred CCCCceEEEEEcCCCeEEEEEECC
Confidence 346788888777888999999865
No 431
>PHA03042 CD47-like protein; Provisional
Probab=48.88 E-value=26 Score=31.88 Aligned_cols=32 Identities=19% Similarity=-0.032 Sum_probs=22.8
Q ss_pred ecCCCeEEecCce----EEEec---CCeEEEEEEecCCC
Q psy3718 8 RGFNPRILLGRVL----LPIGE---SSFHFDPELLNPSF 39 (543)
Q Consensus 8 ~~~~~~~~~~~g~----L~I~~---D~G~Y~C~a~n~~g 39 (543)
+-+++.....||+ |.... =.|.|+|.|.+..-
T Consensus 56 kf~~~~If~~n~tn~aSL~~~f~~~l~GNYTCEv~~l~n 94 (286)
T PHA03042 56 KFNNKVIFKKNNTNTSSLKFNFSKNLSGNYTCEAINKFN 94 (286)
T ss_pred EeCCeeEEEecCCcceEEEEeccccCCCceeEEEeeccc
Confidence 4445555566776 88877 57999999998543
No 432
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=46.13 E-value=1.2e+02 Score=22.36 Aligned_cols=64 Identities=9% Similarity=0.136 Sum_probs=38.1
Q ss_pred CeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccC-CceeEEEE-CCCCCCCEEEEEEEE
Q psy3718 263 NTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEE-GKEHHLTL-SSLKTYTQYSVVVQA 331 (543)
Q Consensus 263 ~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i-~~L~p~t~Y~~~V~a 331 (543)
..+.|.|..... ....|.|...............+.-.... .....+.+ .+|.++..|.|++..
T Consensus 13 ~~~~I~W~~~~~-----~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~l~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 13 QPITITWTSDGT-----DPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSDLPSGGDYFIQIVN 78 (93)
T ss_pred CcEEEEEeCCCC-----CCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCCCCCCCcEEEEEEE
Confidence 679999998742 23677777766555222222222111111 24566666 569999999998873
No 433
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=45.52 E-value=50 Score=23.95 Aligned_cols=10 Identities=10% Similarity=-0.283 Sum_probs=9.4
Q ss_pred CCeEEEEEEe
Q psy3718 26 SSFHFDPELL 35 (543)
Q Consensus 26 D~G~Y~C~a~ 35 (543)
|+|..+|.|+
T Consensus 54 d~G~w~C~a~ 63 (80)
T PF05790_consen 54 DSGTWVCTAS 63 (80)
T ss_dssp GSEEEEEEEE
T ss_pred CCEEEEEEEc
Confidence 9999999995
No 434
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=45.16 E-value=1.3e+02 Score=23.10 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=18.1
Q ss_pred cccCc-eeeEEEEeCCCCCCCCCCc
Q psy3718 463 ELKSQ-GRGYLVPRGGPPPCPGSDE 486 (543)
Q Consensus 463 ~L~p~-~Y~~~v~A~~~~~~~~~~~ 486 (543)
...-| .|..+|.+|.+-+|..|.+
T Consensus 75 ~v~kgG~y~m~V~lCn~dGCS~S~~ 99 (106)
T cd02848 75 KVGKGGRYQMQVALCNGDGCSTSAA 99 (106)
T ss_pred EeCCCCeEEEEEEEECCCCccCcCC
Confidence 45667 9999999977777766654
No 435
>KOG1378|consensus
Probab=44.47 E-value=2.8e+02 Score=27.82 Aligned_cols=88 Identities=23% Similarity=0.285 Sum_probs=51.6
Q ss_pred CCeeeEEEecCC-CeEEEEeeCCCCCCCCcceeEEEEEEEEcCCC------CCceEEEEe----eeccCCceeEEEECCC
Q psy3718 251 PPTHIKVEATDQ-NTLKVSWSPPERDHWNGVIQGYYVGYKETSTD------KPFLFETVD----FSKEEGKEHHLTLSSL 319 (543)
Q Consensus 251 ~P~~~~~~~~~~-~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~------~~~~~~~~~----~~~~~~~~~~~~i~~L 319 (543)
.|..+.++.... ..+.++|....... =.|.|...... ......... .....+-.+...+.+|
T Consensus 44 ~peQvhlS~~~~~~~m~VswvT~~~~~-------~~V~Yg~~~~~~~~~~~~~~~~~~~~~y~~~~~~sg~ih~~~~~~L 116 (452)
T KOG1378|consen 44 SPEQVHLSFTDNLNEMRVSWVTGDGEE-------NVVRYGEVKDKLDNSAARGMTEAWTDGYANGWRDSGYIHDAVMKNL 116 (452)
T ss_pred CCCeEEEeccCCCCcEEEEEeCCCCCC-------ceEEEeecCCCccccccccceEEEecccccccceeeeEeeeeecCC
