BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3721
(207 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|383848340|ref|XP_003699809.1| PREDICTED: RNA-binding protein lark-like [Megachile rotundata]
Length = 351
Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 131/169 (77%), Positives = 149/169 (88%), Gaps = 1/169 (0%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
MPGFSSVGTFKIFIGN+ TS I+PLFEKYGKVVECDVVKNYGFVHMEN+E GR AI
Sbjct: 1 MPGFSSVGTFKIFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAI 60
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ LNGQIV+ +P+K EAA SRKGPNTPTTK+FVGNL+DNT+AP+VRELF YGTVVECDI
Sbjct: 61 QNLNGQIVHGQPIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVRELFAKYGTVVECDI 120
Query: 147 VRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
VRNYGFVH+++ D+N IKELNG MVDG+PMKVQISTSRVRQRPG+ +
Sbjct: 121 VRNYGFVHLEATGDVNDAIKELNGQMVDGQPMKVQISTSRVRQRPGMGD 169
>gi|350416927|ref|XP_003491172.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein lark-like
[Bombus impatiens]
Length = 458
Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 134/191 (70%), Positives = 155/191 (81%), Gaps = 1/191 (0%)
Query: 5 DQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE 64
D+ +SR S + MPGFSSVGTFKIFIGN+ TS I+PLFEKYGKVVE
Sbjct: 73 DRGHCFNISRTSGRGKFYNEPKMPGFSSVGTFKIFIGNLADKTSNADIKPLFEKYGKVVE 132
Query: 65 CDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSD 124
CDVVKNYGFVHMEN+E GR AI+ LNG IV+ +P+K EAA SRKGPNTPTTK+FVGNL+D
Sbjct: 133 CDVVKNYGFVHMENEEAGRNAIQNLNGHIVHGQPIKCEAAKSRKGPNTPTTKIFVGNLTD 192
Query: 125 NTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIST 183
NT+AP+VRELF YGTVVECDIVRNYGFVH+++ D+N IKELNG MVDG+PMKVQIST
Sbjct: 193 NTKAPQVRELFAKYGTVVECDIVRNYGFVHLEATGDVNDAIKELNGQMVDGQPMKVQIST 252
Query: 184 SRVRQRPGVDE 194
SRVRQRPG+ +
Sbjct: 253 SRVRQRPGMGD 263
>gi|332031363|gb|EGI70876.1| RNA-binding protein lark [Acromyrmex echinatior]
Length = 355
Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 128/169 (75%), Positives = 148/169 (87%), Gaps = 1/169 (0%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
MPGFSSVGTFKIFIGN+ TS I+PLFEKYGKVVECDVVKNYGFVHMEN+E GR AI
Sbjct: 1 MPGFSSVGTFKIFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAI 60
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ LNG +V+ +P+K EAA SRKGPNTPTTK+FVGNL+DNT+AP+VRELF YGTVVECDI
Sbjct: 61 QNLNGHMVHGQPIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVRELFAKYGTVVECDI 120
Query: 147 VRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
VRNYGFVH+++ D+N IKELNG +VDG+PMKVQISTSRVRQRPG+ +
Sbjct: 121 VRNYGFVHLEATGDVNDAIKELNGQIVDGQPMKVQISTSRVRQRPGMGD 169
>gi|322797564|gb|EFZ19608.1| hypothetical protein SINV_13630 [Solenopsis invicta]
Length = 324
Score = 265 bits (677), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 128/169 (75%), Positives = 148/169 (87%), Gaps = 1/169 (0%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
MPGFSSVGTFKIFIGN+ TS I+PLFEKYGKVVECDVVKNYGFVHMEN+E GR AI
Sbjct: 1 MPGFSSVGTFKIFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAI 60
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ LNG +V+ +P+K EAA SRKGPNTPTTK+FVGNL+DNT+AP+VRELF YGTVVECDI
Sbjct: 61 QNLNGHMVHGQPIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVRELFAKYGTVVECDI 120
Query: 147 VRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
VRNYGFVH+++ D+N IKELNG +VDG+PMKVQISTSRVRQRPG+ +
Sbjct: 121 VRNYGFVHLEATGDVNDAIKELNGQIVDGQPMKVQISTSRVRQRPGMGD 169
>gi|307187784|gb|EFN72750.1| RNA-binding protein lark [Camponotus floridanus]
Length = 331
Score = 265 bits (677), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 128/169 (75%), Positives = 148/169 (87%), Gaps = 1/169 (0%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
MPGFSSVGTFKIFIGN+ TS I+PLFEKYGKVVECDVVKNYGFVHMEN+E GR AI
Sbjct: 1 MPGFSSVGTFKIFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAI 60
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ LNG +V+ +P+K EAA SRKGPNTPTTK+FVGNL+DNT+AP+VRELF YGTVVECDI
Sbjct: 61 QNLNGHMVHGQPIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVRELFAKYGTVVECDI 120
Query: 147 VRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
VRNYGFVH+++ D+N IKELNG +VDG+PMKVQISTSRVRQRPG+ +
Sbjct: 121 VRNYGFVHLEATGDVNDAIKELNGQIVDGQPMKVQISTSRVRQRPGMGD 169
>gi|307195687|gb|EFN77529.1| RNA-binding protein lark [Harpegnathos saltator]
Length = 325
Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 128/169 (75%), Positives = 148/169 (87%), Gaps = 1/169 (0%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
MPGFSSVGTFKIFIGN+ TS I+PLFEKYGKVVECDVVKNYGFVHMEN+E GR AI
Sbjct: 1 MPGFSSVGTFKIFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAI 60
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ LNG +V+ +P+K EAA SRKGPNTPTTK+FVGNL+DNT+AP+VRELF YGTVVECDI
Sbjct: 61 QNLNGHMVHGQPIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVRELFAKYGTVVECDI 120
Query: 147 VRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
VRNYGFVH+++ D+N IKELNG +VDG+PMKVQISTSRVRQRPG+ +
Sbjct: 121 VRNYGFVHLEATGDVNDAIKELNGQIVDGQPMKVQISTSRVRQRPGMGD 169
>gi|91088839|ref|XP_970745.1| PREDICTED: similar to lark CG8597-PA [Tribolium castaneum]
gi|270012337|gb|EFA08785.1| hypothetical protein TcasGA2_TC006476 [Tribolium castaneum]
Length = 358
Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/169 (73%), Positives = 147/169 (86%), Gaps = 1/169 (0%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
MPGFSS GTFKIFIGN+ T+V +RPLFEKYGKVVECDVVKNYGFVHMEN+ EGR AI
Sbjct: 1 MPGFSSAGTFKIFIGNLAEKTAVTDLRPLFEKYGKVVECDVVKNYGFVHMENESEGREAI 60
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ LNG ++N +P+K EAA SRK P TPTTK+FVGNL+DNT+AP++RELF YGTVVECDI
Sbjct: 61 QNLNGHMLNGQPMKCEAAKSRKAPQTPTTKIFVGNLTDNTKAPQIRELFKKYGTVVECDI 120
Query: 147 VRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
VRNYGFVH++S D+N+ IKELNG +VDG+PMKVQ+STSRVRQRPG+ +
Sbjct: 121 VRNYGFVHLESSGDVNEAIKELNGTLVDGQPMKVQVSTSRVRQRPGMGD 169
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMV 172
T K+F+GNL++ T ++R LF YG VVECD+V+NYGFVH+++ + + I+ LNG M+
Sbjct: 9 TFKIFIGNLAEKTAVTDLRPLFEKYGKVVECDVVKNYGFVHMENESEGREAIQNLNGHML 68
Query: 173 DGKPMKVQISTSRVRQRPGVDEVVIG 198
+G+PMK + + SR + ++ +G
Sbjct: 69 NGQPMKCEAAKSRKAPQTPTTKIFVG 94
>gi|380021805|ref|XP_003694747.1| PREDICTED: RNA-binding protein lark-like [Apis florea]
Length = 351
Score = 262 bits (670), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 127/169 (75%), Positives = 146/169 (86%), Gaps = 1/169 (0%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
MPGFSSVGTFKIFIGN+ T+ I+PLFEKYGKVVECDVVKNYGFVHMEN+E GR AI
Sbjct: 1 MPGFSSVGTFKIFIGNLADKTTNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAI 60
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ LNG IV+ + +K EAA SRKGPNTPTTK+FVGNL+DNT+AP+VRELF YGTVVECDI
Sbjct: 61 QNLNGHIVHGQEIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVRELFAKYGTVVECDI 120
Query: 147 VRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
VRNYGFVH+++ D+N IKELNG MVDG+ MKVQISTSRVRQRPG+ +
Sbjct: 121 VRNYGFVHLEATGDVNDAIKELNGRMVDGQAMKVQISTSRVRQRPGMGD 169
>gi|328786023|ref|XP_623841.3| PREDICTED: RNA-binding protein lark-like isoform 1 [Apis mellifera]
Length = 356
Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 127/169 (75%), Positives = 146/169 (86%), Gaps = 1/169 (0%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
MPGFSSVGTFKIFIGN+ T+ I+PLFEKYGKVVECDVVKNYGFVHMEN+E GR AI
Sbjct: 1 MPGFSSVGTFKIFIGNLADKTTNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAI 60
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ LNG IV+ + +K EAA SRKGPNTPTTK+FVGNL+DNT+AP+VRELF YGTVVECDI
Sbjct: 61 QNLNGHIVHGQEIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVRELFAKYGTVVECDI 120
Query: 147 VRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
VRNYGFVH+++ D+N IKELNG MVDG+ MKVQISTSRVRQRPG+ +
Sbjct: 121 VRNYGFVHLEATGDVNDAIKELNGRMVDGQAMKVQISTSRVRQRPGMGD 169
>gi|332377011|gb|AEE63645.1| unknown [Dendroctonus ponderosae]
Length = 356
Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 121/167 (72%), Positives = 146/167 (87%), Gaps = 1/167 (0%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
MPGFS+ GTFKIF+GN+ TSV +RPLFEKYGKVVECDVVKNYGFVHMEN+ EGR AI
Sbjct: 1 MPGFSTAGTFKIFVGNLAEKTSVSELRPLFEKYGKVVECDVVKNYGFVHMENESEGREAI 60
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
++LNGQ++N + +K EAA SRK P TPT K+FVGNL+DNT+AP++RELF +GTVVECDI
Sbjct: 61 QQLNGQMINGQSMKCEAAKSRKAPQTPTIKIFVGNLTDNTKAPQIRELFKKFGTVVECDI 120
Query: 147 VRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
VRNYGFVH++S D+N+ IK+LNG +VDG+PMKVQISTSRVRQRPG+
Sbjct: 121 VRNYGFVHLESSGDVNEAIKDLNGQIVDGQPMKVQISTSRVRQRPGM 167
>gi|242007024|ref|XP_002424342.1| Arginine/serine-rich-splicing factor RSP31, putative [Pediculus
humanus corporis]
gi|212507742|gb|EEB11604.1| Arginine/serine-rich-splicing factor RSP31, putative [Pediculus
humanus corporis]
Length = 326
Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 121/167 (72%), Positives = 148/167 (88%), Gaps = 1/167 (0%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
MPGFSSVGTFKIF+GN++ T+ I+PLFEKYGKVVECD+VKNYGFVHME+++ GR AI
Sbjct: 1 MPGFSSVGTFKIFVGNLSDKTTKADIQPLFEKYGKVVECDIVKNYGFVHMEHEDSGRDAI 60
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ L+G +V+ +K+EAATSRKGP TPTTKVFVGNL+DNT+AP+VR LF YGTVVECDI
Sbjct: 61 QNLDGYLVHGSSIKVEAATSRKGPQTPTTKVFVGNLTDNTKAPQVRALFAKYGTVVECDI 120
Query: 147 VRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
VRNYGFVHI+S D +N+CI+ELNG ++DG+PMKVQ+STSRVRQRPG+
Sbjct: 121 VRNYGFVHIESSDNVNECIRELNGYILDGQPMKVQLSTSRVRQRPGM 167
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 172
T K+FVGNLSD T +++ LF YG VVECDIV+NYGFVH++ D + I+ L+G +V
Sbjct: 9 TFKIFVGNLSDKTTKADIQPLFEKYGKVVECDIVKNYGFVHMEHEDSGRDAIQNLDGYLV 68
Query: 173 DGKPMKVQISTSRVRQRPGVDEVVIG 198
G +KV+ +TSR + +V +G
Sbjct: 69 HGSSIKVEAATSRKGPQTPTTKVFVG 94
>gi|328712079|ref|XP_001943947.2| PREDICTED: RNA-binding protein lark-like isoform 1 [Acyrthosiphon
pisum]
Length = 374
Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/187 (65%), Positives = 150/187 (80%), Gaps = 4/187 (2%)
Query: 6 QQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVEC 65
++ VK S+ + N S N SSV TFKIFIGN++ T+ IRPLFEKYGKVVEC
Sbjct: 24 EETAVKEKMPSDTESNTSFNN----SSVRTFKIFIGNLSEKTTSSDIRPLFEKYGKVVEC 79
Query: 66 DVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDN 125
DV+KN+GFVHM++D GR AIK LNG +VN+ +K+EAATSR+GPNTPTTK+FVGNLS+
Sbjct: 80 DVMKNFGFVHMDDDTTGRAAIKALNGSMVNDLAMKVEAATSRRGPNTPTTKIFVGNLSET 139
Query: 126 TRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
T+A EVRELF YGTVVECDIVR YGFVHIDS D+++ IK+LNG M+DG+P+KVQIS SR
Sbjct: 140 TKANEVRELFGRYGTVVECDIVRTYGFVHIDSTDVSRLIKDLNGHMLDGQPIKVQISNSR 199
Query: 186 VRQRPGV 192
VRQRPG+
Sbjct: 200 VRQRPGM 206
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 8/124 (6%)
Query: 84 TAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
TA+KE + P E+ TS + T K+F+GNLS+ T + ++R LF YG VVE
Sbjct: 26 TAVKE-------KMPSDTESNTSFNNSSVRTFKIFIGNLSEKTTSSDIRPLFEKYGKVVE 78
Query: 144 CDIVRNYGFVHIDSPDINKC-IKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKSV 202
CD+++N+GFVH+D + IK LNG MV+ MKV+ +TSR ++ +G S
Sbjct: 79 CDVMKNFGFVHMDDDTTGRAAIKALNGSMVNDLAMKVEAATSRRGPNTPTTKIFVGNLSE 138
Query: 203 PVQA 206
+A
Sbjct: 139 TTKA 142
>gi|328712077|ref|XP_003244723.1| PREDICTED: RNA-binding protein lark-like isoform 2 [Acyrthosiphon
pisum]
Length = 389
Score = 253 bits (645), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 123/187 (65%), Positives = 150/187 (80%), Gaps = 4/187 (2%)
Query: 6 QQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVEC 65
++ VK S+ + N S N SSV TFKIFIGN++ T+ IRPLFEKYGKVVEC
Sbjct: 24 EETAVKEKMPSDTESNTSFNN----SSVRTFKIFIGNLSEKTTSSDIRPLFEKYGKVVEC 79
Query: 66 DVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDN 125
DV+KN+GFVHM++D GR AIK LNG +VN+ +K+EAATSR+GPNTPTTK+FVGNLS+
Sbjct: 80 DVMKNFGFVHMDDDTTGRAAIKALNGSMVNDLAMKVEAATSRRGPNTPTTKIFVGNLSET 139
Query: 126 TRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
T+A EVRELF YGTVVECDIVR YGFVHIDS D+++ IK+LNG M+DG+P+KVQIS SR
Sbjct: 140 TKANEVRELFGRYGTVVECDIVRTYGFVHIDSTDVSRLIKDLNGHMLDGQPIKVQISNSR 199
Query: 186 VRQRPGV 192
VRQRPG+
Sbjct: 200 VRQRPGM 206
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 8/124 (6%)
Query: 84 TAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
TA+KE + P E+ TS + T K+F+GNLS+ T + ++R LF YG VVE
Sbjct: 26 TAVKE-------KMPSDTESNTSFNNSSVRTFKIFIGNLSEKTTSSDIRPLFEKYGKVVE 78
Query: 144 CDIVRNYGFVHIDSPDINKC-IKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKSV 202
CD+++N+GFVH+D + IK LNG MV+ MKV+ +TSR ++ +G S
Sbjct: 79 CDVMKNFGFVHMDDDTTGRAAIKALNGSMVNDLAMKVEAATSRRGPNTPTTKIFVGNLSE 138
Query: 203 PVQA 206
+A
Sbjct: 139 TTKA 142
>gi|328716895|ref|XP_001948178.2| PREDICTED: RNA-binding protein lark-like [Acyrthosiphon pisum]
Length = 376
Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 122/187 (65%), Positives = 148/187 (79%), Gaps = 4/187 (2%)
Query: 6 QQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVEC 65
++ VK S+ + N S N SSVGTFKIFIGN++ T+ IRPLFEKYGKVVEC
Sbjct: 24 EETAVKEKMPSDTESNTSLNN----SSVGTFKIFIGNLSEKTTSSDIRPLFEKYGKVVEC 79
Query: 66 DVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDN 125
DV+KN+GFVHM++D GR AIK LNG +VN+ +K+E ATSR+GPNTPTTK+FVGNLS+
Sbjct: 80 DVMKNFGFVHMDDDTTGRAAIKALNGSMVNDLAMKVETATSRRGPNTPTTKIFVGNLSET 139
Query: 126 TRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
T+ EVRELF YGTVVECDIVR YGFVHIDS D+++ IK+LNG M+DGKP+KVQIS SR
Sbjct: 140 TKENEVRELFERYGTVVECDIVRTYGFVHIDSTDVSRLIKDLNGYMLDGKPIKVQISNSR 199
Query: 186 VRQRPGV 192
VR RPG+
Sbjct: 200 VRPRPGM 206
>gi|112983834|ref|NP_001037293.1| RNA-binding protein lark [Bombyx mori]
gi|57236850|gb|AAW48898.1| lark-PA [Bombyx mori]
Length = 343
Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 119/169 (70%), Positives = 144/169 (85%), Gaps = 4/169 (2%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
MPG GTFKIFIGN++ T+ +RPLFEKYG VVECD+V+NYGFVHMEN++ GR AI
Sbjct: 1 MPG---TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAI 57
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ LNG++V+ + +KIEAA SRK P+TPTTK+FVGNL+D TRAPEVRELF +GTVVECDI
Sbjct: 58 QNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 117
Query: 147 VRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
VRNYGFVH+D+ D+N IKELNGMMVDG+PMKVQ+STSRVRQRPG+ +
Sbjct: 118 VRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGD 166
>gi|357621997|gb|EHJ73625.1| RNA-binding protein lark [Danaus plexippus]
Length = 341
Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 118/169 (69%), Positives = 145/169 (85%), Gaps = 4/169 (2%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
MPG GTFKIF+GN++ T+ +RPLFEK+G VVECD+V+NYGFVHMEN++ GR AI
Sbjct: 1 MPG---AGTFKIFVGNLSDKTTDADLRPLFEKFGTVVECDIVRNYGFVHMENEQVGREAI 57
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ LNG++V+ + +KIEAA SRK P+TPTTK+FVGNL+D TRAPEVRELF +GTVVECDI
Sbjct: 58 QNLNGEVVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 117
Query: 147 VRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
VRNYGFVH+D S D+N+ IKELNGMMVDG+PMKVQ+STSRVRQRPG+ +
Sbjct: 118 VRNYGFVHLDASGDVNEAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGD 166
>gi|157138308|ref|XP_001657237.1| RNA binding motif protein 4,lark [Aedes aegypti]
gi|108869514|gb|EAT33739.1| AAEL013982-PA [Aedes aegypti]
Length = 330
Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 112/162 (69%), Positives = 138/162 (85%), Gaps = 1/162 (0%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG 91
+ GTFK+FIGNV+ T +RPLFEKYG VVECDVVKNYGFVHMEN+++GR AI+ L+G
Sbjct: 3 ASGTFKLFIGNVDEKTQPSDLRPLFEKYGTVVECDVVKNYGFVHMENEDQGRDAIQNLDG 62
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYG 151
+VN K +K+EAA +R+ PN TTK+FVGNL+D TRAP+VRELF YGTVVECDIVRNYG
Sbjct: 63 YVVNGKAIKVEAARNRRAPNANTTKIFVGNLTDVTRAPQVRELFQKYGTVVECDIVRNYG 122
Query: 152 FVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
FVH+D + D+N+ I+ELNGMMVDG+PMKVQ+STSRVR +PG+
Sbjct: 123 FVHLDPTGDVNEAIRELNGMMVDGQPMKVQVSTSRVRPKPGM 164
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELN 168
P + T K+F+GN+ + T+ ++R LF YGTVVECD+V+NYGFVH+++ D + I+ L+
Sbjct: 2 PASGTFKLFIGNVDEKTQPSDLRPLFEKYGTVVECDVVKNYGFVHMENEDQGRDAIQNLD 61
Query: 169 GMMVDGKPMKVQISTSRVRQRPGVDEVVIG 198
G +V+GK +KV+ + +R ++ +G
Sbjct: 62 GYVVNGKAIKVEAARNRRAPNANTTKIFVG 91
>gi|125977312|ref|XP_001352689.1| GA21193 [Drosophila pseudoobscura pseudoobscura]
gi|54641438|gb|EAL30188.1| GA21193 [Drosophila pseudoobscura pseudoobscura]
Length = 352
Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 112/169 (66%), Positives = 137/169 (81%), Gaps = 4/169 (2%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
MPG GTFK+FIGN++ T +R LFEKYG VVECDVVKNYGFVHME +++GR AI
Sbjct: 1 MPG---AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAI 57
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ LNG ++N+ +K+EAA SR+ PNTPTTK+FVGNL+D TRAPEVRELF YGTVVECDI
Sbjct: 58 QNLNGYVLNDNAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDI 117
Query: 147 VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
VRNYGFVH+D D+ IKELNG +VDG+P+KVQ+STSRVR +PG+ +
Sbjct: 118 VRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGD 166
>gi|17647581|ref|NP_523957.1| lark, isoform A [Drosophila melanogaster]
gi|24659966|ref|NP_729237.1| lark, isoform B [Drosophila melanogaster]
gi|24659971|ref|NP_729238.1| lark, isoform C [Drosophila melanogaster]
gi|24659976|ref|NP_729239.1| lark, isoform D [Drosophila melanogaster]
gi|24659981|ref|NP_729240.1| lark, isoform E [Drosophila melanogaster]
gi|62510825|sp|Q94901.1|LARK_DROME RecName: Full=RNA-binding protein lark
gi|1518654|gb|AAB07067.1| RNA-binding protein lark [Drosophila melanogaster]
gi|7295256|gb|AAF50578.1| lark, isoform A [Drosophila melanogaster]
gi|16769574|gb|AAL29006.1| LD40792p [Drosophila melanogaster]
gi|23094008|gb|AAN12053.1| lark, isoform B [Drosophila melanogaster]
gi|23094009|gb|AAN12054.1| lark, isoform C [Drosophila melanogaster]
gi|23094010|gb|AAN12055.1| lark, isoform D [Drosophila melanogaster]
gi|23094011|gb|AAN12056.1| lark, isoform E [Drosophila melanogaster]
gi|220946850|gb|ACL85968.1| lark-PA [synthetic construct]
gi|220956448|gb|ACL90767.1| lark-PA [synthetic construct]
Length = 352
Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 113/169 (66%), Positives = 136/169 (80%), Gaps = 4/169 (2%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
MPG GTFK+FIGN++ T +R LFEKYG VVECDVVKNYGFVHME +++GR AI
Sbjct: 1 MPG---AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAI 57
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ LNG +NE +K+EAA SR+ PNTPTTK+FVGNL+D TRAPEVRELF YGTVVECDI
Sbjct: 58 QNLNGYTLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDI 117
Query: 147 VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
VRNYGFVH+D D+ IKELNG +VDG+P+KVQ+STSRVR +PG+ +
Sbjct: 118 VRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGD 166
>gi|170046272|ref|XP_001850696.1| RNA binding motif protein 4,lark [Culex quinquefasciatus]
gi|167869088|gb|EDS32471.1| RNA binding motif protein 4,lark [Culex quinquefasciatus]
Length = 332
Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/162 (67%), Positives = 135/162 (83%), Gaps = 1/162 (0%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG 91
+ TFK+FIGNV+ T +RPLFEKYG VVECDVVKNYGFVHME ++ GR AI+ L+G
Sbjct: 3 ASATFKLFIGNVDEKTQPSDLRPLFEKYGTVVECDVVKNYGFVHMETEDMGRDAIQNLDG 62
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYG 151
+VN K +K+EAA +R+ PN+ TTK+FVGNL+D TRAP+VRELF YGTVVECDIVRNYG
Sbjct: 63 YVVNGKAIKVEAARNRRAPNSNTTKIFVGNLTDVTRAPQVRELFQKYGTVVECDIVRNYG 122
Query: 152 FVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
FVH+D D+N+ I+ELNGMMVDG+PMKVQ+STSRVR +PG+
Sbjct: 123 FVHLDPQGDVNEAIRELNGMMVDGQPMKVQVSTSRVRPKPGM 164
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELN 168
P + T K+F+GN+ + T+ ++R LF YGTVVECD+V+NYGFVH+++ D+ + I+ L+
Sbjct: 2 PASATFKLFIGNVDEKTQPSDLRPLFEKYGTVVECDVVKNYGFVHMETEDMGRDAIQNLD 61
Query: 169 GMMVDGKPMKVQISTSRVRQRPGVDEVVIG 198
G +V+GK +KV+ + +R ++ +G
Sbjct: 62 GYVVNGKAIKVEAARNRRAPNSNTTKIFVG 91
>gi|406507553|gb|AFS34620.1| lark, partial [Clunio marinus]
Length = 285
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/171 (57%), Positives = 129/171 (75%), Gaps = 8/171 (4%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
MPG S FK+FIGN++ T +RPLFEKYGKVVE D+VKNYGFVH +N+ + A+
Sbjct: 1 MPGAQS---FKLFIGNLDENTKTNDVRPLFEKYGKVVEFDIVKNYGFVHFQNESDAXDAV 57
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
LNG ++N +K+E A SR+ PN+ TTK+FVGNL++ TR EVRELF YGTV+ECD+
Sbjct: 58 ANLNGYVINGNAIKVENAKSRRAPNSNTTKIFVGNLTEKTRTAEVRELFEKYGTVLECDV 117
Query: 147 V--RNYGFVHIDSPD---INKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
V RNYGFVH++ D +N I+ELNGM++DG+ +KVQ+STSRVRQRPG+
Sbjct: 118 VXCRNYGFVHLEVADNVNVNDAIRELNGMVIDGQALKVQVSTSRVRQRPGM 168
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELN 168
P + K+F+GNL +NT+ +VR LF YG VVE DIV+NYGFVH + D + LN
Sbjct: 2 PGAQSFKLFIGNLDENTKTNDVRPLFEKYGKVVEFDIVKNYGFVHFQNESDAXDAVANLN 61
Query: 169 GMMVDGKPMKVQISTSRVRQRPGVDEVVIG 198
G +++G +KV+ + SR ++ +G
Sbjct: 62 GYVINGNAIKVENAKSRRAPNSNTTKIFVG 91
>gi|312378041|gb|EFR24719.1| hypothetical protein AND_10495 [Anopheles darlingi]
Length = 311
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/170 (57%), Positives = 125/170 (73%), Gaps = 12/170 (7%)
Query: 25 RNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRT 84
R++PG GTFK+FIGNV+ T +R LFE+YG V CDVVKN+GFVHME + E R
Sbjct: 41 RDLPG--PAGTFKLFIGNVDEKTPPSELRQLFEQYGVVSSCDVVKNFGFVHMEKEAEARQ 98
Query: 85 AIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
AI LNG +V +P+K+EAA SR+ PN T K+FVGNL+D TRAP++R+LF +
Sbjct: 99 AIDNLNGYMVGGQPIKVEAARSRRAPNANTAKIFVGNLTDKTRAPQIRDLFEKF------ 152
Query: 145 DIVRNYGFVHID--SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
VRNYGFVH+D D+N+ I+ELNGM+VDG+PMKVQ+STSRVR +PG+
Sbjct: 153 --VRNYGFVHLDPTGGDVNEAIRELNGMIVDGQPMKVQVSTSRVRPKPGM 200
>gi|345493962|ref|XP_003427189.1| PREDICTED: RNA-binding protein lark-like [Nasonia vitripennis]
Length = 382
Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/120 (73%), Positives = 106/120 (88%), Gaps = 1/120 (0%)
Query: 76 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
MEN+E GR AI+ LNGQ+V+ +P+K EAA SRKGPNTPTTK+FVGNL+DNT+AP+VRELF
Sbjct: 1 MENEESGRNAIQNLNGQLVHGQPIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVRELF 60
Query: 136 VPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
YGTVVECDIVRNYGFVH+++ D+N IKELNG +VDG+PMKVQISTSRVRQRPG+ +
Sbjct: 61 AKYGTVVECDIVRNYGFVHLEATGDVNDAIKELNGQIVDGQPMKVQISTSRVRQRPGMGD 120
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 54/73 (73%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T KIF+GN+ T +R LF KYG VVECD+V+NYGFVH+E + AIKELNGQIV
Sbjct: 39 TTKIFVGNLTDNTKAPQVRELFAKYGTVVECDIVRNYGFVHLEATGDVNDAIKELNGQIV 98
Query: 95 NEKPLKIEAATSR 107
+ +P+K++ +TSR
Sbjct: 99 DGQPMKVQISTSR 111
>gi|389611835|dbj|BAM19479.1| RNA binding motif protein 4,lark [Papilio xuthus]
Length = 296
Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 104/120 (86%), Gaps = 1/120 (0%)
Query: 76 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
MEN++ GR AI+ LNG++V+ + + IEAA SRK P+TPTTK+FVGNL+D TRAPEVRELF
Sbjct: 1 MENEQVGREAIQNLNGELVHGQAIXIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELF 60
Query: 136 VPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
+GTVVECDIVRNYGFVH+D+ D+N+ I ELNGMMVDG+PMKVQ+STSRVRQRPG+ +
Sbjct: 61 QKFGTVVECDIVRNYGFVHLDATGDVNEAIXELNGMMVDGQPMKVQLSTSRVRQRPGMGD 120
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 54/76 (71%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG 91
S T KIF+GN+ T +R LF+K+G VVECD+V+NYGFVH++ + AI ELNG
Sbjct: 36 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNEAIXELNG 95
Query: 92 QIVNEKPLKIEAATSR 107
+V+ +P+K++ +TSR
Sbjct: 96 MMVDGQPMKVQLSTSR 111
>gi|62511030|sp|Q6IQ97.1|RBM41_DANRE RecName: Full=RNA-binding protein 4.1; AltName: Full=RNA-binding
motif protein 4.1
gi|47940417|gb|AAH71513.1| RNA binding motif protein 4.1 [Danio rerio]
gi|160774000|gb|AAI55176.1| RNA binding motif protein 4.1 [Danio rerio]
Length = 419
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 103/159 (64%), Gaps = 4/159 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+GN++P T+ E IR LF +YGK+ ECD+VKN+GFVHM++ E AI+ L+ ++N
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +E + KG +TK+ VGN+S + E+R F YG VVECDIV++Y FVH++
Sbjct: 63 MAMNVEMS---KGKPKTSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHME 119
Query: 157 S-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
D + I L+ GK M V++STSR+R PG+ E
Sbjct: 120 RVEDAMEAISGLDNTAFQGKLMSVKLSTSRLRTAPGMGE 158
>gi|41054387|ref|NP_955999.1| RNA-binding protein 4.1 [Danio rerio]
gi|28277979|gb|AAH46057.1| RNA binding motif protein 4.1 [Danio rerio]
Length = 419
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 102/159 (64%), Gaps = 4/159 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+GN++P T+ E IR LF +YGK+ ECD+VKN+GFVHM++ E AI+ L+ ++N
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +E + KG +TK VGN+S + E+R F YG VVECDIV++Y FVH++
Sbjct: 63 MAMNVEMS---KGKPKTSTKPHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHME 119
Query: 157 S-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
D + I L+ GK M V++STSR+R PG+ E
Sbjct: 120 RVEDAMEAISGLDNTAFQGKLMSVKLSTSRLRTAPGMGE 158
>gi|47209606|emb|CAF93001.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1197
Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats.
Identities = 72/162 (44%), Positives = 100/162 (61%), Gaps = 4/162 (2%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG 91
S+ KIFIGN+ + + +R LFEKYGKV ECD+VKNYGFVHM N E AIK LN
Sbjct: 817 SITMVKIFIGNLTCTATPQELRELFEKYGKVTECDIVKNYGFVHMSNMSEAEEAIKNLNQ 876
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYG 151
++ + +E + KG TTK+ V NL + + +R F +G VVECDIV++Y
Sbjct: 877 HQLHGWRMNVELS---KGRPKSTTKLHVSNLGEGVTSDVLRARFEEFGPVVECDIVKDYA 933
Query: 152 FVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
FVH++ D + I++++ GK M VQ+STSR+R PG+
Sbjct: 934 FVHMERMEDAMEAIEKMDNTAFKGKLMSVQLSTSRLRTAPGM 975
>gi|348544591|ref|XP_003459764.1| PREDICTED: RNA-binding protein 4.1-like [Oreochromis niloticus]
Length = 419
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 106/159 (66%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIFIGN++P T+ + +R LF +YGK+ EC +VKN+GFVHM++ E AI+ L+ +N
Sbjct: 3 KIFIGNLSPDTTSDELRSLFSQYGKIAECSIVKNFGFVHMDDKTEAEEAIRNLHQYELNG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+P+ +E + +G + +TK+ VGN++ + E+R F +GTV+ECDIV+NY FVH++
Sbjct: 63 QPMNVELS---RGKSRGSTKLHVGNIACTNQ--ELRAKFEEFGTVLECDIVKNYAFVHME 117
Query: 157 S-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
D + I +L+ GK M V++STSR+R PG+ +
Sbjct: 118 RMEDAMEAINQLDNTAFKGKLMSVKLSTSRLRTAPGMGD 156
>gi|432888898|ref|XP_004075077.1| PREDICTED: RNA-binding protein 4.1-like [Oryzias latipes]
Length = 417
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 104/159 (65%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIFIGN+ P T+ E +R LF +YGK+ EC +VKN+GFVHM++ E AI+ L+ +N
Sbjct: 3 KIFIGNLAPETTTEELRSLFSQYGKIAECSIVKNFGFVHMDSKAEAEEAIRNLHQYELNA 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+P+ +E + +G + +TK+ VGN++ + E+R F +G V+ECDIV+NY FVH++
Sbjct: 63 QPMNVELS---RGKSRGSTKLHVGNIACTNQ--ELRAKFEEFGAVLECDIVKNYAFVHME 117
Query: 157 S-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
D + I +L+ GK M V++STSR+R PG+ +
Sbjct: 118 RMEDAMEAINKLDNTAFKGKLMSVKLSTSRLRTAPGMGD 156
>gi|45361253|ref|NP_989204.1| RNA binding motif protein 4B [Xenopus (Silurana) tropicalis]
gi|38648979|gb|AAH63354.1| RNA binding motif protein 4B [Xenopus (Silurana) tropicalis]
gi|89272511|emb|CAJ82586.1| RNA binding motif protein 4 [ [Xenopus (Silurana) tropicalis]
Length = 338
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 101/159 (63%), Gaps = 4/159 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN+ P + ++ LFE++G+V ECD++KNYGFVHME+ + A+ LN ++
Sbjct: 3 KLFVGNLPPEATQSELKSLFEQFGRVTECDIIKNYGFVHMEDRKAADEAVHNLNHYKLHS 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
P+ +E + +G +TK+ V NLS + + E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VPINVEHS---RGKPKASTKLHVSNLSTSCTSEELRAKFEEYGAVLECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
S + IK L+ GK M VQ+STSR+R PG+ E
Sbjct: 120 RSAEALDAIKNLDNTEFKGKRMHVQLSTSRLRVTPGMGE 158
>gi|348544593|ref|XP_003459765.1| PREDICTED: RNA-binding protein 4.1-like [Oreochromis niloticus]
Length = 380
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 96/157 (61%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIFIGN+ + E +R LFEKYGKV ECD+VKNYGFVHM N E AIK L+ ++
Sbjct: 3 KIFIGNLACNATAEELRELFEKYGKVTECDIVKNYGFVHMSNMSEAEEAIKNLHQHQLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +E + KG TTK+ V NL + + +R F +G VVECDIV++Y FVH++
Sbjct: 63 WRMNVEMS---KGRPKSTTKLHVSNLGEGVTSEVLRARFEEFGPVVECDIVKDYAFVHME 119
Query: 157 S-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
D + I L+ GK M VQ+STSR+R PG+
Sbjct: 120 RVEDAMEAISNLDNTAFKGKLMSVQLSTSRLRTAPGM 156
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T K+ + N+ G + E++R FE++G VVECD+VK+Y FVHME E+ AI L+
Sbjct: 77 TTKLHVSNLGEGVTSEVLRARFEEFGPVVECDIVKDYAFVHMERVEDAMEAISNLDNTAF 136
Query: 95 NEKPLKIEAATSR 107
K + ++ +TSR
Sbjct: 137 KGKLMSVQLSTSR 149
>gi|291190904|ref|NP_001167419.1| RNA-binding protein 4 [Salmo salar]
gi|223648750|gb|ACN11133.1| RNA-binding protein 4 [Salmo salar]
Length = 316
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 99/147 (67%), Gaps = 4/147 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+GNVN T+ +R LFEKYG+V +CD++KNYGFVHM +EE + A+ EL+ +N
Sbjct: 3 KIFVGNVNSSTTESELRTLFEKYGQVSDCDILKNYGFVHMNEEEEAQKAVAELHKHELNG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +E AT++ TK++VGN+ + T A ++RELF P+G VVECDIV+N+ FVH+
Sbjct: 63 ARITVEFATTKV---RNATKIYVGNVPEGTTAAKIRELFQPFGKVVECDIVKNFAFVHMQ 119
Query: 157 SP-DINKCIKELNGMMVDGKPMKVQIS 182
+ + I +LN ++G+ + V IS
Sbjct: 120 RENEAYEAISKLNHSKMEGQKIFVSIS 146
>gi|363746234|ref|XP_003643577.1| PREDICTED: RNA-binding protein 4B-like, partial [Gallus gallus]
Length = 242
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 102/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VCINVEAS---KNKSKASTKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M+VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMRVQLSTSRLRTAPGM 156
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG 91
S + K+ +GN++P + +R FE+YG V+ECD+VK+Y FVHME E+ AI+ L+
Sbjct: 74 SKASTKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDN 133
Query: 92 QIVNEKPLKIEAATSR 107
K ++++ +TSR
Sbjct: 134 TEFQGKRMRVQLSTSR 149
>gi|432091077|gb|ELK24289.1| RNA-binding protein 4 [Myotis davidii]
Length = 382
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRTLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG 91
S + K+ +GN++P + + +R FE+YG V+ECD+VK+Y FVHME E+ AI+ L+
Sbjct: 74 SKASTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDN 133
Query: 92 QIVNEKPLKIEAATSR 107
K + ++ +TSR
Sbjct: 134 TEFQGKRMHVQLSTSR 149
>gi|348565067|ref|XP_003468325.1| PREDICTED: RNA-binding protein 4-like [Cavia porcellus]
Length = 365
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|410906769|ref|XP_003966864.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 379
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 98/157 (62%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIFIGN+ + + +R LFEKYGKV ECD+VKNYGFVHM N E AIK LN ++
Sbjct: 3 KIFIGNLTCTATPQELRELFEKYGKVTECDIVKNYGFVHMSNVSEAEEAIKNLNQHQLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +E + KG TTK+ V NL + + +R F +G VVECDIV++Y FVH++
Sbjct: 63 WRMNVELS---KGRPKSTTKLHVSNLGEGVTSDVLRARFQEFGPVVECDIVKDYAFVHME 119
Query: 157 S-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
D + I++++ GK M VQ+STSR+R PG+
Sbjct: 120 RMEDAMEAIEKMDNTAFKGKLMSVQLSTSRLRTAPGM 156
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 48/73 (65%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T K+ + N+ G + +++R F+++G VVECD+VK+Y FVHME E+ AI++++
Sbjct: 77 TTKLHVSNLGEGVTSDVLRARFQEFGPVVECDIVKDYAFVHMERMEDAMEAIEKMDNTAF 136
Query: 95 NEKPLKIEAATSR 107
K + ++ +TSR
Sbjct: 137 KGKLMSVQLSTSR 149
>gi|395851691|ref|XP_003798386.1| PREDICTED: RNA-binding protein 4 [Otolemur garnettii]
Length = 365
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
>gi|86262144|ref|NP_033058.2| RNA-binding protein 4 [Mus musculus]
gi|62511057|sp|Q8C7Q4.1|RBM4_MOUSE RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
Short=mLark; AltName: Full=RNA-binding motif protein 4;
AltName: Full=RNA-binding motif protein 4a
gi|26340398|dbj|BAC33862.1| unnamed protein product [Mus musculus]
gi|148701113|gb|EDL33060.1| mCG8382, isoform CRA_a [Mus musculus]
gi|219520483|gb|AAI44950.1| RNA binding motif protein 4 [Mus musculus]
Length = 361
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|354496140|ref|XP_003510185.1| PREDICTED: RNA-binding protein 4 [Cricetulus griseus]
gi|344250268|gb|EGW06372.1| RNA-binding protein 4 [Cricetulus griseus]
Length = 360
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|344295811|ref|XP_003419604.1| PREDICTED: RNA-binding protein 4B-like [Loxodonta africana]
Length = 359
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|296218877|ref|XP_002755613.1| PREDICTED: RNA-binding protein 4 [Callithrix jacchus]
gi|403301167|ref|XP_003941270.1| PREDICTED: RNA-binding protein 4 [Saimiri boliviensis boliviensis]
Length = 364
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
>gi|93277122|ref|NP_002887.2| RNA-binding protein 4 isoform 1 [Homo sapiens]
gi|350539417|ref|NP_001233570.1| RNA-binding protein 4 [Pan troglodytes]
gi|332249626|ref|XP_003273959.1| PREDICTED: RNA-binding protein 4 isoform 2 [Nomascus leucogenys]
gi|397517069|ref|XP_003828742.1| PREDICTED: RNA-binding protein 4 isoform 1 [Pan paniscus]
gi|402892712|ref|XP_003909553.1| PREDICTED: RNA-binding protein 4 [Papio anubis]
gi|426369345|ref|XP_004051653.1| PREDICTED: RNA-binding protein 4 isoform 1 [Gorilla gorilla
gorilla]
gi|62511089|sp|Q9BWF3.1|RBM4_HUMAN RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
Short=hLark; AltName: Full=RNA-binding motif protein 4;
AltName: Full=RNA-binding motif protein 4a
gi|75077302|sp|Q4R979.1|RBM4_MACFA RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding
motif protein 4
gi|12653083|gb|AAH00307.1| RNA binding motif protein 4 [Homo sapiens]
gi|21618467|gb|AAH32735.1| RNA binding motif protein 4 [Homo sapiens]
gi|67967719|dbj|BAE00342.1| unnamed protein product [Macaca fascicularis]
gi|167774193|gb|ABZ92531.1| RNA binding motif protein 4 [synthetic construct]
gi|193783581|dbj|BAG53492.1| unnamed protein product [Homo sapiens]
gi|261859218|dbj|BAI46131.1| RNA binding motif protein 14 [synthetic construct]
gi|343958742|dbj|BAK63226.1| RNA binding motif protein 4 [Pan troglodytes]
gi|355566266|gb|EHH22645.1| RNA-binding motif protein 4 [Macaca mulatta]
gi|380784029|gb|AFE63890.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|383409025|gb|AFH27726.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|384942564|gb|AFI34887.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|410222926|gb|JAA08682.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410222932|gb|JAA08685.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410222940|gb|JAA08689.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254448|gb|JAA15191.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254452|gb|JAA15193.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295006|gb|JAA26103.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352741|gb|JAA42974.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352747|gb|JAA42977.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352751|gb|JAA42979.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352753|gb|JAA42980.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 364
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
>gi|73982920|ref|XP_852303.1| PREDICTED: RNA-binding protein 4 isoform 1 [Canis lupus familiaris]
gi|301784859|ref|XP_002927840.1| PREDICTED: RNA-binding protein 4-like isoform 1 [Ailuropoda
melanoleuca]
gi|301784861|ref|XP_002927841.1| PREDICTED: RNA-binding protein 4-like isoform 2 [Ailuropoda
melanoleuca]
gi|410974610|ref|XP_003993736.1| PREDICTED: RNA-binding protein 4 [Felis catus]
gi|281346284|gb|EFB21868.1| hypothetical protein PANDA_017684 [Ailuropoda melanoleuca]
Length = 365
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
>gi|291385477|ref|XP_002709280.1| PREDICTED: RNA binding motif protein 4B-like [Oryctolagus
cuniculus]
Length = 365
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
>gi|126338772|ref|XP_001364800.1| PREDICTED: RNA-binding protein 4B-like [Monodelphis domestica]
Length = 365
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRALFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISSACTNLELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++ + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISSACTNLELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|57099639|ref|XP_533216.1| PREDICTED: RNA-binding protein 4B isoform 1 [Canis lupus
familiaris]
Length = 359
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|431910217|gb|ELK13290.1| RNA-binding protein 4 [Pteropus alecto]
Length = 365
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
>gi|149725614|ref|XP_001496788.1| PREDICTED: RNA-binding protein 4 isoform 1 [Equus caballus]
gi|338712238|ref|XP_003362679.1| PREDICTED: RNA-binding protein 4 isoform 2 [Equus caballus]
Length = 361
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
>gi|126723790|ref|NP_001075548.1| RNA-binding protein 4 [Oryctolagus cuniculus]
gi|62511088|sp|Q9BDY9.1|RBM4_RABIT RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
AltName: Full=RNA-binding motif protein 4
gi|13182931|gb|AAK14991.1|AF233063_1 RNA-binding protein lark [Oryctolagus cuniculus]
Length = 359
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|301784857|ref|XP_002927839.1| PREDICTED: RNA-binding protein 4B-like [Ailuropoda melanoleuca]
gi|281346283|gb|EFB21867.1| hypothetical protein PANDA_017683 [Ailuropoda melanoleuca]
Length = 359
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|147901982|ref|NP_001087983.1| RNA binding motif protein 4B [Xenopus laevis]
gi|52139141|gb|AAH82645.1| LOC494668 protein [Xenopus laevis]
Length = 336
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 102/159 (64%), Gaps = 4/159 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN+ P + ++ LFE++G+V ECD++KNYGFVHM++ + A++ LN ++
Sbjct: 3 KLFVGNLPPEATQPELKSLFEQFGRVTECDIIKNYGFVHMDDKKAADEAVRNLNHYKLHN 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +E SR PN +TK+ V NLS + + E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VSINVE--HSRGKPNA-STKLHVSNLSSSCTSEELRAKFEEYGAVLECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
S + IK L+ GK M VQ+STSR+R PG+ E
Sbjct: 120 ISAEALDAIKNLDNTEFKGKRMHVQLSTSRLRVTPGMGE 158
>gi|410974612|ref|XP_003993737.1| PREDICTED: RNA-binding protein 4B [Felis catus]
Length = 359
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|34495359|gb|AAQ73500.1| zinc responsive protein ZD7 [Rattus norvegicus]
Length = 357
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|120577684|gb|AAI30257.1| RNA binding motif protein 4 [Mus musculus]
Length = 361
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|55926188|ref|NP_001007015.2| RNA-binding protein 4B [Rattus norvegicus]
gi|62510948|sp|Q64LC9.2|RBM4B_RAT RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30;
AltName: Full=Zinc-responsive protein ZD7
gi|55562771|gb|AAH86416.1| RNA binding motif protein 4B [Rattus norvegicus]
gi|149061999|gb|EDM12422.1| rCG48244, isoform CRA_a [Rattus norvegicus]
gi|149062000|gb|EDM12423.1| rCG48244, isoform CRA_a [Rattus norvegicus]
Length = 357
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|27754120|ref|NP_079993.2| RNA-binding protein 4B [Mus musculus]
gi|62511125|sp|Q8VE92.1|RBM4B_MOUSE RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|18044496|gb|AAH19488.1| RNA binding motif protein 4B [Mus musculus]
gi|148701119|gb|EDL33066.1| mCG8380, isoform CRA_a [Mus musculus]
gi|148701120|gb|EDL33067.1| mCG8380, isoform CRA_a [Mus musculus]
Length = 357
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|431910216|gb|ELK13289.1| RNA-binding protein 4B [Pteropus alecto]
Length = 359
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|449279129|gb|EMC86791.1| RNA-binding protein 4, partial [Columba livia]
Length = 250
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 102/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VCINVEAS---KNKSKASTKLHVGNISPACTNMELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M+VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMRVQLSTSRLRTAPGM 156
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG 91
S + K+ +GN++P + +R FE+YG V+ECD+VK+Y FVHME E+ AI+ L+
Sbjct: 74 SKASTKLHVGNISPACTNMELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDN 133
Query: 92 QIVNEKPLKIEAATSR 107
K ++++ +TSR
Sbjct: 134 TEFQGKRMRVQLSTSR 149
>gi|13899354|ref|NP_113680.1| RNA-binding protein 4B [Homo sapiens]
gi|109105261|ref|XP_001109453.1| PREDICTED: RNA-binding protein 4B-like [Macaca mulatta]
gi|114638751|ref|XP_508578.2| PREDICTED: RNA-binding protein 4B isoform 2 [Pan troglodytes]
gi|297688065|ref|XP_002821512.1| PREDICTED: RNA-binding protein 4B [Pongo abelii]
gi|397517079|ref|XP_003828747.1| PREDICTED: RNA-binding protein 4B [Pan paniscus]
gi|402892714|ref|XP_003909554.1| PREDICTED: RNA-binding protein 4B [Papio anubis]
gi|426369353|ref|XP_004051657.1| PREDICTED: RNA-binding protein 4B isoform 1 [Gorilla gorilla
gorilla]
gi|62511129|sp|Q9BQ04.1|RBM4B_HUMAN RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|13097558|gb|AAH03503.1| RNA binding motif protein 4B [Homo sapiens]
gi|13436323|gb|AAH04951.1| RNA binding motif protein 4B [Homo sapiens]
gi|119594964|gb|EAW74558.1| RNA binding motif protein 4B [Homo sapiens]
gi|193787792|dbj|BAG52995.1| unnamed protein product [Homo sapiens]
gi|208967358|dbj|BAG73693.1| RNA binding motif protein 4B [synthetic construct]
gi|325464201|gb|ADZ15871.1| RNA binding motif protein 4B [synthetic construct]
gi|355566265|gb|EHH22644.1| RNA-binding motif protein 4B [Macaca mulatta]
gi|355751922|gb|EHH56042.1| RNA-binding motif protein 4B [Macaca fascicularis]
Length = 359
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|116004239|ref|NP_001070478.1| RNA-binding protein 4 [Bos taurus]
gi|91207336|sp|Q3MHX3.1|RBM4_BOVIN RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding
motif protein 4; AltName: Full=RNA-binding motif protein
4a
gi|75775098|gb|AAI04571.1| RNA binding motif protein 4 [Bos taurus]
gi|146231708|gb|ABQ12929.1| RNA binding motif protein 4 [Bos taurus]
gi|296471486|tpg|DAA13601.1| TPA: RNA-binding protein 4 [Bos taurus]
gi|440899389|gb|ELR50692.1| RNA-binding protein 4 [Bos grunniens mutus]
Length = 362
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
>gi|332249630|ref|XP_003273961.1| PREDICTED: RNA-binding protein 4B isoform 1 [Nomascus leucogenys]
Length = 359
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|158259071|dbj|BAF85494.1| unnamed protein product [Homo sapiens]
Length = 364
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPACTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
>gi|426252104|ref|XP_004019758.1| PREDICTED: RNA-binding protein 4B isoform 1 [Ovis aries]
Length = 365
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|282165770|ref|NP_001163955.1| RNA binding motif protein 4 [Rattus norvegicus]
gi|149061994|gb|EDM12417.1| rCG48334, isoform CRA_b [Rattus norvegicus]
Length = 365
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG 91
S + K+ +GN++P + + +R FE+YG V+ECD+VK+Y FVHME E+ AI+ L+
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDN 133
Query: 92 QIVNEKPLKIEAATSR 107
K + ++ +TSR
Sbjct: 134 TEFQGKRMHVQLSTSR 149
>gi|348565071|ref|XP_003468327.1| PREDICTED: RNA-binding protein 4B-like [Cavia porcellus]
Length = 358
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|224164480|ref|XP_002196784.1| PREDICTED: RNA-binding protein 4B-like, partial [Taeniopygia
guttata]
Length = 333
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 102/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VCINVEAS---KNKSKASTKLHVGNISPACTNLELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M+VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMRVQLSTSRLRTVPGM 156
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG 91
S + K+ +GN++P + +R FE+YG V+ECD+VK+Y FVHME E+ AI+ L+
Sbjct: 74 SKASTKLHVGNISPACTNLELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDN 133
Query: 92 QIVNEKPLKIEAATSR 107
K ++++ +TSR
Sbjct: 134 TEFQGKRMRVQLSTSR 149
>gi|351710884|gb|EHB13803.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 318
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|403301169|ref|XP_003941271.1| PREDICTED: RNA-binding protein 4B [Saimiri boliviensis boliviensis]
Length = 359
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRTKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRTKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|383422057|gb|AFH34242.1| RNA-binding protein 4B [Macaca mulatta]
Length = 359
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
>gi|444510189|gb|ELV09524.1| RNA-binding protein 4B [Tupaia chinensis]
Length = 357
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|432091076|gb|ELK24288.1| RNA-binding protein 4B [Myotis davidii]
Length = 357
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|178056236|ref|NP_001116660.1| RNA-binding protein 4B [Sus scrofa]
gi|122131878|sp|Q06AT9.1|RBM4B_PIG RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|115394774|gb|ABI97181.1| RBM30 [Sus scrofa]
Length = 359
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|114052178|ref|NP_001039393.1| RNA-binding protein 4B [Bos taurus]
gi|86438058|gb|AAI12498.1| RNA binding motif protein 4B [Bos taurus]
gi|296471585|tpg|DAA13700.1| TPA: RNA binding motif protein 4B [Bos taurus]
Length = 359
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|380817026|gb|AFE80387.1| RNA-binding protein 4B [Macaca mulatta]
gi|384949730|gb|AFI38470.1| RNA-binding protein 4B [Macaca mulatta]
gi|410254450|gb|JAA15192.1| RNA binding motif protein 4B [Pan troglodytes]
gi|410295008|gb|JAA26104.1| RNA binding motif protein 4B [Pan troglodytes]
gi|410352743|gb|JAA42975.1| RNA binding motif protein 4B [Pan troglodytes]
Length = 359
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
>gi|410222930|gb|JAA08684.1| RNA binding motif protein 4B [Pan troglodytes]
Length = 359
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
>gi|354496142|ref|XP_003510186.1| PREDICTED: RNA-binding protein 4B [Cricetulus griseus]
gi|344250269|gb|EGW06373.1| RNA-binding protein 4B [Cricetulus griseus]
Length = 357
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|149725616|ref|XP_001496839.1| PREDICTED: RNA-binding protein 4B-like [Equus caballus]
Length = 359
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|395851687|ref|XP_003798384.1| PREDICTED: RNA-binding protein 4B [Otolemur garnettii]
Length = 359
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|149491652|ref|XP_001512914.1| PREDICTED: RNA-binding protein 4B-like isoform 1 [Ornithorhynchus
anatinus]
Length = 365
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNMELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNMELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|395544458|ref|XP_003774127.1| PREDICTED: RNA-binding protein 4 [Sarcophilus harrisii]
Length = 364
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>gi|45387723|ref|NP_991217.1| uncharacterized protein LOC402952 [Danio rerio]
gi|41351185|gb|AAH65633.1| Zgc:77262 [Danio rerio]
Length = 331
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 96/149 (64%), Gaps = 4/149 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+GNV T+ + +R LFEKYG V +CD++KNYGFVHM+ +E + A+ L+ VN
Sbjct: 3 KIFVGNVASATTEDELRALFEKYGAVSDCDILKNYGFVHMDEEEAAQKAVSALHKHEVNG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +E AT++ TK++VGN+ + A +++ELF P+G VVECDIV+NY FVH+
Sbjct: 63 SRITVEYATTKV---RNATKIYVGNVPEGVAAAKIKELFQPFGKVVECDIVKNYAFVHMQ 119
Query: 157 SP-DINKCIKELNGMMVDGKPMKVQISTS 184
+ I +LN VDG+ + V +S S
Sbjct: 120 RENEALDAIAKLNHSKVDGQKIFVSLSRS 148
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KI++GNV G + I+ LF+ +GKVVECD+VKNY FVHM+ + E AI +LN V+
Sbjct: 79 KIYVGNVPEGVAAAKIKELFQPFGKVVECDIVKNYAFVHMQRENEALDAIAKLNHSKVDG 138
Query: 97 KPLKIEAATSRKGPN 111
+ KI + SR P+
Sbjct: 139 Q--KIFVSLSRSNPS 151
>gi|197098970|ref|NP_001126757.1| RNA-binding protein 4 [Pongo abelii]
gi|55732548|emb|CAH92974.1| hypothetical protein [Pongo abelii]
Length = 170
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
>gi|297267337|ref|XP_001109416.2| PREDICTED: RNA-binding protein 4 isoform 5 [Macaca mulatta]
Length = 693
Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 67/159 (42%), Positives = 102/159 (64%), Gaps = 4/159 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 332 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 391
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 392 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 448
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
+ D + I+ L+ GK M VQ+STSR+R PG+ +
Sbjct: 449 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 487
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 44 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 103
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 104 EVKGKRINVELSTKGQKKGP 123
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 5/124 (4%)
Query: 71 YGFVHMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 129
+ FVHM + AI+ L+G ++ + L +E + R T K+FVGN+S +
Sbjct: 5 FAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQ 61
Query: 130 EVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
E+R LF G V+ECD+V++Y FVH++ D I +LNG V GK + V++ST ++
Sbjct: 62 ELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 121
Query: 189 RPGV 192
PG+
Sbjct: 122 GPGL 125
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 104 ATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINK 162
A S G K+F+GNL E+R LF YG V+ECDI++NYGFVHI D
Sbjct: 320 AASSYGALVRMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAED 379
Query: 163 CIKELNGMMVDGKPMKVQISTSRVR 187
I+ L+ + G + V+ S ++ +
Sbjct: 380 AIRNLHHYKLHGVNINVEASKNKSK 404
>gi|426252100|ref|XP_004019756.1| PREDICTED: RNA-binding protein 4 isoform 1 [Ovis aries]
Length = 361
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
>gi|178056229|ref|NP_001116659.1| RNA-binding protein 4 [Sus scrofa]
gi|115394772|gb|ABI97180.1| RBM4 [Sus scrofa]
Length = 365
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGF H+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFAHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
>gi|45360753|ref|NP_989050.1| RNA binding motif protein 14 [Xenopus (Silurana) tropicalis]
gi|38174074|gb|AAH61344.1| RNA binding motif protein 14 [Xenopus (Silurana) tropicalis]
gi|89269922|emb|CAJ81697.1| novel protein containing RNA recognition motifs. (a.k.a. RRM, RBD,
or RNP domain) [Xenopus (Silurana) tropicalis]
Length = 468
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 107/186 (57%), Gaps = 16/186 (8%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
MP + KIF+GNV+ T+ E I LFE+YG VV C V+K Y FVHM EE A+
Sbjct: 1 MPNYDE--RMKIFVGNVDDSTTQEEITELFERYGTVVNCAVMKQYAFVHMRGSEEATKAV 58
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
++LNG+ +N K + +E + R P T K+FVGN+S + E+R++F +G VVECDI
Sbjct: 59 EDLNGRELNGKKMLVELSKPR--PQN-TWKIFVGNVSSSCEVSEIRKMFEEHGRVVECDI 115
Query: 147 VRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQIS----------TSRVRQRPGVDEV 195
V++Y FVH+ + I+ LNG V GK + V++S +S R+RP E
Sbjct: 116 VKDYAFVHMTRESESRAAIEALNGKEVKGKRINVEMSHKVRPVAANGSSHSRRRPDDREA 175
Query: 196 VIGQKS 201
++S
Sbjct: 176 PQSRES 181
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T+KIF+GNV+ V IR +FE++G+VVECD+VK+Y FVHM + E R AI+ LNG+ V
Sbjct: 83 TWKIFVGNVSSSCEVSEIRKMFEEHGRVVECDIVKDYAFVHMTRESESRAAIEALNGKEV 142
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
K + +E + + P D+ AP+ RE +
Sbjct: 143 KGKRINVE-MSHKVRPVAANGSSHSRRRPDDREAPQSRESY 182
>gi|2078531|gb|AAC53171.1| Mlark [Mus musculus]
Length = 367
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 102/159 (64%), Gaps = 4/159 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
+ D + I+ L+ GK M VQ+STSR+R PG+ +
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG 91
S + K+ +GN++P + + +R FE+YG V+ECD+VK+Y FVHME E+ AI+ L+
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDN 133
Query: 92 QIVNEKPLKIEAATSR 107
K + ++ +TSR
Sbjct: 134 TEFQGKRMHVQLSTSR 149
>gi|28175406|gb|AAH45210.1| MGC52864 protein [Xenopus laevis]
Length = 460
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 94/148 (63%), Gaps = 4/148 (2%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
KIF+GNV+ T+ E I LFE+YG VV C V+K Y FVHM EE A+++LNG+ +N
Sbjct: 1 MKIFVGNVDDRTTQEEITELFERYGTVVNCAVMKQYAFVHMRGAEEATKAVEDLNGRELN 60
Query: 96 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI 155
K + +E + R P T K+FVGN+S + E+R++F YG VVECDIV++Y FVH+
Sbjct: 61 GKKMLVELSKPR--PQN-TWKIFVGNVSSSCEGSEIRKIFEEYGRVVECDIVKDYAFVHM 117
Query: 156 D-SPDINKCIKELNGMMVDGKPMKVQIS 182
+ I+ LNG + GK + V++S
Sbjct: 118 TRESEARAAIEALNGKEIKGKRINVEMS 145
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 60/101 (59%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T+KIF+GNV+ IR +FE+YG+VVECD+VK+Y FVHM + E R AI+ LNG+ +
Sbjct: 76 TWKIFVGNVSSSCEGSEIRKIFEEYGRVVECDIVKDYAFVHMTRESEARAAIEALNGKEI 135
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
K + +E + + T +D+ AP+ RE +
Sbjct: 136 KGKRINVEMSHKVQRSGTSNGSSHGRRRTDDREAPQSRESY 176
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 174
K+FVGN+ D T E+ ELF YGTVV C +++ Y FVH+ + + K +++LNG ++G
Sbjct: 2 KIFVGNVDDRTTQEEITELFERYGTVVNCAVMKQYAFVHMRGAEEATKAVEDLNGRELNG 61
Query: 175 KPMKVQISTSR 185
K M V++S R
Sbjct: 62 KKMLVELSKPR 72
>gi|148222587|ref|NP_001079614.1| RNA binding motif protein 14 [Xenopus laevis]
gi|80477004|gb|AAI08787.1| MGC52864 protein [Xenopus laevis]
Length = 467
Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 97/157 (61%), Gaps = 6/157 (3%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
MP + KIF+GNV+ T+ E I LFE+YG VV C V+K Y FVHM EE A+
Sbjct: 1 MPNYDE--RMKIFVGNVDDRTTQEEITELFERYGTVVNCAVMKQYAFVHMRGAEEATKAV 58
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
++LNG+ +N K + +E + R P T K+FVGN+S + E+R++F YG VVECDI
Sbjct: 59 EDLNGRELNGKKMLVELSKPR--PQN-TWKIFVGNVSSSCEGSEIRKIFEEYGRVVECDI 115
Query: 147 VRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQIS 182
V++Y FVH+ + I+ LNG + GK + V++S
Sbjct: 116 VKDYAFVHMTRESEARAAIEALNGKEIKGKRINVEMS 152
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 60/101 (59%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T+KIF+GNV+ IR +FE+YG+VVECD+VK+Y FVHM + E R AI+ LNG+ +
Sbjct: 83 TWKIFVGNVSSSCEGSEIRKIFEEYGRVVECDIVKDYAFVHMTRESEARAAIEALNGKEI 142
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
K + +E + + T +D+ AP+ RE +
Sbjct: 143 KGKRINVEMSHKVQRSGTSNGSSHGRRRTDDREAPQSRESY 183
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 174
K+FVGN+ D T E+ ELF YGTVV C +++ Y FVH+ + + K +++LNG ++G
Sbjct: 9 KIFVGNVDDRTTQEEITELFERYGTVVNCAVMKQYAFVHMRGAEEATKAVEDLNGRELNG 68
Query: 175 KPMKVQISTSR 185
K M V++S R
Sbjct: 69 KKMLVELSKPR 79
>gi|327289700|ref|XP_003229562.1| PREDICTED: RNA-binding protein 4B-like [Anolis carolinensis]
Length = 354
Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 102/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YG+V+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGRVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VCINVEAS---KNKSKASTKLHVGNISTGCTNLELRFKFEEYGPVLECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M+VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMRVQLSTSRLRTAPGM 156
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG 91
S + K+ +GN++ G + +R FE+YG V+ECD+VK+Y FVHME E+ AI+ L+
Sbjct: 74 SKASTKLHVGNISTGCTNLELRFKFEEYGPVLECDIVKDYAFVHMERAEDAVEAIRGLDN 133
Query: 92 QIVNEKPLKIEAATSR 107
K ++++ +TSR
Sbjct: 134 TEFQGKRMRVQLSTSR 149
>gi|2078529|gb|AAC51293.1| Hlark [Homo sapiens]
Length = 366
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 102/159 (64%), Gaps = 4/159 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
+ D + I+ L+ GK M VQ+STSR+R PG+ +
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158
>gi|47209605|emb|CAF93000.1| unnamed protein product [Tetraodon nigroviridis]
Length = 391
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 6/157 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIFIGN+ T+ + IR LF +YGK+ EC +VKN+GFVHM++ E AI+ L+ +N
Sbjct: 3 KIFIGNLASETTSDEIRSLFSQYGKISECTIVKNFGFVHMDDKAEADEAIRNLHQYELNG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+P+ +E + +G + +TK+ VGN++ + E+R F +G VVECDIV+NY FVH++
Sbjct: 63 QPMNVELS---RGKSRGSTKLHVGNIACTNQ--ELRAKFEEFGAVVECDIVKNYAFVHME 117
Query: 157 S-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
D I +L+ GK M V++STSR+R PG+
Sbjct: 118 RMEDAMDAINQLDNTAFKGKLMSVKLSTSRLRTAPGM 154
>gi|45595611|gb|AAH67187.1| Rbm4.2 protein [Danio rerio]
Length = 384
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 4/159 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIFIGN++P ++ + +R LF ++G V ECDV+KNYGFVHM++ +E AI++L+ +
