BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3720
(190 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P47024|YJ41B_YEAST Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY4B-J PE=2 SV=3
Length = 1803
Score = 31.2 bits (69), Expect = 4.9, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 121 DIVYNQ-------SMVGGMNTVDKRHINEELGYIAPPNRKLPPVPGSNYNTCDRIKRVLN 173
D+VYN+ ++ +N +DK++ NEEL I RK +P + D K VL
Sbjct: 1507 DLVYNKRLGTIDLTLKSFINRMDKKY-NEELKKI----RK-SSIPHMSTYKIDPKKDVLQ 1560
Query: 174 FSSEEFEMSVLKRRSI 189
S EEF VLK + +
Sbjct: 1561 MSEEEFRQGVLKLQQL 1576
>sp|P0C2J7|YH41B_YEAST Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY4B-H PE=2 SV=1
Length = 1802
Score = 31.2 bits (69), Expect = 4.9, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 121 DIVYNQ-------SMVGGMNTVDKRHINEELGYIAPPNRKLPPVPGSNYNTCDRIKRVLN 173
D+VYN+ ++ +N +DK++ NEEL I RK +P + D K VL
Sbjct: 1506 DLVYNKRLGTIDLTLKSFINRMDKKY-NEELKKI----RK-SSIPHMSTYKIDPKKDVLQ 1559
Query: 174 FSSEEFEMSVLKRRSI 189
S EEF VLK + +
Sbjct: 1560 MSEEEFRQGVLKLQQL 1575
>sp|Q62028|PLA2R_MOUSE Secretory phospholipase A2 receptor OS=Mus musculus GN=Pla2r1 PE=1
SV=1
Length = 1487
Score = 30.8 bits (68), Expect = 5.7, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 23 NAVVPIGATV-IVVFVGLLVVCFAVSRRKGDGQTRLRGTIMPPFKTSDFS 71
+++VP+ T+ +++ +G+ ++CF + ++K D RL G+ + T +FS
Sbjct: 1395 HSIVPVTVTLTLIIALGIFMLCFWIYKQKSDIFQRLTGSRGSYYPTLNFS 1444
>sp|Q5XIH2|SHSA5_RAT Protein shisa-5 OS=Rattus norvegicus GN=Shisa5 PE=2 SV=1
Length = 130
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 20 IDWNAVVPIGATVIVVFVGLLVVCFAVS 47
+ + A V IG TV VVF+ ++VCF S
Sbjct: 1 MGFGATVAIGLTVFVVFIATIIVCFTCS 28
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 81 IDWNAVVPIGATVIVVFVGLLVVCFAVS 108
+ + A V IG TV VVF+ ++VCF S
Sbjct: 1 MGFGATVAIGLTVFVVFIATIIVCFTCS 28
>sp|O69053|PTXC_PSEST Phosphite transport system permease protein PtxC OS=Pseudomonas
stutzeri GN=ptxC PE=3 SV=1
Length = 275
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 57 LRGTIMPPFKTSDFSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSR 109
L G MPP DFS Y W+ ID A+ G + VVF LVV F +R
Sbjct: 65 LAGEAMPP----DFSGYRSWIRPLIDTLAMSIAGTAIAVVFS--LVVAFVAAR 111
>sp|Q92154|SMP_COTJA Schwann cell myelin protein OS=Coturnix coturnix japonica GN=SMP
PE=1 SV=1
Length = 620
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 17 PGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRGTIMPPFKTSDFSPYLPW 76
PG + W V P+GA V V + VVC+ R+ G T + P P L
Sbjct: 506 PGGLVWAKVGPVGAVVAFAIV-IAVVCYLSQSRRKKGAGSPEVTPVQPMAGPGGDPDLDL 564
Query: 77 VPGWIDW 83
P + W
Sbjct: 565 RPQQVRW 571
>sp|Q9D7I0|SHSA5_MOUSE Protein shisa-5 OS=Mus musculus GN=Shisa5 PE=2 SV=1
Length = 235
Score = 30.0 bits (66), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 22 WNAVVPIGATVIVVFVGLLVVCFAVS 47
+ A V IG T+ VVF+ +++CF S
Sbjct: 106 FGATVAIGVTIFVVFIATIIICFTCS 131
Score = 30.0 bits (66), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 83 WNAVVPIGATVIVVFVGLLVVCFAVS 108
+ A V IG T+ VVF+ +++CF S
Sbjct: 106 FGATVAIGVTIFVVFIATIIICFTCS 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,867,318
Number of Sequences: 539616
Number of extensions: 2978039
Number of successful extensions: 6121
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6111
Number of HSP's gapped (non-prelim): 21
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)