Query psy3720
Match_columns 190
No_of_seqs 20 out of 22
Neff 2.0
Searched_HMMs 13730
Date Fri Aug 16 23:50:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3720.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3720hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cixa_ g.3.6.2 (A:) Tachystat 22.3 9.9 0.00072 23.7 0.3 11 157-167 33-43 (44)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 17.1 8.9 0.00065 25.3 -0.9 25 26-50 22-46 (91)
3 d1xr7a_ e.8.1.4 (A:) Viral RNA 13.4 36 0.0026 27.8 1.7 70 118-189 325-396 (460)
4 d1mqea_ d.113.1.1 (A:) ADP-rib 10.2 20 0.0015 26.1 -0.8 13 137-149 86-98 (202)
5 d1ra6a_ e.8.1.4 (A:) Viral RNA 9.9 59 0.0043 26.3 2.0 70 118-189 326-397 (461)
6 d1efaa1 a.35.1.5 (A:2-60) Lac 9.9 14 0.001 23.3 -1.6 14 134-147 33-47 (59)
7 d1tr9a_ c.1.8.7 (A:) Beta-hexo 9.6 33 0.0024 26.8 0.2 24 122-146 209-236 (330)
8 d1viua_ d.113.1.1 (A:) ADP-rib 8.4 35 0.0025 24.4 -0.1 24 137-160 96-122 (189)
9 d1g0sa_ d.113.1.1 (A:) ADP-rib 7.9 37 0.0027 24.9 -0.1 25 137-161 110-137 (209)
10 d3dtub2 f.17.2.1 (B:30-129) Ba 7.7 57 0.0042 21.2 0.8 27 86-112 32-58 (100)
No 1
>d1cixa_ g.3.6.2 (A:) Tachystatin {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
Probab=22.28 E-value=9.9 Score=23.65 Aligned_cols=11 Identities=55% Similarity=1.274 Sum_probs=9.6
Q ss_pred CCCCCCcchhh
Q psy3720 157 VPGSNYNTCDR 167 (190)
Q Consensus 157 VPGSnYNTCDR 167 (190)
.|||.|..|.|
T Consensus 33 fpgstygrcqr 43 (44)
T d1cixa_ 33 FPGSTYGRCQR 43 (44)
T ss_dssp STTCSCEEEEC
T ss_pred cCCcccceeec
Confidence 58999999987
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=17.13 E-value=8.9 Score=25.32 Aligned_cols=25 Identities=12% Similarity=-0.053 Sum_probs=15.4
Q ss_pred eehhhhhHHHhheeeeeEEEeeccc
Q psy3720 26 VPIGATVIVVFVGLLVVCFAVSRRK 50 (190)
Q Consensus 26 VPv~A~i~Viiv~ivViCv~~~rrk 50 (190)
+-+.+.+.|+..+++..|+.|-|||
T Consensus 22 ~~i~~iv~v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 22 FGLMLIVVIPAILMAVGFAWKYRAS 46 (91)
T ss_dssp HHHTTTTTTHHHHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHHHHHHHhhheeeecc
Confidence 3344555566666677777776654
No 3
>d1xr7a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 16, HRV-16 [TaxId: 31708]}
Probab=13.39 E-value=36 Score=27.79 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=44.1
Q ss_pred ccCceeEeeccCCCccccccccchhhcCccCCCCCCCCCCCCCCCcchhhhccceeeecCcc--eeeeeeeccC
Q psy3720 118 LRDDIVYNQSMVGGMNTVDKRHINEELGYIAPPNRKLPPVPGSNYNTCDRIKRVLNFSSEEF--EMSVLKRRSI 189 (190)
Q Consensus 118 ~~dDvVYnqs~~~g~~TlDKrrlrDELGYIaPPNRKLPPVPGSnYNTCDRIKRg~~~~~~~~--~~~~~~~~~~ 189 (190)
.+||.+++-+-.-...|+-+ .|+ |+|+..-+-.|-.+++-.++..|+=+||+.+...... -...|.+.||
T Consensus 325 YGDD~lisv~~~~~~~~i~~-~l~-~~G~~~T~~dKs~~~~~~~~~~~~FLKR~f~~~~~~~~~~~~~L~~~sI 396 (460)
T d1xr7a_ 325 YGDDVIFSYKYKLDMEAIAK-EGQ-KYGLTITPADKSSEFKELDYGNVTFLKRGFRQDDKYKFLIHPTFPVEEI 396 (460)
T ss_dssp ETTEEEEEESSCCCHHHHHH-TTG-GGTCCEEESTTCSSCCCBCTTTCCBTTBEEEECSSCTTSEEEECCHHHH
T ss_pred ecCcceEEeCCccCHHHHHH-HHH-HcCCEecccccCCCccccccccCeEeCccCEECCCCCeEEEecCCHHHH
Confidence 48999998764322222222 255 5888654446666666678999999999988764432 2245665554
No 4
>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.15 E-value=20 Score=26.10 Aligned_cols=13 Identities=38% Similarity=0.624 Sum_probs=10.2
Q ss_pred cccchhhcCccCC
Q psy3720 137 KRHINEELGYIAP 149 (190)
Q Consensus 137 KrrlrDELGYIaP 149 (190)
+|.|++|+||.+-
T Consensus 86 ~REl~EETG~~~~ 98 (202)
T d1mqea_ 86 ARELREEVGLQAS 98 (202)
T ss_dssp HHHHHHHHCEEEE
T ss_pred HHHHhhccccccc
Confidence 3449999999873
No 5