Sbjct: 3 KIFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFVHMDSKKEAEAAIRKLHHYELKG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ + +E + KG +TK+ V N+S E+R F YG VVECDIV++Y FVH++
Sbjct: 63 QAINVELS---KGKPRGSTKLHVSNISSGCTNQELRAKFEEYGPVVECDIVKDYAFVHME 119
Query: 157 S-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
D + I L GK +KVQ+STSR+R PG+ +
Sbjct: 120 RMDDAMEAISGLENTTFQGKLIKVQLSTSRLRTAPGMGD 158
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQI 93
G+ K+ + N++ G + + +R FE+YG VVECD+VK+Y FVHME ++ AI L
Sbjct: 76 GSTKLHVSNISSGCTNQELRAKFEEYGPVVECDIVKDYAFVHMERMDDAMEAISGLENTT 135
Query: 94 VNEKPLKIEAATSR 107
K +K++ +TSR
Sbjct: 136 FQGKLIKVQLSTSR 149
>gi|41054431|ref|NP_955971.1| RNA binding motif protein 4 like [Danio rerio]
gi|27881945|gb|AAH44503.1| RNA binding motif protein 4.2 [Danio rerio]
gi|157423277|gb|AAI53458.1| Rbm4.2 protein [Danio rerio]
gi|182890716|gb|AAI65179.1| Rbm4.2 protein [Danio rerio]
Length = 385
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 4/159 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIFIGN++P ++ + +R LF ++G V ECDV+KNYGFVHM++ +E AI++L+ +
Sbjct: 3 KIFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFVHMDSKKEAEAAIRKLHHYELKG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ + +E + KG +TK+ V N+S E+R F YG VVECDIV++Y FVH++
Sbjct: 63 QAINVELS---KGKPRGSTKLHVSNISSGCTNQELRAKFEEYGPVVECDIVKDYAFVHME 119
Query: 157 S-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
D + I L GK +KVQ+STSR+R PG+ +
Sbjct: 120 RMDDAMEAISGLENTTFQGKLIKVQLSTSRLRTAPGMGD 158
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQI 93
G+ K+ + N++ G + + +R FE+YG VVECD+VK+Y FVHME ++ AI L
Sbjct: 76 GSTKLHVSNISSGCTNQELRAKFEEYGPVVECDIVKDYAFVHMERMDDAMEAISGLENTT 135
Query: 94 VNEKPLKIEAATSR 107
K +K++ +TSR
Sbjct: 136 FQGKLIKVQLSTSR 149
>gi|410906771|ref|XP_003966865.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 416
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 101/157 (64%), Gaps = 6/157 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIFIGN+ T+ + IR LF +YGK+ EC +VKN+GFVHM++ E AI+ L+ +N
Sbjct: 3 KIFIGNLASETTSDEIRSLFSQYGKIAECTIVKNFGFVHMDDKAEADEAIRNLHQYELNG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+P+ +E + +G + +TK+ VGN++ + E+R F +G V+ECDIV+NY FVH++
Sbjct: 63 QPMNVELS---RGKSRGSTKLHVGNIACTNQ--ELRAKFEEFGAVLECDIVKNYAFVHME 117
Query: 157 S-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
D I +L+ GK M V++STSR+R PG+
Sbjct: 118 RMEDAMDAINQLDNTAFKGKLMSVKLSTSRLRTAPGM 154
>gi|148235767|ref|NP_001085690.1| MGC80472 protein [Xenopus laevis]
gi|49255990|gb|AAH73203.1| MGC80472 protein [Xenopus laevis]
Length = 336
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 100/162 (61%), Gaps = 4/162 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN+ P + ++ LFE++G+V ECD++KNYGFVHM++ + A+ LN ++
Sbjct: 3 KLFVGNLPPEATQPELKSLFEQFGRVTECDIIKNYGFVHMDDRKAADEAVHNLNQYKLHN 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +E + +G +TK+ V NLS + + E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VAINVEHS---RGKPKASTKLHVSNLSSSCTSDELRAKFEEYGAVLECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVI 197
S + IK L GK M VQ+STSR+R PG+ + +
Sbjct: 120 RSAEALDAIKNLENTEFKGKRMHVQLSTSRLRVTPGMGDRTL 161
>gi|226372036|gb|ACO51643.1| RNA-binding protein 4B [Rana catesbeiana]
Length = 328
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 100/159 (62%), Gaps = 4/159 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN+ P + ++ LFE++GKV ECD++ NY FVHME+ + A+ LN ++
Sbjct: 3 KLFVGNLPPAATQTELKSLFEQFGKVSECDIITNYAFVHMEDKKSADEAVNNLNQCKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +E + +G +TK+ V +LS + E+RE F YG V+ECDIV++Y FVH++
Sbjct: 63 VSINVEHS---RGKPRASTKLHVSSLSTDCTGDELREKFEEYGGVLECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
+ + + I+ LN + GK M VQ+STSR+R PG+ E
Sbjct: 120 KAEEALEAIRNLNNLEFKGKKMHVQLSTSRLRVTPGMGE 158
>gi|28302297|gb|AAH46684.1| LOC398498 protein, partial [Xenopus laevis]
Length = 531
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 93/148 (62%), Gaps = 4/148 (2%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
KIF+GN++ TS + LFE+YG V+ C V++ Y FVHM E A++ELNG+ +N
Sbjct: 68 MKIFVGNIDERTSEGEVTALFERYGAVLNCAVMRQYAFVHMRGTREATKAVEELNGRELN 127
Query: 96 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI 155
K + +E + R P T K+FVGN+S + A E+R++F YG V+ECDIV++Y FVH+
Sbjct: 128 GKKMLVELSKPR--PQN-TWKIFVGNVSSSCEAAEIRKIFEEYGRVLECDIVKDYAFVHM 184
Query: 156 D-SPDINKCIKELNGMMVDGKPMKVQIS 182
+ I+ LNG + GK + V++S
Sbjct: 185 TRESEARAAIEALNGKDIKGKRINVEMS 212
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T+KIF+GNV+ IR +FE+YG+V+ECD+VK+Y FVHM + E R AI+ LNG+ +
Sbjct: 143 TWKIFVGNVSSSCEAAEIRKIFEEYGRVLECDIVKDYAFVHMTRESEARAAIEALNGKDI 202
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
K + +E + + D+ AP+ RE +
Sbjct: 203 KGKRINVEMSNKVQRSGGANGGSHSRRRPDDREAPQSRESY 243
>gi|50415109|gb|AAH77356.1| LOC398498 protein [Xenopus laevis]
Length = 471
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 93/148 (62%), Gaps = 4/148 (2%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
KIF+GN++ TS + LFE+YG V+ C V++ Y FVHM E A++ELNG+ +N
Sbjct: 8 MKIFVGNIDERTSEGEVTALFERYGAVLNCAVMRQYAFVHMRGTREATKAVEELNGRELN 67
Query: 96 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI 155
K + +E + R P T K+FVGN+S + A E+R++F YG V+ECDIV++Y FVH+
Sbjct: 68 GKKMLVELSKPR--PQN-TWKIFVGNVSSSCEAAEIRKIFEEYGRVLECDIVKDYAFVHM 124
Query: 156 D-SPDINKCIKELNGMMVDGKPMKVQIS 182
+ I+ LNG + GK + V++S
Sbjct: 125 TRESEARAAIEALNGKDIKGKRINVEMS 152
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T+KIF+GNV+ IR +FE+YG+V+ECD+VK+Y FVHM + E R AI+ LNG+ +
Sbjct: 83 TWKIFVGNVSSSCEAAEIRKIFEEYGRVLECDIVKDYAFVHMTRESEARAAIEALNGKDI 142
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
K + +E + + D+ AP+ RE +
Sbjct: 143 KGKRINVEMSNKVQRSGGANGGSHSRRRPDDREAPQSRESY 183
>gi|301616205|ref|XP_002937556.1| PREDICTED: hypothetical protein LOC100490607 [Xenopus (Silurana)
tropicalis]
Length = 324
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 92/149 (61%), Gaps = 4/149 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+G V+P S + ++ LFE+YG+V ECD++KNY FVHME +++ AI EL+ Q
Sbjct: 3 KIFVGGVSPSASPDELKKLFERYGQVNECDILKNYAFVHMEREQDAHRAISELHKQEFYG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
L +E ATS+ TK++VGN+S +V+ELF +G VVECDIV+NY FVH+
Sbjct: 63 SHLTVEYATSKI---RNATKIYVGNVSSRATTSQVKELFEKFGKVVECDIVKNYAFVHMA 119
Query: 157 SP-DINKCIKELNGMMVDGKPMKVQISTS 184
+ I LN ++ + + V +S S
Sbjct: 120 KEREAMDAILHLNDTPLEDQKIFVTLSKS 148
>gi|339522325|gb|AEJ84327.1| RNA-binding protein 4 [Capra hircus]
Length = 362
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 99/157 (63%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KN+GFVH E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNHGFVHREDKPAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ + A+T++ + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVGASTNK---SKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M Q+S SR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHGQLSPSRLRTAPGM 156
>gi|158254301|gb|AAI54223.1| Zgc:85696 [Danio rerio]
Length = 556
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 92/149 (61%), Gaps = 4/149 (2%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T K+F+GN+ T+ E + +FE YG+VV C V++ + FVH++ + AI+ELNG+
Sbjct: 6 TVKLFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF 65
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R +TKVFVGNLS +++ELF +G V+ECD V+ Y FVH
Sbjct: 66 KGRNLVVEESRGRP---LHSTKVFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVH 122
Query: 155 IDSP-DINKCIKELNGMMVDGKPMKVQIS 182
+++ D + I+ L+G G+P+ V++S
Sbjct: 123 MENKEDALQAIEALHGTSFKGRPLSVELS 151
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN++ + E ++ LF+ +GKV+ECD VK Y FVHMEN E+ AI+ L+G
Sbjct: 84 KVFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKG 143
Query: 97 KPLKIEAATSRKGPNTPTTKV 117
+PL +E + + TPT K+
Sbjct: 144 RPLSVELSKVQPSKQTPTGKI 164
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDI-NKCIKELNGMMV 172
T K+FVGNL+ +T E+ +F YG VV C ++R + FVH+ + I+ELNG
Sbjct: 6 TVKLFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF 65
Query: 173 DGKPMKVQISTSR 185
G+ + V+ S R
Sbjct: 66 KGRNLVVEESRGR 78
>gi|47086421|ref|NP_997973.1| RNA binding motif protein 14 [Danio rerio]
gi|46249892|gb|AAH68361.1| Zgc:85696 [Danio rerio]
gi|68085002|gb|AAH56604.2| Zgc:85696 [Danio rerio]
Length = 556
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 92/149 (61%), Gaps = 4/149 (2%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T K+F+GN+ T+ E + +FE YG+VV C V++ + FVH++ + AI+ELNG+
Sbjct: 6 TVKLFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF 65
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R +TKVFVGNLS +++ELF +G V+ECD V+ Y FVH
Sbjct: 66 KGRNLVVEESRGRP---LHSTKVFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVH 122
Query: 155 IDSP-DINKCIKELNGMMVDGKPMKVQIS 182
+++ D + I+ L+G G+P+ V++S
Sbjct: 123 MENKEDALQAIEALHGTSFKGRPLSVELS 151
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN++ + E ++ LF+ +GKV+ECD VK Y FVHMEN E+ AI+ L+G
Sbjct: 84 KVFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKG 143
Query: 97 KPLKIEAATSRKGPNTPTTKV 117
+PL +E + + TPT K+
Sbjct: 144 RPLSVELSKVQPSKQTPTGKI 164
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDI-NKCIKELNGMMV 172
T K+FVGNL+ +T E+ +F YG VV C ++R + FVH+ + I+ELNG
Sbjct: 6 TVKLFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF 65
Query: 173 DGKPMKVQISTSR 185
G+ + V+ S R
Sbjct: 66 KGRNLVVEESRGR 78
>gi|410929393|ref|XP_003978084.1| PREDICTED: uncharacterized protein LOC101079487 [Takifugu rubripes]
Length = 568
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 92/149 (61%), Gaps = 4/149 (2%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T KIF+GN+ T+ E + +FE YG+VV C V++ + FVH++ + AI+ELNG+
Sbjct: 6 TVKIFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF 65
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R +TKVFVGNLS ++++LF +G V+ECD V+ Y FVH
Sbjct: 66 RGRNLVVEESRGRP---LHSTKVFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFVH 122
Query: 155 IDSP-DINKCIKELNGMMVDGKPMKVQIS 182
+++ D + I+ L+G G+P+ V++S
Sbjct: 123 METKEDALQAIEALHGTSFKGRPLSVELS 151
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN++ + E ++ LF+ +GKV+ECD VK Y FVHME E+ AI+ L+G
Sbjct: 84 KVFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFVHMETKEDALQAIEALHGTSFKG 143
Query: 97 KPLKIEAATSRKGPNTPTTKV 117
+PL +E + + TPT K+
Sbjct: 144 RPLSVELSKVQPSKQTPTGKI 164
>gi|348520155|ref|XP_003447594.1| PREDICTED: hypothetical protein LOC100696008 [Oreochromis
niloticus]
Length = 575
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 92/149 (61%), Gaps = 4/149 (2%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T K+F+GN+ T+ E + +FE YG+VV C V++ + FVH++ + AI+ELNG+
Sbjct: 6 TVKLFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF 65
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R +TKVFVGNLS ++++LF +G V+ECD V+ Y FVH
Sbjct: 66 RGRNLVVEESRGRP---LHSTKVFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFVH 122
Query: 155 IDSP-DINKCIKELNGMMVDGKPMKVQIS 182
+++ D + I+ L+G G+P+ V++S
Sbjct: 123 MENKEDALQAIEALHGTSFKGRPLSVELS 151
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN++ + E ++ LF+ +GKV+ECD VK Y FVHMEN E+ AI+ L+G
Sbjct: 84 KVFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKG 143
Query: 97 KPLKIEAATSRKGPNTPTTKV 117
+PL +E + + PT K+
Sbjct: 144 RPLSVELSKVQPSKQAPTGKI 164
>gi|392344877|ref|XP_003749100.1| PREDICTED: RNA-binding protein 14-like [Rattus norvegicus]
Length = 404
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 89/142 (62%), Gaps = 4/142 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPM 177
+ D + I+ L+ G+ +
Sbjct: 120 RAEDAVEAIRGLDNTEFQGESL 141
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELN 90
S + K+ +GN++P + + +R FE+YG V+ECD+VK+Y FVHME E+ AI+ L+
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
>gi|432920249|ref|XP_004079910.1| PREDICTED: uncharacterized protein LOC101158309 [Oryzias latipes]
Length = 564
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 92/149 (61%), Gaps = 4/149 (2%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T K+F+GN+ T+ E + +FE YG+VV C V++ + FVH++ + AI+ELNG+
Sbjct: 6 TVKLFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF 65
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R +TKVFVGNLS ++++LF +G V+ECD V+ Y FVH
Sbjct: 66 RGRNLVVEESRGRP---LHSTKVFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFVH 122
Query: 155 IDSP-DINKCIKELNGMMVDGKPMKVQIS 182
+++ D + I+ L+G G+P+ V++S
Sbjct: 123 MENKEDALQAIEALHGTSFKGRPLSVELS 151
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN++ + E ++ LF+ +GKV+ECD VK Y FVHMEN E+ AI+ L+G
Sbjct: 84 KVFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKG 143
Query: 97 KPLKIEAATSRKGPNTPTTKV 117
+PL +E + + PT K+
Sbjct: 144 RPLSVELSKVQPSKQAPTGKI 164
>gi|119594960|gb|EAW74554.1| RNA binding motif protein 4, isoform CRA_a [Homo sapiens]
Length = 326
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 90/151 (59%), Gaps = 4/151 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 14 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 73
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 74 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 130
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
+ D + I+ L+ G+ Q R
Sbjct: 131 RAEDAVEAIRGLDNTEFQGEQYNEQYGAVRT 161
>gi|119594961|gb|EAW74555.1| RNA binding motif protein 4, isoform CRA_b [Homo sapiens]
Length = 315
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 90/151 (59%), Gaps = 4/151 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
+ D + I+ L+ G+ Q R
Sbjct: 120 RAEDAVEAIRGLDNTEFQGEQYNEQYGAVRT 150
>gi|47212234|emb|CAF96201.1| unnamed protein product [Tetraodon nigroviridis]
Length = 565
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 92/149 (61%), Gaps = 4/149 (2%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T KIF+GN+ T+ E + +FE YG+VV C V++ + FVH++ + AI+ELNG+
Sbjct: 6 TVKIFVGNLALDTTQEELSCIFEPYGQVVSCSVLRQFAFVHLQGEGSAERAIRELNGREF 65
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R +TKVFVGNLS ++++LF +G V+ECD V+ Y FVH
Sbjct: 66 RGRNLVVEESRGRP---LHSTKVFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFVH 122
Query: 155 IDSP-DINKCIKELNGMMVDGKPMKVQIS 182
+++ D + I+ L+G G+P+ V++S
Sbjct: 123 MENKEDALQAIEALHGTSFKGRPLSVELS 151
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN++ + E ++ LF+ +GKV+ECD VK Y FVHMEN E+ AI+ L+G
Sbjct: 84 KVFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKG 143
Query: 97 KPLKIEAATSRKGPNTPTTKV 117
+PL +E + + TPT K+
Sbjct: 144 RPLSVELSKVQPSKQTPTGKI 164
>gi|26352530|dbj|BAC39895.1| unnamed protein product [Mus musculus]
gi|74183052|dbj|BAE20479.1| unnamed protein product [Mus musculus]
gi|74186507|dbj|BAE34743.1| unnamed protein product [Mus musculus]
Length = 168
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 91/152 (59%), Gaps = 4/152 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVR 187
+ D + I+ L+ G+ + VR
Sbjct: 120 RAEDAVEAIRGLDNTEFQGESLFWSAQYKAVR 151
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELN 90
FVHME E+ AI+ L+
Sbjct: 114 AFVHMERAEDAVEAIRGLD 132
>gi|410906739|ref|XP_003966849.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 343
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 90/152 (59%), Gaps = 4/152 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIFIGN++P T + + LF +YG V EC KNY FVHME+ + AI+EL+ +N
Sbjct: 3 KIFIGNLSPETEKDEVEALFVQYGTVTECAKYKNYAFVHMEDRKSATKAIRELHLHKLNG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI- 155
+P+ +E + KG P K+ + N+ E+RELF YGTV EC IV+N+ FVH+
Sbjct: 63 RPINVELSRG-KGHQGP-VKIHIANVEKGF-DKELRELFEEYGTVSECAIVKNFAFVHMP 119
Query: 156 DSPDINKCIKELNGMMVDGKPMKVQISTSRVR 187
+S + I+ L+ GK + VQIS SR R
Sbjct: 120 NSEEAMDAIQGLDNSEFQGKRIHVQISKSRPR 151
>gi|397517077|ref|XP_003828746.1| PREDICTED: RNA-binding protein 4 isoform 5 [Pan paniscus]
Length = 155
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 95/157 (60%), Gaps = 8/157 (5%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVD 193
+ ++ + G+ D +V+ RV Q G+D
Sbjct: 120 RAE--DAVEAIRGL--DNTEFQVETGFHRVNQ-DGLD 151
>gi|397517075|ref|XP_003828745.1| PREDICTED: RNA-binding protein 4 isoform 4 [Pan paniscus]
gi|18088917|gb|AAH21120.1| RBM4 protein [Homo sapiens]
gi|50949475|emb|CAH10593.1| hypothetical protein [Homo sapiens]
Length = 177
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 89/141 (63%), Gaps = 4/141 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKP 176
+ D + I+ L+ G+P
Sbjct: 120 RAEDAVEAIRGLDNTEFQGEP 140
>gi|149061996|gb|EDM12419.1| rCG48334, isoform CRA_d [Rattus norvegicus]
Length = 173
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 89/142 (62%), Gaps = 4/142 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPM 177
+ D + I+ L+ G+ +
Sbjct: 120 RAEDAVEAIRGLDNTEFQGESL 141
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELN 90
FVHME E+ AI+ L+
Sbjct: 114 AFVHMERAEDAVEAIRGLD 132
>gi|348525775|ref|XP_003450397.1| PREDICTED: RNA-binding protein 4B-like [Oreochromis niloticus]
Length = 338
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 90/153 (58%), Gaps = 5/153 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+GN+ T+ + I+ LF +YG V EC ++KN+ FVHM++ + AIK L+ ++
Sbjct: 3 KIFVGNLPRATNEDEIKALFTEYGTVTECAIIKNFAFVHMDDRKAATKAIKNLHLYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
P+ +EA+ G N + K+ V N+ + E+R LF YGTV EC +V+N+ FVH+
Sbjct: 63 TPINVEAS---HGKNQGSVKLHVANVEKGS-DDELRALFEEYGTVTECAVVKNFAFVHMS 118
Query: 157 SPD-INKCIKELNGMMVDGKPMKVQISTSRVRQ 188
+ D IK L+ GK + VQIS SR R
Sbjct: 119 NSDEAMDAIKGLDNTEFQGKRIHVQISKSRPRH 151
>gi|296218879|ref|XP_002755663.1| PREDICTED: RNA-binding protein 4B [Callithrix jacchus]
Length = 372
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 89/142 (62%), Gaps = 4/142 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPM 177
+ D + I+ L+ G+ +
Sbjct: 120 RAEDAVEAIRGLDNTEFQGELL 141
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELN 90
FVHME E+ AI+ L+
Sbjct: 114 AFVHMERAEDAVEAIRGLD 132
>gi|348525823|ref|XP_003450421.1| PREDICTED: RNA-binding protein 4B-like [Oreochromis niloticus]
Length = 347
Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 90/153 (58%), Gaps = 7/153 (4%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIFIGN++ T + I LF +YG V EC KNY FVHME+ + AI+EL+ +N
Sbjct: 3 KIFIGNLSQNTEKDEIEALFTQYGTVTECAKYKNYAFVHMEDRKSATKAIRELHLHKLNG 62
Query: 97 KPLKIEAATSR-KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI 155
+P+ +E + S +GP K+ V N+ E+R+LF+ YGTV EC IV+N+ FVH+
Sbjct: 63 RPINVEPSRSTDQGP----VKLHVANVEKGFDK-ELRDLFLEYGTVTECSIVKNFAFVHM 117
Query: 156 DSPD-INKCIKELNGMMVDGKPMKVQISTSRVR 187
+ D ++ L+ GK + VQIS SR R
Sbjct: 118 SNSDEAMDALQGLDNTEFQGKRIHVQISKSRPR 150
>gi|426369357|ref|XP_004051659.1| PREDICTED: RNA-binding protein 4B isoform 3 [Gorilla gorilla
gorilla]
Length = 151
Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 90/146 (61%), Gaps = 4/146 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQI 181
+ D + I+ L+ G+ + +
Sbjct: 120 RAEDAVEAIRGLDNTEFQGELLWAWV 145
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELN 90
FVHME E+ AI+ L+
Sbjct: 114 AFVHMERAEDAVEAIRGLD 132
>gi|410045417|ref|XP_003951989.1| PREDICTED: RNA-binding protein 4B isoform 1 [Pan troglodytes]
gi|426369355|ref|XP_004051658.1| PREDICTED: RNA-binding protein 4B isoform 2 [Gorilla gorilla
gorilla]
gi|441607717|ref|XP_004087894.1| PREDICTED: RNA-binding protein 4B isoform 2 [Nomascus leucogenys]
Length = 143
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGK 175
+ D + I+ L+ G+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGR 139
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIK-----ELNGQIV 94
FVHME E+ AI+ E G+I+
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGRII 141
>gi|311771542|ref|NP_001185773.1| RNA-binding protein 4 isoform 3 [Homo sapiens]
gi|397517073|ref|XP_003828744.1| PREDICTED: RNA-binding protein 4 isoform 3 [Pan paniscus]
gi|426369351|ref|XP_004051656.1| PREDICTED: RNA-binding protein 4 isoform 4 [Gorilla gorilla
gorilla]
gi|410222934|gb|JAA08686.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254454|gb|JAA15194.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295010|gb|JAA26105.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352745|gb|JAA42976.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 173
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGK 175
+ D + I+ L+ GK
Sbjct: 120 RAEDAVEAIRGLDNTEFQGK 139
>gi|351710885|gb|EHB13804.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 192
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 96/160 (60%), Gaps = 6/160 (3%)
Query: 19 QINISCRNMP-GFSS-VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHM 76
Q+ S P GF + V K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+
Sbjct: 20 QVAASFPTAPSGFQALVRMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHI 79
Query: 77 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFV 136
E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R F
Sbjct: 80 EDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFE 136
Query: 137 PYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGK 175
YG V+ECDIV++Y FVH++ + D + I+ L+ G+
Sbjct: 137 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGE 176
>gi|47086959|ref|NP_998482.1| uncharacterized protein LOC406277 [Danio rerio]
gi|45595715|gb|AAH67153.1| Zgc:56141 [Danio rerio]
Length = 341
Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 90/152 (59%), Gaps = 5/152 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIFIGN+ V+ ++ LF +YG V EC ++KN+ FVHM++ + AIK L+ ++
Sbjct: 3 KIFIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHLYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
P+ +EA+ +G N K+ V N+ T E+R LF YGTV EC I++N+ FVH++
Sbjct: 63 TPINVEAS---RGKNQGPVKLHVANVEKGTDD-ELRALFEDYGTVAECAIIKNFAFVHMN 118
Query: 157 SPD-INKCIKELNGMMVDGKPMKVQISTSRVR 187
+ D IK L+ GK + VQIS SR R
Sbjct: 119 NSDEAMDAIKGLDNTEFQGKRIHVQISKSRPR 150
>gi|363746805|ref|XP_003643805.1| PREDICTED: RNA-binding protein 4-like, partial [Gallus gallus]
Length = 123
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 80/123 (65%), Gaps = 3/123 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VCINVEAS---KNKSKASTKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 SPD 159
+
Sbjct: 120 RAE 122
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEE 81
S + K+ +GN++P + +R FE+YG V+ECD+VK+Y FVHME E+
Sbjct: 74 SKASTKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYAFVHMERAED 123
>gi|345321114|ref|XP_003430384.1| PREDICTED: RNA-binding protein 4B-like isoform 1 [Ornithorhynchus
anatinus]
gi|345321116|ref|XP_003430385.1| PREDICTED: RNA-binding protein 4B-like isoform 2 [Ornithorhynchus
anatinus]
gi|345321118|ref|XP_003430386.1| PREDICTED: RNA-binding protein 4B-like isoform 3 [Ornithorhynchus
anatinus]
Length = 143
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNMELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGK 175
+ D + I+ L+ G+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGR 139
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNMELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELN 90
FVHME E+ AI+ L+
Sbjct: 114 AFVHMERAEDAVEAIRGLD 132
>gi|426252106|ref|XP_004019759.1| PREDICTED: RNA-binding protein 4B isoform 2 [Ovis aries]
Length = 147
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 87/139 (62%), Gaps = 4/139 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDG 174
+ D + I+ L+ G
Sbjct: 120 RAEDAVEAIRGLDNTEFQG 138
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELN 90
FVHME E+ AI+ L+
Sbjct: 114 AFVHMERAEDAVEAIRGLD 132
>gi|326926668|ref|XP_003209520.1| PREDICTED: RNA-binding protein 4B-like [Meleagris gallopavo]
Length = 154
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 87/139 (62%), Gaps = 4/139 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VCINVEAS---KNKSKASTKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDG 174
+ D + I+ L+ G
Sbjct: 120 RAEDAVEAIRGLDNTEFQG 138
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELN 90
S + K+ +GN++P + +R FE+YG V+ECD+VK+Y FVHME E+ AI+ L+
Sbjct: 74 SKASTKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
>gi|194384258|dbj|BAG64902.1| unnamed protein product [Homo sapiens]
Length = 173
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ A++ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAMRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGK 175
+ D + I+ L+ GK
Sbjct: 120 RAEDAVEAIRGLDNTEFQGK 139
>gi|238231787|ref|NP_001154080.1| RNA-binding protein 4B [Oncorhynchus mykiss]
gi|225703906|gb|ACO07799.1| RNA-binding protein 4B [Oncorhynchus mykiss]
Length = 165
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 89/152 (58%), Gaps = 5/152 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIFIGNV G + I+ LF +YG V C +VKN+ FVHM++ + AI+ L+ ++
Sbjct: 3 KIFIGNVPRGADKDEIQALFSQYGAVTVCAIVKNFAFVHMDDRKSATKAIRSLHLYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ +G N K+ V N+ + E+R LF YGTV EC IV+N+ FVH+D
Sbjct: 63 TAINVEAS---RGKNQGAVKLHVTNV-EKGNDDELRTLFEEYGTVSECAIVKNFAFVHMD 118
Query: 157 SPD-INKCIKELNGMMVDGKPMKVQISTSRVR 187
+ D IK L+ + GK + VQIS SR R
Sbjct: 119 NSDEALDAIKGLDNIEFQGKRIHVQISKSRPR 150
>gi|55562787|gb|AAH86338.1| Rbm4b protein [Rattus norvegicus]
gi|60334832|gb|AAH90633.1| Rbm4 protein [Mus musculus]
gi|148701114|gb|EDL33061.1| mCG8382, isoform CRA_b [Mus musculus]
gi|149061995|gb|EDM12418.1| rCG48334, isoform CRA_c [Rattus norvegicus]
gi|219841854|gb|AAI44951.1| Rbm4 protein [Mus musculus]
Length = 143
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 87/139 (62%), Gaps = 4/139 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDG 174
+ D + I+ L+ G
Sbjct: 120 RAEDAVEAIRGLDNTEFQG 138
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELN 90
FVHME E+ AI+ L+
Sbjct: 114 AFVHMERAEDAVEAIRGLD 132
>gi|119594959|gb|EAW74553.1| RNA binding motif protein 14, isoform CRA_b [Homo sapiens]
Length = 618
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 94/160 (58%), Gaps = 6/160 (3%)
Query: 36 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QI 93
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60
Query: 94 VNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFV 153
+ L +E SR P T K+FVGN+S + E+R LF G V+ECD+V++Y FV
Sbjct: 61 RPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Query: 154 HIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
H++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 118 HMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 56/79 (70%), Gaps = 2/79 (2%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+ V
Sbjct: 78 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV 137
Query: 95 NEKPLKIEAAT--SRKGPN 111
K + +E +T +KGP
Sbjct: 138 KGKRINVELSTKGQKKGPG 156
>gi|221221726|gb|ACM09524.1| RNA-binding protein 4B [Salmo salar]
gi|221222322|gb|ACM09822.1| RNA-binding protein 4B [Salmo salar]
Length = 166
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 89/152 (58%), Gaps = 5/152 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIFIGNV + I+ LF +YG V EC +VKN+ FVHM++ + AI+ L+ ++
Sbjct: 3 KIFIGNVPREADKDEIQALFSQYGAVTECAIVKNFAFVHMDDRKSATKAIRSLHLYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ +G N K+ V N+ + E+R LF YGTV EC IV+N+ FVH+D
Sbjct: 63 TAINVEAS---RGKNQGAVKLHVTNV-EKGNDDELRTLFEEYGTVSECAIVKNFAFVHMD 118
Query: 157 SPD-INKCIKELNGMMVDGKPMKVQISTSRVR 187
+ D IK L+ + GK + VQIS SR R
Sbjct: 119 NSDEALDAIKGLDNVEFQGKRIHVQISKSRPR 150
>gi|149062001|gb|EDM12424.1| rCG48244, isoform CRA_b [Rattus norvegicus]
Length = 172
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGK 175
+ D + I+ L+ G+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGE 139
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELN 90
FVHME E+ AI+ L+
Sbjct: 114 AFVHMERAEDAVEAIRGLD 132
>gi|311771540|ref|NP_001185772.1| RNA-binding protein 4 isoform 2 [Homo sapiens]
gi|332249624|ref|XP_003273958.1| PREDICTED: RNA-binding protein 4 isoform 1 [Nomascus leucogenys]
gi|338712241|ref|XP_003362680.1| PREDICTED: RNA-binding protein 4 isoform 3 [Equus caballus]
gi|397517071|ref|XP_003828743.1| PREDICTED: RNA-binding protein 4 isoform 2 [Pan paniscus]
gi|426252102|ref|XP_004019757.1| PREDICTED: RNA-binding protein 4 isoform 2 [Ovis aries]
gi|426369347|ref|XP_004051654.1| PREDICTED: RNA-binding protein 4 isoform 2 [Gorilla gorilla
gorilla]
gi|426369349|ref|XP_004051655.1| PREDICTED: RNA-binding protein 4 isoform 3 [Gorilla gorilla
gorilla]
gi|441607708|ref|XP_003273960.2| PREDICTED: RNA-binding protein 4 isoform 3 [Nomascus leucogenys]
gi|40787678|gb|AAH64960.1| RBM4 protein [Homo sapiens]
gi|410222936|gb|JAA08687.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254456|gb|JAA15195.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295012|gb|JAA26106.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352749|gb|JAA42978.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 143
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 87/139 (62%), Gaps = 4/139 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDG 174
+ D + I+ L+ G
Sbjct: 120 RAEDAVEAIRGLDNTEFQG 138
>gi|345312744|ref|XP_003429290.1| PREDICTED: RNA-binding protein 4B-like isoform 2 [Ornithorhynchus
anatinus]
Length = 143
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 87/139 (62%), Gaps = 4/139 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNMELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDG 174
+ D + I+ L+ G
Sbjct: 120 RAEDAVEAIRGLDNTEFQG 138
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNMELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELN 90
FVHME E+ AI+ L+
Sbjct: 114 AFVHMERAEDAVEAIRGLD 132
>gi|417396175|gb|JAA45121.1| Putative rna-binding protein lark [Desmodus rotundus]
Length = 143
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 87/139 (62%), Gaps = 4/139 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRTLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDG 174
+ D + I+ L+ G
Sbjct: 120 RAEDAVEAIRGLDNTEFQG 138
>gi|28839776|gb|AAH47836.1| Zgc:56141 protein [Danio rerio]
gi|197247072|gb|AAI65109.1| Zgc:56141 protein [Danio rerio]
Length = 249
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 89/151 (58%), Gaps = 5/151 (3%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEK 97
++IGN+ V+ ++ LF +YG V EC ++KN+ FVHM++ + AIK L+ ++
Sbjct: 76 LYIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHLYKLHGT 135
Query: 98 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS 157
P+ +EA+ +G N K+ V N+ T E+R LF YGTV EC I++N+ FVH+++
Sbjct: 136 PINVEAS---RGKNQGPVKLHVANVEKGTD-DELRALFEDYGTVAECAIIKNFAFVHMNN 191
Query: 158 PD-INKCIKELNGMMVDGKPMKVQISTSRVR 187
D IK L+ GK + VQIS SR R
Sbjct: 192 SDEAMDAIKGLDNTEFQGKRIHVQISKSRPR 222
>gi|417403347|gb|JAA48481.1| Putative rna-binding protein lark [Desmodus rotundus]
Length = 616
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 94/160 (58%), Gaps = 6/160 (3%)
Query: 36 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QI 93
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL 60
Query: 94 VNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFV 153
+ L +E SR P T K+FVGN+S + E+R LF G V+ECD+V++Y FV
Sbjct: 61 RPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Query: 154 HID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
H++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 118 HMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 56/79 (70%), Gaps = 2/79 (2%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+ V
Sbjct: 78 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV 137
Query: 95 NEKPLKIEAAT--SRKGPN 111
K + +E +T +KGP
Sbjct: 138 KGKRINVELSTKGQKKGPG 156
>gi|432888609|ref|XP_004075076.1| PREDICTED: RNA-binding protein 4B-like [Oryzias latipes]
Length = 346
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 87/150 (58%), Gaps = 5/150 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+GN+ + E I+ LFE+YG V ECD+VKN+ FVHME+ + AIK L+ ++
Sbjct: 3 KIFVGNLPQEATEEEIKALFEEYGTVTECDIVKNFAFVHMEDRKAATKAIKNLHQHSLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ G N K+ V N+ E+R LF YGTV EC +V+N+ FVH+
Sbjct: 63 TAINVEAS---HGKNFGPVKIHVANVEKGCDE-ELRALFEEYGTVSECAVVKNFAFVHMP 118
Query: 157 SPD-INKCIKELNGMMVDGKPMKVQISTSR 185
+ D IKEL+ K + VQ+S SR
Sbjct: 119 NYDEAMDAIKELDNSDFQEKRIHVQVSKSR 148
>gi|291385475|ref|XP_002709279.1| PREDICTED: RNA binding motif protein 14 [Oryctolagus cuniculus]
Length = 667
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|5454064|ref|NP_006319.1| RNA-binding protein 14 isoform 1 [Homo sapiens]
gi|402892710|ref|XP_003909552.1| PREDICTED: RNA-binding protein 14 [Papio anubis]
gi|426369329|ref|XP_004051645.1| PREDICTED: RNA-binding protein 14 isoform 1 [Gorilla gorilla
gorilla]
gi|73913750|sp|Q96PK6.2|RBM14_HUMAN RecName: Full=RNA-binding protein 14; AltName: Full=Paraspeckle
protein 2; Short=PSP2; AltName: Full=RNA-binding motif
protein 14; AltName: Full=RRM-containing coactivator
activator/modulator; AltName:
Full=Synaptotagmin-interacting protein;
Short=SYT-interacting protein
gi|3746787|gb|AAC64058.1| SYT interacting protein SIP [Homo sapiens]
gi|12653435|gb|AAH00488.1| RBM14 protein [Homo sapiens]
gi|119594958|gb|EAW74552.1| RNA binding motif protein 14, isoform CRA_a [Homo sapiens]
gi|167773197|gb|ABZ92033.1| RNA binding motif protein 14 [synthetic construct]
gi|193785611|dbj|BAG51046.1| unnamed protein product [Homo sapiens]
gi|355566267|gb|EHH22646.1| RNA-binding motif protein 14 [Macaca mulatta]
gi|380783623|gb|AFE63687.1| RNA-binding protein 14 isoform 1 [Macaca mulatta]
gi|384944744|gb|AFI35977.1| RNA-binding protein 14 isoform 1 [Macaca mulatta]
Length = 669
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|15022507|gb|AAK77961.1|AF315632_1 coactivator activator [Homo sapiens]
Length = 669
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|197099062|ref|NP_001125363.1| RNA-binding protein 14 [Pongo abelii]
gi|73621448|sp|Q5RC41.1|RBM14_PONAB RecName: Full=RNA-binding protein 14; AltName: Full=RNA-binding
motif protein 14
gi|55727832|emb|CAH90669.1| hypothetical protein [Pongo abelii]
Length = 669
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|350539351|ref|NP_001233311.1| RNA-binding protein 14 [Pan troglodytes]
gi|397517055|ref|XP_003828735.1| PREDICTED: RNA-binding protein 14 isoform 1 [Pan paniscus]
gi|343958970|dbj|BAK63340.1| RNA-binding protein 14 [Pan troglodytes]
gi|410222928|gb|JAA08683.1| RNA binding motif protein 14 [Pan troglodytes]
gi|410256128|gb|JAA16031.1| RNA binding motif protein 14 [Pan troglodytes]
gi|410293820|gb|JAA25510.1| RNA binding motif protein 14 [Pan troglodytes]
gi|410339483|gb|JAA38688.1| RNA binding motif protein 14 [Pan troglodytes]
Length = 669
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|348565065|ref|XP_003468324.1| PREDICTED: RNA-binding protein 14-like [Cavia porcellus]
Length = 669
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|431910218|gb|ELK13291.1| RNA-binding protein 14 [Pteropus alecto]
Length = 664
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|403301165|ref|XP_003941269.1| PREDICTED: RNA-binding protein 14 [Saimiri boliviensis boliviensis]
Length = 669
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|345783055|ref|XP_852283.2| PREDICTED: RNA-binding protein 14 isoform 1 [Canis lupus
familiaris]
Length = 669
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|62897219|dbj|BAD96550.1| RNA binding motif protein 14 variant [Homo sapiens]
Length = 669
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|383415143|gb|AFH30785.1| RNA-binding protein 14 isoform 1 [Macaca mulatta]
Length = 669
Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|395851689|ref|XP_003798385.1| PREDICTED: RNA-binding protein 14 [Otolemur garnettii]
Length = 669
Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|346716308|ref|NP_001231150.1| RNA-binding protein 14 [Sus scrofa]
Length = 669
Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|387018162|gb|AFJ51199.1| RNA-binding protein 14-like [Crotalus adamanteus]
Length = 596
Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 91/149 (61%), Gaps = 6/149 (4%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKY--GKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
K+F+GNV S +R LFE G+VV+ + + Y FVH+ N+ AI++LNG ++
Sbjct: 6 KVFVGNVPEEASQAELRDLFEAAVPGEVVKVVLKEQYAFVHLRNEAAAERAIQKLNGHLL 65
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ + + +E SR P T T K+FVGN+S + E+R LF +G V+ECDIV++Y FVH
Sbjct: 66 HYRRVFLE--FSRPRP-THTVKIFVGNVSATCTSGELRVLFQEFGPVIECDIVKDYAFVH 122
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQIS 182
++ D I+ LNG + GK + V++S
Sbjct: 123 MEKDEDARTAIEHLNGREIKGKRINVELS 151
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 50/68 (73%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T KIF+GNV+ + +R LF+++G V+ECD+VK+Y FVHME DE+ RTAI+ LNG+ +
Sbjct: 82 TVKIFVGNVSATCTSGELRVLFQEFGPVIECDIVKDYAFVHMEKDEDARTAIEHLNGREI 141
Query: 95 NEKPLKIE 102
K + +E
Sbjct: 142 KGKRINVE 149
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELF---VPYGTVVECDIVRNYGFVHI-DSPDINKCIKELN 168
P KVFVGN+ + E+R+LF VP G VV+ + Y FVH+ + + I++LN
Sbjct: 3 PGVKVFVGNVPEEASQAELRDLFEAAVP-GEVVKVVLKEQYAFVHLRNEAAAERAIQKLN 61
Query: 169 GMMVDGKPMKVQISTSR 185
G ++ + + ++ S R
Sbjct: 62 GHLLHYRRVFLEFSRPR 78
>gi|296218875|ref|XP_002807420.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 14 [Callithrix
jacchus]
Length = 669
Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|301784863|ref|XP_002927842.1| PREDICTED: RNA-binding protein 14-like [Ailuropoda melanoleuca]
gi|281346285|gb|EFB21869.1| hypothetical protein PANDA_017685 [Ailuropoda melanoleuca]
Length = 669
Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|440899388|gb|ELR50691.1| RNA-binding protein 14 [Bos grunniens mutus]
Length = 669
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRRLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRRLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|62460492|ref|NP_001014901.1| RNA-binding protein 14 [Bos taurus]
gi|73621446|sp|Q5EA36.1|RBM14_BOVIN RecName: Full=RNA-binding protein 14; AltName: Full=RNA-binding
motif protein 14
gi|59857831|gb|AAX08750.1| RNA binding motif protein 14 [Bos taurus]
Length = 669
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|296471614|tpg|DAA13729.1| TPA: RNA-binding protein 14 [Bos taurus]
Length = 669
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|351706306|gb|EHB09225.1| RNA-binding protein 4B [Heterocephalus glaber]
Length = 333
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ S + I LFE+YGKV+E ++KNYGFVH+E+ AI+ L+ +
Sbjct: 3 KLFIGNLPWEASEQEICSLFEQYGKVLESGIIKNYGFVHIEDKTAAEDAIRNLHHYKLYG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S +R F YG V++CDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTVTNQGLRGKFAEYGPVIKCDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
+ D + I+ L+ G+ + VQ+S S + PG+ E
Sbjct: 120 QAEDEVEAIRGLDDTEFQGQRVYVQLSISSLWTAPGMGE 158
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 40/59 (67%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELN 90
S + K+ +GN++P + + +R F +YG V++CD+VK+Y FVHME E+ AI+ L+
Sbjct: 74 SKASTKLHVGNISPTVTNQGLRGKFAEYGPVIKCDIVKDYAFVHMEQAEDEVEAIRGLD 132
>gi|198417315|ref|XP_002119186.1| PREDICTED: similar to RNA binding motif protein 4B [Ciona
intestinalis]
Length = 157
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 89/150 (59%), Gaps = 4/150 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+G + + LF+ YG++ +C ++KNYGFVHM + + + AI L+ +
Sbjct: 3 KIFVGRLPEDVKKSELEELFKAYGEITDCSILKNYGFVHMADLNDAKKAIAGLDKTDLKG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +E +T++ +K+FVGNL T++ ++ +LF YGTV+ECD+V+NY FVH+
Sbjct: 63 NSINVELSTTKV---QKASKIFVGNLPPETKSADIHKLFKKYGTVIECDVVKNYAFVHMG 119
Query: 157 SPDINK-CIKELNGMMVDGKPMKVQISTSR 185
++ + I LN +G + VQ++ S+
Sbjct: 120 RENMARDAINGLNNTEFNGNKIGVQMARSQ 149
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+GN+ P T I LF+KYG V+ECDVVKNY FVHM + R AI LN N
Sbjct: 79 KIFVGNLPPETKSADIHKLFKKYGTVIECDVVKNYAFVHMGRENMARDAINGLNNTEFNG 138
Query: 97 KPLKIEAATSRK 108
+ ++ A S++
Sbjct: 139 NKIGVQMARSQR 150
>gi|16307494|gb|AAH10294.1| Rbm14 protein [Mus musculus]
Length = 618
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 36 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QI 93
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL 60
Query: 94 VNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFV 153
+ L +E SR P T K+FVGN+S + E+R LF G V+ECD+V++Y FV
Sbjct: 61 RPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Query: 154 HIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
H++ D I +LNG V GK + V++ST ++ P +
Sbjct: 118 HMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPAL 157
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+ V
Sbjct: 78 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV 137
Query: 95 NEKPLKIEAAT--SRKGP 110
K + +E +T +KGP
Sbjct: 138 KGKRINVELSTKGQKKGP 155
>gi|198419269|ref|XP_002128579.1| PREDICTED: similar to RNA binding motif protein 4B [Ciona
intestinalis]
Length = 336
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 89/150 (59%), Gaps = 4/150 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+G + + LF+ YG++ +C ++KNYGFVHM + + + AI L+ +
Sbjct: 3 KIFVGRLPEDVKKSELEELFKAYGEITDCSILKNYGFVHMADLNDAKKAIAGLDKTDLKG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +E +T++ +K+FVGNL T++ ++ +LF YGTV+ECD+V+NY FVH+
Sbjct: 63 NSINVELSTTKV---QKASKIFVGNLPPETKSADIHKLFKKYGTVIECDVVKNYAFVHMG 119
Query: 157 SPDINK-CIKELNGMMVDGKPMKVQISTSR 185
++ + I LN +G + VQ++ S+
Sbjct: 120 RENMARDAINGLNNTEFNGNKIGVQMARSQ 149
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+GN+ P T I LF+KYG V+ECDVVKNY FVHM + R AI LN N
Sbjct: 79 KIFVGNLPPETKSADIHKLFKKYGTVIECDVVKNYAFVHMGRENMARDAINGLNNTEFNG 138
Query: 97 KPLKIEAATSRK 108
+ ++ A S++
Sbjct: 139 NKIGVQMARSQR 150
>gi|148701115|gb|EDL33062.1| mCG8382, isoform CRA_c [Mus musculus]
Length = 614
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 36 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QI 93
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL 60
Query: 94 VNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFV 153
+ L +E SR P T K+FVGN+S + E+R LF G V+ECD+V++Y FV
Sbjct: 61 RPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Query: 154 HID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
H++ D I +LNG V GK + V++ST ++ P +
Sbjct: 118 HMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPAL 157
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+ V
Sbjct: 78 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV 137
Query: 95 NEKPLKIEAAT--SRKGP 110
K + +E +T +KGP
Sbjct: 138 KGKRINVELSTKGQKKGP 155
>gi|149061998|gb|EDM12421.1| rCG48334, isoform CRA_f [Rattus norvegicus]
Length = 614
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 36 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QI 93
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL 60
Query: 94 VNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFV 153
+ L +E SR P T K+FVGN+S + E+R LF G V+ECD+V++Y FV
Sbjct: 61 RPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Query: 154 HID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
H++ D I +LNG V GK + V++ST ++ P +
Sbjct: 118 HMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPAL 157
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+ V
Sbjct: 78 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV 137
Query: 95 NEKPLKIEAAT--SRKGP 110
K + +E +T +KGP
Sbjct: 138 KGKRINVELSTKGQKKGP 155
>gi|327290511|ref|XP_003229966.1| PREDICTED: RNA-binding protein 14-like [Anolis carolinensis]
Length = 607
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKY--GKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
K+F+GNV TS +R LF+ G V++ ++K + FVH+ ++ AI +LNGQ+V
Sbjct: 6 KVFVGNVPEETSQVELRDLFQAVEPGAVLKVALMKQFAFVHLRDEAAADRAIAKLNGQLV 65
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ + +E SR P T T K+FVGN+S + E+R LF +G VVECD V++Y FVH
Sbjct: 66 HGHRVVVE--HSRPRP-THTVKIFVGNVSATCTSGELRALFQEFGPVVECDTVKDYAFVH 122
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPG 191
++ D I+ LNG V G+ + V++S ++ P
Sbjct: 123 MEKDEDAAAAIEHLNGREVKGRRINVELSNKAHKRGPA 160
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T KIF+GNV+ + +R LF+++G VVECD VK+Y FVHME DE+ AI+ LNG+ V
Sbjct: 82 TVKIFVGNVSATCTSGELRALFQEFGPVVECDTVKDYAFVHMEKDEDAAAAIEHLNGREV 141
Query: 95 NEKPLKIEAA--TSRKGP 110
+ + +E + ++GP
Sbjct: 142 KGRRINVELSNKAHKRGP 159
>gi|351710883|gb|EHB13802.1| RNA-binding protein 14 [Heterocephalus glaber]
Length = 669
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 62/159 (38%), Positives = 94/159 (59%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E SR P T K+FVG++S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVE--MSRPRPMN-TWKIFVGDVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+G+V+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 MNTWKIFVGDVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|221222294|gb|ACM09808.1| RNA-binding protein 4B [Salmo salar]
Length = 229
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 89/152 (58%), Gaps = 5/152 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIFIGNV + I+ LF +YG V EC +VKN+ FVHM++ + AI+ L+ ++
Sbjct: 3 KIFIGNVPREADKDEIQALFSQYGAVTECAIVKNFAFVHMDDRKSATKAIRSLHLYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ +G N K+ V N+ + E+R LF YGTV EC IV+N+ FVH+D
Sbjct: 63 TAINVEAS---RGKNQGAVKLHVTNV-EKGNDDELRTLFEEYGTVSECAIVKNFAFVHMD 118
Query: 157 SPD-INKCIKELNGMMVDGKPMKVQISTSRVR 187
+ D IK L+ + GK + VQIS SR R
Sbjct: 119 NSDEALDAIKGLDNVEFQGKRIHVQISKSRPR 150
>gi|74139976|dbj|BAE31823.1| unnamed protein product [Mus musculus]
Length = 636
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ P +
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPAL 157
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|410906707|ref|XP_003966833.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 347
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 86/153 (56%), Gaps = 5/153 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+GN+ + E I+ LF +YG V EC ++KNY FVHM++ + AIK L+ ++
Sbjct: 3 KIFVGNLPREANQEEIKALFTEYGTVTECAIIKNYAFVHMDDRKAATKAIKSLHLHKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ G N K+ V N+ E+R LF YG+V EC +V+N+ FVH+
Sbjct: 63 TAINVEAS---HGKNPGAVKLHVANVEKGA-DDELRALFEEYGSVTECAVVKNFAFVHMS 118
Query: 157 SPD-INKCIKELNGMMVDGKPMKVQISTSRVRQ 188
+ D IK L+ GK + VQIS SR R
Sbjct: 119 NSDEAMDAIKGLDNTEFQGKRIHVQISKSRPRH 151
>gi|354496138|ref|XP_003510184.1| PREDICTED: RNA-binding protein 14 [Cricetulus griseus]
Length = 669
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ P +
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPAL 157
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|444510190|gb|ELV09525.1| RNA-binding protein 14 [Tupaia chinensis]
Length = 669
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+ LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELHSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + + LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELHSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|86262142|ref|NP_063922.2| RNA-binding protein 14 [Mus musculus]
gi|73621447|sp|Q8C2Q3.1|RBM14_MOUSE RecName: Full=RNA-binding protein 14; AltName: Full=RNA-binding
motif protein 14
gi|26353152|dbj|BAC40206.1| unnamed protein product [Mus musculus]
gi|74195530|dbj|BAE39579.1| unnamed protein product [Mus musculus]
gi|148701118|gb|EDL33065.1| mCG8382, isoform CRA_e [Mus musculus]
Length = 669
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ P +
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPAL 157
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|404501516|ref|NP_596879.1| RNA-binding protein 14 [Rattus norvegicus]
gi|392338034|ref|XP_003753424.1| PREDICTED: RNA-binding protein 14-like [Rattus norvegicus]
gi|392344818|ref|XP_003749082.1| PREDICTED: RNA-binding protein 14-like [Rattus norvegicus]
gi|149061997|gb|EDM12420.1| rCG48334, isoform CRA_e [Rattus norvegicus]
Length = 669
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ P +
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPAL 157
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|198425362|ref|XP_002128423.1| PREDICTED: similar to RNA binding motif protein 4 like [Ciona
intestinalis]
Length = 403
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 94/192 (48%), Gaps = 41/192 (21%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELN-----G 91
KIF+GN+ G + E +R LFE+YG V ECDV+ YGFVH+ D E AIK L+ G
Sbjct: 3 KIFVGNIADGVTTEEMRDLFEQYGNVTECDVLGTYGFVHLATDAEAEHAIKNLDKRDVKG 62
Query: 92 QIVN-EK---------------------------------PLKIEAATSRKGPNTPTTKV 117
Q +N EK P+ +AT++ TK+
Sbjct: 63 QQINVEKSKSGSRGRDRGGSGFRGGRGGMRGSFGYGGGYAPMVDNSATAKSARRAGCTKL 122
Query: 118 FVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDSPDINKCIKELNGMMVDGK 175
V NL D + E+R+LF YG V ECD+V R FVHI+ + I LNG G
Sbjct: 123 HVANLPDGVYSGELRDLFSRYGYVAECDVVEDRKIAFVHIEDAAADAAIHALNGHNFKGI 182
Query: 176 PMKVQISTSRVR 187
P+KVQ+S ++ R
Sbjct: 183 PLKVQMSKNQTR 194
>gi|311771525|ref|NP_001185765.1| RNA-binding protein 14 isoform 2 [Homo sapiens]
gi|345783057|ref|XP_003432362.1| PREDICTED: RNA-binding protein 14 [Canis lupus familiaris]
gi|397517057|ref|XP_003828736.1| PREDICTED: RNA-binding protein 14 isoform 2 [Pan paniscus]
gi|426369331|ref|XP_004051646.1| PREDICTED: RNA-binding protein 14 isoform 2 [Gorilla gorilla
gorilla]
gi|15022509|gb|AAK77962.1|AF315633_1 coactivator modulator [Homo sapiens]
Length = 156
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 88/151 (58%), Gaps = 6/151 (3%)
Query: 36 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G +
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60
Query: 95 NE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFV 153
+ L +E SR P T K+FVGN+S + E+R LF G V+ECD+V++Y FV
Sbjct: 61 RPGRALVVE--MSRPRP-LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Query: 154 HID-SPDINKCIKELNGMMVDGKPMKVQIST 183
H++ D I +LNG V GK + V++ST
Sbjct: 118 HMEKEADAKAAIAQLNGKEVKGKRINVELST 148
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 52/71 (73%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+ V
Sbjct: 78 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV 137
Query: 95 NEKPLKIEAAT 105
K + +E +T
Sbjct: 138 KGKRINVELST 148
>gi|197632059|gb|ACH70753.1| zgc:56141-like [Salmo salar]
gi|209155072|gb|ACI33768.1| RNA-binding protein 4B [Salmo salar]
Length = 347
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 88/152 (57%), Gaps = 5/152 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIFIGNV + I+ LF +YG V EC +VKN+ FVHM++ + AI+ L+ ++
Sbjct: 3 KIFIGNVPREADKDEIQALFSQYGAVTECAIVKNFAFVHMDDRKSATKAIRSLHLYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ +G N K+ V N+ E+R LF YGTV EC IV+N+ FVH+D
Sbjct: 63 TAINVEAS---RGKNQGAVKLHVTNVEKGNDD-ELRTLFEEYGTVSECAIVKNFAFVHMD 118
Query: 157 SPD-INKCIKELNGMMVDGKPMKVQISTSRVR 187
+ D IK L+ + GK + VQIS SR R
Sbjct: 119 NSDEALDAIKGLDNVEFQGKRIHVQISKSRPR 150
>gi|432921337|ref|XP_004080108.1| PREDICTED: RNA-binding protein 4B-like [Oryzias latipes]
Length = 344
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+GN+ + E I+ LFE+YG V EC ++KN+ FVHME+ + AIK L+ ++
Sbjct: 3 KIFVGNLPREATEEEIKALFEEYGAVTECAIIKNFAFVHMEDRKAATKAIKNLHQHSLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ G N K+ V N+ E+R LF YGTV EC +V+N+ FVH+
Sbjct: 63 TAINVEAS---HGKNFGPVKIHVANVEKGCDE-ELRALFEEYGTVSECAVVKNFAFVHMP 118
Query: 157 SPD-INKCIKELNGMMVDGKPMKVQISTSR 185
+ D IKEL+ K + VQ+S SR
Sbjct: 119 NYDEAMDAIKELDNSDFQEKRIHVQVSKSR 148
>gi|87578307|gb|AAI13268.1| RBM14 protein [Bos taurus]
Length = 156
Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 88/151 (58%), Gaps = 6/151 (3%)
Query: 36 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G +
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL 60
Query: 95 NE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFV 153
+ L +E SR P T K+FVGN+S + E+R LF G V+ECD+V++Y FV
Sbjct: 61 RPGRALVVE--MSRPRP-LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Query: 154 HID-SPDINKCIKELNGMMVDGKPMKVQIST 183
H++ D I +LNG V GK + V++ST
Sbjct: 118 HMEKEADAKAAIAQLNGKEVKGKRINVELST 148
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 52/71 (73%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+ V
Sbjct: 78 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV 137
Query: 95 NEKPLKIEAAT 105
K + +E +T
Sbjct: 138 KGKRINVELST 148
>gi|351715649|gb|EHB18568.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 197
Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 74/117 (63%), Gaps = 3/117 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + I LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 18 KLFIGNLPRKATEQEIHSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHS 77
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFV 153
+ +EA+ K N +TK+ VGN+S E+R F YG V+ECDIV++Y F
Sbjct: 78 VNINVEAS---KNKNKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFT 131
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 107 RKGPNTP--TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKC 163
R GP +P K+F+GNL E+ LF YG V+ECDI++NYGFVHI D
Sbjct: 7 RTGPVSPRPLVKLFIGNLPRKATEQEIHSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDA 66
Query: 164 IKELNGMMVDGKPMKVQISTSR 185
I+ L+ + + V+ S ++
Sbjct: 67 IRNLHHYKLHSVNINVEASKNK 88
>gi|339522327|gb|AEJ84328.1| RNA-binding protein 4 [Capra hircus]
Length = 143
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 87/139 (62%), Gaps = 4/139 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KN+GFVH E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNHGFVHREDKPAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ + A+T++ + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVGASTNK---SKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDG 174
+ D + I+ L+ G
Sbjct: 120 RAEDAVEAIRGLDNTEFQG 138
>gi|12836486|dbj|BAB23678.1| unnamed protein product [Mus musculus]
Length = 669
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 IDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ K I +LNG V GK + V++ST ++ P +
Sbjct: 119 MEKEAYAKAAIAQLNGKGVKGKRINVELSTKGQKKGPAL 157
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEAYAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 GVKGKRINVELSTKGQKKGP 155
>gi|351715343|gb|EHB18262.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 208
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 89/155 (57%), Gaps = 4/155 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR E+ G+V ECD++KNY F+H E++ A L+ ++
Sbjct: 3 KLFIGNLPQEATEQEIRSRSEQCGQVRECDIIKNYAFLHAEDETAAEDAKHNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K +TK+ VGN+S E+R YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKGKASTKLHVGNISPTCTNKELRAKREEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRP 190
+ D + I+ L+ GK M VQ+STS + + P
Sbjct: 120 PAEDAVEAIRGLDNTEFQGKRMHVQLSTSWLDRSP 154
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 20 INISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMEND 79
IN+ G +S K+ +GN++P + + +R E+YG V+ECD+VK+Y FVHME
Sbjct: 65 INVEASKNKGKAST---KLHVGNISPTCTNKELRAKREEYGPVIECDIVKDYAFVHMEPA 121
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATS 106
E+ AI+ L+ K + ++ +TS
Sbjct: 122 EDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|53547|emb|CAA36322.1| 16 kDA protein [Mus musculus]
Length = 573
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 5/159 (3%)
Query: 36 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + G ++
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGGARHRGPAWHELR 60
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E SR P T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 61 PGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 117
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ P +
Sbjct: 118 MEKEADAKAAIAQLNGQEVKGKRINVELSTKGQKKGPAL 156
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNGQ V
Sbjct: 77 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGQEV 136
Query: 95 NEKPLKIEAAT--SRKGP 110
K + +E +T +KGP
Sbjct: 137 KGKRINVELSTKGQKKGP 154
>gi|432921333|ref|XP_004080106.1| PREDICTED: RNA-binding protein 4.1-like [Oryzias latipes]
Length = 335
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 90/152 (59%), Gaps = 4/152 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIFIGN++P T E I LF +YG V EC +NY FVHM++ + AI+EL+ + V
Sbjct: 3 KIFIGNLSPETEKEEIEALFREYGAVTECAKYRNYAFVHMDDRKCATKAIRELHLRRVGG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ + +E + K P K+ V N+ + + E+RELF YG+V EC +++N+ FVH+
Sbjct: 63 RAMNVEPSRG-KNPQG-ALKLHVVNVEKGSES-ELRELFEEYGSVTECAVIKNFAFVHMA 119
Query: 157 SPDIN-KCIKELNGMMVDGKPMKVQISTSRVR 187
+ D ++ L+ GK ++V++S SR R
Sbjct: 120 NYDEGMDALQALDNKDFQGKRIQVRVSKSRPR 151
>gi|47210650|emb|CAF94318.1| unnamed protein product [Tetraodon nigroviridis]
Length = 184
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 33/184 (17%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIFIGN++P T + + LF +YG V EC KNY FVHME+ + AI+EL+ +N
Sbjct: 3 KIFIGNLSPETEKDEVEALFVQYGTVTECAKYKNYAFVHMEDRKSATKAIRELHLHKLNG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+P+ +E SR + K+ + N+ E+RELF YG V EC IV+N+ FVH+
Sbjct: 63 RPINVE--LSRGKGHMGPVKIHIANVEKGFEK-ELRELFEEYGIVSECSIVKNFAFVHMP 119
Query: 157 SPD------------------------------INKCIKELNGMMVDGKPMKVQISTSRV 186
+ + + C++ ++ GK + VQIS SR
Sbjct: 120 NSEEAMDAIQGLDNSEFQGEDLPRRSPCLFFRCCSTCVQPFTFCVLSGKRIHVQISKSRP 179
