Query psy3720
Match_columns 190
No_of_seqs 20 out of 22
Neff 2.0
Searched_HMMs 46136
Date Fri Aug 16 23:50:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05454 DAG1: Dystroglycan (D 88.7 0.13 2.8E-06 45.7 0.0 31 23-53 148-178 (290)
2 PF05454 DAG1: Dystroglycan (D 88.0 0.15 3.3E-06 45.3 0.0 69 84-165 148-229 (290)
3 PF01299 Lamp: Lysosome-associ 81.6 1.1 2.4E-05 38.4 2.3 30 84-113 270-300 (306)
4 PF12273 RCR: Chitin synthesis 76.6 0.28 6E-06 37.4 -2.5 15 46-60 23-37 (130)
5 PF04478 Mid2: Mid2 like cell 59.6 7.4 0.00016 32.6 2.3 27 24-50 54-80 (154)
6 PF15102 TMEM154: TMEM154 prot 56.0 15 0.00032 30.5 3.4 22 85-106 61-82 (146)
7 PF15102 TMEM154: TMEM154 prot 54.6 12 0.00026 31.1 2.7 26 24-49 61-86 (146)
8 PF04478 Mid2: Mid2 like cell 52.3 14 0.0003 31.0 2.7 28 84-111 53-80 (154)
9 PF12273 RCR: Chitin synthesis 49.8 4.8 0.00011 30.7 -0.3 7 104-110 21-27 (130)
10 PF06809 NPDC1: Neural prolife 43.3 66 0.0014 30.2 5.8 68 46-113 151-229 (341)
11 PF15012 DUF4519: Domain of un 43.0 15 0.00032 26.5 1.4 17 84-100 32-48 (56)
12 PHA03283 envelope glycoprotein 37.5 43 0.00093 33.0 3.9 39 71-111 390-428 (542)
13 PF13908 Shisa: Wnt and FGF in 34.3 98 0.0021 24.5 4.9 18 84-101 79-96 (179)
14 PF07213 DAP10: DAP10 membrane 33.7 40 0.00087 25.7 2.5 36 85-124 35-72 (79)
15 PF02480 Herpes_gE: Alphaherpe 32.6 15 0.00032 34.2 0.0 22 141-162 416-438 (439)
16 PF13908 Shisa: Wnt and FGF in 30.1 23 0.0005 28.0 0.7 20 21-40 77-96 (179)
17 KOG4818|consensus 26.6 44 0.00096 31.4 2.0 31 81-111 323-354 (362)
18 PF02480 Herpes_gE: Alphaherpe 25.0 24 0.00052 32.9 0.0 24 30-53 362-385 (439)
19 KOG1094|consensus 24.5 56 0.0012 33.5 2.4 24 87-110 394-417 (807)
20 PF09764 Nt_Gln_amidase: N-ter 24.3 33 0.00072 29.1 0.7 16 136-151 125-141 (184)
21 PRK13686 hypothetical protein; 24.2 18 0.00039 24.9 -0.7 35 77-112 7-41 (43)
22 PF15298 AJAP1_PANP_C: AJAP1/P 23.4 34 0.00073 30.0 0.6 26 79-104 94-119 (205)
23 PF07760 DUF1616: Protein of u 23.2 42 0.00092 28.8 1.1 25 25-49 86-110 (287)
24 PHA02902 putative IMV membrane 22.8 45 0.00097 25.1 1.0 18 89-106 7-24 (70)
25 PF06365 CD34_antigen: CD34/Po 22.3 91 0.002 26.9 2.9 33 94-126 112-145 (202)
26 PF07004 SHIPPO-rpt: Sperm-tai 21.0 45 0.00098 18.4 0.6 8 156-164 2-9 (37)
27 PF11406 Tachystatin_A: Antimi 20.9 33 0.00072 23.7 0.0 11 157-167 33-43 (44)
28 PF08693 SKG6: Transmembrane a 20.5 71 0.0015 21.5 1.5 12 84-95 16-27 (40)
No 1
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=88.70 E-value=0.13 Score=45.74 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=0.0
Q ss_pred ceeeehhhhhHHHhheeeeeEEEeecccCCc
Q psy3720 23 NAVVPIGATVIVVFVGLLVVCFAVSRRKGDG 53 (190)
Q Consensus 23 N~vVPv~A~i~Viiv~ivViCv~~~rrkg~g 53 (190)
+++.+++.+++.+|+|||+.|..|.||||+-
T Consensus 148 T~IpaVVI~~iLLIA~iIa~icyrrkR~GK~ 178 (290)
T PF05454_consen 148 TFIPAVVIAAILLIAGIIACICYRRKRKGKM 178 (290)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 3566666666667778888888888888764
