Query psy3720
Match_columns 190
No_of_seqs 20 out of 22
Neff 2.0
Searched_HMMs 29240
Date Fri Aug 16 23:50:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c9q_A Uncharacterized protein 56.8 3.6 0.00012 34.4 1.2 16 136-151 145-161 (205)
2 3j1r_A Archaeal adhesion filam 54.9 7.2 0.00025 23.7 2.0 16 87-102 2-17 (26)
3 1cix_A Protein (tachystatin A) 38.2 7.6 0.00026 26.0 0.3 11 157-167 33-43 (44)
4 3bz1_y Protein YCF12; electron 35.2 9.3 0.00032 25.7 0.3 35 77-112 10-44 (46)
5 1s7q_A H-2KB, H-2 class I hist 29.3 12 0.00041 31.4 0.1 8 58-65 318-325 (348)
6 2oxn_A Beta-hexosaminidase; TI 22.9 20 0.00068 30.8 0.3 24 122-146 208-235 (340)
7 2l73_A NADPH oxidase organizer 22.8 43 0.0015 25.3 2.2 21 142-162 63-83 (149)
8 4g6c_A Beta-hexosaminidase 1; 21.9 25 0.00086 30.3 0.8 24 122-146 225-252 (348)
9 4gvf_A Beta-hexosaminidase; TI 19.5 25 0.00085 30.4 0.2 24 122-146 214-241 (349)
10 2ks1_B Epidermal growth factor 15.7 49 0.0017 21.4 0.9 27 89-115 18-44 (44)
No 1
>3c9q_A Uncharacterized protein C8ORF32; medically relevant, putative involvement in human inherited and disorders of purkinje cell degeneration; HET: MSE; 1.50A {Homo sapiens}
Probab=56.82 E-value=3.6 Score=34.36 Aligned_cols=16 Identities=25% Similarity=0.702 Sum_probs=13.0
Q ss_pred ccccchhhc-CccCCCC
Q psy3720 136 DKRHINEEL-GYIAPPN 151 (190)
Q Consensus 136 DKrrlrDEL-GYIaPPN 151 (190)
||+||+||- +||+||-
T Consensus 145 DRSHM~~~dG~W~~pPP 161 (205)
T 3c9q_A 145 DRSHMKDSSGNWREPPP 161 (205)
T ss_dssp CCGGGBCSSSCBSSCCC
T ss_pred cchhccCCCCCccCCCC
Confidence 899988765 5999884
No 2
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=54.89 E-value=7.2 Score=23.69 Aligned_cols=16 Identities=19% Similarity=0.540 Sum_probs=13.2
Q ss_pred ehhhHHHHHHHHHHhh
Q psy3720 87 VPIGATVIVVFVGLLV 102 (190)
Q Consensus 87 VPv~AtilViiv~ivV 102 (190)
-|++|+++.|++++..
T Consensus 2 spiVA~~lLIviav~a 17 (26)
T 3j1r_A 2 SPVIATLLLILIAVAA 17 (26)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 4899999999888754
No 3
>1cix_A Protein (tachystatin A); antimicrobial peptide, chitin-binding peptide; NMR {Tachypleus tridentatus} SCOP: g.3.6.2
Probab=38.21 E-value=7.6 Score=25.95 Aligned_cols=11 Identities=55% Similarity=1.274 Sum_probs=9.9
Q ss_pred CCCCCCcchhh
Q psy3720 157 VPGSNYNTCDR 167 (190)
Q Consensus 157 VPGSnYNTCDR 167 (190)
.|||-|.||.|
T Consensus 33 fpgs~~g~c~r 43 (44)
T 1cix_A 33 FPGSTYGRCQR 43 (44)
T ss_dssp STTCSCEEEEC
T ss_pred CCCccceeeec
Confidence 68999999987
No 4
>3bz1_y Protein YCF12; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 3bz2_y* 3kzi_y* 3prq_y* 3prr_y*
Probab=35.25 E-value=9.3 Score=25.71 Aligned_cols=35 Identities=11% Similarity=0.370 Sum_probs=21.2
Q ss_pred ccCcCccceeehhhHHHHHHHHHHhheeeeeecccC
Q psy3720 77 VPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKG 112 (190)
Q Consensus 77 ~~~~ld~nlvVPv~AtilViiv~ivViCv~~~Rr~g 112 (190)
+.++++|+++.=..+..+++++|=+||.++-.| ||
T Consensus 10 ~~~~mN~evI~QL~~LalIv~aGPlVI~LLa~R-~G 44 (46)
T 3bz1_y 10 FLSNINFEVIAQLTMIAMIGIAGPMIIFLLAVR-RG 44 (46)
T ss_dssp ---------CCTHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHcCCHHHHHHHHHHHHHHHcccHHhhhHHhh-cC
Confidence 478899999999999999999998888766554 44
No 5
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=29.34 E-value=12 Score=31.41 Aligned_cols=8 Identities=13% Similarity=-0.064 Sum_probs=0.0
Q ss_pred eeeecCCC
Q psy3720 58 RGTIMPPF 65 (190)
Q Consensus 58 GGTIaP~~ 65 (190)
+|.+.|+.