Query: 187 RQRP 190
R P
Sbjct: 180 RGGP 183
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKE 88
G +G KI I NV G EL R LFE+YG V EC +VKN+ FVHM N EE AI+
Sbjct: 72 GKGHMGPVKIHIANVEKGFEKEL-RELFEEYGIVSECSIVKNFAFVHMPNSEEAMDAIQG 130
Query: 89 LN 90
L+
Sbjct: 131 LD 132
>gi|410974606|ref|XP_003993734.1| PREDICTED: RNA-binding protein 14 isoform 1 [Felis catus]
Length = 669
Score = 97.1 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 58/159 (36%), Positives = 89/159 (55%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V C ++ +Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFDQRGKVYVCTLISDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LF++ GKV C ++ +Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFDQRGKVYVCTLISDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>gi|209155952|gb|ACI34208.1| RNA-binding protein 4B [Salmo salar]
Length = 345
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIFIGN+ + I LF ++G V EC KNY FVHM++ + AI+ L+ ++
Sbjct: 3 KIFIGNLPNEVEKDEIEALFTEHGTVTECAKFKNYAFVHMDDRKSATKAIRSLHLFKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+P+ +E + +G N K+ V N+ E+R LF YGTV EC I++N+ F+H+
Sbjct: 63 RPINVEPS---RGKNQGPVKLHVANVEKGN-GDELRTLFEEYGTVTECAIIKNFAFIHMS 118
Query: 157 SPDINK-CIKELNGMMVDGKPMKVQISTSRVR 187
+ D K IK L+ GK + VQ+S SR R
Sbjct: 119 NSDEAKDAIKGLDNTDFQGKRIHVQMSKSRPR 150
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQI 93
G K+ + NV G EL R LFE+YG V EC ++KN+ F+HM N +E + AIK L+
Sbjct: 76 GPVKLHVANVEKGNGDEL-RTLFEEYGTVTECAIIKNFAFIHMSNSDEAKDAIKGLDNTD 134
Query: 94 VNEKPLKIEAATSR 107
K + ++ + SR
Sbjct: 135 FQGKRIHVQMSKSR 148
>gi|1149523|emb|CAA64070.1| Neosin [Mus musculus]
Length = 153
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 80/129 (62%), Gaps = 4/129 (3%)
Query: 20 INISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMEND 79
+ ++ R +P + V K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+
Sbjct: 9 LRLNSRPLPE-ALVRMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDK 67
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R F YG
Sbjct: 68 TAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYG 124
Query: 140 TVVECDIVR 148
V+ECDIV+
Sbjct: 125 PVIECDIVK 133
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 98 PLKIEAATSRKGPNT--PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI 155
P +I SR P K+F+GNL E+R LF YG V+ECDI++NYGFVHI
Sbjct: 5 PCRILRLNSRPLPEALVRMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHI 64
Query: 156 -DSPDINKCIKELNGMMVDGKPMKVQISTSR 185
D I+ L+ + G + V+ S ++
Sbjct: 65 EDKTAAEDAIRNLHHYKLHGVNINVEASKNK 95
>gi|410974608|ref|XP_003993735.1| PREDICTED: RNA-binding protein 14 isoform 2 [Felis catus]
Length = 156
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
Query: 36 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G +
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60
Query: 95 NE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFV 153
+ L +E SR P T K+FVGN+S + E+R LF G V C ++ +Y FV
Sbjct: 61 RPGRALVVE--MSRPRP-LNTWKIFVGNVSAACTSQELRSLFDQRGKVYVCTLISDYAFV 117
Query: 154 HID-SPDINKCIKELNGMMVDGKPMKVQIST 183
H++ D I +LNG V GK + V++ST
Sbjct: 118 HMEKEADAKAAIAQLNGKEVKGKRINVELST 148
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 48/71 (67%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T+KIF+GNV+ + + +R LF++ GKV C ++ +Y FVHME + + + AI +LNG+ V
Sbjct: 78 TWKIFVGNVSAACTSQELRSLFDQRGKVYVCTLISDYAFVHMEKEADAKAAIAQLNGKEV 137
Query: 95 NEKPLKIEAAT 105
K + +E +T
Sbjct: 138 KGKRINVELST 148
>gi|432896166|ref|XP_004076291.1| PREDICTED: uncharacterized protein LOC101157077 [Oryzias latipes]
Length = 515
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 88/157 (56%), Gaps = 11/157 (7%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN+ + E I +F YG++ C +++ Y FV ++ + AI+ L+G+
Sbjct: 7 KLFVGNLPIDATHEEISKIFSPYGEINTCSLLRQYAFVTLKGEGAADRAIRHLDGKEYRG 66
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR-------N 149
+PL +E + +R PN +TK+FVGNLS A ++ LF +G V++CD V+
Sbjct: 67 RPLVVEESRARP-PN--STKIFVGNLSATCSADDLHGLFSTFGRVLDCDKVKARLCSNVG 123
Query: 150 YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSR 185
Y FVH++ + I LNG M G+ + V++S ++
Sbjct: 124 YAFVHMERKEEAQAAIDALNGTMFKGRQLAVELSKAQ 160
>gi|410914728|ref|XP_003970839.1| PREDICTED: uncharacterized protein LOC101079913 [Takifugu rubripes]
Length = 577
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 96/174 (55%), Gaps = 15/174 (8%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN+ + + + LF YG++ C +++ Y FV ++ + AI+ L+G+
Sbjct: 43 KLFVGNLPIDATQDELNKLFAPYGEINTCSLLRQYAFVTLKGEGAADRAIRHLDGKEYRG 102
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR-------N 149
+PL +E + +R PN +TKVFVGN+S A ++ LF +G V++CD V+
Sbjct: 103 RPLVVEESRARP-PN--STKVFVGNISATCSADDLHGLFASFGRVLDCDKVKARLCSNVG 159
Query: 150 YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKSV 202
Y FVH++ + I LNG M G+ + V++S + +P V+++V G S
Sbjct: 160 YAFVHMERKEEAMAAIDALNGTMFKGRQLAVELS----KAQPLVNQMVSGGNST 209
>gi|169646279|ref|NP_001108616.1| RNA binding motif protein 14 [Danio rerio]
gi|194332550|ref|NP_001123764.1| uncharacterized protein LOC100170513 [Xenopus (Silurana)
tropicalis]
gi|63100727|gb|AAH95368.1| Zgc:110682 [Danio rerio]
gi|163915521|gb|AAI57377.1| Zgc:110682 protein [Danio rerio]
gi|189441765|gb|AAI67521.1| LOC100170513 protein [Xenopus (Silurana) tropicalis]
Length = 471
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 91/154 (59%), Gaps = 11/154 (7%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN++ T+ + + LF +G+VV V++ + FVH++ + +AI++LNG+
Sbjct: 8 KLFVGNLDLETTQDDLIALFAPFGEVVHITVLRQFAFVHLQGEGAADSAIRDLNGREYRG 67
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN------- 149
+ L +E + KG +TKVFVGNL + ++ +LF PYG V++CD V+
Sbjct: 68 RSLVVEES---KGRPLNSTKVFVGNLCASCSVEDLYDLFSPYGKVLDCDKVKTKPSSLTG 124
Query: 150 YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182
Y FV+++ D + I+ L+G G+P+ V++S
Sbjct: 125 YAFVYMEHKEDAEQAIEGLHGTTFMGRPLAVELS 158
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKEL 89
K+F+GN+ SVE + LF YGKV++CD VK Y FV+ME+ E+ AI+ L
Sbjct: 84 KVFVGNLCASCSVEDLYDLFSPYGKVLDCDKVKTKPSSLTGYAFVYMEHKEDAEQAIEGL 143
Query: 90 NGQIVNEKPLKIEAATSRKGPN 111
+G +PL +E + ++ N
Sbjct: 144 HGTTFMGRPLAVELSKVQQSTN 165
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVDG 174
K+FVGNL T ++ LF P+G VV ++R + FVH+ + I++LNG G
Sbjct: 8 KLFVGNLDLETTQDDLIALFAPFGEVVHITVLRQFAFVHLQGEGAADSAIRDLNGREYRG 67
Query: 175 KPMKVQISTSR 185
+ + V+ S R
Sbjct: 68 RSLVVEESKGR 78
>gi|348519072|ref|XP_003447055.1| PREDICTED: hypothetical protein LOC100709068 [Oreochromis
niloticus]
Length = 603
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 96/174 (55%), Gaps = 15/174 (8%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN+ + E + LF YG++ C +++ Y FV ++ + AI+ L+G+
Sbjct: 65 KLFVGNLPIDATHEELNKLFAPYGEINTCSLLRQYAFVTLKGEGAADRAIRHLDGKEYRG 124
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR-------N 149
+PL +E + +R PN +TKVFVGNLS A ++ LF +G V++CD V+
Sbjct: 125 RPLVVEESRARP-PN--STKVFVGNLSATCSADDLHGLFSAFGRVLDCDKVKARLCSNVG 181
Query: 150 YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKSV 202
Y FVH++ + I+ LNG M G+ + V++S + +P +++++ S
Sbjct: 182 YAFVHMERKEEALAAIEALNGTMFKGRQLAVELS----KAQPLINQIMTAGNSA 231
>gi|47210651|emb|CAF94319.1| unnamed protein product [Tetraodon nigroviridis]
Length = 256
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+GN+ + E I+ LF +YG V EC ++KNY FVHM++ + AIK L+ ++
Sbjct: 3 KIFVGNLPREANQEEIKALFTEYGTVTECAIIKNYAFVHMDDRKAATKAIKNLHLHKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ G N K+ V N+ E+R LF YG+V EC +V+N+ FVH+
Sbjct: 63 TAINVEAS---HGKNPGAVKLHVANVEKGADD-ELRALFEEYGSVTECAVVKNFAFVHMS 118
Query: 157 SPD-INKCIKELNGMMVDGK 175
+ D IK L+ GK
Sbjct: 119 NSDEAMDAIKGLDNTEFQGK 138
>gi|351704764|gb|EHB07683.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 143
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 82/139 (58%), Gaps = 4/139 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV ECD++KNYGFV +E+ AI L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVQECDIIKNYGFVLIEDKTAPEDAIHNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+ YG V+ECDIV++Y FV+++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNEELWAKLEEYGPVIECDIVKDYAFVYME 119
Query: 157 -SPDINKCIKELNGMMVDG 174
+ D + I+ L+ G
Sbjct: 120 RAEDAVEAIRGLDNTEFQG 138
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + E + E+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNEELWAKLEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELN 90
FV+ME E+ AI+ L+
Sbjct: 114 AFVYMERAEDAVEAIRGLD 132
>gi|222824844|emb|CAM12246.2| RNA binding protein 4 [Danio rerio]
Length = 99
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+GN++P T+ E IR LF +YGK+ ECD+VKN+GFVHM++ E AI+ L+ ++N
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
+ +E + KG +TK+ VGN+S + E+R F
Sbjct: 63 MAMNVEMS---KGKPKTSTKLHVGNISSSCTNQELRAKF 98
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 174
K+FVGNLS NT A E+R LF YG + ECDIV+N+GFVH+DS + ++ I+ L+ M++G
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62
Query: 175 KPMKVQISTSR 185
M V++S +
Sbjct: 63 MAMNVEMSKGK 73
>gi|198434688|ref|XP_002126691.1| PREDICTED: similar to RNA binding motif protein 4B [Ciona
intestinalis]
Length = 290
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 82/147 (55%), Gaps = 4/147 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+G + P + +R LFE YG V +CD++++YGFVHM ++ E + AI L+ +
Sbjct: 3 KIFVGRLAPTVTAVQLRELFENYGTVSDCDILRDYGFVHMSSEVEAQKAITALDKYELVG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
L +E +TSR + + ++ V NL T ++ +LF +GTV C I + VH+
Sbjct: 63 SKLSVEMSTSR---SMKSCQLTVKNLPRGTNPQDLHKLFKKFGTVTLCRISSDQAVVHMR 119
Query: 157 SPDI-NKCIKELNGMMVDGKPMKVQIS 182
P + ++ L+G + G + V+++
Sbjct: 120 FPSMATNAVRNLSGEIYRGNVLSVELA 146
Score = 39.3 bits (90), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
M S+ + ++ + N+ GT+ + + LF+K+G V C + + VHM A+
Sbjct: 69 MSTSRSMKSCQLTVKNLPRGTNPQDLHKLFKKFGTVTLCRISSDQAVVHMRFPSMATNAV 128
Query: 87 KELNGQIVNEKPLKIEAA 104
+ L+G+I L +E A
Sbjct: 129 RNLSGEIYRGNVLSVELA 146
>gi|311771545|ref|NP_001185774.1| RBM14-RBM4 protein isoform 1 [Homo sapiens]
gi|165928937|gb|ABY74511.1| transcriptional coactivator CoAZ [Homo sapiens]
Length = 339
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 82/161 (50%), Gaps = 30/161 (18%)
Query: 36 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G +
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60
Query: 95 NE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFV 153
+ L +E SR P T K+FVGN+S + E+R LF G V+ECD+V+
Sbjct: 61 RPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK----- 112
Query: 154 HIDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
GK M VQ+STSR+R PG+ +
Sbjct: 113 --------------------GKRMHVQLSTSRLRTAPGMGD 133
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 29/37 (78%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 69
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112
>gi|165928940|gb|ABY74512.1| transcriptional coactivator CoAZ [Mus musculus]
Length = 336
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 82/161 (50%), Gaps = 30/161 (18%)
Query: 36 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G +
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL 60
Query: 95 NE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFV 153
+ L +E SR P T K+FVGN+S + E+R LF G V+ECD+V+
Sbjct: 61 RPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK----- 112
Query: 154 HIDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
GK M VQ+STSR+R PG+ +
Sbjct: 113 --------------------GKRMHVQLSTSRLRTAPGMGD 133
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 29/37 (78%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 69
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112
>gi|159164257|pdb|2DNP|A Chain A, Solution Structure Of Rna Binding Domain 2 In Rna-Binding
Protein 14
Length = 90
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 59/85 (69%)
Query: 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELN 90
SS T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LN
Sbjct: 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLN 64
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTT 115
G+ V K + +E +T + + P++
Sbjct: 65 GKEVKGKRINVELSTKGQKKSGPSS 89
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKEL 167
G + T K+FVGN+S + E+R LF G V+ECD+V++Y FVH++ D I +L
Sbjct: 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQL 63
Query: 168 NGMMVDGKPMKVQIST 183
NG V GK + V++ST
Sbjct: 64 NGKEVKGKRINVELST 79
>gi|440802526|gb|ELR23455.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 348
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 81/151 (53%), Gaps = 17/151 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEK 97
IF+GN++P T+ E +R LFE G + D+ + Y FV +EN A++EL+G + K
Sbjct: 63 IFVGNLDPYTTTEEVRELFEGKGDIRRVDMKQGYAFVFLENGHH--RAVRELDGSLHGRK 120
Query: 98 PLKIEAA------------TSRKGPNTPTTKVFVGNLSD-NTRAPEVRELFVPYGTVVEC 144
L++E A R P+ +FV N +TRA ++ +LF PYG +V
Sbjct: 121 RLRVELARGDGLIKKREDERRRDAARRPSETLFVVNFDAISTRARDLEDLFSPYGRIVRI 180
Query: 145 DIVRNYGFVHIDS-PDINKCIKELNGM-MVD 173
++ RN+GFV + + + ++ LNG MVD
Sbjct: 181 ELKRNFGFVQFSAVEEATRALEALNGTKMVD 211
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMV 172
P +FVGNL T EVRELF G + D+ + Y FV +++ ++ ++EL+G +
Sbjct: 59 PERAIFVGNLDPYTTTEEVRELFEGKGDIRRVDMKQGYAFVFLENGH-HRAVRELDGSLH 117
Query: 173 DGKPMKVQIS 182
K ++V+++
Sbjct: 118 GRKRLRVELA 127
>gi|332249851|ref|XP_003274067.1| PREDICTED: RNA-binding protein 14, partial [Nomascus leucogenys]
Length = 617
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 56/79 (70%), Gaps = 2/79 (2%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+ V
Sbjct: 27 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV 86
Query: 95 NEKPLKIEAAT--SRKGPN 111
K + +E +T +KGP
Sbjct: 87 KGKRINVELSTKGQKKGPG 105
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMV 172
T K+FVGN+S + E+R LF G V+ECD+V++Y FVH++ D I +LNG V
Sbjct: 27 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV 86
Query: 173 DGKPMKVQISTSRVRQRPGV 192
GK + V++ST ++ PG+
Sbjct: 87 KGKRINVELSTKGQKKGPGL 106
>gi|444722852|gb|ELW63526.1| RNA-binding protein 4 [Tupaia chinensis]
Length = 131
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ T+ + +R LFE+YGKV+ C ++KNYGFVH+++ A+ L+ +
Sbjct: 3 KLFIGNLPRETTEQEMRSLFEQYGKVLGCGIIKNYGFVHIKDKTAPEDAMHNLHHYKLQG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY 150
+ +EA+ K + +TK+ VG +S E+R F YG V+ECDIV++Y
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGIISPTCTNKELRAKFEEYGPVIECDIVKDY 113
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 173
K+F+GNL T E+R LF YG V+ C I++NYGFVHI D + L+ +
Sbjct: 2 AKLFIGNLPRETTEQEMRSLFEQYGKVLGCGIIKNYGFVHIKDKTAPEDAMHNLHHYKLQ 61
Query: 174 GKPMKVQISTSRVR 187
G + V+ S ++ +
Sbjct: 62 GVNINVEASKNKSK 75
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 21/184 (11%)
Query: 17 NNQINIS-CRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------- 68
N I +S R P G IFI N++ ++ + F +G ++ C +
Sbjct: 108 NKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQS 167
Query: 69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLS 123
K YGFV +++E +TAI +LNG ++N+K + + ++ ++ +K ++V NLS
Sbjct: 168 KGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLS 227
Query: 124 DNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 175
D+T ++R+ F YGT+ ++R+ +GFV+ ++P D K + LNG D K
Sbjct: 228 DSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDK 287
Query: 176 PMKV 179
V
Sbjct: 288 EWYV 291
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ TS + +R F +YG + V+++ +GFV+ EN E+ A+ LN
Sbjct: 221 IYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALN 280
Query: 91 GQIVNEKPLKIEAATSR-------KGPNTPTTK----------VFVGNLSDNTRAPEVRE 133
G+ ++K + A + K T K ++V NL D +++E
Sbjct: 281 GKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKE 340
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF YGT+ C ++R+ GFV +P + ++ + E+NG M+ KP+ V ++ +
Sbjct: 341 LFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRK 400
Query: 186 VRQR 189
+R
Sbjct: 401 EERR 404
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 21/166 (12%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G+++ + + LF + G+VV V ++ YG+V+ N ++ AI
Sbjct: 39 TTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAI 98
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
LN +N K +++ + SR+ P + +F+ NL + + E F +GT++
Sbjct: 99 DVLNFTPLNNKTIRV--SVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIIS 156
Query: 144 CDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVQI 181
C I + YGFV DS + + I +LNGM+++ K + V +
Sbjct: 157 CKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGV 202
>gi|397576490|gb|EJK50286.1| hypothetical protein THAOC_30767 [Thalassiosira oceanica]
Length = 397
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 20/162 (12%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKEL 89
KI++GN+N T+ E ++ FE++G V++C + + +GF+ M +DE+ AI+ +
Sbjct: 197 KIYVGNLNFDTTAEDLKAAFEEFGDVMDCFLPVDYDGNARGFGFIQM-SDEDSLKAIEGM 255
Query: 90 NGQIVNEKPLKIEAA---TSRKGPNTPT-TKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
NG + + L + + R P TK++VGNLS T +RELF YG+V++C
Sbjct: 256 NGVEFDGRTLNVNKSLPKGQRPAAAAPKETKLYVGNLSWGTEEGALRELFGEYGSVIDCY 315
Query: 146 I--------VRNYGFVHIDSPDINKCIKELNGMMVDGKPMKV 179
I R + FV + D + E +G +DG+ ++V
Sbjct: 316 IPTDRETGQHRGFAFVTMGPDDALRAADETDGYELDGRILRV 357
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 28/166 (16%)
Query: 46 GTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105
G SV++ PL + GK + + FV M N ++ AI++LN + + + + +
Sbjct: 123 GGSVDV--PLSRETGKC------RGFAFVAMTNSDDHEAAIEQLNMSEIAGRTIYVSESL 174
Query: 106 SRK------------GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI------- 146
+ K++VGNL+ +T A +++ F +G V++C +
Sbjct: 175 PKDQVAEKKKKFQGRKKRDEGAKIYVGNLNFDTTAEDLKAAFEEFGDVMDCFLPVDYDGN 234
Query: 147 VRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
R +GF+ + D K I+ +NG+ DG+ + V S + QRP
Sbjct: 235 ARGFGFIQMSDEDSLKAIEGMNGVEFDGRTLNVNKSLPKG-QRPAA 279
>gi|392921057|ref|NP_001256408.1| Protein RNP-1, isoform a [Caenorhabditis elegans]
gi|20455220|sp|Q10667.1|RNP1_CAEEL RecName: Full=RNA-binding protein rnp-1
gi|733066|gb|AAA92287.1| RNP-1 [Caenorhabditis elegans]
gi|3881837|emb|CAB01455.1| Protein RNP-1, isoform a [Caenorhabditis elegans]
Length = 305
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%)
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDG 174
+K+FVGNL DN + +++++F P+ V ECDIV+NY FVHI+ D++ I L G +DG
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEEDDVDPIITRLTGYTIDG 62
Query: 175 KPMKVQISTSRVRQRPGV 192
K + ++ STS++R PG+
Sbjct: 63 KVVNIKKSTSKLRPTPGM 80
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN+ ++ +F+ + KV ECD+VKNY FVH+E D+ I L G ++
Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEEDDVDPI-ITRLTGYTIDG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPE 130
K + I+ +TS+ P SD R P+
Sbjct: 63 KVVNIKKSTSKLRPTPGMPNRCFRCQSDEHRTPQ 96
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 25/179 (13%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ G + + F +G ++ C VV K +
Sbjct: 81 CRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDNNSSKGF 140
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT----TKVFVGNLSDNTR 127
GFVH E+ + AI ++NG ++N + + + S K PT T VF NL+++
Sbjct: 141 GFVHYESQDSADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEIKFTNVFFKNLAEDVT 200
Query: 128 APEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDINKCIKEL-NGMMVDGKPM 177
+ +++EL PYGT+ I+ + + F + +S D K + E+ NG + GKP+
Sbjct: 201 SDQLKELLAPYGTITNVAIMLDEKTGKSKGFAFANFESADAAKNVVEIENGKVFHGKPL 259
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 22/173 (12%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G++ P S + + +F + G V V ++ Y +V+ N + A+ L
Sbjct: 12 LYVGDLLPEVSEQTLFEVFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNAADAERALDTL 71
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N + KP +I S++ P+ + VF+ NL + + F +G ++ C +
Sbjct: 72 NNTPIRGKPCRI--MWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKV 129
Query: 147 V-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV-QISTSRVRQRP 190
V + +GFVH +S D +K I ++NGMM++G+ + V +S+ R +P
Sbjct: 130 VTDDNNSSKGFGFVHYESQDSADKAIAKVNGMMINGQKVFVGPFKSSKERGQP 182
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+F N+ + + ++ L YG + ++ K + F + E+ + + ++
Sbjct: 190 VFFKNLAEDVTSDQLKELLAPYGTITNVAIMLDEKTGKSKGFAFANFESADAAKNVVEIE 249
Query: 90 NGQIVNEKPL-------KIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELFVP 137
NG++ + KPL KIE K +T TK +++ N+ D+ ++RE+F
Sbjct: 250 NGKVFHGKPLYAGRAQKKIEREAELK--HTFETKYQGVNLYIKNIDDSIDNDKLREVFSQ 307
Query: 138 YGTVVECDIVRN--------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQIS 182
+GT+ ++++ +GFV SPD + + E+NG M+ KP+ V ++
Sbjct: 308 FGTITSAVVMKDDKATTSKGFGFVCYTSPDEATRAVTEMNGRMIGTKPLYVALA 361
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P F G IFI N++ + + F +G ++ C V K Y
Sbjct: 113 RIMWSHRD-PAFRKSGVGNIFIKNLDRSVDNKALHDTFSAFGNILSCKVAQDLKGESKGY 171
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT----TKVFVGNLSDNTR 127
GFVH E DE R AI+++NG ++ K + + R ++ + T VFV NL +
Sbjct: 172 GFVHFEKDESARLAIEKVNGMLLEGKKVYVGPFLRRSERSSDSEVKFTNVFVKNLDEAVS 231
Query: 128 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
EV+ +F +GTV C I+R+ +GF++ + P+ ++ LNG V+ K + V
Sbjct: 232 DDEVKAMFAEHGTVNSCIIMRDDEGKSKGFGFINFEEPEQAASAVQALNGKDVNCKELYV 291
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 32/196 (16%)
Query: 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGR 83
S V +F+ N++ S + ++ +F ++G V C ++ K +GF++ E E+
Sbjct: 214 SEVKFTNVFVKNLDEAVSDDEVKAMFAEHGTVNSCIIMRDDEGKSKGFGFINFEEPEQAA 273
Query: 84 TAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNT 126
+A++ LNG+ VN K L K E S + ++V NL D+
Sbjct: 274 SAVQALNGKDVNCKELYVGRAQKKAEREAMLRAKFEELRSERIAKYQGMNLYVKNLHDDI 333
Query: 127 RAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMK 178
+R F +GT+ ++ R +GFV SP + + + E+NG M+ GKP+
Sbjct: 334 DDETLRTEFSQFGTITSAKVMVDSAGKSRGFGFVCYASPEEATRAVTEMNGRMIKGKPIY 393
Query: 179 VQISTSRVRQRPGVDE 194
V ++ R +R +++
Sbjct: 394 VALAQRRDVRRAQLEQ 409
>gi|403294352|ref|XP_003938154.1| PREDICTED: RNA-binding protein 4-like [Saimiri boliviensis
boliviensis]
Length = 143
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 12/143 (8%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK----NYGFVHMENDEEGRTAIKELNGQ 92
K+FI N+ P S F++YGKV+ECD++K NYGFVH+E+ AI+ L+
Sbjct: 3 KLFIRNL-PRESQS---SFFKQYGKVLECDIIKDYGFNYGFVHIEDKTAAEEAIRNLHHC 58
Query: 93 IVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGF 152
++ IEA+ + + +TK+ VG++S E+R F G VVECDI+++Y F
Sbjct: 59 KLHGVHTNIEAS---ENNSKTSTKLHVGSISPTCTKKELRTQFEECGLVVECDIMKDYAF 115
Query: 153 VHID-SPDINKCIKELNGMMVDG 174
VH++ + D + I+ L+ G
Sbjct: 116 VHMERAEDAAEAIRGLDNTEFSG 138
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P GT IFI N++ + + F +G ++ C V K YGFV E DE
Sbjct: 120 PSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDASGESKGYGFVQYERDE 179
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKG-PNTPT----TKVFVGNLSDNTRAPEVRELF 135
+ AI +LNG ++N+K + + ++ N+P V+V NLS+NT +++E+F
Sbjct: 180 AAQAAIDKLNGMLMNDKKVYVGPFIRKQERDNSPGQVKFNNVYVKNLSENTTEDDLKEIF 239
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
+GT+ ++R +GFV+ +SP D + ++ELNG D K V
Sbjct: 240 GKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAVQELNGKKFDDKEWYV 291
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 85/180 (47%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ + ++ +F K+G + V++ +GFV+ E+ ++ A++ELN
Sbjct: 221 VYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAVQELN 280
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++K K E T +++ NL D+ ++RE
Sbjct: 281 GKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDKLRE 340
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF YGT+ C ++R+ GFV S D ++ + E+N MV KP+ V ++ +
Sbjct: 341 LFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYVALAQRK 400
Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY-------GFVHMENDEEGRTAIKELN 90
+++ N++ + +R LF +YG + C V+++ GFV ++ E+ A+ E+N
Sbjct: 324 LYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMN 383
Query: 91 GQIVNEKPLKIEAATSRK 108
++V KPL + A ++
Sbjct: 384 SKMVGSKPLYVALAQRKE 401
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 163
P T ++VG+L + + ++ ++F G VV + R+ Y +V+ SP D +
Sbjct: 38 PATSLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARA 97
Query: 164 IKELNGMMVDGKPMKVQIS 182
++ LN ++GKP+++ S
Sbjct: 98 LEMLNFTPINGKPIRIMYS 116
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G+ IFI N++ + + F +G ++ C V K +GFV E +E
Sbjct: 202 PSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEE 261
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
++A+K LNG ++N+KP+ + ++ + + K VFV NLS++T ++ ++F
Sbjct: 262 SAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVF 321
Query: 136 VPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
YGT+ ++ R +GFV+ +SP D + ++ELNG ++ K V
Sbjct: 322 SEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYV 373
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 95/204 (46%), Gaps = 42/204 (20%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ E + +F +YG + V+ + +GFV+ E+ ++ A++ELN
Sbjct: 303 VFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELN 362
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ +N+K + +AA +G N +++ NL D
Sbjct: 363 GKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQN-----LYLKNLDDGITD 417
Query: 129 PEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180
++RELF +G + C I+R+ GFV + + ++ + E+NG M+ GKP+ V
Sbjct: 418 DQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVA 477
Query: 181 ISTSRVRQRPGVDEVVIGQKSVPV 204
+ + ++ + + VP+
Sbjct: 478 FAQRKEERKAMLQAQFSQMRPVPM 501
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 77/166 (46%), Gaps = 25/166 (15%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G++ + + LF + G+VV V ++ Y +V+ N + A+
Sbjct: 121 TTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAM 180
Query: 87 KELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
+ LN +N KP+++ + ++ R G + +F+ NL + + F +G +
Sbjct: 181 EALNFAPLNNKPIRVMYSNRDPSSRRSG----SANIFIKNLDKTIDNKTLHDTFSAFGAI 236
Query: 142 VECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
+ C + + +GFV + + +K LNGM+++ KP+ V
Sbjct: 237 LSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYV 282
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 163
PTT ++VG+L N ++ ELF G VV + R+ Y +V+ +P D +
Sbjct: 120 PTTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARA 179
Query: 164 IKELNGMMVDGKPMKVQIS 182
++ LN ++ KP++V S
Sbjct: 180 MEALNFAPLNNKPIRVMYS 198
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 27/185 (14%)
Query: 22 ISCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------K 69
+ CR M P G+ IFI N++P + + F +GKV+ C V K
Sbjct: 121 VRCRLMWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFSSFGKVLSCKVATDENGNSK 180
Query: 70 NYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNL 122
+GFVH E+DE + AI+ +NG ++N + + + ++K + T VFV N
Sbjct: 181 GFGFVHYESDEAAQAAIENINGMLLNGREIYVGPHLAKKDRESRFQEMIKNYTNVFVKNF 240
Query: 123 SDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDG 174
+ E+RELF YG + + + +GFV+ + D K ++ LN G
Sbjct: 241 DTESTEDELRELFESYGPITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEALNDKEYKG 300
Query: 175 KPMKV 179
KP+ V
Sbjct: 301 KPLYV 305
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N + ++ + +R LFE YG + + K +GFV+ ++ A++ LN
Sbjct: 235 VFVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEALN 294
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ KPL K EA K + +F+ NL ++ + E
Sbjct: 295 DKEYKGKPLYVGRAQKKNERVHELTKKYEADRLEKLQKYQSVNLFIKNLDESIDDARLEE 354
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ R +GFV + +P + K I E+N MV KP+ V ++ +
Sbjct: 355 EFKPFGTITSAKVMLDENGKSRGFGFVCLSTPEEATKAISEMNQRMVANKPLYVALAQPK 414
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R + + + + + +Q
Sbjct: 415 AIRRSQLAQQIQARNQMRMQ 434
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + + F G V V ++ YG+V+ + G A++EL
Sbjct: 54 LYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERALEEL 113
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N + K ++ S++ P+ + + +F+ NL + + F +G V+ C +
Sbjct: 114 NYAEI--KGVRCRLMWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFSSFGKVLSCKV 171
Query: 147 V-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 179
+ +GFVH +S + + I+ +NGM+++G+ + V
Sbjct: 172 ATDENGNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYV 212
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 24/177 (13%)
Query: 23 SCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KN 70
+CR M P G IFI N++ + + F +G ++ C VV K
Sbjct: 78 ACRIMWSQRDPSLRKSGVGNIFIKNLDKSVDHKALFDTFSAFGNILSCKVVTDETNVSKG 137
Query: 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK----GPNTPTTKVFVGNLSDNT 126
+GFVH E+ + AI ++NG I+N++ + + S K T V+V NLS++
Sbjct: 138 FGFVHYESQDSADKAIMKVNGMIINDQKVFVGPFKSSKERGQTQELKYTNVYVKNLSEDV 197
Query: 127 RAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGK 175
E+R+L VPYG + I+ + +GF + ++PD K C++ NG + GK
Sbjct: 198 NEEELRDLLVPYGKITNLTIMSDEKSKSKGFGFANFETPDEAKNCVEAENGKLFHGK 254
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 85/183 (46%), Gaps = 36/183 (19%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ + E +R L YGK+ ++ K +GF + E +E + ++ N
Sbjct: 188 VYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKSKSKGFGFANFETPDEAKNCVEAEN 247
Query: 91 GQIVN---------------EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
G++ + E LK + T +G N +++ N+ D+ + ++R F
Sbjct: 248 GKLFHGKVIYVGRAQKKMEREAELKHKFETKYQGVN-----LYIKNIDDSIDSDKLRSTF 302
Query: 136 VPYGTVVECDIVRN--------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
YGT+ ++R+ +GFV +PD +K + E++G MV KP+ V + +
Sbjct: 303 AAYGTITSAKVMRDDKSTSSKGFGFVCYTTPDEASKAVAEMHGRMVGNKPLYVAFAQRKE 362
Query: 187 RQR 189
+R
Sbjct: 363 IRR 365
>gi|351697058|gb|EHA99976.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 187
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGK +E DV+KNYGFVHME++ AI L+ ++
Sbjct: 3 KLFIGNLPREATGQEIRSLFEQYGKALEYDVIKNYGFVHMEDETAAEDAIHNLHRYELHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ +EA+ K +TK+ VGN+S E++ YG +ECD+
Sbjct: 63 VNINVEAS---KNKGKASTKLHVGNVSPTCTNKELKGKCAEYGPFMECDM 109
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 174
K+F+GNL E+R LF YG +E D+++NYGFVH+ D I L+ + G
Sbjct: 3 KLFIGNLPREATGQEIRSLFEQYGKALEYDVIKNYGFVHMEDETAAEDAIHNLHRYELHG 62
Query: 175 KPMKVQISTSR 185
+ V+ S ++
Sbjct: 63 VNINVEASKNK 73
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P GT IFI N++ + + F +G ++ C + K YGFV +++E
Sbjct: 113 PSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDSEE 172
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
+ AI +LNG ++N+K + + ++ +K V+V NLS++T E+ + F
Sbjct: 173 SAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMKFF 232
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
YGT+ I+R+ +GFV+ ++P D K ++ LNG VD K V
Sbjct: 233 GEYGTITSAVIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKVDDKEWYV 284
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 92/184 (50%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ E + F +YG + ++++ +GFV+ EN ++ A++ LN
Sbjct: 214 VYVKNLSESTTDEELMKFFGEYGTITSAVIMRDADGKSRCFGFVNFENPDDAAKAVEGLN 273
Query: 91 GQIVNEKPLKIEAATSR-------KGPNTPTTK----------VFVGNLSDNTRAPEVRE 133
G+ V++K + A + KG + K +++ NL D +++E
Sbjct: 274 GKKVDDKEWYVGKAQKKSEREQELKGRFEQSIKESADKYQGVNLYLKNLDDTISDEKLKE 333
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+F YGT+ C ++R+ GFV +P + ++ + E+NG M+ GKP+ V ++ +
Sbjct: 334 MFAEYGTITSCKVMRDPTGIGRGSGFVAFSTPEEASRALGEMNGKMIAGKPLYVALAQRK 393
Query: 186 VRQR 189
+R
Sbjct: 394 EDRR 397
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTR 127
YG+V+ N ++ A+ LN +N +P++I S + P+ + T +F+ NL
Sbjct: 76 YGYVNFSNPQDAARALDVLNFTPLNNRPIRI--MYSHRDPSLRKSGTANIFIKNLDKAID 133
Query: 128 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
+ + F +G ++ C I + YGFV DS + I +LNGM+++ K
Sbjct: 134 HKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDSEESAQNAIDKLNGMLINDK 189
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 27/184 (14%)
Query: 23 SCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KN 70
+CR M P G+ IFI N++P + + F +GK++ C + K
Sbjct: 117 ACRIMWSQRDPSLRRNGSGNIFIKNLHPAIDNKTLHDTFSAFGKILSCKIATDENGNSKG 176
Query: 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLS 123
+GFVH E E + AI+ +NG ++N+ + + ++K + T V+V N++
Sbjct: 177 FGFVHYEESESAKAAIENVNGMLLNDHEVYVGPHLAKKDRQSKMRELIANFTNVYVKNIN 236
Query: 124 DNTRAPEVRELFVPYGTVV-------ECDIVRNYGFVHID-SPDINKCIKELNGMMVDGK 175
N ++RE F P+GT+ E R +GFV+ + D K ++ELN +DG+
Sbjct: 237 LNWDEDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDAVKAVEELNNKDIDGQ 296
Query: 176 PMKV 179
+ V
Sbjct: 297 KLYV 300
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVV-------ECDVVKNYGFVHMENDEEGRTAIKELN 90
+++ N+N + +R F +G + E + +GFV+ E E+ A++ELN
Sbjct: 230 VYVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDAVKAVEELN 289
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ ++ + L + EAA + +FV NL D+ ++ E
Sbjct: 290 NKDIDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSIDDAKLEE 349
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F PYGT+ ++ + +GFV SP + K I E++ MV GKP+ V ++ +
Sbjct: 350 EFKPYGTITSAKVMLDDAGKSKGFGFVCYSSPEEATKAITEMHQRMVAGKPLYVALAQRK 409
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R + + + + + +Q
Sbjct: 410 EVRRSQLSQQIQARNQMRMQ 429
>gi|341904482|gb|EGT60315.1| hypothetical protein CAEBREN_31415 [Caenorhabditis brenneri]
Length = 302
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 55/78 (70%)
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDG 174
+K+FVGNL DN + +++++F P+ V ECDIV+NY FVHI+ D++ I L G ++G
Sbjct: 3 SKLFVGNLPDNVDSNKLKQIFQPFCKVTECDIVKNYAFVHIEEDDVDSIITRLTGYTIEG 62
Query: 175 KPMKVQISTSRVRQRPGV 192
K + ++ STS++R PG+
Sbjct: 63 KVVNIKKSTSKLRPTPGM 80
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN+ ++ +F+ + KV ECD+VKNY FVH+E D+ + I L G +
Sbjct: 4 KLFVGNLPDNVDSNKLKQIFQPFCKVTECDIVKNYAFVHIEEDDVD-SIITRLTGYTIEG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPE 130
K + I+ +TS+ P SD R P+
Sbjct: 63 KVVNIKKSTSKLRPTPGMPNRCFRCQSDEHRTPQ 96
>gi|341882941|gb|EGT38876.1| hypothetical protein CAEBREN_01889 [Caenorhabditis brenneri]
Length = 302
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 55/78 (70%)
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDG 174
+K+FVGNL DN + +++++F P+ V ECDIV+NY FVHI+ D++ I L G ++G
Sbjct: 3 SKLFVGNLPDNVDSNKLKQIFQPFCKVTECDIVKNYAFVHIEEDDVDSIITRLTGYTIEG 62
Query: 175 KPMKVQISTSRVRQRPGV 192
K + ++ STS++R PG+
Sbjct: 63 KVVNIKKSTSKLRPTPGM 80
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN+ ++ +F+ + KV ECD+VKNY FVH+E D+ + I L G +
Sbjct: 4 KLFVGNLPDNVDSNKLKQIFQPFCKVTECDIVKNYAFVHIEEDDVD-SIITRLTGYTIEG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPE 130
K + I+ +TS+ P SD R P+
Sbjct: 63 KVVNIKKSTSKLRPTPGMPNRCFRCQSDEHRTPQ 96
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 31/182 (17%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I +S R+ P G +FI N++ + ++ F +G V+ C V K Y
Sbjct: 105 RIMVSHRD-PSMRKSGHANVFIKNLDTSIDNKALQETFASFGSVLSCKVAVDNNGQSKGY 163
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPL----------KIEAATSRKGPNTPTTKVFVGN 121
GFV EN+E ++AI LNG ++N+K + +IEA S K T V+V N
Sbjct: 164 GFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQERIEATGSPK-----FTNVYVKN 218
Query: 122 LSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVD 173
LS+ T ++++ F YG + ++++ +GFV+ SPD +++LNG +
Sbjct: 219 LSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFN 278
Query: 174 GK 175
K
Sbjct: 279 DK 280
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 95/209 (45%), Gaps = 39/209 (18%)
Query: 10 VKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 69
V V R+ +Q I P F++V ++ N++ TS E ++ F YG + V+K
Sbjct: 191 VFVGRFVRHQERIEATGSPKFTNV-----YVKNLSETTSDEDLKKFFSNYGAITSAIVMK 245
Query: 70 N-------YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK------ 116
+ +GFV+ ++ + A+++LNG N+K + A RKG K
Sbjct: 246 DQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRA-QRKGEREAELKARFEQE 304
Query: 117 ------------VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS 157
+++ NL D +++ELF +G++ C ++ + GFV +
Sbjct: 305 RNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFST 364
Query: 158 P-DINKCIKELNGMMVDGKPMKVQISTSR 185
P + ++ + +NG M+ KP+ V ++ R
Sbjct: 365 PEEASRALNGMNGKMIGKKPLYVAVAQRR 393
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ E ++ LF ++G + C V+ K GFV EE A+ +N
Sbjct: 317 LYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMN 376
Query: 91 GQIVNEKPLKIEAATSRK 108
G+++ +KPL + A R+
Sbjct: 377 GKMIGKKPLYVAVAQRRE 394
>gi|268557402|ref|XP_002636690.1| C. briggsae CBR-RNP-1 protein [Caenorhabditis briggsae]
Length = 297
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 55/78 (70%)
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDG 174
+K+FVGNL DN + +++++F P+ V ECDIV+NY FVHI+ D++ I L G ++G
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEEDDVDSIITRLTGYTIEG 62
Query: 175 KPMKVQISTSRVRQRPGV 192
K + ++ STS++R PG+
Sbjct: 63 KVVNIKKSTSKLRPTPGM 80
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN+ ++ +F+ + KV ECD+VKNY FVH+E D+ + I L G +
Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEEDDVD-SIITRLTGYTIEG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
K + I+ +TS+ P SD+ R P ++ + V+N G + ID
Sbjct: 63 KVVNIKKSTSKLRPTPGMPNRCFRCQSDDHRTPCPQD---------PSNSVKNDGIIKID 113
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 87/168 (51%), Gaps = 20/168 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G+ IFI N++ + + F +G ++ C V K +GFV E +E
Sbjct: 202 PSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEE 261
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
++A+K LNG ++N+KP+ + ++ + + K VFV NLS++T ++ ++F
Sbjct: 262 SAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVF 321
Query: 136 VPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGK 175
YGT+ ++ R +GFV+ +SP D + ++ELNG ++ K
Sbjct: 322 SEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNGKKINDK 369
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 95/204 (46%), Gaps = 42/204 (20%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ E + +F +YG + V+ + +GFV+ E+ ++ A++ELN
Sbjct: 303 VFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELN 362
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ +N+K + +AA +G N +++ NL D
Sbjct: 363 GKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQN-----LYLKNLDDGITD 417
Query: 129 PEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180
++RELF +G + C I+R+ GFV + + ++ + E+NG M+ GKP+ V
Sbjct: 418 DQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVA 477
Query: 181 ISTSRVRQRPGVDEVVIGQKSVPV 204
+ + ++ + + VP+
Sbjct: 478 FAQRKEERKAMLQAQFSQMRPVPM 501
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 77/166 (46%), Gaps = 25/166 (15%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G++ + + LF + G+VV V ++ Y +V+ N + A+
Sbjct: 121 TTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAM 180
Query: 87 KELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
+ LN +N KP+++ + ++ R G + +F+ NL + + F +G +
Sbjct: 181 EALNFAPLNNKPIRVMYSNRDPSSRRSG----SANIFIKNLDKTIDNKTLHDTFSAFGAI 236
Query: 142 VECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
+ C + + +GFV + + +K LNGM+++ KP+ V
Sbjct: 237 LSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYV 282
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 163
PTT ++VG+L N ++ ELF G VV + R+ Y +V+ +P D +
Sbjct: 120 PTTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARA 179
Query: 164 IKELNGMMVDGKPMKVQIS 182
++ LN ++ KP++V S
Sbjct: 180 MEALNFAPLNNKPIRVMYS 198
>gi|291231291|ref|XP_002735598.1| PREDICTED: RNA binding motif protein 4B-like isoform 1
[Saccoglossus kowalevskii]
Length = 238
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 172
TKVFVGNLS + ++ ++R+LF YG V+ECD+++NYGFVH+D D K + LN
Sbjct: 8 ATKVFVGNLSKSVQSRDLRDLFEKYGKVLECDVIKNYGFVHMDKEDEAKEALDALNSKEF 67
Query: 173 DGKPMKVQISTSRVRQRPGV 192
G +KV++STSRV + PG+
Sbjct: 68 MGTNIKVELSTSRVHKTPGM 87
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 50/71 (70%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN++ +R LFEKYGKV+ECDV+KNYGFVHM+ ++E + A+ LN +
Sbjct: 10 KVFVGNLSKSVQSRDLRDLFEKYGKVLECDVIKNYGFVHMDKEDEAKEALDALNSKEFMG 69
Query: 97 KPLKIEAATSR 107
+K+E +TSR
Sbjct: 70 TNIKVELSTSR 80
>gi|397517067|ref|XP_003828741.1| PREDICTED: RNA-binding protein 14 isoform 7 [Pan paniscus]
gi|426369339|ref|XP_004051650.1| PREDICTED: RNA-binding protein 14 isoform 6 [Gorilla gorilla
gorilla]
Length = 129
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 67/117 (57%), Gaps = 5/117 (4%)
Query: 36 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G +
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60
Query: 95 NE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY 150
+ L +E SR P T K+FVGN+S + E+R LF G V+ECD+V+ Y
Sbjct: 61 RPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKGY 114
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 29/37 (78%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK Y
Sbjct: 78 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKGY 114
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 116 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGM-MV 172
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 173 DGKPMKVQISTSR 185
G+ + V++S R
Sbjct: 62 PGRALVVEMSRPR 74
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 31/182 (17%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I +S R+ P G +FI N++ + ++ F +G V+ C V K Y
Sbjct: 95 RIMVSHRD-PSMRKSGHANVFIKNLDTSIDNKALQETFASFGPVLSCKVAVDNNGQSKGY 153
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPL----------KIEAATSRKGPNTPTTKVFVGN 121
GFV EN+E ++AI LNG ++N+K + +IEA S K T V+V N
Sbjct: 154 GFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQERIEATGSPK-----FTNVYVKN 208
Query: 122 LSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVD 173
LS+ T ++++ F YG++ ++++ +GFV+ SPD +++LNG +
Sbjct: 209 LSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFN 268
Query: 174 GK 175
K
Sbjct: 269 DK 270
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 95/209 (45%), Gaps = 39/209 (18%)
Query: 10 VKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 69
V V R+ +Q I P F++V ++ N++ TS E ++ F YG + V+K
Sbjct: 181 VFVGRFVRHQERIEATGSPKFTNV-----YVKNLSETTSDEDLKKFFSNYGSITSAIVMK 235
Query: 70 N-------YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK------ 116
+ +GFV+ ++ + A+++LNG N+K + A RKG K
Sbjct: 236 DQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRA-QRKGEREAELKARFEQE 294
Query: 117 ------------VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS 157
+++ NL D +++ELF +G++ C ++ + GFV +
Sbjct: 295 RNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFST 354
Query: 158 P-DINKCIKELNGMMVDGKPMKVQISTSR 185
P + ++ + +NG M+ KP+ V ++ R
Sbjct: 355 PEEASRALNGMNGKMIGKKPLYVAVAQRR 383
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ E ++ LF ++G + C V+ K GFV EE A+ +N
Sbjct: 307 LYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMN 366
Query: 91 GQIVNEKPLKIEAATSRK 108
G+++ +KPL + A R+
Sbjct: 367 GKMIGKKPLYVAVAQRRE 384
>gi|195037090|ref|XP_001989998.1| GH19101 [Drosophila grimshawi]
gi|193894194|gb|EDV93060.1| GH19101 [Drosophila grimshawi]
Length = 476
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 22/169 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S EL+ LF K G V C +++ Y F+ N + TA+ +N +
Sbjct: 9 LYVGNLDGTVSEELLVALFGKMGPVKSCKIIREPGNDPYAFIEYSNYQAASTALTAMNKR 68
Query: 93 IVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ +K +K+ ATS NTP T +FVG+LS +RE F P+G + C I
Sbjct: 69 VFLDKEIKVNWATSPG--NTPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRI 126
Query: 147 VRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
VR+ Y FV + + I+ +NG + + ++ ST ++
Sbjct: 127 VRDPQTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKL 175
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G+++P E +R F +G++ C +V K Y FV E AI+ +
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKAEAENAIQAM 156
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTTK 116
NGQ + + ++ +T + P ++K
Sbjct: 157 NGQWIGSRSIRTNWSTRKLPPPRESSK 183
>gi|308504357|ref|XP_003114362.1| CRE-RNP-1 protein [Caenorhabditis remanei]
gi|308261747|gb|EFP05700.1| CRE-RNP-1 protein [Caenorhabditis remanei]
Length = 304
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 55/78 (70%)
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDG 174
+K+FVGNL DN + +++++F P+ V ECDIV+NY FVHI+ D++ I L G ++G
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEEDDVDSIITRLTGYSIEG 62
Query: 175 KPMKVQISTSRVRQRPGV 192
K + ++ STS++R PG+
Sbjct: 63 KVVNIKKSTSKLRPTPGM 80
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN+ ++ +F+ + KV ECD+VKNY FVH+E D+ + I L G +
Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEEDDVD-SIITRLTGYSIEG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPE 130
K + I+ +TS+ P SD+ R P+
Sbjct: 63 KVVNIKKSTSKLRPTPGMPNRCFRCQSDDHRTPQ 96
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D+ ++R++
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGDDMDEEKLRDV 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F YG + ++ R +GFV + D K + E+NG ++GKP+ V + +V
Sbjct: 211 FNKYGNAMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E +R +F KYG + V+ + +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKI---------EAATSRKGPNTPTTK--------VFVGNLSDNTRAPEVRE 133
G+ +N KP+ + +A RK + ++V NL D +R+
Sbjct: 253 GKEMNGKPIYVGRAQKKVERQAELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMLEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV KPL + A ++ T ++ ++
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQYMQRMA 387
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D ++REL
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLREL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F YG + ++ R +GFV + D K + E+NG ++GK M V + +V
Sbjct: 211 FSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E +R LF KYG + V+ + +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D ++REL
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLREL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F YG + ++ R +GFV + D K + E+NG ++GK M V + +V
Sbjct: 211 FSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E +R LF KYG + V+ + +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV KPL + A ++ T ++ ++
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQYMQRMA 387
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ + + ++ +F KYG + V+++ +GFV+ EN + A++ELN
Sbjct: 216 VYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELN 275
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+I N+K L K E T +++ NL +N ++RE
Sbjct: 276 GKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRE 335
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF YG + C ++R+ GFV S D N+ + E+NG MV KP+ V ++ +
Sbjct: 336 LFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRK 395
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P GT IFI N++ + + F +G ++ C + + YGFV E DE
Sbjct: 115 PSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDE 174
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVRELF 135
++AI +LNG ++N+K + + ++ N + V+V NLSD E++E+F
Sbjct: 175 SAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMF 234
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
YGT+ ++R+ +GFV+ ++ D + ++ELNG + + K + V
Sbjct: 235 GKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYV 286
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY-------GFVHMENDEEGRTAIKELN 90
+++ N+ E +R LF +YG + C V+++ GFV ++ E+ A+ E+N
Sbjct: 319 LYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMN 378
Query: 91 GQIVNEKPLKIEAATSRK 108
G++V KPL + A ++
Sbjct: 379 GKMVGSKPLYVALAQRKE 396
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ + + ++ +F KYG + V+++ +GFV+ EN + A++ELN
Sbjct: 216 VYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELN 275
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+I N+K L K E T +++ NL +N ++RE
Sbjct: 276 GKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRE 335
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF YG + C ++R+ GFV S D N+ + E+NG MV KP+ V ++ +
Sbjct: 336 LFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRK 395
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P GT IFI N++ + + F +G ++ C + + YGFV E DE
Sbjct: 115 PSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDE 174
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVRELF 135
++AI +LNG ++N+K + + ++ N + V+V NLSD E++E+F
Sbjct: 175 SAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMF 234
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
YGT+ ++R+ +GFV+ ++ D + ++ELNG + + K + V
Sbjct: 235 GKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYV 286
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY-------GFVHMENDEEGRTAIKELN 90
+++ N+ E +R LF +YG + C V+++ GFV ++ E+ A+ E+N
Sbjct: 319 LYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMN 378
Query: 91 GQIVNEKPLKIEAATSRK 108
G++V KPL + A ++
Sbjct: 379 GKMVGSKPLYVALAQRKE 396
>gi|195400098|ref|XP_002058655.1| GJ14540 [Drosophila virilis]
gi|194142215|gb|EDW58623.1| GJ14540 [Drosophila virilis]
Length = 472
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 22/169 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S +L+ LF K G V C +++ Y F+ N + TA+ +N +
Sbjct: 9 LYVGNLDGSVSEDLLIALFGKMGPVKSCKIIREPGNDPYAFIEYSNYQAASTALTAMNKR 68
Query: 93 IVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ +K +K+ ATS NTP T +FVG+LS +RE F P+G + C I
Sbjct: 69 VFLDKEIKVNWATSPG--NTPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRI 126
Query: 147 VRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
VR+ Y FV + + I+ +NG + + ++ ST ++
Sbjct: 127 VRDPQTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKL 175
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G+++P E +R F +G++ C +V K Y FV E AI+ +
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKAEAENAIQAM 156
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTTK 116
NGQ + + ++ +T + P ++K
Sbjct: 157 NGQWIGSRSIRTNWSTRKLPPPRESSK 183
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 20/168 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P GT IFI N++ + + F +G ++ C V K YGFV E DE
Sbjct: 114 PSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDASGESKGYGFVQYERDE 173
Query: 81 EGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
AI++LNG ++N+K P + N VFV NLS+ T ++RE+F
Sbjct: 174 AAHAAIEKLNGMLMNDKKVYVGPFIRKQERDNSPGNVKFNNVFVKNLSETTTEDDLREIF 233
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
+GT+ ++R +GFV+ +SPD +++LNG D K
Sbjct: 234 GKFGTITSVVVMREGDGRSKCFGFVNFESPDEAALAVQDLNGKKFDDK 281
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ + +R +F K+G + V++ +GFV+ E+ +E A+++LN
Sbjct: 215 VFVKNLSETTTEDDLREIFGKFGTITSVVVMREGDGRSKCFGFVNFESPDEAALAVQDLN 274
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++K K E T +++ NL D ++RE
Sbjct: 275 GKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQETADKYQNTNLYLKNLDDTVDDEKLRE 334
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF +G + C ++R+ GFV S D ++ + E+N MV KP+ V ++ +
Sbjct: 335 LFAEFGAITSCKVMRDSNGASRGSGFVAFKSAEDASRALAEMNNKMVGSKPLYVALAQRK 394
Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY-------GFVHMENDEEGRTAIKELN 90
+++ N++ E +R LF ++G + C V+++ GFV ++ E+ A+ E+N
Sbjct: 318 LYLKNLDDTVDDEKLRELFAEFGAITSCKVMRDSNGASRGSGFVAFKSAEDASRALAEMN 377
Query: 91 GQIVNEKPLKIEAATSRK 108
++V KPL + A ++
Sbjct: 378 NKMVGSKPLYVALAQRKE 395
Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 163
P T ++VG+L + + ++ ++F G VV + R+ Y +V+ ++P D +
Sbjct: 32 PATSLYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAARA 91
Query: 164 IKELNGMMVDGKPMKVQIS 182
++ LN ++G+P+++ S
Sbjct: 92 LEMLNFTPINGRPIRIMYS 110
>gi|195110141|ref|XP_001999640.1| GI22960 [Drosophila mojavensis]
gi|193916234|gb|EDW15101.1| GI22960 [Drosophila mojavensis]
Length = 475
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 22/169 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S +L+ LF K G V C +++ Y F+ N + TA+ +N +
Sbjct: 9 LYVGNLDSSVSEDLLIALFGKMGPVKSCKIIREPGNDPYAFIEYSNYQAASTALTAMNKR 68
Query: 93 IVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ +K +K+ ATS NTP T +FVG+LS +RE F P+G + C I
Sbjct: 69 VFLDKEIKVNWATSPG--NTPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRI 126
Query: 147 VRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
VR+ Y FV + + I+ +NG + + ++ ST ++
Sbjct: 127 VRDPHTMKSKGYAFVSFVKKAEAENAIQSMNGQWIGSRNIRTNWSTRKL 175
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G+++P E +R F +G++ C +V K Y FV E AI+ +
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQSM 156
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTTK 116
NGQ + + ++ +T + P ++K
Sbjct: 157 NGQWIGSRNIRTNWSTRKLPPPRESSK 183
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
I++ N+N T+ E LF KYGKV+ + +K +GFV EN E+ A++ELN
Sbjct: 223 IYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFENHEDAAKAVEELN 282
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G ++ L + EA+ K +F+ NL D+ +++E
Sbjct: 283 GSQFKDQELFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFIKNLDDSIDDEKLKE 342
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F PYG + ++R +GFV +P + K I E N +V GKP+ V I+ +
Sbjct: 343 EFAPYGNITSVRVMRTENGKSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 402
Query: 186 VRQR 189
+R
Sbjct: 403 DVRR 406
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 27/173 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G+ IFI N++ + + F +G ++ + K +
Sbjct: 111 CRIMWSQRDPALRKKGSANIFIKNLHSDIDNKALYDTFSVFGNILSSKIATDETGKSKGF 170
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E+D + AI LNG ++N + + + SRK ++ T ++V N++
Sbjct: 171 GFVHFEDDTAAKEAIDALNGMLLNGQEIFVGPHLSRKERDSQLEESKANFTNIYVKNINL 230
Query: 125 NTRAPEVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNG 169
T E ELF YG V+ + ++ +GFV ++ D K ++ELNG
Sbjct: 231 ETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFENHEDAAKAVEELNG 283
>gi|334347620|ref|XP_001379260.2| PREDICTED: RNA-binding protein 14 [Monodelphis domestica]
Length = 636
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 53/75 (70%), Gaps = 2/75 (2%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEK 97
IF+GNV+ + + +R LFE++G V+ECDVVK+Y FVHME + + + AI++LNG+ V K
Sbjct: 42 IFVGNVSAACTSQELRSLFERHGPVIECDVVKDYAFVHMEKEADAKAAIEQLNGKEVKGK 101
Query: 98 PLKIEAAT--SRKGP 110
+ +E + +KGP
Sbjct: 102 RINVELSIKGQKKGP 116
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 117 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGK 175
+FVGN+S + E+R LF +G V+ECD+V++Y FVH++ D I++LNG V GK
Sbjct: 42 IFVGNVSAACTSQELRSLFERHGPVIECDVVKDYAFVHMEKEADAKAAIEQLNGKEVKGK 101
Query: 176 PMKVQISTSRVRQRPG 191
+ V++S ++ P
Sbjct: 102 RINVELSIKGQKKGPA 117
>gi|308480880|ref|XP_003102646.1| hypothetical protein CRE_03259 [Caenorhabditis remanei]
gi|308261080|gb|EFP05033.1| hypothetical protein CRE_03259 [Caenorhabditis remanei]
Length = 358
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 34/185 (18%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
F +F+G+++ S EL++ F+KYG+V E V+ K YGFV N + AI
Sbjct: 133 FHVFVGDLSKDVSNELLKSTFQKYGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAENAIA 192
Query: 88 ELNGQIVNEKPLKIEAAT------------------SRKGPNTPTTKVFVGNLSDNTRAP 129
+NG+ + ++ ++ A S K N T V+VGN+S T
Sbjct: 193 GMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADN---TSVYVGNISQQTTET 249
Query: 130 EVRELFVPYGTVVECDIVRN--YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
++RE F YG + E + + Y FV D + K I E+NG + G +V+ S R
Sbjct: 250 DLRESFSTYGDIAEVRVFKTQRYAFVRYDKKECATKAIMEMNGKELTGN--QVRCSWGRT 307
Query: 187 RQRPG 191
+ P
Sbjct: 308 QAVPS 312
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 100/206 (48%), Gaps = 42/206 (20%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ E + F ++G + V+++ +GFV+ EN ++ A+ LN
Sbjct: 210 VFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLN 269
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G++V++K + EAA +G N +++ NL D+
Sbjct: 270 GKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGAN-----LYIKNLDDSIGD 324
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQ 180
+++ELF P+GT+ C ++R+ GFV +PD ++ + E+NG MV KP+ V
Sbjct: 325 DKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLYVA 384
Query: 181 ISTSRVRQRPGVDEVVIGQKSVPVQA 206
++ + +R + +SVP+ A
Sbjct: 385 LAQRKEDRRARLQAQFSQIRSVPMPA 410
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C V K YGFV +N+E
Sbjct: 109 PSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEE 168
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
AI++LNG ++N+K + + ++ + K VFV NLS+ T ++ + F
Sbjct: 169 SALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAF 228
Query: 136 VPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
+GT+ ++R+ +GFV+ + + D + + LNG +VD K V
Sbjct: 229 SEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYV 280
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 81/164 (49%), Gaps = 21/164 (12%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G+++ + + +F + G+VV V ++ YG+V+ N ++ A+
Sbjct: 28 TTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARAL 87
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
LN +N KP+++ S + P+ + +F+ NL + + F +G+++
Sbjct: 88 DVLNFTPLNGKPIRV--MYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILS 145
Query: 144 CDIV-------RNYGFVHIDSPDIN-KCIKELNGMMVDGKPMKV 179