No 2
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=88.01 E-value=0.15 Score=45.30 Aligned_cols=69 Identities=20% Similarity=0.384 Sum_probs=0.0
Q ss_pred ceeehhhHHHHHHHHHHhheeeeeecccCCCcccccCceeEeeccCCCcccccccc----chhhcCccCCC-CCC-----
Q psy3720 84 NAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRDDIVYNQSMVGGMNTVDKRH----INEELGYIAPP-NRK----- 153 (190)
Q Consensus 84 nlvVPv~AtilViiv~ivViCv~~~Rr~g~~~~~~~dDvVYnqs~~~g~~TlDKrr----lrDELGYIaPP-NRK----- 153 (190)
+++.+++.+++.+|+|+|+.|.++.||+|+... +| - +|.=+++ +-|||-=.-|+ --|
T Consensus 148 T~IpaVVI~~iLLIA~iIa~icyrrkR~GK~~~---ee---------~-~~f~~KGiPvIF~dElee~kp~~~~~~P~Il 214 (290)
T PF05454_consen 148 TFIPAVVIAAILLIAGIIACICYRRKRKGKMSL---EE---------Q-KTFISKGIPVIFQDELEESKPEPGSKSPVIL 214 (290)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc---ch---------h-HHHHhcCCceeccccccccCCCCCCCCCeee
Confidence 466677777778888888888888888886521 11 1 1333334 67777664443 222
Q ss_pred ---CCCCCCCCCcch
Q psy3720 154 ---LPPVPGSNYNTC 165 (190)
Q Consensus 154 ---LPPVPGSnYNTC 165 (190)
=||.|.+.|+.-
T Consensus 215 keEkPPl~pp~y~~~ 229 (290)
T PF05454_consen 215 KEEKPPLPPPEYPNS 229 (290)
T ss_dssp ---------------
T ss_pred cccCCCCCCCCCCCC
Confidence 367888888753
No 3
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=81.63 E-value=1.1 Score=38.42 Aligned_cols=30 Identities=20% Similarity=0.506 Sum_probs=19.2
Q ss_pred ceeehh-hHHHHHHHHHHhheeeeeecccCC
Q psy3720 84 NAVVPI-GATVIVVFVGLLVVCFAVSRRKGD 113 (190)
Q Consensus 84 nlvVPv-~AtilViiv~ivViCv~~~Rr~g~ 113 (190)
+.+||| +.++|+.++.|++|.++.+|||..
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRSR 300 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEecccc
Confidence 788999 444555566666666666666543
No 4
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=76.59 E-value=0.28 Score=37.40 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=8.8
Q ss_pred eecccCCcceeeeee
Q psy3720 46 VSRRKGDGQTRLRGT 60 (190)
Q Consensus 46 ~~rrkg~gLT~tGGT 60 (190)
.+||+.+++....||
T Consensus 23 ~rRR~r~G~~P~~gt 37 (130)
T PF12273_consen 23 NRRRRRRGLQPIYGT 37 (130)
T ss_pred HHHHhhcCCCCcCCc
Confidence 334433477777777
No 5
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=59.62 E-value=7.4 Score=32.58 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=20.9
Q ss_pred eeeehhhhhHHHhheeeeeEEEeeccc
Q psy3720 24 AVVPIGATVIVVFVGLLVVCFAVSRRK 50 (190)
Q Consensus 24 ~vVPv~A~i~Viiv~ivViCv~~~rrk 50 (190)
+||=|+.+++.+|++++.+|..|++|+
T Consensus 54 vVVGVGg~ill~il~lvf~~c~r~kkt 80 (154)
T PF04478_consen 54 VVVGVGGPILLGILALVFIFCIRRKKT 80 (154)
T ss_pred EEecccHHHHHHHHHhheeEEEecccC
Confidence 677788888888888887777777653
No 6
>PF15102 TMEM154: TMEM154 protein family
Probab=56.02 E-value=15 Score=30.52 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=10.0
Q ss_pred eeehhhHHHHHHHHHHhheeee
Q psy3720 85 AVVPIGATVIVVFVGLLVVCFA 106 (190)
Q Consensus 85 lvVPv~AtilViiv~ivViCv~ 106 (190)
+++|.++.+++++++|++|...