T Consensus 318 ~~~~~~~~ 325 (348)
T 1s7q_A 318 GGDYALAP 325 (348)
T ss_dssp --------
T ss_pred CCCcccCC
Confidence 35555654
No 6
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
Probab=22.95 E-value=20 Score=30.76 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=16.7
Q ss_pred eeEeeccCCCcccccccc----chhhcCc
Q psy3720 122 IVYNQSMVGGMNTVDKRH----INEELGY 146 (190)
Q Consensus 122 vVYnqs~~~g~~TlDKrr----lrDELGY 146 (190)
++||+-.+-.+ |+.|.- ||+|+||
T Consensus 208 v~y~~id~~Pa-~~s~~ll~~lLR~elGF 235 (340)
T 2oxn_A 208 VVYPHYDAQPA-SGSSYWLKQVLREELGF 235 (340)
T ss_dssp CBBTTTBSSCG-GGCHHHHTCCCCCCTCC
T ss_pred ccccccCCcCc-ccCHHHHHHHhhcccCC
Confidence 45766544445 788754 9999998
No 7
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=22.84 E-value=43 Score=25.30 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=17.9
Q ss_pred hhcCccCCCCCCCCCCCCCCC
Q psy3720 142 EELGYIAPPNRKLPPVPGSNY 162 (190)
Q Consensus 142 DELGYIaPPNRKLPPVPGSnY 162 (190)
.|-|.+.+.+|.||+.||--.
T Consensus 63 ~e~~~~~~~~r~lP~lP~k~~ 83 (149)
T 2l73_A 63 VEAGLLRRSDRVLPKLLDAPL 83 (149)
T ss_dssp GGGSSSCSSCCSSCCCCCCSC
T ss_pred hhhcccccccccccCCCCCee
Confidence 477889999999999998754
No 8
>4g6c_A Beta-hexosaminidase 1; ssgcid, niaid, structural genomics, Na institute of allergy and infectious diseases; 1.38A {Burkholderia cenocepacia} PDB: 4gnv_A*
Probab=21.91 E-value=25 Score=30.29 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=16.7
Q ss_pred eeEeeccCCCcccccccc----chhhcCc
Q psy3720 122 IVYNQSMVGGMNTVDKRH----INEELGY 146 (190)
Q Consensus 122 vVYnqs~~~g~~TlDKrr----lrDELGY 146 (190)
++||+-.+-.+ |+.|.- ||+|+||
T Consensus 225 v~y~~id~~Pa-~~S~~ll~~lLR~elGF 252 (348)
T 4g6c_A 225 VIYTQVDKRPA-GFSRVWLQDILRGKLGF 252 (348)
T ss_dssp CEETTTCSSCG-GGCHHHHCCCCCCCSCC
T ss_pred eeecCCCCccc-cCCHHHHHHHHhhccCC
Confidence 45766554445 788753 9999997
No 9
>4gvf_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: NDG NAG MES; 1.35A {Salmonella enterica subsp} PDB: 4gvg_A* 4gvh_A* 4gvi_A*
Probab=19.51 E-value=25 Score=30.41 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=16.4
Q ss_pred eeEeeccCCCcccccccc----chhhcCc
Q psy3720 122 IVYNQSMVGGMNTVDKRH----INEELGY 146 (190)
Q Consensus 122 vVYnqs~~~g~~TlDKrr----lrDELGY 146 (190)
++||+-.+-.+ |+.|.- ||+|+||
T Consensus 214 v~y~~id~~Pa-~~S~~ll~~lLR~elGF 241 (349)
T 4gvf_A 214 VIYRAIDPRPA-SGSPYWLKTVLRQELGF 241 (349)
T ss_dssp CBCTTTCSSCG-GGCHHHHCCCCCCCTCC
T ss_pred cccCCCCCCCC-cCCHHHHHHHHHHhcCC
Confidence 34666544444 788863 9999997
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=15.71 E-value=49 Score=21.45 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhheeeeeecccCCCc
Q psy3720 89 IGATVIVVFVGLLVVCFAVSRRKGDGQ 115 (190)
Q Consensus 89 v~AtilViiv~ivViCv~~~Rr~g~~~ 115 (190)
++...++.+++.++.++++.|++-.++
T Consensus 18 VgGv~~~~ii~~~~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 18 VGALLLLLVVALGIGLFMRRRHIVRKR 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCSCC
T ss_pred hHHHHHHHHHHHHHHHHhhhhHhhccC
Done!