>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=9.95 E-value=59 Score=26.27 Aligned_cols=70 Identities=13% Similarity=0.191 Sum_probs=43.1
Q ss_pred ccCceeEeeccCCCccccccccchhhcCccCCCCCCCCCCCCCCCcchhhhccceeeecCc--ceeeeeeeccC
Q psy3720 118 LRDDIVYNQSMVGGMNTVDKRHINEELGYIAPPNRKLPPVPGSNYNTCDRIKRVLNFSSEE--FEMSVLKRRSI 189 (190)
Q Consensus 118 ~~dDvVYnqs~~~g~~TlDKrrlrDELGYIaPPNRKLPPVPGSnYNTCDRIKRg~~~~~~~--~~~~~~~~~~~ 189 (190)
.+||.+++-+-.-.+.|+.+ .|+ |+|+-.-+-.|=...+-..+..|+=+||+....... .-...|.+.||
T Consensus 326 YGDD~lisv~~~~~~~~i~~-~l~-~~G~~~T~~dKs~~~~~~~~~~~~FLKR~f~~~~~~~~~~~~~L~~~sI 397 (461)
T d1ra6a_ 326 YGDDVIASYPHEVDASLLAQ-SGK-DYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEI 397 (461)
T ss_dssp ETTEEEEEESSCCCHHHHHH-HHH-HTTCCEESTTTCSSCCCCCTTTCCBTTBEEEECSSCTTSEEEECCHHHH
T ss_pred ecCceEEEeccccCHHHHHH-HHH-HcCCEeCccccccCCCCCccCCCeEecccceecCCCCcEEEecCCHHHH
Confidence 38999998663223324333 244 688876555565555556788999999998764332 23455665554
No 6
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.95 E-value=14 Score=23.32 Aligned_cols=14 Identities=43% Similarity=0.515 Sum_probs=10.3
Q ss_pred cccccc-chhhcCcc
Q psy3720 134 TVDKRH-INEELGYI 147 (190)
Q Consensus 134 TlDKrr-lrDELGYI 147 (190)
|-+|=. .-+||||.
T Consensus 33 tr~rI~~~a~~lgY~ 47 (59)
T d1efaa1 33 TREKVEAAMAELNYI 47 (59)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHCCC
Confidence 555544 77899998
No 7
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]}
Probab=9.57 E-value=33 Score=26.76 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=14.8
Q ss_pred eeEeeccCCCcccccccc----chhhcCc
Q psy3720 122 IVYNQSMVGGMNTVDKRH----INEELGY 146 (190)
Q Consensus 122 vVYnqs~~~g~~TlDKrr----lrDELGY 146 (190)
++||.-.+-.+ |+.+.- ||+|+||
T Consensus 209 ~~y~~~d~~p~-~~s~~~l~~iLR~~lgF 236 (330)
T d1tr9a_ 209 VVYPHYDAQPA-SGSSYWLKQVLREELGF 236 (330)
T ss_dssp CBCTTTCSSCG-GGCHHHHTCCCCCCTCC
T ss_pred hccccccCCcc-hhHHHHHHHHHHhhcCC
Confidence 34555443344 666544 9999997
No 8
>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}
Probab=8.38 E-value=35 Score=24.42 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=15.2
Q ss_pred cccchhhcCccCCCCCC---CCCCCCC
Q psy3720 137 KRHINEELGYIAPPNRK---LPPVPGS 160 (190)
Q Consensus 137 KrrlrDELGYIaPPNRK---LPPVPGS 160 (190)
+|.|++|+||-+.-=.+ .-|-||.
T Consensus 96 ~REL~EEtG~~~~~~~~lg~~~~spG~ 122 (189)
T d1viua_ 96 RKEAIEETGYEVGEVRKLFELYMSPGG 122 (189)
T ss_dssp HHHHHHHHSCCCCCCEEEEEEESCTTT
T ss_pred HHHHHHhhCCcceEEEEcceeecCccc
Confidence 45599999998753333 2344653
No 9
>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}
Probab=7.95 E-value=37 Score=24.85 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=15.3
Q ss_pred cccchhhcCccCCCCC---CCCCCCCCC
Q psy3720 137 KRHINEELGYIAPPNR---KLPPVPGSN 161 (190)
Q Consensus 137 KrrlrDELGYIaPPNR---KLPPVPGSn 161 (190)
||.|++|+||-+--=. .+-|-||..
T Consensus 110 ~REL~EEtG~~~~~l~~l~~~~~spg~~ 137 (209)
T d1g0sa_ 110 RREAIEEAGLIVKRTKPVLSFLASPGGT 137 (209)
T ss_dssp HHHHHHHHCCCCCCEEEEEEEESCTTTB
T ss_pred HHHHHhhhcccccceeeccccccCCccc
Confidence 3449999999863111 134677753
No 10
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.70 E-value=57 Score=21.18 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=17.9
Q ss_pred eehhhHHHHHHHHHHhheeeeeecccC
Q psy3720 86 VVPIGATVIVVFVGLLVVCFAVSRRKG 112 (190)
Q Consensus 86 vVPv~AtilViiv~ivViCv~~~Rr~g 112 (190)
+.=+++.|.+++.++.+.++.+.|++.
T Consensus 32 v~~i~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 32 ILVIIAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 344666667777777777777777654
Done!