C + + YGFV D+ + K I++LNGM+++ K + V
Sbjct: 146 CKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYV 189
Score = 39.3 bits (90), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 159
G N TT ++VG+L N ++ ++F G VV + R+ YG+V+ +P D
Sbjct: 23 GANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQD 82
Query: 160 INKCIKELNGMMVDGKPMKVQIS 182
+ + LN ++GKP++V S
Sbjct: 83 AARALDVLNFTPLNGKPIRVMYS 105
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 95/184 (51%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ T+ + ++ +F ++GK+ V+K+ +GFV+ EN ++ A++ LN
Sbjct: 221 VYVKNLAESTTDDDLKNIFGEFGKITSAVVMKDGEGKPKGFGFVNFENADDAAKAVESLN 280
Query: 91 GQIVNEKP---------------LKIEAATSRK--GPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++K LK++ S K ++ ++V NL D+ +++E
Sbjct: 281 GKTFDDKEWFVGRAQKKSEREMELKVQYEQSLKEAADKFQSSNLYVKNLDDSVSDEKLKE 340
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF PYGTV C ++R+ GFV +P + K + E++G M++ KP+ V ++ +
Sbjct: 341 LFTPYGTVTSCKVMRDPNGMSRGSGFVAFSTPEEATKAMSEMSGKMIENKPLYVAVAQRK 400
Query: 186 VRQR 189
+R
Sbjct: 401 EDRR 404
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 20/168 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C V K YGFV E +E
Sbjct: 120 PSVRRSGAGNIFIKNLDKSIDHKALHDTFSVFGNIISCKVAVDSSGQSKGYGFVQYETEE 179
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVRELF 135
+ A+ +LNG ++N+K + + R+ G T T V+V NL+++T +++ +F
Sbjct: 180 SAQKAMGQLNGMLLNDKQVYVGPFLRRQERDSTGNKTIFTNVYVKNLAESTTDDDLKNIF 239
Query: 136 VPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 175
+G + ++++ +GFV+ + + D K ++ LNG D K
Sbjct: 240 GEFGKITSAVVMKDGEGKPKGFGFVNFENADDAAKAVESLNGKTFDDK 287
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 82/164 (50%), Gaps = 21/164 (12%)
Query: 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEG 82
+ GT +++G+++P + + F + G+VV V ++ YG+V+ + ++
Sbjct: 35 AQFGTTSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDA 94
Query: 83 RTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYG 139
AI+ELN +N KP+++ S + P+ + +F+ NL + + + F +G
Sbjct: 95 ARAIQELNYIPLNGKPVRV--MYSHRDPSVRRSGAGNIFIKNLDKSIDHKALHDTFSVFG 152
Query: 140 TVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
++ C + + YGFV ++ + K + +LNGM+++ K
Sbjct: 153 NIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDK 196
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCI 164
TT ++VG+L N ++ + F G VV + R+ YG+V+ SP D + I
Sbjct: 39 TTSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAI 98
Query: 165 KELNGMMVDGKPMKVQIS 182
+ELN + ++GKP++V S
Sbjct: 99 QELNYIPLNGKPVRVMYS 116
>gi|195445204|ref|XP_002070221.1| GK11939 [Drosophila willistoni]
gi|194166306|gb|EDW81207.1| GK11939 [Drosophila willistoni]
Length = 469
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 22/169 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S +L+ LF K G V C +++ Y F+ N + TA+ +N +
Sbjct: 9 LYVGNLDGSVSEDLLIALFGKMGPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKR 68
Query: 93 IVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ EK +K+ ATS N P T +FVG+LS +RE F P+G + C I
Sbjct: 69 VFLEKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRI 126
Query: 147 VRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
VR+ Y FV + + I+ +NG + + ++ ST ++
Sbjct: 127 VRDPQTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKL 175
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G+++P E +R F +G++ C +V K Y FV E AI+ +
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKAEAENAIQAM 156
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTTKV 117
NGQ + + ++ +T + P +TK
Sbjct: 157 NGQWIGSRSIRTNWSTRKLPPPRESTKA 184
>gi|291231293|ref|XP_002735599.1| PREDICTED: RNA binding motif protein 4B-like isoform 2
[Saccoglossus kowalevskii]
Length = 237
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 172
TKVFVGNLS + ++ ++R+LF YG V+ECD+++NYGFVH+D D K + LN
Sbjct: 8 ATKVFVGNLSKSVQSRDLRDLFEKYGKVLECDVIKNYGFVHMDKEDEAKEALDALNSKEF 67
Query: 173 DGKPMKVQISTSRVRQRPGV 192
G +KV++STSRV + PG+
Sbjct: 68 MGTNIKVELSTSRVHKTPGM 87
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 50/71 (70%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN++ +R LFEKYGKV+ECDV+KNYGFVHM+ ++E + A+ LN +
Sbjct: 10 KVFVGNLSKSVQSRDLRDLFEKYGKVLECDVIKNYGFVHMDKEDEAKEALDALNSKEFMG 69
Query: 97 KPLKIEAATSR 107
+K+E +TSR
Sbjct: 70 TNIKVELSTSR 80
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 20/166 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G V+ C V K YGFV +N+E
Sbjct: 115 PSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEE 174
Query: 81 EGRTAIKELNGQIVNEKP----LKIEAATSRKGPNTPT-TKVFVGNLSDNTRAPEVRELF 135
+ AIK LNG ++N+K L I + +P T V+V NLS+ ++++LF
Sbjct: 175 AAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDLKKLF 234
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVD 173
PYGT+ ++++ +GFV+ +PD ++ LNG ++
Sbjct: 235 GPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTIN 280
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 83/181 (45%), Gaps = 33/181 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ + E ++ LF YG + V+K+ +GFV+ +N + A++ LN
Sbjct: 216 VYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLN 275
Query: 91 GQIVN------------------EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G +N E KIE + +++ NL D+ +++
Sbjct: 276 GTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLK 335
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTS 184
+LF +GT+ C ++ + GFV +P + +K + E+NG ++ KP+ V ++
Sbjct: 336 DLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQR 395
Query: 185 R 185
+
Sbjct: 396 K 396
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ S E ++ LF ++G + C V+ K GFV EE A+ E+N
Sbjct: 320 LYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMN 379
Query: 91 GQIVNEKPLKIEAATSRK 108
G+++ KPL + A ++
Sbjct: 380 GKLIGRKPLYVAVAQRKE 397
>gi|449501704|ref|XP_004161443.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
2-like [Cucumis sativus]
Length = 576
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 100/206 (48%), Gaps = 42/206 (20%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ E + F ++G + V+++ +GFV+ EN ++ A+ LN
Sbjct: 132 VFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLN 191
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G++V++K + EAA +G N +++ NL D+
Sbjct: 192 GKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGAN-----LYIKNLDDSIGD 246
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQ 180
+++ELF P+GT+ C ++R+ GFV +PD ++ + E+NG MV KP+ V
Sbjct: 247 DKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLYVA 306
Query: 181 ISTSRVRQRPGVDEVVIGQKSVPVQA 206
++ + +R + +SVP+ A
Sbjct: 307 LAQRKEDRRARLQAQFSQIRSVPMPA 332
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C V K YGFV +N+E
Sbjct: 31 PSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEE 90
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
AI++LNG ++N+K + + ++ + K VFV NLS+ T ++ + F
Sbjct: 91 SALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAF 150
Query: 136 VPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
+GT+ ++R+ +GFV+ + + D + + LNG +VD K V
Sbjct: 151 SEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYV 202
Score = 39.7 bits (91), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 85 AIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
A+ LN N KP+++ S + P+ + +F+ NL + + F +G++
Sbjct: 8 ALDVLNFTPXNGKPIRV--MYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSI 65
Query: 142 VECDIV-------RNYGFVHIDSPDIN-KCIKELNGMMVDGK 175
+ C + + YGFV D+ + K I++LNGM+++ K
Sbjct: 66 LSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDK 107
>gi|91086169|ref|XP_970456.1| PREDICTED: similar to TIA-1 homolog [Tribolium castaneum]
gi|270010230|gb|EFA06678.1| hypothetical protein TcasGA2_TC009608 [Tribolium castaneum]
Length = 364
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++P S +L+ LF + G V C +++ Y FV N + TA+ +N +
Sbjct: 10 LYVGNLDPSVSEDLLCTLFSQIGPVKGCKIIREPGNDPYAFVEFTNHQSASTALAAMNKR 69
Query: 93 IVNEKPLKIEAATSRKG-PNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+ +K +K+ ATS P T+ +FVG+LS +RE F P+G + C IVR
Sbjct: 70 LFLDKEMKVNWATSPGNQPKQDTSNHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+ Y FV + + I+ +NG + + ++ ST +
Sbjct: 130 DPQTLKSKGYAFVSFVKKAEAENAIQAMNGQWLGSRSIRTNWSTRK 175
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 30/160 (18%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + IF+G+++P E +R F +G++ C +V K Y FV
Sbjct: 86 NQPKQDTSNHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 78 NDEEGRTAIKELNGQIVNEK------------PLKIEAATSR-KGP--------NTPTT- 115
E AI+ +NGQ + + P K E A R K P ++PT
Sbjct: 146 KKAEAENAIQAMNGQWLGSRSIRTNWSTRKPPPPKTEKAAQRAKQPTFDEVYNQSSPTNC 205
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI 155
V+ G + +++ F +G + + + ++ G+ I
Sbjct: 206 TVYCGGFTTGLTEDLMQKTFSQFGVIQDIRVFKDKGYAFI 245
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 20/166 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G V+ C V K YGFV +N+E
Sbjct: 115 PSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEE 174
Query: 81 EGRTAIKELNGQIVNEKP----LKIEAATSRKGPNTPT-TKVFVGNLSDNTRAPEVRELF 135
+ AIK LNG ++N+K L I + +P T V+V NLS+ ++++LF
Sbjct: 175 AAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDLKKLF 234
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVD 173
PYGT+ ++++ +GFV+ +PD ++ LNG ++
Sbjct: 235 GPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTIN 280
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 82/178 (46%), Gaps = 33/178 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ + E ++ LF YG + V+K+ +GFV+ +N + A++ LN
Sbjct: 216 VYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLN 275
Query: 91 GQIVN------------------EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G +N E KIE + +++ NL D+ +++
Sbjct: 276 GTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLK 335
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
+LF +GT+ C ++ + GFV +P + +K + E+NG ++ KP+ V ++
Sbjct: 336 DLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVAVA 393
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ S E ++ LF ++G + C V+ K GFV EE A+ E+N
Sbjct: 320 LYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMN 379
Query: 91 GQIVNEKPLKIEAATSRK 108
G+++ KPL + A ++
Sbjct: 380 GKLIGRKPLYVAVAQRKE 397
>gi|157114083|ref|XP_001657973.1| nucleolysin tia-1 [Aedes aegypti]
gi|108877443|gb|EAT41668.1| AAEL006710-PA [Aedes aegypti]
Length = 453
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ + +L+ LF + G V C +++ Y F+ N + +TA+ +N +
Sbjct: 10 LYVGNLDQSVTEDLLCALFGQMGAVKSCKIIREASSDPYAFIEYANHQSAQTALAAMNKR 69
Query: 93 IVNEKPLKIEAATS-RKGPNTPTTK---VFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+ +K +K+ ATS P T T++ +FVG+LS +RE F P+G + C IVR
Sbjct: 70 LFLKKEIKVNWATSPGNQPKTDTSQHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQ 199
+ Y FV + + I+ +NG + + ++ ST R+ P E + G
Sbjct: 130 DPQTLKSRGYAFVSFVKKAEAENAIQMMNGQWLGSRSIRTNWST---RKPPAPRENIKGI 186
Query: 200 KS 201
KS
Sbjct: 187 KS 188
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHME 77
N P + IF+G+++P E +R F +G++ C +V++ Y FV
Sbjct: 86 NQPKTDTSQHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSRGYAFVSFV 145
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP 110
E AI+ +NGQ + + ++ +T RK P
Sbjct: 146 KKAEAENAIQMMNGQWLGSRSIRTNWST-RKPP 177
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 89/181 (49%), Gaps = 21/181 (11%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P G IFI N++ G + + F +G ++ C V K Y
Sbjct: 84 RIMYSHRD-PSIRKSGMANIFIKNLDKGIDHKALHDTFSSFGNILSCKVATDASGQSKGY 142
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-----TKVFVGNLSDNT 126
GFV +++E + AI +LNG +VN+K + + ++ + VFV NL+++T
Sbjct: 143 GFVQFDSEEAAQNAIDKLNGMLVNDKQVYVGHFLRKQDRDGALYSIKFNNVFVKNLAEST 202
Query: 127 RAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMK 178
E++ +F +G + ++R+ +GFV+ +S D K ++ LNG +DG+
Sbjct: 203 TDEELKNIFAEHGAITSAVVMRDADGKSKCFGFVNFESADDAAKAVEALNGKKIDGEEWY 262
Query: 179 V 179
V
Sbjct: 263 V 263
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 91/184 (49%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N+ T+ E ++ +F ++G + V+++ +GFV+ E+ ++ A++ LN
Sbjct: 193 VFVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSKCFGFVNFESADDAAKAVEALN 252
Query: 91 GQIVNEKPLKIEAATSR-------KGPNTPTTK----------VFVGNLSDNTRAPEVRE 133
G+ ++ + + A + KG + K +++ NL D+ +++E
Sbjct: 253 GKKIDGEEWYVGKAQKKSERELELKGRFEQSMKETVDKFQGLNLYIKNLDDSINDEKLKE 312
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF +G + C ++R+ GFV +P + ++ + E+NG M+ KP+ V ++ +
Sbjct: 313 LFSDFGAITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMLISKPLYVALAQRK 372
Query: 186 VRQR 189
+R
Sbjct: 373 EERR 376
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++ + + +F + G+VV V ++ YG+V+ N ++ A+ L
Sbjct: 14 LYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 73
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N +N KP++I S + P+ + +F+ NL + + F +G ++ C +
Sbjct: 74 NFTPLNNKPIRI--MYSHRDPSIRKSGMANIFIKNLDKGIDHKALHDTFSSFGNILSCKV 131
Query: 147 V-------RNYGFVHIDSPDINK-CIKELNGMMVDGK 175
+ YGFV DS + + I +LNGM+V+ K
Sbjct: 132 ATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDK 168
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKE 88
++I N++ + E ++ LF +G + C V+++ GFV EE A+ E
Sbjct: 294 LNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVAFSTPEEASRALAE 353
Query: 89 LNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEV 131
+NG+++ KPL + A RK + + T AP V
Sbjct: 354 MNGKMLISKPLYV-ALAQRKEERRARLQAQFSQMRPVTMAPSV 395
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 23/194 (11%)
Query: 8 QLVKVSRYSNNQINI--SCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVEC 65
+L+ S + N I I S R+ P GT IFI N++ + + F +G ++ C
Sbjct: 87 ELLNFSVLNGNPIRIMFSHRD-PSIRKSGTANIFIKNLDKTIDNKALHDTFSAFGGILSC 145
Query: 66 DVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTP 113
V K YGFV E +E TAI+++NG ++N+K P + G +
Sbjct: 146 KVAVDGSGQSKGYGFVQFEQEESALTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGGVSK 205
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIK 165
V+V NL +NT +++ +F YGT+ ++R+ +GFV+ + PD K ++
Sbjct: 206 FNNVYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAVE 265
Query: 166 ELNGMMVDGKPMKV 179
LNG D K V
Sbjct: 266 ALNGKKRDEKEWYV 279
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ T+ + ++ +F YG + V+++ +GFV+ E+ + A++ LN
Sbjct: 209 VYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAVEALN 268
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ +EK K E + +++ NL D ++RE
Sbjct: 269 GKKRDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDEKLRE 328
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF YGT+ C ++R+ GFV SP + + + E+NG MV KP+ V ++ +
Sbjct: 329 LFADYGTITSCKVMRDPQGQSRGSGFVAFSSPEEATRAVTEMNGKMVGSKPLYVALAQRK 388
Query: 186 VRQR 189
+R
Sbjct: 389 EERR 392
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 76/157 (48%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G++ P S + LF + G+VV V ++ Y +V+ + ++ A++ L
Sbjct: 30 LYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRALELL 89
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++N P++I S + P+ + T +F+ NL + + F +G ++ C +
Sbjct: 90 NFSVLNGNPIRI--MFSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSAFGGILSCKV 147
Query: 147 V-------RNYGFVHIDSPDIN-KCIKELNGMMVDGK 175
+ YGFV + + I+++NGM+++ K
Sbjct: 148 AVDGSGQSKGYGFVQFEQEESALTAIEKVNGMLLNDK 184
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCI 164
+T ++VG+L N ++ ELF G VV + R+ Y +V+ +S D + +
Sbjct: 27 STSLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRAL 86
Query: 165 KELNGMMVDGKPMKVQIS 182
+ LN +++G P+++ S
Sbjct: 87 ELLNFSVLNGNPIRIMFS 104
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ G S E +R LFE YGK+ + K+ +GFV+ E+ E A++ELN
Sbjct: 233 VYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELN 292
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ +N + L + EAA K +FV NL D+ + ++ E
Sbjct: 293 DKDINGQKLYVGRAQKKRERIEELKRQYEAARLEKLSKYQGVNLFVKNLDDSIDSVKLEE 352
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K I E+N M GKP+ V ++ +
Sbjct: 353 EFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQRK 412
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R +++ + + + +Q
Sbjct: 413 DVRRSQLEQQIQARNQMRMQ 432
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N++P + + F +GK++ C V K +
Sbjct: 121 CRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNSKCF 180
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E + AI+ +NG ++N++ + + S+K + T V+V N+
Sbjct: 181 GFVHYETAEAAKAAIENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDL 240
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKP 176
E+R+LF PYG + + ++ +GFV+ +S + K ++ELN ++G+
Sbjct: 241 GFSEEEMRKLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQK 300
Query: 177 MKV 179
+ V
Sbjct: 301 LYV 303
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G +NP + L+ +F G+V V ++ Y +V+ E+G AI+EL
Sbjct: 52 LYVGELNPSVNEALLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIEEL 111
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N +++ +P +I S++ P+ +F+ NL + + F +G ++ C +
Sbjct: 112 NYSLIDGRPCRI--MWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGKILSCKV 169
Query: 147 VRN-------YGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
+ +GFVH ++ + K I+ +NGM+++ + + V S+ + +E+
Sbjct: 170 ATDEQGNSKCFGFVHYETAEAAKAAIENVNGMLLNDREVYVGKHVSKKDRESKFEEM 226
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 102 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV 153
+AA S + P+T + ++VG L+ + + E+F P G V + R+ Y +V
Sbjct: 38 DAADSSQLPDT-SASLYVGELNPSVNEALLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYV 96
Query: 154 HIDS-PDINKCIKELNGMMVDGKPMKVQIS 182
+ D K I+ELN ++DG+P ++ S
Sbjct: 97 NFHKLEDGEKAIEELNYSLIDGRPCRIMWS 126
>gi|397517065|ref|XP_003828740.1| PREDICTED: RNA-binding protein 14 isoform 6 [Pan paniscus]
gi|426369337|ref|XP_004051649.1| PREDICTED: RNA-binding protein 14 isoform 5 [Gorilla gorilla
gorilla]
Length = 140
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 7/121 (5%)
Query: 36 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QI 93
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60
Query: 94 VNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFV 153
+ L +E SR P T K+FVGN+S + E+R LF G V+ECD+V+ G V
Sbjct: 61 RPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--GTV 115
Query: 154 H 154
H
Sbjct: 116 H 116
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 31/41 (75%), Gaps = 2/41 (4%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVH 75
T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK G VH
Sbjct: 78 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--GTVH 116
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 116 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGM-MV 172
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 173 DGKPMKVQISTSR 185
G+ + V++S R
Sbjct: 62 PGRALVVEMSRPR 74
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 94/192 (48%), Gaps = 32/192 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
++ NV+ + E LF KYGK+ C + K +GFV+ EN +E +TA+ EL+
Sbjct: 228 VYCKNVDADVTDEEFEKLFTKYGKITSCVLQRDEDGKSKGFGFVNFENHDEAQTAVDELH 287
Query: 91 -----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E+ L+ EAA + K +++ N+ ++ +R+
Sbjct: 288 DSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLRD 347
Query: 134 LFVPYGTVVECDIVR-------NYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F P+G + C I+R +GFV +P+ NK + E+NG M+D +P+ V ++ +
Sbjct: 348 EFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRK 407
Query: 186 VRQRPGVDEVVI 197
+R ++ ++
Sbjct: 408 DVRRQQLEAQIM 419
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 78/185 (42%), Gaps = 26/185 (14%)
Query: 21 NISCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN----- 70
N CR M P G IFI N++ G + + F +G ++ C V +
Sbjct: 114 NRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATSESGSL 173
Query: 71 -YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNL 122
YGFVH E E AIK +NG ++N+K + + RK T V+ N+
Sbjct: 174 GYGFVHYETAEAADAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRARFTNVYCKNV 233
Query: 123 SDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDG 174
+ E +LF YG + C + R+ +GFV+ ++ D + EL+ G
Sbjct: 234 DADVTDEEFEKLFTKYGKITSCVLQRDEDGKSKGFGFVNFENHDEAQTAVDELHDSDFKG 293
Query: 175 KPMKV 179
+ + V
Sbjct: 294 QKLFV 298
>gi|125775095|ref|XP_001358799.1| GA18869 [Drosophila pseudoobscura pseudoobscura]
gi|195144954|ref|XP_002013461.1| GL24152 [Drosophila persimilis]
gi|54638540|gb|EAL27942.1| GA18869 [Drosophila pseudoobscura pseudoobscura]
gi|194102404|gb|EDW24447.1| GL24152 [Drosophila persimilis]
Length = 464
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 22/169 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S EL+ LF G V C +++ Y F+ N + TA+ +N +
Sbjct: 9 LYVGNLDSSVSEELLIALFGTMGAVKNCKIIREPGNDPYAFIEYSNYQAASTALTAMNKR 68
Query: 93 IVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ EK +K+ ATS N P T +FVG+LS +RE F P+G + C I
Sbjct: 69 LFLEKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRI 126
Query: 147 VRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
VR+ Y FV + + I+ +NG + + ++ ST ++
Sbjct: 127 VRDPQTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKL 175
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G+++P E +R F +G++ C +V K Y FV E AI+ +
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKAEAENAIQAM 156
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTTK 116
NGQ + + ++ +T + P ++K
Sbjct: 157 NGQWIGSRSIRTNWSTRKLPPPRESSK 183
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 29/192 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------Y 71
CR M P G IFI N++ + + F +G ++ C V ++ Y
Sbjct: 124 CRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDESGGSRGY 183
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + + +K + T ++V N+
Sbjct: 184 GFVHYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDT 243
Query: 125 NTRAPEVRELFVPYGTVVECDI-------VRNYGFV-HIDSPDINKCIKELNGMMVDGKP 176
T E RELF YG + + VR +GFV +I D NK + ELN +D K
Sbjct: 244 ETTDDEFRELFEKYGEITSASLARDQEGKVRGFGFVNYIRHEDANKAVDELND--IDFKS 301
Query: 177 MKVQISTSRVRQ 188
K+ + ++ +
Sbjct: 302 QKLYVGRAQKKH 313
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEND 79
P ++ + +++G ++P + ++ LF G+V V ++ Y +V+ +
Sbjct: 45 PANANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 104
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFV 136
+G A++ELN ++ KP +I S++ P T +F+ NL + + F
Sbjct: 105 NDGERALEELNYTLIKGKPCRI--MWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFA 162
Query: 137 PYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
+G ++ C + R YGFVH ++ + N IK +NGM+++ K
Sbjct: 163 AFGNILSCKVAQDESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEK 209
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
I++ N++ T+ + R LFEKYG++ + V+ +GFV+ E+ A+ ELN
Sbjct: 236 IYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRGFGFVNYIRHEDANKAVDELN 295
Query: 91 -------------GQIVNEKPLKI----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
Q +E+ ++ EA K ++V NL+D+ E+R+
Sbjct: 296 DIDFKSQKLYVGRAQKKHEREEELRRQYEAQRQEKSAKYMGVNLYVKNLADDIDDEELRK 355
Query: 134 LFVPYGTVVECDIVRN 149
+F YG++ ++R+
Sbjct: 356 VFEAYGSITSAKVMRD 371
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 30/167 (17%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAI 86
G +FI N++ + + F +G V+ C V K YGF+ EN+E+ ++AI
Sbjct: 119 GHANVFIKNLDTKIDNKALYETFASFGPVLSCKVAVDNNGQSKGYGFIQFENEEDAQSAI 178
Query: 87 KELNGQIVNEKPL----------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFV 136
LNG +VN++ + +IEA S K T V+V NLS+ T +++++F
Sbjct: 179 NRLNGMLVNDREVYVGPFVRRLERIEANGSPK-----FTNVYVKNLSETTSDEDLKKIFS 233
Query: 137 PYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
YG + ++ R +GFV+ SPD +++LNGM K
Sbjct: 234 SYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAAVEKLNGMTFSDK 280
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 90/197 (45%), Gaps = 39/197 (19%)
Query: 22 ISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFV 74
I P F++V ++ N++ TS E ++ +F YG + V+K+ +GFV
Sbjct: 203 IEANGSPKFTNV-----YVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFV 257
Query: 75 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK------------------ 116
+ ++ + A+++LNG ++K + A RKG K
Sbjct: 258 NFQSPDSAAAAVEKLNGMTFSDKVWYVGRA-QRKGEREAELKAKFEQERNSRYEKMKAAN 316
Query: 117 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELN 168
+++ NL D ++ELF +G++ C ++ + GFV +P + ++ + E+N
Sbjct: 317 LYLKNLGDTIDEERLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALSEMN 376
Query: 169 GMMVDGKPMKVQISTSR 185
G M+ KP+ V I+ R
Sbjct: 377 GKMIGKKPLYVAIAQRR 393
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N+ E ++ LF ++G + C V+ K GFV EE A+ E+N
Sbjct: 317 LYLKNLGDTIDEERLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALSEMN 376
Query: 91 GQIVNEKPLKIEAATSRK 108
G+++ +KPL + A R+
Sbjct: 377 GKMIGKKPLYVAIAQRRE 394
Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 163
P ++VG+L N + ++ +LF VV + R+ Y +V+ +P D K
Sbjct: 31 PNRSLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKA 90
Query: 164 IKELNGMMVDGKPMKVQIS 182
++ LN ++GKP+++ S
Sbjct: 91 MEVLNFTPLNGKPIRIMFS 109
>gi|325303454|tpg|DAA34558.1| TPA_exp: RNA-binding protein LARK [Amblyomma variegatum]
Length = 217
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGM 170
+P TK+FVG+L D R E++ELF YGTV ECD++ YGFVH+ + + + +K LN
Sbjct: 2 SPRTKLFVGHLPDGLRTEELQELFAKYGTVTECDVINKYGFVHMATEEQAEEALKNLNNY 61
Query: 171 MVDGKPMKVQISTSRVRQRPGVDEVVIGQKSVPV 204
G + V+ STS+ Q PG G P
Sbjct: 62 NFMGSTLSVERSTSKFHQEPGAPGRAKGGPRPPY 95
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+G++ G E ++ LF KYG V ECDV+ YGFVHM +E+ A+K LN
Sbjct: 6 KLFVGHLPDGLRTEELQELFAKYGTVTECDVINKYGFVHMATEEQAEEALKNLNNYNFMG 65
Query: 97 KPLKIEAATSR 107
L +E +TS+
Sbjct: 66 STLSVERSTSK 76
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +F+ N+ P + + +F +G ++ C V K YGFV E +E
Sbjct: 117 PSLRKSGRANLFVKNLEPSIDSKNLYEMFSSFGTILSCKVATDSAGQSKGYGFVQYETEE 176
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
+ AI LNG + N++ + + R+ T V++ NL ++R+ F P+G
Sbjct: 177 SAQDAINRLNGMLANDREMFVGLHMRRRNREVKFTNVYIKNLPTEFSDDDLRQEFAPFGE 236
Query: 141 VVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKPMKV 179
+ ++R+ +GFV+ + P+ + +K+ NG +++ K + V
Sbjct: 237 ITSAVVMRDVNGVSKCFGFVNFEKPEFALEAVKKANGKVINDKTLYV 283
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 83/185 (44%), Gaps = 33/185 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N+ S + +R F +G++ V+++ +GFV+ E E A+K+ N
Sbjct: 213 VYIKNLPTEFSDDDLRQEFAPFGEITSAVVMRDVNGVSKCFGFVNFEKPEFALEAVKKAN 272
Query: 91 GQIVNEKPLKIEAATSR-----------------KGPNTPT-TKVFVGNLSDNTRAPEVR 132
G+++N+K L + A + K + P +++ N+ D+ ++
Sbjct: 273 GKVINDKTLYVGRAQKKAERQAELKTKFKQEDRDKKVDKPNGINLYLKNIDDSINDEGLK 332
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTS 184
LF +G V C ++ + GFV + + + I +NG +V KP+ V ++
Sbjct: 333 ILFEEFGQVTSCKVMVDAQGRSKGSGFVLFATAEAGHSAINGMNGRIVGKKPLYVGLAQP 392
Query: 185 RVRQR 189
+ +R
Sbjct: 393 KEERR 397
>gi|326926670|ref|XP_003209521.1| PREDICTED: hypothetical protein LOC100540496 [Meleagris gallopavo]
Length = 304
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Query: 36 FKIFIGNVNPGTSVELIRPLFE-KYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
K+F+GNV + E + LF G V+ ++K + FVH+ ++ AI +LNG +
Sbjct: 65 IKLFVGNVPEEATAEELSELFSGAAGPVLGIALMKQFAFVHLRDEAAAARAITQLNGHQL 124
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+ + + +E + R T T K+FVGN+S + E+R LF YGTVVECD+V+
Sbjct: 125 HGRRIVVEPSRPRP---TNTCKIFVGNVSAACTSGELRSLFQQYGTVVECDVVK 175
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 69
T KIF+GNV+ + +R LF++YG VVECDVVK
Sbjct: 141 TCKIFVGNVSAACTSGELRSLFQQYGTVVECDVVK 175
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFV-PYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGM 170
P K+FVGN+ + A E+ ELF G V+ +++ + FVH+ D + I +LNG
Sbjct: 63 PGIKLFVGNVPEEATAEELSELFSGAAGPVLGIALMKQFAFVHLRDEAAAARAITQLNGH 122
Query: 171 MVDGKPMKVQISTSR 185
+ G+ + V+ S R
Sbjct: 123 QLHGRRIVVEPSRPR 137
>gi|397517063|ref|XP_003828739.1| PREDICTED: RNA-binding protein 14 isoform 5 [Pan paniscus]
Length = 139
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 66/114 (57%), Gaps = 5/114 (4%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 96 E-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+ L +E SR P T K+FVGN+S + E+R LF G V+ECD+V+
Sbjct: 62 PGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 116 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGM-MV 172
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 173 DGKPMKVQISTSR 185
G+ + V++S R
Sbjct: 62 PGRALVVEMSRPR 74
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 29/37 (78%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 69
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 20/168 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C V K YGFV ++DE
Sbjct: 107 PTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSDE 166
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPN-----TPTTKVFVGNLSDNTRAPEVRELF 135
+ AI++LNG ++N+K + + ++ + T T VFV NLS++T E+R++F
Sbjct: 167 AAQKAIEKLNGMLLNDKQVYVGPFVRKQERDMAVDKTRFTNVFVKNLSESTLEEELRKIF 226
Query: 136 VPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 175
+GT+ ++++ +GFV+ + + D + ++ LNG +D K
Sbjct: 227 GEFGTITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKLDNK 274
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 89/184 (48%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N++ T E +R +F ++G + V+K+ +GFV+ EN E+ A++ LN
Sbjct: 208 VFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALN 267
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G ++ K + E + + +++ NL D+ +++E
Sbjct: 268 GYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNLYLKNLDDSISDDKLKE 327
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF PYGT+ C ++R+ GFV +P + ++ + E+NG MV KP+ V ++ +
Sbjct: 328 LFSPYGTITSCKVMRDPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRK 387
Query: 186 VRQR 189
+R
Sbjct: 388 EERR 391
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 80/162 (49%), Gaps = 23/162 (14%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++ + + LF + G+VV V ++ YG+V+ N ++ A++ L
Sbjct: 29 LYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEVL 88
Query: 90 NGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
N ++ KP++I + T R+ N +F+ NL + + F +G ++ C
Sbjct: 89 NFTPLHGKPIRIMYSNRDPTIRRSGN---GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 145
Query: 146 IV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
+ + YGFV DS + K I++LNGM+++ K + V
Sbjct: 146 VAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYV 187
>gi|195331490|ref|XP_002032434.1| GM23518 [Drosophila sechellia]
gi|194121377|gb|EDW43420.1| GM23518 [Drosophila sechellia]
Length = 464
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 22/169 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S +L+ LF G V C +++ Y F+ N + TA+ +N +
Sbjct: 9 LYVGNLDTSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAASTALTAMNKR 68
Query: 93 IVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ EK +K+ ATS N P T +FVG+LS +RE F P+G + C I
Sbjct: 69 LFLEKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRI 126
Query: 147 VRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
VR+ Y FV + + I+ +NG + + ++ ST ++
Sbjct: 127 VRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKL 175
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G+++P E +R F +G++ C +V K Y FV E AI+ +
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAM 156
Query: 90 NGQIVNEKPLKIEAATSRKGP 110
NGQ + + ++ +T + P
Sbjct: 157 NGQWIGSRSIRTNWSTRKLPP 177
>gi|24649519|ref|NP_732945.1| Rox8, isoform D [Drosophila melanogaster]
gi|442620772|ref|NP_732944.2| Rox8, isoform E [Drosophila melanogaster]
gi|442620774|ref|NP_001262897.1| Rox8, isoform G [Drosophila melanogaster]
gi|442620776|ref|NP_001262898.1| Rox8, isoform H [Drosophila melanogaster]
gi|23172126|gb|AAN13978.1| Rox8, isoform D [Drosophila melanogaster]
gi|211938549|gb|ACJ13171.1| FI04408p [Drosophila melanogaster]
gi|440217818|gb|AAN13977.2| Rox8, isoform E [Drosophila melanogaster]
gi|440217819|gb|AGB96277.1| Rox8, isoform G [Drosophila melanogaster]
gi|440217820|gb|AGB96278.1| Rox8, isoform H [Drosophila melanogaster]
Length = 470
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 22/169 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S +L+ LF G V C +++ Y F+ N + TA+ +N +
Sbjct: 9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKR 68
Query: 93 IVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ EK +K+ ATS N P T +FVG+LS +RE F P+G + C I
Sbjct: 69 LFLEKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRI 126
Query: 147 VRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
VR+ Y FV + + I+ +NG + + ++ ST ++
Sbjct: 127 VRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKL 175
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G+++P E +R F +G++ C +V K Y FV E AI+ +
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAM 156
Query: 90 NGQIVNEKPLKIEAATSRKGP 110
NGQ + + ++ +T + P
Sbjct: 157 NGQWIGSRSIRTNWSTRKLPP 177
>gi|241856245|ref|XP_002416055.1| RNA binding motif-containing protein, putative [Ixodes scapularis]
gi|215510269|gb|EEC19722.1| RNA binding motif-containing protein, putative [Ixodes scapularis]
Length = 195
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMM 171
P TK+FVG+L D R E++ELF YGTV ECD++ YGFVH+ + + + +K LN
Sbjct: 3 PRTKLFVGHLPDGLRTEELQELFAKYGTVTECDVINKYGFVHMSTEEECEEALKNLNNYN 62
Query: 172 VDGKPMKVQISTSRVRQRPGV 192
G + V+ STS+ Q PG
Sbjct: 63 FMGSTLSVERSTSKFHQEPGA 83
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+G++ G E ++ LF KYG V ECDV+ YGFVHM +EE A+K LN
Sbjct: 6 KLFVGHLPDGLRTEELQELFAKYGTVTECDVINKYGFVHMSTEEECEEALKNLNNYNFMG 65
Query: 97 KPLKIEAATSR 107
L +E +TS+
Sbjct: 66 STLSVERSTSK 76
>gi|17944383|gb|AAL48083.1| RE71384p [Drosophila melanogaster]
Length = 470
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 22/169 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S +L+ LF G V C +++ Y F+ N + TA+ +N +
Sbjct: 9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKR 68
Query: 93 IVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ EK +K+ ATS N P T +FVG+LS +RE F P+G + C I
Sbjct: 69 LFLEKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRI 126
Query: 147 VRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
VR+ Y FV + + I+ +NG + + ++ ST ++
Sbjct: 127 VRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKL 175
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G+++P E +R F +G++ C +V K Y FV E AI+ +
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAM 156
Query: 90 NGQIVNEKPLKIEAATSRKGP 110
NGQ + + ++ +T + P
Sbjct: 157 NGQWIGSRSIRTNWSTRKLPP 177
>gi|426369335|ref|XP_004051648.1| PREDICTED: RNA-binding protein 14 isoform 4 [Gorilla gorilla
gorilla]
Length = 158
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 66/114 (57%), Gaps = 5/114 (4%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 96 E-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+ L +E SR P T K+FVGN+S + E+R LF G V+ECD+V+
Sbjct: 62 PGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 116 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGM-MV 172
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 173 DGKPMKVQISTSR 185
G+ + V++S R
Sbjct: 62 PGRALVVEMSRPR 74
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 29/37 (78%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 69
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112
>gi|397517061|ref|XP_003828738.1| PREDICTED: RNA-binding protein 14 isoform 4 [Pan paniscus]
Length = 159
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 66/114 (57%), Gaps = 5/114 (4%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 96 E-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+ L +E SR P T K+FVGN+S + E+R LF G V+ECD+V+
Sbjct: 62 PGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 116 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGM-MV 172
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 173 DGKPMKVQISTSR 185
G+ + V++S R
Sbjct: 62 PGRALVVEMSRPR 74
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 29/37 (78%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 69
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112
>gi|24649513|ref|NP_732942.1| Rox8, isoform B [Drosophila melanogaster]
gi|24649515|ref|NP_732943.1| Rox8, isoform C [Drosophila melanogaster]
gi|7301090|gb|AAF56224.1| Rox8, isoform C [Drosophila melanogaster]
gi|7301091|gb|AAF56225.1| Rox8, isoform B [Drosophila melanogaster]
Length = 464
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 22/169 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S +L+ LF G V C +++ Y F+ N + TA+ +N +
Sbjct: 9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKR 68
Query: 93 IVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ EK +K+ ATS N P T +FVG+LS +RE F P+G + C I
Sbjct: 69 LFLEKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRI 126
Query: 147 VRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
VR+ Y FV + + I+ +NG + + ++ ST ++
Sbjct: 127 VRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKL 175
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G+++P E +R F +G++ C +V K Y FV E AI+ +
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAM 156
Query: 90 NGQIVNEKPLKIEAATSRKGP 110
NGQ + + ++ +T + P
Sbjct: 157 NGQWIGSRSIRTNWSTRKLPP 177
>gi|363746191|ref|XP_003643562.1| PREDICTED: RNA-binding protein 14-like, partial [Gallus gallus]
Length = 144
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEK-YGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
K+F+GNV + E + LF G V+ ++K + FVH+ ++ AI +LNG ++
Sbjct: 35 KLFVGNVPEEATAEELSELFSGVAGPVLGIALMKQFAFVHLRDEAAAARAITQLNGHQLH 94
Query: 96 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+ + +E + R T T K+FVGN+S + E+R LF YGTVVECD+V+
Sbjct: 95 GRRIVVEPSRPRP---TNTCKIFVGNVSAACTSGELRSLFQQYGTVVECDVVK 144
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 69
T KIF+GNV+ + +R LF++YG VVECDVVK
Sbjct: 110 TCKIFVGNVSAACTSGELRSLFQQYGTVVECDVVK 144
Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVP-YGTVVECDIVRNYGFVHI-DSPDINKCIKELNGM 170
P K+FVGN+ + A E+ ELF G V+ +++ + FVH+ D + I +LNG
Sbjct: 32 PGIKLFVGNVPEEATAEELSELFSGVAGPVLGIALMKQFAFVHLRDEAAAARAITQLNGH 91
Query: 171 MVDGKPMKVQISTSR 185
+ G+ + V+ S R
Sbjct: 92 QLHGRRIVVEPSRPR 106
>gi|405974565|gb|EKC39200.1| RNA-binding protein 4 [Crassostrea gigas]
Length = 226
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKE-LN 168
P + +TK+++GNL + R +++++F YG V+ECDIVRNY F+H ++P+ K + L+
Sbjct: 2 PPSISTKLYIGNLPETCRKADLQKMFEAYGKVIECDIVRNYCFIHFENPNEAKMAQANLD 61
Query: 169 GMMVDGKPMKVQISTSRVRQRPGV 192
G+ +G +KV++S S+VRQ+PG+
Sbjct: 62 GVDFEGVKLKVEMSHSKVRQKPGM 85
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K++IGN+ ++ +FE YGKV+ECD+V+NY F+H EN E + A L+G
Sbjct: 8 KLYIGNLPETCRKADLQKMFEAYGKVIECDIVRNYCFIHFENPNEAKMAQANLDGVDFEG 67
Query: 97 KPLKIEAATSR 107
LK+E + S+
Sbjct: 68 VKLKVEMSHSK 78
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 21/181 (11%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P GT IFI N++ + + F +G ++ C V K Y
Sbjct: 96 RIMFSHRD-PSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGTILSCKVATDPSGQSKGY 154
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNT 126
GFV E +E +TAI+++NG ++N+K P + G + V+V NL+D+T
Sbjct: 155 GFVQFEQEESAQTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGVVSKFNNVYVKNLADST 214
Query: 127 RAPEVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMK 178
E++++F YG + ++R+ +GFV+ + + D K ++ LNG D K
Sbjct: 215 TDDELKKVFEAYGPISSAVVMRDNEGKSKCFGFVNFEHADDAAKAVEALNGKKFDEKEWY 274
Query: 179 V 179
V
Sbjct: 275 V 275
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ T+ + ++ +FE YG + V+++ +GFV+ E+ ++ A++ LN
Sbjct: 205 VYVKNLADSTTDDELKKVFEAYGPISSAVVMRDNEGKSKCFGFVNFEHADDAAKAVEALN 264
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ +EK K E + +++ NL D ++RE
Sbjct: 265 GKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTIDDEKLRE 324
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
+F YGT+V C ++R+ GFV SPD + + E+NG MV KP+ V ++ +
Sbjct: 325 IFSEYGTIVSCKVMRDPQGQSRGSGFVAFSSPDEATRAVTEMNGKMVGSKPLYVALAQRK 384
Query: 186 VRQR 189
+R
Sbjct: 385 EERR 388
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 21/171 (12%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P G +FI N++P + + F +G V+ C + K Y
Sbjct: 85 RIMFSHRD-PSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGY 143
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKP----LKIEAATSRKGPNTPT-TKVFVGNLSDNT 126
GFV E +E + AIK LNG ++N+K L + +G +P T V+V NLS+ T
Sbjct: 144 GFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSETT 203
Query: 127 RAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNG 169
+++ +F YG++ ++R+ +GFV+ S D ++ LNG
Sbjct: 204 TDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNG 254
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 83/181 (45%), Gaps = 33/181 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ + ++ +F KYG + V+++ +GFV+ ++ + A++ LN
Sbjct: 194 VYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLN 253
Query: 91 GQIVNEKPL------------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G N+ + K E K T +++ NL D+ +++
Sbjct: 254 GATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKLK 313
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTS 184
ELF +GT+ C ++ + GFV +P + + + +NG M+ KP+ V ++
Sbjct: 314 ELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQR 373
Query: 185 R 185
+
Sbjct: 374 K 374
>gi|311771547|ref|NP_001185775.1| RBM14-RBM4 protein isoform 2 [Homo sapiens]
gi|410222938|gb|JAA08688.1| RBM14-RBM4 readthrough [Pan troglodytes]
Length = 118
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 36 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G +
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60
Query: 95 NE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN 149
+ L +E SR P T K+FVGN+S + E+R LF G V+ECD+V+
Sbjct: 61 RPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKG 113
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 116 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGM-MV 172
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 173 DGKPMKVQISTSR 185
G+ + V++S R
Sbjct: 62 PGRALVVEMSRPR 74
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 70
T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK
Sbjct: 78 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKG 113
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 89/184 (48%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N++ T E +R +F ++G + V+K+ +GFV+ EN E+ A++ LN
Sbjct: 208 VFVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALN 267
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G ++ K + E + + +++ NL D+ +++E
Sbjct: 268 GYKLDNKDWFVGRAQKKSEREMELKHRFEQSAKEAVDKSQGLNLYIKNLDDSISDEKLKE 327
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF PYGT+ C ++R+ GFV +P + ++ + E+NG MV KP+ V ++ +
Sbjct: 328 LFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLYVALAQRK 387
Query: 186 VRQR 189
+R
Sbjct: 388 EERR 391
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 20/168 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C V K YGFV +++E
Sbjct: 107 PTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSEE 166
Query: 81 EGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
+ AI++LNG ++N+K P + T T VFV NLS++T E+R++F
Sbjct: 167 AAQKAIEKLNGMLLNDKQVYVGPFVRKHERDMAVDKTRFTNVFVKNLSESTLEEELRKIF 226
Query: 136 VPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 175
+G + ++++ +GFV+ + + D + ++ LNG +D K
Sbjct: 227 GEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKLDNK 274
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 80/162 (49%), Gaps = 23/162 (14%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++ + + LF + G+VV V ++ YG+V+ N ++ A++ L
Sbjct: 29 LYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEVL 88
Query: 90 NGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
N ++ KP++I + T R+ N +F+ NL + + F +G ++ C
Sbjct: 89 NFTPLHGKPIRIMYSNRDPTIRRSGN---GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 145
Query: 146 IV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
+ + YGFV DS + K I++LNGM+++ K + V
Sbjct: 146 VAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYV 187
>gi|311771527|ref|NP_001185766.1| RNA-binding protein 14 isoform 3 [Homo sapiens]
gi|345783059|ref|XP_003432363.1| PREDICTED: RNA-binding protein 14 [Canis lupus familiaris]
gi|397517059|ref|XP_003828737.1| PREDICTED: RNA-binding protein 14 isoform 3 [Pan paniscus]
gi|426369333|ref|XP_004051647.1| PREDICTED: RNA-binding protein 14 isoform 3 [Gorilla gorilla
gorilla]
gi|83267695|gb|ABB99396.1| coactivator regulator [Homo sapiens]
Length = 119
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 36 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G +
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60
Query: 95 NE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN 149
+ L +E SR P T K+FVGN+S + E+R LF G V+ECD+V+
Sbjct: 61 RPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKG 113
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 116 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGM-MV 172
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 173 DGKPMKVQISTSR 185
G+ + V++S R
Sbjct: 62 PGRALVVEMSRPR 74
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 70
T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK
Sbjct: 78 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKG 113
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G+ IFI N++ + + F +G ++ C V K +GFV + E
Sbjct: 118 PSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGE 177
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
++AIK LNG ++N+KP+ + ++ K VFV NLS++T ++ ++F
Sbjct: 178 AAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIF 237
Query: 136 VPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
YG + I+ R +GF++ SP D + ++ELNG ++ K V
Sbjct: 238 GAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYV 289
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 87/185 (47%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ E + +F YG + ++ + +GF++ ++ ++ A++ELN
Sbjct: 219 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 278
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ +N+K + +AA +G N +++ NL D+
Sbjct: 279 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLN-----LYMKNLDDSIGD 333
Query: 129 PEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180
++ ELF YG + C I+R+ GFV + + ++ + E+NG M+ GKP+ V
Sbjct: 334 DQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVA 393
Query: 181 ISTSR 185
+ +
Sbjct: 394 FAQRK 398
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 73 FVHMENDEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTR 127
+V+ N + A++ LN +N KP+++ + ++ R G + +F+ NL
Sbjct: 83 YVNFNNPVDAARALELLNFAPLNGKPIRVMYSNRDPSSRRSG----SANIFIKNLDKAID 138
Query: 128 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 179
+ + F +G ++ C + + +GFV D + + IK LNGM+++ KP+ V
Sbjct: 139 HKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV 198
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKE 88
+++ N++ + + LF YGK+ C ++ K GFV EE A+ E
Sbjct: 320 LNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTE 379
Query: 89 LNGQIVNEKPLKIEAATSRK 108
+NG++++ KPL + A ++
Sbjct: 380 MNGKMISGKPLYVAFAQRKE 399
>gi|193648018|ref|XP_001950341.1| PREDICTED: nucleolysin TIAR-like [Acyrthosiphon pisum]
Length = 388
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++P + EL+ LF G V C V++ Y F+ + TA+ +NG+
Sbjct: 10 LYVGNLDPSVTEELLCALFTNIGPVNACKVIREPGSDPYAFLEFDTHSGAATALAAMNGR 69
Query: 93 IVNEKPLKIEAATSRKG-PNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+ +K +K+ AT+ P T+ +FVG+LS ++E F P+G + C IVR
Sbjct: 70 LFLDKEMKVNWATTPGNQPKLDTSNHYHIFVGDLSPEIETHTLKEAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+ Y FV + D I +NG + + ++ ST +
Sbjct: 130 DPQTLKSKGYAFVSFVKKSDAENAINSMNGQWLGSRSIRTNWSTRK 175
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 78/186 (41%), Gaps = 33/186 (17%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + + IF+G+++P ++ F +G++ C +V K Y FV
Sbjct: 86 NQPKLDTSNHYHIFVGDLSPEIETHTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAATSR----KGPN-----------------TPTT- 115
+ AI +NGQ + + ++ +T + + PN +PT
Sbjct: 146 KKSDAENAINSMNGQWLGSRSIRTNWSTRKPPPPRAPNKYSGYRAVTFDDVYNQSSPTNC 205
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--YGFVHIDSPD-INKCIKELNGMMV 172
V+ G + + V ++F +GT+VE R+ Y F+ + + I+ ++ +
Sbjct: 206 TVYCGGIVEGLTEELVEQVFSRFGTIVEIRAFRDKGYAFIKFSTKEAATTAIEAVHNTEI 265
Query: 173 DGKPMK 178
+G P+K
Sbjct: 266 NGHPVK 271
Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVN 95
++ G + G + EL+ +F ++G +VE K Y F+ E TAI+ ++ +N
Sbjct: 207 VYCGGIVEGLTEELVEQVFSRFGTIVEIRAFRDKGYAFIKFSTKEAATTAIEAVHNTEIN 266
Query: 96 EKPLKIEAATSRKGPNT 112
P+K PN+
Sbjct: 267 GHPVKCFWGKESGDPNS 283
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 20/165 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P GT IFI N++ + + F +G ++ C + + YGFV E DE
Sbjct: 115 PSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDE 174
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVRELF 135
++AI +LNG ++N+K + + ++ N + V+V NLSD E++E+F
Sbjct: 175 SAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMF 234
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMV 172
YGT+ ++R+ +GFV+ ++ D + ++ELN +V
Sbjct: 235 GKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNDGVV 279
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 96/192 (50%), Gaps = 22/192 (11%)
Query: 9 LVKVSRYSNNQINI--SCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECD 66
++ + ++N I I S R+ P GT IFI N++ + + F +G ++ C
Sbjct: 97 ILNFTPFNNKPIRIMYSHRD-PSIRKSGTGNIFIKNLDKTIDHKALHDTFSSFGNILSCK 155
Query: 67 VV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK--- 116
V + YGFV +N+E + AI +LNG ++N+K + + + ++ + K
Sbjct: 156 VATDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDSASNKKFN 215
Query: 117 -VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKEL 167
V+V NLS++T +++ +F YG + I+R+ +GFV+ ++ D K ++ L
Sbjct: 216 NVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESL 275
Query: 168 NGMMVDGKPMKV 179
NG +D K V
Sbjct: 276 NGKKIDDKEWYV 287
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 91/189 (48%), Gaps = 42/189 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ E ++ +F +YG++ ++++ +GFV+ EN + A++ LN
Sbjct: 217 VYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESLN 276
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ +++K + EA +G N +++ NL D+
Sbjct: 277 GKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVN-----LYIKNLDDSISD 331
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
++ELF +G + C ++R+ GFV +P + ++ + E+NG MV KP+ V
Sbjct: 332 ENLKELFSDFGMITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVA 391
Query: 181 ISTSRVRQR 189
++ + +R
Sbjct: 392 LAQRKEERR 400
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++ + + +F + G+VV V ++ YG+V+ + ++ A+ L
Sbjct: 39 LYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARALDIL 98
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N N KP++I S + P+ + T +F+ NL + + F +G ++ C +
Sbjct: 99 NFTPFNNKPIRI--MYSHRDPSIRKSGTGNIFIKNLDKTIDHKALHDTFSSFGNILSCKV 156
Query: 147 V-------RNYGFVHIDSPDINK-CIKELNGMMVDGK 175
R YGFV D+ + + I +LNGM+++ K
Sbjct: 157 ATDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDK 193
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 86/168 (51%), Gaps = 20/168 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G+ IFI N++ + + F +G ++ C V K +GFV E +E
Sbjct: 126 PSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAMDEAGQSKGFGFVQYEKEE 185
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPN-----TPTTKVFVGNLSDNTRAPEVRELF 135
+ AIK LNG ++N+KP+ + ++ + T VFV NLS++T ++ ++F
Sbjct: 186 AAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKVF 245
Query: 136 VPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
YG++ ++ R +GF++ ++PD ++ ++ELNG ++ K
Sbjct: 246 GEYGSITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELNGKKINDK 293
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 80/166 (48%), Gaps = 25/166 (15%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G++ S + LF + G+VV V ++ Y +V+ N + A+
Sbjct: 45 TTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARAL 104
Query: 87 KELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
+ LN ++N KP+++ + ++ R G + +F+ NL + E F +GT+
Sbjct: 105 EVLNFAVLNNKPIRVMYSNRDPSSRRSG----SANIFIKNLDKTIDNKTLHETFSSFGTI 160
Query: 142 VECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 179
+ C + + +GFV + + + IK LNGM+++ KP+ V
Sbjct: 161 LSCKVAMDEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFV 206
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 87/185 (47%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ E + +F +YG + V+ + +GF++ EN + A++ELN
Sbjct: 227 VFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELN 286
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ +N+K + +AA +G N +++ NL D+
Sbjct: 287 GKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLN-----LYLKNLDDSIGD 341
Query: 129 PEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180
++RELF +G + ++R+ GFV + + ++ + E+NG M+ GKP+ V
Sbjct: 342 DQLRELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVA 401
Query: 181 ISTSR 185
+ +
Sbjct: 402 FAQRK 406
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKE 88
+++ N++ + +R LF +GK+ V+ K GFV EE A+ E
Sbjct: 328 LNLYLKNLDDSIGDDQLRELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTE 387
Query: 89 LNGQIVNEKPLKIEAATSRK 108
+NG++++ KPL + A ++
Sbjct: 388 MNGKMISGKPLYVAFAQRKE 407
Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 163
PTT ++VG+L + ++ ELF G VV + R+ Y +V+ +P D +
Sbjct: 44 PTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARA 103
Query: 164 IKELNGMMVDGKPMKVQIS 182
++ LN +++ KP++V S
Sbjct: 104 LEVLNFAVLNNKPIRVMYS 122
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 131 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGY 190
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T ++V N+S
Sbjct: 191 GFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIST 250
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E RELF YG + + R+ +GFV+ + + K ++EL+G G+
Sbjct: 251 EASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEELHGKDFRGQD 310
Query: 177 MKV 179
+ V
Sbjct: 311 LYV 313
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/224 (19%), Positives = 83/224 (37%), Gaps = 76/224 (33%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ S + R LFEKYG + + ++ +GFV+ E A++EL+
Sbjct: 243 IYVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEELH 302
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K +++ NL D+ ++R+
Sbjct: 303 GKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQ 362
Query: 134 LFVPYGTVVECDIVRN-------------------------------------------- 149
+F +G + ++R+
Sbjct: 363 MFAEFGPITSAKVMRDAPSDGSDDDKEKEEDNEKEPEAKEEAKETEEEDADKKADKKGDK 422
Query: 150 -------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+GFV +P D K + E+N M++GKP+ V ++ +
Sbjct: 423 KLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRK 466
>gi|148701116|gb|EDL33063.1| mCG8382, isoform CRA_d [Mus musculus]
gi|148701117|gb|EDL33064.1| mCG8382, isoform CRA_d [Mus musculus]
Length = 118
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 66/115 (57%), Gaps = 5/115 (4%)
Query: 36 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G +
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL 60
Query: 95 NE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+ L +E SR P T K+FVGN+S + E+R LF G V+ECD+V+
Sbjct: 61 RPGRALVVE--MSRPRP-LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 116 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGM-MV 172
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61
Query: 173 DGKPMKVQISTSR 185
G+ + V++S R
Sbjct: 62 PGRALVVEMSRPR 74
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 28/35 (80%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 69
T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK
Sbjct: 78 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112
>gi|327289704|ref|XP_003229564.1| PREDICTED: hypothetical protein LOC100563639 [Anolis carolinensis]
Length = 397
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 43/59 (72%), Gaps = 4/59 (6%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDV----VKNYGFVHMENDEEGRTAIKELNG 91
KI++GN+ G E IRPLFE +G VV CDV VK+Y FVHM+N+E+GR AIK LNG
Sbjct: 67 KIYVGNLPKGCGTEDIRPLFEDFGPVVACDVVKSGVKDYAFVHMDNEEDGRAAIKHLNG 125
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDI----VRNYGFVHIDS-PDINKCIKELNGM 170
K++VGNL ++R LF +G VV CD+ V++Y FVH+D+ D IK LNGM
Sbjct: 67 KIYVGNLPKGCGTEDIRPLFEDFGPVVACDVVKSGVKDYAFVHMDNEEDGRAAIKHLNGM 126
Query: 171 MVDGKPMKVQIS 182
+ G + VQ S
Sbjct: 127 ELKGSYIAVQRS 138
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 21/168 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C + K YGFVH E +E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIASDENGSKGYGFVHFETEEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
R AI+++NG ++N K + + RK G V++ N D ++REL
Sbjct: 151 ARQAIEKVNGMLLNGKKVYVGKFIPRKERIALLGDKMKRFNNVYIKNFGDELDDDKIREL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDG 174
F P+G ++ ++ R +GFV + P+ K + LNGM + G
Sbjct: 211 FDPFGKIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDNLNGMELGG 258