Confidence 466777775533 38999999876531 22344422211 000001111 0012345678899999
Q ss_pred CCCCEEEEEEEEEeCCCCCCCCcceeeeccC
Q psy3718 320 KTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350 (543)
Q Consensus 320 ~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~ 350 (543)
++++.|.++|-.- ..+|....|.|.+
T Consensus 117 ~~~t~YyY~~Gs~-----~~wS~~f~F~t~p 142 (452)
T KOG1378|consen 117 EPNTRYYYQVGSD-----LKWSEIFSFKTPP 142 (452)
T ss_pred CCCceEEEEeCCC-----CCcccceEeECCC
Confidence 9999999998442 2268888888865
No 436
>KOG0200|consensus
Probab=44.42 E-value=59 Score=34.44 Aligned_cols=112 Identities=13% Similarity=0.010 Sum_probs=62.0
Q ss_pred ecCceEEEec----CCeEEEEEEecCCCCCCCceEE-E-eCCCeEEe-ecceeEeecCCCeEEEEEeeccCCceEEEccC
Q psy3718 16 LGRVLLPIGE----SSFHFDPELLNPSFNGFPPLLL-S-SAPPEFEI-KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN 88 (543)
Q Consensus 16 ~~~g~L~I~~----D~G~Y~C~a~n~~g~~~s~~l~-v-~~~p~~~~-~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~ 88 (543)
..++.+.+.. |.|.|+|.+.| ......+. . ...+.+.. .+.......+....+ +...+.+.+.|...
T Consensus 10 ~~~~~~~~~~~~~~~~~~y~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 83 (609)
T KOG0200|consen 10 INHWFLIIDSVVPGDKGFYTCLVSN---INLIISLDDIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWGTN 83 (609)
T ss_pred eccceEEEEEEEecCCccEEEEEec---CceeeEeecccCcccccccCCCCCcceeeccccee---eeecCCCcceeeee
Confidence 3455666666 99999999999 11111222 1 11122222 245556667777777 33334778888765
Q ss_pred Ceec---CCCCCCceEE-------eeeecCCCceeeEEEEeeecCCCccEEEEEec
Q psy3718 89 NKRL---DPKSDNRYTI-------REEILPNGVLSDLSIKRTERGDSALFTCEIKS 134 (543)
Q Consensus 89 ~~~i---~~~~~~~~~~-------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n 134 (543)
.... .......... ..... ++....+.+.|+...+.|.|.|...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 84 LEIECEDGLFEYKTKKTLSFVEIEYNRLV-DGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred ecccccccCcchhheeeeeeeeccccccc-cCceEeeeeeccChhhcceeeccCCC
Confidence 4211 0000000000 00111 33456789999999999999999986
No 437
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=43.97 E-value=4.6e+02 Score=28.57 Aligned_cols=118 Identities=12% Similarity=0.117 Sum_probs=61.5
Q ss_pred cccCCCCccceEEEEEEEEEcCCCCCCCCc-cEEEe-ccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEE
Q psy3718 208 VGVPAPEIIWKTYHIRIVAENEIGSSEPSD-TVTIL-TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYY 285 (543)
Q Consensus 208 ~g~p~p~~~w~~y~~~v~a~n~~G~~~~s~-~~~~~-t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~ 285 (543)
.|.|. -.|.++++|.|..|....-. ...+. ..+..|+..+..+..... .-.+.+.|-.|.. .-.+..-.
T Consensus 665 ~gi~~-----GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~i-t~~~~l~v~dPt~---~~d~~~se 735 (952)
T COG4733 665 EGIPA-----GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVII-TLVIRLVVGDPTG---AVDITSTE 735 (952)
T ss_pred cCcCc-----cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEE-EeeeeEEEecCCc---ceEEeeee
Confidence 44666 79999999999999865444 22222 233344333333333322 2346677776642 11222222
Q ss_pred EEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCC
Q psy3718 286 VGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGP 339 (543)
Q Consensus 286 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~ 339 (543)
+++......+.. -..+- ........--+|+++..|.|+++++|..|.+.
