BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy3720
MPPFKTSDFSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRGT
IMPPFKTSDFSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRD
DIVYNQSMVGGMNTVDKRHINEELGYIAPPNRKLPPVPGSNYNTCDRIKRVLNFSSEEFE
MSVLKRRSIS

High Scoring Gene Products

Symbol, full name Information P value
Dscam
Down syndrome cell adhesion molecule 		protein from Drosophila melanogaster 1.4e-20

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy3720
        (190 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0033159 - symbol:Dscam "Down syndrome cell adhesio...   255  1.4e-20   2


>FB|FBgn0033159 [details] [associations]
            symbol:Dscam "Down syndrome cell adhesion molecule"
            species:7227 "Drosophila melanogaster" [GO:0005887 "integral to
            plasma membrane" evidence=ISM;ISS] [GO:0007411 "axon guidance"
            evidence=IGI;IMP;TAS] [GO:0008046 "axon guidance receptor activity"
            evidence=IMP;NAS] [GO:0007422 "peripheral nervous system
            development" evidence=IMP] [GO:0016319 "mushroom body development"
            evidence=IMP] [GO:0007413 "axonal fasciculation" evidence=IMP]
            [GO:0006909 "phagocytosis" evidence=IMP] [GO:0051635 "bacterial
            cell surface binding" evidence=IDA] [GO:0048666 "neuron
            development" evidence=IMP] [GO:0030424 "axon" evidence=IDA]
            [GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA] [GO:0043025
            "neuronal cell body" evidence=IDA] [GO:0030425 "dendrite"
            evidence=IDA] [GO:0042802 "identical protein binding" evidence=IPI]
            [GO:0021551 "central nervous system morphogenesis" evidence=IMP]
            [GO:0048846 "axon extension involved in axon guidance"
            evidence=IMP] [GO:0042803 "protein homodimerization activity"
            evidence=IPI] InterPro:IPR003961 InterPro:IPR007110 Pfam:PF00041
            PROSITE:PS50835 PROSITE:PS50853 SMART:SM00060 EMBL:AE013599
            GO:GO:0005887 Gene3D:2.60.40.10 InterPro:IPR013783 GO:GO:0030424
            GO:GO:0043025 GO:GO:0030425 SUPFAM:SSF49265 InterPro:IPR003599
            SMART:SM00409 InterPro:IPR003598 SMART:SM00408 GO:GO:0007422
            GO:GO:0006909 GO:GO:0016319 InterPro:IPR013098 Pfam:PF07679
            GO:GO:0007413 GO:GO:0051635 GO:GO:0021551 GO:GO:0048846 CTD:1826
            GO:GO:0070593 GeneTree:ENSGT00690000101869 GO:GO:0008046
            UniGene:Dm.2832 GeneID:35652 KEGG:dme:Dmel_CG17800
            FlyBase:FBgn0033159 GenomeRNAi:35652 NextBio:794432
            InterPro:IPR021012 Pfam:PF12355 RefSeq:NP_001036503.1
            ProteinModelPortal:Q0E9K8 SMR:Q0E9K8 STRING:Q0E9K8 PRIDE:Q0E9K8
            EnsemblMetazoa:FBtr0111102 UCSC:CG17800-RAN Bgee:Q0E9K8
            Uniprot:Q0E9K8
        Length = 2037

 Score = 255 (94.8 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
 Identities = 56/104 (53%), Positives = 67/104 (64%)

Query:    74 LP-WVPGWIDWNAVVPIGATXXXXXXXXXXXXXXXSRRKGD----GQTRLRDDIVYNQSM 128
             LP W+P W+D N +VP+ AT               SRR+ D    GQ  +  D+VYNQ+M
Sbjct:  1619 LPAWMPEWLDLNFMVPLIATVVVVAVGICVVCVALSRRRADDMRGGQKDVYYDVVYNQTM 1678

Query:   129 VGGMNTVDKRH--INEELGYIAPPNRKLPPVPGSNYNTCDRIKR 170
               G  T+DKR   + +ELGYIAPPNRKLPPVPGSNYNTCDRIKR
Sbjct:  1679 GPGA-TLDKRRPDLRDELGYIAPPNRKLPPVPGSNYNTCDRIKR 1721

 Score = 34 (17.0 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
 Identities = 4/10 (40%), Positives = 7/10 (70%)

Query:    61 IMPPFKTSDF 70
             + PPF+  D+
Sbjct:    97 VFPPFRAEDY 106


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.138   0.451    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      190       160   0.00097  106 3  11 22  0.39    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  564 (60 KB)
  Total size of DFA:  150 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:02
  No. of threads or processors used:  24
  Search cpu time:  12.54u 0.08s 12.62t   Elapsed:  00:00:06
  Total cpu time:  12.54u 0.08s 12.62t   Elapsed:  00:00:08
  Start:  Thu Aug 15 14:52:15 2013   End:  Thu Aug 15 14:52:23 2013

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