RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3718
(543 letters)
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 197 bits (501), Expect = 3e-55
Identities = 54/353 (15%), Positives = 105/353 (29%), Gaps = 26/353 (7%)
Query: 56 IKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDL 115
++++N G+ + QC A G G + + + ++
Sbjct: 169 LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSS---RRFIASF 225
Query: 116 SIKRTERGDSALFTCEIKSQ--KISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKN 173
++ T + D+ + C I+++ S +
Sbjct: 226 NVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGAT------YLW 279
Query: 174 VTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEII------WKTYHIRIVAE 227
+ L+ + Y V + Y I ++
Sbjct: 280 IQLNAN---SINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLT 336
Query: 228 N--EIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYY 285
E G+ P + T P P ++V + + W P +
Sbjct: 337 RPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLT 396
Query: 286 VGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVK 345
V Y + + E V + E H T+++L YT SV + +N G S+E+
Sbjct: 397 VHYCYQVGGQEQVREEVSWDTENSHPQH-TITNLSPYTNVSVKLILMNPEGRKE-SQELI 454
Query: 346 QYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
T E P P ++ + + I + W P GVI Y++ Y +
Sbjct: 455 VQTDEDLPGAVPTESIQGSTFEEKIFLQWREPT--QTYGVITLYEITYKAVSS 505
Score = 137 bits (345), Expect = 2e-34
Identities = 40/202 (19%), Positives = 69/202 (34%), Gaps = 9/202 (4%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
+ ++++ N G S + + T E+ P PT +T + + + W P +
Sbjct: 432 YTNVSVKLILMNPEGRK-ESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQT- 489
Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEE--GKEHHLTLSSLKTYTQYSVVVQALNK 334
GVI Y + YK S+ P + + + G E H L T YS ++A
Sbjct: 490 -YGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTA 548
Query: 335 LGPGPMSEEVKQYTAEGTPEQPPQDNTCT-TLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
G GP + + T P P + T T+ V + + Y++V
Sbjct: 549 KGFGPPA-TNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAH--SRGAPVSVYQIVV 605
Query: 394 GPSDTWYGDPKTDICTDIRASW 415
T+I
Sbjct: 606 EEERPRRTKKTTEILKCYPVPI 627
Score = 104 bits (261), Expect = 8e-24
Identities = 37/346 (10%), Positives = 81/346 (23%), Gaps = 23/346 (6%)
Query: 71 LQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC 130
+ + +WN++ + I + I +G A+
Sbjct: 96 VYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEV 155
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFN 190
++ + ++ S G+ L
Sbjct: 156 KVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSA---IGRTVAGDRLWLQGIDVRDAPLKE 212
Query: 191 DNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSG 250
T++ + R + E G + ++ P
Sbjct: 213 IKVTSSRRFIASFNVVNTTK------RDAGKYRCMIRTEGGVGISNYAELVVKE---PPV 263
Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
P ++ + L + + + +G I V Y S ++
Sbjct: 264 PIAPPQLASVGATYLWIQLNANSING-DGPIVAREVEYCTASGSW--------NDRQPVD 314
Query: 311 EHHLTLSSLKTYTQYSVVVQALNK--LGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQ 368
+ L T+Y + V G G ++ T P + P+ + S+
Sbjct: 315 STSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSR 374
Query: 369 TIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRAS 414
I + W V Y + ++ D S
Sbjct: 375 QITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENS 420
Score = 90.6 bits (224), Expect = 2e-19
Identities = 38/347 (10%), Positives = 79/347 (22%), Gaps = 83/347 (23%)
Query: 104 EEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAST 163
+ +L++ + E S + + + L N +
Sbjct: 384 GYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMN 443
Query: 164 NIGEGQPSKNVTL--------SPSNRVPARIAS--------------------------F 189
G S+ + + +
Sbjct: 444 PEGRK-ESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKA 502
Query: 190 NDNFTATYTEDIKLPCLTVGVPAPEII------WKTYHIRIVAENEIGSSEPSDTVTILT 243
+F + ++ + TY I A G P+ T T
Sbjct: 503 VSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPA-TNQFTT 561
Query: 244 AEEAPSGPPTHIKV-EATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
APS P ++ NT+ V P + Y + +E + +
Sbjct: 562 KISAPSMPAYELETPLNQTDNTVTVMLKPAH--SRGAPVSVYQIVVEEERPRRTKKTTEI 619
Query: 303 -----------------------------------DFSKEEGKEH-HLTLSSLKTYTQYS 326
F+ + K + + L Y Y
Sbjct: 620 LKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYR 679
Query: 327 VVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVS 373
+ QA ++ + V+ T +P + T T++ +
Sbjct: 680 IYFQAASRANGETKIDCVQVATKGAATPKPVPEP--EKQTDHTVKGT 724
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 156 bits (396), Expect = 8e-44
Identities = 35/183 (19%), Positives = 61/183 (33%), Gaps = 11/183 (6%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
Y + N +G S+ + +TI + + P +K D N L V W+ P
Sbjct: 71 NDRYLATLTVRNLVGKSDAA-VLTIPACDFQATHPVMDLKAFPKD-NMLWVEWTTP---- 124
Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
++ Y + + S P + + +L Y + V + G
Sbjct: 125 -RESVKKYILEWCVLSDKAPCITDWQQEDG--TVHRTYLRGNLAESKCYLITVTPVYADG 181
Query: 337 PGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPS 396
PG E +K Y + P + P + + W P+ NG I+ Y + Y
Sbjct: 182 PGS-PESIKAYLKQAPPSKGPT-VRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTI 239
Query: 397 DTW 399
Sbjct: 240 IGN 242
Score = 99.5 bits (248), Expect = 2e-23
Identities = 37/246 (15%), Positives = 68/246 (27%), Gaps = 43/246 (17%)
Query: 131 EIKSQKISSQQMT---YEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPA--- 184
+ K Q T + + Y+ +T +G+ + + +
Sbjct: 47 TLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVM 106
Query: 185 --RIASFNDNFTATYTEDIKLP-------CLTVGVPAPEIIWKT---------------- 219
+ ++ +T + C+ W+
Sbjct: 107 DLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAE 166
Query: 220 ---YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
Y I + G P ++ + PS P ++ + +N + W D
Sbjct: 167 SKCYLITVTPVYADGPGSPE-SIKAYLKQAPPSKGP-TVRTKKVGKNEAVLEWDQLPVDV 224
Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
NG I+ Y + Y+ VD TLSSL + T Y V + A G
Sbjct: 225 QNGFIRNYTIFYRT--IIGNETAVNVD-----SSHTEYTLSSLTSDTLYMVRMAAYTDEG 277
Query: 337 PGPMSE 342
E
Sbjct: 278 GKDGPE 283
Score = 87.2 bits (216), Expect = 3e-19
Identities = 22/158 (13%), Positives = 42/158 (26%), Gaps = 22/158 (13%)
Query: 245 EEAPSGPPTH----IKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFE 300
E+ PS P+ T+++ W NG I Y V +
Sbjct: 1 EDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKS------- 53
Query: 301 TVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDN 360
+ + L+ T +Y + N +G + + P +
Sbjct: 54 ----HLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIP-ACDFQATHPVM-D 107
Query: 361 TCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
+ V W +P +K Y + +
Sbjct: 108 LKAFPKDNMLWVEWTTP-----RESVKKYILEWCVLSD 140
Score = 32.9 bits (75), Expect = 0.25
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
P + ++ D A + + Q+ + TY L + + Y+ VT G
Sbjct: 124 PRESVKKYILEWCVLSDKAPCITDWQ-QEDGTVHRTYLRGNLAESKCYLITVTPVYADGP 182
Query: 168 GQPS 171
G P
Sbjct: 183 GSPE 186
Score = 30.2 bits (68), Expect = 1.5
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 409 TDIRASWVSPPLITANGVIKGYKVVYGPSDT 439
++ W + P ANG I Y+V +
Sbjct: 23 RTVQLVWKTLPPFEANGKILDYEVTLTRWKS 53
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 147 bits (373), Expect = 1e-41
Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 217 WKTYHIRIVAENEIGSSEPSD-TVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
W Y R++A N+IG+S PS + + T + P P ++ + T+ N L +SW+P
Sbjct: 72 WANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEI 131
Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKL 335
N YYV +K + + + +++++ ++ T+ +Y + V A+N
Sbjct: 132 EHNAPNFHYYVSWKRDIPAAAWENNNI----FDWRQNNIVIADQPTFVKYLIKVVAINDR 187
Query: 336 GPGPMS-EEVKQYTAE 350
G ++ EEV Y+ E
Sbjct: 188 GESNVAAEEVVGYSGE 203
Score = 95.2 bits (237), Expect = 9e-23
Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 11/154 (7%)
Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
P + + ++ W D+ I Y + + + T + +
Sbjct: 7 NAPKLTGITCQA-DKAEIHWEQQG-DN-RSPILHYTIQFNTSFTPASWDAAYEKVPNTD- 62
Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQY-TAEGTPEQPPQDNTCTTLTSQ 368
+ + + Y+ V A NK+G P S T P + P +
Sbjct: 63 ---SSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPN 119
Query: 369 TIRVSWVSPPLITANGVIKGYKVVY---GPSDTW 399
+ +SW P I N Y V + P+ W
Sbjct: 120 NLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAW 153
Score = 28.5 bits (64), Expect = 4.4
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 138 SSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVT 175
+Q + Y+ V A + GE +
Sbjct: 160 DWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEV 197
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 135 bits (343), Expect = 3e-38
Identities = 44/129 (34%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S T+ TA+ PS PP + + T++VSW PP D NGVI Y V Y+
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
+ S + L L+ +T+Y V V+A +GPGP S V T E
Sbjct: 61 VDGEDRGRHVVDGIS---REHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDE 117
Query: 351 GTPEQPPQD 359
P PP+
Sbjct: 118 DVPSGPPRK 126
Score = 78.6 bits (194), Expect = 1e-17
Identities = 27/63 (42%), Positives = 34/63 (53%)
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
G S ++ TA+ TP PPQ C ++ S T+RVSWV PP + NGVI Y V Y
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60
Query: 396 SDT 398
D
Sbjct: 61 VDG 63
Score = 50.1 bits (120), Expect = 1e-07
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEAT 260
W Y + + A ++G S V + T E+ PSGPP ++ +
Sbjct: 89 WTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGPS 132
Score = 35.8 bits (83), Expect = 0.008
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVP 183
IS + +++ GL+K Y +V A T++G G S V + VP
Sbjct: 68 RHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVP 120
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 134 bits (340), Expect = 6e-38
Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 235 PSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTD 294
S + I T E AP GPP + ++ +++V+W P+++ NGVI+GY +GY+E S
Sbjct: 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61
Query: 295 KPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPE 354
+ V+ K G TL +LK + QY VVVQA N+ G GP S E+ T E P
Sbjct: 62 SNGQYSIVEM-KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPS 120
Score = 66.6 bits (163), Expect = 1e-13
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 338 GPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
G S T E P+ PP D T +TSQ+I+V+W +P NGVI+GY++ Y +
Sbjct: 1 GS-SGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENS 59
Query: 398 T 398
Sbjct: 60 P 60
Score = 38.1 bits (89), Expect = 0.001
Identities = 17/67 (25%), Positives = 21/67 (31%)
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
NGV+ I E + I K + Y LKK Y V A G G
Sbjct: 45 NGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTG 104
Query: 169 QPSKNVT 175
S +
Sbjct: 105 PSSSEIN 111
Score = 37.3 bits (87), Expect = 0.002
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPS 249
+ Y + + A N G+ S + T E PS
Sbjct: 88 FAQYGVVVQAFNRAGTGPSSSEINATTLESGPS 120
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 135 bits (341), Expect = 6e-38
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S V + T + PS P ++ +E + ++ + W PP NG I GY + Y++
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
S V G + + L T+Y+ V AL G GP ++ + T E
Sbjct: 61 ASRKSDVTETLVS-----GTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFE 115
Query: 351 GTPEQPP 357
++
Sbjct: 116 SDLDETR 122
Score = 76.6 bits (189), Expect = 5e-17
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
G S +V T P PQ+ + S++I + W P T NG I GYK+ Y
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60
Query: 396 SDT 398
+
Sbjct: 61 ASR 63
Score = 38.5 bits (90), Expect = 0.001
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPP 252
Y+ R+ A G+ +D ++ T E
Sbjct: 87 GTEYNFRVAALTINGTGPATDWLSAETFESDLDETR 122
Score = 34.6 bits (80), Expect = 0.019
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVT 175
++ +S Q++ GL + Y F V A T G G + ++
Sbjct: 66 DVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLS 110
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 141 bits (357), Expect = 2e-37
Identities = 73/386 (18%), Positives = 123/386 (31%), Gaps = 86/386 (22%)
Query: 52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDN-RYTIREEILPNG 110
P I+L+N+T+ L C+A+GE I W + R E+
Sbjct: 2 PHI-IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
S L IK + DS + CE A++ IG Q
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCE-----------------------------AASRIGGHQK 91
Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK----------TY 220
S + + + S + + I + C P I W+ T
Sbjct: 92 SMYLDI----EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTT 147
Query: 221 HIRI------------------------VAENEIGSSEPSDTVTILTAEEAPSGPPTHIK 256
+++ A N IG+ + + + P P +K
Sbjct: 148 NLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA---DVP-SSPYGVK 203
Query: 257 VEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTL 316
+ Q T KVS++ P+ I Y V KE +++ + + G + + L
Sbjct: 204 IIELSQTTAKVSFNKPDSHG-GVPIHHYQVDVKEVASEIWKIVRS------HGVQTMVVL 256
Query: 317 SSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVS 376
++L+ T Y + V A+N G G S+ T PP + + ++ ++S
Sbjct: 257 NNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHG-QPSSGKSFKLSI-- 313
Query: 377 PPLITANGVIKGYKVVY---GPSDTW 399
I Y V Y D W
Sbjct: 314 TKQDDGGAPILEYIVKYRSKDKEDQW 339
Score = 126 bits (317), Expect = 6e-32
Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 8/134 (5%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
TY IR+ A N G + S T PP+ I + + + K+S + D
Sbjct: 262 NTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS-IHGQPSSGKSFKLSITKQ--DD 318
Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
I Y V Y+ + +L + V G + H+ L L+ Y V + A N+LG
Sbjct: 319 GGAPILEYIVKYRSKDKEDQWLEKKVQ-----GNKDHIILEHLQWTMGYEVQITAANRLG 373
Query: 337 PGPMSEEVKQYTAE 350
+ +
Sbjct: 374 YSEPTVYEFSMPPK 387
Score = 74.1 bits (182), Expect = 2e-14
Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
P+F S G P + C+ K P I W + L K+ +
Sbjct: 99 YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNL----KTYST 154
Query: 110 GVLSDLSIKRTERGDSALFTCEIKS 134
G L I T D + C +
Sbjct: 155 GRKMILEIAPTSDNDFGRYNCTATN 179
Score = 51.0 bits (122), Expect = 5e-07
Identities = 26/142 (18%), Positives = 41/142 (28%), Gaps = 36/142 (25%)
Query: 138 SSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTL--------SPSNRVPARIASF 189
Q + L+ Y V A G+G SK SP + + + +S
Sbjct: 248 HGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS-IHGQPSS- 305
Query: 190 NDNFTAT-----------------YTEDIK---LPCLTVGVPAPEII------WKTYHIR 223
+F + Y K V II Y ++
Sbjct: 306 GKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQ 365
Query: 224 IVAENEIGSSEPSDTVTILTAE 245
I A N +G SEP+ + +
Sbjct: 366 ITAANRLGYSEPTVYEFSMPPK 387
Score = 40.2 bits (94), Expect = 0.001
Identities = 44/258 (17%), Positives = 68/258 (26%), Gaps = 72/258 (27%)
Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIWK---------------TYHIRI------------ 224
N T + L C G P PEI WK I +
Sbjct: 9 NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIK 68
Query: 225 ------------VAENEIGSSEPSDTVTILTAEEAP--SGPPTHIKVEATDQNTLK--VS 268
A + IG + S + I E AP T + + V
Sbjct: 69 DVKLSDSGRYDCEAASRIGGHQKSMYLDI---EYAPKFISNQTIYYSWEGNPINISCDVK 125
Query: 269 WSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLS----SLKTYTQ 324
+PP HW ++ + K + L S + +
Sbjct: 126 SNPPASIHW----------RRD---KLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGR 172
Query: 325 YSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANG 384
Y+ N +G + + A P L+ T +VS+ + P
Sbjct: 173 YNCTAT--NHIG----TRFQEYILALADVPSSPYGVKIIELSQTTAKVSF-NKPDSHGGV 225
Query: 385 VIKGYKVVY--GPSDTWY 400
I Y+V S+ W
Sbjct: 226 PIHHYQVDVKEVASEIWK 243
Score = 34.4 bits (79), Expect = 0.095
Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPAR 185
+ +K+ + L+ Y +TA+ +G +P+ +P +
Sbjct: 338 QWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPT-----VYEFSMPPK 387
Score = 31.7 bits (72), Expect = 0.68
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ S + + I + C P I W+
Sbjct: 98 EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWR 135
Score = 29.8 bits (67), Expect = 2.3
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
N T + L C G P PEI WK
Sbjct: 9 NETTYENGQVTLVCDAEGEPIPEITWK 35
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 132 bits (333), Expect = 6e-37
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 222 IRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVI 281
+ N G +D +T++T + PS PP ++ +E + ++KVSW PP NG I
Sbjct: 2 SSGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFI 61
Query: 282 QGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMS 341
GY + +++T+ ET++ + L+ +QYS V A+ G GP S
Sbjct: 62 TGYKIRHRKTTRRGE--METLE-----PNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPS 114
Query: 342 EEVKQYTAE 350
T E
Sbjct: 115 NWYTAETPE 123
Score = 92.4 bits (230), Expect = 1e-22
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 327 VVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVI 386
+ N+ GPG ++++ T P PPQ+ + + S++I+VSW+ PP T NG I
Sbjct: 2 SSGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFI 61
Query: 387 KGYKVVYGPSDTWY 400
GYK+ + +
Sbjct: 62 TGYKIRHRKTTRRG 75
Score = 36.5 bits (85), Expect = 0.005
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 133 KSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVT 175
+ + + + Y +GL+K Y F V+A T G G PS T
Sbjct: 76 EMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYT 118
Score = 32.3 bits (74), Expect = 0.11
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAE 245
Y ++ A G+ PS+ T T E
Sbjct: 95 GSQYSFQVSAMTVNGTGPPSNWYTAETPE 123
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 136 bits (345), Expect = 6e-36
Identities = 30/182 (16%), Positives = 68/182 (37%), Gaps = 24/182 (13%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
Y++ + + S P + P PPT ++ +T++V+W+PP
Sbjct: 68 GLEYNVSVYTVKDDKESVPI---SDTIIPAVP--PPTDLRFTNIGPDTMRVTWAPPP--- 119
Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
+ + + V Y ++ ++ ++ + L++L T+Y V V ++ +
Sbjct: 120 -SIDLTNFLVRYSPVKNEEDVAELSIS-----PSDNAVVLTNLLPGTEYVVSVSSVYEQH 173
Query: 337 PGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPS 396
+ T P + +T+ + V W++P I GY++ + P
Sbjct: 174 ESTPLR-----GRQKTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPE 223
Query: 397 DT 398
Sbjct: 224 HF 225
Score = 129 bits (326), Expect = 2e-33
Identities = 46/289 (15%), Positives = 89/289 (30%), Gaps = 53/289 (18%)
Query: 137 ISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTL----SPSNRVPARIASFN-- 190
+ + Q + L Y V + E P + + P++ + +
Sbjct: 53 VHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTD-LRFTNIGPDTM 111
Query: 191 ------------DNFTATYTE---DIKLPCLTVGVPAPEII------WKTYHIRIVAENE 229
NF Y+ + + L++ ++ Y + + + E
Sbjct: 112 RVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYE 171
Query: 230 IGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYK 289
S P + PT I N+ V W P I GY + +
Sbjct: 172 QHESTPLRGRQ-----KTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHH 221
Query: 290 ETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA 349
+ V + +TL++L T+Y V + ALN P+
Sbjct: 222 PEHFSGRPREDRVP-----HSRNSITLTNLTPGTEYVVSIVALNGREESPLLI-----GQ 271
Query: 350 EGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
+ T P+D T ++ +SW +P ++ Y++ YG +
Sbjct: 272 QSTVSDVPRDLEVVAATPTSLLISWDAP-----AVTVRYYRITYGETGG 315
Score = 99.5 bits (248), Expect = 6e-23
Identities = 42/238 (17%), Positives = 71/238 (29%), Gaps = 40/238 (16%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSK-----------NVTLSPS 179
++ IS + L Y+ V++ E P + + S
Sbjct: 138 DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDI 197
Query: 180 NRVPARI-----ASFNDNFTATYTE---DIKLPCLTVGVPAPEII------WKTYHIRIV 225
+ + + + + V I Y + IV
Sbjct: 198 TANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIV 257
Query: 226 AENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYY 285
A N S + S P ++V A +L +SW P ++ Y
Sbjct: 258 ALNGREESPLLIGQ-----QSTVSDVPRDLEVVAATPTSLLISWDAP-----AVTVRYYR 307
Query: 286 VGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE 343
+ Y ET + P TV G + T+S LK Y++ V A+ G P S +
Sbjct: 308 ITYGETGGNSPVQEFTVP-----GSKSTATISGLKPGVDYTITVYAVTGRGDSPASSK 360
Score = 88.4 bits (219), Expect = 4e-19
Identities = 38/166 (22%), Positives = 57/166 (34%), Gaps = 18/166 (10%)
Query: 248 PSGPPTHIKVEA-TDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
P PPT++ +EA D L VSW I GY + T+ + E V
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERST----TPDITGYRITTTPTNGQQGNSLEEV---- 52
Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLT 366
+ T +L +Y+V V + S + P PP D T +
Sbjct: 53 VHADQSSCTFDNLSPGLEYNVSVYTVK---DDKESVPISDTIIPAVP--PPTDLRFTNIG 107
Query: 367 SQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIR 412
T+RV+W PP + + + V Y P + I
Sbjct: 108 PDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSISPSDN 149
Score = 41.4 bits (97), Expect = 6e-04
Identities = 20/160 (12%), Positives = 41/160 (25%), Gaps = 30/160 (18%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
P ++ I+ S + ++ + + + L Y+ + A E
Sbjct: 209 PRATITGYRIRHHPEHFSG----RPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREE 264
Query: 168 GQPSKNVTLSPSNRVPA-RIASFNDN---------------FTATYTE---DIKLPCLTV 208
+ S+ + + + TY E + + TV
Sbjct: 265 SPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTV 324
Query: 209 GVPAPEII------WKTYHIRIVAENEIGSSEPS-DTVTI 241
Y I + A G S S ++I
Sbjct: 325 PGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISI 364
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 134 bits (340), Expect = 3e-35
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 23/182 (12%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
Y++ + + S P ++ E P T + +++ + W+P
Sbjct: 69 GLEYNVSVYTVKDDKESVP---ISDTIIPEVP--QLTDLSFVDITDSSIGLRWTPLN--- 120
Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
+ I GY + P + VD + T++ L+ Y + V L G
Sbjct: 121 -SSTIIGYRITVVAAGEGIPIFEDFVD-----SSVGYYTVTGLEPGIDYDISVITLINGG 174
Query: 337 PGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPS 396
+ + T PP D T + T+RV+W PP + + + V Y P
Sbjct: 175 ESAPTTLT-----QQTAVPPPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPV 225
Query: 397 DT 398
Sbjct: 226 KN 227
Score = 120 bits (302), Expect = 5e-30
Identities = 41/293 (13%), Positives = 91/293 (31%), Gaps = 52/293 (17%)
Query: 133 KSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRV---------- 182
+ + + Q + L Y V + E P + + ++
Sbjct: 50 LEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDITD 109
Query: 183 --------PARIASFNDNFTATYTE---DIKLPCLTVGVPAPEII------WKTYHIRIV 225
P ++ + T I + V Y I ++
Sbjct: 110 SSIGLRWTPLNSSTI-IGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVI 168
Query: 226 AENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYY 285
G S P+ + PPT ++ +T++V+W+PP + + +
Sbjct: 169 TLINGGESAPTTLTQ-----QTAVPPPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFL 219
Query: 286 VGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVK 345
V Y ++ ++ ++ + L++L T+Y V V ++ +
Sbjct: 220 VRYSPVKNEEDVAELSIS-----PSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR--- 271
Query: 346 QYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
+ T P + +T+ + V W++P I GY++ + P
Sbjct: 272 --GRQKTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPEHF 317
Score = 94.9 bits (236), Expect = 2e-21
Identities = 43/273 (15%), Positives = 76/273 (27%), Gaps = 48/273 (17%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
+ + I G+ I + S Y +GL+ +Y V N GE
Sbjct: 120 NSSTIIGYRITVVAAGEGI----PIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGE 175
Query: 168 GQPSKNVTLSPSNRVP---------------------ARIASFNDNFTATYTEDIKLPCL 206
P+ + + +F ++ E+ L
Sbjct: 176 SAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDV-AEL 234
Query: 207 TVGVPAPEII------WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEAT 260
++ ++ Y + + + E S P + PT I
Sbjct: 235 SISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQ-----KTGLDSPTGIDFSDI 289
Query: 261 DQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLK 320
N+ V W P I GY + + + V + +TL++L
Sbjct: 290 TANSFTVHWIAP-----RATITGYRIRHHPEHFSGRPREDRVP-----HSRNSITLTNLT 339
Query: 321 TYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
T+Y V + ALN P+ Q T
Sbjct: 340 PGTEYVVSIVALNGREESPLLIGQ-QSTVSAHH 371
Score = 88.7 bits (220), Expect = 2e-19
Identities = 31/153 (20%), Positives = 51/153 (33%), Gaps = 18/153 (11%)
Query: 248 PSGPPTHIKVEA-TDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
P PPT++ +EA D L VSW I GY + T+ + E V
Sbjct: 2 PLSPPTNLHLEANPDTGVLTVSWERST----TPDITGYRITTTPTNGQQGNSLEEV---- 53
Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLT 366
+ T +L +Y+V V + S + P D + +T
Sbjct: 54 VHADQSSCTFDNLSPGLEYNVSVYTVK---DDKESVPISDTIIPEVP--QLTDLSFVDIT 108
Query: 367 SQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW 399
+I + W + I GY++ +
Sbjct: 109 DSSIGLRWTPLN----SSTIIGYRITVVAAGEG 137
Score = 39.4 bits (92), Expect = 0.003
Identities = 20/149 (13%), Positives = 33/149 (22%), Gaps = 29/149 (19%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFN 190
++ IS + L Y+ V++ E P + + + S
Sbjct: 230 DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDI 289
Query: 191 DNFTAT-----------------YTEDIKLPCLTVGVPAPE--------IIWKTYHIRIV 225
+ T + E VP Y + IV
Sbjct: 290 TANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIV 349
Query: 226 AENEIGSSEPSDTVTILTAEEAPSGPPTH 254
A N S T + H
Sbjct: 350 ALNGREESPLL-IGQQST---VSAHHHHH 374
Score = 36.7 bits (85), Expect = 0.015
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 353 PEQPPQDNTCTTLTSQT-IRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDI 407
P PP + + VSW I GY++ P++ G+ ++
Sbjct: 2 PLSPPTNLHLEANPDTGVLTVSWERST----TPDITGYRITTTPTNGQQGNSLEEV 53
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 129 bits (325), Expect = 1e-34
Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 9/137 (6%)
Query: 217 WKTYHIRIVAENEIGSSEPSDT----VTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPP 272
TY RI+A ++ S+T A P P +++E + + + WS
Sbjct: 80 QHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLA 139
Query: 273 ERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQAL 332
+I GYY Y+ +S+ + T+ E ++ L+T T Y +Q+
Sbjct: 140 SDA-DEHLITGYYAYYRPSSSAGEYFKATI----EGAHARSFKIAPLETATMYEFKLQSF 194
Query: 333 NKLGPGPMSEEVKQYTA 349
+ S + T
Sbjct: 195 SAASASEFSALKQGRTQ 211
Score = 87.2 bits (216), Expect = 9e-20
Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 14/161 (8%)
Query: 249 SGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPF-------LFET 301
+ PPT V ++ + W P D I + V Y+ K + +
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRND--GLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 59
Query: 302 VDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQ----PP 357
++ E GK +++ LK Y + A+ S ++ + P
Sbjct: 60 PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVP 119
Query: 358 QDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
+ + + + W S +I GY Y PS +
Sbjct: 120 ELLEIEEYSETAVVLHW-SLASDADEHLITGYYAYYRPSSS 159
Score = 30.5 bits (69), Expect = 0.92
Identities = 4/34 (11%), Positives = 14/34 (41%)
Query: 138 SSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS 171
+ +++ + L+ Y F + + + + S
Sbjct: 170 GAHARSFKIAPLETATMYEFKLQSFSAASASEFS 203
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 128 bits (324), Expect = 9e-34
Identities = 32/182 (17%), Positives = 54/182 (29%), Gaps = 24/182 (13%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
Y + + A + +S P+ V PP +V + T+ +SW
Sbjct: 84 ATKYEVSVYALKDTLTSRPAQGVVTTL---ENVSPPRRARVTDATETTITISWRTK---- 136
Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
I G+ V + P + T++ L+ T Y + + LN
Sbjct: 137 -TETITGFQVDAVPANGQTPIQRTI------KPDVRSYTITGLQPGTDYKIYLYTLNDNA 189
Query: 337 PGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPS 396
T P + T ++ VSW P I GY + Y
Sbjct: 190 RSSPVV-----IDASTAIDAPSNLRFLATTPNSLLVSWQPP-----RARITGYIIKYEKP 239
Query: 397 DT 398
+
Sbjct: 240 GS 241
Score = 116 bits (293), Expect = 2e-29
Identities = 35/174 (20%), Positives = 57/174 (32%), Gaps = 22/174 (12%)
Query: 225 VAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGY 284
+A + S + + + PT +K +L W+PP N + GY
Sbjct: 1 MAHHHHHHSSGLEVLF----QGPAIPAPTDLKFTQVTPTSLSAQWTPP-----NVQLTGY 51
Query: 285 YVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV 344
V P + + +S L T+Y V V AL ++ V
Sbjct: 52 RVRVTPKEKTGPMKEINLA-----PDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGV 106
Query: 345 KQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
PP+ T T TI +SW + I G++V P++
Sbjct: 107 VTTL---ENVSPPRRARVTDATETTITISWRTK-----TETITGFQVDAVPANG 152
Score = 95.6 bits (238), Expect = 4e-22
Identities = 43/258 (16%), Positives = 80/258 (31%), Gaps = 45/258 (17%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
PN L+ ++ T + + +K ++ + SGL Y V A +
Sbjct: 44 PNVQLTGYRVRVTPKEKTG----PMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLT 99
Query: 168 GQPSKNVTLSPSNRVPAR---IASFNDN---------------FTATYTEDIKLPCLTVG 209
+P++ V + N P R + + F +
Sbjct: 100 SRPAQGVVTTLENVSPPRRARVTDATETTITISWRTKTETITGFQVDAVPANGQTPIQRT 159
Query: 210 VPAPEIIWK--------TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATD 261
+ + Y I + N+ S P P++++ AT
Sbjct: 160 IKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDA-----STAIDAPSNLRFLATT 214
Query: 262 QNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKT 321
N+L VSW PP I GY + Y++ + + T++ L+
Sbjct: 215 PNSLLVSWQPP-----RARITGYIIKYEKPGSPPREVVPRPR-----PGVTEATITGLEP 264
Query: 322 YTQYSVVVQALNKLGPGP 339
T+Y++ V AL
Sbjct: 265 GTEYTIYVIALKNNQKSE 282
Score = 35.9 bits (83), Expect = 0.025
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
P ++ IK + G + +GL+ Y YV A N +
Sbjct: 225 PRARITGYIIKYEKPGSPP----REVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQK 280
Query: 168 GQPS 171
+P
Sbjct: 281 SEPL 284
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 126 bits (318), Expect = 1e-33
Identities = 33/158 (20%), Positives = 51/158 (32%), Gaps = 12/158 (7%)
Query: 246 EAPSGPPTHIKVEATDQNTLKVSWSPPE--RDHWNGVIQGYYVGYKETSTDKPFLFETVD 303
+ P PP ++ +T++++W+ + + Y V +K
Sbjct: 2 DLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNA-- 59
Query: 304 FSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCT 363
++ LK T Y V S T E P PP+D T
Sbjct: 60 ----NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVV 115
Query: 364 --TLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW 399
+TI V+W P ANG I GY + Y
Sbjct: 116 SKEGKPKTIIVNWQPPS--EANGKITGYIIYYSTDVNA 151
Score = 118 bits (298), Expect = 5e-31
Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 7/137 (5%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN--TLKVSWSPPERDH 276
Y ++ SS S T T E P+ PP + V + + T+ V+W PP
Sbjct: 76 LYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPS--E 133
Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
NG I GY + Y + + G + L T Y +QA N G
Sbjct: 134 ANGKITGYIIYYSTDVNAEIHDWVIEPVV---GNRLTHQIQELTLDTPYYFKIQARNSKG 190
Query: 337 PGPMSEEVKQYTAEGTP 353
GPMSE V+ T +
Sbjct: 191 MGPMSEAVQFRTPKAHH 207
Score = 46.7 bits (111), Expect = 5e-06
Identities = 23/162 (14%), Positives = 42/162 (25%), Gaps = 43/162 (26%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLS-----PSNRVPAR 185
K + ++ ++Y +GLK Y F V + S + P+ P
Sbjct: 53 NTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPT-SPPKD 111
Query: 186 IASFNDNFTAT----------------------YTEDIKLP---CLTVGVPAPEIIW--- 217
+ + Y+ D+ + V +
Sbjct: 112 VTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQ 171
Query: 218 -----KTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTH 254
Y+ +I A N G S+ V T + H
Sbjct: 172 ELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPK----AHHHH 209
Score = 43.3 bits (102), Expect = 7e-05
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
NG ++ I + ++ + + + ++T++ L Y F + A + G
Sbjct: 134 ANGKITGYIIYYSTDVNA--EIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGM 191
Query: 168 GQPSKNVT 175
G S+ V
Sbjct: 192 GPMSEAVQ 199
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 126 bits (318), Expect = 2e-33
Identities = 36/167 (21%), Positives = 57/167 (34%), Gaps = 9/167 (5%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
Y +++ A G S V+ T +E PS P + ++SW+ P N
Sbjct: 70 DYEMKVCAYGAQGEGPYSSLVSCRTHQEVPS-EPGRLAFNVVSSTVTQLSWAEPAET--N 126
Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG 338
G I Y V Y + D + + K L + +L+ Y V+A N G G
Sbjct: 127 GEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWG 186
Query: 339 PMSEE-VKQYTAEGTPEQPPQDNTCTTLTSQ-----TIRVSWVSPPL 379
P E + T P P + +Q + + L
Sbjct: 187 PEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDYDSFLMYSDDVL 233
Score = 124 bits (312), Expect = 1e-32
Identities = 37/153 (24%), Positives = 55/153 (35%), Gaps = 14/153 (9%)
Query: 245 EEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDF 304
G P + +A + +W PP +G GY V Y +
Sbjct: 2 SHMDLGAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHLL--- 53
Query: 305 SKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTT 364
+ K + L++L Y Y + V A G GP S V T + P P
Sbjct: 54 ---DSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP-SEPGRLAFNV 109
Query: 365 LTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
++S ++SW P NG I Y+V YG +
Sbjct: 110 VSSTVTQLSWAEPA--ETNGEITAYEVCYGLVN 140
Score = 53.2 bits (128), Expect = 4e-08
Identities = 34/208 (16%), Positives = 62/208 (29%), Gaps = 48/208 (23%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
P+G +K +GDS E ++ + S+ + E + L +Y V A GE
Sbjct: 29 PSGKPMGYRVKYWIQGDS-----ESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGE 83
Query: 168 GQPSKNVTLSPSNRVPARIASFN-DNFTAT------------------Y---------TE 199
G S V+ VP+ + ++T Y
Sbjct: 84 GPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDN 143
Query: 200 DIKLPCLTVGVPAPEIIW---------KTYHIRIVAENEIGSSEPSD-TVTILTAEEAPS 249
P V V P+ + Y + A N G + + + T + P
Sbjct: 144 RPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPM 203
Query: 250 GPPTH-----IKVEATDQNTLKVSWSPP 272
P + ++ + + +S
Sbjct: 204 SIPIIPDIPIVDAQSGEDYDSFLMYSDD 231
Score = 49.0 bits (117), Expect = 9e-07
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 350 EGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
PQ+ S+ I +W+ P +G GY+V Y
Sbjct: 2 SHMDLGAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGD 45
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 122 bits (308), Expect = 2e-33
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Query: 236 SDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDK 295
S + + E+ P P +++V + +V W P G +QGY + Y +T +
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61
Query: 296 PFLFETVDFSKE--EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
++ +G + H L L+ ++ Y++ V+ +N G GP S + T EG+
Sbjct: 62 KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSG 121
Query: 354 EQPP 357
P
Sbjct: 122 --PS 123
Score = 67.8 bits (166), Expect = 5e-14
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 341 SEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
S ++ E P P + + S V W PL + G ++GY++ Y + +
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQS 59
Score = 35.5 bits (82), Expect = 0.011
Identities = 11/58 (18%), Positives = 15/58 (25%)
Query: 118 KRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVT 175
K E K + GL+ +Y V GEG S +
Sbjct: 56 KTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRV 113
Score = 34.7 bits (80), Expect = 0.019
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPS 249
Y + + N G S T E +
Sbjct: 92 HYTLNVRVVNGKGEGPASPDRVFNTPEGSGP 122
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 120 bits (304), Expect = 7e-33
Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 6/123 (4%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S V T+E+APS P ++ T+ V W PE NG IQGY V Y
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPE--EPNGQIQGYRVYYTM 58
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
T + + T+ +L YSV V A +G GP+S +++ T
Sbjct: 59 DPTQHVNNWMKHN----VADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQT 114
Query: 351 GTP 353
G+
Sbjct: 115 GSG 117
Score = 69.0 bits (169), Expect = 2e-14
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
G S V T+E P P+D L+S TI V W P NG I+GY+V Y
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPE--EPNGQIQGYRVYYTM 58
Query: 396 SDTW 399
T
Sbjct: 59 DPTQ 62
Score = 33.1 bits (76), Expect = 0.063
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
PNG + + T + + + L ++ Y V A T+IG+
Sbjct: 45 PNGQIQGYRVYYTMDPTQHV---NNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGD 101
Query: 168 GQPSKNVT 175
G S ++
Sbjct: 102 GPLSSDIQ 109
Score = 32.8 bits (75), Expect = 0.090
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
TY ++++A IG S + ++T +
Sbjct: 88 TYSVKVLAFTSIGDGPLSSDIQVITQTGSG 117
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 131 bits (330), Expect = 9e-33
Identities = 60/473 (12%), Positives = 113/473 (23%), Gaps = 137/473 (28%)
Query: 66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDS 125
+P L C K + W+ + + +T++ E
Sbjct: 104 EKPKNLSCIVNEGKKMRCEWDGGR---ETHLETNFTLKSE----------------WATH 144
Query: 126 ALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG---------------QP 170
C+ K +S N +V A +G+ P
Sbjct: 145 KFADCKAKRDTPTS---CTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNP 201
Query: 171 SKNVTLSPSNRVPARI----------------------ASFNDNFTATYTEDIKLPCLTV 208
N+++ S + + + ++ ED +
Sbjct: 202 PHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSF 261
Query: 209 GVPAPEIIWKTYHIRIVAENEIGS---SEPSDTVTILTAEEAPSGPPTHIK----VEATD 261
V + + Y RI E G S+ S+ + +T E+ PS P+
Sbjct: 262 TVQDLKP-FTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQG 320
Query: 262 QNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKT 321
T+++ W NG I Y V + + + L+ T
Sbjct: 321 YRTVQLVWKTLPPFEANGKILDYEVTLTRWKS-----------HLQNYTVNATKLTVNLT 369
Query: 322 YTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLIT 381
+Y + N +G + A P + + V W + P +
Sbjct: 370 NDRYLATLTVRNLVGKSDAAVLT--IPACDFQATHPVMDLKAFPKDNMLWVEW-TTPRES 426
Query: 382 ANGVIKGYKVVY-------------------------------------------GPSDT 398
I + V+ G ++
Sbjct: 427 VKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPES 486
Query: 399 WY--------GDPKTDICTDIRA-----SWVSPPLITANGVIKGYKVVYGPSD 438
T + W P+ NG I+ Y + Y
Sbjct: 487 IKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTII 539
Score = 93.5 bits (232), Expect = 3e-20
Identities = 37/233 (15%), Positives = 66/233 (28%), Gaps = 40/233 (17%)
Query: 143 TYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTAT------ 196
+ + Y+ +T +G+ + + + +
Sbjct: 361 ATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEW 420
Query: 197 --------------YTEDIKLPCLT-----VGVPAPEII------WKTYHIRIVAENEIG 231
K PC+T G + K Y I + G
Sbjct: 421 TTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADG 480
Query: 232 SSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKET 291
P ++ + PS PT ++ + +N + W D NG I+ Y + Y+
Sbjct: 481 PGSPE-SIKAYLKQAPPSKGPT-VRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTI 538
Query: 292 STDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV 344
++ V+ TLSSL + T Y V + A G E
Sbjct: 539 IGNE----TAVNVD---SSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 584
Score = 72.7 bits (178), Expect = 1e-13
Identities = 23/182 (12%), Positives = 54/182 (29%), Gaps = 17/182 (9%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
I+ ++ + T+ P P ++ + ++ W
Sbjct: 77 QLTCNILTFGQLEQNVYGITII----SGLPPEKPKNLSCIVNEGKKMRCEWDGG---RET 129
Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG 338
+ + + + + D S + V V+A N LG
Sbjct: 130 HLETNFTLKSEWATHKFADCKAKRD-----TPTSCTVDYSTVYFVNIEVWVEAENALGKV 184
Query: 339 PMSEEVKQYTAEGTPEQPPQDNT--CTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPS 396
S+ + PP + + + S ++++W +P + + +I Y + Y
Sbjct: 185 T-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSI--KSVIILKYNIQYRTK 241
Query: 397 DT 398
D
Sbjct: 242 DA 243
Score = 40.0 bits (93), Expect = 0.002
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 133 KSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSK 172
+ + S Y S L Y+ + A T+ G +
Sbjct: 543 TAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPE 582
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 122 bits (309), Expect = 1e-32
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 9/134 (6%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
+Y+ R++AENE G P++T + A E P PP I + +N++ +SW PE D
Sbjct: 72 GCSYYFRVLAENEYGIGLPAETAESVKASERP-LPPGKITLMDVTRNSVSLSWEKPEHD- 129
Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
I GY V + +DK TV T++ L +YS V A N+ G
Sbjct: 130 GGSRILGYIVEMQTKGSDKWATCATVK-------VTEATITGLIQGEEYSFRVSAQNEKG 182
Query: 337 PGPMSEEVKQYTAE 350
+ A+
Sbjct: 183 ISDPRQLSVPVIAK 196
Score = 95.9 bits (239), Expect = 5e-23
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 12/158 (7%)
Query: 244 AEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVD 303
A + P GPP +KV+ + ++ ++W PP D I+ Y V +E++ + TV
Sbjct: 2 AMDTP-GPPQDLKVKEVTKTSVTLTWDPPLLDG-GSKIKNYIVEKRESTRKA---YSTVA 56
Query: 304 FSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCT 363
+ + + L+ Y V A N+ G G +E + A P PP T
Sbjct: 57 TN---CHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERP-LPPGKITLM 112
Query: 364 TLTSQTIRVSWVSPPLITANGVIKGYKVVY--GPSDTW 399
+T ++ +SW P I GY V SD W
Sbjct: 113 DVTRNSVSLSW-EKPEHDGGSRILGYIVEMQTKGSDKW 149
Score = 49.7 bits (119), Expect = 4e-07
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 31/140 (22%)
Query: 138 SSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPA-----RIASFNDN 192
+ + +++ L++ +Y F V A G G P++ ++ P + N
Sbjct: 58 NCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRN 117
Query: 193 -------------------FTATYTEDIKLPCLTVG-VPAPEIIWK------TYHIRIVA 226
+ T V E Y R+ A
Sbjct: 118 SVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSA 177
Query: 227 ENEIGSSEPSDTVTILTAEE 246
+NE G S+P + A++
Sbjct: 178 QNEKGISDPRQLSVPVIAKD 197
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 124 bits (313), Expect = 2e-32
Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 23/181 (12%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
Y + I A S+ S T P +++V + +L + W
Sbjct: 80 RYEVSISAVRGTNESDASSTQ-----FTTEIDAPKNLRVGSRTATSLDLEWDNS-----E 129
Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG 338
Q Y V Y + ++ V K G TL+ L T+Y V + A+
Sbjct: 130 AEAQEYKVVYSTLAGEQY---HEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQS 186
Query: 339 PMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
+ T P+D T + +I + W +G I Y++ + PS
Sbjct: 187 I-PATMNARTELD----SPRDLMVTASSETSISLIWTKA-----SGPIDHYRITFTPSSG 236
Query: 399 W 399
Sbjct: 237 I 237
Score = 97.2 bits (242), Expect = 1e-22
Identities = 27/167 (16%), Positives = 50/167 (29%), Gaps = 24/167 (14%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GS S + PT I V V W+PP + + Y
Sbjct: 1 GSPGISGGGGGIPV----IDGPTQILVRDVSDTVAFVEWTPP-----RAKVDFILLKYGL 51
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
+ + ++ +L+ ++Y V + A+ S T
Sbjct: 52 VGGEGGKTTFRLQ-----PPLSQYSVQALRPGSRYEVSISAVRGTNESDASS-----TQF 101
Query: 351 GTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
T P++ + T+ ++ + W + + YKVVY
Sbjct: 102 TTEIDAPKNLRVGSRTATSLDLEWDNSE-----AEAQEYKVVYSTLA 143
Score = 82.5 bits (204), Expect = 9e-18
Identities = 36/243 (14%), Positives = 69/243 (28%), Gaps = 45/243 (18%)
Query: 133 KSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS-----------KNVTLSPSN- 180
+ ++ Y L+ Y ++A E S KN+ +
Sbjct: 59 TTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTA 118
Query: 181 --------RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEII-------WKTYHIRIV 225
A + ++ E + G+ Y + I
Sbjct: 119 TSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGIS 178
Query: 226 AENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYY 285
A S P+ T+ T P + V A+ + ++ + W+ +G I Y
Sbjct: 179 AVMNSKQSIPA-TMNART----ELDSPRDLMVTASSETSISLIWTKA-----SGPIDHYR 228
Query: 286 VGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVK 345
+ + +S TV TL+ L+ +Y + + A S V
Sbjct: 229 ITFTPSSGISS--EVTVP-----RDRTSYTLTDLEPGAEYIISITAERGRQQSLES-TVD 280
Query: 346 QYT 348
+T
Sbjct: 281 AFT 283
Score = 34.0 bits (78), Expect = 0.087
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS 171
+ + +Y + L+ YI +TA + S
Sbjct: 237 ISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLES 277
Score = 30.5 bits (69), Expect = 1.2
Identities = 20/162 (12%), Positives = 42/162 (25%), Gaps = 32/162 (19%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
+ + + + + + L Y ++A N +
Sbjct: 128 SEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTT--KTTLTDLVPGTEYGVGISAVMNSKQ 185
Query: 168 GQPS-----------KNVTLSPSN---------RVPARIASF------NDNFTATYTEDI 201
P+ +++ ++ S+ + I + + ++ T
Sbjct: 186 SIPATMNARTELDSPRDLMVTASSETSISLIWTKASGPIDHYRITFTPSSGISSEVTVPR 245
Query: 202 KLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILT 243
T+ P Y I I AE S S TV T
Sbjct: 246 DRTSYTLTDLEPG---AEYIISITAERGRQQSLES-TVDAFT 283
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 122 bits (307), Expect = 3e-31
Identities = 52/332 (15%), Positives = 104/332 (31%), Gaps = 24/332 (7%)
Query: 46 LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAK-GEKPIGILWNMNNKRLDPKSDNRYTIRE 104
L P E+ TS G+ L C E + W +
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRW----- 55
Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTN 164
G+ L ++ + DS ++C + + + + + + + S
Sbjct: 56 ----AGMGRRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDVPPEEPQLSCFRKSPLSNV 111
Query: 165 IGEGQPSKNVTLSPSNRVPARIASFNDNFTATYT--EDIKLPCLTVGVPAPEIIWKTYHI 222
+ E P +L+ + R + + + + PE Y +
Sbjct: 112 VCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIV 171
Query: 223 RIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN--TLKVSWSPPERDHWNGV 280
+ + +GS S T T PP +I V A +N L V+W P + +
Sbjct: 172 SMCVASSVGSKF-SKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFY 230
Query: 281 IQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPM 340
+ + Y+ + + D +HH + + ++ V ++A + G G
Sbjct: 231 RLRFELRYRAERSKTFTTWMVKD------LQHHCVIHDAWSGLRHVVQLRAQEEFGQGEW 284
Query: 341 SE---EVKQYTAEGTPEQPPQDNTCTTLTSQT 369
SE E + P ++ T + + T
Sbjct: 285 SEWSPEAMGTPWTESRSPPAENEVSTPMQALT 316
Score = 53.7 bits (128), Expect = 6e-08
Identities = 34/253 (13%), Positives = 72/253 (28%), Gaps = 36/253 (14%)
Query: 176 LSPSNRVPARIASFNDNFTATYTEDIKLPCLTV-GVPAPEIIWKTYHIRIVAENEIGSSE 234
L+P R PA+ + T+ + + L C V + W + +
Sbjct: 1 LAPR-RCPAQEVA-RGVLTSLPGDSVTLTCPGVEPEDNATVHWV-LRKPAAGSHPSRWAG 57
Query: 235 PSDTVTILTAEEAPSG-----------------------PPTHIKVEATDQNTLKVSWSP 271
+ + + + SG P + + + W P
Sbjct: 58 MGRRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGP 117
Query: 272 PERDHWNGVIQGYYVGYKETSTDKPFLF-ETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ 330
+ + ++ F E +S+E K + Y V +
Sbjct: 118 R---STPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMC 174
Query: 331 ALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTL--TSQTIRVSWVSPPLITANGVIKG 388
+ +G S+ PP + T T + + + V+W P ++
Sbjct: 175 VASSVGSKF-SKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLR 233
Query: 389 YKVVYGP--SDTW 399
+++ Y S T+
Sbjct: 234 FELRYRAERSKTF 246
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 120 bits (303), Expect = 9e-31
Identities = 56/343 (16%), Positives = 105/343 (30%), Gaps = 79/343 (23%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
+ P F+ +LRN R + L C+ G + W K + +Y I+E
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIA-DGLKYRIQEFKGG 60
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
L I D+ ++ A+ G
Sbjct: 61 YH---QLIIASVTDDDATVYQVR-----------------------------ATNQGGSV 88
Query: 169 QPSKNVTL-SPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------T 219
+ ++ + P+ + A E + + G P P I W+
Sbjct: 89 SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN 148
Query: 220 YHIRI-------------------------VAENEIGSSEPSDTVTILTAEEAPSGPPTH 254
H ++ A+N G + + + + + P PP
Sbjct: 149 GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA---DVP-DPPRG 204
Query: 255 IKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHL 314
+KV ++++ ++W+ P D I Y V T+ ++ + V + +E
Sbjct: 205 VKVSDVSRDSVNLTWTEPASDG-GSKITNYIVEKCATTAER---WLRVG----QARETRY 256
Query: 315 TLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
T+ +L T Y V A NK G SE + + +
Sbjct: 257 TVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAM 299
Score = 41.3 bits (97), Expect = 5e-04
Identities = 36/266 (13%), Positives = 69/266 (25%), Gaps = 91/266 (34%)
Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIWK-----------TYHIRI---------------- 224
N Y + L C G P P + W Y I+
Sbjct: 13 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDD 72
Query: 225 -------VAENEIGSSEPSDTVTILTAE--------------EAPSGPPTHIKVEATDQN 263
A N+ GS + ++ + A G IK+ + +
Sbjct: 73 DATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKP 132
Query: 264 TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYT 323
++W K + + + +
Sbjct: 133 DPVITW------------------QKG---QDL-IDNNGHYQVIVTRSFTSLVFPNGVER 170
Query: 324 Q----YSVVVQALNKLGPGPMSEEVKQYTAE----GTPEQPPQDNTCTTLTSQTIRVSWV 375
+ Y V + N+ G + Q T E P+ PP+ + ++ ++ ++W
Sbjct: 171 KDAGFYVVCAK--NRFG-------IDQKTVELDVADVPD-PPRGVKVSDVSRDSVNLTW- 219
Query: 376 SPPLITANGVIKGYKVVY--GPSDTW 399
+ P I Y V ++ W
Sbjct: 220 TEPASDGGSKITNYIVEKCATTAERW 245
Score = 29.7 bits (67), Expect = 2.6
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
N Y + L C G P P + W
Sbjct: 13 NLNVRYQSNATLVCKVTGHPKPIVKWY 39
Score = 28.2 bits (63), Expect = 6.1
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ A E + + G P P I W+
Sbjct: 102 IHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQ 139
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 113 bits (285), Expect = 3e-30
Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
+ P P +A ++ T+ + W + N I G+Y+ Y+ T +D ++
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD 62
Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQP 356
EG + ++S L+ T Y + +Q N+ G S + T +
Sbjct: 63 MV---EGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPSS 113
Score = 57.1 bits (138), Expect = 2e-10
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 347 YTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW 399
+ P P + TI + W+ P N I G+ + Y P+D+
Sbjct: 2 SSGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSD 54
Score = 35.5 bits (82), Expect = 0.007
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGP 251
+Y I++ NE G SE S+ + T +
Sbjct: 79 ETSYDIKMQCFNEGGESEFSNVMICETKARSGPSS 113
Score = 32.5 bits (74), Expect = 0.086
Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLS-PSNRVPA 184
+ K + + + S L+ + +Y + GE + S + + P+
Sbjct: 58 DYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPS 112