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 79/160 (49%), Gaps = 20/160 (12%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++P + ++ F G V+ V ++ Y +V+ + + A+ +
Sbjct: 13 LYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N + +P++I S++ P+ + VF+ NL + + + F +G ++ C I
Sbjct: 73 NFDTIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKI 130
Query: 147 V------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 179
+ YGFVH ++ + + I+++NGM+++GK + V
Sbjct: 131 ASDENGSKGYGFVHFETEEAARQAIEKVNGMLLNGKKVYV 170
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + IR LF+ +GK++ V+ + +GFV E E A+ LN
Sbjct: 193 VYIKNFGDELDDDKIRELFDPFGKIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDNLN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK------------------VFVGNLSDNTRAPEVR 132
G + + +K K ++V NL D +R
Sbjct: 253 GMELGGGKVLYAGRAQKKAERQAELKDKFEKIKMERINRYQGVNLYVKNLDDVVDDERLR 312
Query: 133 ELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
+ F +GT+ ++ + +GFV SP+ K + E+NG ++ KP+ V ++ +
Sbjct: 313 KEFSQFGTITSARVMSEGGRSKGFGFVCFSSPEEATKAVTEMNGRIIVSKPLYVALAQRK 372
Query: 186 VRQR 189
+R
Sbjct: 373 EDRR 376
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G+ IFI N++ + + F +G ++ C V K +GFV + E
Sbjct: 119 PSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGE 178
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
++AIK LNG ++N+KP+ + ++ K VFV NLS++T ++ ++F
Sbjct: 179 AAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIF 238
Query: 136 VPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
YG + I+ R +GF++ SP D + ++ELNG ++ K V
Sbjct: 239 GAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYV 290
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 87/185 (47%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ E + +F YG + ++ + +GF++ ++ ++ A++ELN
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ +N+K + +AA +G N +++ NL D+
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLN-----LYMKNLDDSIGD 334
Query: 129 PEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180
++ ELF YG + C I+R+ GFV + + ++ + E+NG M+ GKP+ V
Sbjct: 335 DQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVA 394
Query: 181 ISTSR 185
+ +
Sbjct: 395 FAQRK 399
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 77/163 (47%), Gaps = 25/163 (15%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G++ + + LF + G+V+ V ++ Y +V+ N + A++ L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 90 NGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
N +N KP+++ + ++ R G + +F+ NL + + F +G ++ C
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSRRSG----SANIFIKNLDKAIDHKTLHDTFSAFGNILSC 156
Query: 145 DIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 179
+ + +GFV D + + IK LNGM+++ KP+ V
Sbjct: 157 KVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV 199
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKE 88
+++ N++ + + LF YGK+ C ++ K GFV EE A+ E
Sbjct: 321 LNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTE 380
Query: 89 LNGQIVNEKPLKIEAATSRK 108
+NG++++ KPL + A ++
Sbjct: 381 MNGKMISGKPLYVAFAQRKE 400
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G+ IFI N++ + + F +G ++ C V K +GFV + E
Sbjct: 119 PSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGE 178
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
++AIK LNG ++N+KP+ + ++ K VFV NLS++T ++ ++F
Sbjct: 179 AAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIF 238
Query: 136 VPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
YG + I+ R +GF++ SP D + ++ELNG ++ K V
Sbjct: 239 GAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYV 290
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 87/185 (47%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ E + +F YG + ++ + +GF++ ++ ++ A++ELN
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ +N+K + +AA +G N +++ NL D+
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLN-----LYMKNLDDSIGD 334
Query: 129 PEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180
++ ELF YG + C I+R+ GFV + + ++ + E+NG M+ GKP+ V
Sbjct: 335 DQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVA 394
Query: 181 ISTSR 185
+ +
Sbjct: 395 FAQRK 399
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 77/163 (47%), Gaps = 25/163 (15%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G++ + + LF + G+V+ V ++ Y +V+ N + A++ L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 90 NGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
N +N KP+++ + ++ R G + +F+ NL + + F +G ++ C
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSRRSG----SANIFIKNLDKAIDHKTLHDTFSAFGNILSC 156
Query: 145 DIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 179
+ + +GFV D + + IK LNGM+++ KP+ V
Sbjct: 157 KVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV 199
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKE 88
+++ N++ + + LF YGK+ C ++ K GFV EE A+ E
Sbjct: 321 LNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTE 380
Query: 89 LNGQIVNEKPLKIEAATSRK 108
+NG++++ KPL + A ++
Sbjct: 381 MNGKMISGKPLYVAFAQRKE 400
>gi|260943806|ref|XP_002616201.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
gi|238849850|gb|EEQ39314.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
Length = 419
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+F+G ++ E ++ FE+ G V+ V+ + YG+V + A+ EL
Sbjct: 183 LFVGRLSWNVDDEWLKREFEEAGGVISARVMIERSTGKSRGYGYVDFSSKAAAEKALNEL 242
Query: 90 NGQIVNEKPLKIEAATSRKG--------------PNTPTTKVFVGNLSDNTRAPEVRELF 135
G+ ++ +P+ ++ +T + P+ P+ +F+GNLS NT ++ E+F
Sbjct: 243 QGKEIDGRPVNLDMSTGKPKTPASNDRAKKFGDVPSAPSDTLFIGNLSFNTERNKLFEIF 302
Query: 136 VPYGTVVECDI--------VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
YGTVV C + + +G+V S + + LNG +DG+P ++ ST R
Sbjct: 303 GEYGTVVSCRLPTHPDTQQPKGFGYVQFSSVEEAQNALNSLNGEYLDGRPCRLDFSTPR 361
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 21/171 (12%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P G +FI N++P + + F +G V+ C + K Y
Sbjct: 545 RIMFSHRD-PSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGY 603
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKP----LKIEAATSRKGPNTPT-TKVFVGNLSDNT 126
GFV E +E + AIK LNG ++N+K L + +G +P T V+V NLS+ T
Sbjct: 604 GFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSETT 663
Query: 127 RAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNG 169
+++ +F YG++ ++R+ +GFV+ S D ++ LNG
Sbjct: 664 TDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNG 714
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 82/178 (46%), Gaps = 33/178 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ + ++ +F KYG + V+++ +GFV+ ++ + A++ LN
Sbjct: 654 VYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLN 713
Query: 91 GQIVNEKPL------------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G N+ + K E K T +++ NL D+ +++
Sbjct: 714 GATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKLK 773
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
ELF +GT+ C ++ + GFV +P + + + +NG M+ KP+ V ++
Sbjct: 774 ELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVA 831
>gi|195573327|ref|XP_002104645.1| GD18328 [Drosophila simulans]
gi|194200572|gb|EDX14148.1| GD18328 [Drosophila simulans]
Length = 824
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 22/169 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S +L+ LF G V C +++ Y F+ N + TA+ +N +
Sbjct: 9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAASTALTAMNKR 68
Query: 93 IVNEKPLKIEAATSRKGPNTPTTKV------FVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ EK +K+ ATS N P T + FVG+LS +RE F P+G + C I
Sbjct: 69 LFLEKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRI 126
Query: 147 VRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
VR+ Y FV + + I+ +NG + + ++ ST ++
Sbjct: 127 VRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKL 175
Score = 52.8 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 26/156 (16%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P IF+G+++P E +R F +G++ C +V K Y FV
Sbjct: 85 NQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFV 144
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP----------------NTPT-TKVFVG 120
E AI+ +NGQ + + ++ +T + P ++PT T V+ G
Sbjct: 145 KKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPREPSKXXXXXEVYNQSSPTNTTVYCG 204
Query: 121 NLSDNTRAPEV-RELFVPYGTVVECDIVRNYGFVHI 155
N + ++ + FV +G + + + ++ GF I
Sbjct: 205 GFPPNVISDDLMHKHFVQFGPIQDVRVFKDKGFSFI 240
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 132 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGY 191
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T +++ N+S
Sbjct: 192 GFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYIKNIST 251
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E RELF YG + + R+ +GFV+ + + K ++EL+G G+
Sbjct: 252 EASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEELHGKDFRGQD 311
Query: 177 MKV 179
+ V
Sbjct: 312 LYV 314
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/224 (19%), Positives = 83/224 (37%), Gaps = 76/224 (33%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I+I N++ S + R LFEKYG + + ++ +GFV+ E A++EL+
Sbjct: 244 IYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEELH 303
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K +++ NL D+ ++R+
Sbjct: 304 GKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQ 363
Query: 134 LFVPYGTVVECDIVRN-------------------------------------------- 149
+F +G + ++R+
Sbjct: 364 MFAEFGPITSAKVMRDAPSDGSDDDKEKEEDNEKEPEAKEEAKETEEEDADKKADKKGDK 423
Query: 150 -------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+GFV +P D K + E+N M++GKP+ V ++ +
Sbjct: 424 KLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRK 467
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 20/165 (12%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+F+GN+ P + + LF +G++V+ VV K YGFV + AIK +
Sbjct: 231 LFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIKHM 290
Query: 90 NGQIVNEKPLKIEAATSRKGPNTP---TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
NG++V + L++ A + +T +K++V NL ++ +LFVPYG V +
Sbjct: 291 NGRMVEGRMLEVRLAGAPSSGSTKEMDMSKLYVCNLPLLLHEDKLHDLFVPYGQVTSVKV 350
Query: 147 VRN--------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQIS 182
+R+ YGFV P I +LNG +++GK M+V+++
Sbjct: 351 MRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRVA 395
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 34/179 (18%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKE 88
K+++ N+ + + LF YG+V V+ K YGFV + + AI +
Sbjct: 320 KLYVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQ 379
Query: 89 LNGQIVNEKPLKIE-AATSRKGPNTPT----------------TKVFVGNLSDNTRAPEV 131
LNG ++ K +++ AA S G NT + V+V NL ++
Sbjct: 380 LNGHLIEGKKMEVRVAAVSSSGSNTSVQAISETDHQLTKEVDMSNVYVQNLPLLMNTDKL 439
Query: 132 RELFVPYGTVVECD--------IVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQI 181
LF+PYG V I + YGFV P D + ELNG +V+G+ + V++
Sbjct: 440 LNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVIELNGCLVEGRKILVRV 498
Score = 52.8 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 26/171 (15%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+++ N+ + + + LF YGKV V K YGFV + + A+ EL
Sbjct: 425 VYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVIEL 484
Query: 90 NGQIVNEKPLKIEA----------ATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
NG +V + + + A +R + ++V N+ + ++ ELF+P+G
Sbjct: 485 NGCLVEGRKILVRVRPPSSPVESHANNRTLKEIDMSNLYVCNIPSSMNKAKLVELFLPFG 544
Query: 140 TVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQIS 182
+ +V + YGFV DS + + +NG +++G+ + V+++
Sbjct: 545 RITHAMVVEQSNNSSKGYGFVKFADSHCAAEAVAMMNGALIEGETISVRVA 595
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 9/77 (11%)
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIK 165
T +FVGNL + + ++ ELF+P+G +V+ +V + YGFV P + IK
Sbjct: 229 TNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIK 288
Query: 166 ELNGMMVDGKPMKVQIS 182
+NG MV+G+ ++V+++
Sbjct: 289 HMNGRMVEGRMLEVRLA 305
Score = 43.5 bits (101), Expect = 0.047, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 27/172 (15%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVK-NYGFVHMENDEEGRTAIKELNG-QI-- 93
+++G V + E + +F YG++V+ YG + N AI L+G QI
Sbjct: 719 LYVGRVPSAVTCEQLVQIFCLYGEIVQAKKFDAGYGMIRYANASSAAAAIDHLDGYQIGG 778
Query: 94 ------VNEKPLKIEAATSRKGPNTP--------TTKVFVGNLSDNTRAPEVRELFVPYG 139
V P + + AT + P TP T ++VG L ++ ELF+P G
Sbjct: 779 STLVVRVAGLPAESDVATFARTPQTPGNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCG 838
Query: 140 TVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQIS 182
+ + +V + +GFV D+ I +NG +DG + V+ +
Sbjct: 839 QITQAKVVVDKFTGVSKGFGFVRFADAYSAATAITHMNGYPLDGHMLAVRTA 890
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 20/166 (12%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAI 86
G+ IFI N++ + + F +G ++ C V K +GFV + E ++AI
Sbjct: 125 GSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAI 184
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELFVPYGTV 141
K LNG ++N+KP+ + ++ K VFV NLS++T ++ ++F YG +
Sbjct: 185 KSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNI 244
Query: 142 VECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
I+ R +GF++ SP D + ++ELNG ++ K V
Sbjct: 245 TSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYV 290
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 86/185 (46%), Gaps = 44/185 (23%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ E + +F YG + ++ + +GF++ ++ ++ A++ELN
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ +N+K + +AA +G N +++ NL D+
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLN-----LYMKNLDDSIGD 334
Query: 129 PEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180
++ ELF YG + C I+R+ GFV + P I + E+NG M+ GKP+ V
Sbjct: 335 DQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTLPFIQ--LTEMNGKMISGKPLYVA 392
Query: 181 ISTSR 185
+ +
Sbjct: 393 FAQRK 397
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 77/163 (47%), Gaps = 25/163 (15%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G++ + + LF + G+V+ V ++ Y +V+ N + A++ L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 90 NGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
N +N KP+++ + ++ R G + +F+ NL + + F +G ++ C
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSRRSG----SANIFIKNLDKAIDHKTLHDTFSAFGNILSC 156
Query: 145 DIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 179
+ + +GFV D + + IK LNGM+++ KP+ V
Sbjct: 157 KVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV 199
>gi|358339074|dbj|GAA47201.1| RNA-binding protein 4.1 [Clonorchis sinensis]
Length = 328
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN+NP T +R FE YGKV ECDVV NYGFVHME D + A+ L I++
Sbjct: 3 KLFVGNLNPETKAADLRKKFEAYGKVTECDVVNNYGFVHMEKDSDAEAALAGLQDSILDG 62
Query: 97 KPLKIEAATSRKGPNTPTTK 116
+ +E + ++G P +
Sbjct: 63 VKINVERSHGKRGGPGPMRR 82
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 174
K+FVGNL+ T+A ++R+ F YG V ECD+V NYGFVH++ D + L ++DG
Sbjct: 3 KLFVGNLNPETKAADLRKKFEAYGKVTECDVVNNYGFVHMEKDSDAEAALAGLQDSILDG 62
Query: 175 KPMKVQISTSRVRQRPG 191
+ V+ S + R PG
Sbjct: 63 VKINVERSHGK-RGGPG 78
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 21/181 (11%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P G IFI N++ + + F +G ++ C V K Y
Sbjct: 106 RIMYSHRD-PSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGY 164
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNT 126
GFV + +E + AI++LNG ++N+K P + G VFV NLS++T
Sbjct: 165 GFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSEST 224
Query: 127 RAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMK 178
E+++ F +GT+ ++R+ +GFV+ +S D + ++ LNG +D K
Sbjct: 225 TDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWY 284
Query: 179 V 179
V
Sbjct: 285 V 285
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 95/189 (50%), Gaps = 42/189 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ + ++ F ++G + V+++ +GFV+ E+ ++ A++ LN
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALN 274
Query: 91 GQIVNEKP---------------LKI-------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ +++K LKI EAA +G N ++V NL D+
Sbjct: 275 GKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGAN-----LYVKNLDDSIAD 329
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+++ELF YGT+ C ++R+ GFV +P + ++ + E+NG MV KP+ V
Sbjct: 330 EKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVT 389
Query: 181 ISTSRVRQR 189
++ + +R
Sbjct: 390 LAQRKEDRR 398
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 21/160 (13%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G+++ + + LF + G+VV V ++ YG+V+ N ++ A+
Sbjct: 33 TTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARAL 92
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
LN +N +P++I S + P+ + +F+ NL + + F +G ++
Sbjct: 93 DVLNFTPLNNRPIRI--MYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILS 150
Query: 144 CDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
C + + YGFV D+ + K I++LNGM+++ K
Sbjct: 151 CKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDK 190
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 135 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDENGNSKGY 194
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T V+V N++
Sbjct: 195 GFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANYTNVYVKNINL 254
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E RELF YG V + R+ +GFV+ + D K ++ELNG G+
Sbjct: 255 EVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFGFVNFSTHDSAAKAVEELNGKEFRGQE 314
Query: 177 MKV 179
+ V
Sbjct: 315 LYV 317
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 65/146 (44%), Gaps = 24/146 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+N + E R LF KYG+V + ++ +GFV+ + A++ELN
Sbjct: 247 VYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFGFVNFSTHDSAAKAVEELN 306
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA + K +++ NL+D+ ++R+
Sbjct: 307 GKEFRGQELYVGRAQKKHEREEELRKSYEAARAEKANKYQGVNLYIKNLADDIDDDKLRQ 366
Query: 134 LFVPYGTVVECDIVRNYGFVHIDSPD 159
+F +G + ++R+ H S D
Sbjct: 367 MFSEFGPITSAKVMRDNPPDHHHSAD 392
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 130 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGASKGY 189
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T V+V N+S
Sbjct: 190 GFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNISP 249
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKP 176
+ E RELF YG V + R+ +GFV+ + + K + ELNG G+
Sbjct: 250 DVTDNEFRELFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHEAAYKAVDELNGNDFRGQE 309
Query: 177 MKV 179
+ V
Sbjct: 310 LYV 312
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/224 (19%), Positives = 80/224 (35%), Gaps = 76/224 (33%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++P + R LFEKYG V + ++ +GFV+ E A+ ELN
Sbjct: 242 VYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHEAAYKAVDELN 301
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G + L + EAA K +++ NL D+ ++R+
Sbjct: 302 GNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDDKLRQ 361
Query: 134 LFVPYGTVVECDIVRN-------------------------------------------- 149
+F +G + ++R+
Sbjct: 362 MFSEFGPITSAKVMRDSLQEGEEEVKDQEKDKENQKEAENEAEAESAENAEKKAEKKGDK 421
Query: 150 -------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+GFV +P D K + E+N M++ KP+ V ++ +
Sbjct: 422 KLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRK 465
>gi|133247|sp|P28644.1|ROC1_SPIOL RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP
Length = 233
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ E + +F+ G V E D + +GFV M EE A++
Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115
Query: 89 LNGQIVNEKPLKIEAATSRKGPN-------TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
LNG ++ + L + A R P P+ +V+VGNL + + +LF +G V
Sbjct: 116 LNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKV 175
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
V +V R +GFV + S ++N I L+G +DG+ ++V ++ R R+
Sbjct: 176 VSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRR 231
>gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
Length = 226
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ E + +F+ G V E D + +GFV M EE A++
Sbjct: 49 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 108
Query: 89 LNGQIVNEKPLKIEAATSRKGPN-------TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
LNG ++ + L + A R P P+ +V+VGNL + + +LF +G V
Sbjct: 109 LNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKV 168
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
V +V R +GFV + S ++N I L+G +DG+ ++V ++ R R+
Sbjct: 169 VSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRR 224
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N++P + + F +GK++ C V K +
Sbjct: 121 CRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNSKCF 180
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E R AI+ +NG ++N++ + + S+K + T V+V N+
Sbjct: 181 GFVHYETAEAARAAIENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDL 240
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKP 176
E+R LF PYG + + ++ +GFV+ +S + K ++ELN ++G+
Sbjct: 241 GFSEEEMRNLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQN 300
Query: 177 MKV 179
+ V
Sbjct: 301 LYV 303
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ G S E +R LFE YGK+ + K+ +GFV+ E+ E A++ELN
Sbjct: 233 VYVKNIDLGFSEEEMRNLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELN 292
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ +N + L + E A K +FV NL D+ + ++ E
Sbjct: 293 DKDINGQNLYVGRAQKKRERIEELKRQYETARLEKLSKYQGVNLFVKNLDDSIDSVKLEE 352
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K I E+N M GKP+ V ++ +
Sbjct: 353 EFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQRK 412
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R +++ + + + +Q
Sbjct: 413 DVRRSQLEQQIQARNQMRMQ 432
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G +NP + + +F G+V V ++ Y +V+ E+G AI +L
Sbjct: 52 LYVGELNPSVNEASLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIDDL 111
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N +++ +P +I S++ P+ +F+ NL + + F +G ++ C +
Sbjct: 112 NYSLIDGRPCRI--MWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGKILSCKV 169
Query: 147 VRN-------YGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
+ +GFVH ++ + + I+ +NGM+++ + + V S+ + +E+
Sbjct: 170 ATDEQGNSKCFGFVHYETAEAARAAIENVNGMLLNDREVYVGKHVSKKDRESKFEEM 226
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 85 AIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
AI+E N NE +AA S + P+T + ++VG L+ + + E+F P G V
Sbjct: 24 AIQETNVSSGNEGE---DAADSTQLPDT-SASLYVGELNPSVNEASLFEIFSPVGQVSSI 79
Query: 145 DIVRN--------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182
+ R+ Y +V+ D K I +LN ++DG+P ++ S
Sbjct: 80 RVCRDAVTKKSLGYAYVNFHKLEDGEKAIDDLNYSLIDGRPCRIMWS 126
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 21/181 (11%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P G IFI N++ + + F +G ++ C V + Y
Sbjct: 112 RIMYSYRD-PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGY 170
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNT 126
GFV +N+E ++AI +LNG ++N+K P + T V+V NLS+ T
Sbjct: 171 GFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETT 230
Query: 127 RAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMK 178
+++++F +G + ++R+ +GFV+ D P D + ++ LNG D K
Sbjct: 231 TEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290
Query: 179 V 179
V
Sbjct: 291 V 291
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 92/184 (50%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ + ++ +F ++G + V+++ +GFV+ ++ ++ +++ LN
Sbjct: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
Query: 91 GQIVNEKPLKIEAATSR-------KGPNTPTTK----------VFVGNLSDNTRAPEVRE 133
G+ ++K + A + KG + K ++V NL D+ +++E
Sbjct: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF +GT+ C ++R+ GFV + + +K + E+NG MV KP+ V ++ +
Sbjct: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
Query: 186 VRQR 189
+R
Sbjct: 401 EERR 404
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++ + + LF + G+VV V ++ YG+V+ E A+ EL
Sbjct: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N +N KP++I S + P + +F+ NL + + + F +G ++ C +
Sbjct: 102 NFTPLNGKPIRI--MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
Query: 147 V-------RNYGFVHIDSPDINK-CIKELNGMMVDGK 175
R YGFV D+ + K I +LNGM+++ K
Sbjct: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
>gi|308475439|ref|XP_003099938.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
gi|308266205|gb|EFP10158.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
Length = 408
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 86/172 (50%), Gaps = 24/172 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+F+GN++P + E + LF + G V + ++ + + FV + + A++ +
Sbjct: 40 LFVGNLDPAITDEFLATLFNQIGAVTKAKIIFDCFQGLNDPFAFVEFSDHNQASQALQSM 99
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTT----KVFVGNLSDNTRAPEVRELFVPYGTVV 142
NG+ + E+ +++ A P N P T VFVG+LS + ++RE F+P+G V
Sbjct: 100 NGRQLLEREMRVNWAVEPNQPGDRNKPETSRHFHVFVGDLSAEIDSTKLREAFLPFGEVS 159
Query: 143 ECDIVRN--------YGFV-HIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
E I+R+ YGFV + D + I+++NG + + ++ +T +
Sbjct: 160 EAKIIRDNATNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRTNWATRK 211
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 52/200 (26%)
Query: 25 RNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHM 76
RN P S F +F+G+++ +R F +G+V E ++ K YGFV
Sbjct: 123 RNKPETSR--HFHVFVGDLSAEIDSTKLREAFLPFGEVSEAKIIRDNATNKAKGYGFVSY 180
Query: 77 ENDEEGRTAIKELNGQIVNEKPLKIEAATSR----------------------------- 107
E+ AI+++NGQ + + ++ AT +
Sbjct: 181 PRREDAERAIEQMNGQWLGRRTIRTNWATRKPEEEGGERRERDRNERGDRPHRGEGRHHH 240
Query: 108 ---------KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--YGFVHID 156
+ T V+VGN++ T E+R F +G +VE I ++ Y FV +
Sbjct: 241 FEKTYDEVFREAAADNTSVYVGNINSLTE-DEIRRGFERFGQIVEVRIFKSQGYAFVKFE 299
Query: 157 SPD-INKCIKELNGMMVDGK 175
+ + I ++N V G+
Sbjct: 300 QKESAARAIVQMNNQDVSGQ 319
>gi|392927018|ref|NP_509705.3| Protein TIAR-3 [Caenorhabditis elegans]
gi|211970450|emb|CAB01717.3| Protein TIAR-3 [Caenorhabditis elegans]
Length = 450
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 34/184 (18%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
F +F+G+++ S EL++ F K+G+V E V+ K YGFV N + AI
Sbjct: 225 FHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIA 284
Query: 88 ELNGQIVNEKPLKIEAAT------------------SRKGPNTPTTKVFVGNLSDNTRAP 129
+NG+ + ++ ++ A S K NT V+VGN+S T
Sbjct: 285 GMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNT---SVYVGNISQQTTDA 341
Query: 130 EVRELFVPYGTVVECDIVRN--YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
++R+LF YG + E I + Y FV + + K I E+NG + G +V+ S R
Sbjct: 342 DLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMNGKEMAGN--QVRCSWGRT 399
Query: 187 RQRP 190
+ P
Sbjct: 400 QAVP 403
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--YGFVHMENDEEGRTAIKELNGQIVN 95
+++GN++ T+ +R LF YG + E + K Y FV E E AI E+NG+ +
Sbjct: 329 VYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMNGKEMA 388
Query: 96 EKPLKIEAATSRKGPN 111
++ ++ PN
Sbjct: 389 GNQVRCSWGRTQAVPN 404
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 22/174 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 91 PSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQDEKGQSKGYGFVHFETEE 150
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
T+I+++NG ++NEK + + SRK T V+V N ++ + E
Sbjct: 151 SANTSIEKVNGMLLNEKKVFVGRFISRKEREKELGEKAKLFTNVYVKNFGEDLTEEALHE 210
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGM-MVDGKPMKV 179
+F YG++ ++ R +GFV ++PD + ++ELN + DGK + V
Sbjct: 211 MFEKYGSITSHRVMMKDGKSRGFGFVAFENPDAAERAVQELNAKELSDGKVLYV 264
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 41/184 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N + E + +FEKYG + V+ + +GFV EN + A++ELN
Sbjct: 194 VYVKNFGEDLTEEALHEMFEKYGSITSHRVMMKDGKSRGFGFVAFENPDAAERAVQELNA 253
Query: 92 --------------QIVNEKP---------LKIEAATSRKGPNTPTTKVFVGNLSDNTRA 128
Q NE+ LK+E T G N ++V NL D
Sbjct: 254 KELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVN-----LYVKNLDDTIDD 308
Query: 129 PEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQI 181
+R+ F PYGT+ ++ + +GFV +PD K + E+NG +V KP+ V +
Sbjct: 309 ERLRKEFAPYGTITSAKVMLDEGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVAL 368
Query: 182 STSR 185
+ +
Sbjct: 369 AQRK 372
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
RF+Q ++ +++RY +++ N++ E +R F YG +
Sbjct: 280 RFEQLKMERLTRYHG------------------VNLYVKNLDDTIDDERLRKEFAPYGTI 321
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV +E A+ E+NG+IV KPL + A ++
Sbjct: 322 TSAKVMLDEGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALAQRKE 373
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P +GT +FI N++P + + F +GK++ C V K Y
Sbjct: 140 CRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNSKGY 199
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH ++ + AI+ +NG ++N+K + + SR+ + T V+V NL
Sbjct: 200 GFVHFDSVDSANAAIEHVNGMLLNDKKVYVGHHISRRDRQSKFEALKANFTNVYVKNLDL 259
Query: 125 NTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKP 176
+T E +LF YG + + R + FV+ + D + + ELN GK
Sbjct: 260 DTTEEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHDSAQQAVDELNDFEYKGKK 319
Query: 177 MKV 179
+ V
Sbjct: 320 LYV 322
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
++IG ++P + ++ LF G V V ++ Y +V+ N E+G A+ EL
Sbjct: 71 LYIGELDPMVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 130
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ +P +I S++ P+ T VF+ NL + + F +G ++ C +
Sbjct: 131 NYTLIKGRPCRI--MWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKV 188
Query: 147 V-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
+ YGFVH DS D N I+ +NGM+++ K + V SR
Sbjct: 189 AVDELGNSKGYGFVHFDSVDSANAAIEHVNGMLLNDKKVYVGHHISR 235
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 42/205 (20%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ E LFEKYGK+ + K+ + FV+ + + A+ ELN
Sbjct: 252 VYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHDSAQQAVDELN 311
Query: 91 -------------GQIVNEKP---------LKIEAATSRKGPNTPTTKVFVGNLSDNTRA 128
Q +E+ +K+E +G N +FV NL D
Sbjct: 312 DFEYKGKKLYVGRAQKKHERQEELRKQYEQMKLEKINKYQGVN-----LFVKNLQDEIDD 366
Query: 129 PEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQ 180
++ F +GT+ ++ + +GFV +P+ K I E+N M+ GKP+ V
Sbjct: 367 ERLKSEFSAFGTITSAKVMTDENNKSKGFGFVCYSNPEEATKAIAEMNQRMLAGKPLYVA 426
Query: 181 ISTSRVRQRPGVDEVVIGQKSVPVQ 205
++ + +R ++ + + +Q
Sbjct: 427 LAQRKEVRRSQLEAQIQARNQFRLQ 451
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 20/168 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C V K YGFV +++E
Sbjct: 105 PTIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDPSGQSKGYGFVQFDSEE 164
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
+ AI++LNG ++N+K + + ++ +T T K VFV NLS+ T ++ + F
Sbjct: 165 AAQKAIEKLNGMLLNDKQVYVGPFLRKQERDTATDKMRFNNVFVKNLSETTTEEDLNKTF 224
Query: 136 VPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 175
+GT+ ++R+ +GFV+ + + D K ++ LNG +D K
Sbjct: 225 GEFGTITSIVVMRDGDGKSKCFGFVNFENAEDAAKAVEALNGKKIDDK 272
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 93/189 (49%), Gaps = 42/189 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ E + F ++G + V+++ +GFV+ EN E+ A++ LN
Sbjct: 206 VFVKNLSETTTEEDLNKTFGEFGTITSIVVMRDGDGKSKCFGFVNFENAEDAAKAVEALN 265
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ +++K + EAA +G N +++ NL D+
Sbjct: 266 GKKIDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKFQGAN-----LYIKNLDDSIGD 320
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+++ELF P+GT+ C ++R+ GFV +P + ++ + E+NG +V KP+ V
Sbjct: 321 EKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKIVVSKPLYVA 380
Query: 181 ISTSRVRQR 189
++ + +R
Sbjct: 381 LAQRKEDRR 389
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 21/160 (13%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G++ + + LF + G+VV V ++ YG+V+ N ++ A+
Sbjct: 24 TTSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARAL 83
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
+ LN +N P+++ S + P + +F+ NL + + F +G ++
Sbjct: 84 EMLNFTPLNGSPIRV--MYSHRDPTIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 141
Query: 144 CDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
C + + YGFV DS + K I++LNGM+++ K
Sbjct: 142 CKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDK 181
Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DI 160
PN TT ++VG+L + ++ +LF G VV + R+ YG+V+ +P D
Sbjct: 20 PNFVTTSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDA 79
Query: 161 NKCIKELNGMMVDGKPMKVQIS 182
+ ++ LN ++G P++V S
Sbjct: 80 ARALEMLNFTPLNGSPIRVMYS 101
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 20/168 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G+ IFI N++ + + F +G ++ C V K +GFV E +E
Sbjct: 117 PSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVATDDMGQSKGFGFVQYEKEE 176
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
++A+K LNG ++N+KP+ + ++ + K VFV NLS++T ++ ++F
Sbjct: 177 FAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKARFNNVFVKNLSESTTKEDLVKIF 236
Query: 136 VPYGTVVECDIV-------RNYGFVHIDSPDIN-KCIKELNGMMVDGK 175
YG + ++ R +GF++ +SPD + ++ELNG ++ K
Sbjct: 237 SEYGNITSAVVMVGTDGKSRCFGFINFESPDDAVRAVEELNGKKINDK 284
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 91/199 (45%), Gaps = 32/199 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ E + +F +YG + V+ + +GF++ E+ ++ A++ELN
Sbjct: 218 VFVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSRCFGFINFESPDDAVRAVEELN 277
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ +N+K + E + +++ NL D ++RE
Sbjct: 278 GKKINDKEWYCGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGISDDQLRE 337
Query: 134 LFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
LF +G + C ++R+ GFV + + ++ I E+NG M+ GKP+ V + +
Sbjct: 338 LFSTFGKITSCKVMRDQNGVSKGSGFVAFSTREEASQAITEMNGKMLSGKPLYVAFAQRK 397
Query: 186 VRQRPGVDEVVIGQKSVPV 204
++ + + VP+
Sbjct: 398 EERKAMLQAQFSQMRPVPI 416
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 78/166 (46%), Gaps = 25/166 (15%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G++ + + LF + G+VV V ++ Y +V+ N + A+
Sbjct: 36 TTSLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARAL 95
Query: 87 KELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
+ LN +N KP+++ + ++ R G + +F+ NL + + F +G +
Sbjct: 96 EMLNFVPLNNKPIRVMYSNRDPSSRRSG----SANIFIKNLDKTIDNKTLHDTFSAFGAI 151
Query: 142 VECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 179
+ C + + +GFV + + + +K LNGM+++ KP+ V
Sbjct: 152 LSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPVYV 197
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 163
PTT ++VG+L + ++ ELF G VV + R+ Y +V+ +P D +
Sbjct: 35 PTTSLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARA 94
Query: 164 IKELNGMMVDGKPMKVQIS 182
++ LN + ++ KP++V S
Sbjct: 95 LEMLNFVPLNNKPIRVMYS 113
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 20/168 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G+ IFI N++ + + F +G ++ C V K +GFV E +E
Sbjct: 3 PSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEE 62
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
++A+K LNG ++N+KP+ + ++ + K VFV NLS++T ++ ++F
Sbjct: 63 SAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKAKFNNVFVKNLSESTTKDDLVKVF 122
Query: 136 VPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGK 175
YGT+ ++ R + FV+ +SP D + ++ELNG ++ K
Sbjct: 123 SGYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNGKKINDK 170
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 86/185 (46%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ + + +F YG + V+ + + FV+ E+ ++ A++ELN
Sbjct: 104 VFVKNLSESTTKDDLVKVFSGYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELN 163
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ +N+K + +AA +G N +++ NL D
Sbjct: 164 GKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQN-----LYLKNLDDGITD 218
Query: 129 PEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180
++RELF +G + C I+R+ GFV + + ++ + E+NG M+ GKP+ V
Sbjct: 219 DQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVA 278
Query: 181 ISTSR 185
+ +
Sbjct: 279 FAQRK 283
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ G + + +R LF +GK+ C ++ K GFV EE A+ E+N
Sbjct: 207 LYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMN 266
Query: 91 GQIVNEKPLKIEAATSRK 108
G++++ KPL + A ++
Sbjct: 267 GKMISGKPLYVAFAQRKE 284
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F ++G ++ C V K Y
Sbjct: 132 CRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQFGNILSCKVAQDELGNSKGY 191
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + +++ + T V++ N+ +
Sbjct: 192 GFVHYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKRDRQSKLEEMKANFTNVYIKNIDE 251
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
+ E +LF PYG VV I R+ +GFV+ S + K ++ELN GK
Sbjct: 252 SVSDEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAAKAVEELNDKEFHGKK 311
Query: 177 MKV 179
+ V
Sbjct: 312 LYV 314
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 81/167 (48%), Gaps = 21/167 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEND 79
P ++ + +++G ++P + ++ LF G+V V ++ Y +V+ N
Sbjct: 53 PSTAAQHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 112
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFV 136
+G A+++LN + +P +I S++ P T VF+ NL + + F
Sbjct: 113 ADGERALEDLNYTSIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFS 170
Query: 137 PYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
+G ++ C + ++ YGFVH ++ + N+ IK +NGM+++ K
Sbjct: 171 QFGNILSCKVAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDK 217
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N++ S E LFE YG+VV + ++ +GFV+ + E A++ELN
Sbjct: 244 VYIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAAKAVEELN 303
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ + K L + EAA K ++V NL+D+ ++RE
Sbjct: 304 DKEFHGKKLYVGRAQKKHEREEELRRQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRE 363
Query: 134 LFVPYGTVVECDIVRN 149
LF YGT+ ++R+
Sbjct: 364 LFSSYGTITSAKVMRD 379
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 90/181 (49%), Gaps = 21/181 (11%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------Y 71
+I S R+ P GT I+I N++ + + F +G ++ C V + Y
Sbjct: 101 RIMYSYRD-PTIRKSGTGNIYIKNLDKAIDNKALHDTFSAFGSILSCKVATDSLGQSLGY 159
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNT 126
GFV +N+E + AI +LNG ++N+K + + ++ + K V+V NLS+ T
Sbjct: 160 GFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFLRKQERESAIDKATFNNVYVKNLSETT 219
Query: 127 RAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMK 178
+++++F YGT+ ++R+ +GFV+ ++P D + ++ LNG D K
Sbjct: 220 TEEDLKKIFGEYGTITSAVVMRDGNGKSRCFGFVNFENPDDAAQSVEALNGKTFDEKEWY 279
Query: 179 V 179
V
Sbjct: 280 V 280
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 92/184 (50%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ E ++ +F +YG + V+++ +GFV+ EN ++ +++ LN
Sbjct: 210 VYVKNLSETTTEEDLKKIFGEYGTITSAVVMRDGNGKSRCFGFVNFENPDDAAQSVEALN 269
Query: 91 GQIVNEKPLKIEAATSR-------KGPNTPTTK----------VFVGNLSDNTRAPEVRE 133
G+ +EK + A + KG T K ++V NL D+ +++E
Sbjct: 270 GKTFDEKEWYVGKAQKKSEREVELKGRFEQTLKETVDKFQGLNLYVKNLDDSITDDKLKE 329
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF +GT+ C ++R+ GFV + + ++ + E+NG MV KP+ V ++ +
Sbjct: 330 LFSEFGTITSCKVMRDPNGVSRGSGFVAFSTAEEASRALTEMNGKMVVSKPLYVALAQRK 389
Query: 186 VRQR 189
+R
Sbjct: 390 EERR 393
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 23/158 (14%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G++ + + LF ++G+VV V ++ YG+V+ N + AI+ L
Sbjct: 31 LYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQAIEVL 90
Query: 90 NGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
N VN KP++I + T RK + T +++ NL + + F +G+++ C
Sbjct: 91 NFTPVNGKPIRIMYSYRDPTIRK---SGTGNIYIKNLDKAIDNKALHDTFSAFGSILSCK 147
Query: 146 IVRN-------YGFVHIDSPDINK-CIKELNGMMVDGK 175
+ + YGFV D+ + K I +LNGM+++ K
Sbjct: 148 VATDSLGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDK 185
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDS-PDINKCIK 165
T ++VG+L N ++ +LF +G VV + R+ YG+V+ ++ D + I+
Sbjct: 29 TSLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQAIE 88
Query: 166 ELNGMMVDGKPMKVQIS 182
LN V+GKP+++ S
Sbjct: 89 VLNFTPVNGKPIRIMYS 105
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G+ IFI N++ + + F +G ++ C V K +GFV + +E
Sbjct: 114 PSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAVDEAGQSKGFGFVQYDKEE 173
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPN-----TPTTKVFVGNLSDNTRAPEVRELF 135
+ AIK LNG ++N+KP+ + ++ + T VFV NLS++T ++ ++F
Sbjct: 174 AAQNAIKSLNGMLINDKPVFVGPFVRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIF 233
Query: 136 VPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
YG + ++ R +GF++ ++PD + ++ELNG ++ K V
Sbjct: 234 GEYGDITSAVVMIGMDGKSRCFGFINFENPDAASHAVQELNGKKINDKEWYV 285
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 21/164 (12%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G++ S + LF + G+VV V ++ Y +V+ N + A+
Sbjct: 33 TTSLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARAL 92
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
+ LN +N KP+++ S + P+ + + +F+ NL + E F +GT++
Sbjct: 93 EVLNFAALNNKPIRV--MYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILS 150
Query: 144 CDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 179
C + + +GFV D + + IK LNGM+++ KP+ V
Sbjct: 151 CKVAVDEAGQSKGFGFVQYDKEEAAQNAIKSLNGMLINDKPVFV 194
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 91/197 (46%), Gaps = 43/197 (21%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ E + +F +YG + V+ + +GF++ EN + A++ELN
Sbjct: 215 VFVKNLSESTTKEDLLKIFGEYGDITSAVVMIGMDGKSRCFGFINFENPDAASHAVQELN 274
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ +N+K + +AA +G N +++ NL D+
Sbjct: 275 GKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLN-----LYLKNLDDSIGD 329
Query: 129 PEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180
++ ELF +G + ++R+ GFV + + ++ + E+NG M+ GKP+ V
Sbjct: 330 DQLCELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVA 389
Query: 181 ISTSRVRQRPGVDEVVI 197
+ R R + +V +
Sbjct: 390 FA-QRKEDRKAMLQVTV 405
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 163
PTT ++VG+L ++ ELF G VV + R+ Y +V+ +P D +
Sbjct: 32 PTTSLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARA 91
Query: 164 IKELNGMMVDGKPMKVQIS 182
++ LN ++ KP++V S
Sbjct: 92 LEVLNFAALNNKPIRVMYS 110
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 20/168 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G+ IFI N++ G + + F +G ++ C V K YGFV +N+E
Sbjct: 104 PSVRKSGSGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEE 163
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
+ AI++LNG ++N+K + + ++ + K V+V NLS+ T ++++ F
Sbjct: 164 SAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAIDKTRFNNVYVKNLSETTTEEDLKKAF 223
Query: 136 VPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 175
YGT+ ++R+ +GFV+ + + D ++ LNG D K
Sbjct: 224 GEYGTITSAVVMRDGDGKTKCFGFVNFENADDAATAVEALNGKKFDDK 271
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 95/189 (50%), Gaps = 42/189 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ E ++ F +YG + V+++ +GFV+ EN ++ TA++ LN
Sbjct: 205 VYVKNLSETTTEEDLKKAFGEYGTITSAVVMRDGDGKTKCFGFVNFENADDAATAVEALN 264
Query: 91 GQIVNEKP---------------LKI-------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ ++K LK+ EAA +G N +++ NL D+
Sbjct: 265 GKKFDDKEWFVGKAQKKNERENELKVRFEQSMKEAADKFQGAN-----LYIKNLDDSIGD 319
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+++LF P+GT+ C ++R+ GFV +P + +K + E+NG MV KP+ V
Sbjct: 320 DRLKQLFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASKALMEMNGKMVVSKPLYVA 379
Query: 181 ISTSRVRQR 189
++ + +R
Sbjct: 380 LAQRKEDRR 388
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 79/164 (48%), Gaps = 21/164 (12%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G++ + + LF + G+VV V ++ YG+V+ + ++ A+
Sbjct: 23 TTSLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQDAARAL 82
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
LN +N P++I S + P+ + + +F+ NL + + F +G ++
Sbjct: 83 DMLNFTPLNGSPIRI--MYSHRDPSVRKSGSGNIFIKNLDKGIDHKALHDTFSAFGNILS 140
Query: 144 CDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
C + + YGFV D+ + K I++LNGM+++ K + V
Sbjct: 141 CKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 109 GPNTP--TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP 158
G N P TT ++VG+L N + +LF G VV + R+ YG+V+ SP
Sbjct: 16 GANAPYVTTSLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSP 75
Query: 159 -DINKCIKELNGMMVDGKPMKVQIS 182
D + + LN ++G P+++ S
Sbjct: 76 QDAARALDMLNFTPLNGSPIRIMYS 100
>gi|363754371|ref|XP_003647401.1| hypothetical protein Ecym_6201 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891038|gb|AET40584.1| hypothetical protein Ecym_6201 [Eremothecium cymbalariae
DBVPG#7215]
Length = 448
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 87/182 (47%), Gaps = 31/182 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G ++ E ++ FE G V+ V+ + YG+V E+ AIKE+
Sbjct: 213 IFVGRLSWSIDDEWLKTEFEHIGGVISARVIYERGTERSRGYGYVDFEDKSYAEKAIKEM 272
Query: 90 NGQIVNEKPLKIEAATSRKG--------------PNTPTTKVFVGNLSDNTRAPEVRELF 135
G+ ++ +P+ ++ +TS+ P+ P+ +F+GNLS N + ELF
Sbjct: 273 QGKEIDGRPINVDMSTSKPASNPKEDRAKKFGDVPSQPSDTLFLGNLSFNADRDNIFELF 332
Query: 136 VPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
YG+++ E + + +G+V S + K + +L G +D +P+++ S+ R
Sbjct: 333 KDYGSIISVRIPTHPETNQPKGFGYVQYASIEEAQKALDKLQGEYIDNRPVRLDFSSPRP 392
Query: 187 RQ 188
Q
Sbjct: 393 PQ 394
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 107 RKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHI-DS 157
+ P P T +FVG LS + ++ F G V+ ++ R YG+V D
Sbjct: 204 KDSPTEPAT-IFVGRLSWSIDDEWLKTEFEHIGGVISARVIYERGTERSRGYGYVDFEDK 262
Query: 158 PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
K IKE+ G +DG+P+ V +STS+ P D
Sbjct: 263 SYAEKAIKEMQGKEIDGRPINVDMSTSKPASNPKEDRA 300
>gi|388854914|emb|CCF51417.1| probable PAB1-mRNA polyadenylate-binding protein [Ustilago hordei]
Length = 648
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
++ NV+P + E LF YGK+ C + K +GFV+ E+ EE + A+ EL+
Sbjct: 227 VYCKNVDPEVTDEQFEKLFTNYGKITSCVLQRDDDGKSKGFGFVNFEDHEEAQKAVDELH 286
Query: 91 -----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E+ L+ EAA + K +++ N+ ++ +RE
Sbjct: 287 DSDFHGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLRE 346
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ C I+ R +GFV P + NK + E+NG M+D +P+ V ++ +
Sbjct: 347 EFAPFGTITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALAQRK 406
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 26/174 (14%)
Query: 21 NISCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN----- 70
N CR M P G IFI N++ G + + F +G ++ C V N
Sbjct: 113 NRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNDTGSL 172
Query: 71 -YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNL 122
YGFVH E E AIK +NG ++N+K + + RK T V+ N+
Sbjct: 173 GYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRAKFTNVYCKNV 232
Query: 123 SDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELN 168
+ +LF YG + C + R+ +GFV+ D + K + EL+
Sbjct: 233 DPEVTDEQFEKLFTNYGKITSCVLQRDDDGKSKGFGFVNFEDHEEAQKAVDELH 286
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C V K YGFV E DE
Sbjct: 122 PSSRKSGAANIFIKNLDKSIDNKALFDTFSAFGTILSCKVATEISGESKGYGFVQYEQDE 181
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGP----NTPT-TKVFVGNLSDNTRAPEVRELF 135
+ AI ELNG ++N+K + + ++ +P V+V NLS++T ++E+F
Sbjct: 182 SAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTEDNLKEMF 241
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
+G + +VR +GFV+ ++P D + +++LNG +D K + V
Sbjct: 242 GKFGPITSVIVVRADDGKSRCFGFVNFENPDDAARAVEDLNGKKLDDKELYV 293
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 89/185 (48%), Gaps = 33/185 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ + ++ +F K+G + VV+ +GFV+ EN ++ A+++LN
Sbjct: 223 VYVKNLSESTTEDNLKEMFGKFGPITSVIVVRADDGKSRCFGFVNFENPDDAARAVEDLN 282
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPE-VR 132
G+ +++K L K E + T +++ NL + E ++
Sbjct: 283 GKKLDDKELYVGRAQKKSEREMQLKEKFEKSNKETADKNQGTNLYLKNLDGSVDDDEKLK 342
Query: 133 ELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTS 184
ELF +GT+ C ++R+ GFV S D ++ + +NG MV KP+ V ++
Sbjct: 343 ELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDASRALVAMNGKMVGSKPLYVALAQR 402
Query: 185 RVRQR 189
+ +R
Sbjct: 403 KEERR 407
Score = 36.2 bits (82), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCIK 165
T ++VG+L + + ++ ++F G+VV + R+ Y +V+ SP D + ++
Sbjct: 42 TSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAME 101
Query: 166 ELNGMMVDGKPMKVQIS 182
LN V+GKP+++ S
Sbjct: 102 MLNFTPVNGKPIRIMYS 118
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G+ I+I N++P + + F +G ++ C V + +
Sbjct: 109 CRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGF 168
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH EN+ + R AI+ ++G ++N++ + + S+K + T V+V N+
Sbjct: 169 GFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQ 228
Query: 125 NTRAPEVRELFVPYG----TVVECDI---VRNYGFVHI-DSPDINKCIKELNGMMVDGKP 176
T E ELF YG V+E D +R +GFV+ D K + ELN + G+
Sbjct: 229 ETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQK 288
Query: 177 MKV 179
+ V
Sbjct: 289 LYV 291
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGK----VVECDV---VKNYGFVHMENDEEGRTAIKELN 90
+++ N++ TS E LF KYGK V+E D ++ +GFV+ E+ A+ ELN
Sbjct: 221 VYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELN 280
Query: 91 -----GQIV------------NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E + EAA K +FV NL D+ +++E
Sbjct: 281 ELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKE 340
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++R+ +GFV +P + K I E N +V GKP+ V I+ +
Sbjct: 341 EFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400
Query: 186 VRQR 189
+R
Sbjct: 401 EVRR 404
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G + P S L+ +F G V V ++ Y +V+ + E G AI++L
Sbjct: 40 LYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQL 99
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P+ + +++ NL + E F +G ++ C +
Sbjct: 100 NYTLIKGKPCRI--MWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKV 157
Query: 147 V-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
R +GFVH ++ D I+ ++GM+++ + + V + S+ ++ ++EV
Sbjct: 158 ATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEV 214
>gi|412985322|emb|CCO20347.1| predicted protein [Bathycoccus prasinos]
Length = 789
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 35/185 (18%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---------KNYGFVHMENDEEGRTAIK 87
K+++ N+ P + E +RP+FEK+G+V CDVV K + FV + E R+AI
Sbjct: 508 KLYVANLPPHVTNEQLRPIFEKFGRVTACDVVPDRDKQLSCKGFAFVTFATEVEARSAIP 567
Query: 88 ELNG----------QIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
NG +I NE + I A T+++ N K++V NL + +++
Sbjct: 568 HTNGMTIEGRVVETRIKNEPKVPIHNASGGDTAQEDVNE-EAKLYVANLPSHYEEEDLKT 626
Query: 134 LFVPYGTVVECDIV--------RNYGFVH-IDSPDINKCIKELNGMMVDG--KPMKVQIS 182
LF PYG V +V + YGFV +D + ++G MV+G KP+ V I+
Sbjct: 627 LFSPYGLVQSVKLVLDHTTGLSKGYGFVQMMDQEQAMSAVVAVHGNMVEGCTKPLVVNIA 686
Query: 183 TSRVR 187
+ R
Sbjct: 687 NDKKR 691
>gi|341893520|gb|EGT49455.1| CBN-TIAR-2 protein [Caenorhabditis brenneri]
Length = 420
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 87/172 (50%), Gaps = 24/172 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+GN++P + E I LF + G V + ++ + Y F+ + + A++ +N
Sbjct: 40 LFVGNLDPAVTDEFIATLFNQMGAVTKAKIIFDFQGLADPYAFIEFSDHNQAAQALQSMN 99
Query: 91 GQIVNEKPLKIEAA--------TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVV 142
G+ + ++ L++ A +SRK + VFVG+LS + +++E F+P+G V
Sbjct: 100 GRQLLDRELRVNWAVEPNQPGDSSRKMDYSRHFHVFVGDLSSEIDSTKLKEAFLPFGEVS 159
Query: 143 ECDIVRN--------YGFV-HIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
E I+R+ YGFV + D + I+++NG + + ++ ++ +
Sbjct: 160 EAKIIRDTTTNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRTNWASRK 211
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 26 NMPGFSSVGT-----FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYG 72
N PG SS F +F+G+++ ++ F +G+V E ++ K YG
Sbjct: 117 NQPGDSSRKMDYSRHFHVFVGDLSSEIDSTKLKEAFLPFGEVSEAKIIRDTTTNKAKGYG 176
Query: 73 FVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FV E+ AI+++NGQ + + ++ A+ +
Sbjct: 177 FVSYPRREDAERAIEQMNGQWLGRRTIRTNWASRK 211
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 21/181 (11%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------Y 71
+I S R+ P G I+I N++ + + F +G ++ C V + Y
Sbjct: 101 RIMYSYRD-PTIRKSGAGNIYIKNLDKAIDNKALHDTFSAFGNILSCKVATDSAGQSLGY 159
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNT 126
GFV +N+E + AI +LNG ++N+K + + R+ + T K V+V NLS+ T
Sbjct: 160 GFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFLRRQERESGTDKTKFNNVYVKNLSETT 219
Query: 127 RAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMK 178
+++++F YG + ++R+ +GFV+ ++P D + ++ LNG D K
Sbjct: 220 TEEDLKKIFGEYGAITSAVVMRDGDGKSRCFGFVNFENPDDAARSVEALNGKTFDEKEWY 279
Query: 179 V 179
V
Sbjct: 280 V 280
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 93/184 (50%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ E ++ +F +YG + V+++ +GFV+ EN ++ +++ LN
Sbjct: 210 VYVKNLSETTTEEDLKKIFGEYGAITSAVVMRDGDGKSRCFGFVNFENPDDAARSVEALN 269
Query: 91 GQIVNEKPLKIEAATSR-------KGPNTPTTK----------VFVGNLSDNTRAPEVRE 133
G+ +EK + A + KG T K ++V NL D+ +++E
Sbjct: 270 GKTFDEKEWYVGKAQKKSEREVELKGQFEQTLKETVDKFEGLNLYVKNLDDSITDDKLKE 329
Query: 134 LFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
LF +GT+ C ++R+ GFV + + + +K + E+NG M+ KP+ V ++ +
Sbjct: 330 LFSEFGTITSCKVMRDPNGVSKGSGFVAYSTAEEASKALTEMNGKMIVSKPLYVALAQRK 389
Query: 186 VRQR 189
+R
Sbjct: 390 EERR 393
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 23/178 (12%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G++ + + LF + G++V V ++ YG+V+ N + A++ L
Sbjct: 31 LYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQALEVL 90
Query: 90 NGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
N VN KP++I + T RK + +++ NL + + F +G ++ C
Sbjct: 91 NFTPVNGKPIRIMYSYRDPTIRK---SGAGNIYIKNLDKAIDNKALHDTFSAFGNILSCK 147
Query: 146 IVRN-------YGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
+ + YGFV D+ + K I +LNGM+++ K + V R + G D+
Sbjct: 148 VATDSAGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFLRRQERESGTDKT 205
Score = 36.2 bits (82), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDS-PDINKCI 164
+T ++VG+L N ++ +LF G +V + R+ YG+V+ ++ D + +
Sbjct: 28 STSLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQAL 87
Query: 165 KELNGMMVDGKPMKVQIS 182
+ LN V+GKP+++ S
Sbjct: 88 EVLNFTPVNGKPIRIMYS 105
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 24/179 (13%)
Query: 23 SCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KN 70
+CR M P G +FI N++ G + + F +G ++ C VV K
Sbjct: 80 ACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKG 139
Query: 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT----TKVFVGNLSDNT 126
+GFVH E E AI ++NG ++N + + + S K PT T VF NLS++
Sbjct: 140 FGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDV 199
Query: 127 RAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINKCIKE-LNGMMVDGKPM 177
+++EL YG + I+ + +GF + +S + K + E NG + GKP+
Sbjct: 200 GPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPI 258
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 87/176 (49%), Gaps = 30/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F N++ + ++ L ++YG++ ++ K +GF + E+ E + ++ N
Sbjct: 190 VFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENEN 249
Query: 91 GQIVNEKPL-------KIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELFVPY 138
G+I + KP+ KIE K +T TK +++ N+ D+ ++RE+F +
Sbjct: 250 GKIFHGKPIYAGRAQKKIEREAELK--HTFETKYQGVNLYIKNIDDSIDNDKLREVFSQF 307
Query: 139 GTVVECDIVRN--------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
GT+ ++++ +GFV +PD + + E+NG M+ KP+ V ++ +
Sbjct: 308 GTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRK 363
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 83/173 (47%), Gaps = 22/173 (12%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G++ P S + + +F + G V V ++ Y +V+ N + A+ L
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTL 71
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N + K +I S++ P+ + VF+ NL + + F +G ++ C +
Sbjct: 72 NNTPIRGKACRI--MWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKV 129
Query: 147 V-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV-QISTSRVRQRP 190
V + +GFVH ++ + +K I ++NGMM++G+ + V +S+ R +P
Sbjct: 130 VTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQP 182
>gi|341903554|gb|EGT59489.1| CBN-TIAR-3 protein [Caenorhabditis brenneri]
Length = 417
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 34/184 (18%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
F +F+G+++ S +L++ F+KYG+V E V+ K YGFV N + AI
Sbjct: 192 FHVFVGDLSKDVSNDLLKSTFQKYGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAENAIA 251
Query: 88 ELNGQIVNEKPLKIEAAT------------------SRKGPNTPTTKVFVGNLSDNTRAP 129
+NG+ + ++ ++ A S K N T V+VGN+S T
Sbjct: 252 GMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADN---TSVYVGNISQQTTDA 308
Query: 130 EVRELFVPYGTVVECDIVRN--YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
++R+ F YG + E + + Y FV D + K I E+NG + G +V+ S R
Sbjct: 309 DLRDSFSTYGDIAEVRVFKTQRYAFVRYDKKECATKAIMEMNGKEMAGN--QVRCSWGRT 366
Query: 187 RQRP 190
+ P
Sbjct: 367 QAVP 370
>gi|385281386|gb|AFI57844.1| polyA binding protein, partial [Cocos nucifera]
Length = 352
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 42/189 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ + + +F +YG + V++ +GFV+ E+ E A+KELN