T Consensus 736 i~~s~~~d~~~~-Ar~LG----~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~ 784 (952)
T COG4733 736 IRSAVIADGNFQ-ARSLG----NLNYPGLFSVGIQAGLTFWFRNRNVDLVGNND 784 (952)
T ss_pred eeeeccccchhH-Hhhhh----ccccccccccCcCCCceEEEEeeecccccccc
Confidence 333222221110 00000 00111122268999999999999999998654
No 438
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=42.83 E-value=29 Score=26.01 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=21.2
Q ss_pred ceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718 513 DNFTATYTEDIKLPCLTVGVPAPEIIWKT 541 (543)
Q Consensus 513 ~~~~~~~~~~~~l~c~~~g~p~p~~~w~~ 541 (543)
...++..|++|+|.|...- +.-...|+|
T Consensus 8 p~~vV~~G~~VTL~C~~~~-~~~~f~l~k 35 (94)
T cd05711 8 PSPVVPSGENVTLQCHSDI-RFDRFILYK 35 (94)
T ss_pred CCCccCCCCeEEEEEecCC-CCCEEEEEE
Confidence 4467789999999997765 555677766
No 439
>PF14292 SusE: SusE outer membrane protein
Probab=42.23 E-value=1.1e+02 Score=24.15 Aligned_cols=30 Identities=7% Similarity=0.163 Sum_probs=20.5
Q ss_pred ceEEEEeeCCCCCCCCc-ceeEEEEEEeeCCCC
Q psy3718 409 TDIRASWVSPPLITANG-VIKGYKVVYGPSDTW 440 (543)
Q Consensus 409 ~~~~l~W~~p~~~~~~g-~i~~Y~i~~~~~~~~ 440 (543)
..++++|.++ ..... ....|.|+....+.+
T Consensus 45 ~a~tftW~~~--~~~~~~a~v~Y~lq~~~~~~~ 75 (122)
T PF14292_consen 45 NAVTFTWTAA--DYGGPDAPVTYTLQFDKKGND 75 (122)
T ss_pred ceEEEEEECC--ccCCCCCceEEEEEEeccCCC
Confidence 3578999988 54433 456799998775543
No 440
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=40.66 E-value=3.6e+02 Score=26.37 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=64.9
Q ss_pred ecCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCeEEeecceeEeecCC-CeEEEEEeecc--CCceEEEcc
Q psy3718 16 LGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPEFEIKLRNQTSRRGE-PSVLQCEAKGE--KPIGILWNM 87 (543)
Q Consensus 16 ~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~~~~~~~~~~v~~g~-~~~l~C~~~g~--p~~~i~W~~ 87 (543)
+.+.+|+|.+ .+|=|+|+|....-.. ....|.|...-.|.=. .+|+ .....|-+... -++.|.|.-
T Consensus 343 lk~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W~------~e~~n~T~V~Cyv~sy~~kp~si~wkv 416 (500)
T PHA02914 343 LKNSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFKWN------TEGDNETKVACYAAQYDMQPFSILWKS 416 (500)
T ss_pred hhhceEEeeeEEEEcCCceEEEEecCcchhhhhhheEeccEEEEEEE------eccCceEEEEEEEEecccCCceeEEEE
Confidence 3457999999 8999999999863322 3456777544333211 1333 34678987654 346799998
Q ss_pred CCeecCCCCCCceE-EeeeecCCCceeeEEEEeeecCC-CccEEEEEecccce
Q psy3718 88 NNKRLDPKSDNRYT-IREEILPNGVLSDLSIKRTERGD-SALFTCEIKSQKIS 138 (543)
Q Consensus 88 ~~~~i~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D-~G~Y~C~a~n~~~s 138 (543)
+|..........+. ........-....+.|.+-...| --.-.|..-...+-
T Consensus 417 nGV~~~G~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Y 469 (500)
T PHA02914 417 NGVSFGGEIADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGY 469 (500)
T ss_pred ccEEecCeecCcccccccccccccceEEEEEecccCccccccceEEEecCCCc
Confidence 87654322111111 01111112234567887776666 33445655554333
No 441
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=39.46 E-value=1.5e+02 Score=21.73 Aligned_cols=60 Identities=10% Similarity=0.036 Sum_probs=33.9
Q ss_pred ceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCC--Cccccc---cccCc-eeeEEEEe
Q psy3718 409 TDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPR--GRNMYE---ELKSQ-GRGYLVPR 475 (543)
Q Consensus 409 ~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~L~p~-~Y~~~v~A 475 (543)
..+.|+|+.. . .....|.|.+...... ....+......++. ..+.+. +|.++ .|.|++..