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 112 bits (282), Expect = 5e-30
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
+ PSG P ++ V +T +++W PP NG I Y V +++ ++ + T
Sbjct: 3 SGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITT 62
Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
+ TL+ LK T Y + V+A G GP+S ++ T
Sbjct: 63 --------DTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 61.6 bits (150), Expect = 4e-12
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 347 YTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW 399
+ P PQ+ T LT+ T ++W P L NG I Y VV+ ++
Sbjct: 2 SSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQ 54
Score = 31.9 bits (73), Expect = 0.12
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 133 KSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVT 175
+ + + + +GLK Y V A T+ G G S ++
Sbjct: 55 QELQNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQ 97
Score = 27.7 bits (62), Expect = 3.9
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILT 243
TY I++ A GS S ++ T
Sbjct: 74 DTTYDIKVRAWTSKGSGPLSPSIQSRT 100
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 112 bits (283), Expect = 6e-30
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 10/128 (7%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S I +A++APS PT + V+ + + V W +++ Y + Y
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHV----LEKIVESYQIRYWA 56
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
+ E + + +E+ L +L TQY + V A N G GP S+ ++ +T +
Sbjct: 57 AHDKE----EAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKK 112
Query: 351 GTPEQPPQ 358
+ P
Sbjct: 113 ASG--PSS 118
Score = 71.6 bits (176), Expect = 2e-15
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
G S +A+ P + P + L+S I V W +++ Y++ Y
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVL----EKIVESYQIRYWA 56
Query: 396 SDTW 399
+
Sbjct: 57 AHDK 60
Score = 35.0 bits (81), Expect = 0.014
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
++ I+ D +++SQ+ + L Y V A + G
Sbjct: 43 LEKIVESYQIRYWAAHDKEE---AANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGC 99
Query: 168 GQPSKNVT 175
G PS +
Sbjct: 100 GPPSDMIE 107
Score = 33.5 bits (77), Expect = 0.043
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
Y I + A N G PSD + T + + P +
Sbjct: 86 QYFIEVGACNSAGCGPPSDMIEAFTKKASG--PSS 118
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 110 bits (277), Expect = 4e-29
Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 5/124 (4%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNT-LKVSWSPPERDHWNGVIQGYYVGYK 289
GSS S + T E APS P ++ V + + + + W P +G + GY + +
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60
Query: 290 ETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA 349
S + +S +V + A+ + G GP S+ VK +
Sbjct: 61 WQSAG----ISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIP 116
Query: 350 EGTP 353
+
Sbjct: 117 AHSG 120
Score = 68.3 bits (167), Expect = 3e-14
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCT-TLTSQTIRVSWVSPPLITANGVIKGYKVVYG 394
G S + T EG P P + T +S + + W+ PP +G + GY++ +
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60
Query: 395 PSDTWY 400
Sbjct: 61 WQSAGI 66
Score = 34.0 bits (78), Expect = 0.035
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 134 SQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLS-PSNRVP 183
+++ S + A T G G S V + P++ P
Sbjct: 71 LEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHSGP 121
Score = 30.5 bits (69), Expect = 0.46
Identities = 11/34 (32%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEE-APS 249
T +RI A G SD V I PS
Sbjct: 89 NATCTVRIAAVTRGGVGPFSDPVKIFIPAHSGPS 122
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 113 bits (284), Expect = 5e-29
Identities = 33/143 (23%), Positives = 48/143 (33%), Gaps = 13/143 (9%)
Query: 218 KTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHW 277
TY +R+ A N G E S T P D N++KV+ D
Sbjct: 79 TTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQ--DDG 136
Query: 278 NGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGP 337
I+ Y V Y+ S+ E + H+ L SL +Y V V A N+ G
Sbjct: 137 GSPIRHYLVRYRALSS------EWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGK 190
Query: 338 GPMSEEVKQYTAEGTPEQPPQDN 360
+ V + T +
Sbjct: 191 SKAAHFVFR-----TAAAHHHHH 208
Score = 94.9 bits (236), Expect = 1e-22
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 9/158 (5%)
Query: 242 LTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGV-IQGYYVGYKETSTDKPFLFE 300
L + PS P+ +VE +T +V + PE GV I Y ++ +
Sbjct: 3 LAQADTPS-SPSIDQVEPYS-STAQVQFDEPEAT--GGVPILKYKAEWRAVGEEVWH--S 56
Query: 301 TVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDN 360
+KE E +T+ LK T Y+V + ALN G G +S + T P+
Sbjct: 57 KWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLE 116
Query: 361 TCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
+I+V+ + I+ Y V Y +
Sbjct: 117 GQMGEDGNSIKVNLIKQD--DGGSPIRHYLVRYRALSS 152
Score = 47.9 bits (114), Expect = 2e-06
Identities = 23/157 (14%), Positives = 43/157 (27%), Gaps = 32/157 (20%)
Query: 122 RGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNR 181
++ + K +S + GLK + Y + A G G+ S
Sbjct: 48 AVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPV 107
Query: 182 VPA------RIASFNDN------------------FTATYTEDIK--LPCLTVGVPAPEI 215
+ N + Y P + + + +
Sbjct: 108 REPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHV 167
Query: 216 IWK------TYHIRIVAENEIGSSEPSDTVTILTAEE 246
+ K Y + +VAEN+ G S+ + V A
Sbjct: 168 MLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAAH 204
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 120 bits (300), Expect = 9e-29
Identities = 35/242 (14%), Positives = 66/242 (27%), Gaps = 31/242 (12%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATD-------QNTLKVSW 269
+ Y R+ A N G+ + + + PS PP + + T+ + W
Sbjct: 233 SRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVW 292
Query: 270 SPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE-EGKEHHLTLSSLKTYTQYSVV 328
PE + + Y V + + K + K +G ++ + L L+ Y V
Sbjct: 293 DLPE--EPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVE 350
Query: 329 VQALNKLGPGPMSEEVKQ--YTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVI 386
+QA+ G + +T+ Q QT P
Sbjct: 351 LQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPT------- 403
Query: 387 KGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGS 446
D ++ W + + Y V + P +
Sbjct: 404 --------RPLEVGAPFYQDGQLQVKVYWKKTE----DPTVNRYHVRWFPEACAHNRTTG 451
Query: 447 FR 448
Sbjct: 452 SE 453
Score = 97.7 bits (242), Expect = 1e-21
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 12/172 (6%)
Query: 235 PSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTD 294
+ V + P P ++ L+V WS + Y V +
Sbjct: 147 HTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNI--SIEPVIYVVQRRWNYGI 204
Query: 295 KPFLFETVDFSK-EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
P + + + + + L+ ++ Y V A+N G + K + + P
Sbjct: 205 HPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDP 264
Query: 354 EQPPQ-------DNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
PP ++T + S T+ + W P + + YKV + +
Sbjct: 265 SAPPAPANLRLANSTVNSDGSVTVTIVWDLPE--EPDIPVHHYKVFWSWMVS 314
Score = 76.5 bits (187), Expect = 7e-15
Identities = 36/337 (10%), Positives = 81/337 (24%), Gaps = 66/337 (19%)
Query: 115 LSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNV 174
+ S + T + + + Q + L+ +Y+ + A T G+ +
Sbjct: 307 VFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLK--- 363
Query: 175 TLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSE 234
A + T + ++ +
Sbjct: 364 ------------------------------------SAKVSLHFTSTHATNNKEQLVKTR 387
Query: 235 PSDTVTILTAEEAPSGPPTHIKVEATDQNTLK--VSWSPPERDHWNGVIQGYYVGYKETS 292
T L + P + L+ V W E + + Y+V + +
Sbjct: 388 KGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTE----DPTVNRYHVRWFPEA 443
Query: 293 TDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGT 352
+ S E+++ L L +Y V VQ +
Sbjct: 444 CAHNRT-TGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSA 502
Query: 353 PEQP-PQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDI 411
+ + C + P ++A+ +++ D+
Sbjct: 503 LKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQ------------------DVNITG 544
Query: 412 RASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFR 448
SW + G++V + T
Sbjct: 545 HFSW-KMAKANLYQPMTGFQVTWAEVTTESRQNSLPN 580
Score = 73.5 bits (179), Expect = 7e-14
Identities = 35/275 (12%), Positives = 74/275 (26%), Gaps = 52/275 (18%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
+ ++ ++ + T ++ + + L Y V
Sbjct: 428 EDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSH 487
Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAE 227
+ +P PC + + + I
Sbjct: 488 SKAEAVFFTTP-------------------------PCSALKGKSHKPI----------- 511
Query: 228 NEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVG 287
+ +L+ A + + T SW + + + G+ V
Sbjct: 512 -----GCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKAN-LYQPMTGFQVT 565
Query: 288 YKETSTDKPFLFETVDFSKE----EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE 343
+ E +T+ + + LT+ +L+ T Y + VQ L G GP + +
Sbjct: 566 WAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIK 625
Query: 344 VKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPP 378
+ TPE PP + L + + P
Sbjct: 626 TFR-----TPELPPSSAHRSHLKHRHPH-HYKPSP 654
Score = 38.4 bits (88), Expect = 0.006
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 3/98 (3%)
Query: 120 TERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPS 179
R +S + +SQ + S L+ Y V T GEG P+ T
Sbjct: 572 ESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEG-PATIKTFRTP 630
Query: 180 NRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
P+ + + K G P P +
Sbjct: 631 ELPPSSAHRS--HLKHRHPHHYKPSPERYGKPIPNPLL 666
Score = 38.0 bits (87), Expect = 0.009
Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 9/80 (11%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGP-PTHIKVEATDQNTLKVSWSPPERD 275
Y + + G + T T E PS +H+K PER
Sbjct: 604 STLYRLEVQVLTPGGEGPAT-IKTFRTPELPPSSAHRSHLK-----HRHPHHYKPSPER- 656
Query: 276 HWNGVIQGYYVGYKETSTDK 295
+ I +G T T
Sbjct: 657 -YGKPIPNPLLGLDSTRTGH 675
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 105 bits (265), Expect = 2e-27
Identities = 39/127 (30%), Positives = 54/127 (42%), Gaps = 13/127 (10%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S V + P P +++ A ++ V+W P NG IQ Y + Y E
Sbjct: 1 GSSGSSGRVETQPEVQLPG-PAPNLRAYAASPTSITVTWETPVSG--NGEIQNYKLYYME 57
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
TDK + H T++ LK YT+YS V A NK GPG + +V T
Sbjct: 58 KGTDKEQDVDV--------SSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLS 109
Query: 351 GTPEQPP 357
+ P
Sbjct: 110 DSG--PS 114
Score = 59.7 bits (145), Expect = 3e-11
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
G S V+ P P + + +I V+W P+ + NG I+ YK+ Y
Sbjct: 1 GSSGSSGRVETQPEVQLPG-PAPNLRAYAASPTSITVTW-ETPV-SGNGEIQNYKLYYME 57
Query: 396 SDTW 399
T
Sbjct: 58 KGTD 61
Score = 46.6 bits (111), Expect = 1e-06
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
NG + + + E+G K Q + +Y +GLKK Y F V A G
Sbjct: 44 GNGEIQNYKLYYMEKGTD-------KEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGP 96
Query: 168 GQPSKNVT 175
G + +V
Sbjct: 97 GVSTPDVA 104
Score = 40.4 bits (95), Expect = 2e-04
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
+ Y R+VA N+ G + V + T ++ P +
Sbjct: 81 YTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSG--PSS 115
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 104 bits (260), Expect = 8e-27
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 11/128 (8%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S + T E+ P P H+ +LKVSW P NG++ GY + ++E
Sbjct: 1 GSSGSSGPQLVRTHEDVPG-PVGHLSFSEILDTSLKVSWQEPG--EKNGILTGYRISWEE 57
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
+ + + ++ L T Y++ V A+ G G +S +
Sbjct: 58 YNRTNTRVTHYLP-----NVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST---ISS 109
Query: 351 GTPEQPPQ 358
G P P
Sbjct: 110 GVPPSGPS 117
Score = 58.2 bits (141), Expect = 1e-10
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
G S T E P P + + + +++VSW P NG++ GY++ +
Sbjct: 1 GSSGSSGPQLVRTHEDVPG-PVGHLSFSEILDTSLKVSW-QEPGEK-NGILTGYRISWEE 57
Query: 396 SD 397
+
Sbjct: 58 YN 59
Score = 47.0 bits (112), Expect = 8e-07
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
NG+L+ I E + + + + + Y +GL Y V A T+ G+
Sbjct: 44 KNGILTGYRISWEEYNRTN----TRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQ 99
Query: 168 GQPSKNVTLS 177
GQ S + S
Sbjct: 100 GQVSASTISS 109
Score = 32.0 bits (73), Expect = 0.14
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
TY I + A G + S + + P P+
Sbjct: 86 TYTIEVAAMTSKGQGQVSAST---ISSGVPPSGPS 117
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 103 bits (259), Expect = 1e-26
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 12/123 (9%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S + ++T P P + K E + ++ +SW+PP + I Y + YK+
Sbjct: 1 GSSGSSGDIQVITQTGVPG-QPLNFKAEPESETSILLSWTPPR----SDTIANYELVYKD 55
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
+ + + L LK + Y + A + G G + E+ T +
Sbjct: 56 GEHGE---EQRITIEPGT----SYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQ 108
Query: 351 GTP 353
+
Sbjct: 109 SSG 111
Score = 60.8 bits (148), Expect = 1e-11
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
G S +++ T G P P + + +I +SW P + I Y++VY
Sbjct: 1 GSSGSSGDIQVITQTGVPG-QPLNFKAEPESETSILLSWTPPR----SDTIANYELVYKD 55
Query: 396 SDT 398
+
Sbjct: 56 GEH 58
Score = 41.9 bits (99), Expect = 5e-05
Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
+ +++ + + + + +Y GLK Y F + A + G
Sbjct: 42 RSDTIANYELVYKDGEHGE------EQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGL 95
Query: 168 GQPSKNVT 175
G + ++
Sbjct: 96 GASTAEIS 103
Score = 35.8 bits (83), Expect = 0.006
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
Y+ R+ A + G + ++ T + +
Sbjct: 82 LYYFRLAARSPQGLGASTAEISARTMQSSG 111
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 105 bits (264), Expect = 2e-26
Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 20/174 (11%)
Query: 225 VAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGY 284
+ + S V + E P PT + +++ + W+P + I GY
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMEVP--QPTDLSFVDITDSSIGLRWTPLN----SSTIIGY 54
Query: 285 YVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV 344
+ P + VD + T++ L+ Y + V + G +
Sbjct: 55 RITVVAAGEGIPIFEDFVD-----SSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTT-- 107
Query: 345 KQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
+ T PP D T + T+RV+W PP + + + V Y P
Sbjct: 108 ---LTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKN 154
Score = 89.1 bits (221), Expect = 1e-20
Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 15/128 (11%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
Y I + G S P+ T+T T PPT ++ +T++V+W+PP +
Sbjct: 89 DYDISVYTVKNGGESTPT-TLTQQT----AVPPPTDLRFTNIGPDTMRVTWAPPP----S 139
Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG 338
+ + V Y ++ ++ ++ + L++L T+Y V V ++ +
Sbjct: 140 IDLTNFLVRYSPVKNEEDVAELSIS-----PSDNAVVLTNLLPGTEYVVSVSSVYEQHES 194
Query: 339 -PMSEEVK 345
P+ K
Sbjct: 195 TPLRGRQK 202
Score = 37.1 bits (86), Expect = 0.007
Identities = 23/162 (14%), Positives = 46/162 (28%), Gaps = 31/162 (19%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
+ + I G+ I + S Y +GL+ +Y V N GE
Sbjct: 47 NSSTIIGYRITVVAAGEGI----PIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGE 102
Query: 168 GQPS-----------KNVTLSPSNRVPARI------ASFNDNFTATYTE---DIKLPCLT 207
P+ ++ + R+ + NF Y+ + + L+
Sbjct: 103 STPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELS 162
Query: 208 VGVPAPEII------WKTYHIRIVAENEIGSSEPSDTVTILT 243
+ ++ Y + + + E S P T
Sbjct: 163 ISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL-RGRQKT 203
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 101 bits (254), Expect = 3e-26
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
P P EA + + W+ + N IQG+Y+ Y+ T +D ++
Sbjct: 3 TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVV-- 60
Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
EG + + L+ T Y + +Q N+ G S + T
Sbjct: 61 -EGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
Score = 59.7 bits (145), Expect = 2e-11
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 352 TPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW 399
TP P ++ I + W P N I+G+ + Y P+D+
Sbjct: 3 TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSD 50
Score = 34.7 bits (80), Expect = 0.011
Identities = 6/45 (13%), Positives = 16/45 (35%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVT 175
+ K + + + L+ + +Y + GE + S +
Sbjct: 54 DYKRDVVEGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMI 98
Score = 30.8 bits (70), Expect = 0.30
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILT 243
+Y I++ NE G SE S+ + T
Sbjct: 75 ETSYDIKMQCFNEGGESEFSNVMICET 101
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 102 bits (257), Expect = 3e-26
Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 10/135 (7%)
Query: 224 IVAENEIGSSEPS-DTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQ 282
+ IG PS + T ++ P PP I ++++ W PP NG+I
Sbjct: 3 SGSSGRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQPPAAP--NGIIL 59
Query: 283 GYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE 342
Y + ++ +T T T + LK + Y + A + G G +E
Sbjct: 60 AYQITHRLNTTTA----NTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAE 115
Query: 343 EVKQYTAEGTPEQPP 357
+ T + P
Sbjct: 116 ALVVTTEK--RSGPS 128
Score = 57.8 bits (140), Expect = 2e-10
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 329 VQALNKLGPG-PMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIK 387
+ ++G G P + + T + P PP + + ++R+ W PP NG+I
Sbjct: 3 SGSSGRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIW-QPPA-APNGIIL 59
Query: 388 GYKVVYGPSDT 398
Y++ + + T
Sbjct: 60 AYQITHRLNTT 70
Score = 50.5 bits (121), Expect = 7e-08
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
PNG++ I +A + ++ Y A+GLK + Y+F +TA T G
Sbjct: 54 PNGIILAYQITHRLNTTTAN---TATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGW 110
Query: 168 GQPSKNVTLSPSNRVP 183
G+ ++ + ++ R
Sbjct: 111 GEAAEALVVTTEKRSG 126
Score = 35.8 bits (83), Expect = 0.009
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
Y RI A+ G E ++ + + T + SGP +
Sbjct: 95 ESVYLFRITAQTRKGWGEAAEALVVTTEK--RSGPSS 129
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 108 bits (271), Expect = 2e-25
Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 12/178 (6%)
Query: 236 SDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDK 295
+ P P ++ +++ W+PP+ D Y V ++ +
Sbjct: 321 APQDPASMPCTRPPSAPHYLTAVGMG-AKVELRWTPPQ-DSGGREDIVYSVTCEQCWPES 378
Query: 296 PFLFETVDFSKEE-----GKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
+ +T+S L+ + Y+ V+A N + S + +
Sbjct: 379 GECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVS 438
Query: 351 GTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP--SDTWYGDPKTD 406
P ++ ++ VSW PP + Y+V Y Y +T+
Sbjct: 439 INQ-TEPPKVRLEGRSTTSLSVSWSIPP--PQQSRVWKYEVTYRKKGDSNSYNVRRTE 493
Score = 108 bits (270), Expect = 3e-25
Identities = 46/312 (14%), Positives = 82/312 (26%), Gaps = 44/312 (14%)
Query: 61 QTSRRGEPSVLQCEAKGE--KPIGILWNMNNKRLDPKSDNRYTIRE-EILPNGVLSDLSI 117
GE + C GE PIG + + + +
Sbjct: 240 VVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECP 299
Query: 118 KRTERGDSALFTCEIKSQKISSQQMTYEASGLK---KKQNYIFYVTASTNIGEGQPSKNV 174
+ T +CE + + Q + + V
Sbjct: 300 EHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAK----------V 349
Query: 175 TLS---PSN---------RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEII------ 216
L P + V ++ G+ +
Sbjct: 350 ELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEP 409
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
Y + A N + S + + P +++E +L VSWS P
Sbjct: 410 HMNYTFTVEARNGVSGLVTSRSFRTASVSINQ-TEPPKVRLEGRSTTSLSVSWSIPPPQ- 467
Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
+ Y V Y++ ++ ++ + +TL L T Y V VQAL + G
Sbjct: 468 -QSRVWKYEVTYRKK-------GDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEG 519
Query: 337 PGPMSEEVKQYT 348
G S+ + T
Sbjct: 520 QGAGSKVHEFQT 531
Score = 41.7 bits (97), Expect = 6e-04
Identities = 19/143 (13%), Positives = 36/143 (25%), Gaps = 32/143 (22%)
Query: 138 SSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFN-DNFTAT 196
+ + S L+ NY F V A + S++ + + + + T
Sbjct: 396 GLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTT 455
Query: 197 ----------------------YTEDIKLPCLTV-GVPAPEII------WKTYHIRIVAE 227
Y + V + TY +++ A
Sbjct: 456 SLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQAL 515
Query: 228 NEIGSSEPSDTVTILTAEEAPSG 250
+ G S T +P G
Sbjct: 516 TQEGQGAGSKVHEFQTL--SPEG 536
Score = 40.5 bits (94), Expect = 0.001
Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 26/135 (19%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
S + + + + EP ++ E + + + W++ P
Sbjct: 424 SGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSI------PPP----------- 466
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
+ + ++GD ++ + L Y+ V A T G+
Sbjct: 467 QQSRVWKYEVTYRKKGD------SNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQ 520
Query: 168 GQPSKNV---TLSPS 179
G SK TLSP
Sbjct: 521 GAGSKVHEFQTLSPE 535
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 98.5 bits (246), Expect = 4e-25
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
++ + GP +++ +T ++ ++W PP NG +QGY + E ST K E
Sbjct: 2 SSGSSGPGPVENLQAVSTSPTSILITWEPPAYA--NGPVQGYRLFCTEVSTGKEQNIEV- 58
Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
L LK +T+YS+ A N+ GPG ++++ T + P
Sbjct: 59 -------DGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSG--PS 104
Score = 51.5 bits (124), Expect = 2e-08
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW 399
+ P P ++ + + +I ++W PP ANG ++GY++ T
Sbjct: 3 SGSSGPG-PVENLQAVSTSPTSILITW-EPPA-YANGPVQGYRLFCTEVSTG 51
Score = 44.6 bits (106), Expect = 5e-06
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
NG + + TE K Q I ++Y+ GLKK Y A G
Sbjct: 34 ANGPVQGYRLFCTEVSTG-------KEQNIEVDGLSYKLEGLKKFTEYSLRFLAYNRYGP 86
Query: 168 GQPSKNVT 175
G + ++T
Sbjct: 87 GVSTDDIT 94
Score = 40.3 bits (95), Expect = 1e-04
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
+ Y +R +A N G +D +T++T + SGP +
Sbjct: 71 FTEYSLRFLAYNRYGPGVSTDDITVVTLSD--SGPSS 105
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 96.7 bits (241), Expect = 4e-24
Identities = 30/126 (23%), Positives = 44/126 (34%), Gaps = 7/126 (5%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S T PS P + +K++W P D +G Y V Y +
Sbjct: 1 GSSGSSGEHAPATTGPLPS-APRDVVASLVSTRFIKLTWRTPASDP-HGDNLTYSVFYTK 58
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
+ + T E +T+ +L T Y V A NK G G S ++ T
Sbjct: 59 EGIARERVENTSH-----PGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQP 113
Query: 351 GTPEQP 356
+
Sbjct: 114 ESGPSS 119
Score = 49.3 bits (118), Expect = 2e-07
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
G S E T P P+D + ++++ I+++W P +G Y V Y
Sbjct: 1 GSSGSSGEHAPATTGPLP-SAPRDVVASLVSTRFIKLTW-RTPASDPHGDNLTYSVFYTK 58
Query: 396 SDTW 399
Sbjct: 59 EGIA 62
Score = 47.0 bits (112), Expect = 9e-07
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 218 KTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGP 251
Y R++A+N+ GS E S + + T E+
Sbjct: 86 TVYIFRVMAQNKHGSGESSAPLRVETQPESGPSS 119
Score = 40.9 bits (96), Expect = 1e-04
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 4/76 (5%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
P+G S+ T+ G + E +M L YIF V A G
Sbjct: 45 PHGDNLTYSVFYTKEGIAR----ERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGS 100
Query: 168 GQPSKNVTLSPSNRVP 183
G+ S + +
Sbjct: 101 GESSAPLRVETQPESG 116
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 96.4 bits (240), Expect = 4e-24
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 11/124 (8%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S TV + T + PS PP ++ ATD + ++W + + GY V Y+
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNATD-TKVLLNWEQVKAMENESEVTGYKVFYRT 59
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVK-QYTA 349
+S + + T L Y + V+A G G SE+++
Sbjct: 60 SSQNNVQVLNT---------NKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRIT 110
Query: 350 EGTP 353
P
Sbjct: 111 SSGP 114
Score = 65.6 bits (160), Expect = 3e-13
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
G S V T + P QPP N T + ++W + + GYKV Y
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPG-NVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRT 59
Query: 396 SD 397
S
Sbjct: 60 SS 61
Score = 31.3 bits (71), Expect = 0.23
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 136 KISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLS 177
++ + T L K++YI V A+T+ G+G S+ + +
Sbjct: 66 QVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIP 107
Score = 31.0 bits (70), Expect = 0.33
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSG 250
+ Y I + A + G S+ + I +
Sbjct: 82 KEDYIIEVKATTDGGDGTSSEQIRIPRITSSGPS 115
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 96.8 bits (241), Expect = 4e-24
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 16/132 (12%)
Query: 228 NEIGSSEPSDTVTILTAE-----EAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQ 282
+ S +D ++ T E P+ + V ++ VSW+PPE + N V++
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLV-TSIVVSWTPPE--NQNIVVR 58
Query: 283 GYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG-PMS 341
GY +GY S K + K+ + T+ +L + Y + ++A N +G G P+
Sbjct: 59 GYAIGYGIGSPH-------AQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLY 111
Query: 342 EEVKQYTAEGTP 353
E P
Sbjct: 112 ESAVTRPHTSGP 123
Score = 51.7 bits (124), Expect = 2e-08
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 333 NKLGPGPMSEEVKQYTAEGTPEQ-----PPQDNTCTTLTSQTIRVSWVSPPLITANGVIK 387
+ GP ++ + T E ++ P +I VSW +PP N V++
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRP-LVTSIVVSW-TPPE-NQNIVVR 58
Query: 388 GYKVVYGPSDTW 399
GY + YG
Sbjct: 59 GYAIGYGIGSPH 70
Score = 42.1 bits (99), Expect = 5e-05
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 133 KSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP-SKNVTLSPSNRVPA 184
++ K+ +Q Y L +Y+ + A N+GEG P ++ P P+
Sbjct: 72 QTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTSGPS 124
Score = 35.5 bits (82), Expect = 0.011
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 217 WKTYHIRIVAENEIGSSEP-SDTVTILTAEEAPSG 250
Y I + A N +G P ++ PS
Sbjct: 91 SSHYVITLKAFNNVGEGIPLYESAVTRPHTSGPSS 125
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 96.3 bits (240), Expect = 5e-24
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 11/128 (8%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S I ++ PS P + +++SW PP G IQ + V +
Sbjct: 1 GSSGSSGKPAIPSSSVLPS-APRDVVPVLVSSRFVRLSWRPPAEA--KGNIQTFTVFFSR 57
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
++ T LT+ +LK Y+ V A N+ GPG S+ +K T
Sbjct: 58 EGDNRERALNTTQ-----PGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVAT-- 110
Query: 351 GTPEQPPQ 358
PE P
Sbjct: 111 -QPESGPS 117
Score = 47.4 bits (113), Expect = 6e-07
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
G S + ++ P P+D ++S+ +R+SW PP A G I+ + V +
Sbjct: 1 GSSGSSGKPAIPSSSVLPS-APRDVVPVLVSSRFVRLSW-RPPA-EAKGNIQTFTVFF 55
Score = 43.6 bits (103), Expect = 1e-05
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
G + ++ + GD+ E + LK + Y F V A G
Sbjct: 44 AKGNIQTFTVFFSREGDNR----ERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGP 99
Query: 168 GQPSKNVT 175
G+ S+ +
Sbjct: 100 GESSQPIK 107
Score = 43.2 bits (102), Expect = 2e-05
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
Y R+VA NE G E S + + T E+
Sbjct: 84 EAMYTFRVVAYNEWGPGESSQPIKVATQPESG 115
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 94.8 bits (236), Expect = 1e-23
Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 7/113 (6%)
Query: 243 TAEEAPSGPPTHIKVEATDQN--TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFE 300
+ P+ P + V + + VSW PP NG I Y + Y +
Sbjct: 3 SGSSGPTSAPKDLTVITREGKPRAVIVSWQPPL--EANGKITAYILFYTLDKNIPIDDWI 60
Query: 301 TVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
S G + L T Y +QA N G GP+S+ + T + +
Sbjct: 61 METIS---GDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG 110
Score = 47.4 bits (113), Expect = 5e-07
Identities = 15/66 (22%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
Query: 347 YTAEGTPEQPPQDNT--CTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPK 404
+ P P+D T + + VSW P ANG I Y + Y D
Sbjct: 2 SSGSSGPTSAPKDLTVITREGKPRAVIVSWQPPL--EANGKITAYILFYTLDKNIPIDDW 59
Query: 405 TDICTD 410
Sbjct: 60 IMETIS 65
Score = 38.9 bits (91), Expect = 5e-04
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
NG ++ + T + + + + IS ++T++ L Y F + A + G
Sbjct: 37 ANGKITAYILFYTLDKNIPID--DWIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKGV 94
Query: 168 GQPSKNVT 175
G S +
Sbjct: 95 GPLSDPIL 102
Score = 38.1 bits (89), Expect = 9e-04
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
Y+ RI A N G SD + T + + P +
Sbjct: 79 DTMYYFRIQARNSKGVGPLSDPILFRTLKVSG--PSS 113
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 103 bits (258), Expect = 2e-23
Identities = 53/379 (13%), Positives = 106/379 (27%), Gaps = 45/379 (11%)
Query: 59 RNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIK 118
+Q S E I + W D + + + + P +++ +
Sbjct: 463 GDQASCENELLKFSYIRTSFDKILLRWEPYWP-PDFRDLLGFMLFYKEAPYQNVTEFDGQ 521
Query: 119 RTERGDS----ALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE-----GQ 169
+S + + S + GLK Y +V + G
Sbjct: 522 DACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGA 581
Query: 170 PSKNVTL-------SPSNRVPARIASF-------------NDNFTA------TYTEDIKL 203
S + + S + S N N T ED +L
Sbjct: 582 KSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSEL 641
Query: 204 PCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN 263
L + ++ +T+ +E+ ++ + P +K +++
Sbjct: 642 FELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILK--ELEES 699
Query: 264 TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYT 323
+ + ++ + + E F K + L +S L+ +T
Sbjct: 700 SFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKV-VNKESLVISGLRHFT 758
Query: 324 QYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQP----PQDNTCTTLTSQTIRVSWVSPPL 379
Y + +QA N+ P +A PE T + + + W P
Sbjct: 759 GYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPK- 817
Query: 380 ITANGVIKGYKVVYGPSDT 398
NG+I Y+V Y
Sbjct: 818 -EPNGLIVLYEVSYRRYGD 835
Score = 95.0 bits (235), Expect = 1e-20
Identities = 46/373 (12%), Positives = 93/373 (24%), Gaps = 47/373 (12%)
Query: 58 LRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE---EILPNGVLSD 114
R RGE + L N N ++L S + TI + N L
Sbjct: 382 FRKLRLIRGETLEIG-----NYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCL 436
Query: 115 LSIKRTE-------RGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
I + E R + + + S + + S ++ + I +
Sbjct: 437 SEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPD 496
Query: 168 GQPS-------KNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEII---- 216
+ K + A ++++T + P +
Sbjct: 497 FRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGL 556
Query: 217 --WKTYHIRIVAENEIGSSE-----PSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSW 269
W Y I + SD + + T PS P + + + + W
Sbjct: 557 KPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPS-VPLDPISVSNSSSQIILKW 615
Query: 270 SPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV 329
PP NG I Y V ++ + D + +S
Sbjct: 616 KPPS--DPNGNITHYLVFWERQAEDSELFE-----------LDYCLKGLKLPSRTWSPPF 662
Query: 330 QALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGY 389
++ + E P+ Q +S ++ +
Sbjct: 663 ESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKR 722
Query: 390 KVVYGPSDTWYGD 402
+ + + +
Sbjct: 723 RSLGDVGNAGNNE 735
Score = 95.0 bits (235), Expect = 2e-20
Identities = 41/287 (14%), Positives = 72/287 (25%), Gaps = 57/287 (19%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
PNG ++ + + + + K + + +
Sbjct: 621 PNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRT----------WSPPFESEDSQKH 670
Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------- 218
Q + P + + L V P K
Sbjct: 671 NQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGN 730
Query: 219 ----------------------------TYHIRIVAENEIGSSEPSDTVTILTA----EE 246
Y I + A N+ E ++A E
Sbjct: 731 AGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEA 790
Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
+ E + N + + W P+ NG+I Y V Y+ ++ L +T K
Sbjct: 791 KADDIVGPVTHEIFENNVVHLMWQEPK--EPNGLIVLYEVSYRRYGDEELHLCDTR---K 845
Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
E L L YSV ++A + G G +E Y +
Sbjct: 846 HFALERGCRLRGLS-PGNYSVRIRATSLAGNGSWTEPTYFYVTDYLD 891
Score = 48.8 bits (115), Expect = 4e-06
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
PNG++ + GD L C+ ++K + + GL NY + A++ G
Sbjct: 819 PNGLIVLYEVSYRRYGDEELHLCD--TRKHFALERGCRLRGLSPG-NYSVRIRATSLAGN 875
Query: 168 GQPSKNVTL--SPSNRVPARIA 187
G ++ + VP+ IA
Sbjct: 876 GSWTEPTYFYVTDYLDVPSNIA 897
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 91.7 bits (228), Expect = 2e-22
Identities = 30/128 (23%), Positives = 44/128 (34%), Gaps = 11/128 (8%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S + P PT + A +L+VSW P +QGY V Y+
Sbjct: 1 GSSGSSGSHDSRLTAGVP-DTPTRLVFSALGPTSLRVSWQEPRC---ERPLQGYSVEYQL 56
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
+ E + + + + L Y V+A ++ G G E V T E
Sbjct: 57 LNGG-----ELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGV--ITIE 109
Query: 351 GTPEQPPQ 358
P
Sbjct: 110 SQVSGPSS 117
Score = 51.3 bits (123), Expect = 3e-08
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
G S G P+ P + L ++RVSW P ++GY V Y
Sbjct: 1 GSSGSSGSHDSRLTAGVPD-TPTRLVFSALGPTSLRVSW-QEPR--CERPLQGYSVEYQL 56
Query: 396 SDT 398
+
Sbjct: 57 LNG 59
Score = 40.9 bits (96), Expect = 1e-04
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
+Y R+ A+++ G + V T E SGP +
Sbjct: 83 NHSYVFRVRAQSQEGWGREREGVI--TIESQVSGPSS 117
Score = 40.1 bits (94), Expect = 2e-04
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
L S++ L I + Q + L +Y+F V A + G
Sbjct: 42 RCERPLQGYSVEYQLLNGGELHRLNIPN----PAQTSVVVEDLLPNHSYVFRVRAQSQEG 97
Query: 167 EGQPSKNVT 175
G+ + V
Sbjct: 98 WGREREGVI 106
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 89.8 bits (223), Expect = 7e-22
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S L + P P+ + V N + +SW+PP N V++GY +GY
Sbjct: 1 GSSGSSGPENDLDESQVP-DQPSSLHVRPQT-NCIIMSWTPPLNP--NIVVRGYIIGYGV 56
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG-PMSEEVKQYTA 349
S + + + K+ + ++ L++ + Y + ++A N G G P+ E +
Sbjct: 57 GSPY-------AETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSI 109
Query: 350 EGTPE 354
P
Sbjct: 110 TSGPS 114
Score = 46.3 bits (110), Expect = 1e-06
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
G S P+QP + + I +SW +PPL N V++GY + YG
Sbjct: 1 GSSGSSGPENDLDESQVPDQPS--SLHVRPQTNCIIMSW-TPPL-NPNIVVRGYIIGYGV 56
Query: 396 SDT 398
Sbjct: 57 GSP 59
Score = 39.7 bits (93), Expect = 3e-04
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVP 183
++ ++ S+Q Y L+ +Y+ + A N GEG P + S
Sbjct: 60 YAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSG 112
Score = 32.0 bits (73), Expect = 0.13
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 219 TYHIRIVAENEIGSSEP-SDTVTILTAEEAPS 249
Y I + A N G P ++ T + PS
Sbjct: 83 HYVISLKAFNNAGEGVPLYESATTRSITSGPS 114
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 89.3 bits (222), Expect = 1e-21
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
Query: 239 VTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFL 298
+ + + APS I+ E Q ++ + W PE+ NG+I Y + Y E +
Sbjct: 2 SSGSSGQAAPS-QVVVIRQERAGQTSVSLLWQEPEQP--NGIILEYEIKYYEKDKEMQ-- 56
Query: 299 FETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
+S + T+S LK T+Y V+A G G S+ ++ T + P P
Sbjct: 57 ----SYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGK--PSGPS 109
Score = 43.5 bits (103), Expect = 1e-05
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
PNG++ + IK E+ + + SGLK Y+F V A T+ G
Sbjct: 37 PNGIILEYEIKYYEKDKE-----MQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGC 91
Query: 168 GQPSKNV---TLSPS 179
G+ S+ + T PS
Sbjct: 92 GRFSQAMEVETGKPS 106
Score = 43.5 bits (103), Expect = 1e-05
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 347 YTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKT 405
+ + P ++ + W P NG+I Y++ Y D T
Sbjct: 5 SSGQAAP-SQVVVIRQERAGQTSVSLLW-QEPE-QPNGIILEYEIKYYEKDKEMQSYST 60
Score = 33.9 bits (78), Expect = 0.027
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
Y ++ A G S + + T + PSGP +
Sbjct: 76 GTRYVFQVRARTSAGCGRFSQAMEVETGK--PSGPSS 110
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 89.0 bits (221), Expect = 1e-21
Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 243 TAEEAPSGPPT-HIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFET 301
+ P P + + + + W+PP H +G+I+ Y V Y + +
Sbjct: 3 SGSSGPDAPRNLQLSLPREAEGVIVGHWAPPI--HTHGLIREYIVEYSRSGSK------- 53
Query: 302 VDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
++ + + + +L T Y+V V A+ G G S+ T +G+ P
Sbjct: 54 -MWASQRAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG--PS 106
Score = 43.2 bits (102), Expect = 2e-05
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 347 YTAEGTPEQPPQDN-TCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYG--PSDTW 399
+ P+ P + I W +PP+ +G+I+ Y V Y S W
Sbjct: 2 SSGSSGPDAPRNLQLSLPREAEGVIVGHW-APPI-HTHGLIREYIVEYSRSGSKMW 55
Score = 37.4 bits (87), Expect = 0.002
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
Y +R+ A G SD+ +I T + SGP +
Sbjct: 73 NTLYTVRVAAVTSRGIGNWSDSKSITTIK--GSGPSS 107
Score = 35.5 bits (82), Expect = 0.008
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 7/76 (9%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
+G++ + ++ + G + E L Y V A T+ G
Sbjct: 36 THGLIREYIVEYSRSGSK-------MWASQRAASNFTEIKNLLVNTLYTVRVAAVTSRGI 88
Query: 168 GQPSKNVTLSPSNRVP 183
G S + +++
Sbjct: 89 GNWSDSKSITTIKGSG 104
Score = 27.8 bits (62), Expect = 3.1
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 409 TDIRASWVSPPLITANGVIKGYKVVYG--PSDTW 440
I W +PP+ +G+I+ Y V Y S W
Sbjct: 24 GVIVGHW-APPI-HTHGLIREYIVEYSRSGSKMW 55
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 87.6 bits (217), Expect = 6e-21
Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 8/125 (6%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPP--ERDHWNGVIQGYYVGY 288
GSS S T + P PP ++ A + ++VSW+ ++ ++ Y V +
Sbjct: 1 GSSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRW 60
Query: 289 KETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
+ + + + T + LK T Y V S T
Sbjct: 61 RTSFSASAKYKSE------DTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATT 114
Query: 349 AEGTP 353
E +
Sbjct: 115 YEASG 119
Score = 48.3 bits (115), Expect = 4e-07
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITA--NGVIKGYKVVY 393
G S TP PP LT +RVSW + ++ Y V +
Sbjct: 1 GSSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRW 60
Query: 394 GPSDTWYGDPKTDICTD 410
S + K++ T
Sbjct: 61 RTSFSASAKYKSEDTTS 77
Score = 38.7 bits (90), Expect = 7e-04
Identities = 27/142 (19%), Positives = 42/142 (29%), Gaps = 22/142 (15%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILW--NMNNKRLDPKSDNRYTIREE 105
SS F + + ++ P +Q A + + W N K YT+R
Sbjct: 2 SSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVR-- 59
Query: 106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI 165
RT SA K + + ++Y A+GLK Y F V + N
Sbjct: 60 ------------WRTSFSASA------KYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNR 101
Query: 166 GEGQPSKNVTLSPSNRVPARIA 187
S +
Sbjct: 102 RSSTWSMTAHATTYEASGPSSG 123
Score = 37.5 bits (87), Expect = 0.002
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGP 251
Y ++ SS S T T E +
Sbjct: 88 NTMYEFSVMVTKNRRSSTWSMTAHATTYEASGPSS 122
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 85.6 bits (212), Expect = 2e-20
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
+ P + I+V + ++L ++W+ P +G + Y V Y E + P +
Sbjct: 3 SGSSGPP-AVSDIRVTRSSPSSLSLAWAVPRAP--SGAVLDYEVKYHEKGAEGPSSVRFL 59
Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
E+ L LK Y V V+A ++ G GP +E T + P
Sbjct: 60 K-----TSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQT---QLDSGP 106
Score = 42.1 bits (99), Expect = 3e-05
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW 399
+ P D T + ++ ++W P +G + Y+V Y
Sbjct: 3 SGSSGP-PAVSDIRVTRSSPSSLSLAWAVPR--APSGAVLDYEVKYHEKGAE 51
Score = 36.7 bits (85), Expect = 0.003
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
P+G + D +K E+G + + + + E GLK+ +Y+ V A + G
Sbjct: 34 PSGAVLDYEVKYHEKGAEG----PSSVRFLKTSENRAELRGLKRGASYLVQVRARSEAGY 89
Query: 168 GQPSKNVT 175
G +
Sbjct: 90 GPFGQEHH 97
Score = 31.7 bits (72), Expect = 0.17
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSG 250
+Y +++ A +E G T ++
Sbjct: 74 GASYLVQVRARSEAGYGPFGQEHHSQTQLDSGPS 107
Score = 27.4 bits (61), Expect = 5.2
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 409 TDIRASWVSPPLITANGVIKGYKVVYGPSDTW 440
+ + +W P +G + Y+V Y
Sbjct: 22 SSLSLAWAVPR--APSGAVLDYEVKYHEKGAE 51
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 90.7 bits (224), Expect = 3e-20
Identities = 45/313 (14%), Positives = 101/313 (32%), Gaps = 26/313 (8%)
Query: 52 PEFEIKLRNQTSRRGEPSVLQCEAK-------GEKPIGILWNMNNKRLDPKSDNRYTIRE 104
P I + + C K I+W N+ + +YTI
Sbjct: 5 PCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPK---EQYTIIN 61
Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTN 164
+ +D++ + + ++ +K +N V
Sbjct: 62 RTASSVTFTDIA--SLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKK 119
Query: 165 IG-EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIR 223
+ E + L + + + + + A P + V + + +
Sbjct: 120 MRCEWDGGRETHLETNFTLKSE---WATHKFADCKAKRDTPT-SCTVDYSTVYFVNIEVW 175
Query: 224 IVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATD--QNTLKVSWSPPERDHWNGVI 281
+ AEN +G SD + + PP ++ V ++ + LK++W+ P + +I
Sbjct: 176 VEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPS--IKSVII 232
Query: 282 QGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMS 341
Y + Y+ + + T+ LK +T+Y ++ + + G G S
Sbjct: 233 LKYNIQYRTKDAST---WSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS 289
Query: 342 EEVKQYTAEGTPE 354
+ ++ + T E
Sbjct: 290 DWSEEASGI-TYE 301
Score = 47.5 bits (112), Expect = 5e-06
Identities = 25/185 (13%), Positives = 58/185 (31%), Gaps = 19/185 (10%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
I+ ++ + T+ P P ++ + ++ W H
Sbjct: 78 QLTCNILTFGQLEQNVYGITIISGL----PPEKPKNLSCIVNEGKKMRCEWDGGRETH-- 131
Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTL-SSLKTYTQYSVVVQALNKLGP 337
+ + + + + + D + T+ S + V V+A N LG
Sbjct: 132 -LETNFTLKSEWATH------KFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGK 184
Query: 338 GPMSEEVKQYTAEGTPEQPPQDN-TCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP- 395
+ P P + + S ++++W +P + + +I Y + Y
Sbjct: 185 VTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSI--KSVIILKYNIQYRTK 242
Query: 396 -SDTW 399
+ TW
Sbjct: 243 DASTW 247
Score = 30.6 bits (68), Expect = 1.2
Identities = 27/220 (12%), Positives = 58/220 (26%), Gaps = 61/220 (27%)
Query: 66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDS 125
+P L C K + W+ + + +T++ E + +
Sbjct: 105 EKPKNLSCIVNEGKKMRCEWDGGR---ETHLETNFTLKSEWATH------KFADCKAKRD 155
Query: 126 ALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG---------------QP 170
+C + + N +V A +G+ P
Sbjct: 156 TPTSCTVDYSTVYFV-------------NIEVWVEAENALGKVTSDHINFDPVYKVKPNP 202
Query: 171 SKNVTLSPSNRVPARIA------SFNDNFTATY---------TEDIKLPCLTVGVPAPEI 215
N+++ S + + + S Y + ++P
Sbjct: 203 PHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSF 262
Query: 216 I------WKTYHIRIVAENEIGS---SEPSDTVTILTAEE 246
+ Y RI E G S+ S+ + +T E+
Sbjct: 263 TVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED 302
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 84.8 bits (210), Expect = 4e-20
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 9/112 (8%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
+ PS P + + ++ +SW PE+ NG+I Y + Y E ++
Sbjct: 3 SGSSGPSTVPI-MHQVSATMRSITLSWPQPEQP--NGIILDYEIRYYEKEHNEFN----- 54
Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPE 354
S + + + L+ Y V V+A G G S ++ T +
Sbjct: 55 -SSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSGP 105
Score = 40.5 bits (95), Expect = 1e-04
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
+ P P + T ++I +SW P NG+I Y++ Y +
Sbjct: 3 SGSSGPSTVP-IMHQVSATMRSITLSWPQPE--QPNGIILDYEIRYYEKEH 50
Score = 38.6 bits (90), Expect = 5e-04
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
PNG++ D I+ E+ + E S SQ T GL+ Y+ V A T G
Sbjct: 34 PNGIILDYEIRYYEKEHN-----EFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGY 88
Query: 168 GQPSKNV---TLSPS 179
G+ S + TL+ S
Sbjct: 89 GKFSGKMCFQTLTDS 103
Score = 32.8 bits (75), Expect = 0.068
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGP 251
Y +++ A G + S + T ++
Sbjct: 75 VYVVQVRARTVAGYGKFSGKMCFQTLTDSGPSS 107
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 83.3 bits (206), Expect = 1e-19
Identities = 16/116 (13%), Positives = 31/116 (26%), Gaps = 8/116 (6%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPP--ERDHWNGVIQGYYVGYKETSTDKPFLFE 300
+ P PP ++ +T++++W+ + + Y V +K
Sbjct: 3 SGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN 62
Query: 301 TVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQP 356
++ LK T Y V S T E +
Sbjct: 63 A------NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGPSS 112
Score = 47.1 bits (112), Expect = 8e-07
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 347 YTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGV--IKGYKVVYGPSDT 398
+ P PP + L+ TIR++W L + + Y V + +
Sbjct: 2 SSGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIP 55
Score = 36.3 bits (84), Expect = 0.004
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGP 251
Y ++ SS S T T E +
Sbjct: 78 NTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGPSS 112
Score = 36.0 bits (83), Expect = 0.005
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVT 175
K + ++ ++Y +GLK Y F V + S
Sbjct: 57 NTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAH 101
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 85.6 bits (212), Expect = 2e-19
Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 23/156 (14%)
Query: 242 LTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFET 301
+ A P ++V + TL + W P Y + Y S K +
Sbjct: 1 INAGTDLD-NPKDLEVSDPTETTLSLRWRRPV-----AKFDRYRLTYVSPSGKKNEMEIP 54
Query: 302 VDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNT 361
VD L L T+Y++ + A + T P+ +
Sbjct: 55 VD-------STSFILRGLDAGTEYTISLVAEKGRHKSKPTT-----IKGSTVVGSPKGIS 102
Query: 362 CTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
+ +T + VSW P + Y+V Y P
Sbjct: 103 FSDITENSATVSWTPPR-----SRVDSYRVSYVPIT 133
Score = 79.8 bits (197), Expect = 1e-17
Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 17/130 (13%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
Y I +VAE S+P+ G P I +N+ VSW+PP
Sbjct: 68 GTEYTISLVAEKGRHKSKPTTIKG-----STVVGSPKGISFSDITENSATVSWTPP---- 118
Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
+ Y V Y + P + +G + L L Y+V + ++
Sbjct: 119 -RSRVDSYRVSYVPITGGTPNVVTV------DGSKTRTKLVKLVPGVDYNVNIISVKGFE 171
Query: 337 PG-PMSEEVK 345
P+S +K
Sbjct: 172 ESEPISGILK 181
Score = 38.2 bits (89), Expect = 0.002
Identities = 19/141 (13%), Positives = 43/141 (30%), Gaps = 29/141 (20%)
Query: 133 KSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS-----------KNVTLSPSN- 180
+I ++ GL Y + A + +P+ K ++ S
Sbjct: 49 NEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITE 108
Query: 181 --------RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK------TYHIRIVA 226
+R+ S+ ++ + +TV Y++ I++
Sbjct: 109 NSATVSWTPPRSRVDSYRVSYVPITGGTPNV--VTVDGSKTRTKLVKLVPGVDYNVNIIS 166
Query: 227 ENEIGSSEPSDTVTILTAEEA 247
SEP + + TA ++
Sbjct: 167 VKGFEESEPI-SGILKTALDS 186
Score = 29.3 bits (66), Expect = 2.2
Identities = 4/41 (9%), Positives = 11/41 (26%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS 171
+ + + L +Y + + E +P
Sbjct: 136 TPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPI 176
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 82.8 bits (205), Expect = 3e-19
Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 6/127 (4%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S T++ E P GPPT++ + ++ + + P D I + V +
Sbjct: 1 GSSGSSGTISSGVPPELP-GPPTNLGISNIGPRSVTLQFRPGY-DG-KTSISRWLVEAQV 57
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
+ + + E + + L +T YS ++ +N +G P S+ ++
Sbjct: 58 GVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ-- 115
Query: 351 GTPEQPP 357
T + P
Sbjct: 116 -TLQSGP 121
Score = 44.6 bits (106), Expect = 6e-06
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 217 WKTYHIRIVAENEIGSSEPSD-TVTILTAEEAPS 249
+ Y R+ N +G+S PS + I T + PS
Sbjct: 89 FTCYSFRMRQVNIVGTSPPSQPSRKIQTLQSGPS 122
Score = 31.2 bits (71), Expect = 0.29
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 137 ISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSK 172
+ E L Y F + +G PS+
Sbjct: 74 NEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQ 109
Score = 30.8 bits (70), Expect = 0.40
Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 8/69 (11%)
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY-- 393
G S + P PP + + + +++ + + I + V
Sbjct: 1 GSSGSSGTISSGVPPELPG-PPTNLGISNIGPRSVTLQFRPGY--DGKTSISRWLVEAQV 57
Query: 394 ---GPSDTW 399
G + W
Sbjct: 58 GVVGEGEEW 66
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 85.4 bits (211), Expect = 3e-19
Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 11/153 (7%)
Query: 210 VPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATD--QNTLKV 267
V + + + + AEN +G SD + + PP ++ V ++ + LK+
Sbjct: 66 VDYSTVYFVNIEVWVEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKL 124
Query: 268 SWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSV 327
+W+ P + +I Y + Y+ + + T+ LK +T+Y
Sbjct: 125 TWTNPS--IKSVIILKYNIQYRTKDAST---WSQIPPEDTASTRSSFTVQDLKPFTEYVF 179
Query: 328 VVQALNKLGPGPMSE---EVKQYTAEGTPEQPP 357
++ + + G G S+ E T E P + P
Sbjct: 180 RIRCMKEDGKGYWSDWSEEASGITYEDRPSKEP 212
Score = 51.1 bits (122), Expect = 2e-07
Identities = 22/156 (14%), Positives = 50/156 (32%), Gaps = 15/156 (9%)
Query: 248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
P P ++ + ++ W + + + + + + D +
Sbjct: 7 PPEKPKNLSCIVNEGKKMRCEWDGG---RETHLETNFTLKSEWATH------KFADCKAK 57
Query: 308 EGKEHHLTL-SSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDN-TCTTL 365
T+ S + V V+A N LG + P P + +
Sbjct: 58 RDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEE 117
Query: 366 TSQTIRVSWVSPPLITANGVIKGYKVVYGP--SDTW 399
S ++++W +P + + +I Y + Y + TW
Sbjct: 118 LSSILKLTWTNPSI--KSVIILKYNIQYRTKDASTW 151
Score = 40.0 bits (93), Expect = 7e-04
Identities = 30/227 (13%), Positives = 59/227 (25%), Gaps = 61/227 (26%)