Sbjct: 49 VFVKNLSESTTEDNLLEIFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELN 108
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ + K + EAA +G N +++ NL D+
Sbjct: 109 GKKFDGKEWYVGKAQKKSEREMELKGRFEQRMQEAADKNQGAN-----LYLKNLDDSIGD 163
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
++RELF +G++ C ++R+ GFV SP D +K + E+NG M+ KP+ V
Sbjct: 164 DKLRELFSEFGSITSCKVMRDPNGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVA 223
Query: 181 ISTSRVRQR 189
++ + +R
Sbjct: 224 LAQRKEDRR 232
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 74 VHMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRA 128
++++ +E AI++LNG ++N+K P + +T VFV NLS++T
Sbjct: 1 IYVDPEEAAHNAIEKLNGMLLNDKKVFVGPFLRKQDRENTANSTKFNNVFVKNLSESTTE 60
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
+ E+F YG + ++R +GFV+ + P+ K +KELNG DGK V
Sbjct: 61 DNLLEIFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGKEWYV 119
>gi|347967649|ref|XP_312633.5| AGAP002335-PA [Anopheles gambiae str. PEST]
gi|333468363|gb|EAA07505.5| AGAP002335-PA [Anopheles gambiae str. PEST]
Length = 458
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 21/182 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ + EL+ LF + G V C +++ + F+ N + +TA+ +N +
Sbjct: 10 LYVGNLDTSVTEELLCTLFSQMGTVKSCKIIRETSIDPFAFIEYANHQSAQTALAAMNKR 69
Query: 93 IVNEKPLKIEAATSRKG-PNTPTTK---VFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+ +K +++ ATS P T T++ +FVG+LS +RE F P+G + C IVR
Sbjct: 70 MFLKKEIRVNWATSAGNQPKTDTSQHHHIFVGDLSPEIDTETLREAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQ 199
+ Y FV + + I +NG + + ++ ST R+ P E G
Sbjct: 130 DPQTLKSRGYAFVSFVKKAEAENAIAMMNGQWLGSRSIRTNWST---RKPPAPRENSKGI 186
Query: 200 KS 201
KS
Sbjct: 187 KS 188
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 37/192 (19%)
Query: 23 SCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFV 74
S N P + IF+G+++P E +R F +G++ C +V++ Y FV
Sbjct: 83 SAGNQPKTDTSQHHHIFVGDLSPEIDTETLREAFAPFGEISNCRIVRDPQTLKSRGYAFV 142
Query: 75 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP-----------------------N 111
E AI +NGQ + + ++ +T RK P
Sbjct: 143 SFVKKAEAENAIAMMNGQWLGSRSIRTNWST-RKPPAPRENSKGIKSGKTPGFEEIYNNT 201
Query: 112 TPT-TKVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNG 169
+PT T V+ G N E +++ F +G + + + ++ G+ I + + G
Sbjct: 202 SPTNTTVYCGGFPPNAITDELIQKHFAQFGHINDTRVFKDKGYAFIRFASKESAARAIEG 261
Query: 170 MM---VDGKPMK 178
V G P+K
Sbjct: 262 THNSEVQGHPVK 273
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
+++ N+N T+ E LF KYG V+ + +K +GFV E E+ A++ELN
Sbjct: 218 VYVKNINLETTDEEFNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEELN 277
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G ++ L + EA+ K +FV NL D+ +++E
Sbjct: 278 GTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEKLKE 337
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F PYGT+ ++R +GFV +P + K I E N +V GKP+ V I+ +
Sbjct: 338 EFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 397
Query: 186 VRQR 189
+R
Sbjct: 398 DVRR 401
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 27/173 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G+ IFI N++P + + F +G ++ + K +
Sbjct: 106 CRIMWSQRDPALRKKGSGNIFIKNLHPDIDNKALFETFSVFGNILSSKIATDETGKSKGF 165
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E++ + AI LNG ++N + + + +RK ++ T V+V N++
Sbjct: 166 GFVHFEHESSAKEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNINL 225
Query: 125 NTRAPEVRELFVPYGTVVECDI-------VRNYGFVHID-SPDINKCIKELNG 169
T E ELF YG V+ + ++ +GFV + D K ++ELNG
Sbjct: 226 ETTDEEFNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEELNG 278
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 126 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGSSKGY 185
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE + AIK +NG ++NEK + + +K + T V+V N+S
Sbjct: 186 GFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISP 245
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E RELF +G V I R +GFV+ + + K ++ELN + G+
Sbjct: 246 EVTDDEFRELFERHGDVTSSSIAREQDGKSRGFGFVNFTTHEAAAKAVEELNNKDLHGQE 305
Query: 177 MKV 179
+ V
Sbjct: 306 LYV 308
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 24/135 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++P + + R LFE++G V + + +GFV+ E A++ELN
Sbjct: 238 VYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFGFVNFTTHEAAAKAVEELN 297
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ ++ + L + EAA K +++ NL D+ ++R
Sbjct: 298 NKDLHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDDKLRI 357
Query: 134 LFVPYGTVVECDIVR 148
+F +G + ++R
Sbjct: 358 MFAEFGPITSAKVMR 372
Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDS-PDINKCI 164
+ ++VG L + + ELF G V + R+ Y +V+ +S PD K +
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 165 KELNGMMVDGKPMKVQIS 182
+ELN ++ G+P ++ S
Sbjct: 114 EELNYTLIKGRPCRIMWS 131
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N++ + + F +G ++ C VV K YGFVH E +E
Sbjct: 91 PGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDERGSKGYGFVHFETEEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+ +NG ++N++ + + SRK T +++ N ++ +++E+
Sbjct: 151 ANRAIETMNGMLLNDRKVFVGHFKSRKEREEELGSKALKFTNIYIKNFGEDYNDEKLKEV 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ R +GFV+ D K + E+NG ++GK + V + R+
Sbjct: 211 FAAFGRTLSVRVMKDERGRSRGFGFVNFAHHEDAQKAVDEMNGKELNGKVIYVGRAQKRL 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I+I N + E ++ +F +G+ + V+K+ +GFV+ + E+ + A+ E+N
Sbjct: 193 IYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKDERGRSRGFGFVNFAHHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A R + ++V NL D+ +R+
Sbjct: 253 GKELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDSIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F PYGT+ ++ R +GFV SP + K + E+NG +V KP+ V ++ R
Sbjct: 313 EFAPYGTITSAKVMTDGPQSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRR 371
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F YG + V+ + +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGPQSRGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV KPL + A R+ T ++ L+
Sbjct: 356 RIVATKPLYVALAQRREERKAILTNKYMQRLA 387
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N + E +R +FEKYGK+ ++ K +GFV E+ E TA++ LN
Sbjct: 194 VYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFVAFESPEAAETAVEALN 253
Query: 91 G-QIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G +I++ KPL + EA + ++V NL D +R
Sbjct: 254 GKEIIDGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDERLR 313
Query: 133 ELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+ F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 314 KEFSPFGTITSAKVMMEDNRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 373
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 91 PSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDENGTSKGYGFVHFETEE 150
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I+++NG ++N K + + RK T V+V N ++ ++R
Sbjct: 151 AANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDLTEEQLRT 210
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGM-MVDGKPMKV 179
+F YG + I+ + +GFV +SP+ + ++ LNG ++DGKP+ V
Sbjct: 211 MFEKYGKITSYKIMSKDDGKSKGFGFVAFESPEAAETAVEALNGKEIIDGKPLYV 265
Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 298 LYVKNLDDTIDDERLRKEFSPFGTITSAKVMMEDNRSKGFGFVCFSSPEEATKAVTEMNG 357
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVP 137
+IV KPL + A ++ T ++ ++ N R ++ + P
Sbjct: 358 RIVGSKPLYVALAQRKEDRKAHLTSQYMQRMA-NIRMHQMGQFIQP 402
>gi|170055835|ref|XP_001863758.1| nucleolysin tia-1 [Culex quinquefasciatus]
gi|167875726|gb|EDS39109.1| nucleolysin tia-1 [Culex quinquefasciatus]
Length = 456
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 89/182 (48%), Gaps = 21/182 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ + +L+ LF + G V C +++ Y F+ + + +TA+ +N +
Sbjct: 10 LYVGNLDQSVTEDLLCALFGQMGAVKSCKIIREASSDPYAFIEYASHQSAQTALAAMNKR 69
Query: 93 IVNEKPLKIEAATSRKG-PNTPTTK---VFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+ +K +K+ ATS P T T++ +FVG+LS +RE F P+G + C IVR
Sbjct: 70 LFLKKEIKVNWATSPGNQPKTDTSQHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQ 199
+ Y FV + + I+ +NG + + ++ ST R+ P E G
Sbjct: 130 DPQTLKSKGYAFVSFVKKAEAENAIQMMNGQWLGSRSIRTNWST---RKPPAPRENTKGI 186
Query: 200 KS 201
KS
Sbjct: 187 KS 188
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 37/189 (19%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + IF+G+++P E +R F +G++ C +V K Y FV
Sbjct: 86 NQPKTDTSQHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP----NT-------------------PT 114
E AI+ +NGQ + + ++ +T RK P NT PT
Sbjct: 146 KKAEAENAIQMMNGQWLGSRSIRTNWST-RKPPAPRENTKGIKSGKTPGFEEIYNNTGPT 204
Query: 115 -TKVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMM- 171
T V+ G NT + ++ F +G++ + + ++ G+ I + + G
Sbjct: 205 NTTVYCGGFPPNTISDNLIKTHFGQFGSIHDVRVFKDKGYAFIKFISKEAAARAIEGTHN 264
Query: 172 --VDGKPMK 178
V G P+K
Sbjct: 265 SEVQGHPVK 273
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 20/166 (12%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAI 86
G+ IFI N++ + + F +G ++ C V K +GFV E +E + AI
Sbjct: 126 GSANIFIKNLDKMIDNKSLHETFSSFGTILSCKVAMDEGGQSKGFGFVQYEKEEAAQNAI 185
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN-----TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
K LNG ++N+KP+ + ++ + T VFV NLS++T ++ ++F YG +
Sbjct: 186 KSLNGMLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGNI 245
Query: 142 VECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
++ R +GF++ ++PD ++ ++ELNG ++ K V
Sbjct: 246 TSAVVMIGMDGKSRCFGFINFENPDAASRAVQELNGKKINDKEWYV 291
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 88/185 (47%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ E + +F +YG + V+ + +GF++ EN + A++ELN
Sbjct: 221 VFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELN 280
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ +N+K + +AA +G N +++ NL D+
Sbjct: 281 GKKINDKEWYVGRAQKKSEREMELKRRFEQILKDAADKYQGLN-----LYLKNLDDSIGD 335
Query: 129 PEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180
++RELF +G + C ++R+ GFV + + ++ + E+NG M+ GKP+ V
Sbjct: 336 DQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVA 395
Query: 181 ISTSR 185
+ +
Sbjct: 396 FAQRK 400
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G++ S + LF + G+VV V ++ Y +V+ N + A+
Sbjct: 39 TTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARAL 98
Query: 87 KELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
+ LN +N KP+++ + ++ R G + +F+ NL + E F +GT+
Sbjct: 99 EVLNFAPLNNKPIRVMYSNRDPSSRRSG----SANIFIKNLDKMIDNKSLHETFSSFGTI 154
Query: 142 VECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 179
+ C + + +GFV + + + IK LNGM+++ KP+ V
Sbjct: 155 LSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFV 200
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKE 88
+++ N++ + +R LF +GK+ C V+ K GFV EE A+ E
Sbjct: 322 LNLYLKNLDDSIGDDQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAFSTREEASQALTE 381
Query: 89 LNGQIVNEKPLKIEAATSRK 108
+NG++++ KPL + A ++
Sbjct: 382 MNGKMISGKPLYVAFAQRKE 401
Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 163
PTT ++VG+L + ++ ELF G VV + R+ Y +V+ ++P D +
Sbjct: 38 PTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARA 97
Query: 164 IKELNGMMVDGKPMKVQIS 182
++ LN ++ KP++V S
Sbjct: 98 LEVLNFAPLNNKPIRVMYS 116
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 130 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGY 189
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE + AIK +NG ++NEK + + +K + T ++V N++
Sbjct: 190 GFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNVNP 249
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E RELF YG + + R+ +GFV+ + + K + ELNG G+
Sbjct: 250 EASDDEFRELFERYGEITSSSLARDQDGKSRGFGFVNYTTHESAYKAVDELNGKDFKGQD 309
Query: 177 MKV 179
+ V
Sbjct: 310 LYV 312
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 83/218 (38%), Gaps = 70/218 (32%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ NVNP S + R LFE+YG++ + ++ +GFV+ E A+ ELN
Sbjct: 242 IYVKNVNPEASDDEFRELFERYGEITSSSLARDQDGKSRGFGFVNYTTHESAYKAVDELN 301
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K +++ NL D+ ++R
Sbjct: 302 GKDFKGQDLYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDEKLRH 361
Query: 134 LFVPYGTVVECDIVRN-------------------------------------------- 149
+F +G + ++R+
Sbjct: 362 MFSEFGPITSAKVMRDAPSDGSDEEKEDEQEAEPKKEGNVVEADEEGSEKKGDKKFGKSK 421
Query: 150 -YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+GFV +P D K + E++ M++GKP+ V ++ +
Sbjct: 422 GFGFVCFSNPDDATKAVAEMSQRMINGKPLYVALAQRK 459
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 28/187 (14%)
Query: 21 NISCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------- 68
N CR M P G IFI N++ + + F +G ++ C V
Sbjct: 127 NRPCRIMWSQRDPALRKTGQGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNS 186
Query: 69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGN 121
K YGFVH E DE + AIK +NG ++NEK + + +K + T +++ N
Sbjct: 187 KGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANYTNIYIKN 246
Query: 122 LSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPD-INKCIKELNGMMV 172
L + E R+LF YG V I R+ +GF++ + + K ++ELN +
Sbjct: 247 LHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEELNSREI 306
Query: 173 DGKPMKV 179
G+ + V
Sbjct: 307 HGQELYV 313
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 25/136 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
I+I N++ + + R LFE+YG V + ++ +GF++ E A++EL
Sbjct: 242 IYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEEL 301
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N + ++ + L + EAA K +++ NL D ++R
Sbjct: 302 NSREIHGQELYVGRAQKKHEREEELRKSYEAARQEKASKYVGVNLYIKNLDDEVDDEKLR 361
Query: 133 ELFVPYGTVVECDIVR 148
ELF PYG + ++R
Sbjct: 362 ELFAPYGPITSAKVMR 377
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PALRKSGVGNIFIKNIDDSIDNKALYDTFSAFGNILSCKVVCDERGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNT-------PTTKVFVGNLSDNTRAPEVREL 134
AI+ +NG ++N++ + + SRK T +++ N DN +++E
Sbjct: 151 ANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGTKVMKFTNIYIKNFGDNLTDEKLKEA 210
Query: 135 FVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D K + E+NG ++GK + V + R+
Sbjct: 211 FSAFGKTLSVRVMRDEKGRSRGFGFVNYAHHEDAQKAVDEMNGKEMNGKIIYVGRAQKRL 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I+I N + E ++ F +GK + V+++ +GFV+ + E+ + A+ E+N
Sbjct: 193 IYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFVNYAHHEDAQKAVDEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K L+ + RK ++ +V NL D+ +R+
Sbjct: 253 GKEMNGKIIYVGRAQKRLERQGELKRKFDQLKQDRIQRYQGVNLYVKNLDDSIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F PYGT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ R
Sbjct: 313 EFSPYGTITSAKVMTEAGQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRR 371
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F YG + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDSIDDERLRKEFSPYGTITSAKVMTEAGQSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A R+
Sbjct: 356 RIVATKPLYVALAQRRE 372
>gi|365760560|gb|EHN02272.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 371
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G ++ E ++ FE G V+ V+ + YG+V EN AI+E+
Sbjct: 143 IFVGRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVDFENKSYAEKAIQEM 202
Query: 90 NGQIVNEKPLKIEAATSRKG--------------PNTPTTKVFVGNLSDNTRAPEVRELF 135
G+ ++ +P+ + +TS+ P+ P+ +F+GNLS N + ELF
Sbjct: 203 QGKEIDGRPINCDLSTSKPAGNNTNDRAKKFGDTPSEPSDTLFLGNLSFNADRDTIFELF 262
Query: 136 VPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
+G VV E + + +G+V S D K ++ L G +D +P+++ S+ R
Sbjct: 263 AKHGEVVSVRIPTHPETEQPKGFGYVQFSSLEDSKKALESLQGEYIDNRPVRLDYSSPR 321
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 10 VKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVV------ 63
+ S+ + N N + S + +F+GN++ + I LF K+G+VV
Sbjct: 216 LSTSKPAGNNTNDRAKKFGDTPSEPSDTLFLGNLSFNADRDTIFELFAKHGEVVSVRIPT 275
Query: 64 --ECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
E + K +G+V + E+ + A++ L G+ ++ +P++++ ++ R
Sbjct: 276 HPETEQPKGFGYVQFSSLEDSKKALESLQGEYIDNRPVRLDYSSPR 321
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 20/162 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P GT IFI N++ + + F +G ++ C V K YGFV E DE
Sbjct: 205 PSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDE 264
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKG-PNTPTT----KVFVGNLSDNTRAPEVRELF 135
AI++LNG ++N+K + + ++ N+P + V+V NL++ T +++E+F
Sbjct: 265 AAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 324
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNG 169
+GT+ ++R+ +GFV+ +SPD +++LNG
Sbjct: 325 GKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNG 366
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 34/211 (16%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMEN 78
N PG SV +++ N+ T+ + ++ +F K+G + V+++ +GFV+ E+
Sbjct: 296 NSPG--SVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFES 353
Query: 79 DEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGN 121
+E A+++LNG+ ++K K E T +++ N
Sbjct: 354 PDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKN 413
Query: 122 LSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVD 173
L D ++RELF +GT+ C ++R+ GFV S D ++ + E+N MV
Sbjct: 414 LDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVG 473
Query: 174 GKPMKVQISTSRVRQRPGVDEVVIGQKSVPV 204
KP+ V ++ + ++ + + VP+
Sbjct: 474 NKPLYVALAQRKEDRKARLQAQFSQMRPVPM 504
>gi|366987527|ref|XP_003673530.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
gi|342299393|emb|CCC67147.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
Length = 415
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 30/178 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G ++ E ++ FE G VV V+ + YG+V E+ AIKE+
Sbjct: 164 IFVGRLSWSIDDEWLKKEFEHIGGVVSARVIMERGTDRSRGYGYVDFEDKSYAEKAIKEM 223
Query: 90 NGQIVNEKPLKIEAATSRKG-------------PNTPTTKVFVGNLSDNTRAPEVRELFV 136
G+ ++ + + ++ +TS+ P+ P+ +F+GNLS N + ELF
Sbjct: 224 QGKEIDGREINVDMSTSKPAAGNNDRAKKFGDVPSEPSETLFLGNLSFNADRDAISELFS 283
Query: 137 PYGTVV--------ECDIVRNYGFV-HIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
YG ++ E + + +G+V + + D K ++ L G +D +P+++ ST R
Sbjct: 284 KYGEIISVRIPTHPETEQPKGFGYVQYTNVEDAKKALEGLQGEYIDNRPVRLDYSTPR 341
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDEKGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+ +NG ++N++ + + SRK T V++ N ++ +++E+
Sbjct: 151 ANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGSKAMKFTNVYIKNFGEDFTDEKLKEV 210
Query: 135 FVPYGTVVECDIV-------RNYGFV-HIDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ R +GFV + D K + E+NG ++GK + V + R+
Sbjct: 211 FSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVNEMNGKEINGKILYVGRAQKRL 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N + E ++ +F +G+ + V+K+ +GFV+ + E+ + A+ E+N
Sbjct: 193 VYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVNEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K L+ + RK ++ +V NL D+ +R+
Sbjct: 253 GKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F PYGT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ R
Sbjct: 313 EFAPYGTITSAKVMTDGSQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRR 371
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F YG + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGSQSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV KPL + A R+ T ++ L+
Sbjct: 356 RIVATKPLYVALAQRREERKAILTNKYMQRLA 387
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 18/178 (10%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P GT IFI N++ + + F +G ++ C V K Y
Sbjct: 76 RIMFSHRD-PSIRKSGTANIFIKNLDRAIDNKALHDTFVSFGNILSCKVATDSNGQSKGY 134
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR--KGPNTPTTKVFVGNLSDNTRAP 129
GFV E +E + AI ++NG +V EK + + R + N VFV NL ++T
Sbjct: 135 GFVQFEQEESAQVAIDKVNGMLVAEKQVFVGPFVRRQEREQNGKFNNVFVKNLGESTTDD 194
Query: 130 EVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
E++E+F +G + ++R+ +GFV+ ++PD K + LNG ++ K V
Sbjct: 195 ELKEVFGAFGKITSAVVMRDSDGKSKCFGFVNFENPDEAAKAVVGLNGKKIEDKEWYV 252
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 85/184 (46%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N+ T+ + ++ +F +GK+ V+++ +GFV+ EN +E A+ LN
Sbjct: 182 VFVKNLGESTTDDELKEVFGAFGKITSAVVMRDSDGKSKCFGFVNFENPDEAAKAVVGLN 241
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + +K K E + +++ NL D+ +RE
Sbjct: 242 GKKIEDKEWYVGRAQKKSEREAELRAKYEQERKERIDRYQGANLYLKNLDDDVDDERLRE 301
Query: 134 LFVPYGTVVECDIVRNY-------GFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+F +G++ C ++R+ GFV +P + N+ E+NG M+ KP+ V ++ +
Sbjct: 302 IFADFGSITSCKVMRDAQGQSKGSGFVAYSAPEEANRATIEMNGKMIGSKPIYVAMAQRK 361
Query: 186 VRQR 189
+R
Sbjct: 362 EERR 365
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++P S + LF + G+V+ V ++ Y +V+ N ++ A++ L
Sbjct: 6 LYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRALELL 65
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N VN K ++I S + P+ + T +F+ NL + + FV +G ++ C +
Sbjct: 66 NFTPVNGKAVRI--MFSHRDPSIRKSGTANIFIKNLDRAIDNKALHDTFVSFGNILSCKV 123
Query: 147 V-------RNYGFVHIDSPDINK-CIKELNGMMVDGK 175
+ YGFV + + + I ++NGM+V K
Sbjct: 124 ATDSNGQSKGYGFVQFEQEESAQVAIDKVNGMLVAEK 160
>gi|194910009|ref|XP_001982056.1| GG12380 [Drosophila erecta]
gi|190656694|gb|EDV53926.1| GG12380 [Drosophila erecta]
Length = 464
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 22/169 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S +L+ LF G V C +++ Y F+ N + TA+ +N +
Sbjct: 9 LYVGNLDSSVSEDLLIALFGTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKR 68
Query: 93 IVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ +K +K+ ATS N P T +FVG+LS +RE F P+G + C I
Sbjct: 69 LFLDKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRI 126
Query: 147 VRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
VR+ Y FV + + I+ +NG + + ++ ST ++
Sbjct: 127 VRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKL 175
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G+++P E +R F +G++ C +V K Y FV E AI+ +
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAM 156
Query: 90 NGQIVNEKPLKIEAATSRKGP 110
NGQ + + ++ +T + P
Sbjct: 157 NGQWIGSRSIRTNWSTRKLPP 177
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 135 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGY 194
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T V+V N++
Sbjct: 195 GFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNINH 254
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKP 176
E RELF YG V + R+ +GFV+ + K ++ELNG G+
Sbjct: 255 EVTEEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVNFTTHASAAKAVEELNGKEFRGQE 314
Query: 177 MKV 179
+ V
Sbjct: 315 LYV 317
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/223 (20%), Positives = 83/223 (37%), Gaps = 75/223 (33%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+N + E R LF KYG+V + ++ +GFV+ A++ELN
Sbjct: 247 VYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVNFTTHASAAKAVEELN 306
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K +++ NL+D+ ++R+
Sbjct: 307 GKEFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDVDDDKLRQ 366
Query: 134 LFVPYGTVVECDIVRN-------------------------------------------- 149
+F +G + ++R+
Sbjct: 367 MFSEFGPITSAKVMRDAPPEPPAGSEGDKEGKDKENKKESEKEGEGEAAEKKTEKKVERK 426
Query: 150 ------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+GFV +P D K + E+N MVDGKP+ V ++ +
Sbjct: 427 LGKSKGFGFVCFSNPDDATKAVAEMNQRMVDGKPLYVALAQRK 469
>gi|195504962|ref|XP_002099304.1| GE10834 [Drosophila yakuba]
gi|194185405|gb|EDW99016.1| GE10834 [Drosophila yakuba]
Length = 464
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 22/169 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S +L+ LF G V C +++ Y F+ N + TA+ +N +
Sbjct: 9 LYVGNLDSSVSEDLLIALFGTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKR 68
Query: 93 IVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ +K +K+ ATS N P T +FVG+LS +RE F P+G + C I
Sbjct: 69 LFLDKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRI 126
Query: 147 VRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
VR+ Y FV + + I+ +NG + + ++ ST ++
Sbjct: 127 VRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKL 175
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G+++P E +R F +G++ C +V K Y FV E AI+ +
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAM 156
Query: 90 NGQIVNEKPLKIEAATSRKGP 110
NGQ + + ++ +T + P
Sbjct: 157 NGQWIGSRSIRTNWSTRKLPP 177
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D +++E+
Sbjct: 151 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDEMEDEQLKEM 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 175
F YG + ++ R +GFV + D NK ++E+NG ++GK
Sbjct: 211 FEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVEEINGTELNGK 259
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ +FEKYGK + V+ + +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVEEIN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G +N +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + + G +++P A+
Sbjct: 373 ERKAHLTNQYMQRIAGMRAMPPNAI 397
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 132 CRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGY 191
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T V+V N++
Sbjct: 192 GFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINS 251
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E R+LF YG V + R+ +GFV+ + + ++ ++ELNG G+
Sbjct: 252 EASDDEFRDLFTKYGEVTSSSLARDQEGKSRGFGFVNFTTHEAASQAVEELNGKDFRGQD 311
Query: 177 MKV 179
+ V
Sbjct: 312 LYV 314
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G + P + ++ LF G V V ++ Y +V+ +G A++EL
Sbjct: 63 LYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEEL 122
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++N +P +I S++ P VF+ NL + + F +G ++ C +
Sbjct: 123 NYTVINGRPCRI--MWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 180
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
++ YGFVH ++ + + IK +NGM+++ K + V
Sbjct: 181 AQDEHGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYV 221
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+N S + R LF KYG+V + ++ +GFV+ E A++ELN
Sbjct: 244 VYVKNINSEASDDEFRDLFTKYGEVTSSSLARDQEGKSRGFGFVNFTTHEAASQAVEELN 303
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K +++ NLSD+ ++R
Sbjct: 304 GKDFRGQDLYVGRAQKKHEREEELRKSYEAARQEKANKYQGVNLYIKNLSDDVDDEKLRA 363
Query: 134 LFVPYGTVVECDIVRN 149
+F +G + ++R+
Sbjct: 364 MFSEFGPITSAKVMRD 379
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI ++NG ++N++ + + SRK T V++ N D+ ++E+
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEM 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F YG + ++ + +GFV + D K + E+NG ++GK M V + +V
Sbjct: 211 FGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + E ++ +F KYG + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N K + K+E T RK ++ +V NL D +R+
Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F+P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 EFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 23/187 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P GT IFI N++ + + F +G ++ C + K YGFV +N+E
Sbjct: 115 PSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDNEE 174
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
+ AI +LNG ++N+K + + ++ +K V+V NLS++T E+ F
Sbjct: 175 AAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMINF 234
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPM---KVQISTS 184
YGT+ I+R+ +GFV+ ++P D K ++ LNG D K K Q +
Sbjct: 235 GEYGTITSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGKAQKKSE 294
Query: 185 RVRQRPG 191
R ++ G
Sbjct: 295 REQELKG 301
Score = 65.9 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 41/184 (22%), Positives = 86/184 (46%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ E + F +YG + ++++ +GFV+ EN ++ A++ LN
Sbjct: 216 VYVKNLSESTTDEELMINFGEYGTITSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLN 275
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++K + E + P +++ NL D +++E
Sbjct: 276 GKKFDDKEWYVGKAQKKSEREQELKGRFEQSIKEAADKYPGLNLYLKNLDDTISDEKLKE 335
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+F YGT+ C ++R+ GFV +P + + + E+NG M GKP+ V ++ +
Sbjct: 336 MFADYGTITSCKVMRDPTGISRGSGFVAFSTPEEATRALGEMNGKMFAGKPLYVALAQRK 395
Query: 186 VRQR 189
+R
Sbjct: 396 EERR 399
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 21/164 (12%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G+++ + + LF + G+VV V ++ YG+V+ N ++ A+
Sbjct: 34 TTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARAL 93
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
LN +N + ++I S + P+ + T +F+ NL + + F +G ++
Sbjct: 94 DVLNFTPLNNRSIRI--MYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILS 151
Query: 144 CDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
C I + YGFV D+ + I +LNGM+++ K + V
Sbjct: 152 CKIATDASGLSKGYGFVQFDNEEAAQNAIDKLNGMLINDKQVYV 195
>gi|401842356|gb|EJT44580.1| NSR1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 393
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G ++ E ++ FE G V+ V+ + YG+V EN AI+E+
Sbjct: 143 IFVGRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVDFENKSYAEKAIQEM 202
Query: 90 NGQIVNEKPLKIEAATSRKG--------------PNTPTTKVFVGNLSDNTRAPEVRELF 135
G+ ++ +P+ + +TS+ P+ P+ +F+GNLS N + ELF
Sbjct: 203 QGKEIDGRPINCDLSTSKPAGNNTNDRAKKFGDTPSEPSDTLFLGNLSFNADRDTIFELF 262
Query: 136 VPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
+G VV E + + +G+V S D K ++ L G +D +P+++ S+ R
Sbjct: 263 AKHGEVVSVRIPTHPETEQPKGFGYVQFSSLEDSKKALESLQGEYIDNRPVRLDYSSPR 321
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 10 VKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVV------ 63
+ S+ + N N + S + +F+GN++ + I LF K+G+VV
Sbjct: 216 LSTSKPAGNNTNDRAKKFGDTPSEPSDTLFLGNLSFNADRDTIFELFAKHGEVVSVRIPT 275
Query: 64 --ECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
E + K +G+V + E+ + A++ L G+ ++ +P++++ ++ R
Sbjct: 276 HPETEQPKGFGYVQFSSLEDSKKALESLQGEYIDNRPVRLDYSSPR 321
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI ++NG ++N++ + + SRK T V++ N D+ ++E+
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEM 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F YG + ++ + +GFV + D K + E+NG ++GK M V + +V
Sbjct: 211 FGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + E ++ +F KYG + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N K + K+E T RK ++ +V NL D +R+
Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F+P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 EFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|390359470|ref|XP_782936.3| PREDICTED: nucleolysin TIAR-like [Strongylocentrotus purpuratus]
Length = 430
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 19/172 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYG--KVVECDVVKNYG------FVHMENDEEGRTAIKEL 89
+++GN++ + EL+ LF + K C ++ ++G FV + A+ +
Sbjct: 27 LYVGNLDRRVTEELVFQLFLQIAPSKTKSCKMIADHGNSDPYCFVEFYDSVTAEAAMVAM 86
Query: 90 NGQIVNEKPLKIEAATSR--KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 147
NG+ V +KP+K+ AT++ + T VFVG+L + E+R LF YG++ + +V
Sbjct: 87 NGRTVFDKPIKVNWATTQGSRKDTTHHHHVFVGDLVQEMKTAELRALFDKYGSITDARVV 146
Query: 148 RN--------YGFVHIDSPDINKC-IKELNGMMVDGKPMKVQISTSRVRQRP 190
R+ YGFV + + +C IKE+NG ++ P I T ++P
Sbjct: 147 RDPETGKSRCYGFVSFEQEEDAQCAIKEMNGAILPQYPGMKAIRTGWATRKP 198
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 38/177 (21%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+F+G++ +R LF+KYG + + VV++ YGFV E +E+ + AIKE+
Sbjct: 116 VFVGDLVQEMKTAELRALFDKYGSITDARVVRDPETGKSRCYGFVSFEQEEDAQCAIKEM 175
Query: 90 NGQIV-------------------NEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDN 125
NG I+ + KP +IEA + PN T V+VG L
Sbjct: 176 NGAILPQYPGMKAIRTGWATRKPTSHKPPQIEAKDYERVLNETSPNNCT--VYVGGLQFK 233
Query: 126 TRAPE-VRELFVPYGTVVECDIV--RNYGFVHI-DSPDINKCIKELNGMMVDGKPMK 178
A + +R++F P+G + E + + FV + I ++G ++G +K
Sbjct: 234 FSAEDLLRKVFGPFGAIQEVRTFPEKAFAFVRFANHESATNAIVSVHGSPIEGHVVK 290
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C V K YGFV +N+E
Sbjct: 108 PSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEE 167
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
+ AI++LNG ++N+K + + ++ + K VFV NLS++T E++ +F
Sbjct: 168 SAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTADKAKFNNVFVKNLSESTTDDELKNVF 227
Query: 136 VPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
+GT+ ++R+ +GFV+ + + D + ++ LNG D K V
Sbjct: 228 GEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYV 279
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 94/189 (49%), Gaps = 42/189 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ + ++ +F ++G + V+++ +GFV+ EN ++ A++ LN
Sbjct: 209 VFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALN 268
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ ++K + EAA +G N ++V NL D+
Sbjct: 269 GKKFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGAN-----LYVKNLDDSLGD 323
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQ 180
+++ELF P+GT+ C ++R+ GFV +PD ++ + E+NG MV KP+ V
Sbjct: 324 DKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALLEMNGKMVVSKPLYVT 383
Query: 181 ISTSRVRQR 189
++ + +R
Sbjct: 384 LAQRKEDRR 392
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 79/160 (49%), Gaps = 21/160 (13%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G+++P + + LF + G+VV V ++ YG+V+ N ++ A+
Sbjct: 27 TTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARAL 86
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVE 143
LN +N +P++I S + P+ + +F+ NL + + F +G ++
Sbjct: 87 DVLNFTPLNNRPIRI--MYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILS 144
Query: 144 CDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
C + + YGFV D+ + K I++LNGM+++ K
Sbjct: 145 CKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 184
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 89/184 (48%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ + ++ F +YG + V+++ +GFV+ EN E+ A++ LN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++K + E +S G ++V NL D ++RE
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF +GT+ C ++R+ GFV + + ++ + E+NG MV GKP+ V ++ +
Sbjct: 347 LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Query: 186 VRQR 189
+R
Sbjct: 407 EERR 410
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 20/166 (12%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAI 86
G +F+ N++ + + F G +V C V + YGFV + ++ + AI
Sbjct: 132 GVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAI 191
Query: 87 KELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
++LNG+++N+K P + T V+V NLS+ T E++ F YG++
Sbjct: 192 EKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSI 251
Query: 142 VECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
++R+ +GFV+ ++P D + ++ LNG D K V
Sbjct: 252 SSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYV 297
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 17/155 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++ + + F + +VV V ++ YG+V+ N ++ A+++L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 90 NGQIVNEKPLKIE-AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
N +N K ++I ++ + +FV NL + + E F GT+V C +
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVAT 167
Query: 148 ------RNYGFVHIDSPDINK-CIKELNGMMVDGK 175
R YGFV D+ D K I++LNG +++ K
Sbjct: 168 DHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDK 202
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 27/184 (14%)
Query: 23 SCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KN 70
+CR M P G IFI N++ G + + F +G V+ C V K
Sbjct: 118 ACRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFAAFGNVLSCKVATDEHGRSKG 177
Query: 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLS 123
YGFVH E E TAIK +NG ++N+K + + SRK + T V+V N+
Sbjct: 178 YGFVHYETAEAADTAIKAVNGMLLNDKKVYVGPHISRKERQSKIEEMKAQFTNVYVKNID 237
Query: 124 DNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 175
E R+LF +G V I R+ +GFV+ + + K ++ L+ ++GK
Sbjct: 238 AEVTDEEFRQLFEQFGNVTSAVIQRDEEGRSKGFGFVNFEKHEEAQKGVESLHDFELNGK 297
Query: 176 PMKV 179
+ V
Sbjct: 298 KLFV 301
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
+++ N++ + E R LFE++G V + K +GFV+ E EE + ++ L+
Sbjct: 231 VYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEEGRSKGFGFVNFEKHEEAQKGVESLH 290
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+N K L + E A + K +++ NL D +R+
Sbjct: 291 DFELNGKKLFVTRAQKKAEREEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDDERLRQ 350
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++R+ +GFV SPD K + E+N M+ KP+ V ++ R
Sbjct: 351 EFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRR 410
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R ++ + + + +Q
Sbjct: 411 EVRRQQLESQIAQRNQIRMQ 430
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG ++GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEINGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.9 bits (102), Expect = 0.041, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P +GT +FI N++P + + F +GK++ C V K Y
Sbjct: 137 CRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGY 196
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH ++ E AI+ +NG ++N+K + + SR+ + T V++ NL
Sbjct: 197 GFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDT 256
Query: 125 NTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKP 176
E +LF +G + +V R +GFV+ + + K + ELN GK
Sbjct: 257 EITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKK 316
Query: 177 MKV 179
+ V
Sbjct: 317 LYV 319
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 91/194 (46%), Gaps = 21/194 (10%)
Query: 21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YG 72
N S P ++ + +++G ++P + ++ LF G V V ++ Y
Sbjct: 51 NASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYA 110
Query: 73 FVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAP 129
+V+ N E+G A+ ELN ++ +P +I S++ P+ T VF+ NL
Sbjct: 111 YVNFHNMEDGEKALDELNYTLIKGRPCRI--MWSQRDPSLRKMGTGNVFIKNLDPAIDNK 168
Query: 130 EVRELFVPYGTVVECDI-------VRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQI 181
+ + F +G ++ C + + YGFVH DS + N I+ +NGM+++ K + V
Sbjct: 169 ALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH 228
Query: 182 STSRVRQRPGVDEV 195
SR ++ V+ +
Sbjct: 229 HVSRRERQSKVEAL 242
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 42/205 (20%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N++ + + LF ++G++ +VK+ +GFV+ N E + A+ ELN
Sbjct: 249 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 308
Query: 91 GQIVNEKPL----------------------KIEAATSRKGPNTPTTKVFVGNLSDNTRA 128
+ K L K+E +G N +F+ NL D
Sbjct: 309 DKEYKGKKLYVGRAQKKHEREEELRKAYEQMKLEKMNKYQGVN-----LFIKNLQDEVDD 363
Query: 129 PEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
++ F +GT+ I+ + +GFV +P + NK + E+N M+ GKP+ V
Sbjct: 364 ERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 423
Query: 181 ISTSRVRQRPGVDEVVIGQKSVPVQ 205
++ + +R ++ + + +Q
Sbjct: 424 LAQRKEVRRSQLEAQIQARNQFRLQ 448
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 89/184 (48%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ + ++ F +YG + V+++ +GFV+ EN E+ A++ LN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++K + E +S G ++V NL D ++RE
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF +GT+ C ++R+ GFV + + ++ + E+NG MV GKP+ V ++ +
Sbjct: 347 LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Query: 186 VRQR 189
+R
Sbjct: 407 EERR 410
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 20/166 (12%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAI 86
G +F+ N++ + + F G +V C V + YGFV + ++ + AI
Sbjct: 132 GVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAI 191
Query: 87 KELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
++LNG+++N+K P + T V+V NLS+ T E++ F YG++
Sbjct: 192 EKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSI 251
Query: 142 VECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
++R+ +GFV+ ++P D + ++ LNG D K V
Sbjct: 252 SSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYV 297
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 17/155 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++ + + F + +VV V ++ YG+V+ N ++ A+++L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 90 NGQIVNEKPLKIE-AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
N +N K ++I ++ + +FV NL + + E F GT+V C +
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVAT 167
Query: 148 ------RNYGFVHIDSPDINK-CIKELNGMMVDGK 175
R YGFV D+ D K I++LNG +++ K
Sbjct: 168 DHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDK 202
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C V K YGFV + DE
Sbjct: 119 PSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDE 178
Query: 81 EGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
+ AI +LNG ++N+K P + G T V+V NLS++ E+ ++F
Sbjct: 179 AAQRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVF 238
Query: 136 VPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 175
+G C I+R+ +GFV+ + S D + + LNG D K
Sbjct: 239 GEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDK 286
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 85/180 (47%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ S E + +F ++G C ++ K +GFV+ EN ++ A+ LN
Sbjct: 220 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 279
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++K K E + + + ++V NL ++ ++RE
Sbjct: 280 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLRE 339
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ C ++R+ GFV +P + ++ I E+NG M+ KP+ V ++ +
Sbjct: 340 HFAPFGTITSCKVMRDPTGVSRGSGFVAFSTPEEASRAITEMNGKMIVTKPLYVALAQRK 399
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 87/181 (48%), Gaps = 21/181 (11%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTA 85
GT +++G+++ + + F + G+VV V ++ YG+V+ ++ A
Sbjct: 37 GTTSLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 96
Query: 86 IKELNGQIVNEKPLKIEAATSRKGPNTPTTKV---FVGNLSDNTRAPEVRELFVPYGTVV 142
+ ELN +N + +++ S + P+ + V F+ NL + + E F +G ++
Sbjct: 97 LNELNFMALNGRAIRV--MYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPIL 154
Query: 143 ECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
C + + YGFV D+ + + I +LNGM+++ K + V ++++ P ++
Sbjct: 155 SCKVAVDPSGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEK 214
Query: 195 V 195
V
Sbjct: 215 V 215
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ + + +R F +G + C V+++ GFV EE AI E+N
Sbjct: 323 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPTGVSRGSGFVAFSTPEEASRAITEMN 382
Query: 91 GQIVNEKPLKIEAATSRK 108
G+++ KPL + A ++
Sbjct: 383 GKMIVTKPLYVALAQRKE 400
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E +
Sbjct: 92 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 151
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D+ ++EL
Sbjct: 152 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKEL 211
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 175
F YG + ++ R +GFV + D NK ++E+NG ++GK
Sbjct: 212 FDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGK 260
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + ++ LF+KYGK + V+ + +GFV E E+ A++E+N
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMN 253
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G +N +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 254 GTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 313
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 314 EFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 373
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + + G +++P A+
Sbjct: 374 ERKAHLTNQYMQRIAGMRAMPANAI 398
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C V K YGFV + DE
Sbjct: 125 PSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDE 184
Query: 81 EGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
+ AI +LNG ++N+K P + G T V+V NLS++ E+ ++F
Sbjct: 185 AAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVF 244
Query: 136 VPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 175
+G C I+R+ +GFV+ + S D + + LNG D K
Sbjct: 245 GEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDK 292
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 84/180 (46%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ S E + +F ++G C ++ K +GFV+ EN ++ A+ LN
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++K K E + + + ++V NL ++ ++RE
Sbjct: 286 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLRE 345
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ C ++R+ GFV +P + + I E+NG M+ KP+ V ++ +
Sbjct: 346 HFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRK 405
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 87/181 (48%), Gaps = 21/181 (11%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTA 85
GT +++G+++ + + F + G+VV V ++ YG+V+ ++ A
Sbjct: 43 GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 86 IKELNGQIVNEKPLKIEAATSRKGPNTPTTKV---FVGNLSDNTRAPEVRELFVPYGTVV 142
+ ELN +N + +++ S + P+ + V F+ NL + + E F +G ++
Sbjct: 103 LNELNFMALNGRAIRV--MYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPIL 160
Query: 143 ECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
C + + YGFV D+ + + I +LNGM+++ K + V ++++ P ++
Sbjct: 161 SCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEK 220
Query: 195 V 195
V
Sbjct: 221 V 221
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ + + +R F +G + C V+++ GFV EE AI E+N
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 91 GQIVNEKPLKIEAATSRK 108
G+++ KPL + A ++
Sbjct: 389 GKMIVTKPLYVALAQRKE 406
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 22/189 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI ++ + + F +G + C +V + YGFVH E DE
Sbjct: 90 PSLRKSGVGNVFIKKLDKSIDNKALYDTFSAFGNISSCKIVCDEHGSRGYGFVHFETDEA 149
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGP-------NTPTTKVFVGNLSDNTRAPEVREL 134
R AI+++NG ++N K + + SR+ V+V NLS+ T ++RE+
Sbjct: 150 ARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLDLGMRKFNNVYVKNLSEETDDEKLREI 209
Query: 135 FVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F YG ++ ++ + +GFV ++P+ K ++ LNG GK + V + ++
Sbjct: 210 FELYGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKKAVEALNGNDNAGKILYVGRAQTK 269
Query: 186 VRQRPGVDE 194
+ ++ + E
Sbjct: 270 IERQAELKE 278
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 32/177 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+++ N++ T E +R +FE YGK++ V+ K +GFV EN E + A++ L
Sbjct: 192 VYVKNLSEETDDEKLREIFELYGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKKAVEAL 251
Query: 90 NGQ-------IVNEKPLKIEAATSRKGPNTPTTK----------VFVGNLSDNTRAPEVR 132
NG V KIE K K +FV NL DN +R
Sbjct: 252 NGNDNAGKILYVGRAQTKIERQAELKEKFERIRKERINRYQGVNLFVKNLDDNIDDKRLR 311
Query: 133 ELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
+ F +GT+ ++ + +GFV+ SP + K I E+N +++ +P+ V ++
Sbjct: 312 KEFAQFGTITSAKVMTENGRSKGFGFVYFSSPEEATKAIVEMNEKIIEARPLYVALA 368
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+F+ N++ + +R F ++G + V+ K +GFV+ + EE AI E+N
Sbjct: 296 LFVKNLDDNIDDKRLRKEFAQFGTITSAKVMTENGRSKGFGFVYFSSPEEATKAIVEMNE 355
Query: 92 QIVNEKPLKIEAATSRK 108
+I+ +PL + A ++
Sbjct: 356 KIIEARPLYVALAQRKE 372
>gi|391330636|ref|XP_003739762.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 364
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 85/169 (50%), Gaps = 21/169 (12%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ G + +L+ LF + G++ C ++ Y FV N + +AI +N +
Sbjct: 15 LYVGNLDSGVTEDLVCALFSQMGQIKGCKIIHEPGSDPYCFVEFVNHSDASSAITAMNAR 74
Query: 93 IVNEKPLKIEAATS---RKGPNTPTT----KVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
+ + L++ A+S ++ P+ P T +FVG+LS ++RE F P+G + +C
Sbjct: 75 MCLGRELRVNWASSAIQQQTPHRPDTSKHHHIFVGDLSPQIETSDLREAFSPFGEISDCR 134
Query: 146 IVRN--------YGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+V++ YGFV + D I ++G + + ++ ++ +
Sbjct: 135 VVKDATTQKSKGYGFVSFTNKQDAENAIHTMDGSWLGSRAIRTNWASRK 183
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
IF+G+++P +R F +G++ +C VVK+ YGFV N ++ AI
Sbjct: 105 HIFVGDLSPQIETSDLREAFSPFGEISDCRVVKDATTQKSKGYGFVSFTNKQDAENAIHT 164
Query: 89 LNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFV---PYGTVVEC 144
++G + + ++ A SRK PN T ++G + RA E+F P V C
Sbjct: 165 MDGSWLGSRAIRTNWA-SRK-PNHKETGSYIGG---HHRALNYDEVFAQSSPSNCTVYC 218
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 73.6 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + +REL
Sbjct: 151 ANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLREL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E +R LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 33/195 (16%)
Query: 18 NQINIS------CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECD 66
+Q+N S CR M PG G IFI N++ G + + F +G V+ C
Sbjct: 133 DQLNYSQIRGKPCRIMWSQRDPGLRKTGQGNIFIKNLDQGIDNKALHDTFAAFGTVLSCK 192
Query: 67 VV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT----- 114
V K YGFVH +++E AIK +NG ++N+K + + SRK +
Sbjct: 193 VATDDSGLSKGYGFVHYDSNEAAEAAIKAVNGMLLNDKKVFVGQHISRKERQSKIDEMKS 252
Query: 115 --TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCI 164
T ++V NL E LF +G + I ++ +GFV+ ++ D + +
Sbjct: 253 HFTNLYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGNSKGFGFVNFENHEDAQRAV 312
Query: 165 KELNGMMVDGKPMKV 179
+EL+ + GKP+ V
Sbjct: 313 EELDNKEIHGKPVFV 327
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 85/180 (47%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ E LF ++G + + K+ +GFV+ EN E+ + A++EL+
Sbjct: 257 LYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGNSKGFGFVNFENHEDAQRAVEELD 316
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ ++ KP+ + E A K + +++ NL D+ ++R
Sbjct: 317 NKEIHGKPVFVGRAQKKSEREEELRKQYEQAKYEKAGKYQGSNLYIKNLEDDVDDEKLRA 376
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ C ++R+ +GFV SPD + + E+N +V KP+ V ++ +
Sbjct: 377 EFEPFGTITSCKVMRDEKGTSKGFGFVCFSSPDEATRAMSEMNNKIVGTKPLYVALAQRK 436
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 84/177 (47%), Gaps = 21/177 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ +F G V V ++ Y +V+ N +G A+ +L
Sbjct: 76 LYVGELDPQVTEAMLFEIFNMIGPVASVRVCRDAVTRRSLGYAYVNYLNYNDGERALDQL 135
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N + KP +I S++ P T +F+ NL + + F +GTV+ C +
Sbjct: 136 NYSQIRGKPCRI--MWSQRDPGLRKTGQGNIFIKNLDQGIDNKALHDTFAAFGTVLSCKV 193
Query: 147 V-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
+ YGFVH DS + + IK +NGM+++ K + V SR ++ +DE+
Sbjct: 194 ATDDSGLSKGYGFVHYDSNEAAEAAIKAVNGMLLNDKKVFVGQHISRKERQSKIDEM 250
>gi|253181|gb|AAB22809.1| NSR1=nucleolin homolog [Saccharomyces cerevisiae, Peptide, 249 aa]
Length = 249
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 29/177 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G ++ E ++ FE G V+ V+ + YG+V EN AI+E+
Sbjct: 5 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 64
Query: 90 NGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAPEVRELFVP 137
G+ ++ +P+ + +TS+ P+ P+ +F+GNLS N + ELF
Sbjct: 65 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAK 124
Query: 138 YGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
+G VV E + + +G+V + D K + L G +D +P+++ S+ R
Sbjct: 125 HGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 181
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 73.6 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + +REL
Sbjct: 151 ANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLREL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E +R LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 73.6 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + +REL
Sbjct: 151 ANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLREL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E +R LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.074, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + +REL
Sbjct: 151 ANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLREL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E +R LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 21/181 (11%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P GT IFI N++ + + F +G ++ C V K Y
Sbjct: 96 RIMFSHRD-PSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGNILSCKVATDASGQSKGY 154
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNT 126
GFV E +E + AI+++NG ++N+K P + G + V+V NL+D T
Sbjct: 155 GFVQFEQEESAQNAIEKVNGMLLNDKQVFVGPFVRRQERDQAGGVSKFNNVYVKNLADVT 214
Query: 127 RAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMK 178
E++++F +G + ++R+ +GFV+ + P D K ++ L G D K
Sbjct: 215 TDDELKKVFGAWGPISSAVVMRDNDGKSKCFGFVNFEHPDDAAKAVEALQGKKFDEKEWY 274
Query: 179 V 179
V
Sbjct: 275 V 275
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ T+ + ++ +F +G + V+++ +GFV+ E+ ++ A++ L
Sbjct: 205 VYVKNLADVTTDDELKKVFGAWGPISSAVVMRDNDGKSKCFGFVNFEHPDDAAKAVEALQ 264
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ +EK K E + +++ NL D ++RE
Sbjct: 265 GKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDEKIRE 324
Query: 134 LFVPYGTVVECDIVRNY-------GFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
LF YGT+ C ++R++ GFV SPD + + E+NG MV KP+ V ++ +
Sbjct: 325 LFAEYGTITSCKVMRDHQGQSKGSGFVAFSSPDEATRAVTEMNGKMVGNKPLYVALAQRK 384
Query: 186 VRQR 189
+R
Sbjct: 385 EERR 388
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G++ P S + +F + G+VV V ++ Y +V+ N ++ A++ L
Sbjct: 26 LYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNNAQDATRALELL 85
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N VN KP++I S + P+ + T +F+ NL + + + F +G ++ C +
Sbjct: 86 NFTGVNGKPIRI--MFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGNILSCKV 143
Query: 147 V-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
+ YGFV + + I+++NGM+++ K
Sbjct: 144 ATDASGQSKGYGFVQFEQEESAQNAIEKVNGMLLNDK 180
Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHI-DSPDINKCI 164
+T ++VG+L N ++ E+F G VV + R+ Y +V+ ++ D + +
Sbjct: 23 STSLYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNNAQDATRAL 82
Query: 165 KELNGMMVDGKPMKVQIS 182
+ LN V+GKP+++ S
Sbjct: 83 ELLNFTGVNGKPIRIMFS 100
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 93/179 (51%), Gaps = 19/179 (10%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVEC-------DVVKNY 71
+I S R+ P G+ +F+ N++ + + LF YGK++ C +V K +
Sbjct: 87 RIMFSYRD-PSIRKSGSGNLFVKNLDKSIDNKALHDLFSPYGKILSCKIALDVSNVSKGH 145
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK---VFVGNLSDNTRA 128
GFV + ++ TAI+++NG +++K L + R+ + P +K VFV NLS+ T
Sbjct: 146 GFVQFDTEDAAHTAIEKINGTTLHDKQLFVGPFVRRQERDPPASKFNNVFVKNLSEITTD 205
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
++++LF +G + +++ +GFV+ ++P D K +++L+G K + V
Sbjct: 206 EDLQKLFGVFGPISSAVVMKEVDGKSKCFGFVNFENPEDAVKAVEDLHGTTFQDKELYV 264
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 88/182 (48%), Gaps = 21/182 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEND 79
P S + +++G+++P + I +F++ G V+ + ++ Y +V+ N
Sbjct: 7 PPRSPFASTALYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAYVNYNNT 66
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFV 136
++ AI+ELN VN KP++I S + P+ + + +FV NL + + +LF
Sbjct: 67 QDASRAIEELNFMPVNGKPVRI--MFSYRDPSIRKSGSGNLFVKNLDKSIDNKALHDLFS 124
Query: 137 PYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQ 188
PYG ++ C I + +GFV D+ D + I+++NG + K + V R +
Sbjct: 125 PYGKILSCKIALDVSNVSKGHGFVQFDTEDAAHTAIEKINGTTLHDKQLFVGPFVRRQER 184
Query: 189 RP 190
P
Sbjct: 185 DP 186
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 86/187 (45%), Gaps = 39/187 (20%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ E ++ LF +G + V+K +GFV+ EN E+ A+++L+
Sbjct: 194 VFVKNLSEITTDEDLQKLFGVFGPISSAVVMKEVDGKSKCFGFVNFENPEDAVKAVEDLH 253
Query: 91 GQIVNEKPLKIEAA--------------------TSRKGPNTPTTKVFVGNLSDNTRAPE 130
G +K L + A T K P T +++ NL D +
Sbjct: 254 GTTFQDKELYVSRAQKKNEREAELKAKFEHERKDTEDKSP----TNLYLKNLDDGIDDEK 309
Query: 131 VRELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKPMKVQIS 182
++++F +G V C ++R+ GFV + D + + ++NG M+ KP+ V ++
Sbjct: 310 LKDMFSAFGNVTSCKVMRDPLGHSKGSGFVAFSTSDAALRAVAQMNGKMIGSKPLYVAMA 369
Query: 183 TSRVRQR 189
+ ++
Sbjct: 370 QKKEERK 376
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 32/177 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ S E +R F ++G V C ++K+ +GFV E+ E +A++ L+
Sbjct: 212 VYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGFVCFESPEGAASAVENLD 271
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G +EK K EA + +++ NL + T ++RE
Sbjct: 272 GYTEDEKTWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEEGTDDEKLRE 331
Query: 134 LFVPYGTVVECDIVRNY-------GFVHIDSPD-INKCIKELNGMMVDGKPMKVQIS 182
LF +GT+ C ++R+ FV SPD + + E+NG MV KP+ V ++
Sbjct: 332 LFNEFGTITSCRVMRDASGASRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALA 388
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 21/172 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F ++G + V K YGFV E E
Sbjct: 112 PAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAKVAMDSAGNSKGYGFVQFETAE 171
Query: 81 EGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
+ AI +NG +N+K P + A S +G V+V NLS+N ++RE F
Sbjct: 172 AAQAAIDNVNGMELNDKQVYVGPFQRRADRSTQG-EAKFNNVYVKNLSENLSDEKLREKF 230
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
+G V C I+++ +GFV +SP+ ++ L+G D K V
Sbjct: 231 AEHGAVTSCVIMKDEEGKSKGFGFVCFESPEGAASAVENLDGYTEDEKTWVV 282
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 25/166 (15%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G++ + + F G VV V ++ Y +V+ ++ + AI
Sbjct: 31 TSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAI 90
Query: 87 KELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
LN Q++N KP+++ + A R G +F+ NL + + F +GT+
Sbjct: 91 DVLNFQVINGKPIRVLYSQRDPAVRRSG----VGNIFIKNLDKAIDNKALLDTFAQFGTI 146
Query: 142 VECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 179
+ + YGFV ++ + + I +NGM ++ K + V