T Consensus 61 IlIP~VLLvlLLl~vV~lv~~~ 82 (146)
T PF15102_consen 61 ILIPLVLLVLLLLSVVCLVIYY 82 (146)
T ss_pred EeHHHHHHHHHHHHHHHheeEE
Confidence 4567544444444444433333
No 7
>PF15102 TMEM154: TMEM154 protein family
Probab=54.60 E-value=12 Score=31.05 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=13.8
Q ss_pred eeeehhhhhHHHhheeeeeEEEeecc
Q psy3720 24 AVVPIGATVIVVFVGLLVVCFAVSRR 49 (190)
Q Consensus 24 ~vVPv~A~i~Viiv~ivViCv~~~rr 49 (190)
.++|.++.+++++++|++|-..|++|
T Consensus 61 IlIP~VLLvlLLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 61 ILIPLVLLVLLLLSVVCLVIYYKRKR 86 (146)
T ss_pred EeHHHHHHHHHHHHHHHheeEEeecc
Confidence 45675555555555555555554433
No 8
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=52.34 E-value=14 Score=31.00 Aligned_cols=28 Identities=14% Similarity=0.401 Sum_probs=20.0
Q ss_pred ceeehhhHHHHHHHHHHhheeeeeeccc
Q psy3720 84 NAVVPIGATVIVVFVGLLVVCFAVSRRK 111 (190)
Q Consensus 84 nlvVPv~AtilViiv~ivViCv~~~Rr~ 111 (190)
=+||=|+.+|+.+|++++.+|..++|++
T Consensus 53 GvVVGVGg~ill~il~lvf~~c~r~kkt 80 (154)
T PF04478_consen 53 GVVVGVGGPILLGILALVFIFCIRRKKT 80 (154)
T ss_pred EEEecccHHHHHHHHHhheeEEEecccC
Confidence 4677888888877777777676666553
No 9
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=49.80 E-value=4.8 Score=30.66 Aligned_cols=7 Identities=43% Similarity=0.871 Sum_probs=2.6
Q ss_pred eeeeecc
Q psy3720 104 CFAVSRR 110 (190)
Q Consensus 104 Cv~~~Rr 110 (190)
|+.++|+
T Consensus 21 ~~~rRR~ 27 (130)
T PF12273_consen 21 CHNRRRR 27 (130)
T ss_pred HHHHHHh
Confidence 3333333
No 10
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=43.33 E-value=66 Score=30.17 Aligned_cols=68 Identities=24% Similarity=0.111 Sum_probs=38.6
Q ss_pred eecccCCcceeeeeeecCCCCCCCCC---------CCCCcccCcCccceeehhhHHHHHHHHHHh--heeeeeecccCC
Q psy3720 46 VSRRKGDGQTRLRGTIMPPFKTSDFS---------PYLPWVPGWIDWNAVVPIGATVIVVFVGLL--VVCFAVSRRKGD 113 (190)
Q Consensus 46 ~~rrkg~gLT~tGGTIaP~~~~~~~~---------~~~~~~~~~ld~nlvVPv~AtilViiv~iv--ViCv~~~Rr~g~ 113 (190)
++.+...++-.+.||-+|...++-.+ -.+....++=|-=++|-|++..++.++|++ .+|+.+.++...
T Consensus 151 ~~q~~~~~~p~~~~~~~P~p~ts~~s~~~s~pv~~spl~p~~~~~d~l~lv~Iv~~cvaG~aAliva~~cW~Rlqr~~r 229 (341)
T PF06809_consen 151 RGQRLEPGLPSTRGTPAPTPHTSTGSPVSSGPVHMSPLEPRGSHGDGLTLVLIVVCCVAGAAALIVAGYCWYRLQREIR 229 (341)
T ss_pred cCcccCCCCCCCCCCCCCCCCCCCCCCCcCCCccccCCCCCCCCCCCeeeehhHHHHHHHHHHHHHhhheEEEeccccc
Confidence 55556778888999999987774221 122233333222255555555555555544 467777655443
No 11
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=42.97 E-value=15 Score=26.47 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=12.1
Q ss_pred ceeehhhHHHHHHHHHH
Q psy3720 84 NAVVPIGATVIVVFVGL 100 (190)
Q Consensus 84 nlvVPv~AtilViiv~i 100 (190)
-+|+|+++++.++||.+
T Consensus 32 tVVlP~l~~~~~~Ivv~ 48 (56)
T PF15012_consen 32 TVVLPTLAAVFLFIVVF 48 (56)
T ss_pred eEehhHHHHHHHHHhhe
Confidence 47889988877666543
No 12
>PHA03283 envelope glycoprotein E; Provisional
Probab=37.49 E-value=43 Score=32.99 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=27.4
Q ss_pred CCCCCcccCcCccceeehhhHHHHHHHHHHhheeeeeeccc
Q psy3720 71 SPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRK 111 (190)
Q Consensus 71 ~~~~~~~~~~ld~nlvVPv~AtilViiv~ivViCv~~~Rr~ 111 (190)
+....|-..|| -++.=++++..++++|++|-|.++-|+.
