RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3720
         (190 letters)



>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I
           {Escherichia coli [TaxId: 562]}
          Length = 501

 Score = 29.2 bits (65), Expect = 0.30
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 78  PGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRDD 121
           P +     +   GA +I + +  LV+   VS R  D    L  D
Sbjct: 438 PQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGD 481



 Score = 29.2 bits (65), Expect = 0.36
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 17  PGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKG 51
           P +     +   GA +I + +  LV+   VS R  
Sbjct: 438 PQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDR 472


>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase
           subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 538

 Score = 29.0 bits (65), Expect = 0.36
 Identities = 6/35 (17%), Positives = 12/35 (34%)

Query: 17  PGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKG 51
             +  WN V  +GA +        +     +  +G
Sbjct: 475 EAFATWNFVSSLGAFLSFASFLFFLGVIFYTLTRG 509



 Score = 29.0 bits (65), Expect = 0.36
 Identities = 6/35 (17%), Positives = 12/35 (34%)

Query: 78  PGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKG 112
             +  WN V  +GA +        +     +  +G
Sbjct: 475 EAFATWNFVSSLGAFLSFASFLFFLGVIFYTLTRG 509


>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 514

 Score = 28.6 bits (64), Expect = 0.54
 Identities = 6/35 (17%), Positives = 14/35 (40%)

Query: 17  PGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKG 51
             +  WN +  +G+ + +  V L+V     +    
Sbjct: 445 DAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASK 479



 Score = 28.6 bits (64), Expect = 0.54
 Identities = 6/35 (17%), Positives = 14/35 (40%)

Query: 78  PGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKG 112
             +  WN +  +G+ + +  V L+V     +    
Sbjct: 445 DAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASK 479


>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
           subunit I {Thermus thermophilus [TaxId: 274]}
          Length = 549

 Score = 27.7 bits (61), Expect = 0.95
 Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 9/94 (9%)

Query: 9   FSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRGTIMPPFKTS 68
            +      P          +   V++V + L +          + +  L      PF   
Sbjct: 440 IAQVPDAYPHAAVPMVFNVLAGIVLLVALLLFIYGLFSVLLSRERKPELAEA-PLPFAEV 498

Query: 69  DFSPYLPWVPGWID----WNAVVPIGATVIVVFV 98
              P    +   +D    W AV    A ++VV  
Sbjct: 499 ISGPEDRRLVLAMDRIGFWFAV----AAILVVLA 528



 Score = 27.7 bits (61), Expect = 1.1
 Identities = 5/52 (9%), Positives = 14/52 (26%)

Query: 70  FSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRDD 121
            +      P          +   V++V + L +          + +  L + 
Sbjct: 440 IAQVPDAYPHAAVPMVFNVLAGIVLLVALLLFIYGLFSVLLSRERKPELAEA 491


>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase
          subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}
          Length = 74

 Score = 24.0 bits (52), Expect = 5.3
 Identities = 6/24 (25%), Positives = 13/24 (54%)

Query: 46 VSRRKGDGQTRLRGTIMPPFKTSD 69
          +++ +   +    G IMPP++ S 
Sbjct: 19 ITKEEDGEEVTYEGYIMPPYELSA 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.460 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 802,789
Number of extensions: 37356
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 12
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.3 bits)