Query: 66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDS 125
+P L C K + W+ + + +T++ E +
Sbjct: 9 EKPKNLSCIVNEGKKMRCEWDGGR---ETHLETNFTLKSEWATH---------------- 49
Query: 126 ALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG---------------QP 170
K + N +V A +G+ P
Sbjct: 50 ---KFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNP 106
Query: 171 SKNVTLSPSNRVPARIA------SFNDNFTATY---------TEDIKLPCLTVGVPAPEI 215
N+++ S + + + S Y + ++P
Sbjct: 107 PHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSF 166
Query: 216 I------WKTYHIRIVAENEIGS---SEPSDTVTILTAEEAPSGPPT 253
+ Y RI E G S+ S+ + +T E+ PS P+
Sbjct: 167 TVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPS 213
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 80.6 bits (199), Expect = 9e-19
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 245 EEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDF 304
+ S PT ++V +LK+SW ++ Y + Y ET D P TV
Sbjct: 4 GSSVSSVPTKLEVVDATPTSLKISWDAYYSS--WQNVKYYRITYGETGGDSPVQEFTVP- 60
Query: 305 SKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV 344
G T+S LK Y++ V A + PG
Sbjct: 61 ----GYYSTATISGLKPGVDYTITVYAYDTFFPGYEPNSP 96
Score = 46.3 bits (110), Expect = 1e-06
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 350 EGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
+ P T ++++SW + ++ +K Y++ YG +
Sbjct: 4 GSSVSSVPTKLEVVDATPTSLKISWDAYY--SSWQNVKYYRITYGETGG 50
Score = 30.9 bits (70), Expect = 0.24
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS 171
++ + T SGLK +Y V A G
Sbjct: 53 PVQEFTVPGYYSTATISGLKPGVDYTITVYAYDTFFPGYEP 93
Score = 26.3 bits (58), Expect = 9.8
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 219 TYHIRIVAENEIG-SSEPSDTVTI 241
Y I + A + EP+ ++I
Sbjct: 76 DYTITVYAYDTFFPGYEPNSPISI 99
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 86.0 bits (212), Expect = 5e-18
Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 8/139 (5%)
Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
+ Y+ + A N +G S+ + V E+ PT KV+ + +K+SW P
Sbjct: 351 NQEIYNFTLNAHNPLGRSQSTILVN--ITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNF 408
Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA--LN 333
+ + + ++ V E + + L L YT Y+ ++
Sbjct: 409 AKINFLCEIEIKKSNSVQEQ----RNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTET 464
Query: 334 KLGPGPMSEEVKQYTAEGT 352
S + + T E +
Sbjct: 465 FWKWSKWSNKKQHLTTEAS 483
Score = 83.4 bits (205), Expect = 3e-17
Identities = 50/316 (15%), Positives = 87/316 (27%), Gaps = 26/316 (8%)
Query: 95 KSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQN 154
+ ++ ++ + ++ C I +I SGL++ +
Sbjct: 127 RKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSD 186
Query: 155 YIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIK-LPCLTVGVPAP 213
+ S P + P ++V + T K L L P
Sbjct: 187 WSPVKQIS-----WIPDSQTKVFPQDKV----ILVGSDITFCCVSQEKVLSALIGHTNCP 237
Query: 214 EIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEA----------PSGPPTHIKVEATDQN 263
I ++ I N I S S T + T E+ P P + E D
Sbjct: 238 LIHLDGENVAIKIRN-ISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLK 296
Query: 264 TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYT 323
+ SW+P G Y + S L + + L L
Sbjct: 297 EIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEA---PTNESYQLLFQMLPNQE 353
Query: 324 QYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITAN 383
Y+ + A N LG + V E P + S +++SW P
Sbjct: 354 IYNFTLNAHNPLGRSQSTILVN--ITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKI 411
Query: 384 GVIKGYKVVYGPSDTW 399
+ ++ S
Sbjct: 412 NFLCEIEIKKSNSVQE 427
Score = 59.1 bits (142), Expect = 2e-09
Identities = 29/183 (15%), Positives = 55/183 (30%), Gaps = 14/183 (7%)
Query: 194 TATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
IK+P L+ G Y I I + ++ GSS T+ P P
Sbjct: 40 YQLEKTSIKIPALSHG---------DYEITINSLHDFGSSTSKFTLNEQNVSLIPD-TPE 89
Query: 254 HIKVEA-TDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDF-SKEEGKE 311
+++ A +TL + W+ + + + + + T +
Sbjct: 90 ILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTL 149
Query: 312 HHLTLSSLKTY--TQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQT 369
HH + +S + V ++ EE ++ P T +
Sbjct: 150 HHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKV 209
Query: 370 IRV 372
I V
Sbjct: 210 ILV 212
Score = 39.4 bits (91), Expect = 0.003
Identities = 33/218 (15%), Positives = 60/218 (27%), Gaps = 53/218 (24%)
Query: 66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDS 125
P L CE K I WN R L + ++ + G
Sbjct: 283 DTPQQLNCETHDLKEIICSWNPG--------------RVTALVGPRATSYTLVESFSGKY 328
Query: 126 ALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLS-------P 178
++ +++ L ++ Y F + A +G Q + V ++ P
Sbjct: 329 VRLKR---AEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTP 385
Query: 179 SN---------------RVPARIASFNDNF----TATYTEDIKLPCLTVGVPAPEII--- 216
++ +P A N + + + GV +
Sbjct: 386 TSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVAL 445
Query: 217 -----WKTYHIRI--VAENEIGSSEPSDTVTILTAEEA 247
+ Y RI E S+ S+ LT E +
Sbjct: 446 DKLNPYTLYTFRIRCSTETFWKWSKWSNKKQHLTTEAS 483
Score = 38.3 bits (88), Expect = 0.006
Identities = 41/309 (13%), Positives = 80/309 (25%), Gaps = 57/309 (18%)
Query: 154 NYIFYVTASTNIGEGQPSKNVTLSPSNRVPA--RIASFNDNFTATYTEDIKLPCLTVGVP 211
+Y + + + G + + +P I + +F+ T + L G
Sbjct: 56 DYEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFS---TSTLYLKWNDRGSV 112
Query: 212 APEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVS--- 268
P + I ++ E + V ++T + +G T L+ +
Sbjct: 113 FPHRSNVIWEI------KVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHF 166
Query: 269 --------------------WSPPERDHWNGVIQGYY--------VG--------YKETS 292
WSP ++ W Q VG +E
Sbjct: 167 VEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKV 226
Query: 293 TDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGT 352
+G+ + + ++ V + G
Sbjct: 227 LSALIGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGT------VIFAGY 280
Query: 353 PEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIK-GYKVVYGPSDTWYGDPKTDICTDI 411
P PQ C T + I SW + G Y +V S + + + T+
Sbjct: 281 PPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNE 340
Query: 412 RASWVSPPL 420
+ L
Sbjct: 341 SYQLLFQML 349
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 80.5 bits (198), Expect = 1e-17
Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 29/165 (17%)
Query: 249 SGP-PTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
SGP I + N+ + W+ P+ I Y + ++ ++ + T+
Sbjct: 1 SGPVEVFITETPSQPNSHPIQWNAPQ----PSHISKYILRWRPKNSVGRWKEATIP---- 52
Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQP----------- 356
G + T+ LK Y + ++ + G ++ T+ TP
Sbjct: 53 -GHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFS 111
Query: 357 ---PQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
+ T +T+ + VSWVS + G++V Y S+
Sbjct: 112 PLVATSESVTEITASSFVVSWVSAS-----DTVSGFRVEYELSEE 151
Score = 75.1 bits (184), Expect = 9e-16
Identities = 20/144 (13%), Positives = 43/144 (29%), Gaps = 24/144 (16%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPS--------------GPPTHIKVEATDQNT 264
Y ++++ + G E + T+ P T V ++
Sbjct: 68 VYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASS 127
Query: 265 LKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQ 324
VSW + + G+ V Y+ + + + + + L +
Sbjct: 128 FVVSWVSA-----SDTVSGFRVEYELSEEGDEPQYLDLP-----STATSVNIPDLLPGRK 177
Query: 325 YSVVVQALNKLGPGPMSEEVKQYT 348
Y V V +++ G + Q T
Sbjct: 178 YIVNVYQISEDGEQSLILSTSQTT 201
Score = 33.1 bits (75), Expect = 0.13
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVT 175
E + + S + L + YI V + GE + +
Sbjct: 154 EPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTS 198
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 77.6 bits (191), Expect = 2e-17
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILP 108
PP + Q + GE ++C + P I W+ L+ + RYT+
Sbjct: 13 GPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 71
Query: 109 NGVLSDLSIKRTERGD-SALFTC 130
GV+S L+I R D ++ C
Sbjct: 72 EGVISTLTISNIVRADFQTIYNC 94
Score = 30.2 bits (68), Expect = 0.68
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 12/88 (13%)
Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPE-IIWK-------- 218
G + TL+ P I+S A + E ++ C P P+ I W
Sbjct: 1 GSSGSSGTLTV--NGPPIISSTQTQ-HALHGEKGQIKCFIRSTPPPDRIAWSWKENVLES 57
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEE 246
R E T+TI
Sbjct: 58 GTSGRYTVETISTEEGVISTLTISNIVR 85
Score = 27.2 bits (60), Expect = 7.0
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPE-IIWK 540
P I+S A + E ++ C P P+ I W
Sbjct: 12 NGPPIISSTQTQ-HALHGEKGQIKCFIRSTPPPDRIAWS 49
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 76.3 bits (188), Expect = 4e-17
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
+ P G PT + + T NT + W PP+ G + GY + Y +P T+
Sbjct: 3 SGSSGP-GRPT-MMISTTAMNTALLQWHPPKEL--PGELLGYRLQYCRADEARP---NTI 55
Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQP 356
DF K + H T++ L T Y + A N+ G G E+ + T E
Sbjct: 56 DFGK---DDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIR-TPEDLSGPS 105
Score = 44.7 bits (106), Expect = 4e-06
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
G L ++ ++ T + + +GL K YIF + A G
Sbjct: 33 LPGELLGYRLQYCRADEARPNTIDF-----GKDDQHFTVTGLHKGTTYIFRLAAKNRAGL 87
Query: 168 GQPSKNVTLSPSNR 181
G+ + +P +
Sbjct: 88 GEEFEKEIRTPEDL 101
Score = 37.8 bits (88), Expect = 0.001
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 347 YTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
+ P +P + T + + + W PP G + GY++ Y +D
Sbjct: 2 SSGSSGPGRPTMMISTTAMNT--ALLQW-HPPKEL-PGELLGYRLQYCRADE 49
Score = 35.5 bits (82), Expect = 0.008
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 218 KTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
TY R+ A+N G E + E SGP +
Sbjct: 73 TTYIFRLAAKNRAGLGEEFEKEIRTP--EDLSGPSS 106
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 74.3 bits (183), Expect = 1e-16
Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
S PT ++V A +L +SW + Y + Y ET + P TV
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDASS-----SSVSYYRITYGETGGNSPVQEFTVP---- 54
Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE 343
G T+S L Y++ V A S
Sbjct: 55 -GSSSTATISGLSPGVDYTITVYAYYSYYDLYYSYS 89
Score = 43.5 bits (103), Expect = 8e-06
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 352 TPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
+ P T ++ +SW + + Y++ YG +
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDASS-----SSVSYYRITYGETG 43
Score = 28.9 bits (65), Expect = 1.2
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 133 KSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS 171
+ + T SGL +Y V A + + S
Sbjct: 49 QEFTVPGSSSTATISGLSPGVDYTITVYAYYSYYDLYYS 87
Score = 27.7 bits (62), Expect = 3.5
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTA 244
Y I + A S + + +
Sbjct: 70 DYTITVYAYYSYYDLYYSYSPSSINY 95
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 73.5 bits (181), Expect = 3e-16
Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 13/115 (11%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
++ + +V +V+W P + + Y + + +
Sbjct: 2 SSGSSGPDQCKPPQVTCRSATCAQVNWEVPLSN--GTDVTEYRLEWGGVEGS----MQIC 55
Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
G + L T Y VQAL+ +G GP SE V T P P
Sbjct: 56 Y----CGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVT---PPSSGP 103
Score = 40.7 bits (96), Expect = 1e-04
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
TY+ R+ A + +G+ S+ V +T +
Sbjct: 71 ATTYYCRVQALSVVGAGPFSEVVACVTPPSSG 102
Score = 35.4 bits (82), Expect = 0.008
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 138 SSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVT 175
++YE GL Y V A + +G G S+ V
Sbjct: 57 CGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVA 94
Score = 35.0 bits (81), Expect = 0.012
Identities = 7/53 (13%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWY 400
+ P+ + T ++ +V+W P + + Y++ +G +
Sbjct: 3 SGSSGPD-QCKPPQVTCRSATCAQVNWEVPL--SNGTDVTEYRLEWGGVEGSM 52
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 74.1 bits (182), Expect = 3e-16
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
Query: 256 KVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLT 315
T++V+W+ + + IQGY V Y++TS + + E
Sbjct: 23 NPVVLTPTTVQVTWTVDRQPQF---IQGYRVMYRQTSGL-QATSSWQNLDAKVPTERSAV 78
Query: 316 LSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQ 358
L +LK Y + V+ G SE T E + P
Sbjct: 79 LVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESG--PSS 119
Score = 36.4 bits (84), Expect = 0.004
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 138 SSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLS 177
+ + LKK Y V N +G S++ T+
Sbjct: 71 VPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVR 110
Score = 32.9 bits (75), Expect = 0.076
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 363 TTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
LT T++V+W I+GY+V+Y +
Sbjct: 25 VVLTPTTVQVTWTVDR---QPQFIQGYRVMYRQTSG 57
Score = 32.5 bits (74), Expect = 0.096
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPP 252
TY I++ S++ T+ T EE SGP
Sbjct: 85 GVTYEIKVRPYFNEFQGMDSESKTVRTTEE--SGPS 118
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 73.3 bits (180), Expect = 5e-16
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 240 TILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLF 299
+ ++ P+ P ++ T N+ +SW P GY + + + + F
Sbjct: 2 SSGSSGPVPATPILQLEECCTHNNSATLSWKQPPLS--TVPADGYILELDDGNGGQ---F 56
Query: 300 ETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
V GKE T+ L + Y+ V+A NK G P S+ + T+EG+
Sbjct: 57 REVY----VGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106
Score = 42.1 bits (99), Expect = 4e-05
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
TY+ R+ A N+ G S S T+ + T+E +
Sbjct: 77 TYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106
Score = 35.5 bits (82), Expect = 0.009
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 138 SSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTL 176
++ GL Y V A G SK + L
Sbjct: 61 VGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVL 99
Score = 31.7 bits (72), Expect = 0.14
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW 399
++ P P + + +SW PP + GY + +
Sbjct: 5 SSGPVPATPILQLEECCTHNNSATLSWKQPP--LSTVPADGYILELDDGNGG 54
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 78.7 bits (193), Expect = 7e-16
Identities = 29/180 (16%), Positives = 54/180 (30%), Gaps = 9/180 (5%)
Query: 234 EPSDTVTILTAEEAPSGPPTHIKVEAT-DQNTLKVSWSPPER-DHWNGVIQGYYVGYKET 291
+ T + E PP ++ L + W PP DH+ Y + Y+
Sbjct: 17 STTFGCTSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNI 76
Query: 292 STDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG-PGPMSEEVKQYTAE 350
++ T + ++G + + ++ + Q N +E + +
Sbjct: 77 GSETWKTIITKNLHYKDGFDLN---KGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQ 133
Query: 351 GTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTD 410
G PE QD C Q + SW + Y + Y + D
Sbjct: 134 GIPETXVQDMDCVYYNWQYLLCSWKPGIG---VLLDTNYNLFYWYEGLDHALQCVDYIKA 190
Score = 66.7 bits (162), Expect = 5e-12
Identities = 26/181 (14%), Positives = 47/181 (25%), Gaps = 6/181 (3%)
Query: 220 YHIRIVAENEIGS-SEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
+ N S ++T ++ + P + + L SW P
Sbjct: 107 TLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIG---V 163
Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG 338
+ Y + Y D + + Y + + V ++ P
Sbjct: 164 LLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPI 223
Query: 339 PMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
S PP T T +S I++ W P Y++ DT
Sbjct: 224 R-SSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFD-YEIEIREDDT 281
Query: 399 W 399
Sbjct: 282 T 282
Score = 63.7 bits (154), Expect = 5e-11
Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 16/149 (10%)
Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
+K ++I + +E S T PP ++ +K+ WS P
Sbjct: 206 DYKDFYICVNGSSENKPIR-SSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGP 264
Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKL 335
Y + +E T + TL + Q VV++ +
Sbjct: 265 IPARCFD-YEIEIREDDTTL---------VTATVENETYTLKTTNETRQLCFVVRSKVNI 314
Query: 336 GP---GPMSE--EVKQYTAEGTPEQPPQD 359
G SE + + + E ++
Sbjct: 315 YCSDDGIWSEWSDKQCWEGEDLSKKTLLR 343
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 71.7 bits (176), Expect = 1e-15
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
+ S PT ++V A +L +SW P + + Y + Y ET + P TV
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDAPMS---SSSVYYYRITYGETGGNSPVQEFTVP--- 56
Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE 343
T+S L Y++ V A + G M
Sbjct: 57 --YSSSTATISGLSPGVDYTITVYAWGEDSAGYMFMY 91
Score = 41.7 bits (98), Expect = 4e-05
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 352 TPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
+ P T ++ +SW +P ++ + Y++ YG +
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDAPM---SSSSVYYYRITYGETG 45
Score = 30.9 bits (70), Expect = 0.23
Identities = 10/50 (20%), Positives = 16/50 (32%)
Query: 132 IKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNR 181
++ + T SGL +Y V A G +S + R
Sbjct: 50 VQEFTVPYSSSTATISGLSPGVDYTITVYAWGEDSAGYMFMYSPISINYR 99
Score = 28.2 bits (63), Expect = 2.0
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 409 TDIRASWVSPPLITANGVIKGYKVVYGPSD 438
T + SW +P ++ + Y++ YG +
Sbjct: 19 TSLLISWDAPM---SSSSVYYYRITYGETG 45
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 76.7 bits (189), Expect = 1e-15
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
PP F K + +G L+CE +G P + W+ + + L +Y I+
Sbjct: 191 EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS--GKKYK----IMSE 244
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQ 135
L+ + I + D + C+ +
Sbjct: 245 NFLTSIHILNVDSADIGEYQCKASND 270
Score = 74.4 bits (183), Expect = 6e-15
Identities = 36/202 (17%), Positives = 65/202 (32%), Gaps = 51/202 (25%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
APP F++K + GE +C G PI I W +N+ + P + + T+ E
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVE---NT 60
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
L++ + +GD+ +TC AS G+
Sbjct: 61 AT---LTVLKVTKGDAGQYTCY-----------------------------ASNVAGKDS 88
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK----------T 219
S + + P I + E + C G P +++W
Sbjct: 89 CSAQLGV---QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK 145
Query: 220 YHIRIVAEN---EIGSSEPSDT 238
+ + V E+ + D+
Sbjct: 146 FRMSFVESVAVLEMYNLSVEDS 167
Score = 60.9 bits (148), Expect = 2e-10
Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 53/203 (26%)
Query: 50 APPEFEIKLR-NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
PP F KL ++ ++ E + +C+ G I +LW + + S R + E +
Sbjct: 97 EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV-- 154
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
+ L + DS +TCE A G
Sbjct: 155 ----AVLEMYNLSVEDSGDYTCE-----------------------------AHNAAGSA 181
Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------TY 220
S + +L + P D+ L C G P ++ W
Sbjct: 182 --SSSTSLKV--KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK 237
Query: 221 HIRIVAEN-----EIGSSEPSDT 238
+I++EN I + + +D
Sbjct: 238 KYKIMSENFLTSIHILNVDSADI 260
Score = 34.3 bits (79), Expect = 0.088
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 505 PARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
P I + E + C G P +++W
Sbjct: 99 PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWY 134
Score = 32.4 bits (74), Expect = 0.34
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ P D+ L C G P ++ W
Sbjct: 190 KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH 227
Score = 30.5 bits (69), Expect = 1.4
Identities = 6/37 (16%), Positives = 8/37 (21%)
Query: 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
P + E C G +I W
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWA 40
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 72.0 bits (177), Expect = 1e-15
Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 9/123 (7%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S T P P ++ +N+L + W P D+ IQ + + + E
Sbjct: 1 GSSGSSGAEIFTTLSCEP-DIPNPPRIANRTKNSLTLQWKAPS-DN-GSKIQNFVLEWDE 57
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
+ F G + ++ L + A N G SEEV YT+
Sbjct: 58 GKGNGEFC------QCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSG 111
Query: 351 GTP 353
+
Sbjct: 112 CSG 114
Score = 44.3 bits (105), Expect = 6e-06
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
R+ A N+ G+S S+ V T+ +
Sbjct: 83 AMGCKFRLSARNDYGTSGFSEEVLYYTSGCSG 114
Score = 32.8 bits (75), Expect = 0.077
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 135 QKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTL 176
Q Q ++ + L F ++A + G S+ V
Sbjct: 66 QCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLY 107
Score = 32.8 bits (75), Expect = 0.089
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY-- 393
G S T P+ P T ++ + W +P I+ + + +
Sbjct: 1 GSSGSSGAEIFTTLSCEPD-IPNPPRIANRTKNSLTLQWKAPS--DNGSKIQNFVLEWDE 57
Query: 394 GPSDTWY 400
G + +
Sbjct: 58 GKGNGEF 64
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 78.7 bits (194), Expect = 1e-15
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
APP F KL + ++ GE LQ +G +PI + W + + +SDN + I +
Sbjct: 476 APPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIW-----ISYS 530
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQ 135
++ L R E ++ +TC+IK++
Sbjct: 531 ENIATLQFSRAEPANAGKYTCQIKNE 556
Score = 74.8 bits (184), Expect = 2e-14
Identities = 35/194 (18%), Positives = 65/194 (33%), Gaps = 39/194 (20%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
PP F K + +G L+CE +G P + W+ + + L +S +Y I+
Sbjct: 383 EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL--RSGKKYK----IMSE 436
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
L+ + I + D + C AS ++G
Sbjct: 437 NFLTSIHILNVDSADIGEYQC-----------------------------KASNDVGSDT 467
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENE 229
++TL + P R + + E+++L G + W IV E++
Sbjct: 468 CVGSITL----KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESD 523
Query: 230 IGSSEPSDTVTILT 243
S+ + L
Sbjct: 524 NIWISYSENIATLQ 537
Score = 72.9 bits (179), Expect = 8e-14
Identities = 41/263 (15%), Positives = 77/263 (29%), Gaps = 72/263 (27%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
PP F L + + GEP LQC+ G I I W + +L + +
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFK------N 58
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
++ L I + + D +TC A ++G
Sbjct: 59 NVASLVINKVDHSDVGEYTC-----------------------------KAENSVGAVAS 89
Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------TYHI 222
S + + ++P A + T + C G ++ W ++
Sbjct: 90 SAVLVIKER-KLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANL 148
Query: 223 RI------------------------VAENEIGSSEPSDTVTILTAEEAPS--GPPTHIK 256
+ A N +G++ S +T+ E P P +
Sbjct: 149 QTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVD 208
Query: 257 VEATDQNTL--KVSWSPPERDHW 277
+ + T V+ + P + W
Sbjct: 209 LALGESGTFKCHVTGTAPIKITW 231
Score = 69.8 bits (171), Expect = 9e-13
Identities = 36/231 (15%), Positives = 63/231 (27%), Gaps = 71/231 (30%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
PP F KL++ G P +C G +P+ + W + + L ++ +
Sbjct: 101 PPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQ------TSFIH 154
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
++ L I +T++ + C +AS +G
Sbjct: 155 NVATLQILQTDQSHVGQYNC-----------------------------SASNPLGTASS 185
Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK------------ 218
S +TLS P + E C G +I W
Sbjct: 186 SAKLTLSEHEVPPFFDLKP-VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY 244
Query: 219 -------TYHIRI-------------VAENEIGSSEPSDTVTILTAEEAPS 249
T + + A N G S + + +E P
Sbjct: 245 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV---QEPPR 292
Score = 66.0 bits (161), Expect = 1e-11
Identities = 52/328 (15%), Positives = 99/328 (30%), Gaps = 100/328 (30%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
PP F++K + GE +C G PI I W +N+ + P + + T+ E
Sbjct: 196 VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVE---NT 252
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
L+ + + +GD+ +TC AS G+
Sbjct: 253 ATLT---VLKVTKGDAGQYTC-----------------------------YASNVAGKDS 280
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------TYH 221
S + + P I + E + C G P +++W +
Sbjct: 281 CSAQLGV---QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK 337
Query: 222 IRI------------------------VAENEIGSSEPSDTVTILTAEEAPS--GPPTHI 255
R+ A N GS+ S ++ + +E P P +
Sbjct: 338 FRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV---KEPPVFRKKPHPV 394
Query: 256 KVEATDQNTL--KVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHH 313
+ L ++ +PP + W + +E + K + E
Sbjct: 395 ETLKGADVHLECELQGTPPFQVSW-------HKDKRELRSGKKYKIM------SENFLTS 441
Query: 314 LTLSSLK-----TYTQYSVVVQALNKLG 336
+ + ++ Y +A N +G
Sbjct: 442 IHILNVDSADIGEYQ-----CKASNDVG 464
Score = 34.4 bits (79), Expect = 0.091
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 505 PARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
P I + E + C G P +++W
Sbjct: 291 PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLW 325
Score = 32.5 bits (74), Expect = 0.42
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ P D+ L C G P ++ W
Sbjct: 382 KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH 419
Score = 32.1 bits (73), Expect = 0.54
Identities = 7/41 (17%), Positives = 9/41 (21%)
Query: 500 KNDRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
VP + E C G +I W
Sbjct: 192 SEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWA 232
Score = 31.3 bits (71), Expect = 1.0
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ P R + + E+++L G + W
Sbjct: 475 KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWF 512
Score = 28.2 bits (63), Expect = 7.7
Identities = 10/35 (28%), Positives = 12/35 (34%)
Query: 505 PARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
P ++ A E I L C G P I W
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAW 39
Score = 28.2 bits (63), Expect = 8.1
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
+P A + T + C G ++ W
Sbjct: 100 LPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWY 136
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 74.9 bits (184), Expect = 2e-15
Identities = 40/224 (17%), Positives = 65/224 (29%), Gaps = 51/224 (22%)
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK----------T 219
S + S+ ++ + + C P+ I W
Sbjct: 6 ASSALVPRGSHMYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNY 64
Query: 220 YHIRI------------------------VAENEIGSSEPSDTVTILTAEEAPSGPPTHI 255
+I+I A N IG + P+
Sbjct: 65 SNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD----TPSSPSID 120
Query: 256 KVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDK-PFLFETVDFSKEEGKEHHL 314
+VE +T +V + PE I Y ++ + + KE E +
Sbjct: 121 QVEPY-SSTAQVQFDEPEATG-GVPILKYKAEWRAVGEEVWHSKWYDA---KEASMEGIV 175
Query: 315 TLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQ 358
T+ LK T Y+V + ALN G G +S + T QP Q
Sbjct: 176 TIVGLKPETTYAVRLAALNGKGLGEISAASEFKT------QPVQ 213
Score = 67.5 bits (165), Expect = 4e-13
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 5/86 (5%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
P+ + + G + CE I W + + L + + I
Sbjct: 17 MYAPKLQGP-VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN---- 71
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKS 134
S L + D + C +
Sbjct: 72 TPSASYLEVTPDSENDFGNYNCTAVN 97
Score = 33.6 bits (77), Expect = 0.10
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 136 KISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVT 175
K +S + GLK + Y + A G G+ S
Sbjct: 167 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASE 206
Score = 28.3 bits (63), Expect = 4.9
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 521 EDIKLPCLTVGVPAPEIIWK 540
+ + C P+ I W
Sbjct: 34 NQVNITCEVFAYPSATISWF 53
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 77.2 bits (190), Expect = 2e-15
Identities = 35/169 (20%), Positives = 55/169 (32%), Gaps = 32/169 (18%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
P F + + T+ G+ +L+CE G+ I W N + L+P + R +LP+
Sbjct: 120 GPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDS---RVVVLPS 176
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
G L I R + GDS ++ C ++ + E
Sbjct: 177 GA---LQISRLQPGDSGVYRCSARNPASTRTGNEAEV----------------------- 210
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
+ P N A +D L C G P P W
Sbjct: 211 ---RILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWL 256
Score = 73.7 bits (181), Expect = 3e-14
Identities = 40/207 (19%), Positives = 68/207 (32%), Gaps = 40/207 (19%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRLDPKSDNRYTIREEIL 107
F + + + RG +L C A+ ++ + I W + L D+R L
Sbjct: 19 RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQ----QL 74
Query: 108 PNGVL--SDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI 165
PNG L ++ R + D L+ C AS
Sbjct: 75 PNGSLLIQNILHSRHHKPDEGLYQC-----------------------------EASLGD 105
Query: 166 GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--TYHIR 223
S+ + + P R S ++ TA + + L C +G P P I W+ +
Sbjct: 106 SGSIISRTAKVMVA--GPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLN 163
Query: 224 IVAENEIGSSEPSDTVTILTAEEAPSG 250
+ + PS + I + SG
Sbjct: 164 PIPGDSRVVVLPSGALQISRLQPGDSG 190
Score = 56.8 bits (137), Expect = 7e-09
Identities = 30/169 (17%), Positives = 49/169 (28%), Gaps = 41/169 (24%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
F + N + G+ +VL+C G P W + + +S + +L
Sbjct: 220 RQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSK-----KYSLLGG 274
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
+L I DS +TC +
Sbjct: 275 S---NLLISNVTDDDSGTYTC-----------------------------VVTYKNENIS 302
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
S +T+ VP + N A + DI+ C G P P + W
Sbjct: 303 ASAELTV----LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM 347
Score = 55.2 bits (133), Expect = 3e-08
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 9/86 (10%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
PP F N + +C G+ + W N + P +I+
Sbjct: 311 VPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSD------YFQIVGG 364
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQ 135
+L I + D + C +++
Sbjct: 365 S---NLRILGVVKSDEGFYQCVAENE 387
Score = 32.5 bits (74), Expect = 0.37
Identities = 9/36 (25%), Positives = 10/36 (27%)
Query: 505 PARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
N A +D L C G P P W
Sbjct: 221 QLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWL 256
Score = 31.7 bits (72), Expect = 0.62
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
VP + N A + DI+ C G P P + W
Sbjct: 310 LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM 347
Score = 29.8 bits (67), Expect = 2.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
P R S ++ TA + + L C +G P P I W+
Sbjct: 120 GPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQ 156
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 70.6 bits (173), Expect = 3e-15
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
++ + PP+++ + + ++L+VSW+PP G + Y++ Y S P +V
Sbjct: 2 SSGSSGRSPPSNLALASETPDSLQVSWTPP-----LGRVLHYWLTYAPASGLGPEKSVSV 56
Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
G H+TL L+ T+Y V+V A+ G Q P
Sbjct: 57 P-----GARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPSGP 102
Score = 40.5 bits (95), Expect = 1e-04
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
++ + PP + + T +++VSW +PP G + Y + Y P+
Sbjct: 2 SSGSSGRSPPSNLALASETPDSLQVSW-TPP----LGRVLHYWLTYAPAS 46
Score = 32.4 bits (74), Expect = 0.091
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
Y + + A G SE + T TA PSGP +
Sbjct: 73 KYRVLVSAIYAAGRSEAV-SATGQTA--CPSGPSS 104
Score = 32.0 bits (73), Expect = 0.10
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 133 KSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS--KNVTLSPS 179
KS + + L+ Y V+A G + T PS
Sbjct: 52 KSVSVPGARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPS 100
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 70.3 bits (172), Expect = 6e-15
Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 15/124 (12%)
Query: 220 YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG 279
+H + + L + + S PT ++V A +L +SW P
Sbjct: 5 HHHHSSDYKDDDDKGEN-----LYFQGSVSDVPTKLEVVAATPTSLLISWDAP-----AV 54
Query: 280 VIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
++ Y + Y ET + P TV G + T+S LK Y++ V A+ L
Sbjct: 55 TVRYYRITYGETGGNSPVQEFTVP-----GSKSTATISGLKPGVDYTITVYAVTGLRLML 109
Query: 340 MSEE 343
+
Sbjct: 110 AGSK 113
Score = 40.3 bits (94), Expect = 2e-04
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 342 EEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
++ + +G+ P T ++ +SW +P ++ Y++ YG +
Sbjct: 17 DKGENLYFQGSVSDVPTKLEVVAATPTSLLISWDAPA-----VTVRYYRITYGETG 67
Score = 27.9 bits (62), Expect = 4.1
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 137 ISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS 171
+ + T SGLK +Y V A T +
Sbjct: 77 VPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAG 111
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 72.1 bits (177), Expect = 8e-15
Identities = 36/170 (21%), Positives = 56/170 (32%), Gaps = 38/170 (22%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILP 108
+ F + Q ++GE + + C P + W +N+ + SDNR+ +L
Sbjct: 1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPA-VSWLYHNEEVTTISDNRFA----MLA 55
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
N L I + D ++ CE + EA G ++ I V I
Sbjct: 56 NNN---LQILNINKSDEGIYRCEGRV----------EARGEIDFRDIIVIVNVPPAISMP 102
Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
Q S N T E++ C G P P I W
Sbjct: 103 QKSFNATAERG-------------------EEMTFSCRASGSPEPAISWF 133
Score = 57.9 bits (140), Expect = 5e-10
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 45 LLLSSAPPEFEI--KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
+++ + PP + K N T+ RGE C A G I W N K ++ + +Y +
Sbjct: 90 IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE--NEKYIL 147
Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCE 131
+ ++L+++ D + C
Sbjct: 148 KGSN------TELTVRNIINSDGGPYVCR 170
Score = 30.9 bits (70), Expect = 0.63
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
N TA E++ C G P P I W
Sbjct: 107 NATAERGEEMTFSCRASGSPEPAISWF 133
Score = 30.5 bits (69), Expect = 0.80
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 521 EDIKLPCLTVGVPAPEIIWK 540
ED ++ C PAP + W
Sbjct: 18 EDAEVVCRVSSSPAPAVSWL 37
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 69.4 bits (170), Expect = 1e-14
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 14/112 (12%)
Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
A S +K+ + L+++W+ + G + Y + +
Sbjct: 8 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNL-SYELHVLNQDEEWH---------- 56
Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQ 358
+ E + L+ L+ T Y V V+ L LGPGP S + + T+ P P
Sbjct: 57 QMVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTS---PPSGPS 105
Score = 30.9 bits (70), Expect = 0.29
Identities = 5/50 (10%), Positives = 13/50 (26%), Gaps = 1/50 (2%)
Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
+ G + + ++W G + Y++ D
Sbjct: 4 GSSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNL-SYELHVLNQD 52
Score = 29.8 bits (67), Expect = 0.75
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 143 TYEASGLKKKQNYIFYVTASTNIGEGQPSKNV---TLSPS 179
+ L+ YI V T +G G S + T PS
Sbjct: 63 RVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPPS 102
Score = 29.0 bits (65), Expect = 1.4
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
TY +R+ +G S T+ PSGP +
Sbjct: 74 TYIVRVRTLTPLGPGPFSPDHEFRTS--PPSGPSS 106
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 69.3 bits (170), Expect = 1e-14
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 12/127 (9%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S + + AP P + ++ + ++W+ P D N + Y + E
Sbjct: 4 GSSGRSAHLRVRQLPHAPEHP--VATLSTVERRAINLTWTKP-FDG-NSPLIRYILEMSE 59
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
+ L +VD K +T+ L Y + A+N +G G S++ ++ +
Sbjct: 60 NNAPWTVLLASVD-----PKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVS-- 112
Query: 351 GTPEQPP 357
PE P
Sbjct: 113 -LPESGP 118
Score = 45.0 bits (107), Expect = 5e-06
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
++Y R+ A N++G + S ++ E+
Sbjct: 86 ARSYQFRLCAVNDVGKGQFSKDTERVSLPESG 117
Score = 35.0 bits (81), Expect = 0.014
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVT 175
+ + + + GL ++Y F + A ++G+GQ SK+
Sbjct: 65 TVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTE 109
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 69.4 bits (170), Expect = 1e-14
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
++ + P+ +VE +T +V + PE I Y ++ +
Sbjct: 2 SSGSSGPSSPSIDQVEPYS-STAQVQFDEPEATG-GVPILKYKAEWRAVGEEVWH--SKW 57
Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQ 358
+KE E +T+ LK T Y+V + ALN G G +S + T P+
Sbjct: 58 YDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPK 113
Score = 45.1 bits (107), Expect = 4e-06
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
TY +R+ A N G E S T P
Sbjct: 77 ETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPK 113
Score = 32.8 bits (75), Expect = 0.072
Identities = 10/53 (18%), Positives = 18/53 (33%)
Query: 124 DSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTL 176
++ + K +S + GLK + Y + A G G+ S
Sbjct: 49 GEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 101
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 68.8 bits (168), Expect = 2e-14
Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 10/128 (7%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S + PP KV +++++ W +++ G + + E
Sbjct: 1 GSSGSSGMEPHKVVPLSKPHPPVVGKVTH---HSIELYWDLEQKEKRQGPQEQWLRFSIE 57
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
K + + G + L+ T Y ++ + G S V T
Sbjct: 58 EEDPKMHSYGVIY----TGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT-- 111
Query: 351 GTPEQPPQ 358
T E P
Sbjct: 112 -TRESGPS 118
Score = 39.6 bits (92), Expect = 4e-04
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
Y R+ + G E S V++ T E+
Sbjct: 87 LYKFRLKVTSPSGEYEYSPVVSVATTRESG 116
Score = 31.5 bits (71), Expect = 0.23
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 138 SSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLS 177
+ + GL+ + Y F + ++ GE + S V+++
Sbjct: 71 TGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVA 110
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 69.0 bits (169), Expect = 2e-14
Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 7/126 (5%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S V T + P P ++ K++W PP+ D+ I Y V E
Sbjct: 1 GSSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPK-DNGGATINKYVVEMAE 59
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
S +E + G L Y + V ++ G +SE + T
Sbjct: 60 GSNGNK--WEMI----YSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPA 113
Query: 351 GTPEQP 356
+
Sbjct: 114 VSGPSS 119
Score = 41.3 bits (97), Expect = 8e-05
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGP 251
Y +R+ ++ G S S+++ + T +
Sbjct: 87 FYRLRVYCISDGGQSAVSESLLVQTPAVSGPSS 119
Score = 30.9 bits (70), Expect = 0.40
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 143 TYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPS 179
+ L Y V ++ G+ S+++ +
Sbjct: 76 EHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTP 112
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 70.6 bits (173), Expect = 3e-14
Identities = 48/236 (20%), Positives = 75/236 (31%), Gaps = 61/236 (25%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
+ PPE K +NQ R G + C A+G+ P I+W N K++ + +RYT+ +
Sbjct: 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSG-TQSRYTV---LEQ 59
Query: 109 NGVLSDLSIKRTERG-DSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
G +S L I+ G D A + C ++ G + +
Sbjct: 60 PGGISILRIEPVRAGRDDAPYECVAEN-----------GVGDAVSADATLTIYEGDKTPA 108
Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------- 218
G P +T P R + + C +G P P I W
Sbjct: 109 GFPV--ITQGPGTR------------VIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMS 154
Query: 219 TYHIRI--------------------VAENEIGSSEPSDTVTILTAEEAPSGPPTH 254
+ VAEN +G+ T L + G H
Sbjct: 155 NPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEH--SKATNLYVKVRRVGTKHH 208
Score = 51.3 bits (123), Expect = 1e-07
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 9/85 (10%)
Query: 47 LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
+ P + G ++ C+A G I W N ++D S+ RY
Sbjct: 106 TPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDM-SNPRY-----S 159
Query: 107 LPNGVLSDLSIKRTERGDSALFTCE 131
L +G L I+ + D + C
Sbjct: 160 LKDGF---LQIENSREEDQGKYECV 181
Score = 30.5 bits (69), Expect = 0.99
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ + C +G P P I W
Sbjct: 119 TRVIEVGHTVLMTCKAIGNPTPNIYWI 145
Score = 30.1 bits (68), Expect = 1.2
Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 36/111 (32%)
Query: 179 SNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW-----------KTYHI----- 222
+ P I N C G P P I+W Y +
Sbjct: 2 TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61
Query: 223 -----RI--------------VAENEIGSSEPSD-TVTILTAEEAPSGPPT 253
RI VAEN +G + +D T+TI ++ P+G P
Sbjct: 62 GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPV 112
Score = 29.4 bits (66), Expect = 2.1
Identities = 9/36 (25%), Positives = 10/36 (27%)
Query: 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
P I N C G P P I+W
Sbjct: 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVW 40
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 67.3 bits (165), Expect = 5e-14
Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
++ + PP + V T ++ ++W + + Y + Y+ T+ PF
Sbjct: 2 SSGSSGPKPPIDLVVTETTATSVTLTWDSGN----SEPVTYYGIQYRAAGTEGPFQ---- 53
Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQ 358
+ ++ L +++Y+ V A+N +G GP SE V+ T E + P
Sbjct: 54 --EVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSG--PSS 105
Score = 46.1 bits (110), Expect = 1e-06
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
+ Y R++A N IG PS+ V T E++ P +
Sbjct: 71 FSEYAFRVLAVNSIGRGPPSEAVRARTGEQSG--PSS 105
Score = 34.2 bits (79), Expect = 0.022
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 138 SSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVT 175
Y GL Y F V A +IG G PS+ V
Sbjct: 57 GVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVR 94
Score = 30.3 bits (69), Expect = 0.45
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 347 YTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW 399
+ P +PP D T T+ ++ ++W S + + Y + Y + T
Sbjct: 2 SSGSSGP-KPPIDLVVTETTATSVTLTWDSGN----SEPVTYYGIQYRAAGTE 49
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 69.4 bits (170), Expect = 7e-14
Identities = 36/202 (17%), Positives = 56/202 (27%), Gaps = 52/202 (25%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILP 108
A + I L GE C A GE + I +N +++ R +
Sbjct: 1 ALLQVTISLSKVELSVGESKFFTCTAIGEPESI-DWYNPQGEKIIS--TQRVV----VQK 53
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
GV S L+I D+ ++ C A+ G+
Sbjct: 54 EGVRSRLTIYNANIEDAGIYRC-----------------------------QATDAKGQT 84
Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK---------- 218
Q V L ED ++ C PAP + W
Sbjct: 85 Q-EATVVL--EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS 141
Query: 219 TYHIRIVAEN--EIGSSEPSDT 238
++A N +I + SD
Sbjct: 142 DNRFAMLANNNLQILNINKSDE 163
Score = 61.0 bits (148), Expect = 5e-11
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
F + Q ++GE + + C + W +N+ + SDNR+ +L N
Sbjct: 95 QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFA----MLAN 150
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQ 135
+L I + D ++ CE + +
Sbjct: 151 N---NLQILNINKSDEGIYRCEGRVE 173
Score = 30.5 bits (69), Expect = 0.85
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
ED ++ C PAP + W
Sbjct: 105 PQEFKQGEDAEVVCRVSSSPAPAVSWL 131
Score = 27.4 bits (61), Expect = 8.4
Identities = 4/20 (20%), Positives = 6/20 (30%)
Query: 521 EDIKLPCLTVGVPAPEIIWK 540
E C +G P +
Sbjct: 18 ESKFFTCTAIGEPESIDWYN 37
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 66.6 bits (163), Expect = 1e-13
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 6/114 (5%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
+ P+ P H+ VE T + W PP+R G I GY V Y ++ E V
Sbjct: 3 SGSSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIG-AGGIDGYLVEYCLEGSE-----EWV 56
Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQP 356
+KE + T+ L T + V +N G + ++ T +
Sbjct: 57 PANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110
Score = 40.0 bits (94), Expect = 2e-04
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGP 251
R+V N G SEP+ + +T E+
Sbjct: 76 GARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110
Score = 32.3 bits (74), Expect = 0.084
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 5/47 (10%)
Query: 139 SQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPAR 185
++ + L +F V G +P+ V R
Sbjct: 63 VERCGFTVKDLPTGARILFRVVGVNIAGRSEPAT-----LLQPVTIR 104
Score = 30.0 bits (68), Expect = 0.56
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY--GPSDTW 399
+ G PQ T +T T + W PP G I GY V Y S+ W
Sbjct: 4 GSSGPTS-APQHLTVEDVTDTTTTLKW-RPPDRIGAGGIDGYLVEYCLEGSEEW 55
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 67.0 bits (164), Expect = 1e-13
Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 9/130 (6%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S + P PP +++ ++++SW+P + D+ N I + + Y++
Sbjct: 1 GSSGSSGPTP-APVYDVP-NPPFDLELTDQLDKSVQLSWTPGD-DN-NSPITKFIIEYED 56
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQY-TA 349
+ S + +L Y YS V A+N +G SE +QY T
Sbjct: 57 AMHKPGLWHHQTEVSGTQ----TTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTK 112
Query: 350 EGTPEQPPQD 359
P++ P
Sbjct: 113 ASEPDKNPTS 122
Score = 53.9 bits (130), Expect = 5e-09
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 217 WKTYHIRIVAENEIGSSEPSD-TVTILTAEEAPSGPPTHIKVE 258
+ Y R++A N IG S PS+ + LT P PT
Sbjct: 84 YVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGPSS 126
Score = 29.3 bits (66), Expect = 1.4
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 141 QMTYEASGLKKKQNYIFYVTASTNIGEGQPSK 172
T L NY F V A +IG+ PS+
Sbjct: 73 TQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSE 104
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 66.2 bits (162), Expect = 1e-13
Identities = 21/114 (18%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
++ + + PPT + V++ T+ + W PP+ + GY + Y T+ + +
Sbjct: 2 SSGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIG-AAGLDGYVLEYCFEGTE-----DWI 55
Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQP 356
+K+ + T++ L T + V V+A+N G + + +
Sbjct: 56 VANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSS 109
Score = 40.4 bits (95), Expect = 2e-04
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
+R+ A N G+SEP + +E+ GP +
Sbjct: 75 DAKIFVRVKAVNAAGASEPKYYSQPILVKES--GPSS 109
Score = 31.2 bits (71), Expect = 0.27
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY--GPSDTW 399
++ + PP T ++T T+ + W PP + GY + Y ++ W
Sbjct: 2 SSGSSGTSPPTLLTVDSVTDTTVTMRW-RPPDHIGAAGLDGYVLEYCFEGTEDW 54
Score = 30.0 bits (68), Expect = 0.63
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 5/43 (11%)
Query: 143 TYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPAR 185
+ +GL V A G +P S + +
Sbjct: 66 KFTITGLPTDAKIFVRVKAVNAAGASEPKY-----YSQPILVK 103
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 70.2 bits (172), Expect = 2e-13
Identities = 35/169 (20%), Positives = 54/169 (31%), Gaps = 36/169 (21%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
F + Q ++GE + + C + W +N+ + SDNR+ +L N
Sbjct: 97 QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFA----MLAN 152
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
L I + D ++ CE + EA G ++ I V I Q
Sbjct: 153 NN---LQILNINKSDEGIYRCEGRV----------EARGEIDFRDIIVIVNVPPAISMPQ 199
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
S N T E++ C G P P I W
Sbjct: 200 KSFNATAERG-------------------EEMTFSCRASGSPEPAISWF 229
Score = 68.7 bits (168), Expect = 6e-13
Identities = 32/171 (18%), Positives = 47/171 (27%), Gaps = 38/171 (22%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
S A + I L GE C A GE P I W S R +
Sbjct: 1 SMALLQVTISLSKVELSVGESKFFTCTAIGE-PESIDWYNPQGEK-IISTQRVV----VQ 54
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
GV S L+I D+ ++ C+ A G ++ + +
Sbjct: 55 KEGVRSRLTIYNANIEDAGIYRCQATD-----------AKGQTQEATVVLEIYQKLTF-- 101
Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
S + ED ++ C PAP + W
Sbjct: 102 -------REVVSPQ------------EFKQGEDAEVVCRVSSSPAPAVSWL 133
Score = 57.1 bits (138), Expect = 3e-09
Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 45 LLLSSAPPEFEI--KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
+++ + PP + K N T+ RGE C A G I W N K ++ + +Y +
Sbjct: 186 IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE--NEKYIL 243
Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135
+ ++L+++ D + C ++
Sbjct: 244 KGSN------TELTVRNIINSDGGPYVCRATNK 270
Score = 30.2 bits (68), Expect = 1.6
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
N TA E++ C G P P I W
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAISWF 229
Score = 30.2 bits (68), Expect = 1.6
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 521 EDIKLPCLTVGVPAPEIIWK 540
ED ++ C PAP + W
Sbjct: 114 EDAEVVCRVSSSPAPAVSWL 133
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 65.8 bits (161), Expect = 2e-13
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 9/112 (8%)
Query: 243 TAEEAPSGPPTHIKVEATDQNT-LKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFET 301
+ P GP +++ + +++ W PP D I Y V D+P
Sbjct: 3 SGSSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDG-GSPISCYSVEMSPIEKDEPREVYQ 61
Query: 302 VDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
G E T+SSL YS ++A NK+G GP SE+ TA G+
Sbjct: 62 -------GSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSG 106
Score = 42.3 bits (100), Expect = 3e-05
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
KTY R+ A N++G S+ I TA +
Sbjct: 75 GKTYSFRLRAANKMGFGPFSEKCDITTAPGSG 106
Score = 28.8 bits (65), Expect = 1.6
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 141 QMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTL 176
++ S L + Y F + A+ +G G S+ +
Sbjct: 64 EVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDI 99
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 68.2 bits (167), Expect = 2e-13
Identities = 36/200 (18%), Positives = 55/200 (27%), Gaps = 51/200 (25%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILP 108
P L + E + C + +P I W N + D RY+ I
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPE-ISWTRNKILIKL-FDTRYS----IRE 59
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
NG L+I E D ++ C TA+ +G
Sbjct: 60 NG--QLLTILSVEDSDDGIYCC-----------------------------TANNGVGG- 87
Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------TY 220
L + +I N LPC T+G P P + W
Sbjct: 88 AVESCGALQVK--MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENS 145
Query: 221 HIRIVAEN--EIGSSEPSDT 238
I ++ I + + D
Sbjct: 146 RIAVLESGSLRIHNVQKEDA 165
Score = 53.2 bits (128), Expect = 2e-08
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 11/83 (13%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILP 108
P+ N G +VL C G KP + W + L ++R +L
Sbjct: 99 MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPS-VSWIKGDSALRE--NSRIA----VLE 151
Query: 109 NGVLSDLSIKRTERGDSALFTCE 131
+G L I ++ D+ + C
Sbjct: 152 SG---SLRIHNVQKEDAGQYRCV 171
Score = 31.2 bits (71), Expect = 0.61
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ +I N LPC T+G P P + W
Sbjct: 99 MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWI 135
Score = 30.9 bits (70), Expect = 0.65
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 502 DRVPA--RIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
+++P I + + A E C P PEI W
Sbjct: 2 EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISW 41
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 67.9 bits (166), Expect = 2e-13
Identities = 39/216 (18%), Positives = 62/216 (28%), Gaps = 61/216 (28%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
A + T +G+P L C +G + I W + + D Y E
Sbjct: 1 AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQN-LDQLYIPVSEQHWI 59
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
G LS+K ER D+ + C++ + GE +
Sbjct: 60 GF---LSLKSVERSDAGRYWCQV------------------------------EDGGETE 86
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAP-EIIWK---------- 218
S+ V L + + +L C VG P P I+W
Sbjct: 87 ISQPVWL--TVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA 144
Query: 219 --TYHIRIV-----------AENEIGSSEPSDTVTI 241
+ + A N G + S T T+
Sbjct: 145 PSPSVLNVTGVTQSTMFSCEAHNLKGLAS-SRTATV 179
Score = 30.2 bits (68), Expect = 1.1
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
T + + +KL C G+ P+I W
Sbjct: 11 KLTVSQGQPVKLNCSVEGMEEPDIQWV 37
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 71.5 bits (174), Expect = 2e-13
Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 8/139 (5%)
Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
+ ++ + N +G ++ + + + E PT +KV+ + + SW P
Sbjct: 356 GQEIHNFTLTGRNPLGQAQSAVVINVT--ERVAPHDPTSLKVKDINSTVVTFSWYLPG-- 411
Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA--LN 333
++ + + + ++ K T+ E +H+ + L YT Y+ V+
Sbjct: 412 NFTKINLLCQIEICKANSKKEVRNATI--RGAEDSTYHVAVDKLNPYTAYTFRVRCSSKT 469
Query: 334 KLGPGPMSEEVKQYTAEGT 352
S+E + T E T
Sbjct: 470 FWKWSRWSDEKRHLTTEAT 488
Score = 58.0 bits (139), Expect = 4e-09
Identities = 51/382 (13%), Positives = 105/382 (27%), Gaps = 28/382 (7%)
Query: 35 LNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEK-PIGILWNMNNKRLD 93
L+P + L+ +F + ++ + P +L A + + WN L
Sbjct: 60 LSPGDHEVTINYLNGFQSKFTLNEKDVSLIPETPEILDLSADFFTSSLLLKWNDRGSALP 119
Query: 94 PKSDNRYTIR-EEILPNGVLSDLSIKRTERGDSALFTCEIKSQK-----ISSQQMTYEAS 147
S+ + I+ + ++ + + G + S S + +
Sbjct: 120 HPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCATHSVSIRWHID 179
Query: 148 GLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLT 207
+ + + + P ++V N T K+
Sbjct: 180 SPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKV----VLAGSNMTICCMSPTKVLSGQ 235
Query: 208 VGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAE----------EAPSGPPTHIKV 257
+G +I + I SE S T I + P P +
Sbjct: 236 IGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSC 295
Query: 258 EATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLS 317
E D + SW+P G Y ++ S +F ++ E + L +
Sbjct: 296 ETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSA-VFHRIEGLTNE--TYRLGVQ 352
Query: 318 SLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSP 377
++ + N LG V E P + S + SW P
Sbjct: 353 MHPGQEIHNFTLTGRNPLGQA--QSAVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLP 410
Query: 378 PLITANGVIKGYKVVYGPSDTW 399
+ ++ +++
Sbjct: 411 G--NFTKINLLCQIEICKANSK 430
Score = 36.9 bits (84), Expect = 0.018
Identities = 15/209 (7%), Positives = 44/209 (21%), Gaps = 23/209 (11%)
Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
+K + +W P + + P V
Sbjct: 5 DDDKDLKCTTNNMRVWDCTWPAPLGV--SPGTVKDICIKDRFHSCHPLETTNVKIPALSP 62
Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQT 369
+H +T++ L + + + L P P + + +
Sbjct: 63 GDHEVTINYLNGFQSKFTLNEKDVSLIPET----------------PEILDLSADFFTSS 106
Query: 370 IRVSWVSPPLITANGVIKGYKVVYGPSDT----WYGDPKTDI-CTDIRASWVSPPLITAN 424
+ + W + +++ + T + D W +
Sbjct: 107 LLLKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQ 166
Query: 425 GVIKGYKVVYGPSDTWYGHPGSFRNHCTW 453
+ + + + +
Sbjct: 167 CATHSVSIRWHIDSPHFSGYKEWSDWSPL 195
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 65.2 bits (159), Expect = 2e-13
Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 12/112 (10%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
+ P PP + + A T+ ++W P Y V S V
Sbjct: 3 SGSSGPLPPPRALTLAAVTPRTVHLTWQPSAG------ATHYLVRCSPASPKGEEEEREV 56
Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPE 354
+ E + L L+ Y V VQ+L + ++ T P
Sbjct: 57 QVGRPE-----VLLDGLEPGRDYEVSVQSLRGPEGSE-ARGIRARTPTSGPS 102
Score = 39.0 bits (91), Expect = 4e-04
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
+ P PP+ T +T +T+ ++W T Y V P+
Sbjct: 3 SGSSGPLPPPRALTLAAVTPRTVHLTWQPSAGAT------HYLVRCSPASP 47
Score = 28.6 bits (64), Expect = 1.6
Identities = 7/54 (12%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVT----LSPSN 180
E + +++ + GL+ ++Y V + + PS+
Sbjct: 50 EEEEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSGPSS 103
Score = 28.6 bits (64), Expect = 1.8
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPS 249
Y + + + SE + T PS
Sbjct: 73 DYEVSVQSLRGPEGSEAR-GIRARTPTSGPS 102
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 67.9 bits (166), Expect = 2e-13
Identities = 28/201 (13%), Positives = 50/201 (24%), Gaps = 48/201 (23%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
+ +I GE C+ G+ K I W N + R ++ +
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
L+I D+ ++ C + G
Sbjct: 62 ST---LTIYNANIDDAGIYKC-----------------------------VVTAEDGTQS 89
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK----------T 219
V + + ED + C V P IIWK
Sbjct: 90 -EATVNVKI--FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD 146
Query: 220 YHIRIVAEN--EIGSSEPSDT 238
+++ N +I + +D
Sbjct: 147 VRFIVLSNNYLQIRGIKKTDE 167
Score = 61.0 bits (148), Expect = 5e-11
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
F+ Q + GE +V+ C+ P I+W + + K D R+ +L N
Sbjct: 99 QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI----VLSN 154
Query: 110 GVLSDLSIKRTERGDSALFTCE 131
L I+ ++ D + CE
Sbjct: 155 NY---LQIRGIKKTDEGTYRCE 173
Score = 29.4 bits (66), Expect = 2.3
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
ED + C V P IIWK
Sbjct: 109 PQEFKEGEDAVIVCDVVSSLPPTIIWK 135
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 65.8 bits (161), Expect = 2e-13
Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 6/123 (4%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S + P P + + ++ V+W P + IQ + V YK+
Sbjct: 1 GSSGSSGSQPDHGRLSPP-EAPDRPTISTASETSVYVTWIPRG-NG-GFPIQSFRVEYKK 57
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
+ + S + ++ L+ Y V+ALN LG S + Y
Sbjct: 58 LKKVGDW---ILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVS 114
Query: 351 GTP 353
G+
Sbjct: 115 GSG 117
Score = 40.8 bits (96), Expect = 1e-04
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 217 WKTYHIRIVAENEIGSSEPSD-TVTILTAEEAPS 249
+Y R+ A N +G SEPS + + + PS
Sbjct: 86 GISYKFRVRALNMLGESEPSAPSRPYVVSGSGPS 119
Score = 33.9 bits (78), Expect = 0.035
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 134 SQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRV 182
+ I +++ E +GL+K +Y F V A +GE +PS PS
Sbjct: 68 TSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSA-----PSRPY 111
Score = 27.3 bits (61), Expect = 5.3
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKV 391
G S + PE P T +T + ++ V+W+ I+ ++V
Sbjct: 1 GSSGSSGSQPDHGRLSPPE-APDRPTISTASETSVYVTWIPRG--NGGFPIQSFRV 53
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 65.8 bits (160), Expect = 3e-13
Identities = 33/134 (24%), Positives = 43/134 (32%), Gaps = 14/134 (10%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGV-------IQG 283
GSS S E S T+ ++WSPP + G
Sbjct: 1 GSSGSSGDEETKAFEALLSNIVK-PVASDIQARTVVLTWSPPSSLINGETDESSVPELYG 59
Query: 284 YYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE 343
Y V T D + S G+E ++TL+ LK Y VQA G SE
Sbjct: 60 YEVLISSTGKDGKY------KSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEA 113
Query: 344 VKQYTAEGTPEQPP 357
T P+ P
Sbjct: 114 EIFTTLSCEPDIPN 127
Score = 38.8 bits (90), Expect = 0.001
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPP 252
YH ++ AE PS+ T P P
Sbjct: 94 DYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPN 127
Score = 31.1 bits (70), Expect = 0.42
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 134 SQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLS-----PSNRVPARIAS 188
++ + LK +Y V A N +G PS+ + P P RI+
Sbjct: 74 KSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPRISG 133
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 64.6 bits (158), Expect = 4e-13
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
S APP F++ L +Q+ R G+ ++ +GE + W N + + P R+ E
Sbjct: 2 SKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRP-DQRRFAEEAE-- 58
Query: 108 PNGVLSDLSIKRTERGDSALFTCE 131
G+ L I ERGD+ +TC+
Sbjct: 59 -GGLCR-LRILAAERGDAGFYTCK 80
Score = 29.9 bits (68), Expect = 0.58
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 14/61 (22%)
Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIWK---------TYHIRIVAEN-----EIGSSEPSD 237
+ + +D+ + G P P + W AE I ++E D
Sbjct: 14 DQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGD 73
Query: 238 T 238
Sbjct: 74 A 74
Score = 28.0 bits (63), Expect = 2.4
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ + +D+ + G P P + W
Sbjct: 14 DQSVREGQDVIMSIRVQGEPKPVVSWL 40
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 67.1 bits (164), Expect = 4e-13
Identities = 22/194 (11%), Positives = 55/194 (28%), Gaps = 42/194 (21%)
Query: 47 LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
+++ P F L++ G + + G + W + + + + I
Sbjct: 1 MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFS- 59
Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
+G L+I + +S ++ A+ G
Sbjct: 60 --DGRAK-LTIPAVTKANSGRYSL-----------------------------KATNGSG 87
Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK-------- 218
+ + + + P + T ++L G+P P + +
Sbjct: 88 QATSTAELLVKAE-TAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQS 146
Query: 219 TYHIRIVAENEIGS 232
+ +I E ++ S
Sbjct: 147 SLDFQISQEGDLYS 160
Score = 57.8 bits (140), Expect = 6e-10
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
+APP F +L++ T R+G LQ G + + + + + I
Sbjct: 101 TAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQS--SLDFQ----ISQ 154
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKS 134
G L L I DS ++ +
Sbjct: 155 EGDLYSLLIAEAYPEDSGTYSVNATN 180
Score = 34.7 bits (80), Expect = 0.037
Identities = 27/182 (14%), Positives = 50/182 (27%), Gaps = 63/182 (34%)
Query: 199 EDIKLPCLTVGVPAPEIIW----------KTYHIRI------------------------ 224
G P PE+ W ++I
Sbjct: 21 STATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSL 80
Query: 225 VAENEIGSSEPSDTVTILTAEEAPS--GPPTHIKVEATDQNTL--KVSWSPPERDHWNGV 280
A N G + + + + P+ + V Q L +V+ P +
Sbjct: 81 KATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKF--- 137
Query: 281 IQGYYVGYKETSTDKPFLFETVDFS-KEEGKEHHLTLSSLK-----TYTQYSVVVQALNK 334
Y++ + ++DF +EG + L ++ TY+ V A N
Sbjct: 138 -------YRD---GAE-IQSSLDFQISQEGDLYSLLIAEAYPEDSGTYS-----VNATNS 181
Query: 335 LG 336
+G
Sbjct: 182 VG 183
Score = 31.6 bits (72), Expect = 0.42
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 500 KNDRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
K + P + T ++L G+P P + +
Sbjct: 98 KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFY 138
Score = 28.9 bits (65), Expect = 3.0
Identities = 5/19 (26%), Positives = 6/19 (31%)
Query: 521 EDIKLPCLTVGVPAPEIIW 539
G P PE+ W
Sbjct: 21 STATFEAHISGFPVPEVSW 39
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 67.1 bits (164), Expect = 5e-13
Identities = 33/171 (19%), Positives = 56/171 (32%), Gaps = 34/171 (19%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEIL 107
+ P F+ +LRN R + L C+ G KPI + W K + +Y I+E
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPI-VKWYRQGKEIIA-DGLKYRIQEF-- 57
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
G L I D+ ++ A+ N V+ + ++
Sbjct: 58 KGGYHQ-LIIASVTDDDATVYQV--------------RAT------NQGGSVSGTASL-- 94
Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
V + +P + A E + + G P P I W+
Sbjct: 95 -----EVEVPAKIHLPKTLEGMGA-VHALRGEVVSIKIPFSGKPDPVITWQ 139
Score = 50.9 bits (122), Expect = 2e-07
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
P+ + + RGE ++ G+ I W +D + Y +
Sbjct: 104 LPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN--NGHYQVIVT---RS 158
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQ 135
S + ER D+ + K++
Sbjct: 159 FTSLVFPNGVERKDAGFYVVCAKNR 183
Score = 30.8 bits (70), Expect = 0.68
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
A E + + G P P I W+
Sbjct: 113 AVHALRGEVVSIKIPFSGKPDPVITWQ 139
Score = 28.9 bits (65), Expect = 3.0
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIW 539
N Y + L C G P P + W
Sbjct: 13 NLNVRYQSNATLVCKVTGHPKPIVKW 38
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 64.3 bits (157), Expect = 5e-13
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
+ + PS P+ +VE +T +V + PE I Y ++ +
Sbjct: 2 SHMDTPS-SPSIDQVEPYS-STAQVQFDEPEATG-GVPILKYKAEWRAVGEEV--WHSKW 56
Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
+KE E +T+ LK T Y+V + ALN G G +S + T
Sbjct: 57 YDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102
Score = 37.0 bits (86), Expect = 0.002
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILT 243
TY +R+ A N G E S T
Sbjct: 76 ETTYAVRLAALNGKGLGEISAASEFKT 102
Score = 32.4 bits (74), Expect = 0.093
Identities = 10/53 (18%), Positives = 18/53 (33%)
Query: 124 DSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTL 176
++ + K +S + GLK + Y + A G G+ S
Sbjct: 48 GEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 100
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 68.8 bits (167), Expect = 5e-13
Identities = 35/209 (16%), Positives = 69/209 (33%), Gaps = 23/209 (11%)
Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
+++ +RI AE E +S + + +A GPP + +EA D + + SP +D
Sbjct: 70 VYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPP-EVHLEAED-KAIVIHISPGTKD 126
Query: 276 H----WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA 331
+G+ Y + + S+ E + L T Y + V+A
Sbjct: 127 SVMWALDGLSFTYSLVIWKNSSGVEERIEN--------IYSRHKIYKLSPETTYCLKVKA 178
Query: 332 LNKLGP--GPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGY 389
G S T PP++ + +Q + W +
Sbjct: 179 ALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSV-QNQNYVLKWDYTY--ANMTFQVQW 235
Query: 390 KVVY---GPSDTWYGDPKTDICTDIRASW 415
+ P + Y + C +++ +
Sbjct: 236 LHAFLKRNPGNHLYKWKQIPDCENVKTTQ 264
Score = 51.5 bits (122), Expect = 3e-07
Identities = 25/135 (18%), Positives = 42/135 (31%), Gaps = 6/135 (4%)
Query: 217 WKTYHIRIVAENEIGS--SEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPER 274
TY +++ A S I T E PP +I+V +QN + + W
Sbjct: 169 ETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV-LKWDYTYA 227
Query: 275 DHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSS-LKTYTQYSVVVQALN 333
+ + + + + E K + Y + VQA +
Sbjct: 228 N--MTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASD 285
Query: 334 KLGPGPMSEEVKQYT 348
SEE+K T
Sbjct: 286 GNNTSFWSEEIKFDT 300
Score = 47.2 bits (111), Expect = 7e-06
Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 9/173 (5%)
Query: 248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
P P ++V+ D N + + W+ + N + Y++T D
Sbjct: 3 PLKSPQKVEVDIIDDNFI-LRWNRSDESVGNVT---FSFDYQKTGMDNWIKLSGCQNITS 58
Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTS 367
+ + + L Y + + ++A + E PP+ + +
Sbjct: 59 --TKCNFSSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKA 115
Query: 368 QTIRVS--WVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSP 418
I +S + +G+ Y +V + + + +I + + +SP
Sbjct: 116 IVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSP 168
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 68.7 bits (168), Expect = 5e-13
Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 63/239 (26%)
Query: 43 PPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
L S P ++ + + R + + C A G I W + +DP + N
Sbjct: 100 REDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNG--- 156
Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
R + L +G L I+ +E D + C A+
Sbjct: 157 RIKQLRSGA---LQIESSEETDQGKYEC-----------------------------VAT 184
Query: 163 TNIGEGQPSKNVTLSPSNR-VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--- 218
+ G S L + V R + + ++ + C+ VG P P + W
Sbjct: 185 NSAGVRY-SSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGA 243
Query: 219 ------------TYHIRI-----------VAENEIGSSEPSDTVTILTAEEAPSGPPTH 254
+ + VA + +G E +T+ + +A + H
Sbjct: 244 EDLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHHHH 302
Score = 62.9 bits (153), Expect = 5e-11
Identities = 45/268 (16%), Positives = 77/268 (28%), Gaps = 73/268 (27%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
PP F + ++Q G + C+A G+ + WN K+++ S TI +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN--SQRFETIEFDESAG 62
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
VL ++ D ++ C A ++GE
Sbjct: 63 AVLRIQPLRTPR--DENVYECV-----------------------------AQNSVGEIT 91
Query: 170 PSKNVTLSPSNRVPARIASFND---NFTATYTEDIKLPCLTVGVPAPEIIWK-------- 218
+T+ +++P+ + + T + C G P PEI W
Sbjct: 92 VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDP 151
Query: 219 -TYHIRI-----------------------VAENEIGSSEPSD-TVTILTAEEAP--SGP 251
+ RI VA N G S + + AP S
Sbjct: 152 SASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSIL 211
Query: 252 PTHIKVEATDQNTL--KVSWSPPERDHW 277
P ++ + SP W
Sbjct: 212 PMSHEIMPGGNVNITCVAVGSPMPYVKW 239
Score = 32.1 bits (73), Expect = 0.39
Identities = 7/37 (18%), Positives = 9/37 (24%)
Query: 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
P R + C G P P + W
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWN 41
Score = 30.9 bits (70), Expect = 0.88
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
V R + + ++ + C+ VG P P + W
Sbjct: 203 NVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWM 240
Score = 28.6 bits (64), Expect = 4.8
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
T + C G P PEI W
Sbjct: 117 LKVVERTRTATMLCAASGNPDPEITWF 143
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 69.7 bits (169), Expect = 6e-13
Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 18/143 (12%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
Y +R+ A + +S S+ + T +A PP + + ++ + P++
Sbjct: 280 IYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPV-FNIRSLS-DSFHIYIGAPKQSGNT 337
Query: 279 GVIQG----YYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNK 334
VIQ Y + + E +++ K K+ +T+ +LK T Y V +A
Sbjct: 338 PVIQDYPLIYEIIFWENTSNAER--------KIIEKKTDVTVPNLKPLTVYCVKARAHTM 389
Query: 335 LG----PGPMSEEVKQYTAEGTP 353
S+ V + T G
Sbjct: 390 DEKLNKSSVFSDAVCEKTKPGNT 412
Score = 65.4 bits (158), Expect = 1e-11
Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 6/179 (3%)
Query: 217 WKTYHIRIVAENEIGS--SEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPER 274
TY +++ A S I T E PP +I+V +QN + + W
Sbjct: 173 ETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV-LKWDYTYA 231
Query: 275 DHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNK 334
+ V Q + K + + ++ + + + ++ Y + VQA +
Sbjct: 232 NMTFQV-QWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDG 290
Query: 335 LGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
SEE+K T PP S + + +P VI+ Y ++Y
Sbjct: 291 NNTSFWSEEIKFDTEIQAFLLPP--VFNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLIY 347
Score = 60.8 bits (146), Expect = 5e-10
Identities = 35/202 (17%), Positives = 63/202 (31%), Gaps = 11/202 (5%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
++ +RI AE E +S + + +A GPP + +EA D + + SP +D
Sbjct: 75 YEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPP-EVHLEAED-KAIVIHISPGTKDS 131
Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
+ G Y E E + L T Y + V+A
Sbjct: 132 VMWALDGLSFTYSLVIWKNSSGVEERI----ENIYSRHKIYKLSPETTYCLKVKAALLTS 187
Query: 337 --PGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKV-VY 393
G S T PP++ + + + W V +
Sbjct: 188 WKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV-LKWDYTYANMTFQVQWLHAFLKR 246
Query: 394 GPSDTWYGDPKTDICTDIRASW 415
P + Y + C +++ +
Sbjct: 247 NPGNHLYKWKQIPDCENVKTTQ 268
Score = 50.8 bits (120), Expect = 7e-07
Identities = 28/255 (10%), Positives = 76/255 (29%), Gaps = 13/255 (5%)
Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
P ++V+ D N + + W+ + N + Y++T D
Sbjct: 10 SPQKVEVDIIDDNFI-LRWNRSDESVGNVT---FSFDYQKTGMDNWIKLSGCQNITST-- 63
Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTI 370
+ + + L Y + + ++A + E PP+ + + I
Sbjct: 64 KCNFSSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVI 122
Query: 371 RVSWVSP--PLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIK 428
+S + + +G+ Y +V + + + +I + + +SP +K
Sbjct: 123 HISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSP---ETTYCLK 179
Query: 429 GYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQGRGYLVPRGGPPPCPGSDETL 488
+ P + E+ Q + Y++ + + +
Sbjct: 180 VKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVL-KWDYTYANMTFQVQ 238
Query: 489 YSRHRGESDKCKNDR 503
+ + + +
Sbjct: 239 WLHAFLKRNPGNHLY 253
Score = 28.8 bits (63), Expect = 5.2
Identities = 25/201 (12%), Positives = 52/201 (25%), Gaps = 10/201 (4%)
Query: 53 EFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIR----EEILP 108
+ +K++ + V + + + Y ++ +
Sbjct: 175 TYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMT 234
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
V + + G+ +I + + +K Y+ V AS
Sbjct: 235 FQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTS 294
Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTE-DIKLPCLTVGVPAPEIIWKTYHIRIV-- 225
S+ + + FN + I P + P + Y I
Sbjct: 295 FWSEEIKFDTEIQAFLLPPVFNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWEN 354
Query: 226 ---AENEIGSSEPSDTVTILT 243
AE +I + TV L
Sbjct: 355 TSNAERKIIEKKTDVTVPNLK 375
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 66.6 bits (163), Expect = 6e-13
Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 36/172 (20%)
Query: 47 LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
+S P ++++ T++ GE + L C+ G I W K L +Y ++
Sbjct: 3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKEL--IQSRKY----KM 56
Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
+G L++ E+ D ++TC N + V S+ +
Sbjct: 57 SSDGRTHTLTVMTEEQEDEGVYTCIAT--------------------NEVGEVETSSKL- 95
Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
+ +P + + + ++L + +G P P + W
Sbjct: 96 ------LLQATPQFHPGYPL---KEKYYGAVGSTLRLHVMYIGRPVPAMTWF 138
Score = 40.8 bits (96), Expect = 4e-04
Identities = 13/90 (14%), Positives = 23/90 (25%), Gaps = 10/90 (11%)
Query: 50 APPEFEIKLR---NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
A P+F G L G + W K L T I
Sbjct: 99 ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQN--SENIT----I 152
Query: 107 LPNGVLSDLSIKR-TERGDSALFTCEIKSQ 135
+ L +K + + + ++ +
Sbjct: 153 ENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182
Score = 33.1 bits (76), Expect = 0.15
Identities = 33/185 (17%), Positives = 55/185 (29%), Gaps = 56/185 (30%)
Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIW----------KTYHI---------RI-------- 224
+ T E +L C VG P P+I W + Y + +
Sbjct: 16 DVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDE 75
Query: 225 -----VAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTL----KVSWSPPERD 275
+A NE+G E S + + + G P K +TL P
Sbjct: 76 GVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAM 135
Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFS-KEEGKEHHLTLSSLKTYT---QYSVVVQA 331
W + K L + + + + HL + +++ T +Y V
Sbjct: 136 TW----------FHG---QKL-LQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQ--L 179
Query: 332 LNKLG 336
N G
Sbjct: 180 SNVFG 184
Score = 31.2 bits (71), Expect = 0.65
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 513 DNFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ + ++L + +G P P + W
Sbjct: 111 EKYYGAVGSTLRLHVMYIGRPVPAMTWF 138
Score = 28.1 bits (63), Expect = 5.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIW 539
+ T E +L C VG P P+I W
Sbjct: 16 DVTTKLGEAAQLSCQIVGRPLPDIKW 41
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 64.4 bits (157), Expect = 6e-13
Identities = 18/111 (16%), Positives = 28/111 (25%), Gaps = 11/111 (9%)
Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
+ PP H+ + +V W ++ V Y +
Sbjct: 6 SGLAPPRHLGFSDVSHDAARVFWEGA-----PRPVRLVRVTYVSSEGGHSGQT-EAP--- 56
Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
G L L + T Y+V V L G +P P
Sbjct: 57 --GNATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSSGP 105
Score = 40.1 bits (94), Expect = 2e-04
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 352 TPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
+ PP+ + ++ RV W P ++ +V Y S+
Sbjct: 6 SGLAPPRHLGFSDVSHDAARVFWEGAP-----RPVRLVRVTYVSSE 46
Score = 35.5 bits (82), Expect = 0.007
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
TY +R+ G S +PS P+
Sbjct: 72 TYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSSGPS 106
Score = 30.1 bits (68), Expect = 0.51
Identities = 5/41 (12%), Positives = 7/41 (17%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS 171
+ + L Y VT G
Sbjct: 49 HSGQTEAPGNATSAMLGPLSSSTTYTVRVTCLYPGGGSSTL 89
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 67.0 bits (163), Expect = 6e-13
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 9/128 (7%)
Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEAT-DQNTLKVSWSPPER 274
+ Y + I + +GS + S +L PP+ +K E T + LK+SW P
Sbjct: 78 LLSGYTMWIRINHSLGSLD-SPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVF 136
Query: 275 DHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNK 334
+Q + + Y + + + V + K ++L Y+V V+
Sbjct: 137 --PENNLQ-FQIRYGLSGKEVQWKMYEV----YDAKSKSVSLPVPDLCAVYAVQVRCKRL 189
Query: 335 LGPGPMSE 342
G G S
Sbjct: 190 DGLGYWSN 197
Score = 38.5 bits (89), Expect = 0.002
Identities = 13/124 (10%), Positives = 28/124 (22%), Gaps = 6/124 (4%)
Query: 261 DQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE----EGKEHHLTL 316
+ WS + K+ +
Sbjct: 14 YLTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIF 73
Query: 317 SSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCT-TLTSQTIRVSWV 375
+ + Y++ ++ + LG S PP T+ +++SW
Sbjct: 74 QPIFLLSGYTMWIRINHSLGSLD-SPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWE 132
Query: 376 SPPL 379
P
Sbjct: 133 KPVF 136
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 68.4 bits (166), Expect = 7e-13
Identities = 40/319 (12%), Positives = 87/319 (27%), Gaps = 34/319 (10%)
Query: 56 IKLRNQTSRRGEPSVLQCEAKGEKPIG-----ILWNMNNKRLDPKSDNRYTIREEILPNG 110
I + G+P C K ILW + + ++ +
Sbjct: 5 ISVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGR------QQRLSDGT 58
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
S +++ + L + +G + +
Sbjct: 59 QESIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLIC 118
Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPA-------PEIIWKTYHIR 223
+ SF D L C+ + ++++ I
Sbjct: 119 QWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIW 178
Query: 224 IVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEAT------DQNTLKVSWSPPERDHW 277
+ AEN +G+S S + + + PP ++ + L++SW P +
Sbjct: 179 VQAENALGTSM-SPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLH 237
Query: 278 NGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGP 337
Q + +K + + + L L T Y++ ++ + P
Sbjct: 238 I--NQKCELRHKPQRGEASWALVGP----LPLEALQYELCGLLPATAYTLQIRCIRWPLP 291
Query: 338 GPMSE---EVKQYTAEGTP 353
G S+ ++ T E
Sbjct: 292 GHWSDWSPSLELRTTERAA 310
Score = 39.5 bits (91), Expect = 0.002
Identities = 23/174 (13%), Positives = 50/174 (28%), Gaps = 12/174 (6%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
G+S L A P+ P + ++L W P H + + +
Sbjct: 82 GNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTS---FTLKSFK 138
Query: 291 TSTDKPFLFETVDFSKEEGKEH--HLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
+ + +++ + + + L Y + VQA N LG +
Sbjct: 139 SRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPM 198
Query: 349 AEGTPEQPPQ-----DNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
E P + +++SW + + ++ + P
Sbjct: 199 DVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQ--PGLHINQKCELRHKPQR 250
Score = 28.4 bits (62), Expect = 5.5
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 217 WKTYHIRIVAENEIGS---SEPSDTVTILTAEEAPSG 250
Y ++I S+ S ++ + T E A +
Sbjct: 276 ATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAAAP 312
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 62.8 bits (153), Expect = 2e-12
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
PT ++V ++ VSW+PP + I GY + Y ++ TV
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPP-----SATITGYRITYTPSNGPGEPKELTVP-----P 52
Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
+T++ L +Y V V AL P
Sbjct: 53 SSTSVTITGLTPGVEYVVSVYALKDNQESP 82
Score = 36.6 bits (85), Expect = 0.002
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
P D T +T +I VSW P + I GY++ Y PS+
Sbjct: 4 APTDLQVTNVTDTSITVSWTPP-----SATITGYRITYTPSNG 41
Score = 32.0 bits (73), Expect = 0.11
Identities = 7/36 (19%), Positives = 10/36 (27%), Gaps = 4/36 (11%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTH 254
Y + + A + S P T T H
Sbjct: 67 EYVVSVYALKDNQESPPL-VGTQTT---GGHHHHHH 98
Score = 32.0 bits (73), Expect = 0.11
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS 171
E K + + +GL Y+ V A + E P
Sbjct: 44 EPKELTVPPSSTSVTITGLTPGVEYVVSVYALKDNQESPPL 84
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 63.4 bits (154), Expect = 2e-12
Identities = 28/116 (24%), Positives = 40/116 (34%), Gaps = 14/116 (12%)
Query: 249 SGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEE 308
S P ++V A +L +SW G Q Y + Y ET + P TV
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSG-----RGSYQYYRITYGETGGNSPVQEFTVP----- 53
Query: 309 GKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEG----TPEQPPQDN 360
G H T+S LK Y++ V A+ P + T P +
Sbjct: 54 GPVHTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQH 109
Score = 37.2 bits (86), Expect = 0.002
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 351 GTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
G + P+D T ++ +SW S G + Y++ YG +
Sbjct: 2 GVSD-VPRDLEVVAATPTSLLISWDSGR-----GSYQYYRITYGETG 42
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 67.2 bits (164), Expect = 2e-12
Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 36/168 (21%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
F+ Q + GE +V+ C+ P I+W + + K D R+ +L N
Sbjct: 99 QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI----VLSN 154
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
L I+ ++ D + CE
Sbjct: 155 NY---LQIRGIKKTDEGTYRCE-----------------------------GRILARGEI 182
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
K++ + + + N TA + + L C G P P + W
Sbjct: 183 NFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSW 230
Score = 63.0 bits (153), Expect = 4e-11
Identities = 26/171 (15%), Positives = 45/171 (26%), Gaps = 42/171 (24%)
Query: 52 PEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
+ +I GE C+ G+ K I W N + R ++ +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
L+I D+ ++ C + G
Sbjct: 63 T---LTIYNANIDDAGIYKCV-----------------------------VTAEDGTQS- 89
Query: 171 SKNVTLSPSNRVPARIASFND---NFTATYTEDIKLPCLTVGVPAPEIIWK 218
V + + ++ F + ED + C V P IIWK
Sbjct: 90 EATVNVK----IFQKL-MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWK 135
Score = 48.7 bits (116), Expect = 2e-06
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 50 APPEFEI--KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
PP + + N T+ G+ L C+A G + W + + ++ + +
Sbjct: 193 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN--EEEDDEKHIFS 250
Query: 108 PNGVLSDLSIKRTERGDSALFTC 130
+ S+L+I+ ++ D A + C
Sbjct: 251 DDS--SELTIRNVDKNDEAEYVC 271
Score = 31.4 bits (71), Expect = 0.63
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIW 539
N TA + + L C G P P + W
Sbjct: 205 NATANLGQSVTLVCDADGFPEPTMSW 230
Score = 29.5 bits (66), Expect = 2.8
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 521 EDIKLPCLTVGVPAPEIIWK 540
ED + C V P IIWK
Sbjct: 116 EDAVIVCDVVSSLPPTIIWK 135
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 65.6 bits (160), Expect = 2e-12
Identities = 37/173 (21%), Positives = 57/173 (32%), Gaps = 38/173 (21%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
PP F +QT G + C+A G+ I+WN K++ I +
Sbjct: 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN--QRFEVI---EFDD 59
Query: 110 GVLSDLSIKRTERG-DSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
G S L I+ D A++ C AS N+GE
Sbjct: 60 GSGSVLRIQPLRTPRDEAIYEC-----------------------------VASNNVGEI 90
Query: 169 QPSKNVTLSPSNRVPARIASFND---NFTATYTEDIKLPCLTVGVPAPEIIWK 218
S +T+ +++P + + T + C G P PEI W
Sbjct: 91 SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWF 143
Score = 57.9 bits (140), Expect = 8e-10
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 3/85 (3%)
Query: 47 LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
+ P ++ + + R + + C A G I W + +D ++N +
Sbjct: 104 IPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRS 163
Query: 107 LPNGVLSDLSIKRTERGDSALFTCE 131
G L I+++E D + C
Sbjct: 164 ESIGA---LQIEQSEESDQGKYECV 185
Score = 34.0 bits (78), Expect = 0.079
Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 34/96 (35%)
Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIWK--------------------TYHIRI------- 224
+ T C G P P+I+W +RI
Sbjct: 15 DQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPR 74
Query: 225 -------VAENEIGSSEPSDTVTILTAEEAPSGPPT 253
VA N +G S +T+L ++ P G PT
Sbjct: 75 DEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPT 110
Score = 30.9 bits (70), Expect = 0.80
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
T + C G P PEI W
Sbjct: 117 LKVVERTRTATMLCAASGNPDPEITWF 143
Score = 29.0 bits (65), Expect = 2.8
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIW 539
+ T C G P P+I+W
Sbjct: 15 DQTGVSGGVASFICQATGDPRPKIVW 40
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 68.8 bits (168), Expect = 2e-12
Identities = 53/325 (16%), Positives = 91/325 (28%), Gaps = 85/325 (26%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
PP + +T G L+C A G I W ++ K++ +++RY + + +
Sbjct: 426 RFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKI--ANNDRYQVGQYVT 483
Query: 108 PNG-VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
NG V+S L+I D L+ C A + +G
Sbjct: 484 VNGDVVSYLNITSVHANDGGLYKC-----------------------------IAKSKVG 514
Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK-------- 218
+ S + + I E + + C G P I+W+
Sbjct: 515 VAEHSAKLNV----YGLPYIRQMEKK-AIVAGETLIVTCPVAGYPIDSIVWERDNRALPI 569
Query: 219 ----------TYHIRIV------------AENEIGSSEPSDTVTILTAEEAPSGPPTHIK 256
T I V A+N+ G S ++ + P +
Sbjct: 570 NRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSA-RGSLEVQVMVLPRIIPFAFEE 628
Query: 257 VEATDQNTLKVSWS-----PPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKE 311
A L + S P W + L T G
Sbjct: 629 GPAQVGQYLTLHCSVPGGDLPLNIDW----------TLDGQAISEDLGITTSRVGRRG-- 676
Query: 312 HHLTLSSLKTYTQYSVVVQALNKLG 336
LT+ +++ + A N G
Sbjct: 677 SVLTIEAVEASHAGNFTCHARNLAG 701
Score = 62.6 bits (152), Expect = 2e-10
Identities = 32/188 (17%), Positives = 51/188 (27%), Gaps = 39/188 (20%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEIL 107
P ++ G+ L C G P+ I W ++ + + D T
Sbjct: 617 VLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISE--DLGITTSRVGR 674
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
VL+ I+ E + FTC A G
Sbjct: 675 RGSVLT---IEAVEASHAGNFTC-----------------------------HARNLAGH 702
Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAE 227
Q + + + VP R + D K+ C G P P++ WK E
Sbjct: 703 QQFTTPLNV----YVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGE 758
Query: 228 NEIGSSEP 235
+
Sbjct: 759 YKDLKKSD 766
Score = 62.6 bits (152), Expect = 2e-10
Identities = 35/266 (13%), Positives = 66/266 (24%), Gaps = 91/266 (34%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
AP +I QT G P+V C+ G + W + K +
Sbjct: 342 APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV----------- 390
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
L I+ ++ D ++ C + +
Sbjct: 391 -----LRIESVKKEDKGMYQCF-----------------------------VRNDRESAE 416
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------TYH 221
S + L P I T + L C+ G P PEI W+
Sbjct: 417 ASAELKLGGRFDPP-VIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDR 475
Query: 222 IRI-----------------------------VAENEIGSSEPSDTVTILTA-------- 244
++ +A++++G +E S + +
Sbjct: 476 YQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEK 535
Query: 245 EEAPSGPPTHIKVEATDQNTLKVSWS 270
+ +G + + W
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWE 561
Score = 62.3 bits (151), Expect = 3e-10
Identities = 29/179 (16%), Positives = 60/179 (33%), Gaps = 32/179 (17%)
Query: 45 LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAK---GEKPIGILWNMNNKRLDPKSDNRYT 101
+ + +E + + RG +V++C + + W+ + + Y
Sbjct: 132 HVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGA-EYD 190
Query: 102 IREEILPNGVLSDLSIKRTERGDSA-LFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVT 160
+ +LP+G +L I+ D + C K + +T
Sbjct: 191 GKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHR-----------------------LT 224
Query: 161 ASTNIGEGQPSKNVTLSPSNRVPARIA-SFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
T + + +T S+ VP ++ + D T + + + L C G P P W
Sbjct: 225 GETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWY 283
Score = 54.2 bits (130), Expect = 9e-08
Identities = 11/85 (12%), Positives = 31/85 (36%), Gaps = 3/85 (3%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
PP + ++ ++ +G + ++C+A G + W + + +
Sbjct: 713 VPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEE 772
Query: 110 GVLSDLSIKRTERGDSALFTCEIKS 134
G L + ++ + + CE +
Sbjct: 773 G---TLHVDNIQKTNEGYYLCEAIN 794
Score = 52.6 bits (126), Expect = 2e-07
Identities = 40/262 (15%), Positives = 61/262 (23%), Gaps = 71/262 (27%)
Query: 43 PPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
P+ + K +T L C A+G W + K
Sbjct: 240 EPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND 299
Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
R + +G L IK DS + C + +
Sbjct: 300 RVK-QVSGT---LIIKDAVVEDSGKYLCVVNNS--------------------------- 328
Query: 163 TNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW----- 217
G S L+ P T + C G P + W
Sbjct: 329 ----VGGESVETVLTV--TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK 382
Query: 218 ------KTYHIRIV-----------AENEIGSSEPSDTVTILTAEEAPS----------- 249
I V N+ S+E S + + + P
Sbjct: 383 AIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETME 442
Query: 250 -GPPTHIKVEATDQNTLKVSWS 270
GP +K A T ++SW
Sbjct: 443 PGPSVFLKCVAGGNPTPEISWE 464
Score = 48.4 bits (115), Expect = 5e-06
Identities = 41/266 (15%), Positives = 73/266 (27%), Gaps = 87/266 (32%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
P ++ + GE ++ C G I+W +N+ L ++++ PN
Sbjct: 526 GLPYIR-QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINR------KQKVFPN 578
Query: 110 GVLSDLSIKRTER-GDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
G L I+ ER D A +TC A G
Sbjct: 579 G---TLIIENVERNSDQATYTC-----------------------------VAKNQEGY- 605
Query: 169 QPSKNVTLSPSNRVPARIASF-NDNFTATYTEDIKLPCLTVGVPAP-EIIW--------- 217
++ + V RI F + A + + L C G P I W
Sbjct: 606 SARGSLEVQV--MVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISE 663
Query: 218 -----------KTYHIRI-------------VAENEIGSSEPSDTVTILTA--------- 244
+ + I A N G + + + +
Sbjct: 664 DLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTD 723
Query: 245 EEAPSGPPTHIKVEATDQNTLKVSWS 270
+ G ++ +A +V+W
Sbjct: 724 KAFAQGSDAKVECKADGFPKPQVTWK 749
Score = 42.6 bits (100), Expect = 3e-04
Identities = 22/182 (12%), Positives = 44/182 (24%), Gaps = 43/182 (23%)
Query: 44 PLLLSSAPPEFEIKLRNQTS-RRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
P P F + N+ + ++C+A G I+W ++
Sbjct: 31 PPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ- 89
Query: 103 REEILPNGVLSDLSIK---RTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYV 159
I +G L + + + ++ C
Sbjct: 90 ---ISSDGKLVFPPFRAEDYRQEVHAQVYAC----------------------------- 117
Query: 160 TASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCL---TVGVPAPEII 216
A G S++V + V + + + CL V +
Sbjct: 118 LARNQFGSII-SRDVHVRAV--VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVS 174
Query: 217 WK 218
W
Sbjct: 175 WH 176
Score = 32.2 bits (73), Expect = 0.46
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
VP R + D K+ C G P P++ WK
Sbjct: 712 YVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWK 749
Score = 31.1 bits (70), Expect = 1.2
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 501 NDRVPARIA-SFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ VP ++ + D T + + + L C G P P W
Sbjct: 243 SSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWY 283
Score = 30.3 bits (68), Expect = 1.7
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 158 YVTASTNIGEGQPSKNVTLSPSNRVPARIAS-FNDNFTATYTEDIKLPCLTVGVPAPEII 216
+ + G + +++ + + + ++ C G P PEII
Sbjct: 14 FAAVALIA-CGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEII 72
Query: 217 W 217
W
Sbjct: 73 W 73
Score = 30.3 bits (68), Expect = 1.8
Identities = 6/36 (16%), Positives = 8/36 (22%)
Query: 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
P T + C G P + W
Sbjct: 342 APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 377
Score = 30.3 bits (68), Expect = 1.8
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 505 PARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
P I T + L C+ G P PEI W+
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWE 464
Score = 29.1 bits (65), Expect = 4.0
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 501 NDRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
+ + P + + + + ++ C G P PEIIW
Sbjct: 35 DQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIW 73
Score = 28.4 bits (63), Expect = 7.4
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
E + + C G P I+W+
Sbjct: 535 KKAIVAGETLIVTCPVAGYPIDSIVWE 561
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 62.4 bits (152), Expect = 3e-12
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 11/115 (9%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
+ P P + L + WS P + Y + +E ++ F
Sbjct: 3 SGSSGP-SMPASPVLTKAGITWLSLQWSKPSGTP-SDEGISYILEMEEETSGYGFK---- 56
Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
K +G++ T+ +L+ T+Y V A N G SE V+ T P+ P
Sbjct: 57 --PKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT---CPDSGP 106
Score = 41.2 bits (97), Expect = 7e-05
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGP 251
Y +++A N G S PS+ V T ++
Sbjct: 74 STKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108
Score = 33.1 bits (76), Expect = 0.044
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 140 QQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTL 176
+ + Y L++ Y F V A + G+ PS+ V
Sbjct: 62 EDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEF 98
Score = 30.0 bits (68), Expect = 0.54
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY--GPSDTWY 400
++ + P T + + W S P T + Y + S +
Sbjct: 2 SSGSSGPSMPASPVLTKAGITWLSLQW-SKPSGTPSDEGISYILEMEEETSGYGF 55
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 66.5 bits (161), Expect = 4e-12
Identities = 29/168 (17%), Positives = 44/168 (26%), Gaps = 20/168 (11%)
Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
P T++ V + T+ +W+PPE N + Y DK +
Sbjct: 6 PVTNLSVSVENLCTVIWTWNPPEGASSN-----CSLWYFSHFGDKQDKKIAPE------- 53
Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA-EGTPEQPPQDNTCTTLTSQT 369
L V Q P K + EG PE + C
Sbjct: 54 TRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSY 113
Query: 370 IRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVS 417
++ SW+ Y + Y K C +I
Sbjct: 114 MKCSWLPGR---NTSPDTNYTLYYWHR----SLEKIHQCENIFREGQY 154
Score = 58.4 bits (140), Expect = 1e-09
Identities = 28/181 (15%), Positives = 51/181 (28%), Gaps = 7/181 (3%)
Query: 219 TYHIRIVAENEIG-SSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHW 277
+ I E P T ++ + + +K SW P
Sbjct: 67 CLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNTSP 126
Query: 278 NGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGP 337
+ YY + + + G LT ++ Q+SV + + G
Sbjct: 127 DTNYTLYY--WHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGK 184
Query: 338 GPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
S + T+ P+ P + + + V W +P Y+V S
Sbjct: 185 IKPSFNIVPLTSRVKPDPP--HIKNLSFHNDDLYVQWENPQ--NFISRCLFYEVEVNNSQ 240
Query: 398 T 398
T
Sbjct: 241 T 241
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 61.3 bits (149), Expect = 4e-12
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
P + D +++K++W P G + Y V Y LF D G+
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESP-----QGQVSRYRVTYSSPEDGIHELFPAPD-----GE 53
Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
E L L+ ++Y+V V AL+
Sbjct: 54 EDTAELQGLRPGSEYTVSVVALHDDMESQ 82
Score = 37.8 bits (88), Expect = 0.001
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
P+ T + +I+++W SP G + Y+V Y +
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESP-----QGQVSRYRVTYSSPED 41
Score = 29.7 bits (67), Expect = 0.57
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEA 247
Y + +VA ++ S+P T TA A
Sbjct: 67 EYTVSVVALHDDMESQPL-IGTQSTAIPA 94
Score = 27.8 bits (62), Expect = 2.7
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 138 SSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS 171
++ T E GL+ Y V A + E QP
Sbjct: 51 DGEEDTAELQGLRPGSEYTVSVVALHDDMESQPL 84
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 64.4 bits (157), Expect = 4e-12
Identities = 35/177 (19%), Positives = 57/177 (32%), Gaps = 35/177 (19%)
Query: 45 LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
L PP + +GEP+ L C+A+G I W +R++ D+ +
Sbjct: 3 LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRS-HR 61
Query: 105 EILPNGVL--SDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
+LP+G L + R R D ++ C A
Sbjct: 62 MLLPSGSLFFLRIVHGRKSRPDEGVYVCV-----------------------------AR 92
Query: 163 TNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPC-LTVGVPAPEIIWK 218
+GE S + +L + + + E + C G P P I WK
Sbjct: 93 NYLGEAV-SHDASLEVA-ILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWK 147
Score = 56.4 bits (136), Expect = 3e-09
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 45 LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIR 103
L ++ +F + GEP+V++C+ +G I W + LD D R
Sbjct: 105 LEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDD-KDERI--- 160
Query: 104 EEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135
+ G L I T + D+ + C +
Sbjct: 161 --TIRGG---KLMITYTRKSDAGKYVCVGTNM 187
Score = 29.0 bits (65), Expect = 2.7
Identities = 11/37 (29%), Positives = 13/37 (35%)
Query: 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
P RI + + E L C G P P I W
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWY 44
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 61.2 bits (149), Expect = 6e-12
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 10/94 (10%)
Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
PP +IKV T V+W PP I+G V + + +
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPPI-----LPIEGILVTFGRKNDPSDETTVDLT-----SS 53
Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV 344
LTL++L+ T Y + + A N P
Sbjct: 54 ITSLTLTNLEPNTTYEIRIVARNGQQYSPPVSTT 87
Score = 36.2 bits (84), Expect = 0.003
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
PP + T +T T V+W P I+G V +G +
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPPI-----LPIEGILVTFGRKND 41
Score = 33.5 bits (77), Expect = 0.026
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 136 KISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS 171
++S + + L+ Y + A P
Sbjct: 49 DLTSSITSLTLTNLEPNTTYEIRIVARNGQQYSPPV 84
Score = 30.4 bits (69), Expect = 0.40
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 219 TYHIRIVAENEIGSSEPSDTV 239
TY IRIVA N S P T
Sbjct: 67 TYEIRIVARNGQQYSPPVSTT 87
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 67.5 bits (164), Expect = 6e-12
Identities = 36/249 (14%), Positives = 64/249 (25%), Gaps = 74/249 (29%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKS------------D 97
PE ++ + E L C A + W + P D
Sbjct: 549 RGPEITLQ-PDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLD 607
Query: 98 NRYTIREEILPNGV--LSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNY 155
+ + + N + + +K D + C
Sbjct: 608 TLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCL------------------------ 643
Query: 156 IFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEI 215
A + + L+ RV I +N T + E I++ C G P P+I
Sbjct: 644 -----AQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQI 698
Query: 216 IWK--------TYHIRI----------------------VAENEIGSSEPSDTVTILTAE 245
+W I + A + +G ++ I A+
Sbjct: 699 MWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 758
Query: 246 EAPSGPPTH 254
E + TH
Sbjct: 759 EKTNLERTH 767
Score = 63.6 bits (154), Expect = 9e-11
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 46 LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
+L P L NQT+ GE + C A G P I+W +N+ L D+ +++
Sbjct: 661 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE--DSGIVLKDG 718
Query: 106 ILPNGVLSDLSIKRTERGDSALFTCE 131
+L+I+R + D L+TC+
Sbjct: 719 N------RNLTIRRVRKEDEGLYTCQ 738
Score = 54.8 bits (131), Expect = 5e-08
Identities = 72/555 (12%), Positives = 123/555 (22%), Gaps = 155/555 (27%)
Query: 47 LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
A + + T + + V+ C L ++ NR +
Sbjct: 124 PFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRIS----W 179
Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
+I + + CE A N
Sbjct: 180 DSKKG---FTIPSYMISYAGMVFCE-----------------------------AKINDE 207
Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK-------- 218
Q + + R+ + S + + E + L C I +
Sbjct: 208 SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKH 267
Query: 219 ---------------------TYHIRI-------------VAENEIGSSEPSDTVTILTA 244
+ I A + + + + S V +
Sbjct: 268 QHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 327
Query: 245 EEAPSGPPTHIKVEATDQNTL----KVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFE 300