Sbjct: 147 TSAKVAMDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYV 192
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 132 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGY 191
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T ++V N++
Sbjct: 192 GFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINP 251
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDS-PDINKCIKELNGMMVDGK 175
E R LF YG V + R+ +GFV+ S D +K ++ELN G+
Sbjct: 252 EVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQ 311
Query: 176 PMKV 179
+ V
Sbjct: 312 NLYV 315
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 25/137 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
I++ N+NP + + R LFEKYG V + ++ +GFV+ + E+ A++EL
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQEL 303
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N + + + L + EAA K +++ NL D ++R
Sbjct: 304 NEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLR 363
Query: 133 ELFVPYGTVVECDIVRN 149
+LF +G + ++R+
Sbjct: 364 QLFSEFGPITSAKVMRD 380
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 185 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGY 244
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T V+V N+
Sbjct: 245 GFVHYETDEAAANAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIPA 304
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E RELF YG V + R+ +GFV+ + + +K ++ELNG G+
Sbjct: 305 EVTDEEFRELFAKYGDVTSSSLARSDEGKSRGFGFVNFTTHEAASKAVEELNGKDFRGQE 364
Query: 177 MKV 179
+ V
Sbjct: 365 LYV 367
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/218 (20%), Positives = 80/218 (36%), Gaps = 70/218 (32%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ + E R LF KYG V + ++ +GFV+ E A++ELN
Sbjct: 297 VYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEGKSRGFGFVNFTTHEAASKAVEELN 356
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K +++ NL D+ ++R+
Sbjct: 357 GKDFRGQELYVGRAQKKHEREEELRRSYEAARQEKANKYQGVNLYIKNLGDDVDDDKLRQ 416
Query: 134 LFVPYGTVVECDIVRN-------------------------------------------- 149
+F YG + ++R+
Sbjct: 417 MFSEYGPITSAKVMRDSVVESAAEDEKDKENKKEDEEEKEGETAEKKAETKEKRKLGKSK 476
Query: 150 -YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+GFV +P D K + E+N M+D KP+ V ++ +
Sbjct: 477 GFGFVCFSNPDDATKAVTEMNQRMIDNKPLYVALAQRK 514
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N++ + + F +G ++ C V K Y
Sbjct: 131 CRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGY 190
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T V+V N+++
Sbjct: 191 GFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINN 250
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E RELF +G V + R+ +GFV+ + + + + ELNG G+
Sbjct: 251 EVTDEEFRELFAKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAQAVDELNGKDFRGQD 310
Query: 177 MKV 179
+ V
Sbjct: 311 LYV 313
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 46/220 (20%), Positives = 81/220 (36%), Gaps = 72/220 (32%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+N + E R LF K+G+V + ++ +GFV+ E A+ ELN
Sbjct: 243 VYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAQAVDELN 302
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K +++ NL D+ ++R
Sbjct: 303 GKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRA 362
Query: 134 LFVPYGTVVECDIVRN-------------------------------------------- 149
+F YG + ++R+
Sbjct: 363 MFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGEAEEEQKEGSEKKTEKKGDRKLGK 422
Query: 150 ---YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+GFV +P D K + E+N MVDGKP+ V ++ +
Sbjct: 423 SKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRK 462
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F+ +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FIQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.077, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|349578366|dbj|GAA23532.1| K7_Nsr1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 416
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 29/177 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G ++ E ++ FE G V+ V+ + YG+V EN AI+E+
Sbjct: 172 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 231
Query: 90 NGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAPEVRELFVP 137
G+ ++ +P+ + +TS+ P+ P+ +F+GNLS N + ELF
Sbjct: 232 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAK 291
Query: 138 YGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
+G VV E + + +G+V + D K + L G +D +P+++ S+ R
Sbjct: 292 HGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 348
>gi|6321599|ref|NP_011675.1| Nsr1p [Saccharomyces cerevisiae S288c]
gi|128576|sp|P27476.1|NSR1_YEAST RecName: Full=Nuclear localization sequence-binding protein;
AltName: Full=p67
gi|4058|emb|CAA40472.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae]
gi|1045265|emb|CAA59817.1| NSR1 [Saccharomyces cerevisiae]
gi|1323271|emb|CAA97173.1| NSR1 [Saccharomyces cerevisiae]
gi|285812350|tpg|DAA08250.1| TPA: Nsr1p [Saccharomyces cerevisiae S288c]
gi|392299413|gb|EIW10507.1| Nsr1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 414
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 29/177 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G ++ E ++ FE G V+ V+ + YG+V EN AI+E+
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 90 NGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAPEVRELFVP 137
G+ ++ +P+ + +TS+ P+ P+ +F+GNLS N + ELF
Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAK 289
Query: 138 YGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
+G VV E + + +G+V + D K + L G +D +P+++ S+ R
Sbjct: 290 HGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 346
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N++ + + F +G ++ C V K Y
Sbjct: 131 CRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGY 190
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T V+V N+++
Sbjct: 191 GFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINN 250
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E RELF +G V + R+ +GFV+ + + + + ELNG G+
Sbjct: 251 EVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQD 310
Query: 177 MKV 179
+ V
Sbjct: 311 LYV 313
Score = 52.8 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 46/221 (20%), Positives = 81/221 (36%), Gaps = 73/221 (33%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+N + E R LF K+G+V + ++ +GFV+ E A+ ELN
Sbjct: 243 VYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELN 302
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K +++ NL D+ ++R
Sbjct: 303 GKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRA 362
Query: 134 LFVPYGTVVECDIVRN-------------------------------------------- 149
+F YG + ++R+
Sbjct: 363 MFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRKLG 422
Query: 150 ----YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+GFV +P D K + E+N MVDGKP+ V ++ +
Sbjct: 423 KSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRK 463
>gi|259146662|emb|CAY79919.1| Nsr1p [Saccharomyces cerevisiae EC1118]
Length = 414
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 29/177 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G ++ E ++ FE G V+ V+ + YG+V EN AI+E+
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 90 NGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAPEVRELFVP 137
G+ ++ +P+ + +TS+ P+ P+ +F+GNLS N + ELF
Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAK 289
Query: 138 YGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
+G VV E + + +G+V + D K + L G +D +P+++ S+ R
Sbjct: 290 HGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 346
>gi|190406825|gb|EDV10092.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae RM11-1a]
gi|207345058|gb|EDZ72003.1| YGR159Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272028|gb|EEU07041.1| Nsr1p [Saccharomyces cerevisiae JAY291]
gi|323354844|gb|EGA86677.1| Nsr1p [Saccharomyces cerevisiae VL3]
gi|365765431|gb|EHN06939.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 416
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 29/177 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G ++ E ++ FE G V+ V+ + YG+V EN AI+E+
Sbjct: 172 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 231
Query: 90 NGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAPEVRELFVP 137
G+ ++ +P+ + +TS+ P+ P+ +F+GNLS N + ELF
Sbjct: 232 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAK 291
Query: 138 YGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
+G VV E + + +G+V + D K + L G +D +P+++ S+ R
Sbjct: 292 HGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 348
>gi|151943436|gb|EDN61747.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae YJM789]
Length = 418
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 29/177 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G ++ E ++ FE G V+ V+ + YG+V EN AI+E+
Sbjct: 174 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 233
Query: 90 NGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAPEVRELFVP 137
G+ ++ +P+ + +TS+ P+ P+ +F+GNLS N + ELF
Sbjct: 234 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAK 293
Query: 138 YGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
+G VV E + + +G+V + D K + L G +D +P+++ S+ R
Sbjct: 294 HGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 350
>gi|156358574|ref|XP_001624592.1| predicted protein [Nematostella vectensis]
gi|156211382|gb|EDO32492.1| predicted protein [Nematostella vectensis]
Length = 235
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 19/166 (11%)
Query: 39 FIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEEGRTAIKELNGQ 92
++GN++P + ELI +F K KVV C ++ + Y FV E + + A ++ +
Sbjct: 1 YVGNLDPKCTQELICSIFNKIAKVVRCKMINSVSYKGPYCFVEFETHADAQEAKFRMDQR 60
Query: 93 IVNEKPLKIEAATS----RKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
V +K LK+ AT+ ++G +FVG+L++N +R+ F P+G + E +V+
Sbjct: 61 TVMDKKLKVNWATNHPGMKRGDTNNHFHIFVGDLAENVDNALLRKTFEPFGEISEVRVVK 120
Query: 149 N--------YGFV-HIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+ +GFV + D K I E++ + + GK +K + +
Sbjct: 121 DPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARK 166
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 31/161 (19%)
Query: 26 NMPGFSSVGT---FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFV 74
N PG T F IF+G++ L+R FE +G++ E VVK+ +GFV
Sbjct: 74 NHPGMKRGDTNNHFHIFVGDLAENVDNALLRKTFEPFGEISEVRVVKDPAKNKSKGFGFV 133
Query: 75 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP--------------------T 114
E+ AI E++ + K +K A + P
Sbjct: 134 SFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNNPTQSKYVCVKNLLWDDVFHQSSQLN 193
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI 155
T V+VGNL + + E++++F YG+++E + + G+ I
Sbjct: 194 TTVYVGNLPPDVKDYELQQMFSQYGSILETKVFADKGYAFI 234
>gi|304798|gb|AAA28828.1| polyadenylate-binding protein [Drosophila melanogaster]
gi|304800|gb|AAA02941.1| polyadenylate-binding protein [Drosophila melanogaster]
Length = 465
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 22/169 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S +L+ LF G V C +++ Y F+ N + TA+ +N +
Sbjct: 9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKR 68
Query: 93 IVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ EK +K+ ATS N P T +FVG+LS +RE F P+G + C I
Sbjct: 69 LFLEKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRI 126
Query: 147 VRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
VR+ Y FV + + I+ +N + + ++ ST ++
Sbjct: 127 VRDPHTMKSKGYAFVSFVKKAEAENAIQAMNRQWIASRSIRTNWSTRKL 175
Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G+++P E +R F +G++ C +V K Y FV E AI+ +
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAM 156
Query: 90 NGQIVNEKPLKIEAATSRKGP 110
N Q + + ++ +T + P
Sbjct: 157 NRQWIASRSIRTNWSTRKLPP 177
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 131 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGY 190
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T V+V N+S
Sbjct: 191 GFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISP 250
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
+ R+LF YG V + R+ +GFV+ + + K + ELNG G+
Sbjct: 251 EATEDDFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTTHESAAKAVDELNGKDFRGQD 310
Query: 177 MKV 179
+ V
Sbjct: 311 LYV 313
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++P + + R LFE+YG V + ++ +GFV+ E A+ ELN
Sbjct: 243 VYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTTHESAAKAVDELN 302
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K +++ NL D+ ++R+
Sbjct: 303 GKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKLRQ 362
Query: 134 LFVPYGTVVECDIVRN 149
+F +G + ++R+
Sbjct: 363 MFSEFGPITSAKVMRD 378
>gi|345309824|ref|XP_001506748.2| PREDICTED: RNA-binding protein 14-like, partial [Ornithorhynchus
anatinus]
Length = 112
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 67/114 (58%), Gaps = 5/114 (4%)
Query: 37 KIFIGNVN-PGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
K+F+GNV+ T+ E + LF ++G V+ C V+K + FVH+ AI+ L+G +
Sbjct: 2 KVFLGNVDGSDTTPEELAALFSRFGTVMSCAVMKQFAFVHVREAAGALRAIEALHGHELR 61
Query: 96 E-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+ L +E SR P T K+FVGN+S + E+R LF +G V+ECD+V+
Sbjct: 62 PGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRGLFERHGPVIECDVVK 112
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 28/35 (80%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 69
T+KIF+GNV+ + + +R LFE++G V+ECDVVK
Sbjct: 78 TWKIFVGNVSAACTSQELRGLFERHGPVIECDVVK 112
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 116 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGM-MV 172
KVF+GN+ + PE + LF +GTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KVFLGNVDGSDTTPEELAALFSRFGTVMSCAVMKQFAFVHVREAAGALRAIEALHGHELR 61
Query: 173 DGKPMKVQISTSR 185
G+ + V++S R
Sbjct: 62 PGRALVVEMSRPR 74
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 82/195 (42%), Gaps = 27/195 (13%)
Query: 21 NISCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------- 68
N CR M P G IFI N++ + + F +G V+ C V
Sbjct: 117 NRPCRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGTVLSCKVATDETGRS 176
Query: 69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGN 121
K YGFVH E E AIK +NG ++N+K + + SRK + T ++V N
Sbjct: 177 KGYGFVHYETAEAAENAIKAVNGMLLNDKKVYVGHHISRKERQSKLEEMRAQFTNLYVKN 236
Query: 122 LSDNTRAPEVRELFVPYGTVVECDI-------VRNYGFVHIDSPD-INKCIKELNGMMVD 173
L E ELF YG V I + +GFV+ ++ D K + ELN +
Sbjct: 237 LDPEVTQDEFIELFKKYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAVDELNDFELK 296
Query: 174 GKPMKVQISTSRVRQ 188
GK + V + + +
Sbjct: 297 GKKLFVSRAQKKAER 311
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++P + + LF+KYG V + K +GFV+ E +E + A+ ELN
Sbjct: 232 LYVKNLDPEVTQDEFIELFKKYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAVDELN 291
Query: 91 GQIVNEKPL----------------------KIEAATSRKGPNTPTTKVFVGNLSDNTRA 128
+ K L K+E + +G N +++ NL D+
Sbjct: 292 DFELKGKKLFVSRAQKKAEREEELRRSYEQAKLEKLSKYQGVN-----LYIKNLEDDVDD 346
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQ 180
++R F P+GT+ C ++R+ +GFV SPD K + E+N M+ KP+ V
Sbjct: 347 DKLRAEFEPFGTITSCKVMRDEKGQSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVS 406
Query: 181 ISTSRVRQRPGVDEVVIGQKSVPVQ 205
++ R +R ++ + + + +Q
Sbjct: 407 LAQRREVRRQQLESQIAQRNQIRMQ 431
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 25/112 (22%)
Query: 4 FDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVV 63
++Q +L K+S+Y ++I N+ + +R FE +G +
Sbjct: 319 YEQAKLEKLSKYQG------------------VNLYIKNLEDDVDDDKLRAEFEPFGTIT 360
Query: 64 ECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
C V+ K +GFV + +E A+ E+N +++ KPL + A R+
Sbjct: 361 SCKVMRDEKGQSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRRE 412
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C V K YGFV +N+E
Sbjct: 111 PSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEE 170
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
+ AI++LNG ++N+K + + ++ + K VFV NLS++T E++ F
Sbjct: 171 SAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAADKAKFNNVFVKNLSESTTDDELKNTF 230
Query: 136 VPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
+GT+ ++R+ +GFV+ + + D + ++ LNG D K V
Sbjct: 231 GEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKNFDDKEWYV 282
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 93/189 (49%), Gaps = 42/189 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ + ++ F ++G + V+++ +GFV+ EN ++ A++ LN
Sbjct: 212 VFVKNLSESTTDDELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALN 271
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ ++K + EAA +G N ++V NL D+
Sbjct: 272 GKNFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGAN-----LYVKNLDDSIGD 326
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+++ELF P+GT+ C ++R+ GFV +P + ++ + E+NG MV KP+ V
Sbjct: 327 EKLKELFSPFGTITSCKVMRDPNGLSRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVT 386
Query: 181 ISTSRVRQR 189
++ + +R
Sbjct: 387 LAQRKEDRR 395
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 79/160 (49%), Gaps = 21/160 (13%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G+++P + + LF + G+VV V ++ YG+V+ N ++ A+
Sbjct: 30 TTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARAL 89
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVE 143
LN +N +P++I S + P+ + +F+ NL + + F +G ++
Sbjct: 90 DVLNFTPLNNRPIRI--MYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILS 147
Query: 144 CDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
C + + YGFV D+ + K I++LNGM+++ K
Sbjct: 148 CKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 187
>gi|681906|dbj|BAA06520.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 314
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 24/177 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ + + + LFE+ G V E D + +GFV M + +E TA+++
Sbjct: 136 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 195
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N +N + L + A R + P P +V+VGNL + + +LF +G V
Sbjct: 196 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 255
Query: 142 VECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
VE +V R +GFV + D ++N+ I L+G ++G+ ++V ++ R +R
Sbjct: 256 VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRR 312
Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
F++++GN+ + LF ++GKVVE VV + +GFV M + +E AI
Sbjct: 228 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 287
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ + + +++ A R
Sbjct: 288 SALDGQNLEGRAIRVNVAEER 308
>gi|226467145|emb|CAX76053.1| RNA-binding protein 4 [Schistosoma japonicum]
Length = 203
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+GN+NP + +R FE +GKV ECDVV NYGFVHME + E AI L I++
Sbjct: 3 KIFVGNLNPESKASDLRKKFEAFGKVTECDVVNNYGFVHMEKESEAEAAIAGLQNAILDG 62
Query: 97 KPLKIEAATSRKG 109
+ +E + ++G
Sbjct: 63 VKINVERSHGKRG 75
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 174
K+FVGNL+ ++A ++R+ F +G V ECD+V NYGFVH++ + I L ++DG
Sbjct: 3 KIFVGNLNPESKASDLRKKFEAFGKVTECDVVNNYGFVHMEKESEAEAAIAGLQNAILDG 62
Query: 175 KPMKVQISTSRVRQRPG 191
+ V+ S + PG
Sbjct: 63 VKINVERSHGKRGGGPG 79
>gi|312371659|gb|EFR19788.1| hypothetical protein AND_21810 [Anopheles darlingi]
Length = 440
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ + EL+ LF + G V C +++ Y F+ + +TA+ +N +
Sbjct: 10 LYVGNLDTSVTEELLCTLFSQMGTVKSCKIIREASNDPYAFIEYASHTSAQTALAAMNKR 69
Query: 93 IVNEKPLKIEAATSRKG-PNTPTTK---VFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+K +K+ ATS P T T++ +FVG+LS +RE F P+G + C IVR
Sbjct: 70 FFLKKEIKVNWATSPGNQPKTDTSQHYHIFVGDLSPEIETETLREAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+ Y FV + + I+ +NG + + ++ ST +
Sbjct: 130 DPQTLKSRGYAFVSFVKKAEAENAIQMMNGQWLGSRSIRTNWSTRK 175
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 37/189 (19%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHME 77
N P + + IF+G+++P E +R F +G++ C +V++ Y FV
Sbjct: 86 NQPKTDTSQHYHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSRGYAFVSFV 145
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP-----------------------NTPT 114
E AI+ +NGQ + + ++ +T RK P +PT
Sbjct: 146 KKAEAENAIQMMNGQWLGSRSIRTNWST-RKPPAPRDNSKGIKSGKTPGFEEIYNNTSPT 204
Query: 115 -TKVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMM- 171
T V+ G NT E +++ F +G + + + ++ G+ I + + + G
Sbjct: 205 NTTVYCGGFPPNTITDELIQKHFAQFGQIHDTRVFKDKGYAFIRFANKESAARAIEGTHN 264
Query: 172 --VDGKPMK 178
V G P+K
Sbjct: 265 SEVQGHPVK 273
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 135 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGY 194
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T +++ N+S
Sbjct: 195 GFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYIKNISG 254
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E R+LF P+G V + R+ +GFV+ + + K + +LNG G+
Sbjct: 255 EVTDDEFRDLFTPFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQD 314
Query: 177 MKV 179
+ V
Sbjct: 315 LYV 317
Score = 42.4 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I+I N++ + + R LF +G V + ++ +GFV+ E A+ +LN
Sbjct: 247 IYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLN 306
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K +++ NL D+ ++R+
Sbjct: 307 GKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKANKYQGVNLYIKNLDDDVDDEKLRQ 366
Query: 134 LFVPYGTVVECDIVRN 149
LF +G + ++R+
Sbjct: 367 LFADFGPITSAKVMRD 382
>gi|443687463|gb|ELT90434.1| hypothetical protein CAPTEDRAFT_110688, partial [Capitella teleta]
Length = 353
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 24/165 (14%)
Query: 39 FIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQI 93
++GN++P + +L+ LF G C ++ Y FV A+ +N +
Sbjct: 1 YVGNLDPTVTEDLLMALFGSIGPCKGCKIIHETGNEPYAFVEFSEHSSAALALGTMNKRT 60
Query: 94 VNEKPLKIEAATSRKGPNTPTTK-------VFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ +K+ ATS P T T + +FVG+LS + P++RE F P+GT+ +C I
Sbjct: 61 CFGREMKVNWATS---PGTQTKQDTSKHHHIFVGDLSPDIETPQLREAFKPFGTISDCKI 117
Query: 147 VRN--------YGFV-HIDSPDINKCIKELNGMMVDGKPMKVQIS 182
+R+ YGFV +++ + I +NG + + ++ +
Sbjct: 118 IRDPQTLKSKGYGFVSYVERKEAENAINSMNGQWIGSRAIRTNWA 162
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 32/148 (21%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G+++P +R F+ +G + +C ++ K YGFV +E AI +
Sbjct: 88 IFVGDLSPDIETPQLREAFKPFGTISDCKIIRDPQTLKSKGYGFVSYVERKEAENAINSM 147
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTTK----------------------VFVGNLSDNTR 127
NGQ + + ++ A + P P TK V+ G +
Sbjct: 148 NGQWIGSRAIRTNWAIRK--PAAPATKETNAQPLTFDEVFKKSSPTNCTVYCGGILSGLT 205
Query: 128 APEVRELFVPYGTVVECDIVRNYGFVHI 155
VR F +G + E + ++ G+ I
Sbjct: 206 EDLVRSAFGEHGKIEEIRVFKDKGYAFI 233
>gi|15233980|ref|NP_194208.1| ribonucleoprotein [Arabidopsis thaliana]
gi|464662|sp|Q04836.1|ROC3_ARATH RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein 1/2/3; Short=AtRBP33; AltName:
Full=RNA-binding protein RNP-T; AltName:
Full=RNA-binding protein cp31; Flags: Precursor
gi|16490|emb|CAA46347.1| RNA-binding protein [Arabidopsis thaliana]
gi|387569|gb|AAA32860.1| 31 kDa RNA binding protein [Arabidopsis thaliana]
gi|475718|gb|AAA18378.1| RNA-binding protein 1 [Arabidopsis thaliana]
gi|4220513|emb|CAA22986.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|7269328|emb|CAB79387.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|332659554|gb|AEE84954.1| ribonucleoprotein [Arabidopsis thaliana]
gi|737169|prf||1921382A RNA-binding protein
Length = 329
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 24/177 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ + + + LFE+ G V E D + +GFV M + +E TA+++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N +N + L + A R + P P +V+VGNL + + +LF +G V
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 270
Query: 142 VECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
VE +V R +GFV + D ++N+ I L+G ++G+ ++V ++ R +R
Sbjct: 271 VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRR 327
Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
F++++GN+ + LF ++GKVVE VV + +GFV M + +E AI
Sbjct: 243 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 302
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ + + +++ A R
Sbjct: 303 SALDGQNLEGRAIRVNVAEER 323
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 27/182 (14%)
Query: 21 NISCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------- 68
N +CR M P G IFI N++ + + F +G V+ C V
Sbjct: 106 NRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDENGNS 165
Query: 69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGN 121
+ YGFVH EN E AI+ +NG ++N+K + + S+K + T VF+ N
Sbjct: 166 RGYGFVHYENGESASAAIQHVNGMLLNDKKVYVGHHVSKKERQAKIDEQKSQFTNVFIKN 225
Query: 122 LSDNTRAPEVRELFVPYGTVVECDI-------VRNYGFV-HIDSPDINKCIKELNGMMVD 173
L + + +++ PYG ++ + R +GFV + + + K ++ LN + VD
Sbjct: 226 LDVSVDDEKFKQILEPYGEILSAVVQKDEQGNSRGFGFVNYKNHEEAAKAVESLNEVEVD 285
Query: 174 GK 175
GK
Sbjct: 286 GK 287
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+FI N++ E + + E YG+++ V K+ +GFV+ +N EE A++ LN
Sbjct: 221 VFIKNLDVSVDDEKFKQILEPYGEILSAVVQKDEQGNSRGFGFVNYKNHEEAAKAVESLN 280
Query: 91 -------------GQIVNEKPLKI----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
Q NE+ ++ E A K ++V NL D+ +
Sbjct: 281 EVEVDGKKIFAARAQKKNEREEELRRNYEQAKLEKLAKYAGVNLYVKNLDDDFDDERLVG 340
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ I+R+ +GFV SPD K + EL+G M+ KP+ V ++ R
Sbjct: 341 EFEPFGTITSAKIMRDEKGTSKGFGFVCFSSPDEATKAVSELSGKMIGSKPLYVSLAQRR 400
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 85/176 (48%), Gaps = 21/176 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ +F G V V ++ Y +V+ N ++G A+++L
Sbjct: 40 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERALEQL 99
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ + +I S++ P T +F+ NL + + + F +G V+ C +
Sbjct: 100 NYSLIKNRACRI--MWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKV 157
Query: 147 V-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
R YGFVH ++ + + I+ +NGM+++ K + V S+ ++ +DE
Sbjct: 158 ATDENGNSRGYGFVHYENGESASAAIQHVNGMLLNDKKVYVGHHVSKKERQAKIDE 213
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P +GT +FI N++P + + F +GK++ C V K Y
Sbjct: 151 CRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGY 210
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH ++ E AI+ +NG ++N+K + + SR+ + T V++ NL
Sbjct: 211 GFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDT 270
Query: 125 NTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKP 176
E +LF +G + +V R +GFV+ + + K + ELN GK
Sbjct: 271 EITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKK 330
Query: 177 MKV 179
+ V
Sbjct: 331 LYV 333
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 22/188 (11%)
Query: 21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YG 72
N S P ++ + +++G ++P + ++ LF G V V ++ Y
Sbjct: 65 NASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYA 124
Query: 73 FVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAP 129
+V+ N E+G A+ ELN ++ +P +I S++ P+ T VF+ NL
Sbjct: 125 YVNFHNMEDGEKALDELNYTLIKGRPCRI--MWSQRDPSLRKMGTGNVFIKNLDPAIDNK 182
Query: 130 EVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181
+ + F +G ++ C + + YGFVH DS N I+ +NGM+++ K + V
Sbjct: 183 ALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH 242
Query: 182 STSRVRQR 189
SR R+R
Sbjct: 243 HVSR-RER 249
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 42/189 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N++ + + LF ++G++ +VK+ +GFV+ N E + A+ ELN
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 91 GQIVNEKPL----------------------KIEAATSRKGPNTPTTKVFVGNLSDNTRA 128
+ K L K+E +G N +F+ NL D
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVN-----LFIKNLQDEVDD 377
Query: 129 PEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
++ F +GT+ I+ + +GFV +P + NK + E+N M+ GKP+ V
Sbjct: 378 ERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 437
Query: 181 ISTSRVRQR 189
++ + +R
Sbjct: 438 LAQRKEVRR 446
>gi|410080926|ref|XP_003958043.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
gi|372464630|emb|CCF58908.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
Length = 412
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 30/181 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G ++ E ++ FE G V+ V+ + YG+V EN E A+KE+
Sbjct: 167 IFVGRLSWSIDDEWLKNEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKEYAEKAVKEM 226
Query: 90 NGQIVNEKPLKIEAATSRKG-------------PNTPTTKVFVGNLSDNTRAPEVRELFV 136
+G+ ++ + + + +TS+ P+ P+ +F+GNLS N + E+F
Sbjct: 227 HGKEIDGREINCDMSTSKPAAGNNDRAKKFGDVPSEPSETLFLGNLSFNADRDNISEMFS 286
Query: 137 PYGTVV--------ECDIVRNYGFV-HIDSPDINKCIKELNGMMVDGKPMKVQISTSRVR 187
+G +V E + + +G+V + + D K + L G +D +P+++ ST R
Sbjct: 287 KFGEIVSVRIPTHPETEQPKGFGYVQYTNVEDAKKALDALQGEYIDNRPVRLDFSTPRPP 346
Query: 188 Q 188
Q
Sbjct: 347 Q 347
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C V K YGFV E DE
Sbjct: 122 PSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVATEMSGESKGYGFVQYEQDE 181
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGP----NTPT-TKVFVGNLSDNTRAPEVRELF 135
+ AI ELNG ++N+K + + ++ +P V+V NLS++T ++ELF
Sbjct: 182 SAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTEDNLKELF 241
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKPMKV 179
+G + +VR +GFV+ ++PD +++LNG D K + V
Sbjct: 242 GNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNGKKFDDKELYV 293
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 86/185 (46%), Gaps = 33/185 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ + ++ LF +G + VV+ +GFV+ EN ++ A+++LN
Sbjct: 223 VYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLN 282
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPE-VR 132
G+ ++K L + E + T +++ NL + E ++
Sbjct: 283 GKKFDDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKLK 342
Query: 133 ELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTS 184
ELF +GT+ C ++R+ GFV S D + + +NG MV KP+ V ++
Sbjct: 343 ELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQR 402
Query: 185 RVRQR 189
+ +R
Sbjct: 403 KEERR 407
>gi|681908|dbj|BAA06521.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 304
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 24/177 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ + + + LFE+ G V E D + +GFV M + +E TA+++
Sbjct: 126 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 185
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N +N + L + A R + P P +V+VGNL + + +LF +G V
Sbjct: 186 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 245
Query: 142 VECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
VE +V R +GFV + D ++N+ I L+G ++G+ ++V ++ R +R
Sbjct: 246 VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRR 302
Score = 42.7 bits (99), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
F++++GN+ + LF ++GKVVE VV + +GFV M + +E AI
Sbjct: 218 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 277
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ + + +++ A R
Sbjct: 278 SALDGQNLEGRAIRVNVAEER 298
>gi|319411853|emb|CBQ73896.1| probable PAB1-mRNA polyadenylate-binding protein [Sporisorium
reilianum SRZ2]
Length = 650
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 51/184 (27%), Positives = 89/184 (48%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
++ NV+P + E LF +YGK+ C + K +GFV+ E+ E +TA+ EL+
Sbjct: 229 VYAKNVDPDVTDEEFEKLFTRYGKITSCVLQRDDDGKSKGFGFVNFEDHNEAQTAVDELH 288
Query: 91 -----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E+ L+ EAA + K +++ N+ ++ +RE
Sbjct: 289 DSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLRE 348
Query: 134 LFVPYGTVVECDIVR-------NYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F P+G + C I+R +GFV P+ NK + E+NG M+D +P+ V ++ +
Sbjct: 349 EFAPFGAITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALAQRK 408
Query: 186 VRQR 189
+R
Sbjct: 409 DDRR 412
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 26/185 (14%)
Query: 21 NISCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN----- 70
N CR M P G IFI N++ G + + F +G ++ C V N
Sbjct: 115 NRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNDTGSL 174
Query: 71 -YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNL 122
YGFVH E E AIK +NG ++N+K + + RK T V+ N+
Sbjct: 175 GYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRANFTNVYAKNV 234
Query: 123 SDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELNGMMVDG 174
+ E +LF YG + C + R+ +GFV+ D + + EL+ G
Sbjct: 235 DPDVTDEEFEKLFTRYGKITSCVLQRDDDGKSKGFGFVNFEDHNEAQTAVDELHDSDFKG 294
Query: 175 KPMKV 179
+ + V
Sbjct: 295 QKLFV 299
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ +++ F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 175
F +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
>gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabidopsis thaliana]
gi|23505889|gb|AAN28804.1| At4g24770/F22K18_30 [Arabidopsis thaliana]
Length = 329
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 24/173 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ + + + LFE+ G V E D + +GFV M + +E TA+++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N +N + L + A R + P P +V+VGNL + + +LF +G V
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 270
Query: 142 VECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSR 185
VE +V R +GFV + D ++N+ I L+G ++G+ ++V ++ R
Sbjct: 271 VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
F++++GN+ + LF ++GKVVE VV + +GFV M + +E AI
Sbjct: 243 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 302
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ + + +++ A R
Sbjct: 303 SALDGQNLEGRAIRVNVAEER 323
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C V K YGFV E DE
Sbjct: 122 PSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVATEMSGESKGYGFVQYEQDE 181
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGP----NTPT-TKVFVGNLSDNTRAPEVRELF 135
+ AI ELNG ++N+K + + ++ +P V+V NLS++T ++ELF
Sbjct: 182 SAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTEDNLKELF 241
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKPMKV 179
+G + +VR +GFV+ ++PD +++LNG D K + V
Sbjct: 242 GNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNGKKFDDKELYV 293
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 86/185 (46%), Gaps = 33/185 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ + ++ LF +G + VV+ +GFV+ EN ++ A+++LN
Sbjct: 223 VYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLN 282
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPE-VR 132
G+ ++K L + E + T +++ NL + E ++
Sbjct: 283 GKKFDDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKLK 342
Query: 133 ELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTS 184
ELF +GT+ C ++R+ GFV S D + + +NG MV KP+ V ++
Sbjct: 343 ELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQR 402
Query: 185 RVRQR 189
+ +R
Sbjct: 403 KEERR 407
>gi|332376136|gb|AEE63208.1| unknown [Dendroctonus ponderosae]
Length = 371
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 18/166 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ +L+ LF + G V C +++ Y FV N + TA+ +N +
Sbjct: 10 LYVGNLDISVQEDLLCALFSQIGPVKGCKIIREPGNDPYAFVEFTNHQSASTALIAMNKR 69
Query: 93 IVNEKPLKIEAATSRKG-PNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+ +K +K+ ATS P T T+ +FVG+LS +RE F P+G + C IVR
Sbjct: 70 VFLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETDTLREAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+ Y FV + + I+ +NG + + ++ ST +
Sbjct: 130 DPQTLKSKGYAFVSFVKKAEAENAIQAMNGQWLGSRSIRTNWSTRK 175
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 30/160 (18%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + IF+G+++P + +R F +G++ C +V K Y FV
Sbjct: 86 NQPKTDTSNHHHIFVGDLSPEIETDTLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---------------------NTPT-T 115
E AI+ +NGQ + + ++ +T + P +PT T
Sbjct: 146 KKAEAENAIQAMNGQWLGSRSIRTNWSTRKPPPPRAEKPNQSKKQITFDEVYNQTSPTNT 205
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI 155
V+ G + V + F +G + + + ++ G+ I
Sbjct: 206 TVYCGGFASGLTDDLVTKTFSRFGAIQDIRVFKDKGYAFI 245
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 27/173 (15%)
Query: 23 SCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KN 70
+CR M P G IFI N++ + F ++G ++ C V +
Sbjct: 94 ACRIMWKHRDPSIRKSGAGNIFIKNLDKTVDTRTLHDTFSQFGNILSCKVSMDEHANSRG 153
Query: 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT------TKVFVGNLSD 124
+GFV E EE AI ++NG ++ +K L + R G T T V+V N D
Sbjct: 154 FGFVQFETAEEANEAISKVNGMLLEDKRLFVGPFIPR-GERESTNGERRFTNVYVKNFPD 212
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELNG 169
N + R+ F YG + C I+R +GFV+ ++ D KC +E+NG
Sbjct: 213 NVSDDDFRKSFERYGEITSCKIMRKEDGTSKCFGFVNFKEADDAKKCCEEMNG 265
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 44/184 (23%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N S + R FE+YG++ C +++ +GFV+ + ++ + +E+N
Sbjct: 205 VYVKNFPDNVSDDDFRKSFERYGEITSCKIMRKEDGTSKCFGFVNFKEADDAKKCCEEMN 264
Query: 91 GQIVNEKPL---------KIEAATSRKG--------------PNTPTTKVFVGNLSDNTR 127
GQ KP + E + RK N +++ NL D
Sbjct: 265 GQ----KPFGGERDIYAGRAEKESERKEKLKKKYDQIRMERLKNNQLVNLYIKNLDDTID 320
Query: 128 APEVRELFVPYGTVVECDIVRN---------YGFVHIDSP-DINKCIKELNGMMVDGKPM 177
++R+ F +GT+ ++R+ +GFV P + + + +NG MV KP+
Sbjct: 321 DEKLRQTFEQFGTITSAKVMRDKDRPEVSKGFGFVCFAQPEEATRAVTAMNGQMVGTKPI 380
Query: 178 KVQI 181
V +
Sbjct: 381 YVAL 384
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 27/108 (25%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
++DQ +++ R NNQ+ ++I N++ E +R FE++G +
Sbjct: 293 KYDQ---IRMERLKNNQL---------------VNLYIKNLDDTIDDEKLRQTFEQFGTI 334
Query: 63 VECDVV---------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101
V+ K +GFV EE A+ +NGQ+V KP+ +
Sbjct: 335 TSAKVMRDKDRPEVSKGFGFVCFAQPEEATRAVTAMNGQMVGTKPIYV 382
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 21/179 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+FI N++ + + F +GK++ V+ K Y FVH ++ AI+E+NG
Sbjct: 100 VFIKNLDKSIDNKSLYECFSAFGKILSSKVMSDDRGSKGYAFVHFQSQSAADRAIEEMNG 159
Query: 92 QIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVV-- 142
+ + + + + SRK + T V++ N D+ +RE+F YG ++
Sbjct: 160 KFLKDCKVFVGRFKSRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSV 219
Query: 143 -----ECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
C R +GFV DS + K ++E+NG V+G+P+ V + +V ++ + ++
Sbjct: 220 KVMTNSCGKSRGFGFVSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQM 278
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N E +R +F YG+++ V+ N +GFV ++ E R A++E+N
Sbjct: 192 VYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGFVSFDSHEAARKAVEEMN 251
Query: 91 GQIVNEKPL-------KIEAATSRKG----------PNTPTTKVFVGNLSDNTRAPEVRE 133
G+ VN +P+ K+E K K+++ NL +N ++R+
Sbjct: 252 GKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKERIRGCQGAKLYIKNLDENIDDEKLRK 311
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F +G++ ++ + +G + S D + + +NG ++ KP+ + ++
Sbjct: 312 EFSSFGSISRVKVMQEEGQSKGFGLICFSSSEDAARAMTVMNGRILGSKPLNIALA 367
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D+ ++EL
Sbjct: 151 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGK 175
F YG + ++ + +GFV + D NK ++E+NG ++GK
Sbjct: 211 FSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGK 259
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 95/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF KYGK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SPD K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + + G +++P +
Sbjct: 373 ERKAHLTNQYMQRIAGMRALPANTI 397
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D+ ++E+
Sbjct: 151 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEI 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGK 175
F YG + ++ R +GFV + D NK ++E+NG ++GK
Sbjct: 211 FDKYGKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEEMNGTELNGK 259
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ +F+KYGK + V+ + +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G +N +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + + G +++P A+
Sbjct: 373 ERKAHLTNQYMQRIAGMRAMPANAI 397
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 20/162 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++P + + F +G V+ C + K YGFV E +E
Sbjct: 119 PSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEE 178
Query: 81 EGRTAIKELNGQIVNEKP----LKIEAATSRKGPNTPT-TKVFVGNLSDNTRAPEVRELF 135
+ AIK LNG ++N+K L + G +P T V+V NLS+ T +++ +F
Sbjct: 179 AAQNAIKRLNGMLINDKQVYVGLFVRHQERNXGNGSPKFTNVYVKNLSETTTDDDLKNIF 238
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNG 169
YG++ ++R+ +GFV+ S D ++ LNG
Sbjct: 239 GKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNG 280
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 83/185 (44%), Gaps = 33/185 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ + ++ +F KYG + V+++ +GFV+ ++ + A++ LN
Sbjct: 220 VYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLN 279
Query: 91 GQIVNEKPL------------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G N+ + K E K +++ NL D+ ++
Sbjct: 280 GATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGXNLYLKNLDDSVNDEKLX 339
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTS 184
ELF +GT+ C ++ + GFV +P + + + +NG M+ KP+ V ++
Sbjct: 340 ELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQR 399
Query: 185 RVRQR 189
+ ++
Sbjct: 400 KEERK 404
>gi|475719|gb|AAA18379.1| RNA-binding protein 2 [Arabidopsis thaliana]
Length = 315
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 24/177 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ + + + LFE+ G V E D + +GFV M + +E TA+++
Sbjct: 137 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 196
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N +N + L + A R + P P +V+VGNL + + +LF +G V
Sbjct: 197 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 256
Query: 142 VECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
VE +V R +GFV + D ++N+ I L+G ++G+ ++V ++ R +R
Sbjct: 257 VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRR 313
Score = 42.7 bits (99), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
F++++GN+ + LF ++GKVVE VV + +GFV M + +E AI
Sbjct: 229 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 288
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ + + +++ A R
Sbjct: 289 SALDGQNLEGRAIRVNVAEER 309
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 79/184 (42%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 133 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDETGASKGY 192
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T ++V N+
Sbjct: 193 GFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPV 252
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGK 175
E RELF +G V + R+ +GFV+ I+ K + ELNG G+
Sbjct: 253 EATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKAVDELNGKDFKGQ 312
Query: 176 PMKV 179
+ V
Sbjct: 313 DLYV 316
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 25/137 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
I++ N+ + E R LFEK+G V + ++ +GFV+ N E A+ EL
Sbjct: 245 IYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKAVDEL 304
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
NG+ + L + EAA K ++V NL D+ ++R
Sbjct: 305 NGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVDDDKLR 364
Query: 133 ELFVPYGTVVECDIVRN 149
ELF P+G++ ++R+
Sbjct: 365 ELFTPFGSITSAKVMRD 381
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 20/162 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P GT IFI N++ + + F +G ++ C V K YGFV E DE
Sbjct: 112 PSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDPAGESKGYGFVQYERDE 171
Query: 81 EGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
AI++LNG ++N+K P + N V+V NL++ T +++E+F
Sbjct: 172 AAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGNVKFNNVYVKNLAETTTEDDLKEIF 231
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNG 169
+G + ++R+ +GFV+ +SPD +++LNG
Sbjct: 232 GKFGAITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNG 273
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 84/180 (46%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ T+ + ++ +F K+G + V+++ +GFV+ E+ +E A+++LN
Sbjct: 213 VYVKNLAETTTEDDLKEIFGKFGAITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 272
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++K K E T +++ NL D ++RE
Sbjct: 273 GKKFSDKEWYVGRAQKKSEREIELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRE 332
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF +GT+ C ++R+ GFV S D ++ + E+N MV KP+ V ++ +
Sbjct: 333 LFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVALAQRK 392
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 163
P T ++VG+L + + ++ ++F G VV + R+ Y +V+ ++P D +
Sbjct: 30 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 89
Query: 164 IKELNGMMVDGKPMKVQIS 182
++ LN ++G+P+++ S
Sbjct: 90 LEMLNFTPINGRPIRIMYS 108
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 87/183 (47%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+ +NG ++N++ + + SRK T V++ N ++ + +++ +
Sbjct: 151 ANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNI 210
Query: 135 FVPYGTVVECDIV-------RNYGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ R +GFV+ ++ D + + E+NG ++G+ + V + R+
Sbjct: 211 FTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRL 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 31/185 (16%)
Query: 29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEE 81
G +V ++I N E ++ +F ++GK + V+ + +GFV+ N +
Sbjct: 184 GAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGD 243
Query: 82 GRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSD 124
R A+ E+NG+ +N +K L+ + RK ++ +V NL D
Sbjct: 244 ARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDD 303
Query: 125 NTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPM 177
+ ++R+ F PYGT+ ++ R +GFV SP + K + E+NG +V KP+
Sbjct: 304 SIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 178 KVQIS 182
V ++
Sbjct: 364 YVALA 368
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F YG + V+ + +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSD 124
+IV+ KPL + A ++ T ++ L+
Sbjct: 356 RIVSTKPLYVALAQRKEERKAILTNQYIQRLAS 388
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 21/169 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 175
F +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 95/194 (48%), Gaps = 21/194 (10%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
G +FI N++ + + F +G ++ V+ K YGFVH ++ AI+
Sbjct: 96 GVGNVFIKNLDKSIDNKTLYEHFSPFGTIMSSKVMTDGEGSKGYGFVHYQDRRAADRAIE 155
Query: 88 ELNGQIVNEKPLKIEAATSRKG-----PNTPT--TKVFVGNLSDNTRAPEVRELFVPYGT 140
E+NG+++ E L + SRK + PT T V++ N D+ ++RE+F YG
Sbjct: 156 EMNGKLLRESTLFVARFKSRKDREAELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQ 215
Query: 141 VVECDIVRN-------YGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ ++++ +GFV DS + K ++++NG ++G+ + V + +V ++ +
Sbjct: 216 TLSVKVMKDATGKSKGFGFVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAEL 275
Query: 193 DEVVIGQKSVPVQA 206
E+ K ++A
Sbjct: 276 KEMFEQMKKERIRA 289
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 77/175 (44%), Gaps = 31/175 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N E +R +F KYG+ + V+K+ +GFV ++ E + A++++N
Sbjct: 192 VYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSHEAAKNAVEDMN 251
Query: 91 GQIVN---------------EKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ +N + LK E + K+++ NL D +R+
Sbjct: 252 GQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRK 311
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQI 181
F +G++ ++ + +G + SP K + E+NG ++ KP+ + +
Sbjct: 312 EFSVFGSICRVKVMQEAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIAL 366
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 87/183 (47%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+ +NG ++N++ + + SRK T V++ N ++ + +++ +
Sbjct: 151 ANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNI 210
Query: 135 FVPYGTVVECDIV-------RNYGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ R +GFV+ ++ D + + E+NG ++G+ + V + R+
Sbjct: 211 FTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRL 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 31/185 (16%)
Query: 29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEE 81
G +V ++I N E ++ +F ++GK + V+ + +GFV+ N +
Sbjct: 184 GAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGD 243
Query: 82 GRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSD 124
R A+ E+NG+ +N +K L+ + RK ++ +V NL D
Sbjct: 244 ARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDD 303
Query: 125 NTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPM 177
+ ++R+ F PYGT+ ++ R +GFV SP + K + E+NG +V KP+
Sbjct: 304 SIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 178 KVQIS 182
V ++
Sbjct: 364 YVALA 368
Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F YG + V+ + +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSD 124
+IV+ KPL + A ++ T ++ L+
Sbjct: 356 RIVSTKPLYVALAQRKEERKAILTNQYIQRLAS 388
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 175
F +G + ++R+ +GFV + D NK ++E+NG ++GK
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGK 259
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D+ ++EL
Sbjct: 151 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 175
F YG + ++ R +GFV + D NK ++++NG ++GK
Sbjct: 211 FDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGK 259
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 91/205 (44%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF+KYGK + V+ + +GFV E E+ A++++N
Sbjct: 193 VYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMN 252
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G +N K + K E + +++ NL D ++R+
Sbjct: 253 GTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + + G +++P +
Sbjct: 373 ERKAHLTNQYMQRIAGMRAMPANTI 397
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D+ ++EL
Sbjct: 151 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F YG + ++ + +GFV + D NK ++E+NG ++GK + V + +V
Sbjct: 211 FSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF KYGK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G + ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGAITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + + G +++P +
Sbjct: 373 ERKAHLTNQYMQRIAGMRALPANTI 397
>gi|149392545|gb|ABR26075.1| chloroplast 29 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 205
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 30/184 (16%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
K+F+GN+ + LFE+ G V +VV + +GFV M EE AI+
Sbjct: 21 LKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAIE 80
Query: 88 ELNGQIVNEKPLKIEAA----TSRKGPNTP---------TTKVFVGNLSDNTRAPEVREL 134
+ NG +PL++ + P +P + K++VGNL+ + L
Sbjct: 81 QFNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENL 140
Query: 135 FVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F GTV++ ++ R +GFV S ++N I L+G+ +DG+ ++V ++ S+
Sbjct: 141 FSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVAESK 200
Query: 186 VRQR 189
R++
Sbjct: 201 PRRQ 204
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 21/169 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 175
F +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 21/188 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEE 81
P G IFI N++ + + F +G ++ C + + YGFVH E +E
Sbjct: 92 PSLRKSGVGNIFIKNLDKNIDNKALYDTFSAFGNILSCKIAMDQNGSLGYGFVHFETEEA 151
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
R +I+++NG ++N K + + SRK T V+V NL++ ++RE+
Sbjct: 152 ARNSIEKVNGMLLNGKKVFVGRFMSRKERLEMLGDKAKKFTNVYVKNLNETMDDKKLREM 211
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F +G ++ ++ R +GFV D + K ++ELN V+GK + V + +
Sbjct: 212 FEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYVGRAQKKA 271
Query: 187 RQRPGVDE 194
++ + E
Sbjct: 272 ERQAELKE 279
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 81/180 (45%), Gaps = 33/180 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N+N + +R +FE +GK++ ++ + +GFV ++ E A++ELN
Sbjct: 194 VYVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEELN 253
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK------------------VFVGNLSDNTRAPEVR 132
+ V K + + A +K K ++V NL + +R
Sbjct: 254 NKEVEGKEIYVGRA-QKKAERQAELKEKFERMKMERINRYQGVNLYVKNLDEQIDDERLR 312
Query: 133 ELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
+ F +GT+ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 KEFSQFGTITSARVMTEGGRTKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVALAQRK 372
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F ++G + V+ K +GFV + EE A+ E+NG
Sbjct: 297 LYVKNLDEQIDDERLRKEFSQFGTITSARVMTEGGRTKGFGFVCFSSPEEATKAVTEMNG 356
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSD-NTRAPEVRELFVPYGT 140
+IV KPL + A ++ ++ ++ + V ++F P GT
Sbjct: 357 RIVVAKPLYVALAQRKEDRKAHLAAQYMQRIAGMRMQGQGVNQIFGPGGT 406
>gi|194742700|ref|XP_001953839.1| GF17967 [Drosophila ananassae]
gi|190626876|gb|EDV42400.1| GF17967 [Drosophila ananassae]
Length = 471
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 22/169 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S +L+ LF G V C +++ Y F+ + TA+ +N +
Sbjct: 9 LYVGNLDSSVSEDLLIALFSTMGHVKSCKIIREPGNDPYAFIEYSTYQAATTALTAMNKR 68
Query: 93 IVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ +K +K+ ATS N P T +FVG+LS +RE F P+G + C I
Sbjct: 69 LFLDKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRI 126
Query: 147 VRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
VR+ Y FV + + I +NG + + ++ ST ++
Sbjct: 127 VRDPHTMKSKGYAFVSFVKKAEAENAITAMNGQWIGSRSIRTNWSTRKL 175
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G+++P E +R F +G++ C +V K Y FV E AI +
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAITAM 156
Query: 90 NGQIVNEKPLKIEAATSRKGP 110
NGQ + + ++ +T + P
Sbjct: 157 NGQWIGSRSIRTNWSTRKLPP 177
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D+ ++EL
Sbjct: 151 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 175
F YG + ++ R +GFV + D NK ++++NG ++GK
Sbjct: 211 FDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGK 259
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 91/205 (44%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF+KYGK + V+ + +GFV E E+ A++++N
Sbjct: 193 VYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMN 252
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G +N K + K E + +++ NL D ++R+
Sbjct: 253 GTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + + G +++P +
Sbjct: 373 ERKAHLTNQYMQRIAGMRAMPANTI 397
>gi|242035621|ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
gi|241919059|gb|EER92203.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
Length = 262
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 88/178 (49%), Gaps = 24/178 (13%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
++F+GN+ + LFE+ G V +V+ + +GFV M + +E A++
Sbjct: 83 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVQEVEAAVE 142
Query: 88 ELNGQIVNEKPLKIEAA-------TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
+ NG +++ + L++ + +S++GP +V+VGNLS + LF G
Sbjct: 143 QFNGYVLDGRSLRVNSGPPPPRDPSSQRGPRGDANRVYVGNLSWGVDNSALANLFSEQGE 202
Query: 141 VVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
V+E IV R +GFV S ++ I L+G +DG+ ++V ++ S+ +R
Sbjct: 203 VLEARIVYDRESGRSRGFGFVTYGSAEEVENAISNLDGSDLDGRQIRVTVAESKPPRR 260
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG ++GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|255085602|ref|XP_002505232.1| predicted protein [Micromonas sp. RCC299]
gi|226520501|gb|ACO66490.1| predicted protein [Micromonas sp. RCC299]
Length = 211
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 29/177 (16%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---------KNYGFVHMENDEEGRTAIK 87
K+++G++ + E + +F+ +G+V++ DV+ K + FV EE A K
Sbjct: 34 KLYVGHLPSTMNAERMLEMFKPFGRVLQIDVIPDRERQLSCKGFAFVLFSTPEEA-IAAK 92
Query: 88 ELNGQIVNEKPLKIEAATSRKGPNTPT----------TKVFVGNLSDNTRAPEVRELFVP 137
LNG +V K + + + P P K++V + D+ RA E++ L P
Sbjct: 93 ALNGHVVEGKSIDVRLKAEPRAPREPVNAPVAPVNDDAKLYVAYMPDHYRAEELKMLLQP 152
Query: 138 YGTVVECDIV--------RNYGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
YG + ++ R +GF +D I+ LNG M+DGK + V+I+ ++
Sbjct: 153 YGLPSDVRVITDRETGRSRGFGFAQMMDEQQAMAAIQGLNGQMLDGKTLVVRIAGAK 209
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---------RNYGFVHIDSPDIN 161
N K++VG+L A + E+F P+G V++ D++ + + FV +P+
Sbjct: 29 NDDAAKLYVGHLPSTMNAERMLEMFKPFGRVLQIDVIPDRERQLSCKGFAFVLFSTPEEA 88
Query: 162 KCIKELNGMMVDGKPMKVQIST 183
K LNG +V+GK + V++
Sbjct: 89 IAAKALNGHVVEGKSIDVRLKA 110
>gi|29841103|gb|AAP06116.1| similar to NM_031492 RNA-binding proteinlark in Homo sapiens
[Schistosoma japonicum]
gi|226467147|emb|CAX76054.1| RNA-binding protein 4 [Schistosoma japonicum]
gi|226467149|emb|CAX76055.1| RNA-binding protein 4 [Schistosoma japonicum]
gi|226467151|emb|CAX76056.1| RNA-binding protein 4 [Schistosoma japonicum]
Length = 281
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+GN+NP + +R FE +GKV ECDVV NYGFVHME + E AI L I++
Sbjct: 3 KIFVGNLNPESKASDLRKKFEAFGKVTECDVVNNYGFVHMEKESEAEAAIAGLQNAILDG 62
Query: 97 KPLKIEAATSRKG 109
+ +E + ++G
Sbjct: 63 VKINVERSHGKRG 75
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 174
K+FVGNL+ ++A ++R+ F +G V ECD+V NYGFVH++ + I L ++DG
Sbjct: 3 KIFVGNLNPESKASDLRKKFEAFGKVTECDVVNNYGFVHMEKESEAEAAIAGLQNAILDG 62
Query: 175 KPMKVQISTSRVRQRPG 191
+ V+ S + PG
Sbjct: 63 VKINVERSHGKRGGGPG 79
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG ++GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.075, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 127 CRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGY 186
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E +AIK +NG ++NEK + + +K + T ++V N+
Sbjct: 187 GFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDP 246