T Consensus 13 ~~~~I~W~~~--~---~~~~~~~I~L~~g~~~--~~~~~~~ia~~v~~~~gs~~~~~p~~l~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 13 QPITITWTSD--G---TDPGNVTIYLCNGNNT--NLNFVQTIASNVSNSDGSYTWTIPSDLPSGGDYFIQIVN 78 (93)
T ss_pred CcEEEEEeCC--C---CCCcEEEEEEEcCCCC--CcceeEEEEecccCCCCEEEEEcCCCCCCCCcEEEEEEE
Confidence 4578999865 2 2225677776665542 11111112222332 344444 79999 99999988
No 442
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=38.62 E-value=1.7e+02 Score=29.74 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=24.2
Q ss_pred CCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcceeeeccCCCCCCCCCCcEEEEec
Q psy3718 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLT 366 (543)
Q Consensus 308 ~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~~~p~~~P~~~~~~~~~ 366 (543)
......+.+++|+|++.|.+++.+-.. +..+..-.++|. |...+..+++...+
T Consensus 60 ~d~t~~v~v~gL~p~t~Y~Y~~~~~~~---~~~s~~g~~rT~---p~~~~~~~r~a~~S 112 (453)
T PF09423_consen 60 RDFTVKVDVTGLQPGTRYYYRFVVDGG---GQTSPVGRFRTA---PDGDPDPFRFAFGS 112 (453)
T ss_dssp GTTEEEEEE-S--TT-EEEEEEEE--T---TEE---EEEE-----TT-----EEEEEE-
T ss_pred CCeEeecccCCCCCCceEEEEEEEecC---CCCCCceEEEcC---CCCCCCceEEEEEC
Confidence 345678899999999999999998322 334445567776 33233345554433
No 443
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=37.27 E-value=1.2e+02 Score=21.69 Aligned_cols=17 Identities=6% Similarity=-0.252 Sum_probs=13.2
Q ss_pred cccccccCceeeEEEEe
Q psy3718 459 NMYEELKSQGRGYLVPR 475 (543)
Q Consensus 459 ~~~~~L~p~~Y~~~v~A 475 (543)
..++-.++|.|.+++.+
T Consensus 49 ~~~~y~~~G~y~v~l~v 65 (81)
T cd00146 49 VTHTYTKPGTYTVTLTV 65 (81)
T ss_pred eEEEcCCCcEEEEEEEE
Confidence 44445677799999999
No 444
>KOG1480|consensus
Probab=35.66 E-value=22 Score=37.38 Aligned_cols=33 Identities=18% Similarity=-0.064 Sum_probs=26.9
Q ss_pred cCCCeEEecCceEEEec----CCeEEEEEEecCCCCC
Q psy3718 9 GFNPRILLGRVLLPIGE----SSFHFDPELLNPSFNG 41 (543)
Q Consensus 9 ~~~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~ 41 (543)
.+++.+...++.|.|.- |+|.|+|+|.|-++..
T Consensus 173 pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 173 PDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred ccccchhhhcCCccccchhhhhcccceeeeehhhccc
Confidence 34455567788898888 9999999999998875
No 445
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=35.48 E-value=1.5e+02 Score=20.51 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=33.6
Q ss_pred ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718 81 IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139 (543)
Q Consensus 81 ~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv 139 (543)
....|+++++.+. ++.+. ...+.+...+-+...+.+.|.+++.+...+|.+
T Consensus 7 v~H~W~~~g~~~~-----~i~l~---i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~ 57 (66)
T PF11141_consen 7 VYHRWYKNGKLVA-----RIPLP---ISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQV 57 (66)
T ss_pred EEEEEEECCEEEE-----EEEEe---ccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCE
Confidence 5678999998763 22221 112334455556666789999999999887763
No 446
>PHA03286 envelope glycoprotein E; Provisional
Probab=34.69 E-value=2.1e+02 Score=28.45 Aligned_cols=69 Identities=12% Similarity=0.012 Sum_probs=44.5
Q ss_pred ceEEEec----CCeEEEEEEecCCCCCC-C-ceEEEe----C-CCeE-------------Ee-ecceeEeecCCCeEEEE
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSFNGF-P-PLLLSS----A-PPEF-------------EI-KLRNQTSRRGEPSVLQC 73 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g~~~-s-~~l~v~----~-~p~~-------------~~-~~~~~~v~~g~~~~l~C 73 (543)
+.|+|.| ++|.|+=..+|..|... + ..|.|. . +|.. .. .+...-..+|+++.++-
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv 206 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV 206 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence 5899999 99999999999776652 2 345552 1 2222 11 23345678899998776
Q ss_pred Eeecc----C-CceEEEcc
Q psy3718 74 EAKGE----K-PIGILWNM 87 (543)
Q Consensus 74 ~~~g~----p-~~~i~W~~ 87 (543)
..... + ..++.|+.