G VEAT + K PP W YK P
Sbjct: 328 PFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKW----------YKN---GIP---- 370
Query: 301 TVDFSKEEGKEHHLTLSSLK-----TYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQ 355
++ + H LT+ + YT V N + +E + +
Sbjct: 371 -LESNHTIKAGHVLTIMEVSERDTGNYT-----VILTNPIS-----KEKQSHVVSLVVYV 419
Query: 356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW----YGDPKTDICTDI 411
PPQ I + P+ + YG + T Y P I
Sbjct: 420 PPQ-----------IGEKSLISPVDS---------YQYGTTQTLTCTVYAIPPPHH---I 456
Query: 412 RASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQGRGY 471
W P + W + + + E K++
Sbjct: 457 HWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVST 516
Query: 472 LVPRGGPPPCPGSDETLY----SRHRGESDKCKNDRV--PARIASFNDNFTATYTEDIKL 525
LV + LY G ++ + V I D T E + L
Sbjct: 517 LV------IQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDM-QPTEQESVSL 569
Query: 526 PCLTVGVPAPEIIWK 540
C + W
Sbjct: 570 WCTADRSTFENLTWY 584
Score = 48.2 bits (114), Expect = 5e-06
Identities = 29/201 (14%), Positives = 54/201 (26%), Gaps = 36/201 (17%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
P I+ T + + C G++ + LW N + + T +
Sbjct: 31 LPRLSIQKDILTIKANTTLQITCR--GQRDLDWLW--PNNQSGSEQRVEVTECSD---GL 83
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
L+I + D+ + C + ++S Y S I
Sbjct: 84 FCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVY------------VQDYRSPFIASVSD 131
Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYH-IRIVAENE 229
V T + + +PCL + Y R V +
Sbjct: 132 QHGVV----------------YITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN 175
Query: 230 IGSSEPSDTVTILTAEEAPSG 250
S + TI + + +G
Sbjct: 176 RISWDSKKGFTIPSYMISYAG 196
Score = 45.5 bits (107), Expect = 4e-05
Identities = 21/187 (11%), Positives = 45/187 (24%), Gaps = 8/187 (4%)
Query: 52 PEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
E + + + G L C P I W + ++ P
Sbjct: 424 GEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYP-- 481
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
S++ + G+ + + + ++ A +G G+
Sbjct: 482 CEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGER 541
Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEI 230
+ + I D T E + L C + W + + +
Sbjct: 542 VISFHV----TRGPEITLQPDM-QPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVG 596
Query: 231 GSSEPSD 237
P
Sbjct: 597 ELPTPVC 603
Score = 34.0 bits (77), Expect = 0.16
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 501 NDRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
+RV I +N T + E I++ C G P P+I+W
Sbjct: 662 LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWF 701
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 64.5 bits (157), Expect = 6e-12
Identities = 30/184 (16%), Positives = 57/184 (30%), Gaps = 50/184 (27%)
Query: 44 PLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIR 103
PL P + ++ EP+ L C+ +G+ I W + + + + +
Sbjct: 2 PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRV- 60
Query: 104 EEILPNGVLS-DLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
+G L +++ + D + C A
Sbjct: 61 --QFKDGALFFYRTMQGKKEQDGGEYWC-----------------------------VAK 89
Query: 163 TNIGEGQPSKNVTLSPSNRVPARIASFNDNF-------TATYTEDIKLPCLTV-GVPAPE 214
+G+ S++ +L +IA D+F E L C G+P P
Sbjct: 90 NRVGQAV-SRHASL--------QIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPT 140
Query: 215 IIWK 218
+IW
Sbjct: 141 LIWI 144
Score = 54.5 bits (131), Expect = 1e-08
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 45 LLLSSAPPEFEIKLRNQTSRRGEPSVLQC-EAKGEKPIGILWNMNNKRLDPKSDNRYTI- 102
L ++ +F ++ ++ +GE ++L+C KG ++W + LD +
Sbjct: 102 LQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGAS 161
Query: 103 -REEILPNGVLSDLSIKRTERGDSALFTCE 131
R I+ G +L I E D + C
Sbjct: 162 SRVRIVDGG---NLLISNVEPIDEGNYKCI 188
Score = 29.4 bits (66), Expect = 2.3
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ E L C G P P I W
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEPTIEWF 44
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 61.3 bits (149), Expect = 6e-12
Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 13/108 (12%)
Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
P+ I+V+ T ++W PP + + G+ + Y +
Sbjct: 5 APSQIEVKDVTDTTALITWMPP-----SQPVDGFELTYGIKDVPGDRTTIDLT-----ED 54
Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPG-PMSEEVKQYTAEGTPEQPP 357
E+ ++ +LK T+Y V + + P E T +
Sbjct: 55 ENQYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFT--TGLAAALEHH 100
Score = 37.4 bits (87), Expect = 0.001
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
P +T T ++W+ P + + G+++ YG D
Sbjct: 5 APSQIEVKDVTDTTALITWMPP-----SQPVDGFELTYGIKDV 42
Score = 37.4 bits (87), Expect = 0.002
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTH 254
Y + +++ SS P+ T T A H
Sbjct: 68 EYEVSLISRRGDMSSNPA-KETFTTGLAAALEHHHH 102
Score = 31.2 bits (71), Expect = 0.20
Identities = 5/41 (12%), Positives = 13/41 (31%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS 171
+ + ++ + Y LK Y + + P+
Sbjct: 45 DRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGDMSSNPA 85
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 60.9 bits (147), Expect = 2e-11
Identities = 31/136 (22%), Positives = 42/136 (30%), Gaps = 19/136 (13%)
Query: 232 SSEPSDTVTILTAEEAPSGPPTHIKVEA-TDQNTLKVSWSPPERD---HWNGV-IQGYYV 286
S S V T P PP + V+A T++VSW PP NG + GY V
Sbjct: 1 GSSGSSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGV 60
Query: 287 ---GYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE 343
G + P + L L++ V V+ L+ G S
Sbjct: 61 YAKGQRVAEVIFP-----------TADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAV 109
Query: 344 VKQYTAEGTPEQPPQD 359
P P
Sbjct: 110 AAVPPELLVPPTPHPS 125
Score = 30.5 bits (68), Expect = 0.60
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 341 SEEVKQYTAEGTPEQPPQDNTCTTLTSQ-TIRVSWVSP---PLITANGV-IKGYKV 391
S V+ T P PPQD T + TIRVSW P P +NG + GY V
Sbjct: 5 SSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGV 60
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 59.7 bits (145), Expect = 2e-11
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
SS P FE+KL++ G P C G I W + K++ P + YTI+ +
Sbjct: 5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISP-KSDHYTIQRD-- 61
Query: 108 PNGVLSDLSIKRTERGDSALFTC 130
+G S L + D +T
Sbjct: 62 LDGTCS-LHTTASTLDDDGNYTI 83
Score = 28.5 bits (64), Expect = 2.1
Identities = 13/92 (14%), Positives = 22/92 (23%), Gaps = 34/92 (36%)
Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIWK-----------------------TYHIR----- 223
++ + C G P P+I W + H
Sbjct: 17 HYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLD 76
Query: 224 ------IVAENEIGSSEPSDTVTILTAEEAPS 249
I+A N G + + + PS
Sbjct: 77 DDGNYTIMAANPQGRISCTGRLMVQAVNSGPS 108
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 63.8 bits (155), Expect = 3e-11
Identities = 33/243 (13%), Positives = 62/243 (25%), Gaps = 61/243 (25%)
Query: 46 LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEK----------PIGILWNMNNKRLDPK 95
L+ A E +++ + + +Q A+G + + + W+ N +
Sbjct: 93 LVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY- 151
Query: 96 SDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNY 155
+R G L I D + E+ K Q+
Sbjct: 152 -SDRVKT----GVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQK------------TV 194
Query: 156 IFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEI 215
A + D T + + L C G P PE+
Sbjct: 195 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEV 254
Query: 216 IWK----------TYHIR-----------------------IVAENEIGSSEPSDTVTIL 242
W +++ +V +N+ GS TV++
Sbjct: 255 SWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314
Query: 243 TAE 245
E
Sbjct: 315 IPE 317
Score = 50.7 bits (121), Expect = 5e-07
Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 5/106 (4%)
Query: 30 FDPELLNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNN 89
+D + + T + G+ L C G+ P + W N
Sbjct: 201 YDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNE 260
Query: 90 KRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135
K L SD+ ++ E +I DS + +K++
Sbjct: 261 KAL--ASDDHCNLKFEAGRTAY---FTINGVSTADSGKYGLVVKNK 301
Score = 49.5 bits (118), Expect = 1e-06
Identities = 26/257 (10%), Positives = 69/257 (26%), Gaps = 67/257 (26%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRLDPKSDNRYTIREEILPN 109
P F L + + +L+C+ K I+W + + + D ++ +
Sbjct: 7 GPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISV--DEKHDF-----KD 58
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI-GEG 168
G+ + L I + D+ ++ +K + + + E
Sbjct: 59 GICT-LLITEFSKKDAGIYEVILK--------------------DDRGKDKSRLKLVDEA 97
Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK---------- 218
+ + + A +T +T V ++ W
Sbjct: 98 FKELMMEVCKKIALSATDLK----IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD 153
Query: 219 ---------TYHIRI-------------VAENEIGSSEPSDTVTILTAEEAPSGPPTHIK 256
++I + + + ++ +EA + +
Sbjct: 154 RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQ 213
Query: 257 VEATDQNTLKVSWSPPE 273
++N +V P+
Sbjct: 214 AAIAEKNRARVLGGLPD 230
Score = 36.0 bits (83), Expect = 0.022
Identities = 12/58 (20%), Positives = 17/58 (29%)
Query: 483 GSDETLYSRHRGESDKCKNDRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
DE R + + D T + + L C G P PE+ W
Sbjct: 200 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWL 257
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 59.7 bits (145), Expect = 4e-11
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 8/126 (6%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
GSS S + + P GPP +K+E + ++W+PP+ D N I GY + +
Sbjct: 1 GSSGSSGASIDIQIIDRP-GPPQIVKIEDVWGENVALTWTPPKDDG-NAAITGYTIQKAD 58
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
+ + F E T++ L +Y V + N G + K+
Sbjct: 59 KKSMEWFTV------IEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVI 112
Query: 351 GTPEQP 356
+
Sbjct: 113 ARDGKI 118
Score = 37.7 bits (88), Expect = 0.001
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
Y+ R+ +EN G SE +
Sbjct: 84 GNEYYFRVFSENMCGLSEDATMTKESAVIARD 115
Score = 30.4 bits (69), Expect = 0.57
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 140 QQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPAR 185
+ + + L Y F V + G + + T++ + V AR
Sbjct: 72 HRTSATITELVIGNEYYFRVFSENMCGLSEDA---TMTKESAVIAR 114
Score = 28.5 bits (64), Expect = 2.1
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 355 QPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY--GPSDTWY 400
PPQ + + + ++W +PP N I GY + S W+
Sbjct: 19 GPPQIVKIEDVWGENVALTW-TPPKDDGNAAITGYTIQKADKKSMEWF 65
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 59.5 bits (144), Expect = 4e-11
Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 14/114 (12%)
Query: 246 EAPSGPPT--HIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVD 303
EA P+ I + + + K+S + D I Y V Y+ + +L + V
Sbjct: 3 EASMREPSPPSIHGQPSSGKSFKLSITKQ--DDGGAPILEYIVKYRSKDKEDQWLEKKVQ 60
Query: 304 FSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
G + H+ L L+ Y V + A N+LG + P +P
Sbjct: 61 -----GNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS-----MPPKPN 104
Score = 39.4 bits (92), Expect = 3e-04
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTH 254
Y ++I A N +G SEP+ + H
Sbjct: 74 TMGYEVQITAANRLGYSEPTV-YEFSMPPKPNIIKDHH 110
Score = 36.0 bits (83), Expect = 0.005
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 133 KSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPAR 185
+K+ + L+ Y +TA+ +G +P+ +P +
Sbjct: 55 LEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPT-----VYEFSMPPK 102
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 59.5 bits (144), Expect = 4e-11
Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 232 SSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKET 291
S + + LTA P+ P ++ +T+ V W + I Y + Y
Sbjct: 3 SGSSGEGLDYLTA---PNPPSIREELCTASHDTITVHWISDD----EFSISSYELQYTIF 55
Query: 292 STDKPFLFETVDFSK----EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQY 347
+ F+ K++H T+ L++ T+Y +V+A+N+ G SE +
Sbjct: 56 TGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRN-SEPTRLK 114
Query: 348 TAEGTPEQPP 357
T + P
Sbjct: 115 TNSQPFKSGP 124
Score = 32.6 bits (74), Expect = 0.090
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
Y + A N+ GS + T + P+
Sbjct: 90 GTRYIFIVKAINQAGSRNSE-PTRLKTNSQPFKSGPS 125
Score = 29.9 bits (67), Expect = 0.78
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 140 QQMTYEASGLKKKQNYIFYVTASTNIGEGQPS 171
+Q Y GL+ YIF V A G
Sbjct: 78 KQNHYTVHGLQSGTRYIFIVKAINQAGSRNSE 109
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 61.4 bits (149), Expect = 4e-11
Identities = 34/221 (15%), Positives = 60/221 (27%), Gaps = 59/221 (26%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGE--KPIGILWNMNNKRLDPKSDNRYTIREEILP 108
P + + G+ VL C+ + W +N + D R R
Sbjct: 8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKR---RFVSQT 64
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
NG +L I E D ++C + S S K + +
Sbjct: 65 NG---NLYIANVEASDKGNYSCFVSS-----------PSITKSVFSKFIPLIPIPERTTK 110
Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------TY 220
++ + + A +++ L C +G P P+I W+ T
Sbjct: 111 PYPADIVVQFKDV------------YALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA 158
Query: 221 HIRI--------------------VAENEIGSSEPSDTVTI 241
I AEN G + + +
Sbjct: 159 EISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 45.3 bits (107), Expect = 1e-05
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 10/89 (11%)
Query: 43 PPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
P P + ++ ++ + G+ L+C A G I W + +
Sbjct: 105 PERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST------- 157
Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCE 131
E V L I + D ++ CE
Sbjct: 158 AEISTSGAV---LKIFNIQLEDEGIYECE 183
Score = 31.0 bits (70), Expect = 0.69
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
PA I + A +++ L C +G P P+I W+
Sbjct: 111 PYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWR 148
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 63.4 bits (154), Expect = 6e-11
Identities = 22/175 (12%), Positives = 45/175 (25%), Gaps = 24/175 (13%)
Query: 46 LLSSAPPEFEIKLRNQTSRRGEPSVLQCE-AKGEKPIGILWNMNNKRLDPKSD-NRYTIR 103
+ K +T G P L C I W DP +D + R
Sbjct: 95 FRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRR 154
Query: 104 EEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAST 163
P+G L + + + D + C K+ + + + E ++
Sbjct: 155 ITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKD--------- 205
Query: 164 NIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
+ + + + A + + C+ P +
Sbjct: 206 -------------NSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYF 247
Score = 59.2 bits (143), Expect = 2e-09
Identities = 28/171 (16%), Positives = 46/171 (26%), Gaps = 41/171 (23%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILP 108
P + + R P+VL+C +G + + W + K + + N
Sbjct: 5 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL----RKD 60
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
G L R + D + C A T G
Sbjct: 61 EGS---LVFLRPQASDEGHYQC-----------------------------FAETPAGVA 88
Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPC-LTVGVPAPEIIWK 218
S+ ++ + + T +L C L P P I WK
Sbjct: 89 S-SRVISFRKT--YLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWK 136
Score = 58.8 bits (142), Expect = 2e-09
Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 37/170 (21%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
P + ++ ++ G+ +++ C + N K ++ ++R T R
Sbjct: 210 KGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRIT-RHNRTS 268
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
L K T D ++TCE +G+
Sbjct: 269 GKR---LLFKTTLPEDEGVYTCE-----------------------------VDNGVGKP 296
Query: 169 QPSKNVTLSPSNRVPARIAS-FNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
Q ++ L+ + +D+ +PC G+PAP ++W
Sbjct: 297 Q-KHSLKLTV--VSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW 343
Score = 51.8 bits (124), Expect = 3e-07
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 50 APPEFEIKLRNQTS-RRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
+ P++E K ++G+ + C+ G ++W+ N K L S R T+ +
Sbjct: 307 SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL---SGGRATVTD---- 359
Query: 109 NGVLSDLSIKRTERGDSALFTCE 131
S L IK + GD + C
Sbjct: 360 ----SGLVIKGVKNGDKGYYGCR 378
Score = 32.6 bits (74), Expect = 0.37
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 513 DNFTATYTEDIKLPCLTVGVPAPEIIW 539
+D+ +PC G+PAP ++W
Sbjct: 317 KVIVVKQGQDVTIPCKVTGLPAPNVVW 343
Score = 30.3 bits (68), Expect = 1.6
Identities = 3/38 (7%), Positives = 10/38 (26%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ + + A + + C+ P +
Sbjct: 210 KGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYF 247
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 58.1 bits (141), Expect = 6e-11
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 3/89 (3%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
SS P L +Q G+ + E E ++W N L ++ + R
Sbjct: 5 SSGPVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQ-VMWMKNGVELTR--EDSFKARYRFK 61
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQK 136
+G L + D + +
Sbjct: 62 KDGKRHILIFSDVVQEDRGRYQVITNGGQ 90
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 58.6 bits (142), Expect = 6e-11
Identities = 22/93 (23%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
SS E + + T + E +V +CE EK W N + P R TI
Sbjct: 5 SSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRP--SKRITISHV-- 59
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
G L I D +T +S
Sbjct: 60 --GRFHKLVIDDVRPEDEGDYTFVPDGYALSLS 90
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 58.5 bits (142), Expect = 7e-11
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 6/86 (6%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
S+ P+ +Q R GE L + G +PI W K++ +
Sbjct: 4 GSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQE--SEHMKVENS-- 59
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIK 133
S L+I + +T ++
Sbjct: 60 --ENGSKLTILAARQEHCGCYTLLVE 83
Score = 37.3 bits (87), Expect = 0.002
Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 32/103 (31%)
Query: 183 PARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW----------KTYHIR--------- 223
+I F ++ E ++L G W + +
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66
Query: 224 -------------IVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
++ EN++GS + +T++ + P+G P+
Sbjct: 67 ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGTPS 109
Score = 28.4 bits (64), Expect = 2.5
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 505 PARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
+I F ++ E ++L G W
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTW 41
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 58.3 bits (141), Expect = 8e-11
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 45 LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
L PP + +GEP+ L C+A+G I W +R++ D+ +
Sbjct: 3 LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRS-HR 61
Query: 105 EILPNGVLSDLSIK--RTERGDSALFTCE 131
+LP+G L L I R R D ++ C
Sbjct: 62 MLLPSGSLFFLRIVHGRKSRPDEGVYVCV 90
Score = 29.4 bits (66), Expect = 1.0
Identities = 11/37 (29%), Positives = 13/37 (35%)
Query: 182 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
P RI + + E L C G P P I W
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWY 44
Score = 29.4 bits (66), Expect = 1.0
Identities = 11/37 (29%), Positives = 13/37 (35%)
Query: 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
P RI + + E L C G P P I W
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWY 44
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 58.1 bits (140), Expect = 1e-10
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 9/114 (7%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
+ + + V ++L+++W P G + + + S
Sbjct: 3 SGSSGSRPRLSQLSVTDVTTSSLRLNWEAPP-----GAFDSFLLRFGVPSPSTLEPHPRP 57
Query: 303 DFSKE---EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
+E G H L L++ T YS+ + L S + T G
Sbjct: 58 LLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKAD-SIQGTARTLSGPS 110
Score = 28.0 bits (62), Expect = 3.2
Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSG 250
Y + + ++ T T SG
Sbjct: 82 LYSLTLYGLRGPHKADSI-QGTARTLSGPSSG 112
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 62.2 bits (151), Expect = 1e-10
Identities = 41/264 (15%), Positives = 65/264 (24%), Gaps = 64/264 (24%)
Query: 51 PPEFEIKLRNQTS-RRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
EF + R+ G + C + W +N +D R R
Sbjct: 100 LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGR---RFVSQT 156
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
G +L I +TE D ++C S + + +
Sbjct: 157 TG---NLYIAKTEASDLGNYSCFATSHIDFITK---------------------SVFSKF 192
Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK---------- 218
P+ A F + A + + L C G P P+I W+
Sbjct: 193 SQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW 252
Query: 219 ---TYHIRI-------------VAENEIGSSEPSDTVTILTAEEAPS--GPPTHIKVEAT 260
+ I AEN G + I P T + +
Sbjct: 253 LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII---HAQPDWLDVITDTEADIG 309
Query: 261 DQNTL--KVSWSPPERDHW--NGV 280
S P W +G
Sbjct: 310 SDLRWSCVASGKPRPAVRWLRDGQ 333
Score = 54.5 bits (131), Expect = 4e-08
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
A P++ + + + G C A G+ + W + + L NR +
Sbjct: 293 AQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS--QNRIEV-----SG 345
Query: 110 GVLSDLSIKRTERGDSALFTCE 131
G L + DS ++ C
Sbjct: 346 GE---LRFSKLVLEDSGMYQCV 364
Score = 52.2 bits (125), Expect = 2e-07
Identities = 33/174 (18%), Positives = 46/174 (26%), Gaps = 42/174 (24%)
Query: 49 SAPPEFEIKLRNQTSRRG---EPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
S P FE + + G E L C A+ P W MN L D+RY
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYR---- 57
Query: 106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI 165
L G L + + D+ + C A+
Sbjct: 58 -LVAGDL--VISNPVKAKDAGSYQC-----------------------------VATNAR 85
Query: 166 GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPC-LTVGVPAPEIIWK 218
G S+ +L + A D T + C PA W
Sbjct: 86 GT-VVSREASLRFG-FLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWL 137
Score = 47.2 bits (112), Expect = 8e-06
Identities = 25/170 (14%), Positives = 46/170 (27%), Gaps = 45/170 (26%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
AP + + G+ L+C A G I W ++LD +++ +
Sbjct: 204 QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKW----RKLDGSQTSKW-----LS 254
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
+ L I+ + D + CE A G
Sbjct: 255 SEPL---LHIQNVDFEDEGTYECE-----------------------------AENIKGR 282
Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
+ + + A D++ C+ G P P + W
Sbjct: 283 DTYQGRIII----HAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRW 328
Score = 33.3 bits (76), Expect = 0.19
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 505 PARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
P+ A F + A + + L C G P P+I W+
Sbjct: 207 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR 242
Score = 31.4 bits (71), Expect = 0.83
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIW 539
+ A D++ C+ G P P + W
Sbjct: 303 DTEADIGSDLRWSCVASGKPRPAVRW 328
Score = 30.2 bits (68), Expect = 1.9
Identities = 8/55 (14%), Positives = 15/55 (27%)
Query: 193 FTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEA 247
+ E + L C P WK + + + + I +A
Sbjct: 17 PEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKA 71
Score = 28.7 bits (64), Expect = 5.8
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 515 FTATYTEDIKLPCLTVGVPAPEIIWK 540
+ E + L C P WK
Sbjct: 17 PEGSAEEKVTLTCRARANPPATYRWK 42
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 61.9 bits (150), Expect = 2e-10
Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 31/177 (17%)
Query: 46 LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAK---GEKPIGILWNMNNKRLDPKSDNRYTI 102
+ + +E + + RG +V++C + + W ++ + Y
Sbjct: 98 VRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSW-HTDEEENYFPGAEYDG 156
Query: 103 REEILPNGVLSDLSIKRTERGDS-ALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTA 161
+ +LP+G +L I+ D + C K + +T
Sbjct: 157 KYLVLPSG---ELHIREVGPEDGYKSYQCRTKHR-----------------------LTG 190
Query: 162 STNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
T + + +T S+ P A I L C G PAP W
Sbjct: 191 ETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWY 247
Score = 49.6 bits (118), Expect = 1e-06
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 16/81 (19%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
AP +I QT G P+V C+ G + W + K +
Sbjct: 306 APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE------------- 352
Query: 110 GVLSDLSIKRTERGDSALFTC 130
S L I+ ++ D ++ C
Sbjct: 353 ---SVLRIESVKKEDKGMYQC 370
Score = 48.0 bits (114), Expect = 5e-06
Identities = 26/170 (15%), Positives = 39/170 (22%), Gaps = 37/170 (21%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
SSAP + + L C A+G W + K R
Sbjct: 209 SSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDR-VKQ 267
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
+G L IK DS + C + ++G
Sbjct: 268 VSGT---LIIKDAVVEDSGKYLCV-----------------------------VNNSVGG 295
Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
+T+ P T + C G P + W
Sbjct: 296 ESVETVLTV----TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 341
Score = 44.2 bits (104), Expect = 7e-05
Identities = 25/199 (12%), Positives = 49/199 (24%), Gaps = 47/199 (23%)
Query: 51 PPEFEIKLRNQTS-RRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
P F + N+ + ++C+A G I+W ++ I +
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ----ISSD 58
Query: 110 GVL---SDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
G L + + + ++ C A G
Sbjct: 59 GKLVFPPFRAEDYRQEVHAQVYAC-----------------------------LARNQFG 89
Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCL---TVGVPAPEIIWKTYHIR 223
S++V + V + + + CL V + W
Sbjct: 90 SII-SRDVHVRAV--VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWH----T 142
Query: 224 IVAENEIGSSEPSDTVTIL 242
EN +E +L
Sbjct: 143 DEEENYFPGAEYDGKYLVL 161
Score = 32.6 bits (74), Expect = 0.29
Identities = 10/40 (25%), Positives = 11/40 (27%)
Query: 501 NDRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ P A I L C G PAP W
Sbjct: 208 SSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWY 247
Score = 31.8 bits (72), Expect = 0.56
Identities = 6/37 (16%), Positives = 8/37 (21%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
P T + C G P + W
Sbjct: 305 TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 341
Score = 29.5 bits (66), Expect = 2.8
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 1/75 (1%)
Query: 181 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENE-IGSSEPSDTV 239
+ P + + + + ++ C G P PEIIW V + + +
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 240 TILTAEEAPSGPPTH 254
H
Sbjct: 62 VFPPFRAEDYRQEVH 76
Score = 29.1 bits (65), Expect = 4.1
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
+ P + + + + ++ C G P PEIIW
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIW 38
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 57.0 bits (138), Expect = 2e-10
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
SS PP NQT ++L+C+A G+ I W P D R T I
Sbjct: 5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTF-PGRDPRAT----IQ 59
Query: 108 PNGVLSDLSIKRTERGDSALFTC 130
G L IK D+ +TC
Sbjct: 60 EQG---TLQIKNLRISDTGTYTC 79
Score = 35.1 bits (81), Expect = 0.008
Identities = 15/74 (20%), Positives = 22/74 (29%)
Query: 177 SPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPS 236
S + P I N T L C G P P I W + + +
Sbjct: 2 SSGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ 61
Query: 237 DTVTILTAEEAPSG 250
T+ I + +G
Sbjct: 62 GTLQIKNLRISDTG 75
Score = 29.7 bits (67), Expect = 0.60
Identities = 9/27 (33%), Positives = 9/27 (33%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
N T L C G P P I W
Sbjct: 17 NQTLAVDGTALLKCKATGDPLPVISWL 43
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 57.0 bits (138), Expect = 2e-10
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
S+ +L + T+ GE L+CE + + W N + + P +RY IR E
Sbjct: 5 SSGIMVTKQLEDTTAYCGERVELECEVSEDDAN-VKWFKNGEEIIPGPKSRYRIRVE--- 60
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQK 136
G L I+ + D+A ++ +
Sbjct: 61 -GKKHILIIEGATKADAAEYSVMTTGGQ 87
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 57.5 bits (139), Expect = 2e-10
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
SS PP NQT VL C A G ILW + + D+R L
Sbjct: 5 SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVST-QDSRIK----QL 59
Query: 108 PNGVLSDLSIKRTERGDSALFTC 130
NG L I+ + GD+ +TC
Sbjct: 60 ENG---VLQIRYAKLGDTGRYTC 79
Score = 35.5 bits (82), Expect = 0.008
Identities = 15/74 (20%), Positives = 27/74 (36%)
Query: 177 SPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPS 236
S + P I N T L C+ G P P I+W+ + + ++ +
Sbjct: 2 SSGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN 61
Query: 237 DTVTILTAEEAPSG 250
+ I A+ +G
Sbjct: 62 GVLQIRYAKLGDTG 75
Score = 30.9 bits (70), Expect = 0.36
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
N T L C+ G P P I+W+
Sbjct: 17 NQTVAVDGTFVLSCVATGSPVPTILWR 43
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 56.7 bits (137), Expect = 2e-10
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
P ++ V +++L++SW+ P + + + Y+E+ + TV G
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAP-----DAAFDSFMIQYQESEKVGEAINLTVP-----GS 53
Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
E L+ LK T+Y+V + +
Sbjct: 54 ERSYDLTGLKPGTEYTVSIYGVKGGHRSN 82
Score = 34.7 bits (80), Expect = 0.010
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
P++ + +T ++R+SW +P + + + Y S+
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAP-----DAAFDSFMIQYQESEK 41
Score = 30.5 bits (69), Expect = 0.37
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS 171
E + + + +Y+ +GLK Y + P
Sbjct: 44 EAINLTVPGSERSYDLTGLKPGTEYTVSIYGVKGGHRSNPL 84
Score = 29.0 bits (65), Expect = 1.0
Identities = 5/30 (16%), Positives = 7/30 (23%), Gaps = 1/30 (3%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
Y + I S P + T
Sbjct: 67 EYTVSIYGVKGGHRSNPL-SAEFTTGGHHH 95
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 59.1 bits (143), Expect = 3e-10
Identities = 34/240 (14%), Positives = 64/240 (26%), Gaps = 57/240 (23%)
Query: 46 LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
L + + ++ G+ L C A G + W NK + +
Sbjct: 13 GLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT-------- 64
Query: 106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI 165
S+L D+ + C + + + Q + ++
Sbjct: 65 -------SELIFNAVHVKDAGFYVCRVNN-----------NFTFEFSQW------SQLDV 100
Query: 166 GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW-------- 217
+ S ++ + +I + + L C+ VG P P W
Sbjct: 101 CDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT 160
Query: 218 ----KTYHIRIV-----------AENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQ 262
K Y + V N+ S + I+ P K + TDQ
Sbjct: 161 HETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPD--NKEQTTDQ 218
Score = 46.8 bits (111), Expect = 5e-06
Identities = 14/95 (14%), Positives = 25/95 (26%), Gaps = 15/95 (15%)
Query: 37 PSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKS 96
P +S + + ++ +Q G VLQC A G W N L ++
Sbjct: 104 PESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET 163
Query: 97 DNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE 131
+ + + C
Sbjct: 164 KKL---------------YMVPYVDLEHQGTYWCH 183
Score = 29.5 bits (66), Expect = 2.1
Identities = 8/47 (17%), Positives = 16/47 (34%)
Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
+ S ++I ++ + +KL C G P + W
Sbjct: 6 HHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQW 52
Score = 29.5 bits (66), Expect = 2.4
Identities = 8/52 (15%), Positives = 13/52 (25%)
Query: 488 LYSRHRGESDKCKNDRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
+ +I + + L C+ VG P P W
Sbjct: 101 CDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQW 152
Score = 28.3 bits (63), Expect = 5.0
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
++I ++ + +KL C G P + W
Sbjct: 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQW 52
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 59.2 bits (143), Expect = 4e-10
Identities = 26/181 (14%), Positives = 44/181 (24%), Gaps = 39/181 (21%)
Query: 43 PPLLLSSAPPEF----EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDN 98
P + + P + + + +C A G I W N + ++
Sbjct: 3 PDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG--EH 60
Query: 99 RYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFY 158
R + L ++ D +TC
Sbjct: 61 RIGGIKLRHQQWS---LVMESVVPSDRGNYTC---------------------------- 89
Query: 159 VTASTNIGEGQPSKNVT-LSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
G + + + L S P A N TA D++ C P I W
Sbjct: 90 -VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 148
Query: 218 K 218
Sbjct: 149 L 149
Score = 44.5 bits (105), Expect = 3e-05
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 6/90 (6%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILW----NMNNKRLDPKSDNRYTIR 103
P NQT+ G C+ + I W +N ++ P T+
Sbjct: 111 PHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVL 170
Query: 104 EEILPNGVLSD--LSIKRTERGDSALFTCE 131
+ + V +D L + D + C
Sbjct: 171 KSWISESVEADVRLRLANVSERDGGEYLCR 200
Score = 30.7 bits (69), Expect = 0.90
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 35/91 (38%)
Query: 199 EDIKLPCLTVGVPAPEIIW--------------------KTYHIRI-------------V 225
++ C G P P I W + + + + V
Sbjct: 31 NTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCV 90
Query: 226 AENEIGSSEPSDTVTILTAEEAPSGPPTHIK 256
EN+ GS + T+ +L E +P P
Sbjct: 91 VENKFGSIRQTYTLDVL--ERSPHRPILQAG 119
Score = 30.3 bits (68), Expect = 1.4
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 500 KNDRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
++ P A N TA D++ C P I W
Sbjct: 109 RSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 149
Score = 28.4 bits (63), Expect = 5.5
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 521 EDIKLPCLTVGVPAPEIIW 539
++ C G P P I W
Sbjct: 31 NTVRFRCPAAGNPTPSISW 49
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 56.3 bits (136), Expect = 4e-10
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
P F K +++ G+ L+C+ P + W NN+ + + +R ++ ++
Sbjct: 13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQF-NTDRISLYQD--N 69
Query: 109 NGVLSDLSIKRTERGDSALFTCE 131
G ++ L IK + D+ +T
Sbjct: 70 TGRVT-LLIKDVNKKDAGWYTVS 91
Score = 29.7 bits (67), Expect = 0.87
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIWK 218
+ + +KL C +P P++ WK
Sbjct: 24 SKKVLEGDSVKLECQISAIPPPKLFWK 50
Score = 29.7 bits (67), Expect = 0.87
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ + +KL C +P P++ WK
Sbjct: 24 SKKVLEGDSVKLECQISAIPPPKLFWK 50
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 60.9 bits (147), Expect = 5e-10
Identities = 40/319 (12%), Positives = 73/319 (22%), Gaps = 80/319 (25%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRYTIREEILPN 109
+ L + GEP ++C+A G+ W + NK L+ + +
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
+ + R D+ +TC S +T + I
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPSQSALVT---------------IVEKGFI---- 327
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK----------- 218
+ ++++ E+ P W
Sbjct: 328 ---------------NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK 372
Query: 219 ----TYHIRI-------------VAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATD 261
Y I AEN+ T+ I P + +
Sbjct: 373 GLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR-------KPQVLAEASAS 425
Query: 262 QNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKT 321
Q + P W K + + + SS
Sbjct: 426 QASCFSDGYPLPSWTW------KKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLN 479
Query: 322 YTQ----YSVVVQALNKLG 336
++ + V A N LG
Sbjct: 480 MSEAIKGFLVKCCAYNSLG 498
Score = 53.2 bits (127), Expect = 2e-07
Identities = 19/171 (11%), Positives = 35/171 (20%), Gaps = 41/171 (23%)
Query: 47 LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
L + LQ I LW + L+ + R
Sbjct: 44 LRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRG-- 101
Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
+ + I + + + +
Sbjct: 102 -----VVSMVILKMTETQAGEYLL-----------------------------FIQSEAT 127
Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
V++ R F +D L C++ VP P + W
Sbjct: 128 NYTILFTVSI----RNTLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEW 173
Score = 45.8 bits (108), Expect = 2e-05
Identities = 17/171 (9%), Positives = 33/171 (19%), Gaps = 53/171 (30%)
Query: 50 APPEFEIKLRNQ--TSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
++ + E K I W + K + L
Sbjct: 323 EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK--------GL 374
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
NG +S + + A + +
Sbjct: 375 DNG--YSISKFCNHKHQPGEYIF-----------------------------HAENDDAQ 403
Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
+ + R ++ + C + G P P WK
Sbjct: 404 FTKMFTLNI----RRKPQV--------LAEASASQASCFSDGYPLPSWTWK 442
Score = 33.9 bits (77), Expect = 0.13
Identities = 24/189 (12%), Positives = 43/189 (22%), Gaps = 48/189 (25%)
Query: 120 TERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPS 179
T D + C + + K + + +S Y S + + + S +
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSS----------YPMVSESPEDLGCALRPQSSGT 51
Query: 180 NRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRI--------------- 224
A + + I L L +W H +
Sbjct: 52 VYEAAAV-------EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS 104
Query: 225 ----------------VAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVS 268
++E + TV+I P K+E D
Sbjct: 105 MVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISE 164
Query: 269 WSPPERDHW 277
P W
Sbjct: 165 SVPEPIVEW 173
Score = 32.7 bits (74), Expect = 0.29
Identities = 16/194 (8%), Positives = 45/194 (23%), Gaps = 46/194 (23%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
+ ++ + L C ++ + W + + + + + +
Sbjct: 139 NTLLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQGESCKEESPAV------- 190
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
K C ++ G + + + +
Sbjct: 191 ---VKKEEKVLHELFGTDIRCCARN-----------ELGRECTRLFTIDLNQ-------- 228
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGV-PAPEIIWKTYHIRIVAEN 228
+P +P + + C V V + W+ + + N
Sbjct: 229 -------TPQTTLPQLFLKVGEPLW--------IRCKAVHVNHGFGLTWELENKALEEGN 273
Query: 229 EIGSSEPSDTVTIL 242
S S T++
Sbjct: 274 YFEMSTYSTNRTMI 287
Score = 29.3 bits (65), Expect = 3.7
Identities = 3/34 (8%), Positives = 9/34 (26%)
Query: 507 RIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ ++++ E+ P W
Sbjct: 328 NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWT 361
Score = 28.5 bits (63), Expect = 6.0
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 521 EDIKLPCLTVGVPAPEIIWK 540
+ C + G P P WK
Sbjct: 423 SASQASCFSDGYPLPSWTWK 442
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 55.8 bits (135), Expect = 5e-10
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
SS P L +Q GE L+CE + W + K + + +Y + E
Sbjct: 5 SSGPAAIIKPLEDQWVAPGEDVELRCELSRA-GTPVHWLKDRKAI--RKSQKYDVVCE-- 59
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
G ++ L I+ D+ +TCE+++ K ++
Sbjct: 60 --GTMAMLVIRGASLKDAGEYTCEVEASKSTAS 90
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 56.2 bits (136), Expect = 5e-10
Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 8/123 (6%)
Query: 234 EPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETST 293
+ + P GPP+ +V +N++ +SW P Y + S
Sbjct: 2 SSGSSGKNYDLSDLP-GPPSKPQVTDVTKNSVTLSWQPGT-PG-TLPASAYIIEAFSQSV 58
Query: 294 DKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
+ +TV K T+ L+ T Y +V+A+N G S + +
Sbjct: 59 SNSW--QTVA---NHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSG 113
Query: 354 EQP 356
Sbjct: 114 PSS 116
Score = 39.7 bits (93), Expect = 3e-04
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGP 251
Y + A N G S+PS + +++
Sbjct: 82 NTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSS 116
Score = 33.1 bits (76), Expect = 0.059
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 140 QQMTYEASGLKKKQNYIFYVTASTNIGEGQPS 171
+ Y GL+ Y+F V A G PS
Sbjct: 70 KTTLYTVRGLRPNTIYLFMVRAINPQGLSDPS 101
Score = 26.6 bits (59), Expect = 9.8
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 338 GPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY---G 394
G K Y P PP T +T ++ +SW P Y +
Sbjct: 1 GSSGSSGKNYDLSDLPG-PPSKPQVTDVTKNSVTLSWQ--PGTPGTLPASAYIIEAFSQS 57
Query: 395 PSDTW 399
S++W
Sbjct: 58 VSNSW 62
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 55.8 bits (135), Expect = 5e-10
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEIL 107
S+ P L++ T + +A GE +P +W + K + +Y + E+
Sbjct: 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPT-AIWTKDGKAI--TQGGKYKLSED-- 58
Query: 108 PNGVLSDLSIKRTERGDSALFTCE 131
G L I +T+ DS L+TC
Sbjct: 59 -KGGFF-LEIHKTDTSDSGLYTCT 80
Score = 28.8 bits (65), Expect = 1.3
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIW 217
+ T + K G P P IW
Sbjct: 15 DTTVSSDSVAKFAVKATGEPRPTAIW 40
Score = 28.8 bits (65), Expect = 1.3
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIW 539
+ T + K G P P IW
Sbjct: 15 DTTVSSDSVAKFAVKATGEPRPTAIW 40
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 55.4 bits (134), Expect = 5e-10
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
PP+ E + + G+ + C GE + W+ +++ + R+ I
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFH----IEN 58
Query: 109 NGVLSDLSIKRTERGDSALFTCEIK 133
L+ L I ++ D L+T +
Sbjct: 59 TDDLTTLIIMDVQKQDGGLYTLSLG 83
Score = 31.1 bits (71), Expect = 0.19
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 182 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
+P +I + + + + + + C G P PE+ W
Sbjct: 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTW 39
Score = 31.1 bits (71), Expect = 0.19
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
+P +I + + + + + + C G P PE+ W
Sbjct: 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTW 39
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 59.9 bits (144), Expect = 6e-10
Identities = 24/132 (18%), Positives = 39/132 (29%), Gaps = 11/132 (8%)
Query: 240 TILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLF 299
+L E+ PP + ++ T + + W P V Y V D
Sbjct: 3 DLLPDEKISLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKED----- 57
Query: 300 ETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE-EVKQYTAEGTPEQPPQ 358
E ++ L SV N S + + G+P
Sbjct: 58 -----DYETRITESKAVTILHMGFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIV 112
Query: 359 DNTCTTLTSQTI 370
+ TCTT T++
Sbjct: 113 NLTCTTNTTEDN 124
Score = 47.6 bits (112), Expect = 6e-06
Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 12/115 (10%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
+ + ++ + P D + L A + + PP ++ E + + W P
Sbjct: 190 RDWLAVLVNGSSKHSAIRPFDQLFALHAIDQIN-PPLNVTAEIE-GTRMSIQWEKPV-SA 246
Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA 331
+ Y V T + E + +S + ++Y V V+A
Sbjct: 247 FPIHCFDYEVKIHNTRNGY---------LQIEKLMTNAFISIIDDLSKYDVQVRA 292
Score = 33.7 bits (76), Expect = 0.13
Identities = 9/47 (19%), Positives = 13/47 (27%)
Query: 347 YTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
E PP + T + + W P V Y+V
Sbjct: 5 LPDEKISLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKI 51
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 55.4 bits (134), Expect = 7e-10
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
SS P F+ L++ G + L+C + W N L + ++Y++R+E
Sbjct: 5 SSGPVRFQEALKDLEVLEGGAATLRCVLSSV-AAPVKWCYGNNVL--RPGDKYSLRQE-- 59
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKIS 138
G + +L ++ DS ++C Q S
Sbjct: 60 --GAMLELVVRNLRPQDSGRYSCSFGDQTTS 88
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 55.7 bits (134), Expect = 7e-10
Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 9/111 (8%)
Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKP-------FLF 299
+ PPT V ++ + W P D I + V Y+ K +
Sbjct: 1 GSTYPPTPPNVTRLSDESVMLRWMVPRND--GLPIVIFKVQYRMVGKRKNWQTTNDNIPY 58
Query: 300 ETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
++ E GK +++ LK Y + A+ S ++ +
Sbjct: 59 GKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 109
Score = 35.3 bits (81), Expect = 0.010
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEA 247
TY RI+A ++ S+T +
Sbjct: 81 QHTYRFRILAVYSNNDNKESNTSAKFYLQPG 111
Score = 34.1 bits (78), Expect = 0.022
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 133 KSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKN---VTLSPS 179
K + T + LK + Y F + A + + + S L P
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPG 111
Score = 31.0 bits (70), Expect = 0.27
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 351 GTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY---GPSDTW 399
G+ PP T L+ +++ + W+ P I +KV Y G W
Sbjct: 1 GSTY-PPTPPNVTRLSDESVMLRWMVPR--NDGLPIVIFKVQYRMVGKRKNW 49
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 55.5 bits (134), Expect = 7e-10
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG-ILWNMNNKRLDPKSDNRYTIREEI 106
SS +L+ GE +C E +W + K + S +R+ +
Sbjct: 5 SSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTV--GSSSRFQATRQ- 61
Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQK 136
G L ++ D+ ++
Sbjct: 62 ---GRKYILVVREAAPSDAGEVVFSVRGLT 88
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 55.0 bits (133), Expect = 8e-10
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
SS F +L N +V C+ + + W L ++ ++ +E
Sbjct: 5 SSGANCFTEELTNLQVEEKGTAVFTCKTEHPAAT-VTWRKGLLEL--RASGKHQPSQE-- 59
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQK 136
G+ L+I E+ DS +TC+I +
Sbjct: 60 --GLTLRLTISALEKADSDTYTCDIGQAQ 86
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 55.4 bits (134), Expect = 8e-10
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 46 LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
+L P L NQT+ GE + C A G P I+W +N+ L D+ ++
Sbjct: 5 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETL--VEDSGIVLK-- 60
Query: 106 ILPNGVLSDLSIKRTERGDSALFTCE 131
+G + L+I+R + D L+TC+
Sbjct: 61 ---DGNRN-LTIRRVRKEDEGLYTCQ 82
Score = 33.5 bits (77), Expect = 0.043
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 32/108 (29%)
Query: 172 KNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------TYHIR 223
+ +T+ RV I +N T + E I++ C G P P+I+W I
Sbjct: 1 RQLTVLE--RVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIV 58
Query: 224 I----------------------VAENEIGSSEPSDTVTILTAEEAPS 249
+ A + +G ++ I A+E +
Sbjct: 59 LKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 106
Score = 31.9 bits (73), Expect = 0.12
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 502 DRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
+RV I +N T + E I++ C G P P+I+W
Sbjct: 7 ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMW 44
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 59.5 bits (144), Expect = 1e-09
Identities = 31/201 (15%), Positives = 59/201 (29%), Gaps = 37/201 (18%)
Query: 49 SAPPEFEIK-LRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
+ PP + ++ + +++CEAKG W N++ + D R ++R
Sbjct: 14 TQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMR---R 70
Query: 108 PNGVL-SDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
+G L D + C A G
Sbjct: 71 RSGTLVIDFRSGGRPEEYEGEYQC-----------------------------FARNKFG 101
Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCL-TVGVPAPEIIWKTYHIRIV 225
S + L S + P D + L C G+P+P I W + + +
Sbjct: 102 TAL-SNRIRLQVS-KSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPI 159
Query: 226 AENEIGSSEPSDTVTILTAEE 246
+++ S + +
Sbjct: 160 TQDKRVSQGHNGDLYFSNVML 180
Score = 58.0 bits (140), Expect = 3e-09
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 7/82 (8%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
A P + + +N GE L C A G + W +N + L N +
Sbjct: 311 AAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNR----EVAG 366
Query: 110 GVLSDLSIKRTERGDSALFTCE 131
+ + T+ A++ C
Sbjct: 367 DT---IIFRDTQISSRAVYQCN 385
Score = 54.5 bits (131), Expect = 4e-08
Identities = 34/176 (19%), Positives = 57/176 (32%), Gaps = 30/176 (17%)
Query: 45 LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIR 103
L +S +P + L + G P LQC G I W ++ D R +
Sbjct: 110 LQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPIT-QDKRVSQ- 167
Query: 104 EEILPNGVLSDLSIKRTERGDS-ALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
NG DL D ++C + + +++K + V +
Sbjct: 168 ---GHNG---DLYFSNVMLQDMQTDYSCNARFHFTHT---------IQQKNPFTLKVLTT 212
Query: 163 TNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
+ E PS ++ + D+ L C+ GVP P+I W
Sbjct: 213 RGVAERTPSFMYPQGTAS-----------SQMVLRGMDLLLECIASGVPTPDIAWY 257
Score = 47.6 bits (113), Expect = 6e-06
Identities = 28/179 (15%), Positives = 44/179 (24%), Gaps = 45/179 (25%)
Query: 43 PPLLLSSAPPEF---EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNR 99
++ P F + +Q RG +L+C A G I W L ++
Sbjct: 211 TTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL---PSDK 267
Query: 100 YTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYV 159
N L I DS + C +
Sbjct: 268 AKFENF---NKA---LRITNVSEEDSGEYFCLASN------------------------- 296
Query: 160 TASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
G +++ + N ED +L C G P P + W
Sbjct: 297 ------KMGSIRHTISVRV--KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWM 347
Score = 32.5 bits (74), Expect = 0.35
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ N ED +L C G P P + W
Sbjct: 310 KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWM 347
Score = 29.5 bits (66), Expect = 2.9
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ D+ L C+ GVP P+I W
Sbjct: 231 SQMVLRGMDLLLECIASGVPTPDIAWY 257
Score = 28.7 bits (64), Expect = 5.0
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 516 TATYTEDIKLPCLTVGVPAPEIIWK 540
++I + C G PAP W
Sbjct: 28 IVDPRDNILIECEAKGNPAPSFHWT 52
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 59.5 bits (144), Expect = 1e-09
Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 32/170 (18%)
Query: 51 PPEFEIKLR-NQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
F+ + R + RRG+ VL C + W N + R+
Sbjct: 101 LENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQ-DNRRFVS----QE 155
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
G +L I + E+ D +TC + + +++ ++ + L +
Sbjct: 156 TG---NLYIAKVEKSDVGNYTCVVTN-TVTNHKVLGPPTPLILR---------------- 195
Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
P F + A +KL C +G P P I+W+
Sbjct: 196 -----NDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWR 240
Score = 57.5 bits (139), Expect = 4e-09
Identities = 31/206 (15%), Positives = 59/206 (28%), Gaps = 42/206 (20%)
Query: 49 SAPPEFEIKLRNQT---SRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
+ P F + + + L CE KG I W +N +D D RY+
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYS---- 58