T Consensus 390 ~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~vw~c~~~r~~ 428 (542)
T PHA03283 390 NELGAWTRHYL--AFLLAIICTCAALLVALVVWGCILYRRS 428 (542)
T ss_pred CCCCccccccc--hhHHHHHHHHHHHHHHHhhhheeeehhh
Confidence 34447788888 6667777777777888888777765543
No 13
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=34.30 E-value=98 Score=24.50 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=8.4
Q ss_pred ceeehhhHHHHHHHHHHh
Q psy3720 84 NAVVPIGATVIVVFVGLL 101 (190)
Q Consensus 84 nlvVPv~AtilViiv~iv 101 (190)
+++|=|+..|++|+++|+
T Consensus 79 ~iivgvi~~Vi~Iv~~Iv 96 (179)
T PF13908_consen 79 GIIVGVICGVIAIVVLIV 96 (179)
T ss_pred eeeeehhhHHHHHHHhHh
Confidence 345555444444444443
No 14
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=33.72 E-value=40 Score=25.65 Aligned_cols=36 Identities=33% Similarity=0.451 Sum_probs=20.0
Q ss_pred eeehhhHH--HHHHHHHHhheeeeeecccCCCcccccCceeE
Q psy3720 85 AVVPIGAT--VIVVFVGLLVVCFAVSRRKGDGQTRLRDDIVY 124 (190)
Q Consensus 85 lvVPv~At--ilViiv~ivViCv~~~Rr~g~~~~~~~dDvVY 124 (190)
+++=++++ ++-++++.+|.+.++-|++..+ .||-||
T Consensus 35 ~LaGiV~~D~vlTLLIv~~vy~car~r~r~~~----~~~kvY 72 (79)
T PF07213_consen 35 LLAGIVAADAVLTLLIVLVVYYCARPRRRPTQ----EDDKVY 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCcc----cCCEEE
Confidence 44444443 3334444556666666665544 778888
No 15
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=32.64 E-value=15 Score=34.25 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=0.0
Q ss_pred hhhcCccCCCCC-CCCCCCCCCC
Q psy3720 141 NEELGYIAPPNR-KLPPVPGSNY 162 (190)
Q Consensus 141 rDELGYIaPPNR-KLPPVPGSnY 162 (190)
.||-+|-....+ +-+.-.||-|
T Consensus 416 dee~~~~~~~~~~~~~~~~gSgf 438 (439)
T PF02480_consen 416 DEEFDSDQDEERSDPPEKSGSGF 438 (439)
T ss_dssp -----------------------
T ss_pred ccchhhcccccccCCCCCCCCCC
Confidence 455556554443 2344455544
No 16
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=30.12 E-value=23 Score=28.02 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=10.8
Q ss_pred ccceeeehhhhhHHHhheee
Q psy3720 21 DWNAVVPIGATVIVVFVGLL 40 (190)
Q Consensus 21 ~lN~vVPv~A~i~Viiv~iv 40 (190)
..+++|=|+..|++|+++|+
T Consensus 77 ~~~iivgvi~~Vi~Iv~~Iv 96 (179)
T PF13908_consen 77 ITGIIVGVICGVIAIVVLIV 96 (179)
T ss_pred eeeeeeehhhHHHHHHHhHh
Confidence 44566666555555544444
No 17
>KOG4818|consensus
Probab=26.63 E-value=44 Score=31.39 Aligned_cols=31 Identities=23% Similarity=0.561 Sum_probs=20.1
Q ss_pred Cccceeeh-hhHHHHHHHHHHhheeeeeeccc
Q psy3720 81 IDWNAVVP-IGATVIVVFVGLLVVCFAVSRRK 111 (190)
Q Consensus 81 ld~nlvVP-v~AtilViiv~ivViCv~~~Rr~ 111 (190)
+|.|.++| ++-+++...+++++|-++-+||+
T Consensus 323 ~d~siv~PivVg~~l~gl~~~vliaylIgrr~ 354 (362)
T KOG4818|consen 323 VDLNIVLPIAVGAILAGLVLVVLIAYLIGRRR 354 (362)
T ss_pred cccceecchHHHHHHHHHHHHHHHHhheehee
Confidence 37799999 55566666666666555555443
No 18
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=24.97 E-value=24 Score=32.87 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=0.0
Q ss_pred hhhHHHhheeeeeEEEeecccCCc
Q psy3720 30 ATVIVVFVGLLVVCFAVSRRKGDG 53 (190)
Q Consensus 30 A~i~Viiv~ivViCv~~~rrkg~g 53 (190)
+++++++++++.+|+.++|||...