T Consensus 207 ~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 207 TAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEeecccCCCceEEEEEEE
Confidence 65521 2 26888875
No 447
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=34.66 E-value=3.3e+02 Score=24.14 Aligned_cols=65 Identities=9% Similarity=0.093 Sum_probs=36.7
Q ss_pred eEEEec-----CCeEEEEEEecCCCCCCCceEE------EeCCCeEEeecceeEeecCCCeEEEEEeeccCC--ceEEEc
Q psy3718 20 LLPIGE-----SSFHFDPELLNPSFNGFPPLLL------SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKP--IGILWN 86 (543)
Q Consensus 20 ~L~I~~-----D~G~Y~C~a~n~~g~~~s~~l~------v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~--~~i~W~ 86 (543)
+|.|.. -.-..+|.+.=..+...+..+. |..+|.+.+. + ..-...|.+.=.|. ..+.|.
T Consensus 40 tl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv~-----F---~~g~AVC~A~CVP~~~v~l~W~ 111 (211)
T PF02124_consen 40 TLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSVR-----F---EDGYAVCTARCVPRGNVTLRWS 111 (211)
T ss_pred EEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEEE-----e---cCCEEEEEcceeeCCCeEEEEE
Confidence 566643 2347788776555544333322 3445554442 2 34456677766552 799999
Q ss_pred cCCeec
Q psy3718 87 MNNKRL 92 (543)
Q Consensus 87 ~~~~~i 92 (543)
-++.+.
T Consensus 112 v~d~~~ 117 (211)
T PF02124_consen 112 VGDDPS 117 (211)
T ss_pred ECCccC
Confidence 776654
No 448
>PHA03189 UL14 tegument protein; Provisional
Probab=31.60 E-value=2.8e+02 Score=25.91 Aligned_cols=21 Identities=14% Similarity=0.615 Sum_probs=16.0
Q ss_pred eEEEEeeecCCCccEEEEEecc
Q psy3718 114 DLSIKRTERGDSALFTCEIKSQ 135 (543)
Q Consensus 114 ~L~i~~~~~~D~G~Y~C~a~n~ 135 (543)
+|++ ++..+-+|.|.|+..|.
T Consensus 135 tLtF-~v~t~taG~Y~CvLrN~ 155 (348)
T PHA03189 135 TLTF-RVSTSTAGMYECVLRNE 155 (348)
T ss_pred EEEE-EEEecccceEEEEeccc
Confidence 3444 45667899999999996
No 449
>PHA03282 envelope glycoprotein E; Provisional
Probab=30.54 E-value=86 Score=31.06 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=22.7
Q ss_pred CCeEEecCceEEEec----CCeEEEEEEecC
Q psy3718 11 NPRILLGRVLLPIGE----SSFHFDPELLNP 37 (543)
Q Consensus 11 ~~~~~~~~g~L~I~~----D~G~Y~C~a~n~ 37 (543)
..|....|++|.|.+ |+|.|+-.+...
T Consensus 116 ~~rvs~~n~tl~l~~a~~~DsG~Y~L~~~~~ 146 (540)
T PHA03282 116 PPRVAVVNGTLVLREARETDSGMYVLSVSRA 146 (540)
T ss_pred CcceeEecceEEEeeccccCCceEEEEecCC
Confidence 467778899999999 999999986543
No 450
>KOG4597|consensus
Probab=28.11 E-value=37 Score=33.52 Aligned_cols=37 Identities=8% Similarity=0.045 Sum_probs=30.8
Q ss_pred ceEEEecceEEEeecCceeecceecCCCCCeeeEEec
Q psy3718 506 ARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTF 542 (543)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~~ 542 (543)
+.+..-+-...+..+++.++.|=+.|.|.|+|+|.|.
T Consensus 197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv 233 (560)
T KOG4597|consen 197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQV 233 (560)
T ss_pred cccccCcchhhcccchhhcccccccCCcCceeeeehh
Confidence 4444445567888999999999999999999999985
No 451
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=28.06 E-value=51 Score=33.05 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=14.1
Q ss_pred ecCceEEEec----CCeEEEEEEecCCCCCC--CceEEEeC--------CCe-----------EEe-ecceeEeecCCCe
Q psy3718 16 LGRVLLPIGE----SSFHFDPELLNPSFNGF--PPLLLSSA--------PPE-----------FEI-KLRNQTSRRGEPS 69 (543)
Q Consensus 16 ~~~g~L~I~~----D~G~Y~C~a~n~~g~~~--s~~l~v~~--------~p~-----------~~~-~~~~~~v~~g~~~ 69 (543)
..+|.|.|.+ |+|.|+=...|..|... ...|.|.. +|. |.. .+..+-..+|+++
T Consensus 86 ~~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf 165 (439)
T PF02480_consen 86 FNKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTF 165 (439)
T ss_dssp ------------------------------------------------------------SEEEEEE--SEEE--TT--E
T ss_pred ecCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcE
Confidence 4457899999 99999999998777652 24555522 121 222 2345667889999
Q ss_pred EEEEEeecc----CC--ceEEEcc
Q psy3718 70 VLQCEAKGE----KP--IGILWNM 87 (543)
Q Consensus 70 ~l~C~~~g~----p~--~~i~W~~ 87 (543)
.+.-...-. ++ .+|.|+.