Query: 106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI 165
+ +G L + +T+ D+ + C A+ +
Sbjct: 59 -VVDGSLLINNPNKTQ--DAGTYQC-----------------------------IATNSF 86
Query: 166 GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPC-LTVGVPAPEIIWKTYHIRI 224
G S+ L + + + + + L C W
Sbjct: 87 GTIV-SREAKLQFA-YLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPS 144
Query: 225 VAENEIGSSEPSDTVTILTAEEAPSG 250
+N S+ + + I E++ G
Sbjct: 145 YQDNRRFVSQETGNLYIAKVEKSDVG 170
Score = 55.6 bits (134), Expect = 2e-08
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 10/82 (12%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
A P + + + E +C+A G W N L +R I
Sbjct: 294 AQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLT--RDRIQI-----EQ 346
Query: 110 GVLSDLSIKRTERGDSALFTCE 131
G L+I D+ ++ C
Sbjct: 347 GT---LNITIVNLSDAGMYQCV 365
Score = 47.1 bits (112), Expect = 9e-06
Identities = 25/175 (14%), Positives = 44/175 (25%), Gaps = 42/175 (24%)
Query: 43 PPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
++ P + +G L+C A G ILW + + + R
Sbjct: 197 DGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR--- 253
Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
NG+ L I ++ D+ + C A
Sbjct: 254 ---HKSNGI---LEIPNFQQEDAGSYEC-----------------------------VAE 278
Query: 163 TNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
+ G+ +T ++ E + C G P P W
Sbjct: 279 NSRGKNVAKGQLTF----YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRW 329
Score = 34.4 bits (79), Expect = 0.083
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 496 SDKCKNDRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
+D + P F + A +KL C +G P P I+W+
Sbjct: 196 NDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWR 240
Score = 31.0 bits (70), Expect = 1.1
Identities = 6/36 (16%), Positives = 9/36 (25%)
Query: 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
++ E + C G P P W
Sbjct: 294 AQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRW 329
Score = 27.9 bits (62), Expect = 8.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 521 EDIKLPCLTVGVPAPEIIWK 540
+ +KL C G P P I WK
Sbjct: 24 KKVKLSCEVKGNPKPHIRWK 43
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 56.8 bits (137), Expect = 1e-09
Identities = 22/171 (12%), Positives = 38/171 (22%), Gaps = 47/171 (27%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKP--IGILWNMNNKRLDPKSDNRYTIREEIL 107
P P LQC + W N L +
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTA--------TRKNA 53
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
N I + DS + C +
Sbjct: 54 SNME---YRINKPRAEDSGEYHCV------------------------------YHFVSA 80
Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
+ + + + + I + +D + C +VG P PE +W+
Sbjct: 81 PKANATIEV----KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWR 127
Score = 51.4 bits (123), Expect = 9e-08
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
A P+ R++ G+ +++ C++ G +W + + N R I+
Sbjct: 91 AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSG-RFFIINK 149
Query: 110 GVLSDLSIKR-TERGDSALFTCE 131
++L+I D + C
Sbjct: 150 ENYTELNIVNLQITEDPGEYECN 172
Score = 33.7 bits (77), Expect = 0.094
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ I + +D + C +VG P PE +W+
Sbjct: 90 KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWR 127
Score = 27.5 bits (61), Expect = 8.2
Identities = 5/40 (12%), Positives = 10/40 (25%), Gaps = 2/40 (5%)
Query: 181 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEI--IWK 218
+ RI + + + L C + W
Sbjct: 1 QNEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWT 40
Score = 27.5 bits (61), Expect = 8.2
Identities = 5/40 (12%), Positives = 10/40 (25%), Gaps = 2/40 (5%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEI--IWK 540
+ RI + + + L C + W
Sbjct: 1 QNEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWT 40
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 57.6 bits (139), Expect = 1e-09
Identities = 23/176 (13%), Positives = 44/176 (25%), Gaps = 39/176 (22%)
Query: 48 SSAPPEF----EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIR 103
+ P + +++ R +C A G + W N K ++R
Sbjct: 12 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGY 69
Query: 104 EEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAST 163
+ + L ++ D +TC
Sbjct: 70 KVRNQHWS---LIMESVVPSDKGNYTC-----------------------------VVEN 97
Query: 164 NIGEGQPSKNVT-LSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
G + ++ + S P A N + D++ C P I W
Sbjct: 98 EYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 153
Score = 46.8 bits (111), Expect = 5e-06
Identities = 11/89 (12%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
P N ++ G C+ + I W + ++ K ++L
Sbjct: 115 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL 174
Query: 108 PNGVLS-----DLSIKRTERGDSALFTCE 131
+ ++ L++ D+ + C+
Sbjct: 175 KHSGINSSNAEVLALFNVTEADAGEYICK 203
Score = 30.6 bits (69), Expect = 0.95
Identities = 8/37 (21%), Positives = 11/37 (29%)
Query: 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
P A N + D++ C P I W
Sbjct: 117 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 153
Score = 28.3 bits (63), Expect = 6.3
Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 35/92 (38%)
Query: 194 TATYTEDIKLPCLTVGVPAPEIIW--------------------KTYHIRI--------- 224
+K C G P P + W + + + +
Sbjct: 30 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 89
Query: 225 ----VAENEIGSSEPSDTVTILTAEEAPSGPP 252
V ENE GS + + ++ E + P
Sbjct: 90 NYTCVVENEYGSINHTYHLDVV--ERSRHRPI 119
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 54.3 bits (131), Expect = 1e-09
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 8/92 (8%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
S+ + L +QT G+ L+CE P W N + + +R + ++
Sbjct: 4 GSSGLKILTPLTDQTVNLGKEICLKCEISENIP--GKWTKNGLPV--QESDRLKVVQK-- 57
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139
G + L I D + + ++
Sbjct: 58 --GRIHKLVIANALTEDEGDYVFAPDAYNVTL 87
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 54.7 bits (132), Expect = 1e-09
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 10/103 (9%)
Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
+P PP ++T+ + W+ PE I Y V ++ + +
Sbjct: 9 SPIDPPGKPVPLNITRHTVTLKWAKPEYTG-GFKITSYIVEKRDLPNG-----RWLKANF 62
Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLG----PGPMSEEVK 345
E+ T+S L Y V A N G P S+ +
Sbjct: 63 SNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAIT 105
Score = 35.8 bits (83), Expect = 0.007
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 217 WKTYHIRIVAENEIGS----SEPSDTVTILTAEEA 247
Y R++A+N G+ SEPSD +T EA
Sbjct: 78 DAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 112
Score = 32.3 bits (74), Expect = 0.089
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 344 VKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY--GPSDTW 399
+ + +P PP +T T+ + W + P T I Y V P+ W
Sbjct: 1 MHHHHHHSSPIDPPGKPVPLNITRHTVTLKW-AKPEYTGGFKITSYIVEKRDLPNGRW 57
Score = 26.9 bits (60), Expect = 7.9
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 143 TYEASGLKKKQNYIFYVTASTNIGE-GQPSKNVTLSPSNRVPAR 185
+ SGL + Y F V A G PS+ PS+ + R
Sbjct: 69 EFTVSGLTEDAAYEFRVIAKNAAGAISPPSE-----PSDAITCR 107
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 57.1 bits (137), Expect = 1e-09
Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 21/141 (14%)
Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
I + Y+ R+ A + SE S T E PP + + + +L V P
Sbjct: 75 IQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPV-MNITQVN-GSLLVILHAPNLP 132
Query: 276 HWNGVIQ----------GYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQY 325
+ + Y V S +K + EG + + +L ++ Y
Sbjct: 133 YRYQKEKNVSIEDYYELLYRVFIINNSLEK-------EQKVYEGAHRAVEIEALTPHSSY 185
Query: 326 SVVVQALNKL--GPGPMSEEV 344
VV + + SEE
Sbjct: 186 CVVAEIYQPMLDRRSQRSEER 206
Score = 50.2 bits (119), Expect = 4e-07
Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 5/151 (3%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
T S P ++ ++ + + + + W P G Y+V YK + E
Sbjct: 2 TQSTHESLKPQRVQFQSRNFHNI-LQWQPGRAL--TGNSSVYFVQYKIYGQRQWKNKEDC 58
Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTC 362
+ LT + Y V+A + S + T PP N
Sbjct: 59 --WGTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNIT 116
Query: 363 TTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
S + + + P + Y
Sbjct: 117 QVNGSLLVILHAPNLPYRYQKEKNVSIEDYY 147
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 53.9 bits (130), Expect = 2e-09
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 7/89 (7%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
F K R+ G P+V + E + + W + N+Y + E
Sbjct: 7 PVSAFSKKPRSVEVAAGSPAVFEAETERAGVK-VRWQRGGSDISA--SNKYGLATE---- 59
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKIS 138
G L+++ D + S K+
Sbjct: 60 GTRHTLTVREVGPADQGSYAVIAGSSKVK 88
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 53.7 bits (129), Expect = 2e-09
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 10/99 (10%)
Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
T V ++ VSW + G+ V Y+ + + +
Sbjct: 7 LVATSESVTEITASSFVVSWVSAS-----DTVSGFRVEYELSEEGDEPQYLDLP-----S 56
Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
+ + L +Y V V +++ G + Q T
Sbjct: 57 TATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 35.6 bits (82), Expect = 0.006
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 351 GTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
+ T +T+ + VSWVS + G++V Y S+
Sbjct: 3 LGSHLVATSESVTEITASSFVVSWVSAS-----DTVSGFRVEYELSEE 45
Score = 29.4 bits (66), Expect = 0.85
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 218 KTYHIRIVAENEIGSSEPSDTVTILT 243
+ Y + + +E G + + T
Sbjct: 70 RKYIVNVYQISEDGEQSLILSTSQTT 95
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 54.0 bits (130), Expect = 2e-09
Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 17/120 (14%)
Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
PT ++ + + W PP + Y + T+ P L G
Sbjct: 10 GPTQLRALNLTEGFAVLHWKPP-----QNPVDTYDIQV--TAPGAPPLQAETP-----GS 57
Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTI 370
L L +T Y+ V+ L GP S +T T + P+D +T
Sbjct: 58 AVDYPLHDLVLHTNYTATVRGLR--GPNLTSPASITFT---TGLEAPRDLEAKEVTPSGP 112
Score = 34.7 bits (80), Expect = 0.013
Identities = 6/46 (13%), Positives = 10/46 (21%), Gaps = 5/46 (10%)
Query: 352 TPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
+ P LT + W P + Y +
Sbjct: 6 SGPDGPTQLRALNLTEGFAVLHWKPPQ-----NPVDTYDIQVTAPG 46
Score = 30.9 bits (70), Expect = 0.34
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPS 249
Y + + P+ ++T T EAP
Sbjct: 71 NYTATVRGLRGPNLTSPA-SITFTTGLEAPR 100
Score = 27.4 bits (61), Expect = 4.6
Identities = 6/39 (15%), Positives = 9/39 (23%)
Query: 133 KSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS 171
+ + Y L NY V P+
Sbjct: 50 LQAETPGSAVDYPLHDLVLHTNYTATVRGLRGPNLTSPA 88
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 56.0 bits (135), Expect = 2e-09
Identities = 35/171 (20%), Positives = 50/171 (29%), Gaps = 43/171 (25%)
Query: 49 SAPP-EFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
S P K N T+ RGE C A G I W N K ++ + +Y ++
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE--NEKYILKGS-- 56
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
N L+++ D + C +
Sbjct: 57 -NTE---LTVRNIINSDGGPYVCRATN-------------------------------KA 81
Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
G+ K L V I + T + L C G P PEI WK
Sbjct: 82 GEDEKQAFLQV--FVQPHIIQLKNE-TTYENGQVTLVCDAEGEPIPEITWK 129
Score = 52.9 bits (127), Expect = 3e-08
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI-REEILP 108
P I+L+N+T+ L C+A+GE I W ++ R E+
Sbjct: 94 VQPHI-IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG 152
Query: 109 NGVLSDLSIKRTERGDSALFTCE 131
S L IK + DS + CE
Sbjct: 153 QHGSSSLHIKDVKLSDSGRYDCE 175
Score = 30.9 bits (70), Expect = 0.63
Identities = 13/59 (22%), Positives = 20/59 (33%)
Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSG 250
N TA E++ C G P P I W I + + +T+ + G
Sbjct: 13 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGG 71
Score = 30.6 bits (69), Expect = 0.88
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
N T + L C G P PEI WK
Sbjct: 103 NETTYENGQVTLVCDAEGEPIPEITWK 129
Score = 29.8 bits (67), Expect = 1.5
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIW 539
N TA E++ C G P P I W
Sbjct: 13 NATAERGEEMTFSCRASGSPEPAISW 38
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 56.5 bits (136), Expect = 3e-09
Identities = 16/85 (18%), Positives = 24/85 (28%), Gaps = 3/85 (3%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQC-EAKGEKPIGILWNMNNKRLDPKS--DNRYTIREEI 106
PP + G +VL C E G P W + + R +
Sbjct: 103 VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 162
Query: 107 LPNGVLSDLSIKRTERGDSALFTCE 131
+ DL DS + C+
Sbjct: 163 TIDPKSGDLIFDPVTAFDSGEYYCQ 187
Score = 49.6 bits (118), Expect = 5e-07
Identities = 23/169 (13%), Positives = 36/169 (21%), Gaps = 34/169 (20%)
Query: 52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGV 111
+ E L C G + W I
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 112 LSD--LSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
S ++ R D+ +TC S G+
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCM-----------------------------VSEEGGQNY 92
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCL-TVGVPAPEIIW 217
++ L + VP + + + T L C G P E W
Sbjct: 93 GEVSIHL--TVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSW 139
Score = 31.1 bits (70), Expect = 0.60
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 185 RIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
+ + + E IKL C G +P + WK
Sbjct: 3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWK 36
Score = 31.1 bits (70), Expect = 0.60
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 507 RIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ + + E IKL C G +P + WK
Sbjct: 3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWK 36
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 53.5 bits (129), Expect = 3e-09
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
SS P F L+ + + G + LQCE P + W + L + RY+++++
Sbjct: 5 SSGPARFTQDLKTKEASEGATATLQCELSKVAP--VEWKKGPETL--RDGGRYSLKQD-- 58
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
G +L I D+ ++C ++ S+
Sbjct: 59 --GTRCELQIHDLSVADAGEYSCMCGQERTSAT 89
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 57.8 bits (139), Expect = 4e-09
Identities = 28/229 (12%), Positives = 56/229 (24%), Gaps = 63/229 (27%)
Query: 45 LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIR 103
L + L + GEP ++C+A G+ W + NK L+ + +
Sbjct: 221 LFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTY 280
Query: 104 EEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAST 163
+ + R D+ +TC
Sbjct: 281 STNRTMIRILFAFVSSVARNDTGYYTC--------------------------------- 307
Query: 164 NIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK----- 218
PS++ ++ + + ++++ E+ P W
Sbjct: 308 -SSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS 366
Query: 219 ----------TYHIRI-------------VAENEIGSSEPSDTVTILTA 244
Y I AEN+ T+ I +
Sbjct: 367 FPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
Score = 52.4 bits (125), Expect = 2e-07
Identities = 19/172 (11%), Positives = 34/172 (19%), Gaps = 41/172 (23%)
Query: 47 LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
L + LQ I LW + L+ + R
Sbjct: 44 LRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV- 102
Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
+ I + + + +
Sbjct: 103 ------VSMVILKMTETQAGEYLL-----------------------------FIQSEAT 127
Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
V++ R F +D L C++ VP P + W
Sbjct: 128 NYTILFTVSI----RNTLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWV 174
Score = 36.2 bits (83), Expect = 0.026
Identities = 16/195 (8%), Positives = 46/195 (23%), Gaps = 46/195 (23%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
+ ++ + L C ++ + W + + + + + ++
Sbjct: 139 NTLLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQGESCKEESPA----VVKK 193
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
+ + D C A +G
Sbjct: 194 E---EKVLHELFGTD---IRC-----------------------------CARNELGREC 218
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTV-GVPAPEIIWKTYHIRIVAEN 228
++ T+ + + E + + C V + W+ + + N
Sbjct: 219 -TRLFTID----LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGN 273
Query: 229 EIGSSEPSDTVTILT 243
S S T++
Sbjct: 274 YFEMSTYSTNRTMIR 288
Score = 35.0 bits (80), Expect = 0.051
Identities = 21/169 (12%), Positives = 39/169 (23%), Gaps = 48/169 (28%)
Query: 124 DSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVP 183
D + C + + K + + S Y S + + + S +
Sbjct: 6 DLPVIKCVLINHKNNDSSV--GKSSS--------YPMVSESPEDLGCALRPQSSGTVYEA 55
Query: 184 ARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRI------------------- 224
A + + I L L +W H +
Sbjct: 56 AAV-------EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVIL 108
Query: 225 ------------VAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATD 261
++E + TV+I P K+E D
Sbjct: 109 KMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQD 157
Score = 27.7 bits (61), Expect = 10.0
Identities = 4/35 (11%), Positives = 7/35 (20%)
Query: 505 PARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
+ + I L L +W
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLW 82
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 56.5 bits (136), Expect = 5e-09
Identities = 13/87 (14%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
PP+ +++ RGE + + C A E ++ + +L+ ++ +
Sbjct: 184 PEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDN---- 239
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKS 134
+ LS+ + D+ +++C +
Sbjct: 240 YYKKVRALSLNAVDFQDAGIYSCVASN 266
Score = 52.3 bits (125), Expect = 1e-07
Identities = 19/170 (11%), Positives = 36/170 (21%), Gaps = 41/170 (24%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
+ + + T G+ +VL C + R Y P
Sbjct: 89 AHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVL-RKTVYF----FSPW 143
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
I++ + DS + C+ G
Sbjct: 144 RG---FIIRKAKVLDSNTYVCKT------------------------------MVNGRES 170
Query: 170 PSKNVTLS--PSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
S + L + P +I E ++ C +
Sbjct: 171 TSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVI 220
Score = 44.2 bits (104), Expect = 5e-05
Identities = 29/205 (14%), Positives = 47/205 (22%), Gaps = 50/205 (24%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
+ P E GE L+C + G + W+
Sbjct: 1 ADPAPVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPESPG------ 50
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
S L+ + ++ + C T +
Sbjct: 51 -----STLTTRNATFKNTGTYRC-----------------------------TELEDPMA 76
Query: 168 GQPSKNVTLSPSNRVPARI-ASFNDNFTATYTEDIKLPCL-TVGVPAPEIIWKTYHIRIV 225
G S + L + PA T ++ LPCL T + R V
Sbjct: 77 G--STTIHLYV--KDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQV 132
Query: 226 AENEIGSSEPSDTVTILTAEEAPSG 250
+ P I A+ S
Sbjct: 133 LRKTVYFFSPWRGFIIRKAKVLDSN 157
Score = 29.5 bits (66), Expect = 2.7
Identities = 4/37 (10%), Positives = 8/37 (21%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
P +I E ++ C +
Sbjct: 184 PEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVI 220
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 52.7 bits (127), Expect = 5e-09
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 6/83 (7%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
P +++R+ G+ + + + + W N L + ++
Sbjct: 6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVEL--QESSKIHYTNT--- 60
Query: 109 NGVLSDLSIKRTERGDSALFTCE 131
+GVL+ L I DS +
Sbjct: 61 SGVLT-LEILDCHTDDSGTYRAV 82
Score = 28.4 bits (64), Expect = 1.9
Identities = 9/86 (10%), Positives = 18/86 (20%), Gaps = 32/86 (37%)
Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIW----------KTYHI------------------- 222
+ ++ + P E+ W H
Sbjct: 17 SHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDS 76
Query: 223 ---RIVAENEIGSSEPSDTVTILTAE 245
R V N G + T+ + +
Sbjct: 77 GTYRAVCTNYKGEASDYATLDVTGGD 102
Score = 27.6 bits (62), Expect = 3.6
Identities = 3/26 (11%), Positives = 8/26 (30%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIW 539
+ ++ + P E+ W
Sbjct: 17 SHRVPCGQNTRFILNVQSKPTAEVKW 42
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 55.6 bits (133), Expect = 6e-09
Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 13/133 (9%)
Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVE------ATDQNTLKVSW 269
+++ I + AEN +GSSE PP ++ + L +SW
Sbjct: 77 LYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLE-PPMLQALDIGPDVVSHQPGCLWLSW 135
Query: 270 SPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV 329
P + + Q + Y+ + + L L Y++ +
Sbjct: 136 KPWKP--SEYMEQECELRYQPQLKGANWTLVFH----LPSSKDQFELCGLHQAPVYTLQM 189
Query: 330 QALNKLGPGPMSE 342
+ + PG S
Sbjct: 190 RCIRSSLPGFWSP 202
Score = 44.4 bits (104), Expect = 3e-05
Identities = 20/137 (14%), Positives = 35/137 (25%), Gaps = 7/137 (5%)
Query: 248 PSGPPTHIKVEA-TDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
P P+++ N+L W P H + + K
Sbjct: 4 PPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63
Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQP-----PQDNT 361
+ + +L Y ++ VQA N LG + E P
Sbjct: 64 RQ-NNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPD 122
Query: 362 CTTLTSQTIRVSWVSPP 378
+ + +SW
Sbjct: 123 VVSHQPGCLWLSWKPWK 139
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 52.4 bits (126), Expect = 7e-09
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
+PP F R G + L+C GE P ++W ++L + R + +
Sbjct: 11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQL--AASERLSFPAD--- 65
Query: 109 NGVLSDLSIKRTERGDSALFTCE 131
G L + D+ ++ C
Sbjct: 66 -GAEHGLLLTAALPTDAGVYVCR 87
Score = 28.5 bits (64), Expect = 2.0
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIWK 218
+ +L C+ +G P P ++W+
Sbjct: 22 PVRVVSGAEAELKCVVLGEPPPVVVWE 48
Score = 28.5 bits (64), Expect = 2.0
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ +L C+ +G P P ++W+
Sbjct: 22 PVRVVSGAEAELKCVVLGEPPPVVVWE 48
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 52.3 bits (126), Expect = 9e-09
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILP 108
PP F N + G + + G P + W +N + + +SD+ + + +
Sbjct: 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPD-VSWYLNGRTV--QSDDLHKM--IVSE 58
Query: 109 NGVLSDLSIKRTERGDSALFTC 130
G+ S L + D+ + C
Sbjct: 59 KGLHS-LIFEVVRASDAGAYAC 79
Score = 28.4 bits (64), Expect = 2.0
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIW 217
N + ++ G+PAP++ W
Sbjct: 14 NMSIDEGRFCRMDFKVSGLPAPDVSW 39
Score = 28.4 bits (64), Expect = 2.0
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIW 539
N + ++ G+PAP++ W
Sbjct: 14 NMSIDEGRFCRMDFKVSGLPAPDVSW 39
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 51.9 bits (125), Expect = 9e-09
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 7/93 (7%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
+ A E E L GE + + E W + + L I E+
Sbjct: 2 AMALIEVEKPLYGVEVFVGETAHFEIELSEPDVH-GQWKLKGQPLAA--SPDCEIIED-- 56
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
G L + + G + + + + K ++
Sbjct: 57 --GKKHILILHNCQLGMTGEVSFQAANTKSAAN 87
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 54.7 bits (131), Expect = 9e-09
Identities = 32/185 (17%), Positives = 54/185 (29%), Gaps = 27/185 (14%)
Query: 183 PARIASFNDNFTATYTEDIKLPCLTVGVPAPEI------IWKTYHIRIVAENEIGSSEPS 236
A FTA Y + E + + +R+ AE S+
Sbjct: 23 SPAFAKGQLTFTAQYLSYRIFQDKCMQTTLTECDFSSLSKYGDHTLRVRAEFADEHSDWV 82
Query: 237 DTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD--------HWNGVIQGYYVGY 288
+ P ++V A + L + + P+ + Y V Y
Sbjct: 83 QITFSPVDDTIIGPPGMQVEVLA---DCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQY 139
Query: 289 KETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKL--GPGPMSEEVKQ 346
+ TD+ F + L +L+ +T Y V V+ G SE V +
Sbjct: 140 WKQGTDEKFQITP--------QYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCE 191
Query: 347 YTAEG 351
T
Sbjct: 192 QTTHD 196
Score = 45.5 bits (107), Expect = 1e-05
Identities = 20/154 (12%), Positives = 39/154 (25%), Gaps = 19/154 (12%)
Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
PP ++++ + + + + W P + Y + +T
Sbjct: 4 PPENVRMNSVNFKNI-LQWESPAFAKGQLT---FTAQYLSYRIFQDKCMQT--------T 51
Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTI 370
SSL Y +++ V+A + + PP +
Sbjct: 52 LTECDFSSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTII-GPPGMQVEVLADCLHM 110
Query: 371 RVSWVSPPLITANGVIK------GYKVVYGPSDT 398
R +K Y V Y T
Sbjct: 111 RFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGT 144
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 52.4 bits (126), Expect = 1e-08
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 5/96 (5%)
Query: 45 LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
L+ L + + G + +C + W ++ L + I
Sbjct: 7 GLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHA--NELNEIDA 64
Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
+ G L++++ DS E Q+ S+
Sbjct: 65 Q---PGGYHVLTLRQLALKDSGTIYFEAGDQRASAA 97
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 52.4 bits (126), Expect = 1e-08
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 45 LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
L + + P +F LRN+ + G +VL+CE P + W ++ L + +R+++R+
Sbjct: 13 LTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETL--RDGDRHSLRQ 68
Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
+ G +L I+ D+ + C ++ S+
Sbjct: 69 D----GARCELQIRGLVAEDAGEYLCMCGKERTSAM 100
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 56.9 bits (137), Expect = 1e-08
Identities = 32/233 (13%), Positives = 60/233 (25%), Gaps = 52/233 (22%)
Query: 45 LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
L + P + I R G L C A P W ++
Sbjct: 375 LNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT--------- 425
Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTN 164
+L I +S L+TC+ A+ +
Sbjct: 426 --------QELFISNITEKNSGLYTCQ-----------------------------ANNS 448
Query: 165 IGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRI 224
+ T++ S +P S N++ + + C +W +
Sbjct: 449 ASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSL 507
Query: 225 VAENEIGSSEPSDTVTILTAEEAPSGP-----PTHIKVEATDQNTLKVSWSPP 272
+ S + T+T+ + + +D TL V + P
Sbjct: 508 PVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPD 560
Score = 55.7 bits (134), Expect = 2e-08
Identities = 39/257 (15%), Positives = 62/257 (24%), Gaps = 65/257 (25%)
Query: 46 LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
+ P ++ + CE + + LW +NN+ L + +
Sbjct: 106 VYPELPKPSISSNNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLS---- 160
Query: 106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI 165
N L++ R D+A + CE N
Sbjct: 161 -NGNRT---LTLFNVTRNDTASYKCET------------------------------QNP 186
Query: 166 GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK------- 218
+ S +V L+ P N + E++ L C P + W
Sbjct: 187 VSARRSDSVILNVL-YGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ 245
Query: 219 -TYHIRI-------------VAENEIGSSEPSDTVTILTAEEAPS---GPPTHIKVEATD 261
T + I A N + TI E P VE D
Sbjct: 246 STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDED 305
Query: 262 QNTLK-VSWSPPERDHW 277
L W
Sbjct: 306 AVALTCEPEIQNTTYLW 322
Score = 55.3 bits (133), Expect = 3e-08
Identities = 39/246 (15%), Positives = 61/246 (24%), Gaps = 65/246 (26%)
Query: 45 LLLSSAPPEFEIKLRNQTSRRGEPSV-LQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIR 103
+ + + PP+ I N E +V L CE + + LW +NN+ L R +
Sbjct: 282 ITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQ-NTTYLWWVNNQSLPV--SPRLQLS 338
Query: 104 EEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAST 163
+ N L+ + R D + C
Sbjct: 339 ND---NRTLT---LLSVTRNDVGPYECG-----------------------------IQN 363
Query: 164 NIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK----- 218
+ S V L+ P ++ L C P + W
Sbjct: 364 ELSVDH-SDPVILNVLYG-PDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNI 421
Query: 219 ---TYHIRI-------------VAENEIGSSEPSDTVTILTAEEAP---SGPPTHIKVEA 259
T + I A N + TI + E P VE
Sbjct: 422 QQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVED 481
Query: 260 TDQNTL 265
D
Sbjct: 482 KDAVAF 487
Score = 52.6 bits (126), Expect = 2e-07
Identities = 31/207 (14%), Positives = 55/207 (26%), Gaps = 47/207 (22%)
Query: 45 LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
L + P I N + R GE L C A P W +N
Sbjct: 197 LNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST--------- 247
Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTN 164
+L I +S +TC+ A +
Sbjct: 248 --------QELFIPNITVNNSGSYTCQ-----------------------------AHNS 270
Query: 165 IGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRI 224
+ T++ P + N++ + + L C +W + +
Sbjct: 271 DTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT-YLWWVNNQSL 329
Query: 225 VAENEIGSSEPSDTVTILTAEEAPSGP 251
+ S + T+T+L+ GP
Sbjct: 330 PVSPRLQLSNDNRTLTLLSVTRNDVGP 356
Score = 52.3 bits (125), Expect = 3e-07
Identities = 28/218 (12%), Positives = 54/218 (24%), Gaps = 61/218 (27%)
Query: 45 LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
+ + P ++ + CE + + LW +N + L P S
Sbjct: 461 TVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQ-NTTYLWWVNGQSL-PVSPRLQLSNG 518
Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTN 164
N L+ + R D+ + C +
Sbjct: 519 ----NRTLT---LFNVTRNDARAYVCG-----------------------------IQNS 542
Query: 165 IGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK------ 218
+ + S VTL P + + ++ L C + P+P+ W+
Sbjct: 543 VSANR-SDPVTLD-VLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQ 600
Query: 219 ----TYHIRIV-----------AENEIGSSEPSDTVTI 241
I + N S +I
Sbjct: 601 QHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638
Score = 49.2 bits (117), Expect = 3e-06
Identities = 22/201 (10%), Positives = 45/201 (22%), Gaps = 47/201 (23%)
Query: 64 RRGEPSVLQCEAKGEKPIGILWNMNNKRL-------------DPKSDNRYTIREEILPNG 110
G+ +L + G W + Y+ RE I PN
Sbjct: 12 AEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA 71
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
L I+ + D+ +T +
Sbjct: 72 ---SLLIQNIIQNDTGFYTLHV------------------------------IKSDLVNE 98
Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEI 230
+P S N++ + + C +W + + +
Sbjct: 99 EATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRL 157
Query: 231 GSSEPSDTVTILTAEEAPSGP 251
S + T+T+ +
Sbjct: 158 QLSNGNRTLTLFNVTRNDTAS 178
Score = 28.8 bits (64), Expect = 5.7
Identities = 5/36 (13%), Positives = 8/36 (22%)
Query: 505 PARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
P ++ L C P + W
Sbjct: 381 PDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWL 416
Score = 28.4 bits (63), Expect = 6.8
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 505 PARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
P + + ++ L C + P+P+ W+
Sbjct: 559 PDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWR 594
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 54.3 bits (130), Expect = 1e-08
Identities = 24/173 (13%), Positives = 53/173 (30%), Gaps = 11/173 (6%)
Query: 188 SFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEA 247
++ T + C+ + + Y + + A ++ +
Sbjct: 42 LLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWAGQQLLWKGSFKPSEHVKPR-- 99
Query: 248 PSGPPTHIKVEATDQNTLKVSWSPP--ERDHWNGVIQGYYVGYKETSTDKPFLFETVDFS 305
P ++ V +TL ++WS P ++ + Y V + F V +
Sbjct: 100 ---APGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLT-YAVNIWSENDPADFRIYNVTY- 154
Query: 306 KEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQ 358
+ S+LK+ Y V+A + SE + +P +
Sbjct: 155 --LEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWHNSYREPFE 205
Score = 31.5 bits (71), Expect = 0.46
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 18/122 (14%)
Query: 261 DQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEH--HLTLSS 318
+ W + + ++ Y + T G HL +
Sbjct: 13 YMSISTCEWKMNGPTNCSTELRLLY--QLVFLLSEA---HTCIPENNGGAGCVCHLLMDD 67
Query: 319 LKTYTQYSVVVQALNKLGPGP---MSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWV 375
+ + Y++ + A +L SE VK P P + T T S T+ ++W
Sbjct: 68 VVSADNYTLDLWAGQQLLWKGSFKPSEHVK-------PR-APGNLTVHTNVSDTLLLTWS 119
Query: 376 SP 377
+P
Sbjct: 120 NP 121
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 56.2 bits (135), Expect = 1e-08
Identities = 24/170 (14%), Positives = 39/170 (22%), Gaps = 32/170 (18%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
A P + + R GE + C K + W N + + +
Sbjct: 209 KAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQT-KLQEKYNSWHHGDF 267
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
+ L+I DS +F C N +T +
Sbjct: 268 NYERQATLTISSARVNDSGVFMCYAN--------------------NTFGSANVTTTL-- 305
Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
V + N E++ L P PE
Sbjct: 306 -----EVVDKGFINIFPM---INTTVFVNDGENVDLIVEYEAFPKPEHQQ 347
Score = 53.9 bits (129), Expect = 7e-08
Identities = 28/196 (14%), Positives = 46/196 (23%), Gaps = 44/196 (22%)
Query: 50 APPEFEI---KLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREE 105
I GE L E + KP W N+ K ++ E
Sbjct: 309 DKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENE 368
Query: 106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI 165
V S+L + R + + +T S +
Sbjct: 369 SNIRYV-SELHLTRLKGTEGGTYTF-----------------------------LVSNSD 398
Query: 166 GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIV 225
+ NV + I +++ L C+ G P P I W
Sbjct: 399 VNAAIAFNVYV----NTKPEILTYDRLVNGM------LQCVAAGFPEPTIDWYFCPGTEQ 448
Query: 226 AENEIGSSEPSDTVTI 241
+ T+
Sbjct: 449 RCSASVLPVDVQTLNS 464
Score = 51.6 bits (123), Expect = 4e-07
Identities = 22/191 (11%), Positives = 51/191 (26%), Gaps = 40/191 (20%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
P + + R+ + ++++C + + P D R+ P
Sbjct: 114 PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLP-KDLRFI----PDPKA 168
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
+ S+KR C + G+
Sbjct: 169 GIMIKSVKRAY--HRLCLHCSV------------------------------DQEGKSVL 196
Query: 171 SKNVTL--SPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAP-EIIWKTYHIRIVAE 227
S+ L P+ + ++ ++ E+ + C V + WK + + +
Sbjct: 197 SEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQ 256
Query: 228 NEIGSSEPSDT 238
+ S D
Sbjct: 257 EKYNSWHHGDF 267
Score = 43.5 bits (102), Expect = 2e-04
Identities = 18/88 (20%), Positives = 24/88 (27%), Gaps = 12/88 (13%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRL-----DPKSDNRYTIRE 104
PE T R +LQC A G I W + T+
Sbjct: 411 TKPEI------LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNS 464
Query: 105 EILPNGVL-SDLSIKRTERGDSALFTCE 131
P G L SI + + C+
Sbjct: 465 SGPPFGKLVVQSSIDSSAFKHNGTVECK 492
Score = 42.0 bits (98), Expect = 4e-04
Identities = 24/205 (11%), Positives = 52/205 (25%), Gaps = 54/205 (26%)
Query: 46 LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
+PP + R G+ L C G + W ++
Sbjct: 31 PGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGF----VKWTFEILDETNENKQ------- 79
Query: 106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI 165
++ ++ E ++ +TC K +S Y+F
Sbjct: 80 -------NEWITEKAEATNTGKYTCTNKHGLSNS--------------IYVFV------- 111
Query: 166 GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIV 225
R PA++ + + D + C K + +
Sbjct: 112 ---------------RDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPL 156
Query: 226 AENEIGSSEPSDTVTILTAEEAPSG 250
++ +P + I + + A
Sbjct: 157 PKDLRFIPDPKAGIMIKSVKRAYHR 181
Score = 28.9 bits (64), Expect = 5.4
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 6/38 (15%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
I +++ L C+ G P P I W
Sbjct: 410 NTKPEILTYDRLVNGM------LQCVAAGFPEPTIDWY 441
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 51.7 bits (124), Expect = 1e-08
Identities = 17/109 (15%), Positives = 29/109 (26%), Gaps = 14/109 (12%)
Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
P ++ + T ++W+ P GY + + G
Sbjct: 10 APRDLEAKEVTPRTALLTWTEP-----PVRPAGYLLSFHTPG-------GQTQEILLPGG 57
Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQD 359
L L T Y+ +QA+ P +T G P
Sbjct: 58 ITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTS--FTTGGLRISGPSS 104
Score = 39.0 bits (91), Expect = 4e-04
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 352 TPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
+ + P+D +T +T ++W PP GY + +
Sbjct: 6 SGLEAPRDLEAKEVTPRTALLTWTEPP-----VRPAGYLLSFHTPG 46
Score = 29.3 bits (66), Expect = 0.90
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPS 249
+Y+ R+ A P T
Sbjct: 71 SYNARLQAMWGQSLLPPVSTSFTTGGLRISG 101
Score = 29.3 bits (66), Expect = 1.1
Identities = 5/41 (12%), Positives = 13/41 (31%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS 171
+ + + +++ GL +Y + A P
Sbjct: 48 QTQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPV 88
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 55.4 bits (133), Expect = 2e-08
Identities = 33/246 (13%), Positives = 58/246 (23%), Gaps = 60/246 (24%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRLDPKSDNRYTIREEI 106
+ P + G+ L C G P+ +W + L P R +
Sbjct: 5 AEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVP--SERVLVGP-- 60
Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
L + DS ++C + + + S+
Sbjct: 61 ------QRLQVLNASHEDSGAYSCRQRL-----------TQRVLCHFSVRVTDAPSSGDD 103
Query: 167 EGQPSKNVTLSPSNRVPARIASFND---NFTATYTEDIKLPCLTVGVPAPEIIWK----- 218
E + P ++ C G P P I W
Sbjct: 104 EDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE 163
Query: 219 ---------------TYHIRI-------------VAENEIGSSEPSDTVTILTAEEAPSG 250
+ + + V EN+ GS + T+ +L E +P
Sbjct: 164 FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL--ERSPHR 221
Query: 251 PPTHIK 256
P
Sbjct: 222 PILQAG 227
Score = 52.3 bits (125), Expect = 1e-07
Identities = 25/178 (14%), Positives = 43/178 (24%), Gaps = 39/178 (21%)
Query: 46 LLSSAPPEF----EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYT 101
+ + P + + + +C A G I W N + ++R
Sbjct: 114 GVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG--EHRIG 171
Query: 102 IREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTA 161
+ L ++ D +TC
Sbjct: 172 GIKLRHQQWS---LVMESVVPSDRGNYTC-----------------------------VV 199
Query: 162 STNIGEGQPSKNVT-LSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
G + + + L S P A N TA D++ C P I W
Sbjct: 200 ENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257
Score = 44.6 bits (105), Expect = 5e-05
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 7/90 (7%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILW----NMNNKRLDPKSDNRYTIR 103
P NQT+ G C+ + I W +N ++ P T+
Sbjct: 219 PHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVL 278
Query: 104 EEILPNGVLSD---LSIKRTERGDSALFTC 130
+ N + LS+ D+ +TC
Sbjct: 279 KTAGANTTDKELEVLSLHNVTFEDAGEYTC 308
Score = 30.7 bits (69), Expect = 1.2
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPC-LTVGVPAPEIIWK 540
VP + + ++L C G P +W
Sbjct: 6 EVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWV 44
Score = 30.4 bits (68), Expect = 1.5
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
P A N TA D++ C P I W
Sbjct: 221 RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 51.1 bits (123), Expect = 2e-08
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
P+ ++++QT +G + + G+ W N +++ SD Y E +
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIER-SDRIYWYWPE---DN 60
Query: 111 VLSDLSIKRTERGDSALFTCE 131
V L I+ DSA +
Sbjct: 61 VCE-LVIRDVTGEDSASIMVK 80
Score = 28.0 bits (63), Expect = 2.9
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIW 217
+ T D VG P PE W
Sbjct: 14 SQTVGQGSDAHFRVRVVGKPDPECEW 39
Score = 28.0 bits (63), Expect = 2.9
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIW 539
+ T D VG P PE W
Sbjct: 14 SQTVGQGSDAHFRVRVVGKPDPECEW 39
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 54.7 bits (131), Expect = 2e-08
Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 1/98 (1%)
Query: 47 LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
L + + R+GE L C G + + W K + T
Sbjct: 177 LQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKE-SGRLVEPVTDFLLD 235
Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTY 144
+P + S L I E DS +TC + Q
Sbjct: 236 MPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKA 273
Score = 33.9 bits (77), Expect = 0.12
Identities = 16/176 (9%), Positives = 31/176 (17%), Gaps = 50/176 (28%)
Query: 43 PPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
P + E + C + + L P
Sbjct: 91 PTVGFLPNDAEELF----IFLTEITEITIPCRVTDPQLVVTLHEKKGDVALP-------- 138
Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
V D + + + C+ +
Sbjct: 139 --------VPYDHQRGFSGIFEDRSYICK-----------------------------TT 161
Query: 163 TNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
E S + ++ E+I L C+ +G W
Sbjct: 162 IGDREVD-SDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWT 216
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 51.2 bits (123), Expect = 2e-08
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 6/86 (6%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
++ K R+ T GE + C+ GE + W + L R+ +
Sbjct: 11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST--SARHQVTTT-- 66
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIK 133
S I + D ++ ++
Sbjct: 67 --KYKSTFEISSVQASDEGNYSVVVE 90
Score = 33.1 bits (76), Expect = 0.044
Identities = 21/99 (21%), Positives = 27/99 (27%), Gaps = 32/99 (32%)
Query: 175 TLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW----------------- 217
S + ARI + + T E + C T G P P + W
Sbjct: 6 HHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT 65
Query: 218 --KTYHIRI-------------VAENEIGSSEPSDTVTI 241
I V EN G E T+TI
Sbjct: 66 TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 31.6 bits (72), Expect = 0.17
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 492 HRGESDKCKNDRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
H S K + ARI + + T E + C T G P P + W
Sbjct: 4 HHHHSSK---TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTW 48
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 50.8 bits (122), Expect = 2e-08
Identities = 10/83 (12%), Positives = 24/83 (28%), Gaps = 6/83 (7%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
P+ R + G L+ + G W + + + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGA--ALAPELLVDAK----S 55
Query: 111 VLSDLSIKRTERGDSALFTCEIK 133
+ + +R DS + ++K
Sbjct: 56 STTSIFFPSAKRADSGNYKLKVK 78
Score = 32.7 bits (75), Expect = 0.060
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 13/70 (18%)
Query: 182 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW--------KTYHIRIVAEN----- 228
+ +I + + L +G P P W + + A++
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60
Query: 229 EIGSSEPSDT 238
S++ +D+
Sbjct: 61 FFPSAKRADS 70
Score = 32.3 bits (74), Expect = 0.062
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
+ +I + + L +G P P W
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATW 36
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 52.5 bits (126), Expect = 2e-08
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
P F + + G + C+ +G ++W ++ + K + I +
Sbjct: 39 HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPV--KESRHFQIDYD--E 94
Query: 109 NGVLSDLSIKRTERGDSALFTC 130
G S L+I D A +TC
Sbjct: 95 EGNCS-LTISEVCGDDDAKYTC 115
Score = 33.7 bits (77), Expect = 0.070
Identities = 19/153 (12%), Positives = 42/153 (27%), Gaps = 38/153 (24%)
Query: 147 SGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIA-SFN---DNFTATYTEDIK 202
SG+ ++ T+ N +++ L + F + +
Sbjct: 2 SGMSGRKASGSSPTSPINA-NKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAAR 60
Query: 203 LPCLTVGVPAPEIIW----------KTYHI-----------------------RIVAENE 229
C G P PE++W + + I A N
Sbjct: 61 FDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNS 120
Query: 230 IGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQ 262
+G + + + + T + G + E ++
Sbjct: 121 LGEATCTAELLVETMGKEGEGEGEGEEDEEEEE 153
Score = 28.3 bits (63), Expect = 3.6
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIW 539
+ + C G P PE++W
Sbjct: 50 DMEVVEGSAARFDCKVEGYPDPEVMW 75
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 54.6 bits (131), Expect = 3e-08
Identities = 20/208 (9%), Positives = 46/208 (22%), Gaps = 46/208 (22%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRYTIREEILPN 109
+ + + + ++L C G+ R Y+ P
Sbjct: 89 ARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLM-RHTNYS----FSPW 143
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
+I R + S + C G
Sbjct: 144 H---GFTIHRAKFIQSQDYQCSA------------------------------LMGGRKV 170
Query: 170 PSKNVTLS--PSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTY-----HI 222
S ++ L P + E ++ C V ++ + I
Sbjct: 171 MSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAI 230
Query: 223 RIVAENEIGSSEPSDTVTILTAEEAPSG 250
++ + T+ + + +G
Sbjct: 231 PQQSDFHNNRYQKVLTLNLDQVDFQHAG 258
Score = 53.8 bits (129), Expect = 4e-08
Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
PP + RGE + + C A + + NN +L + +
Sbjct: 184 PGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRY-- 241
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKS 134
+ L++ + + + ++C +
Sbjct: 242 --QKVLTLNLDQVDFQHAGNYSCVASN 266
Score = 45.3 bits (107), Expect = 2e-05
Identities = 31/205 (15%), Positives = 55/205 (26%), Gaps = 50/205 (24%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
+ + P E + + G L+C G + W+ + +
Sbjct: 1 AGSIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPP-----------SPHWTLY 45
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
+G S LS ++ + C T +
Sbjct: 46 SDGSSSILSTNNATFQNTGTYRC-----------------------------TEPGDPLG 76
Query: 168 GQPSKNVTLSPSNRVPARI-ASFNDNFTATYTEDIKLPCL-TVGVPAPEIIWKTYHIRIV 225
G + ++ + + PAR +D LPCL T V + R +
Sbjct: 77 GSAAIHLYV----KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPL 132
Query: 226 AENEIGSSEPSDTVTILTAEEAPSG 250
+ S P TI A+ S
Sbjct: 133 MRHTNYSFSPWHGFTIHRAKFIQSQ 157
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 53.2 bits (127), Expect = 3e-08
Identities = 16/128 (12%), Positives = 32/128 (25%), Gaps = 15/128 (11%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
Y++R+ A +S S + P +++ L +
Sbjct: 80 PYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPG-MEITKDG-FHLVIELEDLGPQF-- 135
Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKL--G 336
+ V Y + V + L +++ Y V Q K
Sbjct: 136 ----EFLVAYWRREPGAEEHVKMV-----RSGGIPVHLETMEPGAAYCVKAQTFVKAIGR 186
Query: 337 PGPMSEEV 344
S+
Sbjct: 187 YSAFSQTE 194
Score = 48.1 bits (114), Expect = 1e-06
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 14/145 (9%)
Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG- 309
P + V +T+ L + WSP Y V Y+ + S
Sbjct: 9 APQQLSVLSTNMKHL-LMWSPVIAPGETVY---YSVEYQGEYESLYTSHIWIPSSWCSLT 64
Query: 310 KEHHLTLSS-LKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQ 368
+ ++ + Y++ V+A S + + T P
Sbjct: 65 EGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGFHL 124
Query: 369 TIRVSWVSPPLITANGVIKGYKVVY 393
I + + P + V Y
Sbjct: 125 VIELEDLGPQF--------EFLVAY 141
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 50.7 bits (121), Expect = 3e-08
Identities = 22/121 (18%), Positives = 35/121 (28%), Gaps = 18/121 (14%)
Query: 233 SEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETS 292
S S PP + T + + W PPE + GY + ++ S
Sbjct: 2 SSGSS----------GLSPPRGLVAVRTP-RGVLLHWDPPELV--PKRLDGYVLEGRQGS 48
Query: 293 TDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGT 352
+E +D G E L + L Y + A S T+ +
Sbjct: 49 QG----WEVLD-PAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLS 103
Query: 353 P 353
Sbjct: 104 G 104
Score = 41.1 bits (96), Expect = 9e-05
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
Y R+VA S+PS+T + T+ +
Sbjct: 73 DVLYEFRLVAFAGSFVSDPSNTANVSTSGLSG 104
Score = 34.5 bits (79), Expect = 0.018
Identities = 11/53 (20%), Positives = 17/53 (32%)
Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVP 183
E+ ++ + GL K Y F + A PS +S S
Sbjct: 52 EVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSG 104
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 52.9 bits (127), Expect = 4e-08
Identities = 31/214 (14%), Positives = 49/214 (22%), Gaps = 52/214 (24%)
Query: 66 GEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD 124
E L + + W+ N + + +R G L I D
Sbjct: 17 AEGIQLYSFVTYYVEDLKVNWSHNGSAI--RYSDRVKTGVT----GEQIWLQINEPTPND 70
Query: 125 SALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPA 184
+ E+ K Q+ A
Sbjct: 71 KGKYVMELFDGKTGHQK------------TVDLSGQAYDEAYAEFQRLKQAAIAEKNRAR 118
Query: 185 RIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------TYHIRI------------ 224
+ D T + + L C G P PE+ W T H +
Sbjct: 119 VLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTI 178
Query: 225 -------------VAENEIGSSEPSDTVTILTAE 245
V +N+ GS TV++ E
Sbjct: 179 NGVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE 212
Score = 47.9 bits (114), Expect = 2e-06
Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 5/104 (4%)
Query: 30 FDPELLNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNN 89
+D + + T + G+ L C G+ P + W N
Sbjct: 96 YDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNE 155
Query: 90 KRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK 133
K L + ++ E G + +I DS + +K
Sbjct: 156 KALAQ--TDHCNLKFE---AGRTAYFTINGVSTADSGKYGLVVK 194
Score = 33.3 bits (76), Expect = 0.14
Identities = 12/58 (20%), Positives = 17/58 (29%)
Query: 483 GSDETLYSRHRGESDKCKNDRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
DE R + + D T + + L C G P PE+ W
Sbjct: 95 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWL 152
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 53.3 bits (127), Expect = 4e-08
Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 19/137 (13%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
Y+ R+ A S+ +++ E GPP ++ ++ + +
Sbjct: 79 QYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPEKWKRNPE 138
Query: 279 GVIQ---------GYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV 329
+ Y V T +++ + + H L L+ L+ T Y V V
Sbjct: 139 DLPVSMQQIYSNLKYNVSVLNTKSNRTW--------SQCVTNHTLVLTWLEPNTLYCVHV 190
Query: 330 QALNKL--GPGPMSEEV 344
++ SE+
Sbjct: 191 ESFVPGPPRRAQPSEKQ 207
Score = 51.8 bits (123), Expect = 1e-07
Identities = 25/143 (17%), Positives = 45/143 (31%), Gaps = 5/143 (3%)
Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
P +I + + + + W+PPE GV Y V Y K
Sbjct: 11 KPANITFLSINMKNV-LQWTPPE--GLQGVKVTYTVQYFIYGQKKWLNKSEC--RNINRT 65
Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTI 370
L+ + QY V+A+ +E + Y T PP+ T S ++
Sbjct: 66 YCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISV 125
Query: 371 RVSWVSPPLITANGVIKGYKVVY 393
++ + + +Y
Sbjct: 126 VLTAPEKWKRNPEDLPVSMQQIY 148
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 54.6 bits (130), Expect = 4e-08
Identities = 25/203 (12%), Positives = 58/203 (28%), Gaps = 8/203 (3%)
Query: 215 IIWKTYHIRIVAENEIGSSEP-SDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPE 273
I +++ + V P +T+ + P +++ Q+ ++WS
Sbjct: 74 IPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTD-QDHFLLTWSVAL 132