T Consensus 362 avlivVv~viv~vc~~~rrrR~~~ 385 (439)
T PF02480_consen 362 AVLIVVVGVIVWVCLRCRRRRRQR 385 (439)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHhheeeeehhccccc
Confidence 344444444555555555554433
No 19
>KOG1094|consensus
Probab=24.46 E-value=56 Score=33.48 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=18.3
Q ss_pred ehhhHHHHHHHHHHhheeeeeecc
Q psy3720 87 VPIGATVIVVFVGLLVVCFAVSRR 110 (190)
Q Consensus 87 VPv~AtilViiv~ivViCv~~~Rr 110 (190)
.=+..+|..|.+.|+++|+.|.||
T Consensus 394 ~~~f~~if~iva~ii~~~L~R~rr 417 (807)
T KOG1094|consen 394 IIIFVAIFLIVALIIALMLWRWRR 417 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888889999998666
No 20
>PF09764 Nt_Gln_amidase: N-terminal glutamine amidase; InterPro: IPR019161 This entry represents the Protein N-terminal glutamine amidohydrolase (NtQ-amidase) family of proteins. They contain a region of approximately 200 residues carrying several distinctive motifs including a WDYHV motif and one of three cysteines. Protein N-terminal glutamine amidohydrolase is responsible for degradation of N-terminal glutamine [].; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3C9Q_A.
Probab=24.33 E-value=33 Score=29.09 Aligned_cols=16 Identities=44% Similarity=0.908 Sum_probs=7.6
Q ss_pred ccccchhh-cCccCCCC
Q psy3720 136 DKRHINEE-LGYIAPPN 151 (190)
Q Consensus 136 DKrrlrDE-LGYIaPPN 151 (190)
||+|||++ =+||+||-
T Consensus 125 DRSHM~~~~G~w~~pPP 141 (184)
T PF09764_consen 125 DRSHMKDEDGNWIAPPP 141 (184)
T ss_dssp --GGGB-SSS-BSS---
T ss_pred cchhccCCCCCEeCCCC
Confidence 89999886 46999883
No 21
>PRK13686 hypothetical protein; Provisional
Probab=24.15 E-value=18 Score=24.93 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=27.6
Q ss_pred ccCcCccceeehhhHHHHHHHHHHhheeeeeecccC
Q psy3720 77 VPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKG 112 (190)
Q Consensus 77 ~~~~ld~nlvVPv~AtilViiv~ivViCv~~~Rr~g 112 (190)
+.++++|+++.=..+..++++.|=+||.++-.| +|
T Consensus 7 ~~~~iN~Evi~QL~~l~lIv~aGP~VI~lLa~R-~G 41 (43)
T PRK13686 7 FLANINLEVIFQLTFVALIVIAGPVVIFLLAFR-GG 41 (43)
T ss_pred HHHhccHHHHHHHHHHHHHHHcCCHheehhhhh-cC
Confidence 357888899999999899999998888776554 44
No 22
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=23.44 E-value=34 Score=30.03 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=21.5
Q ss_pred CcCccceeehhhHHHHHHHHHHhhee
Q psy3720 79 GWIDWNAVVPIGATVIVVFVGLLVVC 104 (190)
Q Consensus 79 ~~ld~nlvVPv~AtilViiv~ivViC 104 (190)
+-||+-++|=|-.+++++|+|++.-.