T Consensus 166 ~~~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 166 HLSVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp E---EEEEEESSS--EEEEEEEEE
T ss_pred EEeEEEEeccCCCCCeeEEEEEEE
Confidence 887776432 11 5888885
No 452
>KOG3834|consensus
Probab=27.43 E-value=1.4e+02 Score=29.42 Aligned_cols=71 Identities=15% Similarity=0.289 Sum_probs=49.9
Q ss_pred eeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEE
Q psy3718 254 HIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV 329 (543)
Q Consensus 254 ~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V 329 (543)
.+++.......+++.|..+.+.. .+.+.++.|.|+....-....|..+.+. ...-.-+.+|.+++.|.+-+
T Consensus 67 kltv~n~kt~~~R~v~I~ps~~w-ggqllGvsvrFcsf~~A~~~vwHvl~V~----p~SPaalAgl~~~~DYivG~ 137 (462)
T KOG3834|consen 67 KLTVYNSKTQEVRIVEIVPSNNW-GGQLLGVSVRFCSFDGAVESVWHVLSVE----PNSPAALAGLRPYTDYIVGI 137 (462)
T ss_pred EEEEEecccceeEEEEecccccc-cccccceEEEeccCccchhheeeeeecC----CCCHHHhcccccccceEecc
Confidence 55666666778888998887764 4558999999988765444444544332 22356678999999998766
No 453
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=27.32 E-value=62 Score=22.51 Aligned_cols=38 Identities=13% Similarity=-0.025 Sum_probs=24.8
Q ss_pred CcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCcc-ccccccCc-eeeEEEE
Q psy3718 424 NGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRN-MYEELKSQ-GRGYLVP 474 (543)
Q Consensus 424 ~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~p~-~Y~~~v~ 474 (543)
.|.=-.|++..+..++- +=+..+ .-.+|+|| ++++++-
T Consensus 25 ~GR~~syr~~Vq~NGnL-------------LIG~AYT~~m~L~PGdEFeI~Lg 64 (71)
T PF14250_consen 25 RGRKASYRVSVQGNGNL-------------LIGSAYTKQMGLKPGDEFEIKLG 64 (71)
T ss_pred CCcCceEEEEEecCCCE-------------EEcHHHHHHhCCCCCCEEEEEeC
Confidence 44556788888776653 233333 33399999 9998763
No 454
>PHA03283 envelope glycoprotein E; Provisional
Probab=26.38 E-value=4.3e+02 Score=26.92 Aligned_cols=70 Identities=11% Similarity=0.188 Sum_probs=45.3
Q ss_pred ceEEEec----CCeEEEEEEecCCCCCCC-ceEEEeC--------CC------------eEEeec-ceeEeecCCCeEEE
Q psy3718 19 VLLPIGE----SSFHFDPELLNPSFNGFP-PLLLSSA--------PP------------EFEIKL-RNQTSRRGEPSVLQ 72 (543)
Q Consensus 19 g~L~I~~----D~G~Y~C~a~n~~g~~~s-~~l~v~~--------~p------------~~~~~~-~~~~v~~g~~~~l~ 72 (543)
+.|+|.| ++|.|+-..+|..+...+ ..|+|.. || .|.... ...-..+|+++.+.
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ls 213 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLS 213 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEe
Confidence 5899999 999999999987662222 3555633 12 222222 23556899999987
Q ss_pred EEeecc---C--CceEEEccC
Q psy3718 73 CEAKGE---K--PIGILWNMN 88 (543)
Q Consensus 73 C~~~g~---p--~~~i~W~~~ 88 (543)
-..... + ..++.|+.-
T Consensus 214 i~l~s~~~d~~fs~~i~Wyy~ 234 (542)
T PHA03283 214 VHLESDIGDPSFSATIDWYYM 234 (542)
T ss_pred EEEeeccCCCCceEEEEEEEe
Confidence 776432 2 268899853
No 455
>KOG4228|consensus
Probab=25.60 E-value=87 Score=34.81 Aligned_cols=110 Identities=19% Similarity=0.197 Sum_probs=69.8
Q ss_pred EEEEcCCCCCCCCccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEe
Q psy3718 224 IVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVD 303 (543)
Q Consensus 224 v~a~n~~G~~~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~ 303 (543)
+.+....|.+..+..+.+.+....|..+. ...+...+.+.|.++. ...+..|.+.+...+.... .. +.