Query: 274 RDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALN 333
+ + + ++ +E + L L + Y V+
Sbjct: 133 GSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRL 192
Query: 334 KLGPGPMSEE-----VKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKG 388
G + ++ E PQ+ C + + SW A+ V G
Sbjct: 193 APGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSW-EVRKEVASSVSFG 251
Query: 389 YKVVYGPSDTWYGDPKTDICTDI 411
P + + C+ +
Sbjct: 252 LFYKPSPDAGSAVLLREEECSPV 274
Score = 51.5 bits (122), Expect = 3e-07
Identities = 26/203 (12%), Positives = 53/203 (26%), Gaps = 23/203 (11%)
Query: 217 WKTYHIRIVAENEIGSSEPSD-----TVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSP 271
TY R+ GS ++ P +++ L SW
Sbjct: 181 SSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEV 240
Query: 272 PERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA 331
+ + +Y + + +EE L +T++ +
Sbjct: 241 RKEVASSVSFGLFYKPSPDA--------GSAVLLREEECSPVLREGLGSLHTRHHCQIPV 292
Query: 332 LNKLGPGPMSEEVKQYTAEGT-------PEQPPQDNTCTTLTSQTIRVSWVSPPLITANG 384
+ G V+ AE PP T + + W +
Sbjct: 293 PDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQV--TKDGDSYSLRW-ETMKMRYEH 349
Query: 385 VIKGYKVVYGPSDTWYGDPKTDI 407
+ +++ Y + D KT+
Sbjct: 350 IDHTFEIQYRKDTATWKDSKTET 372
Score = 48.1 bits (113), Expect = 5e-06
Identities = 26/247 (10%), Positives = 62/247 (25%), Gaps = 52/247 (21%)
Query: 129 TCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIAS 188
+ ++ Q T L Y+ V G + SP ++
Sbjct: 158 WEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGD 217
Query: 189 FNDNFTATYTED-------------------------------------IKLPCLTVGVP 211
D + C V
Sbjct: 218 EAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLRE 277
Query: 212 APEIIWKTYHIRIVAENEIGSSEPSDTV-------TILTAEEAPSGPPTHIKVEATDQNT 264
+ +H +I + + +V I ++ PP ++V ++
Sbjct: 278 GLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPP-SLQVTKDG-DS 335
Query: 265 LKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQ 324
+ W + + + + + Y++ + ++ H + L +L+ T+
Sbjct: 336 YSLRWETMKM-RYEHIDHTFEIQYRKDTAT-----WKDSKTETLQNAHSMALPALEPSTR 389
Query: 325 YSVVVQA 331
Y V+
Sbjct: 390 YWARVRV 396
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 50.4 bits (121), Expect = 4e-08
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEI 106
S P F + T + G+ + C+ G P + W ++ K + P D+ + + +
Sbjct: 6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPD-LSWQLDGKPVRP--DSAHKM--LV 60
Query: 107 LPNGVLSDLSIKRTERGDSALFTC 130
NGV S L I+ D+ ++TC
Sbjct: 61 RENGVHS-LIIEPVTSRDAGIYTC 83
Score = 33.5 bits (77), Expect = 0.043
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 33/91 (36%)
Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIWK--------TYHIRI------------------- 224
+ T + ++ C G+P P++ W+ ++
Sbjct: 18 DLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRD 77
Query: 225 ------VAENEIGSSEPSDTVTILTAEEAPS 249
+A N G + S + + E PS
Sbjct: 78 AGIYTCIATNRAGQNSFSLELVVAAKESGPS 108
Score = 28.9 bits (65), Expect = 1.3
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIW 539
+ T + ++ C G+P P++ W
Sbjct: 18 DLTVQEGKLCRMDCKVSGLPTPDLSW 43
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 53.8 bits (129), Expect = 4e-08
Identities = 17/168 (10%), Positives = 44/168 (26%), Gaps = 29/168 (17%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
P + + N +C+ K W+ + + R E+ G
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDKMTPKSE-FSWSKDYVST--EDSPRL----EVESKG 55
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
+ ++ K D +++C++ + S I E +
Sbjct: 56 NKTKMTFKDLGMDDLGIYSCDVTDTDGIAS---------------------SYLIDEEEL 94
Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPC-LTVGVPAPEIIW 217
+ + LS ++ P ++ ++ +
Sbjct: 95 KRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNY 142
Score = 45.4 bits (107), Expect = 3e-05
Identities = 22/194 (11%), Positives = 55/194 (28%), Gaps = 22/194 (11%)
Query: 26 SSFHFDPELLNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILW 85
SS+ D E L + +L + +G+ K + +
Sbjct: 85 SSYLIDEEELKRLLALSHEH--KFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNY 142
Query: 86 NMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYE 145
N K + + I N + ++ +++ + D +T +++ K ++
Sbjct: 143 IFNEKEIFEGPKYKMHIDR----NTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVL 198
Query: 146 ASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPC 205
+ KK + ++ + + T ++ L C
Sbjct: 199 VGDVFKK--------------LQKEAEFQRQEWIRKQGPHFVEYLSW-EVTGECNVLLKC 243
Query: 206 LTVGVPAP-EIIWK 218
+ I+W
Sbjct: 244 KVANIKKETHIVWY 257
Score = 42.3 bits (99), Expect = 2e-04
Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 10/106 (9%)
Query: 31 DPELLNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNN 89
+ L + P F L + +L+C+ K I+W +
Sbjct: 202 VFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDE 260
Query: 90 KRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135
+ + D ++ ++ I L I + D+ ++ +K
Sbjct: 261 REISV--DEKHDFKDGI------CTLLITEFSKKDAGIYEVILKDD 298
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 52.8 bits (126), Expect = 5e-08
Identities = 29/160 (18%), Positives = 46/160 (28%), Gaps = 14/160 (8%)
Query: 248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
P G P K + ++ T W P Y ET E D+
Sbjct: 3 PPGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMH-----ECPDYITG 57
Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTL-- 365
H + Y ++V A N++G E T P+ PP +
Sbjct: 58 GPNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPD-PPLELAVEVKQP 116
Query: 366 --TSQTIRVSWVSPPL--ITANGVIKGYKVVYGP--SDTW 399
+ + W P L + Y++ P + W
Sbjct: 117 EDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEW 156
Score = 51.6 bits (123), Expect = 1e-07
Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 13/146 (8%)
Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAE---EAPSGPPTHIKVEATDQNTLKVSWSPP 272
+W+TY + + A N++GSS + +T + P +K + L + WSPP
Sbjct: 71 MWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPP 130
Query: 273 ERDHW--NGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ 330
Y + K + +E G++ + SL +Y V V+
Sbjct: 131 TLIDLKTGWFTLLYEIRLKPEKAAE---WEIH----FAGQQTEFKILSLHPGQKYLVQVR 183
Query: 331 ALNKLGP-GPMSEEVKQYTAEGTPEQ 355
G S
Sbjct: 184 CKPDHGYWSAWSPATFIQIPSDFTMN 209
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 52.3 bits (125), Expect = 5e-08
Identities = 10/85 (11%), Positives = 16/85 (18%), Gaps = 2/85 (2%)
Query: 46 LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
L P + + C + W M +
Sbjct: 99 LSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEP--APTAANGGVM 156
Query: 106 ILPNGVLSDLSIKRTERGDSALFTC 130
+G LS + TC
Sbjct: 157 KEKDGSLSVAVDLSLPKPWHLPVTC 181
Score = 39.2 bits (91), Expect = 0.001
Identities = 20/171 (11%), Positives = 40/171 (23%), Gaps = 47/171 (27%)
Query: 62 TSRRGEPSVLQCEAK---GEKPIGILWNMNNKRLDP-----------KSDNRYTIREEIL 107
T+ GE L + I + W + + + +I
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
+ L + + C +K GE
Sbjct: 62 RSANTFFLVVTAANISHDGNYLCRMKL-------------------------------GE 90
Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
+ +K LS P ++ ++ + + C P P + W
Sbjct: 91 TEVTKQEHLSV--VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWL 139
Score = 31.9 bits (72), Expect = 0.34
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
P ++ ++ + + C P P + W
Sbjct: 102 VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWL 139
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 52.9 bits (126), Expect = 5e-08
Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 9/141 (6%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
+R++ + + P ++V + + +SW + H+
Sbjct: 77 IVTLRVLCREGVRWRVMAIQDFKPFENLRLM-APISLQVVHVETHRCNISWEISQASHYF 135
Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG 338
+ +E + K+ + L +L TQY V+ G
Sbjct: 136 ERHLEFEARTLSPGHT----WEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEF 191
Query: 339 PM----SEEVKQYTAEGTPEQ 355
S+ + T +
Sbjct: 192 TTWSPWSQPLAFRTKPAALGK 212
Score = 29.0 bits (64), Expect = 3.1
Identities = 13/133 (9%), Positives = 27/133 (20%), Gaps = 2/133 (1%)
Query: 268 SWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSV 327
WS + + L + L T ++
Sbjct: 21 VWSQDGALQDTSCQVHAWPDRRRWQQTCELLPVSQASWACNLILGAPDSQKLTTVDIVTL 80
Query: 328 VVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIK 387
V + M+ + + P + + +SW
Sbjct: 81 RVLCREGVRWRVMAIQDFKPFENLRLM-APISLQVVHVETHRCNISWEISQASHYFERHL 139
Query: 388 GYKVVY-GPSDTW 399
++ P TW
Sbjct: 140 EFEARTLSPGHTW 152
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 52.0 bits (124), Expect = 6e-08
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
PP + ++ GE ++L C+++ W D N R +
Sbjct: 81 HGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVS 140
Query: 108 PNGVLSDLSIKR-TERGDSALFTCE 131
+ S+L I+ D + C
Sbjct: 141 SSQGRSELHIENLNMEADPGQYRCN 165
Score = 38.9 bits (90), Expect = 0.002
Identities = 18/161 (11%), Positives = 28/161 (17%), Gaps = 52/161 (32%)
Query: 60 NQTSRRGEPSVLQCEAKGEKP--IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSI 117
G +L C G W L +
Sbjct: 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------------QKTEF 53
Query: 118 KRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLS 177
K ++C P T +
Sbjct: 54 KVDSDDQWGEYSC------------------------------------VFLPEPMGTAN 77
Query: 178 PSNRVPARIASFNDNFTATYTEDIKLPCLTVGVP-APEIIW 217
P R+ + + E L C + VP + W
Sbjct: 78 IQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAW 118
Score = 27.7 bits (61), Expect = 6.8
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVP-APEIIW 539
P R+ + + E L C + VP + W
Sbjct: 81 HGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAW 118
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 49.7 bits (119), Expect = 6e-08
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 50 APPEFEIKLR-NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
F+ KL +G L E + W N + + S ++Y
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVELADHDAE-VKWLKNGQEIQM-SGSKYIFESI--- 68
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKIS 138
G L+I + D A + C + +K S
Sbjct: 69 -GAKRTLTISQCSLADDAAYQCVVGGEKCS 97
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 52.9 bits (126), Expect = 7e-08
Identities = 18/151 (11%), Positives = 49/151 (32%), Gaps = 5/151 (3%)
Query: 228 NEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVG 287
NE +++ T + + P ++ + + +W +
Sbjct: 16 NEDTTADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWQSSSEPQP----TNLTLH 71
Query: 288 YKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQY 347
Y ++D + + + E L + + + VVQ + P + ++ +
Sbjct: 72 YWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKL 131
Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPP 378
P P++ T L+ + ++W +
Sbjct: 132 QNLVIPW-APENLTLHKLSESQLELNWNNRF 161
Score = 50.2 bits (119), Expect = 5e-07
Identities = 18/152 (11%), Positives = 51/152 (33%), Gaps = 19/152 (12%)
Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
+++T+ +++ + + L P P ++ + ++ L+++W+ +
Sbjct: 107 LYQTFVVQLQDPR--EPRRQATQMLKLQNLVIPW-APENLTLHKLSESQLELNWNNRFLN 163
Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA---L 332
H + V Y+ + + H +L S+ +Y+ V++
Sbjct: 164 H----CLEHLVQYRTDW-------DHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNP 212
Query: 333 NKLGPGPMSE--EVKQYTAEGTPEQPPQDNTC 362
SE + + + E P +
Sbjct: 213 LCGSAQHWSEWSHPIHWGSNTSKENPRTGHHH 244
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 49.7 bits (119), Expect = 7e-08
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 8/94 (8%)
Query: 48 SSAPPEFEIKLRNQTS-RRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
S+ F L +G E K + W N + + P +Y +
Sbjct: 4 GSSGAAFAKILDPAYQVDKGGRVRFVVELADPKLE-VKWYKNGQEIRP--STKYIFEHK- 59
Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
G L I + D + + +K S++
Sbjct: 60 ---GCQRILFINNCQMTDDSEYYVTAGDEKCSTE 90
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 49.2 bits (118), Expect = 9e-08
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
P F L++ G+ VLQC +G I W +N + + R T +
Sbjct: 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQY---ARSTCEAGV--- 63
Query: 110 GVLSDLSIKRTERGDSALFTCE 131
++L I+ D +TC
Sbjct: 64 ---AELHIQDALPEDHGTYTCL 82
Score = 28.1 bits (63), Expect = 2.3
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIW 217
+ +D L C G P P I W
Sbjct: 20 DCAVIEGQDFVLQCSVRGTPVPRITW 45
Score = 28.1 bits (63), Expect = 2.3
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIW 539
+ +D L C G P P I W
Sbjct: 20 DCAVIEGQDFVLQCSVRGTPVPRITW 45
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 51.4 bits (123), Expect = 1e-07
Identities = 22/173 (12%), Positives = 43/173 (24%), Gaps = 37/173 (21%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
F N T RG L+C+ + + +P + W + + L+ + +
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 110 GVLSD---LSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
L I + D+ + C
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCL-----------------------------VFLGHQ 92
Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAP-EIIWK 218
S+ + ++ T L C G P P +++W
Sbjct: 93 TFV-SQPGYVGL--EGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWL 142
Score = 50.7 bits (121), Expect = 2e-07
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 14/83 (16%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILP 108
P F + ++T P L C+A+G +P+ +LW + L + P
Sbjct: 105 GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH--------GP 156
Query: 109 NGVLSDLSIKRTERGDSALFTCE 131
L + ++ F+CE
Sbjct: 157 QRSLHVPGLN-----KTSSFSCE 174
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 51.5 bits (123), Expect = 1e-07
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Query: 46 LLSSAPPEFEIKLRNQTSRRGEPSVLQC-EAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
L+ PP ++ G +VL C E G P W + + +
Sbjct: 102 LIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSN 161
Query: 105 E-ILPNGVLSDLSIKRTERGDSALFTCE 131
+ N +L D+ ++CE
Sbjct: 162 SSYVLNPTTGELVFDPLSASDTGEYSCE 189
Score = 50.0 bits (119), Expect = 4e-07
Identities = 26/173 (15%), Positives = 35/173 (20%), Gaps = 34/173 (19%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
+ P L C G + W + I
Sbjct: 1 AMGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYE 60
Query: 108 PNGVLSD--LSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI 165
++ K R D+ +TC S
Sbjct: 61 DRVTFLPTGITFKSVTREDTGTYTCM-----------------------------VSEEG 91
Query: 166 GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCL-TVGVPAPEIIW 217
G V L VP + N +AT L C G P E W
Sbjct: 92 GNSYGEVKVKL--IVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTW 142
Score = 31.1 bits (70), Expect = 0.57
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 10/67 (14%)
Query: 194 TATYTEDIKLPCLTVGVPAPEIIWK----------TYHIRIVAENEIGSSEPSDTVTILT 243
+KL C G +P + WK Y+ +I A E + +T +
Sbjct: 15 RIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKS 74
Query: 244 AEEAPSG 250
+G
Sbjct: 75 VTREDTG 81
Score = 29.9 bits (67), Expect = 1.5
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 516 TATYTEDIKLPCLTVGVPAPEIIWK 540
+KL C G +P + WK
Sbjct: 15 RIPENNPVKLSCAYSGFSSPRVEWK 39
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 51.6 bits (123), Expect = 1e-07
Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 9/116 (7%)
Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
+ +R+ A + + + +AP G + E+ + + W PP
Sbjct: 93 SFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGH---VVLRWLPPPET 149
Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA 331
I+ Y V + LS+L+ T+Y+ V+A
Sbjct: 150 PMTSHIR-YEVDVSAGQGAGSVQRVEIL-----EGRTECVLSNLRGRTRYTFAVRA 199
Score = 45.5 bits (107), Expect = 1e-05
Identities = 19/179 (10%), Positives = 41/179 (22%), Gaps = 10/179 (5%)
Query: 233 SEPSDTVTILTAEEA--PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
P + ++ A + P + L W Y Y+
Sbjct: 3 FPPPNPDPKFESKAALLAARGPEELLCFTERLEDLVCFWEEAA--SAGVGPGQYSFSYQL 60
Query: 291 TSTDKP--FLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
L + L + ++ + V A + + +
Sbjct: 61 EDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVV 120
Query: 349 AEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDI 407
P + + + W+ PP I+ Y+V + +I
Sbjct: 121 LLDAPVGLVARLADES---GHVVLRWLPPPETPMTSHIR-YEVDVSAGQGAGSVQRVEI 175
Score = 30.8 bits (69), Expect = 0.87
Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 2/82 (2%)
Query: 334 KLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
+ P P + + A + P++ C T + + W Y Y
Sbjct: 1 REFPPPNPDPKFESKAALLAARGPEELLCFTERLEDLVCFW-EEAASA-GVGPGQYSFSY 58
Query: 394 GPSDTWYGDPKTDICTDIRASW 415
D + + R +
Sbjct: 59 QLEDEPWKLCRLHQAPTARGAV 80
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 48.2 bits (115), Expect = 3e-07
Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
+ + R + G + L CE + + W + K+L S ++ + G
Sbjct: 11 FAKEQPAHREVQAEAGASATLSCEVAQAQTE-VTWYKDGKKL--SSSSKVRVEAV----G 63
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKIS 138
L +++ + ++ ++CE Q++S
Sbjct: 64 CTRRLVVQQAGQAEAGEYSCEAGGQQLS 91
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 47.8 bits (114), Expect = 3e-07
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
+ +++ + G+ L+C + + I W + +L NR I E
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQLRCRLRDDVQS-INWLRDGVQLAE--SNRTRITGEE--- 55
Query: 110 GVLSDLSIKRTERGDSALFTCE 131
+ ++ + DS L+ C
Sbjct: 56 -----VEVQDSVPADSGLYACV 72
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 50.6 bits (120), Expect = 3e-07
Identities = 26/179 (14%), Positives = 48/179 (26%), Gaps = 8/179 (4%)
Query: 228 NEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH--WNGVIQGYY 285
+ + S + SG P K + ++ T W+ G IQ +Y
Sbjct: 9 AILSRAPWSLQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFY 68
Query: 286 VGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG-PGPMSEEV 344
+ + E D+ + S Y + + + S +
Sbjct: 69 TRRNTQEWTQEW-KECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDE 127
Query: 345 KQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPL--ITANGVIKGYKVVYGP--SDTW 399
N T I+V W +P I ++ Y++ Y W
Sbjct: 128 IVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKW 186
Score = 48.7 bits (115), Expect = 1e-06
Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 10/119 (8%)
Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNT-LKVSWSPPER 274
I Y I++ + + I+ + + T + V T + ++V W P
Sbjct: 103 IAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRN 162
Query: 275 DHWNG--VIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA 331
++ Y + YKE + K + + + + + SLK +Y V V++
Sbjct: 163 ADIQKGWMVLEYELQYKEVNETKWKMMDPI-------LTTSVPVYSLKVDKEYEVRVRS 214
Score = 34.0 bits (77), Expect = 0.074
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 1/78 (1%)
Query: 333 NKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVV 392
L P S + + P+ C + +T W + + ++
Sbjct: 9 AILSRAPWSLQSVNPGLKTNSSGEPKFTKCRSPERETFSCHW-TDEVHHGTKNEGPIQLF 67
Query: 393 YGPSDTWYGDPKTDICTD 410
Y +T + C D
Sbjct: 68 YTRRNTQEWTQEWKECPD 85
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 47.3 bits (113), Expect = 4e-07
Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 57 KLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDL 115
++ + G C+ + + + W ++L ++ +Y I E +GV L
Sbjct: 7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQL--ENSEKYEITYE---DGVAI-L 60
Query: 116 SIKRTERGDSALFTCEIK 133
+K + D + C++
Sbjct: 61 YVKDITKLDDGTYRCKVV 78
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 50.9 bits (120), Expect = 4e-07
Identities = 39/308 (12%), Positives = 91/308 (29%), Gaps = 30/308 (9%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
+ ++L GE VL C+ + GI W ++ S TI+ + +
Sbjct: 6 KDVYVVELDWYPDAPGEMVVLTCD--TPEEDGITWTLDQSSEVLGSGKTLTIQVKEFGDA 63
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI----- 165
S L + + S+ + + K S
Sbjct: 64 GQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWL 123
Query: 166 --GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTE------DIKLPCLTVGVPAPEIIW 217
+ +V S + P + +A + + C
Sbjct: 124 TTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEES 183
Query: 218 KTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNT-LKVSWSPPER-- 274
+ + A +++ T + + PP +++++ + ++VSW P+
Sbjct: 184 LPIEVMVDAVHKLKYE--QYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWS 241
Query: 275 DHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNK 334
+ + V + S + + F+ + T +++ S+ V+A ++
Sbjct: 242 TPHSYFSLTFCVQVQGKSKRE---KKDRVFTDK-------TSATVICRKNASISVRAQDR 291
Query: 335 LGPGPMSE 342
SE
Sbjct: 292 YYSSSWSE 299
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 47.4 bits (113), Expect = 4e-07
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 9/93 (9%)
Query: 48 SSAPPEFEI--KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
SS P + T E VL CE W + +++ + ++ +
Sbjct: 5 SSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKV--EESELLVVKMD 61
Query: 106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS 138
G L + + DS F C +
Sbjct: 62 ----GRKHRLILPEAKVQDSGEFECRTEGVSAF 90
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 49.2 bits (117), Expect = 5e-07
Identities = 25/181 (13%), Positives = 53/181 (29%), Gaps = 54/181 (29%)
Query: 62 TSRRGEPSVLQCEAKGEKPIGILWNMNNKRL------------DPKSDNRYTIREEILPN 109
++G+ L C A +K I W +N+ K ++R R +
Sbjct: 6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
G L IK + DS + CE++ QK Q + +
Sbjct: 66 GNFP-LIIKNLKIEDSDTYICEVEDQKEEVQLLVF------------------------- 99
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENE 229
+T + + + + L + +P + ++ + + +
Sbjct: 100 ---GLTANSDTHL-------------LQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK 143
Query: 230 I 230
Sbjct: 144 T 144
Score = 28.8 bits (64), Expect = 2.8
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 521 EDIKLPCLTVGVPAPEIIWK 540
+ ++L C + + WK
Sbjct: 11 DTVELTCTASQKKSIQFHWK 30
Score = 28.4 bits (63), Expect = 4.8
Identities = 2/21 (9%), Positives = 9/21 (42%)
Query: 521 EDIKLPCLTVGVPAPEIIWKT 541
+ + L + +P + ++
Sbjct: 113 QSLTLTLESPPGSSPSVQCRS 133
Score = 28.0 bits (62), Expect = 6.2
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 16/76 (21%)
Query: 60 NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKR 119
+ +G+ L E+ + +S I+ LS+ +
Sbjct: 106 DTHLLQGQSLTLTLESPPGSSPSVQC---------RSPRGKNIQGG-------KTLSVSQ 149
Query: 120 TERGDSALFTCEIKSQ 135
E DS +TC +
Sbjct: 150 LELQDSGTWTCTVLQN 165
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 49.7 bits (118), Expect = 6e-07
Identities = 18/155 (11%), Positives = 37/155 (23%), Gaps = 23/155 (14%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHW- 277
Y+ R+ A + G S T + + PP + + ++++ P
Sbjct: 74 LYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPD-VTCISKV-RSIQMIVHPTPTPIRA 131
Query: 278 -NGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
+G + + GK+ L T++ + L
Sbjct: 132 GDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFGLTPDTEFLGTIMILVPTW 191
Query: 337 P--GPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQT 369
TL +T
Sbjct: 192 AKESAPYMCR-----------------VKTLPDRT 209
Score = 40.5 bits (94), Expect = 6e-04
Identities = 24/148 (16%), Positives = 52/148 (35%), Gaps = 6/148 (4%)
Query: 246 EAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFS 305
E PS H+K ++++ + ++W + V Y + YK +
Sbjct: 2 EDPSDLLQHVKFQSSNFENI-LTWDSGPEGTPDTV---YSIEYKTYGERDWVAKKGCQRI 57
Query: 306 KEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTL 365
K +LT+ + Y V A++ G + + + T +PP + +
Sbjct: 58 TR--KSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPDVTCISKV 115
Query: 366 TSQTIRVSWVSPPLITANGVIKGYKVVY 393
S + V P+ +G + ++
Sbjct: 116 RSIQMIVHPTPTPIRAGDGHRLTLEDIF 143
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 50.5 bits (120), Expect = 6e-07
Identities = 30/228 (13%), Positives = 57/228 (25%), Gaps = 41/228 (17%)
Query: 47 LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG-----ILWNMNNKRLDPKSDNRYT 101
+ Q VL C E I W ++ LD ++ +
Sbjct: 116 FENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS 175
Query: 102 IREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTA 161
+R + L + D+ + C +T+ G + + +T
Sbjct: 176 VRGT-------THLLVHDVALEDAGYYRCV----------LTFAHEGQQ------YNITR 212
Query: 162 STNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPC---LTVGVPAPEIIWK 218
S + I S +A+ + +PC L G P ++W
Sbjct: 213 SIEL--------RIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWW 264
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT-HI-KVEATDQNT 264
T + + G + V D +
Sbjct: 265 TANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHM 312
Score = 47.4 bits (112), Expect = 6e-06
Identities = 21/181 (11%), Positives = 43/181 (23%), Gaps = 49/181 (27%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCE-------AKGEKPIGILWNMNNKRLDPKSDNRYTI 102
+ + + GEP L+C A I + W+ N+ + +
Sbjct: 17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM 76
Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
+G L + + DS + C ++
Sbjct: 77 ---WAQDGA---LWLLPALQEDSGTYVCTTRN---------------------------- 102
Query: 163 TNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTV-----GVPAPEIIW 217
++ L A + + T + L C + +I W
Sbjct: 103 ---ASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQW 159
Query: 218 K 218
Sbjct: 160 Y 160
Score = 37.7 bits (87), Expect = 0.008
Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 11/98 (11%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEA---KGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
P L+ ++ G + C+ G +LW N + + E
Sbjct: 223 EETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTE 282
Query: 105 ----EILPNG---VLSDLSIKRTERGDS-ALFTCEIKS 134
E N + L R D F C + +
Sbjct: 283 GPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHN 320
Score = 28.9 bits (64), Expect = 4.7
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 500 KNDRVPARIASFNDNFTATYTEDIKLPC---LTVGVPAPEIIWKTF 542
K + I S +A+ + +PC L G P ++W T
Sbjct: 221 KKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTA 266
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 46.7 bits (111), Expect = 6e-07
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 43 PPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
P L + P +++ + G+ L+C + + I W + +L NR I
Sbjct: 1 PTLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDVQS-INWLRDGVQLVE--SNRTRI 57
Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCE 131
E + ++ + DS L+ C
Sbjct: 58 TGEE--------VEVRDSIPADSGLYACV 78
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 50.1 bits (119), Expect = 9e-07
Identities = 27/205 (13%), Positives = 53/205 (25%), Gaps = 44/205 (21%)
Query: 13 RILLGRVLLPIGESSFHFDPELLNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQ 72
+ + G + S P ++++ N + G+ +L+
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLR 179
Query: 73 CEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEI 132
C+ +G W + + ++ LP+ L T + TC
Sbjct: 180 CQVEGRGLEQAGWILTELEQ-----SATVMKSGGLPSLGL--TLANVTSDLNRKNVTCWA 232
Query: 133 KSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDN 192
N G+ +V ++ S +
Sbjct: 233 ------------------------------ENDV-GRAEVSVQVNVS------FPASVQL 255
Query: 193 FTATYTEDIKLPCLTVGVPAPEIIW 217
TA +P G PAP + W
Sbjct: 256 HTAVEMHHWCIPFSVDGQPAPSLRW 280
Score = 37.0 bits (85), Expect = 0.011
Identities = 10/58 (17%), Positives = 18/58 (31%)
Query: 185 RIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTIL 242
+ N + +D+ L C G + W + A PS +T+
Sbjct: 160 TLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLA 217
Score = 32.0 bits (72), Expect = 0.50
Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 7/83 (8%)
Query: 52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKS----DNRYTIREEIL 107
F ++ T+ + G+ + W N L+ S + E +
Sbjct: 247 VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 306
Query: 108 PNGVLSDLSIKRTERGDSALFTC 130
+G L + + ++ +T
Sbjct: 307 RHGC---LRLNQPTHVNNGNYTL 326
Score = 30.1 bits (67), Expect = 2.0
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 507 RIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT 541
+ N + +D+ L C G + W
Sbjct: 160 TLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWIL 194
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 9e-07
Identities = 64/437 (14%), Positives = 118/437 (27%), Gaps = 161/437 (36%)
Query: 33 ELLNPSFNG---FPPLLLSSAPPEFEIK--LRNQTSRR----------GEPSVLQCEA-- 75
E + +N F +S P +++ L + G+ + + +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-TWVALDVCL 172
Query: 76 ----KGEKPIGILW-NMNNK---------------RLDPK----SDNRYTIREEI----- 106
+ + I W N+ N ++DP SD+ I+ I
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 107 ----------LPNG--VLSDLSIKR-------------TERGDSALFTCEIKSQKISSQQ 141
N VL ++ + T R + + + +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR-FKQVTD-FLSAATTTHIS 290
Query: 142 MTYEASGLKKKQNY-IFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATY--- 197
+ + + L + + + P + +T +P R + IA + AT+
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVLTTNP--RRLSIIAESIRDGLATWDNW 347
Query: 198 --------TEDIK--LPCLT-----------------VGVPAP--EIIW---KTYHIRIV 225
T I+ L L +P +IW + +V
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 226 AENEIGSS-----EPSDTVTI-----LTAEEAPSGPPTHIKV-------EATDQNTLKVS 268
S T++I + + H + + D + L
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL--- 464
Query: 269 WSPPERDHWNGVIQGY---YVGY---KETSTDKPFLFETV--DFSKEEGKEHHL------ 314
PP D Y ++G+ ++ LF V DF E K H
Sbjct: 465 -IPPYLD-------QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 315 ------TLSSLKTYTQY 325
TL LK Y Y
Sbjct: 517 SGSILNTLQQLKFYKPY 533
Score = 29.8 bits (66), Expect = 2.9
Identities = 25/146 (17%), Positives = 43/146 (29%), Gaps = 44/146 (30%)
Query: 25 ESSF-HFDPELLNPSFNG---FPPLLLSSAP-PEFEIKLRNQTSRRGEPSVLQ---CEAK 76
ESS +P F+ FPP SA P +L +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPP----SAHIPT---------------ILLSLIWFDVI 400
Query: 77 GEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK 136
+ ++ ++ L K TI +P+ L +K + AL +
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTIS---IPSI---YLELKVKLENEYAL------HRS 448
Query: 137 ISSQ---QMTYEASGLKKKQ--NYIF 157
I T+++ L Y +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFY 474
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 46.3 bits (110), Expect = 1e-06
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 9/88 (10%)
Query: 48 SSAPPEF----EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIR 103
+ P + +++ R +C A G + W N K ++R
Sbjct: 1 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGY 58
Query: 104 EEILPNGVLSDLSIKRTERGDSALFTCE 131
+ + L ++ D +TC
Sbjct: 59 KVRNQHWS---LIMESVVPSDKGNYTCV 83
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 48.2 bits (114), Expect = 1e-06
Identities = 14/116 (12%), Positives = 43/116 (37%), Gaps = 14/116 (12%)
Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
+++T+ +++ + + L P P ++ + ++ L+++W+ +
Sbjct: 69 LYQTFVVQLQDPR--EPRRQATQMLKLQNLVIPW-APENLTLHKLSESQLELNWNNRFLN 125
Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA 331
H + V Y+ + + H +L S+ +Y+ V++
Sbjct: 126 H----CLEHLVQYRTDW-------DHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRS 170
Score = 42.4 bits (99), Expect = 1e-04
Identities = 15/128 (11%), Positives = 41/128 (32%), Gaps = 5/128 (3%)
Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
P ++ + + +W + Y ++D + + + E
Sbjct: 1 PLPEVQCFVFNVEYMNCTWQSSS----EPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEI 56
Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTI 370
L + + + VVQ + P + ++ + P P++ T L+ +
Sbjct: 57 TSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPW-APENLTLHKLSESQL 115
Query: 371 RVSWVSPP 378
++W +
Sbjct: 116 ELNWNNRF 123
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 49.0 bits (116), Expect = 2e-06
Identities = 21/177 (11%), Positives = 39/177 (22%), Gaps = 38/177 (21%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQC------EAKGEKPIGILWNMNNKRLDPKSDNRYT 101
+ Q L C + + + + W + K L DN +
Sbjct: 100 EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL--DNIHF 157
Query: 102 IREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTA 161
+ L + +TC + Q + +T
Sbjct: 158 SGVK-------DRLIVMNVAEKHRGNYTCHASYTYLGKQ----------------YPITR 194
Query: 162 STNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
P ++ N+ I+L C G + WK
Sbjct: 195 VIEF-------ITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWK 244
Score = 42.0 bits (98), Expect = 3e-04
Identities = 23/196 (11%), Positives = 44/196 (22%), Gaps = 43/196 (21%)
Query: 62 TSRRGEPSVLQCEAKGEKPIG-ILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRT 120
S E V C + G I W ++ + ++ I L
Sbjct: 16 VSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRI---HQHKEKLW---FVPA 69
Query: 121 ERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSN 180
+ DS + C + + + +
Sbjct: 70 KVEDSGHYYC-----------------------------VVRNSSYCLRIKISAKFVENE 100
Query: 181 RVPARIASFNDNFTATYTEDIKLPCLTV------GVPAPEIIWKTYHIRIVAENEIGSSE 234
A D L C + P++ W ++ +N S
Sbjct: 101 PNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH-FSG 159
Query: 235 PSDTVTILTAEEAPSG 250
D + ++ E G
Sbjct: 160 VKDRLIVMNVAEKHRG 175
Score = 42.0 bits (98), Expect = 3e-04
Identities = 14/88 (15%), Positives = 22/88 (25%), Gaps = 7/88 (7%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL--- 107
P G L C G+ W N +D +
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 268
Query: 108 ---PNGVLSDLSIKRTERGDSA-LFTCE 131
+ +++ L+I E FTC
Sbjct: 269 NKRRSTLITVLNISEIESRFYKHPFTCF 296
Score = 31.2 bits (70), Expect = 0.88
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 502 DRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
P ++ N+ I+L C G + WK
Sbjct: 206 PTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWK 244
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 46.6 bits (110), Expect = 2e-06
Identities = 16/91 (17%), Positives = 23/91 (25%), Gaps = 7/91 (7%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPK-------SDNRY 100
S F +Q G L CEA G I W + + +
Sbjct: 18 GSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDR 77
Query: 101 TIREEILPNGVLSDLSIKRTERGDSALFTCE 131
S +SI D+ + C
Sbjct: 78 VHIHATYHQHAASTISIDTLVEEDTGTYECR 108
Score = 29.6 bits (66), Expect = 1.2
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIWK 218
+ ++L C VG P PEI W
Sbjct: 30 SQQRWVGGSVELHCEAVGSPVPEIQWW 56
Score = 29.6 bits (66), Expect = 1.2
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ ++L C VG P PEI W
Sbjct: 30 SQQRWVGGSVELHCEAVGSPVPEIQWW 56
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 45.5 bits (108), Expect = 2e-06
Identities = 13/90 (14%), Positives = 23/90 (25%), Gaps = 15/90 (16%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
+ ++ G L CE + I W + L + P+
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL------------PLPPSP 57
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
V L + D ++C Q
Sbjct: 58 V---LILPEIGPQDQGTYSCVATHSSHGPQ 84
Score = 31.6 bits (72), Expect = 0.14
Identities = 11/77 (14%), Positives = 19/77 (24%), Gaps = 23/77 (29%)
Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIWK------------TYHIRIV-----------AEN 228
+ L C P+P+I W + + A +
Sbjct: 19 GGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATH 78
Query: 229 EIGSSEPSDTVTILTAE 245
+ S V+I E
Sbjct: 79 SSHGPQESRAVSISIIE 95
Score = 27.4 bits (61), Expect = 3.8
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 514 NFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ L C P+P+I W
Sbjct: 19 GGAVAPGGTVTLTCEVPAQPSPQIHWM 45
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 45.1 bits (107), Expect = 3e-06
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
S+ + + R E VL CE + W + + + +++E
Sbjct: 11 SSWIVYPSGKVYVAAVRLERVVLTCELCRPWAE-VRWTKDGEEVVE--SPALLLQKE--- 64
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
+ L + + DS + CEI + S
Sbjct: 65 -DTVRRLVLPAVQLEDSGEYLCEIDDESASFT 95
Score = 26.6 bits (59), Expect = 8.7
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 496 SDKCKNDRVPARI--ASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
S V + I S A E + L C + P E+ W
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTC-ELCRPWAEVRW 46
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 48.2 bits (114), Expect = 3e-06
Identities = 32/220 (14%), Positives = 54/220 (24%), Gaps = 61/220 (27%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRYTIREEILP 108
A P+ +++ + +C + G +P I W+ + + S + +
Sbjct: 116 AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTV-- 173
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
V S + + + D TC E
Sbjct: 174 -TVTSLWILVPSSQVDGKNVTC-----------------------------KVEHESFEK 203
Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAP-EIIWK--------- 218
V L+ I S DN + L C P P W
Sbjct: 204 PQLLTVNLTVYYPPEVSI-SGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF 262
Query: 219 ------TYHIRIV-----------AENEIGSSEPSDTVTI 241
IR V N +G+ + TV +
Sbjct: 263 AVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 37.4 bits (86), Expect = 0.010
Identities = 23/201 (11%), Positives = 46/201 (22%), Gaps = 51/201 (25%)
Query: 59 RNQTSRRGEPSVLQCEAKGEKP-----IGILWNMNNKRLD-----------PKSDNRYTI 102
G+ L C + + W + + R
Sbjct: 8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 67
Query: 103 REEILPNGVLS-DLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTA 161
L + + L + D +TC
Sbjct: 68 VAARLGAELRNASLRMFGLRVEDEGNYTCLF----------------------------- 98
Query: 162 STNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTV-GVPAPEIIWKTY 220
+G S ++ L + + T C++ G P +I W +
Sbjct: 99 -VTFPQGSRSVDIWLRV--LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSD 155
Query: 221 HIRIVAENEIGSSEPSDTVTI 241
+ +++ S TVT+
Sbjct: 156 LGGMPNTSQV-PGFLSGTVTV 175
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 47.9 bits (114), Expect = 6e-06
Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 12/121 (9%)
Query: 238 TVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPF 297
V + E P P +E + +SW PP D ++ Y + +E
Sbjct: 3 MVADVPEPEPPRFPI----IENILDEAVILSWKPPALDG-GSLVTNYTIEKREAMGGSWS 57
Query: 298 LFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
++ + T+ L+ QY + A NK G E G +
Sbjct: 58 PCAKSRYT-------YTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRR 110
Query: 358 Q 358
+
Sbjct: 111 R 111
Score = 39.0 bits (91), Expect = 0.004
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
P F +K G+ + C P + W+ +++ L +Y R G
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQ--SVKYMKRYN----G 535
Query: 111 VLSDLSIKRTERGDSALFTCEIKS 134
L+I R + D +T K+
Sbjct: 536 NDYGLTINRVKGDDKGEYTVRAKN 559
Score = 32.1 bits (73), Expect = 0.54
Identities = 14/80 (17%), Positives = 23/80 (28%)
Query: 218 KTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHW 277
K Y RI+AEN+ G S+P + + V+ + D++
Sbjct: 76 KQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYDNY 135
Query: 278 NGVIQGYYVGYKETSTDKPF 297
I Y
Sbjct: 136 VFDIWKQYYPQPVEIKHDHV 155
Score = 29.8 bits (67), Expect = 2.4
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY--GPSDTW 399
PE PP+ + + + +SW PP + ++ Y + +W
Sbjct: 5 ADVPEPE-PPRFPIIENILDEAVILSW-KPPALDGGSLVTNYTIEKREAMGGSW 56
Score = 28.3 bits (63), Expect = 7.5
Identities = 5/47 (10%), Positives = 9/47 (19%)
Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
S + R + C + P + W
Sbjct: 470 SIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTW 516
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 47.0 bits (111), Expect = 6e-06
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 2/89 (2%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRL-DPKSDNRYTIREEI 106
A P + + ++G+ + C K + +W N + +
Sbjct: 186 KAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGD 245
Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQ 135
L+I DS +F C +
Sbjct: 246 FNYERQETLTISSARVDDSGVFMCYANNT 274
Score = 43.2 bits (101), Expect = 1e-04
Identities = 21/195 (10%), Positives = 43/195 (22%), Gaps = 53/195 (27%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
+PP G+ L C + W + + +
Sbjct: 11 SPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFNEMVENKK---------- 56
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
++ ++ E + +TC + SS Y+F
Sbjct: 57 ---NEWIQEKAEATRTGTYTCSNSNGLTSSI--------------YVFV----------- 88
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENE 229
R PA++ D + C + + + +
Sbjct: 89 -----------RDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDL 137
Query: 230 IGSSEPSDTVTILTA 244
P +TI
Sbjct: 138 TFVPNPKAGITIKNV 152
Score = 38.9 bits (90), Expect = 0.003
Identities = 11/169 (6%), Positives = 39/169 (23%), Gaps = 36/169 (21%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
P + + + ++++C + + + P +D + P
Sbjct: 91 PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLP-TDLTFV----PNPKA 145
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
++ ++KR C + +
Sbjct: 146 GITIKNVKRAY--HRLCVRCAAQRDGTWLHSDKF-------------------------- 177
Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAP-EIIWK 218
+ + + + ++ + + + C V +W
Sbjct: 178 --TLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWL 224
Score = 28.9 bits (64), Expect = 3.5
Identities = 5/38 (13%), Positives = 9/38 (23%)
Query: 503 RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
R PA++ D + C +
Sbjct: 89 RDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLI 126
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 47.1 bits (111), Expect = 9e-06
Identities = 25/181 (13%), Positives = 53/181 (29%), Gaps = 54/181 (29%)
Query: 62 TSRRGEPSVLQCEAKGEKPIGILWNMNNKRL------------DPKSDNRYTIREEILPN 109
++G+ L C A +K I W +N+ K ++R R +
Sbjct: 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
G L IK + DS + CE++ QK Q + +
Sbjct: 65 GNFP-LIIKNLKIEDSDTYICEVEDQKEEVQLLVF------------------------- 98
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENE 229
+T + + + + L + +P + ++ + + +
Sbjct: 99 ---GLTANSDTHLLQG-------------QSLTLTLESPPGSSPSVQCRSPRGKNIQGGK 142
Query: 230 I 230
Sbjct: 143 T 143
Score = 29.8 bits (66), Expect = 2.7
Identities = 25/234 (10%), Positives = 63/234 (26%), Gaps = 45/234 (19%)
Query: 60 NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKR 119
+ +G+ L E+ + + R + + G LS+ +
Sbjct: 105 DTHLLQGQSLTLTLESPPGSSPSVQC--------------RSPRGKNIQGG--KTLSVSQ 148
Query: 120 TERGDSALFTCEIKSQ----------KISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
E DS +TC + + + Q K+ + F + + +
Sbjct: 149 LELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLT 208
Query: 170 PSKNVTL----SPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK------- 218
S + + S++ N + + +P + +
Sbjct: 209 GSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAG 268
Query: 219 --TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWS 270
+ E + G + ++ A + ++ E + K+ S
Sbjct: 269 SGNL--TLALEAKTGKLHQEVNLVVMRA----TQLQKNLTCEVWGPTSPKLMLS 316
Score = 27.8 bits (61), Expect = 9.1
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 521 EDIKLPCLTVGVPAPEIIWK 540
+ ++L C + + WK
Sbjct: 10 DTVELTCTASQKKSIQFHWK 29
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 43.5 bits (103), Expect = 1e-05
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 51 PPEFEI--KLRNQTSRR-GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
PP+ + LR R+ GE L +G+ ++W LD +R +R
Sbjct: 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT---SRVHVRTS-- 75
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIK 133
+ +++ R DS + ++
Sbjct: 76 --DFDTVFFVRQAARSDSGEYELSVQ 99
Score = 33.1 bits (76), Expect = 0.057
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 167 EGQPSKNVTLSPSNRVPARI---ASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIR 223
G ++ VT+ P +I + E + L G P P+++W
Sbjct: 6 SGTLAQPVTIREI-AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVW--TKGG 62
Query: 224 IVAENEIGSSEPSDTVTILTAEEA 247
+ SD T+ +A
Sbjct: 63 APLDTSRVHVRTSDFDTVFFVRQA 86
Score = 30.8 bits (70), Expect = 0.35
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 498 KCKNDRVPARI---ASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
+ P +I + E + L G P P+++W
Sbjct: 14 TIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWT 59
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 43.5 bits (102), Expect = 1e-05
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 4/90 (4%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKG--EKPIGILWNMNNKRLDPKSDNRYTIREEI 106
P+ ++ Q++ G C A + P+ W +N+ L Y
Sbjct: 8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQ 67
Query: 107 LPNGVL--SDLSIKRTERGDSALFTCEIKS 134
+ + L ++ E + C I +
Sbjct: 68 GGELMEYTTILRLRNVEFTSEGXYQCVISN 97
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 45.7 bits (107), Expect = 1e-05
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 14/136 (10%)
Query: 214 EIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPE 273
+ + +EI +E + + T+ E P K ++ + V+W+ PE
Sbjct: 116 SVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPE 175
Query: 274 RDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALN 333
++GY + ++ E T L +T Y+ + A
Sbjct: 176 T---TEGLEGYILYKDGKKV-----------AEIGKDETSYTFKKLNRHTIYNFKIAAKY 221
Query: 334 KLGPGPMSEEVKQYTA 349
G E + TA
Sbjct: 222 SNGEVSSKESLTLRTA 237
Score = 36.4 bits (83), Expect = 0.014
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 133 KSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVT 175
K +I + +Y L + Y F + A + GE +++T
Sbjct: 191 KVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLT 233
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 46.0 bits (108), Expect = 2e-05
Identities = 28/205 (13%), Positives = 45/205 (21%), Gaps = 48/205 (23%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCE-AKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
PP + + L C + I W NN+ L D +
Sbjct: 127 KPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELII--DGTKYSQSG--- 181
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
+L I E DS + C +
Sbjct: 182 ----QNLIIHNPELEDSGRYDCY-----------------------------VHYDDVRI 208
Query: 169 QPSKNVTLSPSNRV-----PARIASFNDNFTATYTEDIKLPCLTVGVPAPE----IIWKT 219
+ V+ V + T E + C V I W+
Sbjct: 209 KNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWEN 268
Query: 220 YHIRIVAENEIGSSEPSDTVTILTA 244
I+ + S + + I A
Sbjct: 269 PSGWIIGLDFGVYSILTSSGGITEA 293
Score = 39.8 bits (92), Expect = 0.002
Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 5/121 (4%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI-LP 108
P N + GEP +C + + +N + ++ + + +
Sbjct: 28 NPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVK 87
Query: 109 NGVLSDLSIKRTERGDS-ALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
NG L I DS + C + ++ Q + K T+
Sbjct: 88 NGD---LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKY 144
Query: 168 G 168
G
Sbjct: 145 G 145
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 42.3 bits (100), Expect = 2e-05
Identities = 12/56 (21%), Positives = 20/56 (35%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
+ + ++ +Q G VLQC A G W N L ++ Y +
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPY 56
Score = 28.5 bits (64), Expect = 1.6
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 24/70 (34%)
Query: 199 EDIKLPCLTVGVPAPEIIW------------KTYHIRIV-----------AENEIGSSEP 235
+ L C+ VG P P W K Y + V N+ S +
Sbjct: 19 STLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQD- 77
Query: 236 SDTVTILTAE 245
S V I+ E
Sbjct: 78 SKKVEIIIDE 87
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 44.7 bits (105), Expect = 2e-05
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 45 LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
+ + +++ N T + + L C + I W N++ L R
Sbjct: 104 FHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIGAN-IQWLFNSQSLQLTE------RM 156
Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIK 133
+ N S L I +R D+ + CEI
Sbjct: 157 TLSQNN--SILRIDPIKREDAGEYQCEIS 183
Score = 37.3 bits (86), Expect = 0.006
Identities = 25/199 (12%), Positives = 45/199 (22%), Gaps = 48/199 (24%)
Query: 66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI-------------REEILPNGVL 112
+L W N K R+ RE I NG
Sbjct: 14 DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG-- 71
Query: 113 SDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSK 172
L + D ++T ++ T+ +
Sbjct: 72 -SLLFQMITMKDMGVYTLDM------------------------------TDENYRRTQA 100
Query: 173 NVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGS 232
V V + T + + L CL+ I W + +
Sbjct: 101 TVRFHVHQPVTQPFLQVTNT-TVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTL 158
Query: 233 SEPSDTVTILTAEEAPSGP 251
S+ + + I + +G
Sbjct: 159 SQNNSILRIDPIKREDAGE 177
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 45.9 bits (109), Expect = 2e-05
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 22/120 (18%)
Query: 12 PRILLGRVLLPIGESSFHFDPELLNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVL 71
P + G+ P++L P++ + + G
Sbjct: 360 PEFVQGKEFKDF--------PDVLLPNYFTCRRARIRDRKA------QQVFVDEGHTVQF 405
Query: 72 QCEAKGEKPIGILWNM-NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC 130
C A G+ P ILW + KS+ R T + P+G L ++ + D+ + C
Sbjct: 406 VCRADGDPPPAILWLSPRKHLVSAKSNGRLT----VFPDGT---LEVRYAQVQDNGTYLC 458
Score = 32.0 bits (73), Expect = 0.51
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Query: 183 PARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIG--SSEPSDTVT 240
++ C G P P I+W + +V+ G + P T+
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLE 444
Query: 241 ILTAEEAPSG 250
+ A+ +G
Sbjct: 445 VRYAQVQDNG 454
Score = 29.3 bits (66), Expect = 3.7
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 505 PARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT 541
++ C G P P I+W +
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLS 421
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 44.4 bits (104), Expect = 3e-05
Identities = 22/150 (14%), Positives = 45/150 (30%), Gaps = 13/150 (8%)
Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
+ ++ G +L P+ PP + V T ++SW D
Sbjct: 69 FMADDIFSVQITDQSGQYSQECGSFLLAESIKPA-PPFDVTV--TFSGQYQISWRSDYED 125
Query: 276 HWNGVIQG---YYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQAL 332
+++G Y + Y+ D + + + L + + Y + V+A
Sbjct: 126 PAFYMLKGKLQYELQYRNRG-DPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAG 184
Query: 333 NKLGPGPM------SEEVKQYTAEGTPEQP 356
G S+ V T ++
Sbjct: 185 PMPGSSYQGTWSEWSDPVIFQTQSEELKEH 214
Score = 28.6 bits (63), Expect = 3.9
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 218 KTYHIRIVAENEIGS------SEPSDTVTILTAEEAPSGPPTH 254
+Y +++ A GS SE SD V T E H
Sbjct: 175 SSYELQVRAGPMPGSSYQGTWSEWSDPVIFQTQSEELKEHHHH 217
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 44.3 bits (104), Expect = 3e-05
Identities = 28/195 (14%), Positives = 52/195 (26%), Gaps = 39/195 (20%)
Query: 60 NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRL----DPKSDNRYTIREEILPNGVLSDL 115
T G L+C+ + + + + R T+ EE LP G
Sbjct: 11 VYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKAL-F 69
Query: 116 SIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVT 175
I + DS + C + G K +T
Sbjct: 70 HIPSVQVRDSGQYRCLVIC-------------------------------GAAWDYKYLT 98
Query: 176 LSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEP 235