T Consensus 94 ~Glavh~~iTITvSlImViaAliTtl 119 (205)
T PF15298_consen 94 SGLAVHQIITITVSLIMVIAALITTL 119 (205)
T ss_pred CCCCceEEEEEeeehhHHHHHhhhhh
Confidence 47999999999999999999955443
No 23
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=23.20 E-value=42 Score=28.80 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=18.7
Q ss_pred eeehhhhhHHHhheeeeeEEEeecc
Q psy3720 25 VVPIGATVIVVFVGLLVVCFAVSRR 49 (190)
Q Consensus 25 vVPv~A~i~Viiv~ivViCv~~~rr 49 (190)
..|+..++.++.+..++++..|++|
T Consensus 86 ~~~i~~~l~~~t~~~~~~a~~rr~~ 110 (287)
T PF07760_consen 86 LIPILISLSIFTLVLSIIAYIRRRR 110 (287)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccc
Confidence 3577777777777777888888766
No 24
>PHA02902 putative IMV membrane protein; Provisional
Probab=22.78 E-value=45 Score=25.13 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHhheeee
Q psy3720 89 IGATVIVVFVGLLVVCFA 106 (190)
Q Consensus 89 v~AtilViiv~ivViCv~ 106 (190)
++.++.|+|+..+++...
T Consensus 7 vi~~v~v~Ivclliya~Y 24 (70)
T PHA02902 7 VILAVIVIIFCLLIYAAY 24 (70)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677888887777665
No 25
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=22.27 E-value=91 Score=26.90 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=20.4
Q ss_pred HHHHHHHhheeeeeecc-cCCCcccccCceeEee
Q psy3720 94 IVVFVGLLVVCFAVSRR-KGDGQTRLRDDIVYNQ 126 (190)
Q Consensus 94 lViiv~ivViCv~~~Rr-~g~~~~~~~dDvVYnq 126 (190)
++++++++.+++...|| ....+.++..|.-|--
T Consensus 112 lLla~~~~~~Y~~~~Rrs~~~~~~rl~Ee~~~vE 145 (202)
T PF06365_consen 112 LLLAILLGAGYCCHQRRSWSKKGQRLGEELYTVE 145 (202)
T ss_pred HHHHHHHHHHHHhhhhccCCcchhhhccCceecc
Confidence 66666666655555555 4556667777776633
No 26
>PF07004 SHIPPO-rpt: Sperm-tail PG-rich repeat; InterPro: IPR010736 This represents a short conserved region (approximately 30 residues long) that is repeated in several eukaryotic proteins of unknown function. One member of this family is annotated as possibly being related to alpha collagen.
Probab=20.97 E-value=45 Score=18.42 Aligned_cols=8 Identities=75% Similarity=1.348 Sum_probs=5.2
Q ss_pred CCCCCCCcc
Q psy3720 156 PVPGSNYNT 164 (190)
Q Consensus 156 PVPGSnYNT 164 (190)
|-||+ ||.
T Consensus 2 PGPG~-Y~~ 9 (37)
T PF07004_consen 2 PGPGS-YNP 9 (37)
T ss_pred CCCCc-ccc
Confidence 66776 763
No 27
>PF11406 Tachystatin_A: Antimicrobial peptide tachystatin A; InterPro: IPR022717 Tachystatin A contains a cysteine-stabilised triple-stranded beta-sheet and shows features common to membrane-interactive peptides. Tachystatin A is thought to have an antimicrobial activity similar to defensins.Tachystatin A is also a chitin-binding peptide []. ; PDB: 1CIX_A.
Probab=20.86 E-value=33 Score=23.65 Aligned_cols=11 Identities=55% Similarity=1.274 Sum_probs=6.9
Q ss_pred CCCCCCcchhh
Q psy3720 157 VPGSNYNTCDR 167 (190)
Q Consensus 157 VPGSnYNTCDR 167 (190)
.|||.|..|.|
T Consensus 33 fpgstygrcqr 43 (44)
T PF11406_consen 33 FPGSTYGRCQR 43 (44)
T ss_dssp STT-S-EEEE-
T ss_pred cCCcccceeec
Confidence 58999999987
No 28
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=20.49 E-value=71 Score=21.54 Aligned_cols=12 Identities=50% Similarity=0.960 Sum_probs=7.0
Q ss_pred ceeehhhHHHHH
Q psy3720 84 NAVVPIGATVIV 95 (190)
Q Consensus 84 nlvVPv~AtilV 95 (190)
-+++|+++-+++
T Consensus 16 ~VvVPV~vI~~v 27 (40)
T PF08693_consen 16 GVVVPVGVIIIV 27 (40)
T ss_pred EEEechHHHHHH
Confidence 467887654433
Done!