T Consensus 144 ~~~~~~~~~~~~~t~i~i~~~~~~p~~~~-----~~~~~~~it~~w~~~~----~~~~~~ykl~~~~~d~~~~--~~-v~ 211 (1087)
T KOG4228|consen 144 PLAIASPGLGPPSTYIQITTNANSPIQPG-----EEEEYTTITGSWSPPH----AVSLDTYKLLHLDPDTGYE--IS-VT 211 (1087)
T ss_pred ccccCCcccCCCCceEEEeccCCCCCCCC-----cceEEEEEEecCCCCC----cccchhhhhhhcCCcccce--ee-ee
Confidence 66667777777776777777777776544 4455678999999986 4567888887766533221 11 11
Q ss_pred eeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcceeeecc
Q psy3718 304 FSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA 349 (543)
Q Consensus 304 ~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~ 349 (543)
..........++.|...+.++..+....+.+.....+...+.
T Consensus 212 ----~~~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i~~r~~ 253 (1087)
T KOG4228|consen 212 ----LTPPGSGGTGDLGPPSISRFKCAEPDRGPLGSSTAEIEARQL 253 (1087)
T ss_pred ----ccCCCCCcccCCCCcccccccccCccccccCCCCcceEEEeh
Confidence 122334455678888888888877766665554544544443
No 456
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=24.85 E-value=55 Score=24.87 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=18.9
Q ss_pred eecCceeecceecCCCCCeeeEEec
Q psy3718 518 TYTEDIKLPCLTVGVPAPEIIWKTF 542 (543)
Q Consensus 518 ~~~~~~~l~c~~~g~p~p~~~w~~~ 542 (543)
+-|.+ -.+|+++|.|.|++.=+||
T Consensus 61 r~G~s-~~~clV~G~trp~~sc~~f 84 (131)
T PF14459_consen 61 RSGSS-PMHCLVIGSTRPKISCPRF 84 (131)
T ss_pred ecCCC-ceEEEEecCCCCCcccceE
Confidence 34555 6689999999999987665
No 457
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=23.70 E-value=69 Score=32.14 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=16.5
Q ss_pred eEEEEeeecCCCccEEEEEec
Q psy3718 114 DLSIKRTERGDSALFTCEIKS 134 (543)
Q Consensus 114 ~L~i~~~~~~D~G~Y~C~a~n 134 (543)
+|.+.|+..+++|.|.|++.-
T Consensus 270 ~l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 270 DLQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp SEEESS--GGG-EEEEEEEEE
T ss_pred ceEecCCCcccCceEEEEEEE
Confidence 699999999999999999966
No 458
>COG3908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.67 E-value=1.4e+02 Score=20.51 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=17.9
Q ss_pred ceEEEecceEE-EeecCceeecceecCCCCC
Q psy3718 506 ARIASFNDNFT-ATYTEDIKLPCLTVGVPAP 535 (543)
Q Consensus 506 ~~~~~~~~~~~-~~~~~~~~l~c~~~g~p~p 535 (543)
+.|.-.+..+. ++.|+-+ .|.++|+|-|
T Consensus 13 a~iryldgdf~vv~~GsfV--~CAVtgk~IP 41 (77)
T COG3908 13 AVIRYLDGDFQVVSPGSFV--LCAVTGKPIP 41 (77)
T ss_pred eEEEEecCceEEEcCCcEE--EEEecCCccc
Confidence 45655555443 4455543 5999999887
No 459
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=23.10 E-value=3.4e+02 Score=29.12 Aligned_cols=72 Identities=15% Similarity=0.270 Sum_probs=46.1
Q ss_pred CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCC-------CceEEEEeeeccCCceeEEEECCCCCCC
Q psy3718 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDK-------PFLFETVDFSKEEGKEHHLTLSSLKTYT 323 (543)
Q Consensus 251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~L~p~t 323 (543)
+...+++...+.+.+.|.|+.... -..|.|++....... ...|..... . .....--..+.|.+
T Consensus 7 ~vtslrI~kLsaN~v~l~WddVG~------NFyY~Ve~a~t~~~~g~~ip~~~~~w~nlg~---T-~~~~wFed~~~p~t 76 (1030)
T PHA02579 7 SVTSLRIDKLSANQVYLTWDDVGA------NFYYFVELAETRDADGELIPDDELRWINLGY---T-ANNEWFEDKLQPNT 76 (1030)
T ss_pred cccEEEhhhhccceEEEEeeccCC------ceEEEEEEEeeccCCCccCCCccccceecCc---c-cchhhhhhccCCcc
Confidence 455788889999999999998643 368888887543221 111222211 1 12222334499999
Q ss_pred EEEEEEEEE
Q psy3718 324 QYSVVVQAL 332 (543)
Q Consensus 324 ~Y~~~V~a~ 332 (543)
.|.++|+..