+ + + T +++L C G P E+ W+ + +
Sbjct: 99 V---KVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGL 155
Query: 236 SDTVTILTAEEAPSG 250
++L + PS
Sbjct: 156 YQVTSVLRLKPQPSR 170
Score = 27.7 bits (61), Expect = 8.4
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 8/89 (8%)
Query: 45 LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
L + I R L C+A+G + W + + ++ +
Sbjct: 97 LTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSW----QNVSVPANTSHIRT- 151
Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIK 133
P G+ S+ R + S F+C
Sbjct: 152 ---PEGLYQVTSVLRLKPQPSRNFSCMFW 177
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor);
helical bundle, fibronectin type III domain,
beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A
{Homo sapiens} PDB: 3og4_B*
Length = 226
Score = 44.3 bits (104), Expect = 3e-05
Identities = 13/154 (8%), Positives = 39/154 (25%), Gaps = 7/154 (4%)
Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
++ + R+ + S ++ + E PP + + T+ L + +
Sbjct: 74 LYNKFKGRVRTVSPSSKSPWVESEYLDYLFEVEPAPPV-LVLTQTE-EILSANATYQLPP 131
Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKL 335
+ Y V + + LF + + + + +
Sbjct: 132 CMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQPV-----QITLQPAASEHHCLSARTIYTF 186
Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQT 369
S+ K + + + +
Sbjct: 187 SVPKYSKFSKPTCFLLEVPEANASGSSGGSSGTS 220
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 42.7 bits (100), Expect = 3e-05
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG---ILWNMNNKR-LDPKSDNRYTIR 103
S+ F K + T + GE + K E + I W L K+ ++
Sbjct: 4 GSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLK 63
Query: 104 E--EILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135
E E ++ I + + + + CE+ +
Sbjct: 64 ETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYK 97
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 44.9 bits (105), Expect = 5e-05
Identities = 40/249 (16%), Positives = 71/249 (28%), Gaps = 23/249 (9%)
Query: 45 LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKP---IGILWNMNNKRLDPKSDNRYT 101
L + P E+ G+ L+C+ +G P + ++ K L
Sbjct: 80 LTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK-------- 131
Query: 102 IREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS-SQQMTYEASGLKKKQNYIFYVT 160
RE + ++ A F+C + ++ S + Q ++ T
Sbjct: 132 -REPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPAT 190
Query: 161 ASTNIGEGQPSKNVTLSPSNRV----PARIASF-----NDNFTATYTEDIKLPCLTVGVP 211
+ + + + P A + T T V
Sbjct: 191 PPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVS 250
Query: 212 APEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSP 271
T + S E TVTI + AP+ T +V + T+K P
Sbjct: 251 VTAEDEGTQRLTCAVILGNQSQETLQTVTIY-SFPAPNVILTKPEVSEGTEVTVKCEAHP 309
Query: 272 PERDHWNGV 280
+ NGV
Sbjct: 310 RAKVTLNGV 318
Score = 41.4 bits (96), Expect = 6e-04
Identities = 30/216 (13%), Positives = 48/216 (22%), Gaps = 72/216 (33%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
+ P + L G ++CEA + +
Sbjct: 282 SFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR--------------- 326
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
+ L +K T + F+C A+ +
Sbjct: 327 ---AQLLLKATPEDNGRSFSCS-----------------------------ATLEVAGQL 354
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTE--DIKLPCLTVGVPAPEIIWK--------- 218
KN T R+ + T+ E C G P PE+
Sbjct: 355 IHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI 414
Query: 219 ------------TYHIRIVAENEIGSSEPSDTVTIL 242
TY A + G TV +L
Sbjct: 415 GESVTVTRDLEGTY--LCRARSTQGEVTREVTVNVL 448
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 43.6 bits (102), Expect = 5e-05
Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 20/138 (14%)
Query: 218 KTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHW 277
Y R+ A + S+ + T T + +E + + +E + + P
Sbjct: 73 NGYRARVRAVDGSRHSQWTVTNTRFSVDEVTLTVGS-VNLEIHN-GFILGKIQLPRPKMA 130
Query: 278 N---------GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVV 328
+ Y + ++ F + ++ K +L + ++ V
Sbjct: 131 PAQDTYESIFSHFREYEIAIRKVPGQFTF-------THKKVKHEQFSLLTSGEVGEFCVQ 183
Query: 329 VQAL--NKLGPGPMSEEV 344
V+ ++ G S+E
Sbjct: 184 VKPSVASRSNKGMWSKEE 201
Score = 29.7 bits (66), Expect = 1.8
Identities = 19/170 (11%), Positives = 47/170 (27%), Gaps = 19/170 (11%)
Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
P + EA + + + W+P + + Y V + + ++ +
Sbjct: 7 SPPSVWFEAEFFHHI-LHWTPIPQQSESTC---YEVALLRYGIES---WNSISQCSQT-L 58
Query: 311 EHHLT--LSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQ 368
+ LT L Y V+A++ + +++ + N
Sbjct: 59 SYDLTAVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSVDEVTLTVGSVNLEIHNGFI 118
Query: 369 TIRVSWVSPPLITAN-------GVIKGYKVVY--GPSDTWYGDPKTDICT 409
++ P + A + Y++ P + K
Sbjct: 119 LGKIQLPRPKMAPAQDTYESIFSHFREYEIAIRKVPGQFTFTHKKVKHEQ 168
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 43.4 bits (102), Expect = 6e-05
Identities = 21/169 (12%), Positives = 46/169 (27%), Gaps = 21/169 (12%)
Query: 52 PEFEIKLRNQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
F +A K + + N K + + I G
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN---TG 59
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
++ + +++ + D +T +++ K ++ + KK I + P
Sbjct: 60 IIE-MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGP 118
Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAP-EIIWK 218
LS + T ++ L C + I+W
Sbjct: 119 HFVEYLS---------------WEVTGECNVLLKCKVANIKKETHIVWY 152
Score = 39.5 bits (92), Expect = 0.001
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRYTIREEILP 108
P F L + + +L+C+ K I+W + + + D ++ ++ I
Sbjct: 116 QGPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISV--DEKHDFKDGI-- 170
Query: 109 NGVLSDLSIKRTERGDSALFTCEIK 133
L I + D+ ++ +K
Sbjct: 171 ----CTLLITEFSKKDAGIYEVILK 191
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 43.6 bits (102), Expect = 9e-05
Identities = 29/213 (13%), Positives = 53/213 (24%), Gaps = 48/213 (22%)
Query: 47 LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-------------------IGILWNM 87
+ P + + G VL C P + I
Sbjct: 10 MGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPS 69
Query: 88 NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEAS 147
+ R +G + + R E D ++ CE + +++ +
Sbjct: 70 MGVSVLAPYRERVEFLRPSFTDG---TIRLSRLELEDEGVYICEFATFPTGNRESQLNLT 126
Query: 148 GLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLT 207
+ K N+I A +GQ K + +
Sbjct: 127 VMAKPTNWIEGTQAVLRAKKGQDDKVLVAT--------------------------CTSA 160
Query: 208 VGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVT 240
G P + W+T EI + + TV
Sbjct: 161 NGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVI 193
Score = 35.1 bits (80), Expect = 0.043
Identities = 13/83 (15%), Positives = 19/83 (22%), Gaps = 13/83 (15%)
Query: 51 PPEFEIK-LRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILP 108
PE I+ + L C+A W N L +
Sbjct: 231 EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSL---------PKGVEAQ 281
Query: 109 NGVLSDLSIKRTERGDSALFTCE 131
N L + + CE
Sbjct: 282 NRTL--FFKGPINYSLAGTYICE 302
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 40.8 bits (95), Expect = 1e-04
Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 6/91 (6%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG---ILW-NMNNKRLDPKSDNRYTIRE-- 104
F ++ ++ G G + + W L K + +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135
+ L +L I + + + CE+ ++
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTK 94
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 42.7 bits (100), Expect = 1e-04
Identities = 27/191 (14%), Positives = 44/191 (23%), Gaps = 49/191 (25%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
+ P + L G ++CEA + N P
Sbjct: 97 SFPAPNVILTKPEVSEGTEVTVKCEAHP--RAKVTLN----------------GVPAQPL 138
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
G + L +K T + F+C A+ +
Sbjct: 139 GPRAQLLLKATPEDNGRSFSCS-----------------------------ATLEVAGQL 169
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTE--DIKLPCLTVGVPAPEIIWKTYHIRIVAE 227
KN T R+ + T+ E C G P PE+ +
Sbjct: 170 IHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI 229
Query: 228 NEIGSSEPSDT 238
E +
Sbjct: 230 GESVTVTRDLE 240
Score = 30.0 bits (67), Expect = 1.5
Identities = 10/64 (15%), Positives = 16/64 (25%), Gaps = 7/64 (10%)
Query: 42 FPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYT 101
+ P L P N T C+A G + + P T
Sbjct: 182 YGPRLDERDCPG------NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP-IGESVT 234
Query: 102 IREE 105
+ +
Sbjct: 235 VTRD 238
Score = 27.7 bits (61), Expect = 9.8
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 504 VPARIASFNDNFTATYTE--DIKLPCLTVGVPAPEIIW 539
R+ + T+ E C G P PE+
Sbjct: 182 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKC 219
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 42.6 bits (100), Expect = 2e-04
Identities = 33/208 (15%), Positives = 59/208 (28%), Gaps = 47/208 (22%)
Query: 44 PLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRYTI 102
P+ L +++ ++ GEP L+C A +K +L+ N K N
Sbjct: 75 PIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN---- 130
Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
S+L+I +T + + C +
Sbjct: 131 ----------SNLTILKTNISHNGTYHC-----------------------------SGM 151
Query: 163 TNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHI 222
+VT+ P AS + L C T + + +
Sbjct: 152 GKHRYTSAGISVTVKELFPAPVLNASVTS--PLLEGNLVTLSCETKLLLQRPGLQLYFSF 209
Query: 223 RIVAENEIGSSEPSDTVTILTAEEAPSG 250
+ ++ + S ILTA SG
Sbjct: 210 YMGSKT-LRGRNTSSEYQILTARREDSG 236
Score = 34.9 bits (80), Expect = 0.046
Identities = 11/88 (12%), Positives = 20/88 (22%), Gaps = 17/88 (19%)
Query: 52 PEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
++ + + E L CE W +N + +
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS------------ 49
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKIS 138
I DS + C+ S
Sbjct: 50 ----YRITSASVNDSGEYRCQRGLSGRS 73
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 42.1 bits (98), Expect = 2e-04
Identities = 22/159 (13%), Positives = 45/159 (28%), Gaps = 11/159 (6%)
Query: 205 CLTVGVPAPEIIWKTYHIRIVAENEI---GSSEPSDTVTILTAEEAPSGPPTHIKVE-AT 260
CL +T ++ ++ I + I P + V
Sbjct: 66 CLNFRKLQEIYFIETKKFLLIGKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYRE 125
Query: 261 DQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLK 320
N V+++ + + V Y++ + + + + L L+
Sbjct: 126 GANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNL-----SSTKLTLLQRKLQ 180
Query: 321 TYTQYSVVVQA-LNKLGPGPMSEEVKQYTAEGTPEQPPQ 358
Y + V++ + G SE Y TPE
Sbjct: 181 PAAMYEIKVRSIPDHYFKGFWSEWSPSYYFR-TPEINNS 218
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 40.1 bits (93), Expect = 3e-04
Identities = 14/111 (12%), Positives = 27/111 (24%), Gaps = 28/111 (25%)
Query: 51 PPEFEIKL-----RNQTSRRGEPSVLQCEAKGEKPIGILWNMNNK--------------- 90
PP+ + G L G+ ++W
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 91 --------RLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK 133
D K R + S +++ E+ D ++T +K
Sbjct: 73 DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVK 123
Score = 30.1 bits (67), Expect = 0.96
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 4/82 (4%)
Query: 187 ASFNDNFTATYTEDIKLPCLTVGVPAPEIIW----KTYHIRIVAENEIGSSEPSDTVTIL 242
D ++L G PAP +IW + + D+ +
Sbjct: 22 GRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWV 81
Query: 243 TAEEAPSGPPTHIKVEATDQNT 264
++ ++VE T +
Sbjct: 82 FDKKLLCETEGRVRVETTKDRS 103
Score = 28.2 bits (62), Expect = 4.0
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 509 ASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
D ++L G PAP +IW+
Sbjct: 22 GRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQ 53
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 39.0 bits (91), Expect = 3e-04
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 44 PLLLSSAPPEFEI-KLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRLDPKSDNRYT 101
PL S P + + R+Q+ R G C AK + P ++W + N
Sbjct: 2 PLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWT--------RLHNGKL 53
Query: 102 IREEILPNGVLSDLSIKRTERGDSALFTC 130
+ NG+ L+I+ + D+ + C
Sbjct: 54 PSRAMDFNGI---LTIRNVQPSDAGTYVC 79
Score = 26.3 bits (58), Expect = 8.6
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 175 TLSPSNRVPARIASFNDNFTATYTEDIKLPCL-TVGVPAPEIIWKTYHIRIVAENEIGSS 233
L+ ++ + + D+ C PA ++W H + +
Sbjct: 2 PLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR---AM 58
Query: 234 EPSDTVTILTAEEAPSG 250
+ + +TI + + +G
Sbjct: 59 DFNGILTIRNVQPSDAG 75
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 41.4 bits (96), Expect = 4e-04
Identities = 10/102 (9%), Positives = 22/102 (21%), Gaps = 15/102 (14%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
+ + G + C + W + Y
Sbjct: 133 TPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKN 192
Query: 108 PNGVLS---------------DLSIKRTERGDSALFTCEIKS 134
G+ +L I+ + D+ CE+ +
Sbjct: 193 QFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELAT 234
Score = 37.6 bits (86), Expect = 0.006
Identities = 21/193 (10%), Positives = 37/193 (19%), Gaps = 52/193 (26%)
Query: 59 RNQTSRRGEPSVLQCE---AKGEKPIGILWNMNNKRLD---------------------- 93
G L C A +P I W
Sbjct: 10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69
Query: 94 --PKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKK 151
+S + R + + L + D + C++
Sbjct: 70 SYKESFGDFLGRASVANLAAPT-LRLTHVHPQDGGRYWCQVAQW---------------- 112
Query: 152 KQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVP 211
+ T G S + ++ S + DI + C
Sbjct: 113 --------SIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCA 164
Query: 212 APEIIWKTYHIRI 224
+ W T
Sbjct: 165 NANVTWYTGPTFF 177
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 38.4 bits (89), Expect = 6e-04
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 251 PPTHIKVEATDQNT--LKVSWSPPER-DHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
PP ++ N L+V+W P +++ Y+ D+ ++ V+
Sbjct: 10 PPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQ---WQHVEL--- 63
Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE 342
T++ +Y + V A + G S+
Sbjct: 64 -SNGTAHTITDAYAGKEYIIQVAAKDN-EIGTWSD 96
>1fyh_B Interferon-gamma receptor alpha chain; cytokine-receptor complex,
fibronectin type-III, immune system; 2.04A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1fg9_C 1jrh_I
Length = 229
Score = 40.1 bits (93), Expect = 8e-04
Identities = 18/138 (13%), Positives = 40/138 (28%), Gaps = 12/138 (8%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT--------HIKVEATDQNTLKVSWS 270
+ +R+ A S + + + GPP I ++ +
Sbjct: 80 SLWVRVKARVGQKESAYAKSEEFAVCRDGKIGPPKLDIRKEEKQIMIDIFHPSVFVNGDE 139
Query: 271 PP--ERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVV 328
I+ Y V + ++ + T + + L + +QY V
Sbjct: 140 QEVDYDPETTCYIRVYNVYVRMNGSEIQYKILTQKEDDCDEIQCQLAIPVSSLNSQYCVS 199
Query: 329 VQALNKLGP--GPMSEEV 344
+ + + S+EV
Sbjct: 200 AEGVLHVWGVTTEKSKEV 217
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 37.7 bits (87), Expect = 0.002
Identities = 11/98 (11%), Positives = 29/98 (29%), Gaps = 9/98 (9%)
Query: 52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRL------DPKSDNRYTIREE 105
T G+ L+C K + W + +++Y +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMT 143
+++ D ++ C S +S++++
Sbjct: 62 SANQL---SITVPNVTLQDEGVYKCLHYSDSVSTKEVK 96
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 38.2 bits (88), Expect = 0.003
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 45 LLLSSAPPEFEIKL---RNQTSRRGEPSVLQCEAKGE--KPIGILWNMNNKRLDPKSDNR 99
+++ +++ L GE VL C A+ E I W + + K
Sbjct: 96 IVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVN 155
Query: 100 YTIREEILPNG--VLSDLSIKRTERGDSALFTCEIKS 134
++ + LS L+I R D L+TC S
Sbjct: 156 RDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS 192
Score = 30.9 bits (69), Expect = 0.72
Identities = 23/157 (14%), Positives = 41/157 (26%), Gaps = 36/157 (22%)
Query: 62 TSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTE 121
T + + V+ C L ++ NR + + +I
Sbjct: 20 TENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKG-------FTIPSYM 72
Query: 122 RGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNR 181
+ + CE K S Q + Y + G +V LSPS+
Sbjct: 73 ISYAGMVFCEAKINDESYQSIMY------------------IVVVVGYRIYDVVLSPSHG 114
Query: 182 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
+ + E + L C I +
Sbjct: 115 I-----------ELSVGEKLVLNCTARTELNVGIDFN 140
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 38.7 bits (89), Expect = 0.003
Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 17/105 (16%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQC---EAKGEKPIGILWNMNNKRLDPKS-------- 96
S P + GE ++ C + + + W + + D
Sbjct: 2 SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61
Query: 97 ----DNRYTIREEILPNGVLSD--LSIKRTERGDSALFTCEIKSQ 135
R+ R ++ + +D L ++ ++ D ++TCEI+ +
Sbjct: 62 LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLK 106
Score = 30.2 bits (67), Expect = 1.7
Identities = 15/107 (14%), Positives = 41/107 (38%), Gaps = 21/107 (19%)
Query: 59 RNQTSRRGEPSVLQCEAKGEKPIGIL-------------------WNMNNKRLDPKSDNR 99
R+ R G+ + ++C + + + ++ N + +S R
Sbjct: 126 RDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGR 185
Query: 100 YTIREEILPNGVLSD--LSIKRTERGDSALFTCEIKSQKISSQQMTY 144
+ R ++ + +D + ++ + D ++TC I K+ S++
Sbjct: 186 FRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIV 232
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 39.0 bits (91), Expect = 0.003
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 6/99 (6%)
Query: 32 PELLNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKR 91
P L + P + G + L+C A + W N
Sbjct: 322 PNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTS-VSWITPNGT 380
Query: 92 LDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC 130
+ + Y +R +L +G L+ D+ ++TC
Sbjct: 381 VM--THGAYKVRIAVLSDGT---LNFTNVTVQDTGMYTC 414
Score = 35.5 bits (82), Expect = 0.038
Identities = 15/116 (12%), Positives = 30/116 (25%), Gaps = 8/116 (6%)
Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAE 227
G+ + + I + T +L C + W T + ++
Sbjct: 326 GRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKC-RASTSLTSVSWITPNGTVMTH 384
Query: 228 NEIG---SSEPSDTVTILTAEEAPSGPPTHIKV----EATDQNTLKVSWSPPERDH 276
+ T+ +G T + T TL V+ + H
Sbjct: 385 GAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHHHH 440
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 36.4 bits (84), Expect = 0.003
Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRL------DPKSDNRYTIR 103
+N T G ++L C + W+ ++ DNR +
Sbjct: 5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL- 63
Query: 104 EEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMT 143
+ + +S+ D +TC + + + + +
Sbjct: 64 --VRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAY 101
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 37.8 bits (87), Expect = 0.003
Identities = 9/85 (10%), Positives = 22/85 (25%), Gaps = 5/85 (5%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG---ILWNMNNKRLDPKSDNRYTIREEI 106
+ P+ + G+P ++C P I + + KS +
Sbjct: 90 SFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLM--KSQEFLEDADRK 147
Query: 107 LPNGVLSDLSIKRTERGDSALFTCE 131
+++ + C
Sbjct: 148 SLETKSLEVTFTPVIEDIGKVLVCR 172
Score = 31.7 bits (71), Expect = 0.43
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 11/46 (23%)
Query: 174 VTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT 219
+ +P +R A + + L C T G +P W+T
Sbjct: 3 IETTPESRY-----------LAQIGDSVSLTCSTTGCESPFFSWRT 37
Score = 31.3 bits (70), Expect = 0.58
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 12/82 (14%)
Query: 54 FEIKLR---NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
F+I+ ++ G+ L C G + W ++ + ++ G
Sbjct: 1 FKIETTPESRYLAQIGDSVSLTCSTTGCESPFFSW---------RTQIDSPLNGKVTNEG 51
Query: 111 VLSDLSIKRTERGDSALFTCEI 132
S L++ G+ + C
Sbjct: 52 TTSTLTMNPVSFGNEHSYLCTA 73
Score = 30.1 bits (67), Expect = 1.4
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 513 DNFTATYTEDIKLPCLTVGVPAPEIIWKT 541
+ A + + L C T G +P W+T
Sbjct: 9 SRYLAQIGDSVSLTCSTTGCESPFFSWRT 37
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 37.6 bits (87), Expect = 0.004
Identities = 14/98 (14%), Positives = 33/98 (33%), Gaps = 15/98 (15%)
Query: 44 PLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG-ILWNMNNKRLDPKSDNRYTI 102
P+ L ++ + G+P L+C + +++ + + L +N
Sbjct: 78 PVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYEN---- 133
Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
++SI DS + C K ++ +
Sbjct: 134 ----------HNISITNATVEDSGTYYCTGKVWQLDYE 161
Score = 29.1 bits (65), Expect = 2.6
Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 26/127 (20%)
Query: 52 PEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
P+ + +GE L C + W N + + +
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS------------ 52
Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
L+I + DS + C+ + S E L+ +++ ++ + EGQP
Sbjct: 53 ----LNIVNAKFEDSGEYKCQHQQVNES------EPVYLEVFSDWLLLQASAEVVMEGQP 102
Query: 171 SKNVTLS 177
+ L
Sbjct: 103 ---LFLR 106
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 37.7 bits (87), Expect = 0.004
Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 7/90 (7%)
Query: 45 LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG---ILWNMNNKRLDPKSDNRYT 101
+ P E+ GE L C G P + + L +S
Sbjct: 83 IRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEP 142
Query: 102 IREEILPNGVLSDLSIKRTERGDSALFTCE 131
R G + ++ A F+C
Sbjct: 143 PR----ARGAVLTATVLARREDHGANFSCR 168
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 38.8 bits (89), Expect = 0.004
Identities = 16/177 (9%), Positives = 37/177 (20%), Gaps = 33/177 (18%)
Query: 42 FPPLLLSSAPPEFEIKLRNQ-TSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRY 100
P L + + C + ++ N KR P + R
Sbjct: 221 KPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRA-PAFEGRI 279
Query: 101 TIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVT 160
+ + + I + D+ + C S + +A L + +
Sbjct: 280 LLNPQ--DKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRS 337
Query: 161 ASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
+ + + C + I +
Sbjct: 338 PT-----------------------------VVKGVAGSSVAVLCPYNRKESKSIKY 365
Score = 35.0 bits (79), Expect = 0.074
Identities = 20/196 (10%), Positives = 48/196 (24%), Gaps = 28/196 (14%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSV-LQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
+ + + + G P+ ++ + + ++P R + +
Sbjct: 123 TVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDS--SGYVNPNYTGRIRLDIQGT 180
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
+ S + I + D+ + C+ S KK + + +
Sbjct: 181 GQLLFS-VVINQLRLSDAGQYLCQAGDD-----------SNSNKKNADLQVLKPEPELVY 228
Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAE 227
+VT + K C +++ T R A
Sbjct: 229 EDLRGSVTFHCA-------------LGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAF 275
Query: 228 NEIGSSEPSDTVTILT 243
P D +
Sbjct: 276 EGRILLNPQDKDGSFS 291
Score = 30.4 bits (67), Expect = 1.9
Identities = 16/113 (14%), Positives = 29/113 (25%), Gaps = 5/113 (4%)
Query: 36 NPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQC----EAKGEKPIGILWNMNNKR 91
+ + N T+ GE + C + + WN +
Sbjct: 427 GDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQ 486
Query: 92 LDPKSDNRYTIREEIL-PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMT 143
P D + N L L++ R D + C +K +
Sbjct: 487 ALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAA 539
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 36.9 bits (85), Expect = 0.007
Identities = 21/151 (13%), Positives = 36/151 (23%), Gaps = 43/151 (28%)
Query: 71 LQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI----REEILPNGVLSDLSIKRTERGDSA 126
+ + + W + + EIL NG DL IK R DS
Sbjct: 18 IPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG---DLKIKNLTRDDSG 74
Query: 127 LFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARI 186
+ + S G +K + L V +
Sbjct: 75 TYNVTVYSTN-----------------------------GTRILNKALDLRILEMVSKPM 105
Query: 187 ASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
+ + + L C + E+
Sbjct: 106 IYWECS-------NATLTCEVLEGTDVELKL 129
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 35.9 bits (82), Expect = 0.007
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 59 RNQTSRRGEPSVLQCEAKGEK--PIGILWNMNNKRLDPKSDNRYTIREEILP--NGVLSD 114
GE VL C A+ E I W + + K ++ + LS
Sbjct: 16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75
Query: 115 LSIKRTERGDSALFTCEIKSQKISSQQMTY 144
L+I R D L+TC S ++ + T+
Sbjct: 76 LTIDGVTRSDQGLYTCAASSGLMTKKNSTF 105
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 35.6 bits (82), Expect = 0.009
Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 5/84 (5%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
PP + + ++ +G P + W N + L + +
Sbjct: 7 YPPRV---VSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPL--RESKIIHVEYYQEGE 61
Query: 110 GVLSDLSIKRTERGDSALFTCEIK 133
L + ++ +T K
Sbjct: 62 ISEGCLLFNKPTHYNNGNYTLIAK 85
Score = 28.6 bits (64), Expect = 2.1
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 182 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
P R+ S + + + + G P P + W
Sbjct: 7 YPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHW 39
Score = 28.6 bits (64), Expect = 2.1
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
P R+ S + + + + G P P + W
Sbjct: 7 YPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHW 39
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 34.8 bits (79), Expect = 0.010
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 249 SGPPTHIKVEATDQ-NTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
SGP E Q N+ + W+ P+ H I Y + ++ ++ + T+
Sbjct: 6 SGPVEVFITETPSQPNSHPIQWNAPQPSH----ISKYILRWRPKNSVGRWKEATIP---- 57
Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE 342
G + T+ LK Y + ++ + G ++
Sbjct: 58 -GHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTR 91
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 36.2 bits (83), Expect = 0.014
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAK-GEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
P + + G L+CE K G P+ W K + T+ L
Sbjct: 120 VKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQ--------KLSDSQTMPTPWLA 171
Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQ 135
+S+K S ++C ++++
Sbjct: 172 EMTSPVISVKNASSEYSGTYSCTVQNR 198
Score = 35.0 bits (80), Expect = 0.035
Identities = 28/212 (13%), Positives = 53/212 (25%), Gaps = 56/212 (26%)
Query: 62 TSRRGEPSVLQCEAKGE----KPIGILWNM---------------NNKRLDPKSDNRYTI 102
+GE + L C+ P+ I W + + ++
Sbjct: 11 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKG 70
Query: 103 REEILPNGVLSD---LSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYV 159
R N V S +++ + D + C++K
Sbjct: 71 RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKK------------------------- 105
Query: 160 TASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTV-GVPAPEIIWK 218
G +K L+ V + + D KL C G + W+
Sbjct: 106 ------APGVANKKFLLT--VLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQ 157
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSG 250
+ S +++ A SG
Sbjct: 158 KLSDSQTMPTPWLAEMTSPVISVKNASSEYSG 189
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 33.9 bits (78), Expect = 0.020
Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 8/85 (9%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
P L + TS + KG KP + W N L + + +
Sbjct: 4 APTI-TFLESPTS--DHHWCIPFTVKGNPKPA-LQWFYNGAIL--NESKYICTKIHVTNH 57
Query: 110 -GVLSDLSIKRTERGDSALFTCEIK 133
L + ++ +T K
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAK 82
Score = 28.6 bits (64), Expect = 1.5
Identities = 7/36 (19%), Positives = 9/36 (25%), Gaps = 3/36 (8%)
Query: 182 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
I T +P G P P + W
Sbjct: 3 FAPTITFLES---PTSDHHWCIPFTVKGNPKPALQW 35
Score = 28.6 bits (64), Expect = 1.5
Identities = 7/36 (19%), Positives = 9/36 (25%), Gaps = 3/36 (8%)
Query: 504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
I T +P G P P + W
Sbjct: 3 FAPTITFLES---PTSDHHWCIPFTVKGNPKPALQW 35
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 35.8 bits (82), Expect = 0.023
Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRYTIREEILP 108
A P+ +++ + +C + G +P I W+ + + T +
Sbjct: 115 AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQ------TSQVPGFL 168
Query: 109 NG---VLSDLSIKRTERGDSALFTCEIKSQ 135
+G V S + + + D TC+++ +
Sbjct: 169 SGTVTVTSLWILVPSSQVDGKQVTCKVEHE 198
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 35.6 bits (82), Expect = 0.035
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 11/96 (11%)
Query: 43 PPLLLSSAPPEF----EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDN 98
L + +F E K + G+ ++C+ K + + + +N+++ + N
Sbjct: 234 SKKLHNIFSLDFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSN 293
Query: 99 RYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKS 134
+ NG L K+ + D ++TC
Sbjct: 294 GSV----SVRNGD---LFFKKVQVEDGGVYTCYAMG 322
Score = 28.7 bits (64), Expect = 4.7
Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 11/90 (12%)
Query: 450 HCTWDPRGRNMYEELKSQGRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRVPARIA 509
C D + ++ + + ++ C S + L++ + C + A A
Sbjct: 202 EC--DCKLYQLFSHWQYRQLSSVMDFQEDLYCMHS-KKLHNIFSLDFFNCSEYKESAWEA 258
Query: 510 SFNDNFTATYTEDIKLPCLTVGVPAPEIIW 539
D T + C T ++
Sbjct: 259 HLGDTLT--------IRCDTKQQGMTKVWV 280
Score = 28.7 bits (64), Expect = 4.8
Identities = 7/61 (11%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 191 DNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGS-SEPSDTVTILTAEEAPS 249
+ A + + + C T ++ + +++++ GS S + + +
Sbjct: 254 SAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDG 313
Query: 250 G 250
G
Sbjct: 314 G 314
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 34.4 bits (78), Expect = 0.065
Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 12/84 (14%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGIL---WNMNNKRLDPKSDNRYTIREEIL 107
P E+ G+ L+C+ +G P L K L RE +
Sbjct: 86 PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK---------REPAV 136
Query: 108 PNGVLSDLSIKRTERGDSALFTCE 131
++ A F+C
Sbjct: 137 GEPAEVTTTVLVRRDHHGANFSCR 160
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 32.6 bits (74), Expect = 0.072
Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 15/110 (13%)
Query: 48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDN--------R 99
SS L + GE +V + W +N + L R
Sbjct: 5 SSGTARLVAGLEDVQVYDGEDAVFSLDLSTIIQ--GTWFLNGEELKSNEPEGQVEPGALR 62
Query: 100 YTIREEILPNGVLSDLSIKRTERGDS-ALFTCEIKSQKISSQQMTYEASG 148
Y I ++ G+ L + + DS AL + S+ E+SG
Sbjct: 63 YRIEQK----GLQHRLILHAVKHQDSGALVGFSCPGVQDSAALTIQESSG 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.075
Identities = 33/214 (15%), Positives = 52/214 (24%), Gaps = 96/214 (44%)
Query: 125 SALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS------------- 171
+ LF ++ + + + S L+ S EG PS
Sbjct: 301 TVLFFIGVRCYE-AYPNTSLPPSILED----------SLENNEGVPSPMLSISNLTQEQV 349
Query: 172 ------KNVTLSPSNRVPARIASFN--DNFTAT-----------YTEDIKLPC------- 205
N L +V I+ N N + K P
Sbjct: 350 QDYVNKTNSHLPAGKQV--EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 206 -------------LTVGVP--------APEII----------WKTYHIRI-VAENEIGS- 232
L V P A ++I + I+I V + GS
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 233 -SEPSDTVT------ILTA----EEAPSGPPTHI 255
S +++ I+ E THI
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 34.7 bits (80), Expect = 0.083
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 7/99 (7%)
Query: 32 PELLNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKR 91
+ + P R+ G + L+C + W + N
Sbjct: 333 MHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGT 390
Query: 92 LDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC 130
+ S R +L +G L+ D+ ++TC
Sbjct: 391 VL--SHASRHPRISVLNDGTLN---FSHVLLSDTGVYTC 424
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 33.3 bits (76), Expect = 0.11
Identities = 16/153 (10%), Positives = 35/153 (22%), Gaps = 45/153 (29%)
Query: 71 LQCEAKGEKPIGILWNMNNKRL------DPKSDNRYTIREEILPNGVLSDLSIKRTERGD 124
+ + I W + + K + ++ NG L IK + D
Sbjct: 21 IPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLK---IKHLKTDD 77
Query: 125 SALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPA 184
++ I ++ + + E ++ + N
Sbjct: 78 QDIYKVSIYDT----------KGKNVLEKIFDLKIQ------ERVSKPKISWTCIN---- 117
Query: 185 RIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
L C + PE+
Sbjct: 118 ----------------TTLTCEVMNGTDPELNL 134
Score = 27.9 bits (62), Expect = 6.3
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 20/86 (23%)
Query: 61 QTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRT 120
+ S + L CE + + K L + +
Sbjct: 110 KISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLS-----------------QRVITHKW 152
Query: 121 ERGDSALFTCEIK---SQKISSQQMT 143
SA F C S++ S + ++
Sbjct: 153 TTSLSAKFKCTAGNKVSKESSVEPVS 178
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 33.2 bits (75), Expect = 0.12
Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 7/91 (7%)
Query: 44 PLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGIL---WNMNNKRLDPKSDNRY 100
+ + P + + L+ G+ ++C +P+ L N+ L ++ +
Sbjct: 81 NVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKA 140
Query: 101 TIREEILPNGVLSDLSIKRTERGDSALFTCE 131
P + + F+C
Sbjct: 141 APA----PQEATATFNSTADREDGHRNFSCL 167
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 32.8 bits (74), Expect = 0.12
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 9/101 (8%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRL------DPKSDNRYTIRE 104
+ + ++T G VL+C+ K + + W+ ++ DNR +
Sbjct: 38 QDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVT 97
Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYE 145
LS +SI D +TC I + + + +
Sbjct: 98 S--TPHELS-ISISNVALADEGEYTCSIFTMPVRTAKSLVT 135
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 32.1 bits (72), Expect = 0.13
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 6/100 (6%)
Query: 43 PPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG---ILW-NMNNKRLDPKSDN 98
F K + + G+ +V+ + G++ I W L KS
Sbjct: 4 GSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGA 63
Query: 99 RYTIREEI--LPNGVLSDLSIKRTERGDSALFTCEIKSQK 136
R++ +E N +L I + GD + E+K++
Sbjct: 64 RFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKD 103
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 32.5 bits (74), Expect = 0.16
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 26/105 (24%)
Query: 42 FPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRY 100
F L+L + EF + GE +L+C + +KP + + + N K +
Sbjct: 85 FEWLVLQTPHLEF---------QEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLD-- 133
Query: 101 TIREEILPNGVLSDLSIKRTERGDSALFTCE--IKSQKISSQQMT 143
SI + S + C I SS+ +T
Sbjct: 134 ------------PTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVT 166
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 32.5 bits (74), Expect = 0.19
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 26/105 (24%)
Query: 42 FPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG-ILWNMNNKRLDPKSDNRY 100
LLL + F + +P L+C + + + + N K N
Sbjct: 88 IGWLLLQAPRWVF---------KEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHN-- 136
Query: 101 TIREEILPNGVLSDLSIKRTERGDSALFTCE--IKSQKISSQQMT 143
SD I + DS + C + S+ +SS+ +
Sbjct: 137 ------------SDFHIPKATLKDSGSYFCRGLVGSKNVSSETVN 169
Score = 30.6 bits (69), Expect = 0.82
Identities = 11/98 (11%), Positives = 26/98 (26%), Gaps = 24/98 (24%)
Query: 42 FPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRY 100
P ++ P + + + L+C+ + W N + ++ +
Sbjct: 5 LPKAVVFLEPQWYSVL-------EKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS-- 55
Query: 101 TIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS 138
I DS + C+ +S
Sbjct: 56 --------------YFIDAATVNDSGEYRCQTNLSTLS 79
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 32.3 bits (73), Expect = 0.23
Identities = 23/186 (12%), Positives = 43/186 (23%), Gaps = 55/186 (29%)
Query: 47 LSSAPPEFEIKLRNQTSRRGEPSVLQCEAK-GEKPIGILWNMNNKRLDP----------- 94
+S P GE L E GEK I W N L
Sbjct: 1 MSLTPLM-------VNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEI 53
Query: 95 -KSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQ 153
++ + R + L + + D+ + +I
Sbjct: 54 HVTNPKQGKRLNFTQSY---SLQLSNLKMEDTGSYRAQI--------------------- 89
Query: 154 NYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPC-LTVGVPA 212
+ + TL ++ + + T ++ L C +
Sbjct: 90 ----------STKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDN 139
Query: 213 PEIIWK 218
W+
Sbjct: 140 VSFRWE 145
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 32.3 bits (73), Expect = 0.25
Identities = 25/199 (12%), Positives = 56/199 (28%), Gaps = 53/199 (26%)
Query: 60 NQTSRRGEPSVLQCEAKGEK-----PIGILWNMNNKRL-------------DPKSDNRYT 101
G ++C+ EK + + W M +K + R
Sbjct: 10 LYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRAR 69
Query: 102 IREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTA 161
+ ++ L G + L I + D+ ++ C I +++T +
Sbjct: 70 LLKDQLSLGNAA-LQITDVKLQDAGVYRCMISYGGADYKRITVKV--------------- 113
Query: 162 STNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYH 221
P + T + +L C G P E+IW +
Sbjct: 114 -------------------NAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSD 154
Query: 222 IRIVAENEIGSSEPSDTVT 240
++++ ++ +
Sbjct: 155 HQVLSGKTTTTNSKREEKL 173
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 30.8 bits (70), Expect = 0.30
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 15/104 (14%)
Query: 241 ILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFE 300
+++A P+G V + NT ++W+ G Y V + T + P+
Sbjct: 1 MVSAPAFPTGLSA---VLDSSGNTANLTWNAA-----PGA-NSYNV-KRSTKSGGPY--T 48
Query: 301 TVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV 344
T+ + T + + T T+Y VV A++ S E
Sbjct: 49 TI---ATNITSTNYTDTGVATGTKYYYVVSAVSNGVETLNSAEA 89
Score = 29.3 bits (66), Expect = 0.95
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 143 TYEASGLKKKQNYIFYVTASTNIGEGQPSKNVT 175
Y +G+ Y + V+A +N E S
Sbjct: 58 NYTDTGVATGTKYYYVVSAVSNGVETLNSAEAI 90
Score = 28.5 bits (64), Expect = 2.0
Identities = 3/26 (11%), Positives = 8/26 (30%)
Query: 218 KTYHIRIVAENEIGSSEPSDTVTILT 243
Y+ + A + + S +
Sbjct: 68 TKYYYVVSAVSNGVETLNSAEAILQY 93
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 31.4 bits (71), Expect = 0.52
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 24/91 (26%)
Query: 42 FPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG-ILWNMNNKRLDPKSDNRY 100
LLL + F + +P L+C + + + + N K N
Sbjct: 88 IGWLLLQAPRWVF---------KEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHN-- 136
Query: 101 TIREEILPNGVLSDLSIKRTERGDSALFTCE 131
SD I + DS + C
Sbjct: 137 ------------SDFYIPKATLKDSGSYFCR 155
Score = 29.5 bits (66), Expect = 2.2
Identities = 11/98 (11%), Positives = 25/98 (25%), Gaps = 24/98 (24%)
Query: 42 FPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRY 100
P ++ P + L+C+ + W N + ++ +
Sbjct: 5 LPKAVVFLEPQW-------YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS-- 55
Query: 101 TIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS 138
I DS + C+ + +S
Sbjct: 56 --------------YFIDAATVDDSGEYRCQTQLSTLS 79
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 31.2 bits (70), Expect = 0.62
Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 14/114 (12%)
Query: 193 FTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEE-----A 247
Y+ ++K + RIV+ E+ ++ ++ A E A
Sbjct: 120 IQVNYSSEVKEN---SVDSDDKAKVPPLI-RIVSGLELSDTKQKGKKFLVIAYEPFENIA 175
Query: 248 PSGPPTHI-KVEATDQNTLKVSWSPPER--DHWNGVIQGYYV--GYKETSTDKP 296
PP I E D + + W+ + + YYV +K+ ++
Sbjct: 176 IELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFFFKQAEQEQA 229
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 29.9 bits (67), Expect = 0.85
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 73 CEAKGEKPIGILWNM----NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALF 128
C +G+ P N N R+ + +RY ++ I V L+I+ + DS L+
Sbjct: 31 CWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDV--SLTIENSVESDSGLY 88
Query: 129 TCEIK 133
C ++
Sbjct: 89 CCRVE 93
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 31.0 bits (69), Expect = 0.98
Identities = 19/256 (7%), Positives = 54/256 (21%), Gaps = 80/256 (31%)
Query: 51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG----ILWNMNNKRLDPKSDNRYTIREEI 106
I+ + G+ L G++P+ W +++ + +
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT---------- 51
Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
+ L++ ++ + + +
Sbjct: 52 ------ATLTVADATSENAGSYKVTV------------------------------QDTD 75
Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPC---LTVGVPAPEIIWKTYH-- 221
++ + +F + D++L + G + Y
Sbjct: 76 TMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWS 135
Query: 222 ------------------------IRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKV 257
+ E S S + I+ A
Sbjct: 136 KGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNV-DQDVVESK 194
Query: 258 EATDQNTLKVSWSPPE 273
N + +++ E
Sbjct: 195 TVALGNEISLNYVVSE 210
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 29.6 bits (66), Expect = 1.0
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 64 RRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERG 123
GE C ++W N + + ++RY ++ I G +S L+I+ T G
Sbjct: 34 GLGECRHSYCIRS------LIW-TNGYTVTHQRNSRYQLKGNIS-EGNVS-LTIENTVVG 84
Query: 124 DSALFTCEIK 133
D + C ++
Sbjct: 85 DGGPYCCVVE 94
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 30.3 bits (68), Expect = 1.1
Identities = 8/82 (9%), Positives = 22/82 (26%), Gaps = 11/82 (13%)
Query: 66 GEPSVLQCEAKGEKPIGILWNMNNKRL------DPKSDNRYTIR-EEILPNGVLSDLSIK 118
+LW ++ + ++ + + R +G L+I
Sbjct: 10 YGNVTFHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG---SLTIY 65
Query: 119 RTERGDSALFTCEIKSQKISSQ 140
D + E + + +
Sbjct: 66 NLTSSDEDEYEMESPNITDTMK 87
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 30.6 bits (68), Expect = 1.4
Identities = 22/253 (8%), Positives = 48/253 (18%), Gaps = 77/253 (30%)
Query: 66 GEPSVLQC-----------EAKGEKPIGILWNMNNKRLDPKSDNRYTIREE-ILPNGVLS 113
EP+ ++C + ++W + D + + + E I
Sbjct: 22 DEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK--D 79
Query: 114 DLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKN 173
L + T D+ +TC + +
Sbjct: 80 VLWFRPTLLNDTGNYTC-----------------------------MLRNTTYCSKVAFP 110
Query: 174 VTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTV-----GVPAPEIIWK---------- 218
+ + + + ++ C V P I W
Sbjct: 111 LEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFN 170
Query: 219 -------TYHIRIV-----------AENEIGSSEPSDTVTI-LTAEEAPSGPPTHIKVEA 259
I T T+ + +P +
Sbjct: 171 NVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSP 230
Query: 260 TDQNTLKVSWSPP 272
D +
Sbjct: 231 NDHVVYEKEPGEE 243
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 30.0 bits (67), Expect = 1.5
Identities = 28/187 (14%), Positives = 44/187 (23%), Gaps = 41/187 (21%)
Query: 62 TSRRGEPSVLQCEAKGE----KPIGILWNMNNKRL------DPKSDNRYTIREEILPNGV 111
T E + L C I W K + D Y R
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 112 LSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS 171
LS + I D + C + +K + A +
Sbjct: 65 LS-IVILALRPSDEGTYECVVLK---------------YEKDAFKREHLAEVTLSVKADF 108
Query: 172 KNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGV-PAPEIIWKTYHIRIVAENEI 230
++S + ++ C T G P P + W + A N
Sbjct: 109 PTPSISDF--------------EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTT 154
Query: 231 GSSEPSD 237
S +P
Sbjct: 155 VSQDPET 161
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 30.2 bits (67), Expect = 1.5
Identities = 23/198 (11%), Positives = 46/198 (23%), Gaps = 44/198 (22%)
Query: 60 NQTSRRGEPSVLQCEA---------------KGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
RG+ +L C + + + + R
Sbjct: 9 LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRS 68
Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTN 164
L + + GD + C +++ + + T V A
Sbjct: 69 PPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATAR-----------LNVFA--- 114
Query: 165 IGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTV-GVPAPEIIWKTYHIR 223
+P + + C + G PAP+I W R
Sbjct: 115 ----KPEATEVSPNKGTLS----------VMEDSAQEIATCNSRNGNPAPKITWYRNGQR 160
Query: 224 IVAENEIGSSEPSDTVTI 241
+ E+ + T+
Sbjct: 161 LEVPVEMNPEGYMTSRTV 178
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase,
hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia
furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A*
Length = 572
Score = 30.6 bits (69), Expect = 1.6
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 363 TTLTSQTIRVSWVS-PPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSP 418
I W + + KGY+++ D Y D +W SP
Sbjct: 415 YLNKDDYIIQVWTTGVDPQIKGLLEKGYRLIMSNYDALYFDCGYGAWVGAGNNWCSP 471
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 28.7 bits (64), Expect = 2.0
Identities = 14/105 (13%), Positives = 34/105 (32%), Gaps = 11/105 (10%)
Query: 49 SAPPEFEIKLRNQTSRRGEPSVLQCEAK-GEKPIGILWNMN--------NKRLDPKSDNR 99
S+ + L + T G L E + W + R +++
Sbjct: 2 SSGSSGQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESK 61
Query: 100 YTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTY 144
+ R + P L I + ++ D++ + + + + Q+
Sbjct: 62 FKGRVRLDPQS--GALYISKVQKEDNSTYIMRVLKKTGNEQEWKI 104
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 28.0 bits (63), Expect = 2.1
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 24/102 (23%)
Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYV---GYKETSTDKPFLFETVD 303
AP+ PT++ A +++ +SW+ N + GY V T+
Sbjct: 3 APT-APTNLASTAQTTSSITLSWTASTD---NVGVTGYDVYNGTALATTVTGT------- 51
Query: 304 FSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG-PGPMSEEV 344
T+S L T Y+ V+A + G S V
Sbjct: 52 ---------TATISGLAADTSYTFTVKAKDAAGNVSAASNAV 84
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 2.4
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 5/24 (20%)
Query: 330 QALNKLGPGPMSEEVKQYTAEGTP 353
QAL KL +K Y + P
Sbjct: 20 QALKKL-----QASLKLYADDSAP 38
Score = 28.8 bits (63), Expect = 3.0
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 306 KEEGKEHHLTLSSLKTYTQYSVVVQALN 333
K+ K+ L +SLK Y S A+
Sbjct: 19 KQALKK--LQ-ASLKLYADDSAPALAIK 43
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 29.8 bits (67), Expect = 2.5
Identities = 35/265 (13%), Positives = 60/265 (22%), Gaps = 68/265 (25%)
Query: 238 TVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG----VIQGYYVGYKETST 293
I+ ++A + V+ + + VSW+ WNG + G + S
Sbjct: 14 KFAIVEVDQAATAYNN--LVKVKNAADVSVSWNL-----WNGDTGTTAKVLLNGKEAWSG 66
Query: 294 DKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
T +F +G +Y + V N G T
Sbjct: 67 PSTGSSGTANFKVNKG-------------GRYQMQVALCNADG--------------CTA 99
Query: 354 EQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVV-YGPSDTWYG---DPK---TD 406
+ T S + G V Y YG
Sbjct: 100 SDATEIVVADTDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQ 159
Query: 407 ICTDI------------------RASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFR 448
T + L + + +KV D + + +
Sbjct: 160 NLTHLLYGFIPICGGNGINDSLKEIEGSFQALQRSCQGREDFKVSI--HDPFAALQKAQK 217
Query: 449 NHCTWDPRGRNMYE---ELKSQGRG 470
WD + + LK
Sbjct: 218 GVTAWDDPYKGNFGQLMALKQAHPD 242
>3if8_A Hzwilch, protein zwilch homolog; incomplete beta-barrel,
alternative splicing, cell cycle, CE division,
kinetochore, mitosis, polymorphism; 2.55A {Homo sapiens}
Length = 339
Score = 29.8 bits (66), Expect = 2.5
Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 10/137 (7%)
Query: 245 EEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDF 304
+ PP ++ +++D W E N I G + DK + +
Sbjct: 133 LPVTALPPLWVRCDSSDPE--GTCWLGAELITTNNSITGIVLYVVSCKADKNYSVNLENL 190
Query: 305 SKEEGKEHHLTLSSLKTYTQY----SVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDN 360
K HHL+ + K + QY S + ++ ++ + + PP +
Sbjct: 191 KNLHKKRHHLSTVTSKGFAQYELFKSSALDDTITASQTAIALDISWSPVDEILQIPPLSS 250
Query: 361 TCTTLTSQTIRVSWVSP 377
T T I+V P
Sbjct: 251 TATL----NIKVESGEP 263
>3it4_B Arginine biosynthesis bifunctional protein ARGJ beta chain;
ornithine acetyltransferase, structural genomics; 1.70A
{Mycobacterium tuberculosis} PDB: 3it6_B
Length = 205
Score = 29.0 bits (66), Expect = 3.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 17 GRVLLPIGESSFHFDPELLNPSFNGFP 43
GRVL +G + DP+ ++ SFNG
Sbjct: 125 GRVLAAVGMAPITLDPDRISVSFNGAA 151
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 28.0 bits (62), Expect = 3.2
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 88 NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK 133
+ + + + +RY ++ ++ V L IK D + C I+
Sbjct: 49 DERNVTYQKSSRYQLKGDLNKGDV--SLIIKNVTLDDHGTYCCRIQ 92
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 28.0 bits (62), Expect = 3.5
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 65 RGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD 124
+G +C A+ +L + R+ + +YT+ ++ V L+I T RGD
Sbjct: 34 KGSCPNSKCNAE------LLRT-DGTRIISRKSTKYTLLGKVQFGEV--SLTISNTNRGD 84
Query: 125 SALFTCEIK 133
S ++ C I+
Sbjct: 85 SGVYCCRIE 93
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 27.9 bits (62), Expect = 5.3
Identities = 8/88 (9%), Positives = 21/88 (23%), Gaps = 12/88 (13%)
Query: 66 GEPSVLQCEAK-GEKPIGILWNMNNKRL---------DPKSDNRYTIREEILPNGVLSDL 115
G L + W + ++ + R ++ L
Sbjct: 14 GSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTN--GAL 71
Query: 116 SIKRTERGDSALFTCEIKSQKISSQQMT 143
I + D + + + ++T
Sbjct: 72 RIYNVSKEDRGDYYMRMLHETEDQWKIT 99
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 28.5 bits (64), Expect = 7.5
Identities = 6/57 (10%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 316 LSSLKTYTQYSVVVQALNKLGPGPMSEEVKQY--TAEGTPEQPPQDNTCTTLTSQTI 370
L+ + ++ ++ L E + GT + C + +
Sbjct: 310 ARDLQNLMSWRFIMDLVSSL-SRTYKESRNAFRKALYGTTSETATWRRCANYVNGNM 365
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 26.9 bits (59), Expect = 8.2
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 76 KGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLS--IKRTERGDSALFTCEIK 133
+G + +++ + + R + + + D S I + D+ FTC++K
Sbjct: 42 EGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVK 101
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 27.6 bits (61), Expect = 8.4
Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 5/76 (6%)
Query: 302 VDFSKEEGKEHHLTLSSLKTYTQY---SVVVQALNKLGPGPMSEEVKQYTAEGTP--EQP 356
VDF E E L+ Y Q +V+V L + P + P Q
Sbjct: 13 VDFLIENDAEKDYLYDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQV 72
Query: 357 PQDNTCTTLTSQTIRV 372
D + + V
Sbjct: 73 EYDQLTPRRSRKLKEV 88
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.413
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,524,436
Number of extensions: 514679
Number of successful extensions: 2854
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2061
Number of HSP's successfully gapped: 1137
Length of query: 543
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 445
Effective length of database: 3,965,535
Effective search space: 1764663075
Effective search space used: 1764663075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.3 bits)