T Consensus 77 ~Yk~Rv~~~ 85 (1030)
T PHA02579 77 YYKFRVAVA 85 (1030)
T ss_pred eEEEEEEee
Confidence 999999775
No 460
>KOG3834|consensus
Probab=20.95 E-value=7.3e+02 Score=24.70 Aligned_cols=59 Identities=17% Similarity=0.109 Sum_probs=39.6
Q ss_pred cceEEEEeeCCCCCCCCcceeEEEEEEeeCCCC---CCCCCccceeeeeCCCCccccccccCc-eeeEEE
Q psy3718 408 CTDIRASWVSPPLITANGVIKGYKVVYGPSDTW---YGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLV 473 (543)
Q Consensus 408 ~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v 473 (543)
.-.+++.|..| .....|++.+|.|++...+.. .|+... +.+.+-..+.||.|+ .|.+-+
T Consensus 75 t~~~R~v~I~p-s~~wggqllGvsvrFcsf~~A~~~vwHvl~------V~p~SPaalAgl~~~~DYivG~ 137 (462)
T KOG3834|consen 75 TQEVRIVEIVP-SNNWGGQLLGVSVRFCSFDGAVESVWHVLS------VEPNSPAALAGLRPYTDYIVGI 137 (462)
T ss_pred cceeEEEEecc-cccccccccceEEEeccCccchhheeeeee------cCCCCHHHhcccccccceEecc
Confidence 35567788766 355567899999999887543 122222 234445666699999 998777
No 461
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=20.92 E-value=2.5e+02 Score=18.32 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=22.3
Q ss_pred eeEEEECCCCCCCEEEEEEEEEeCCCCCCCC
Q psy3718 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMS 341 (543)
Q Consensus 311 ~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s 341 (543)
.-++.+..+ ....|.|.+.|.+..|.....
T Consensus 13 ~Ws~t~~~~-~dG~y~itv~a~D~AGN~s~~ 42 (54)
T PF13754_consen 13 NWSFTVPAL-ADGTYTITVTATDAAGNTSTS 42 (54)
T ss_pred cEEEeCCCC-CCccEEEEEEEEeCCCCCCCc
Confidence 344566666 688999999999999965433
No 462
>PHA03282 envelope glycoprotein E; Provisional
Probab=20.79 E-value=68 Score=31.70 Aligned_cols=21 Identities=14% Similarity=0.531 Sum_probs=19.5
Q ss_pred eEEEEeeecCCCccEEEEEec
Q psy3718 114 DLSIKRTERGDSALFTCEIKS 134 (543)
Q Consensus 114 ~L~i~~~~~~D~G~Y~C~a~n 134 (543)
+|.+.|+..+++|.|.|++.-
T Consensus 334 dL~F~nAp~saSGLYVfVl~y 354 (540)
T PHA03282 334 NLQLRDASEASGGLYVCVVYV 354 (540)
T ss_pred ceEecCCCcccCceEEEEEEE
Confidence 799999999999999999865
No 463
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=20.24 E-value=37 Score=27.37 Aligned_cols=28 Identities=11% Similarity=-0.001 Sum_probs=17.0
Q ss_pred cccCc-eeeEEEEeCCCCCCCCCCccccc
Q psy3718 463 ELKSQ-GRGYLVPRGGPPPCPGSDETLYS 490 (543)
Q Consensus 463 ~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~ 490 (543)
....+ .|.++|..|..-||..|....+.
T Consensus 78 ~~~~gG~y~~~VeLCN~~GCS~S~~~~V~ 106 (133)
T PF08329_consen 78 TVTKGGRYQMQVELCNADGCSTSAPVEVV 106 (133)
T ss_dssp EE-S-EEEEEEEEEEETTEEEE---EEEE
T ss_pred EecCCCEEEEEEEEECCCCcccCCCEEEE
Confidence 45566 99999999777777666654443
Done!