Query: 125 NTRAPEVRELFVPYGTVVECDIV-------RNYGFV-HIDSPDINKCIKELNGMMVDGKP 176
E R LF YG + + R +GFV +I D NK ++ELN G+
Sbjct: 247 EATDDEFRALFEKYGDITSASLAHDQEGKSRGFGFVNYIRHEDANKAVEELNNSDFKGQA 306
Query: 177 MKV 179
+ V
Sbjct: 307 LYV 309
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 81/167 (48%), Gaps = 21/167 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEND 79
P ++ + +++G ++P + ++ LF G+V V ++ Y +V+ +
Sbjct: 48 PSNANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 107
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFV 136
+G A++ELN ++ KP +I S++ P T VF+ NL + + F
Sbjct: 108 NDGERALEELNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFA 165
Query: 137 PYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
+G ++ C + ++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 166 AFGNILSCKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEK 212
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
I++ N++P + + R LFEKYG + + + +GFV+ E+ A++ELN
Sbjct: 239 IYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRGFGFVNYIRHEDANKAVEELN 298
Query: 91 -----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E+ L+ EA K ++V NL+D E+R+
Sbjct: 299 NSDFKGQALYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDDELRK 358
Query: 134 LFVPYGTVVECDIVRN 149
+F PYG + ++R+
Sbjct: 359 IFEPYGAITSAKVMRD 374
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN- 149
G VN+ P AA S PN+ + ++VG L + + ELF G V + R+
Sbjct: 34 GNDVNDMPTPTSAAPSNANPNSAS--LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDA 91
Query: 150 -------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
Y +V+ +S D + ++ELN ++ GKP ++ S
Sbjct: 92 VTRRSLGYAYVNYNSANDGERALEELNYTLIKGKPCRIMWS 132
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 130 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGY 189
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T V+V N+
Sbjct: 190 GFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIGP 249
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKP 176
+ E RELF +G V + R+ +GFV+ + + K +++LNG G+
Sbjct: 250 DVTDDEFRELFEKFGDVTSSSLARDQEGKPRGFGFVNFTTHEAAFKAVEDLNGKDFRGQE 309
Query: 177 MKV 179
+ V
Sbjct: 310 LYV 312
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 74/222 (33%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ P + + R LFEK+G V + ++ +GFV+ E A+++LN
Sbjct: 242 VYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPRGFGFVNFTTHEAAFKAVEDLN 301
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K +++ NL D+ ++R+
Sbjct: 302 GKDFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQ 361
Query: 134 LFVPYGTVVECDIVRN-------------------------------------------- 149
+F +G + ++R+
Sbjct: 362 MFAEFGPITSAKVMRDTPQEGEEEVKDQEKDKENQKEAENEAESAESAEKKAEKKSDKKL 421
Query: 150 -----YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+GFV +P D K + E+N M++ KP+ V ++ +
Sbjct: 422 GKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRK 463
>gi|226467139|emb|CAX76050.1| RNA-binding protein 4 [Schistosoma japonicum]
gi|226467143|emb|CAX76052.1| RNA-binding protein 4 [Schistosoma japonicum]
Length = 275
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+GN+NP + +R FE +GKV ECDVV NYGFVHME + E AI L I++
Sbjct: 3 KIFVGNLNPESKASDLRKKFEAFGKVTECDVVNNYGFVHMEKESEAEAAIAGLQNAILDG 62
Query: 97 KPLKIEAATSRKG 109
+ +E + ++G
Sbjct: 63 VKINVERSHGKRG 75
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 174
K+FVGNL+ ++A ++R+ F +G V ECD+V NYGFVH++ + I L ++DG
Sbjct: 3 KIFVGNLNPESKASDLRKKFEAFGKVTECDVVNNYGFVHMEKESEAEAAIAGLQNAILDG 62
Query: 175 KPMKVQISTSRVRQRPG 191
+ V+ S + PG
Sbjct: 63 VKINVERSHGKRGGGPG 79
>gi|256085695|ref|XP_002579049.1| rna binding motif protein 4lark [Schistosoma mansoni]
gi|353228730|emb|CCD74901.1| putative rna binding motif protein 4,lark [Schistosoma mansoni]
Length = 286
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+GN+NP + +R FE +GKV ECDVV NYGFVHME + E AI+ L I++
Sbjct: 3 KIFVGNLNPESKPSDLRKKFEAFGKVTECDVVNNYGFVHMEKESEAEAAIEGLQNAILDG 62
Query: 97 KPLKIEAATSRKG 109
+ +E + ++G
Sbjct: 63 VKINVERSHGKRG 75
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 174
K+FVGNL+ ++ ++R+ F +G V ECD+V NYGFVH++ + I+ L ++DG
Sbjct: 3 KIFVGNLNPESKPSDLRKKFEAFGKVTECDVVNNYGFVHMEKESEAEAAIEGLQNAILDG 62
Query: 175 KPMKVQISTSRVRQRPG 191
+ V+ S + PG
Sbjct: 63 VKINVERSHGKRGGGPG 79
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D+ ++EL
Sbjct: 151 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F YG + ++ + +GFV + D NK ++E+NG ++GK + V + +V
Sbjct: 211 FSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF KYGK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K ++ +A R+ ++ ++ NL D ++R+
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + + G +++P +
Sbjct: 373 ERKAHLTNQYMQRIAGMRALPANTI 397
Score = 44.3 bits (103), Expect = 0.031, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
RF+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 RFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 130 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGASKGY 189
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T V+V N++
Sbjct: 190 GFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAA 249
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
+ + R+LF YG V + R+ +GFV+ + + +K + ELN G+
Sbjct: 250 DVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVDELNNKDFHGQD 309
Query: 177 MKV 179
+ V
Sbjct: 310 LYV 312
>gi|255713222|ref|XP_002552893.1| KLTH0D03916p [Lachancea thermotolerans]
gi|238934273|emb|CAR22455.1| KLTH0D03916p [Lachancea thermotolerans CBS 6340]
Length = 505
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 31/181 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G ++ E ++ FE G V+ V+ + YG+V EN A+KE+
Sbjct: 258 IFVGRLSWSVDDEWLKTEFEPIGGVISARVIMERGTDRSRGYGYVDFENKFYAEKAVKEM 317
Query: 90 NGQIVNEKPLKIEAATSRKG--------------PNTPTTKVFVGNLSDNTRAPEVRELF 135
+G+ ++ +P+ + +TS+ P+ P+ +F+GNLS N + E F
Sbjct: 318 HGKEIDGRPINCDMSTSKPAGNPRNDRAKQFGDTPSQPSDTLFLGNLSFNADRDNIFETF 377
Query: 136 VPYGTVV--------ECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
+G VV E + + +G+V S D K + L G +D +P+++ ST +
Sbjct: 378 AEHGEVVSVRLPTHPETNQPKGFGYVQYSSVDEAQKAFEALQGHYIDNRPVRLDFSTPKP 437
Query: 187 R 187
R
Sbjct: 438 R 438
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKC 163
P T +FVG LS + ++ F P G V+ ++ R YG+V ++ K
Sbjct: 255 PAT-IFVGRLSWSVDDEWLKTEFEPIGGVISARVIMERGTDRSRGYGYVDFENKFYAEKA 313
Query: 164 IKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
+KE++G +DG+P+ +STS+ P D
Sbjct: 314 VKEMHGKEIDGRPINCDMSTSKPAGNPRNDRA 345
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D+ ++EL
Sbjct: 151 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGK 175
F YG + ++ + +GFV + D NK ++E+NG ++GK
Sbjct: 211 FSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGK 259
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N ++ LF KYGK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SPD K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + + G +++P +
Sbjct: 373 ERKAHLTNQYMQRIAGMRALPANTI 397
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.064, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 89/184 (48%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ + ++ F +YG + V+++ +GFV+ EN E+ A++ LN
Sbjct: 222 VYVKNLSEVTTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 281
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++K + E +S G ++V NL D ++RE
Sbjct: 282 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDAGNKFDGLNLYVKNLDDTVTDEKLRE 341
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF +GT+ C ++R+ GFV + + ++ + E+NG MV GKP+ V ++ +
Sbjct: 342 LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 401
Query: 186 VRQR 189
+R
Sbjct: 402 EERR 405
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 20/166 (12%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAI 86
G +F+ N++ + + F G +V C V + YGFV + ++ + AI
Sbjct: 127 GVGNLFVKNLDKSVDNKTLHETFSGCGTIVSCKVAADHMGQSRGYGFVQFDTEDSAKNAI 186
Query: 87 KELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
++LNG+++N+K P + T V+V NLS+ T E++ F YG++
Sbjct: 187 EKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEVTTDDELKTTFGQYGSI 246
Query: 142 VECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
++R+ +GFV+ ++P D + ++ LNG D K V
Sbjct: 247 SSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYV 292
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 17/155 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++ + + F + +VV V ++ YG+V+ N E+ A+++L
Sbjct: 43 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQKL 102
Query: 90 NGQIVNEKPLKIE-AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
N +N K ++I ++ + +FV NL + + E F GT+V C +
Sbjct: 103 NYSTLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHETFSGCGTIVSCKVAA 162
Query: 148 ------RNYGFVHIDSPDINK-CIKELNGMMVDGK 175
R YGFV D+ D K I++LNG +++ K
Sbjct: 163 DHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDK 197
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N S E++R +FEKYG++ V+ + +GFV E+ + A ELN
Sbjct: 194 VYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELN 253
Query: 91 G-QIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G ++V KPL K E S + ++V NL D +R
Sbjct: 254 GKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLR 313
Query: 133 ELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+ F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 314 KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 373
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 24/184 (13%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P G +FI N++ + + F +G ++ C V K Y
Sbjct: 83 RIMWSQRD-PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGY 141
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E +E +I+++NG ++N K + + RK T V+V N +
Sbjct: 142 GFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGE 201
Query: 125 NTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGM-MVDGK 175
+ +RE+F YG + ++ R +GFV + PD + ELNG +V+GK
Sbjct: 202 DFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGK 261
Query: 176 PMKV 179
P+ V
Sbjct: 262 PLYV 265
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 357
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
+IV KPL + A ++ T ++ ++ + R ++ ++F P GT
Sbjct: 358 RIVGTKPLYVALAQRKEDRKAHLTSQYMQRMA-SMRMQQMGQIFQPGGT 405
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D+ ++EL
Sbjct: 151 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMNDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 175
F YG + ++ R +GF+ + D NK ++++NG ++GK
Sbjct: 211 FDKYGKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVEDMNGTELNGK 259
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + E ++ LF+KYGK + V+ + +GF+ E E+ A++++N
Sbjct: 193 VYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVEDMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G +N +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + + G +++P +
Sbjct: 373 ERKAHLTNQYMQRIAGMRAMPANTI 397
>gi|125544079|gb|EAY90218.1| hypothetical protein OsI_11785 [Oryza sativa Indica Group]
Length = 265
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 24/178 (13%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
++F+GN+ + LFE+ G V +V+ + +GFV M + EE A++
Sbjct: 86 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVE 145
Query: 88 ELNGQIVNEKPLKIEAA-------TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
+ NG I++ + L++ + +SR+ P +V+VGNLS + LF G
Sbjct: 146 QFNGYILDGRSLRVNSGPPPPREQSSRRAPRGEANRVYVGNLSWGVDNAALANLFSGEGE 205
Query: 141 VVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
V+E ++ R +GFV S ++ + L+G +DG+ ++V ++ S+ +R
Sbjct: 206 VLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRVTVAESKPPRR 263
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N S E++R +FEKYG++ V+ + +GFV E+ + A ELN
Sbjct: 194 VYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELN 253
Query: 91 G-QIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G ++V KPL K E S + ++V NL D +R
Sbjct: 254 GKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLR 313
Query: 133 ELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+ F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 314 KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 373
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 24/184 (13%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P G +FI N++ + + F +G ++ C V K Y
Sbjct: 83 RIMWSQRD-PSLRKSGVGNVFIKNLDKTIDNKAMYDTFTAFGNILSCKVAQDETGASKGY 141
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E +E +I+++NG ++N K + + RK T V+V N +
Sbjct: 142 GFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGE 201
Query: 125 NTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGM-MVDGK 175
+ +RE+F YG + ++ R +GFV + PD + ELNG +V+GK
Sbjct: 202 DFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGK 261
Query: 176 PMKV 179
P+ V
Sbjct: 262 PLYV 265
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 357
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
+IV KPL + A ++ T ++ ++ + R ++ ++F P GT
Sbjct: 358 RIVGTKPLYVALAQRKEDRKAHLTSQYMQRMA-SMRMQQMGQIFQPGGT 405
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.066, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.066, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G+ IFI N++P + + F +G ++ C + K +
Sbjct: 114 CRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKTLYETFSVFGNILSCKIANDETGKSKGF 173
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH EN+E R AI +NG ++N + + + S+K + T V+V NL
Sbjct: 174 GFVHFENEEAAREAIDAINGMLLNGQEVYVAPHVSKKDRQSKLDEARANFTNVYVKNLDL 233
Query: 125 NTRAPEVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGKP 176
+ LF PYGT+ + R +GFV ++ D K ++ LN G+
Sbjct: 234 EATEEDFENLFKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALNDTEYKGQT 293
Query: 177 MKV 179
+ V
Sbjct: 294 LYV 296
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 88/180 (48%), Gaps = 21/180 (11%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G ++P S L+ +F G V V ++ Y +V+ + E G+TAI
Sbjct: 42 TASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAI 101
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
++LN + +P +I S++ P+ + +F+ NL + + E F +G ++
Sbjct: 102 EKLNYTAIKGRPCRI--MWSQRDPSMRKKGSGNIFIKNLHPDIDNKTLYETFSVFGNILS 159
Query: 144 CDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
C I + +GFVH ++ + + I +NGM+++G+ + V S+ ++ +DE
Sbjct: 160 CKIANDETGKSKGFGFVHFENEEAAREAIDAINGMLLNGQEVYVAPHVSKKDRQSKLDEA 219
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ + E LF+ YG + + K+ +GFV EN E+ A++ LN
Sbjct: 226 VYVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALN 285
Query: 91 -----GQIV------------NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E + +A+ K +F+ NL D+ +++E
Sbjct: 286 DTEYKGQTLYVGRAQKKYERLQELKKQYQASKLEKLAKYQGINLFIKNLDDSIDDEKLKE 345
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++R +GFV +P + + I E N +V GKP+ V I+ +
Sbjct: 346 EFAPFGTITSARVMRTENGKSKGFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRK 405
Query: 186 VRQR 189
+R
Sbjct: 406 DVRR 409
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 32/177 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N S E++R +FEKYG++ V+ + +GFV E+ + A ELN
Sbjct: 185 VYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACLELN 244
Query: 91 G-QIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G ++V KPL K E S + ++V NL D +R
Sbjct: 245 GKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLR 304
Query: 133 ELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
+ F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 305 KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 361
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 26/185 (14%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P G +FI N++ + + F +G ++ C V K Y
Sbjct: 74 RIMWSQRD-PSLRKSGVGNVFIKNLDKAIDNKAMYDTFSAFGNILSCKVAQDENGASKGY 132
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E +E +I+++NG ++N K + + RK T V+V N +
Sbjct: 133 GFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGE 192
Query: 125 NTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK--CIKELNGM-MVDG 174
+ +R++F YG + ++ R +GFV + PD + C+ ELNG +V+G
Sbjct: 193 DFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACL-ELNGKELVEG 251
Query: 175 KPMKV 179
KP+ V
Sbjct: 252 KPLYV 256
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 289 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 348
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVP 137
+IV KPL + A ++ T ++ ++ + R ++ ++F P
Sbjct: 349 RIVGTKPLYVALAQRKEDRKAHLTSQYMQRMA-SMRMQQMGQIFQP 393
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 175
F +G + ++R+ +GFV + D NK ++E+NG ++GK
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGK 259
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.066, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|428169258|gb|EKX38194.1| hypothetical protein GUITHDRAFT_77389, partial [Guillardia theta
CCMP2712]
Length = 169
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 83/159 (52%), Gaps = 16/159 (10%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKEL 89
++F+GN++P T E + LF+K+GK V+++ YGF+ + + R A++ +
Sbjct: 11 QVFVGNIHPDTKEEEVIELFKKFGKPDRSIVMRSAEGISLGYGFLEFSDASQARKAVEGM 70
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDN-TRAPEVRELFVPYGTVVEC---- 144
N + E+ L+++ A R + + VF+ L ++R +F P G +V+C
Sbjct: 71 NLIVYKERQLRVDFADCRSKSSQFSPIVFIDQLPRTFVDLEKLRSIFSPKGAMVDCHLAK 130
Query: 145 ---DIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
++ R + FV ++ D +ELNG ++G+P++V
Sbjct: 131 GPGNVTRGFAFVEYETHDSAYSAFRELNGYKLEGQPIRV 169
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D+ ++EL
Sbjct: 151 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGK 175
F YG + ++ + +GFV + D NK ++E+NG ++GK
Sbjct: 211 FSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGK 259
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N ++ LF KYGK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SPD K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + + G +++P +
Sbjct: 373 ERKAHLTNQYMQRIAGMRALPANTI 397
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ ++EL
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + RV
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKRV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A R T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKRVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D+ ++EL
Sbjct: 151 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGK 175
F YG + ++ + +GFV + D NK ++E+NG ++GK
Sbjct: 211 FSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGK 259
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N ++ LF KYGK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SPD K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + + G +++P +
Sbjct: 373 ERKAHLTNQYMQRIAGMRALPANTI 397
>gi|268531322|ref|XP_002630787.1| Hypothetical protein CBG02484 [Caenorhabditis briggsae]
Length = 403
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 88/176 (50%), Gaps = 23/176 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++P S + I LF + G V + V+ + Y FV + + A++ +N +
Sbjct: 44 LYVGNLDPSVSEDFIATLFNQIGSVTKTKVIHDGANDPYAFVEFSDHGQASQALQTMNKR 103
Query: 93 IVNEKPLKIEAATS-----RKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 147
+++++ +K+ A K T VFVG+LS ++RE F+P+G V + ++
Sbjct: 104 LLHDREMKVNWAVEPGQQPSKIDTTRHFHVFVGDLSSEVDNQKLREAFIPFGDVSDAKVI 163
Query: 148 RN--------YGFV-HIDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
R+ YGFV + + + I+++NG + + ++ +T ++PG E
Sbjct: 164 RDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWAT----RKPGDQE 215
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 31/170 (18%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
F +F+G+++ + +R F +G V + V+ K YGFV EE AI+
Sbjct: 131 FHVFVGDLSSEVDNQKLREAFIPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIE 190
Query: 88 ELNGQIVNEKPLKIEAATSRKG-------------------PNTPTTKVFVGNLSDNTRA 128
++NGQ + + ++ AT + G + T V+VGN++ N
Sbjct: 191 QMNGQWLGRRTIRTNWATRKPGDQEKPSNYNEKSYDEVYNQTSGDNTSVYVGNIA-NLTE 249
Query: 129 PEVRELFVPYGTVVECDIVRNYGFVHIDSPDIN---KCIKELNGMMVDGK 175
E+R+ F YG + E I + G+ + + N K I E+N V G+
Sbjct: 250 DEIRQAFASYGRISEVRIFKMQGYAFVKFENKNAAAKAITEMNNQDVGGQ 299
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 22/173 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G+ IFI N++ + + F +G ++ C + K YGFV +N+E
Sbjct: 118 PTLRKSGSANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATDSNGQSKGYGFVQYDNEE 177
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEVREL 134
+ AI +LNG ++N+K + + RK TT V+V NLS++T E++++
Sbjct: 178 SAQGAIDKLNGMLMNDKQVYV-GHFLRKQERESTTGMTKFQNVYVKNLSESTTDDELKKV 236
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
F +G + ++R+ +GF++ ++ D K ++ LNG D K V
Sbjct: 237 FGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYV 289
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 89/184 (48%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ + ++ +F ++G + V+++ +GF++ E E+ A++ LN
Sbjct: 219 VYVKNLSESTTDDELKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLN 278
Query: 91 GQIVNEKPLKIEAATSR-------KGPNTPTTK----------VFVGNLSDNTRAPEVRE 133
G+ ++K + A + K T K ++V NL D +++E
Sbjct: 279 GKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKE 338
Query: 134 LFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSR 185
LF +GT+ C ++R+ GFV S + ++ + E+NG M+ KP+ V ++ +
Sbjct: 339 LFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRK 398
Query: 186 VRQR 189
+R
Sbjct: 399 EERR 402
Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCI 164
+T ++VG+L N ++ +LF G VV + R+ YG+V+ +P D ++ +
Sbjct: 37 STSLYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAM 96
Query: 165 KELNGMMVDGKPMKVQIS 182
+ LN V+GK ++V S
Sbjct: 97 EMLNFTPVNGKSIRVMYS 114
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 82 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 141
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 142 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKEL 201
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 202 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKV 261
Query: 187 RQR 189
++
Sbjct: 262 ERQ 264
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 184 VYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 243
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 244 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 303
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 304 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 363
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 364 ERKAHLTNQYMQRVAGMRALPANAI 388
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 87 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 146
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 147 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 206
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 207 FSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 266
Query: 187 RQR 189
++
Sbjct: 267 ERQ 269
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 97/205 (47%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 189 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMN 248
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 249 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 308
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ +++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 309 EFSPFGSITRAEVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 368
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 369 ERKAHLTNQYMQRVAGMRALPANAI 393
Score = 43.9 bits (102), Expect = 0.037, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 275 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 316
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
+V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 317 TRAEVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 368
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 104 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 163
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 164 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 223
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 224 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 283
Query: 187 RQR 189
++
Sbjct: 284 ERQ 286
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 206 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 265
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 266 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 325
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 326 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 385
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 386 ERKAHLTNQYMQRVAGMRALPANAI 410
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 292 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 333
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 334 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 385
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++E+
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEI 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
F YG + ++ + +GFV + D + + E+NG ++GK + V
Sbjct: 211 FCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 263
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 24/134 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ +F KYG + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 312
Query: 134 LFVPYGTVVECDIV 147
F P+GT+ ++
Sbjct: 313 EFSPFGTITSAKVM 326
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 25/187 (13%)
Query: 24 CRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHME 77
C P G +F+ +++ + + LF +G ++ C VV K +GFVH E
Sbjct: 95 CHRDPSLRRSGVGNVFVNHLDASIDNKELYDLFAGFGTILSCKVVSDENGPKGHGFVHFE 154
Query: 78 NDEEGRTAIKELNGQIVNEKPLKI-------EAATSRKGPNTPTTKVFVGNLSDNTRAPE 130
E AIKE+NG +V E+ + + + R+ T V+V N +D T
Sbjct: 155 TREAADKAIKEMNGSLVKERKVFVGQFKRPNQREEERRAKMEQFTNVYVKNFADGTTDEY 214
Query: 131 VRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQIS 182
+ E+F YG + I+ + +GF+ + D + I+E+NG G+ +I
Sbjct: 215 LLEIFSQYGPLSSVKIMTDDSGKSKGFGFIRFECHADAKRAIEEVNGKQFGGR----KIY 270
Query: 183 TSRVRQR 189
SR +++
Sbjct: 271 VSRAQKK 277
Score = 65.9 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 27/166 (16%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEN 78
MPGF S +++G+++P + ++ F G ++ V ++ YG+V+
Sbjct: 13 MPGFPSA---SLYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHR 69
Query: 79 DEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
E+ A+ +N +++ KP++I + + R G VFV +L + E+ +
Sbjct: 70 PEDAGHALNTMNFDVLHGKPVRIMWCHRDPSLRRSG----VGNVFVNHLDASIDNKELYD 125
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 172
LF +GT++ C +V + +GFVH ++ + +K IKE+NG +V
Sbjct: 126 LFAGFGTILSCKVVSDENGPKGHGFVHFETREAADKAIKEMNGSLV 171
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/200 (21%), Positives = 90/200 (45%), Gaps = 31/200 (15%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N GT+ E + +F +YG + ++ K +GF+ E + + AI+E+N
Sbjct: 201 VYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIRFECHADAKRAIEEVN 260
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTT-----------------KVFVGNLSDNTRAPEVRE 133
G+ + + + A +K +FV NL+++T +R+
Sbjct: 261 GKQFGGRKIYVSRAQKKKEREEELQQKLEEIKQNRIAKYHGMSLFVKNLAESTDDEHLRK 320
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
+F P+GTV ++ + +GFV S + K ++E++G M+ +P+ V + +
Sbjct: 321 IFAPFGTVTSAKVIVKGGRRKGFGFVSFSSREEAKKAVEEMHGKMLSARPLYVSYARYKQ 380
Query: 187 RQRPGVDEVVIGQKSVPVQA 206
+R +K+ P ++
Sbjct: 381 ERRAYFASYYGKKKASPAKS 400
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|427789733|gb|JAA60318.1| Putative rox8 [Rhipicephalus pulchellus]
Length = 406
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 84/168 (50%), Gaps = 22/168 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ + EL+ +F + G+V C ++ Y FV + + +A+ +N +
Sbjct: 15 LYVGNLDTAVTEELLVAVFGQMGQVKGCKIIHEPGNDPYCFVEFSDHQSAASALLAMNKR 74
Query: 93 IVNEKPLKIEAATSRKGPNTP---TTK---VFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ K +K+ ATS NTP T+K +FVG+LS ++R+ F P+G + +C +
Sbjct: 75 LCFGKEMKVNWATSPG--NTPKLDTSKHHHIFVGDLSPEIETTQLRDAFAPFGDISDCRV 132
Query: 147 VRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
VR+ YGFV + D I +NG + + ++ +T +
Sbjct: 133 VRDPQTLKSKGYGFVSFVKKADAENAIGTMNGQWLGSRAIRTNWATRK 180
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 33/163 (20%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + IF+G+++P +R F +G + +C VV K YGFV
Sbjct: 91 NTPKLDTSKHHHIFVGDLSPEIETTQLRDAFAPFGDISDCRVVRDPQTLKSKGYGFVSFV 150
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN--------TPTTK------------- 116
+ AI +NGQ + + ++ AT + N T +TK
Sbjct: 151 KKADAENAIGTMNGQWLGSRAIRTNWATRKPPANRTQAEVDITTSTKPLTFDEVYNQSSP 210
Query: 117 ----VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI 155
V+ G ++ +++ F YG + E + ++ G+ I
Sbjct: 211 TNCTVYCGGITQGLSEELMQKTFSSYGAIQEIRVFKDKGYAFI 253
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 22/174 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 82 PSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDEKGNSKGYGFVHFETEE 141
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
T+I+++NG ++N K + + RK T V+V N D ++E
Sbjct: 142 SANTSIEKVNGMLLNAKKVFVGRFIPRKEREKELGEKAKLFTNVYVKNFGDELTDESLKE 201
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPDINK-CIKELNGM-MVDGKPMKV 179
+F YGT+ ++ R +GFV ++P+ + ++ELNG + DGK + V
Sbjct: 202 MFEKYGTITSHRVMIKENKSRGFGFVAFENPESAEVAVQELNGKELGDGKVLYV 255
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 41/184 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N + E ++ +FEKYG + V+ + +GFV EN E A++ELNG
Sbjct: 185 VYVKNFGDELTDESLKEMFEKYGTITSHRVMIKENKSRGFGFVAFENPESAEVAVQELNG 244
Query: 92 --------------QIVNEKP---------LKIEAATSRKGPNTPTTKVFVGNLSDNTRA 128
Q NE+ LK+E T +G N ++V NL D+
Sbjct: 245 KELGDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVN-----LYVKNLDDSIDD 299
Query: 129 PEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQI 181
+R+ F P+GT+ ++ + +GFV + + K + E+NG +V KP+ V +
Sbjct: 300 ERLRKEFSPFGTITSAKVMLEEGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVAL 359
Query: 182 STSR 185
+ +
Sbjct: 360 AQRK 363
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 25/143 (17%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
RF+Q ++ +++RY +++ N++ E +R F +G +
Sbjct: 271 RFEQLKMERLTRYQG------------------VNLYVKNLDDSIDDERLRKEFSPFGTI 312
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK 116
V+ K +GFV EE A+ E+NG+IV KPL + A ++
Sbjct: 313 TSAKVMLEEGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLAS 372
Query: 117 VFVGNLSDNTRAPEVRELFVPYG 139
++ ++ N R + ++F P G
Sbjct: 373 QYMQRMA-NMRMQHMGQIFQPGG 394
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.073, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.073, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 39/223 (17%)
Query: 10 VKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 69
V V + N Q P F++V ++ N + + E + LF YG + V+K
Sbjct: 163 VYVGLFVNRQERAQVDGSPKFTNV-----YVKNFSETYTDEDLEQLFSTYGTITSAVVMK 217
Query: 70 N-------YGFVHMENDEEGRTAIKELNGQIVN------------------EKPLKIEAA 104
+ +GFV+ E+ + A++ LNG VN E + E
Sbjct: 218 DTDGKSRCFGFVNFESPDSAVAAVERLNGTTVNDDKVLYVGRAQRKAEREAELKARFELE 277
Query: 105 TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS 157
RK T ++V NL N +++ELF +GT+ C ++ + YGFV +
Sbjct: 278 RIRKYEKYHGTNLYVKNLDYNINDDKLKELFSEFGTITSCKVMLEPNGRSKGYGFVAFSA 337
Query: 158 P-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQ 199
P + N+ + E+NG M+ +P+ V ++ R +R + E Q
Sbjct: 338 PRNANRALHEMNGKMIGRRPLYVAVA-QRKEERKALLEAQFSQ 379
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 20/166 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G V+ V K YGFV +N+E
Sbjct: 85 PSIRKSGYANVFIKNLDISIDNKTLHDTFAAFGFVLSSKVAVDSIGQSKGYGFVQFDNEE 144
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKG----PNTPT-TKVFVGNLSDNTRAPEVRELF 135
+ AIKELNG ++N+K + + +R+ +P T V+V N S+ ++ +LF
Sbjct: 145 SAQNAIKELNGMLINDKKVYVGLFVNRQERAQVDGSPKFTNVYVKNFSETYTDEDLEQLF 204
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVD 173
YGT+ ++++ +GFV+ +SPD ++ LNG V+
Sbjct: 205 STYGTITSAVVMKDTDGKSRCFGFVNFESPDSAVAAVERLNGTTVN 250
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 82/178 (46%), Gaps = 21/178 (11%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAI 86
G +++G++ + LF + G + V ++ Y +V+ N ++ A+
Sbjct: 4 GNASLYVGDLERNVDEAQLFQLFARVGPIFSIRVCRDETNRSLGYAYVNFVNPQDAANAM 63
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
+ LN +N K +++ S + P+ + VF+ NL + + + F +G V+
Sbjct: 64 EHLNFTPLNGKSIRV--MFSNRDPSIRKSGYANVFIKNLDISIDNKTLHDTFAAFGFVLS 121
Query: 144 CDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVD 193
+ + YGFV D+ + IKELNGM+++ K + V + +R ++R VD
Sbjct: 122 SKVAVDSIGQSKGYGFVQFDNEESAQNAIKELNGMLINDKKVYVGLFVNR-QERAQVD 178
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.068, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.076, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|268578407|ref|XP_002644186.1| Hypothetical protein CBG17168 [Caenorhabditis briggsae]
Length = 244
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 29/199 (14%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
F +F+G+++ S EL++ F+K+G+V E V+ K YGFV N + AI
Sbjct: 5 FHVFVGDLSKDVSNELLKSTFQKFGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAENAIS 64
Query: 88 ELNGQIVNEKPLKIEAATSR---------------KGPNTPTTKVFVGNLSDNTRAPEVR 132
+NG+ + ++ ++ A + T V+VGN+S T ++R
Sbjct: 65 GMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISPQTTDVDLR 124
Query: 133 ELFVPYGTVVECDIVRN--YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQR 189
+ F YG + E + + Y FV + + K I E+NG + G +V+ S R +
Sbjct: 125 DSFSTYGDIAEVRVFKTQRYAFVRYEKKECATKAIMEMNGKELAGN--QVRCSWGRTQAV 182
Query: 190 PGVD-EVVIGQKSVPVQAL 207
++ +++ P QAL
Sbjct: 183 IEIENHIIVFSDLQPNQAL 201
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.074, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.076, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 21/181 (11%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P G IFI N++ + + F +G ++ C V K Y
Sbjct: 96 RIMFSHRD-PSLRKSGAANIFIKNLDKAIDNKALHDTFSAFGGILSCKVATDSSGQSKGY 154
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNT 126
GFV E +E ++AI+++NG ++N+K + + R+ G + V+V NL +NT
Sbjct: 155 GFVQFEKEESAQSAIEKVNGMLLNDKQVFVGPFVRRQERDLSGGVSKFNNVYVKNLGENT 214
Query: 127 RAPEVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMK 178
E++++F YG + ++R+ +GFV+ + + D K ++ LNG D K
Sbjct: 215 TDDELKKVFGAYGPISSAVVMRDNEGKSKCFGFVNFELADDAAKAVEALNGKKQDEKEWY 274
Query: 179 V 179
V
Sbjct: 275 V 275
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ T+ + ++ +F YG + V+++ +GFV+ E ++ A++ LN
Sbjct: 205 VYVKNLGENTTDDELKKVFGAYGPISSAVVMRDNEGKSKCFGFVNFELADDAAKAVEALN 264
Query: 91 GQIVNEKPLKI---------EAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +EK + EA K +++ ++ NL D ++RE
Sbjct: 265 GKKQDEKEWYVGRAQKKSEREAELRAKFEQERKSRIEKYQGVNLYLKNLDDAVDDEKLRE 324
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF YGT+ C ++ R GFV +P + + + E+N MV KP+ V ++ +
Sbjct: 325 LFAEYGTITSCKVMKDPQGQSRGSGFVAFSTPEEATRAVTEMNTKMVGSKPLYVALAQRK 384
Query: 186 VRQR 189
+R
Sbjct: 385 EERR 388
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCI 164
+T V+VG+L N ++ E+F G VV + R+ Y +V+ S D + +
Sbjct: 23 STSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQDATRAL 82
Query: 165 KELNGMMVDGKPMKVQIS 182
+ LN V+GKP+++ S
Sbjct: 83 ELLNFTPVNGKPIRIMFS 100
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AIK++NG ++N++ + + SRK T V++ N ++ ++EL
Sbjct: 151 AERAIKKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|196009388|ref|XP_002114559.1| hypothetical protein TRIADDRAFT_28438 [Trichoplax adhaerens]
gi|190582621|gb|EDV22693.1| hypothetical protein TRIADDRAFT_28438 [Trichoplax adhaerens]
Length = 292
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 35/178 (19%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK 87
+ IF+G+++P L+R F ++G V + VVK+ YGFV + E A++
Sbjct: 91 YHIFVGDLSPDIDTTLLRSAFNQFGHVSDARVVKDSATGKPRGYGFVSYQFKHEAENAMQ 150
Query: 88 ELNGQIVNEKPLKIEAATSRKGPNT-------PTTK-----------------VFVGNLS 123
+NG + + ++ AT + G T +TK V+VGNLS
Sbjct: 151 SMNGAWLGGRNIRTNWATRKPGATTNRQNSDSSSTKSLNYDEIYLQTAVYNCTVYVGNLS 210
Query: 124 DNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDSPD-INKCIKELNGMMVDGKPMK 178
T +R +F+P+G + + + +NY F+ S D I ++G V+G +K
Sbjct: 211 AGTTEETLRRIFIPFGPIADIRVFPDKNYAFIRYMSHDHATNAIVVIHGTAVEGSQVK 268
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 20/170 (11%)
Query: 39 FIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEEGRTAIKELNGQ 92
+IGN++ T+ + I LF K+G + C ++ YGFV A+ +NG
Sbjct: 8 YIGNLDRQTTEQSIGELFAKFGAIKRCKLITEHGGNDPYGFVEYAEKNSAARALDAMNGY 67
Query: 93 IVNEKPLKIEAAT-SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---- 147
+ +K+ AT S +T +FVG+LS + +R F +G V + +V
Sbjct: 68 SFGSRAIKVNWATNSSMRKDTNHYHIFVGDLSPDIDTTLLRSAFNQFGHVSDARVVKDSA 127
Query: 148 ----RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
R YGFV + ++ +NG + G+ ++ +T ++PG
Sbjct: 128 TGKPRGYGFVSYQFKHEAENAMQSMNGAWLGGRNIRTNWAT----RKPGA 173
>gi|256085697|ref|XP_002579050.1| rna binding motif protein 4lark [Schistosoma mansoni]
gi|353228729|emb|CCD74900.1| putative rna binding motif protein 4,lark [Schistosoma mansoni]
Length = 244
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+GN+NP + +R FE +GKV ECDVV NYGFVHME + E AI+ L I++
Sbjct: 3 KIFVGNLNPESKPSDLRKKFEAFGKVTECDVVNNYGFVHMEKESEAEAAIEGLQNAILDG 62
Query: 97 KPLKIEAATSRKG 109
+ +E + ++G
Sbjct: 63 VKINVERSHGKRG 75
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 174
K+FVGNL+ ++ ++R+ F +G V ECD+V NYGFVH++ + I+ L ++DG
Sbjct: 3 KIFVGNLNPESKPSDLRKKFEAFGKVTECDVVNNYGFVHMEKESEAEAAIEGLQNAILDG 62
Query: 175 KPMKVQISTSRVRQRPG 191
+ V+ S + PG
Sbjct: 63 VKINVERSHGKRGGGPG 79
>gi|225441084|ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
vinifera]
gi|297740018|emb|CBI30200.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +F+ N++ ++ +F+K+G ++ C VV K YGFV E++E
Sbjct: 92 PDARRSGIGNVFVKNLSDSIDNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEE 151
Query: 81 EGRTAIKELNGQIVNEKPL---KIEAATSR--KGPNTPTTKVFVGNLSDNTRAPEVRELF 135
AI++LNG I++ K + K T R P+ T +++ NL + +RE F
Sbjct: 152 YANAAIEKLNGFIIDGKQIYAGKFVRKTDRVLPNPDAKYTNLYIKNLDPDVTEEALREKF 211
Query: 136 VPYGTVV-------ECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
+G + E + R +GFV+ +SP D + ++ LNG+ + K + V
Sbjct: 212 FEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYV 263
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N++P + E +R F ++GK+ + K+ +GFV+ E+ E+ + A++ LN
Sbjct: 193 LYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRALEALN 252
Query: 91 GQIVNEKPLKIEAATSR------------KGPNTPTTK-----VFVGNLSDNTRAPEVRE 133
G + K L + A + + N K V+V N+ DN ++RE
Sbjct: 253 GLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKNIDDNVNDDDLRE 312
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F G + ++R+ +GFV +PD +K + +G M KP+ V I+ +
Sbjct: 313 HFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLYVAIAQRK 372
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 124 CRIMWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDENANSKGY 183
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + + +K + T ++V N+
Sbjct: 184 GFVHYETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEEMKANFTNIYVKNIDS 243
Query: 125 NTRAPEVRELFVPYGTVVECDIV--------RNYGFV-HIDSPDINKCIKELNGMMVDGK 175
T E RELF YG + + R +GFV +I D K ++ELN G+
Sbjct: 244 ETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAYKAVEELNDSDFKGQ 303
Query: 176 PMKV 179
+ V
Sbjct: 304 KLYV 307
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 77/157 (49%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ +G A++EL
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ +P +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 115 NYTLIKGRPCRI--MWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKV 172
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N+ IK +NGM+++ K
Sbjct: 173 AQDENANSKGYGFVHYETAEAANQAIKNVNGMLLNEK 209
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 25/137 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
I++ N++ T+ R LFEKYG + + + +GFV+ E+ A++EL
Sbjct: 236 IYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAYKAVEEL 295
Query: 90 N-----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N GQ + E+ L+ EAA K ++V NL+D E+R
Sbjct: 296 NDSDFKGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYTGVNLYVKNLADEIDDDELR 355
Query: 133 ELFVPYGTVVECDIVRN 149
++F PYG + ++R+
Sbjct: 356 KVFEPYGAITSAKVMRD 372
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 45/205 (21%), Positives = 95/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVDEVVI----GQKSVPVQAL 207
++ + + G +++P A+
Sbjct: 373 ERKAHLTNQYMQREAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 130 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGY 189
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T V+V N++
Sbjct: 190 GFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIAP 249
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKP 176
+ + R+LF +G V + R+ +GFV+ + + K ++ELNG G+
Sbjct: 250 DVTDEDFRQLFEKFGDVTSSSLARDQEGKTRGFGFVNFTTHEAAFKAVEELNGKDFRGQD 309
Query: 177 MKV 179
+ V
Sbjct: 310 LYV 312
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 74/222 (33%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ P + E R LFEK+G V + ++ +GFV+ E A++ELN
Sbjct: 242 VYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTRGFGFVNFTTHEAAFKAVEELN 301
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K +++ NL D+ ++R+
Sbjct: 302 GKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQ 361
Query: 134 LFVPYGTVVECDIVRN-------------------------------------------- 149
+F +G + ++R+
Sbjct: 362 MFAEFGPITSAKVMRDVPQEGEEEAKDQEKDKENQKEGEKEGESAEGAEKKTEKKSDKKL 421
Query: 150 -----YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+GFV +P D K + E+N M++ KP+ V ++ +
Sbjct: 422 GKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRK 463
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 108 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 167
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 168 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKEL 227
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 228 FSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKV 287
Query: 187 RQR 189
++
Sbjct: 288 ERQ 290
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 90/191 (47%), Gaps = 35/191 (18%)
Query: 52 IRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVN--------- 95
++ LF ++GK + V+ K +GFV E E+ A++E+NG+ ++
Sbjct: 224 LKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA 283
Query: 96 EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRELFVPYGTVVECDIV 147
+K ++ +A RK ++ ++ NL D ++R F P+G++ ++
Sbjct: 284 QKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVM 343
Query: 148 ------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVD----EVV 196
+ +GFV SP+ K + E+NG +V KP+ V ++ + ++ + + V
Sbjct: 344 LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 403
Query: 197 IGQKSVPVQAL 207
G +++P A+
Sbjct: 404 AGMRALPASAI 414
Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
++I N++ E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 313 LYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 372
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 373 RIVGSKPLYVALAQRKE 389
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E +
Sbjct: 97 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 156
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D+ ++EL
Sbjct: 157 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEL 216
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F YG + ++ + +GFV + D NK ++E+NG ++GK + V + +V
Sbjct: 217 FSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKV 276
Query: 187 RQR 189
++
Sbjct: 277 ERQ 279
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF KYGK + V+ K +GFV E E+ A++E+N
Sbjct: 199 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMN 258
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K ++ +A R+ ++ ++ NL D ++R+
Sbjct: 259 GKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 318
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 319 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 378
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + + G +++P +
Sbjct: 379 ERKAHLTNQYMQRIAGMRALPANTI 403
Score = 43.9 bits (102), Expect = 0.037, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
RF+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 285 RFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 326
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 327 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 378
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N++ + + F +G ++ C V K Y
Sbjct: 132 CRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGY 191
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T V+V N++
Sbjct: 192 GFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINH 251
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E RELF +G V + R+ +GFV+ + + K + +LNG G+
Sbjct: 252 EVTDDEFRELFEKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAKAVDDLNGKDFRGQD 311
Query: 177 MKV 179
+ V
Sbjct: 312 LYV 314
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 73/221 (33%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+N + + R LFEK+G+V + ++ +GFV+ E A+ +LN
Sbjct: 244 VYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAKAVDDLN 303
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K +++ NL D+ ++R
Sbjct: 304 GKDFRGQDLYVGRAQKKHEREEELRRSYEAARLEKANKYQGVNLYIKNLGDDVDDEKLRA 363
Query: 134 LFVPYGTVVECDIVRN-------------------------------------------- 149
+F YG + ++R+
Sbjct: 364 MFSEYGPITSAKVMRDSLIEGEEKDEKDKENKKEGETKEEEEKEGSAEKKTEKKGDRKLG 423
Query: 150 ----YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+GFV +P D K + E+N MVDGKP+ V ++ +
Sbjct: 424 KSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRK 464
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 90/191 (47%), Gaps = 35/191 (18%)
Query: 52 IRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVN--------- 95
++ LF ++GK + V+ K +GFV E E+ A++E+NG+ ++
Sbjct: 207 LKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA 266
Query: 96 EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRELFVPYGTVVECDIV 147
+K ++ +A RK ++ ++ NL D ++R F P+G++ ++
Sbjct: 267 QKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVM 326
Query: 148 ------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVD----EVV 196
+ +GFV SP+ K + E+NG +V KP+ V ++ + ++ + + V
Sbjct: 327 LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Query: 197 IGQKSVPVQAL 207
G +++P A+
Sbjct: 387 AGMRALPASAI 397
Score = 42.7 bits (99), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
++I N++ E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVGSKPLYVALAQRKE 372
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|71018821|ref|XP_759641.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
gi|74701642|sp|Q4P8R9.1|PABP_USTMA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46099399|gb|EAK84632.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
Length = 651
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
++ NV+P + + LF K+GK+ C + K +GFV+ E+ E + A+ EL+
Sbjct: 229 VYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELH 288
Query: 91 -----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E+ L+ EAA + K +++ N+ ++ +RE
Sbjct: 289 DSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLRE 348
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+G + C I+ R +GFV +P + NK + E+NG M+D +P+ V ++ +
Sbjct: 349 EFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRK 408
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 26/174 (14%)
Query: 21 NISCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN----- 70
N CR M P G IFI N++ G + + F +G ++ C V N
Sbjct: 115 NRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETGSL 174
Query: 71 -YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNL 122
YGFVH E E AIK +NG ++N+K + + RK T V+ N+
Sbjct: 175 GYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNV 234
Query: 123 SDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELN 168
E +LF +G + C + R+ +GFV+ D + K + EL+
Sbjct: 235 DPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELH 288
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + + F +G ++ C VV K YGFVH E EE
Sbjct: 91 PSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEE 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG +N++ + + SR+ T V++ NL ++ +++L
Sbjct: 151 AERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 41/186 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N+ E ++ LF ++G + V+ K +GFV E E+ R A+ E+N
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMN 252
Query: 91 GQIVNEKPL---------------------------KIEAATSRKGPNTPTTKVFVGNLS 123
G+ +N K + KIE + ++V NL
Sbjct: 253 GKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLD 312
Query: 124 DNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKP 176
D +R+ F P+GT+ + + +GFV SP + K + E+NG +V KP
Sbjct: 313 DGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 372
Query: 177 MKVQIS 182
+ V ++
Sbjct: 373 LYVALA 378
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V K +GFV + EE A+ E+NG
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNG 365
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 129
+IV KPL + A ++ + ++ ++ + P
Sbjct: 366 RIVATKPLYVALAQRKEERQAHLSNQYMQRMASTSAVP 403
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 45/205 (21%), Positives = 95/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVDEVVI----GQKSVPVQAL 207
++ + + G +++P A+
Sbjct: 373 ERKAHLTNQYMQREAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.074, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.074, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.074, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.074, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 90/200 (45%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++P E LF K+G + + K+ +GFV+ E+ E+ A++ L+
Sbjct: 230 IYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVETLH 289
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+N + L + E A K +++ NL D+ ++R
Sbjct: 290 DTEINGRKLYVARAQKKSEREDELRKSYENAKQEKLSKYQGVNLYIKNLEDDIDDEKLRA 349
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ C ++R+ +GFV SPD K + E+N M+ KP+ V ++ R
Sbjct: 350 EFEPFGTITSCKVMRDEKNTSKGFGFVCFSSPDEATKAVSEMNNKMIGSKPLYVSLAQRR 409
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R ++ + + + +Q
Sbjct: 410 EVRRQQLETQIAQRNQIRMQ 429
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 27/186 (14%)
Query: 21 NISCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------- 68
N +CR M P G IFI N++ + + F +G V+ C V
Sbjct: 115 NRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNS 174
Query: 69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGN 121
K YGFVH E E AIK +NG ++N+K + + RK + T ++V N
Sbjct: 175 KGYGFVHYETAEAAENAIKSVNGMLLNDKKVFVGHHIPRKERQSKIDEMKAQYTNIYVKN 234
Query: 122 LSDNTRAPEVRELFVPYGTVVECDI-------VRNYGFVHIDSPD-INKCIKELNGMMVD 173
L ELF +G + + R +GFV+ +S + ++ L+ ++
Sbjct: 235 LDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVETLHDTEIN 294
Query: 174 GKPMKV 179
G+ + V
Sbjct: 295 GRKLYV 300
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ +F G V V ++ Y +V+ N +G A+ +L
Sbjct: 49 LYVGELDPSVTEAMLFEVFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQL 108
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ + +I S++ P T +F+ NL + + + F +G V+ C +
Sbjct: 109 NYSLIKNRACRI--MWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKV 166
Query: 147 V-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
+ YGFVH ++ + + IK +NGM+++ K + V R ++ +DE+
Sbjct: 167 ATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVFVGHHIPRKERQSKIDEM 223
>gi|50409715|ref|XP_456900.1| DEHA2A13134p [Debaryomyces hansenii CBS767]
gi|49652564|emb|CAG84877.1| DEHA2A13134p [Debaryomyces hansenii CBS767]
Length = 447
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+F+G ++ E +R FE G V+ V+ + YG+V ++ A++E
Sbjct: 200 LFVGRLSWSIDDEWLRREFEPVGGVISARVIMERSTGKSRGYGYVDFDSKSAAEKALQEY 259
Query: 90 NGQIVNEKPLKIEAATSR---KGPNT------------PTTKVFVGNLSDNTRAPEVREL 134
G+ ++ +P+ ++ +T + PNT P+ +FVGNLS N +
Sbjct: 260 QGKELDGRPINLDMSTGKPHASNPNTDRAKQFGDVPSAPSDTLFVGNLSFNAERDSLFNT 319
Query: 135 FVPYGTVVECDI--------VRNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSR 185
F YGTVV C I + +G+V S D K ++ LNG +DG+ ++ ST R
Sbjct: 320 FGEYGTVVSCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYLDGRACRLDFSTPR 379
Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+F+GN++ + + F +YG VV C + K +G+V + +E + A++ L
Sbjct: 302 LFVGNLSFNAERDSLFNTFGEYGTVVSCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 361
Query: 90 NGQIVNEKPLKIEAATSRKGPNTP 113
NG+ ++ + +++ +T R N P
Sbjct: 362 NGEYLDGRACRLDFSTPRDNSNAP 385
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ + +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ + +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 18 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEA 77
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++E+
Sbjct: 78 AERAIEKMNGMLLNDRKVFVGRFKSRKERGAEMGARAKEFTNVYIKNFGEDMDDEKLKEI 137
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
F YG + ++ + +GFV + D + + E+NG ++GK + V
Sbjct: 138 FSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 190
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 31/171 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ +F KYG + V+ K +GFV E E+ + A+ E+N
Sbjct: 120 VYIKNFGEDMDDEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMN 179
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 180 GKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 239
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPM 177
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+
Sbjct: 240 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 290
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ S E +R F ++G V C ++ K +GFV E E A+++L+
Sbjct: 217 VYVKNLSENLSDEKLREKFAEHGAVTSCVIMRDEEGKSKGFGFVCYEEPEGAAAAVEKLD 276
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G +EK K + + +++ NL D T ++RE
Sbjct: 277 GYTEDEKTWVVCRAQKKAEREAELKAKFDQERRERMEKMAGANLYIKNLEDGTDDEKLRE 336
Query: 134 LFVPYGTVVECDIVRNY-------GFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
LF +GT+ C ++R+ FV SPD + + E+NG MV KP+ V ++ +
Sbjct: 337 LFKEFGTITSCRVMRDASGVSRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQRK 396
Query: 186 VRQR 189
+R
Sbjct: 397 EERR 400
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 21/168 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F ++G + V K YGFV E E
Sbjct: 117 PAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAKVAMDGQGNSKGYGFVQFETQE 176
Query: 81 EGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
+ AI +NG +N+K P + A S G V+V NLS+N ++RE F
Sbjct: 177 AAQAAIDNVNGMELNDKQVYVGPFQRRAERSNTG-EAKFNNVYVKNLSENLSDEKLREKF 235
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
+G V C I+R+ +GFV + P+ +++L+G D K
Sbjct: 236 AEHGAVTSCVIMRDEEGKSKGFGFVCYEEPEGAAAAVEKLDGYTEDEK 283
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 25/168 (14%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRT 84
GT +++G++ + + F G VV V ++ Y +V+ ++ +
Sbjct: 34 AGTSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSPNDAAH 93
Query: 85 AIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
AI LN Q++N KP+++ + A R G +F+ NL + + F +G
Sbjct: 94 AIDVLNFQVINGKPIRVLYSQRDPAVRRSG----VGNIFIKNLDKAIDNKALLDTFAQFG 149
Query: 140 TVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 179
T+ + + YGFV ++ + + I +NGM ++ K + V
Sbjct: 150 TITSAKVAMDGQGNSKGYGFVQFETQEAAQAAIDNVNGMELNDKQVYV 197
>gi|115520925|gb|ABJ08845.1| putative polyadenylate-binding protein 1 [Squalus acanthias]
Length = 212
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 28/189 (14%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 23 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEA 82
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ ++E+
Sbjct: 83 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEDMDDERLKEI 142
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK-------PMKV 179
F +G + ++ + +GFV + D K + E+NG ++G+ P KV
Sbjct: 143 FNKFGAFLSVKVMTDDSGRSKGFGFVSFEKHEDAQKAVDEMNGKEINGRQVYVGPCPXKV 202
Query: 180 QISTSRVRQ 188
+ T R+
Sbjct: 203 ERQTELKRK 211
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ + +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 88/184 (47%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ T+ E +R +F +G + V+++ +GFV+ EN ++ A++ LN
Sbjct: 206 VYVKNLAEATTDEDLRKVFAGFGPISSAVVMRDADGKSKCFGFVNFENVDDAANAVENLN 265
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+++NEK K E K +++ N+ D+ ++RE
Sbjct: 266 GKLINEKEWYVGRAQKKSEREAELKAKFEQVRKEKEEKFQGVNLYLKNIDDSIDDEKLRE 325
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF +GTV C ++++ GFV +P + + + ++NG MV KP+ V ++ +
Sbjct: 326 LFAVFGTVTSCKVMKSPQGQSMGSGFVTFSAPEEAMQAVNDMNGKMVGSKPLYVALAQRK 385
Query: 186 VRQR 189
+R
Sbjct: 386 EERR 389
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 85/171 (49%), Gaps = 19/171 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N+ + + F +G ++ C VV K YGFV E +E
Sbjct: 106 PSIRKSGAANIFIKNLEKSIDNKALHDTFSAFGTILSCRVVMDDAGNSKGYGFVQFEKEE 165
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK----VFVGNLSDNTRAPEVRELFV 136
+ AI+++NG ++N++ + + ++ + ++K V+V NL++ T ++R++F
Sbjct: 166 SAQIAIEKVNGMLINDRQVSVAPFIRKQERDMASSKNFNNVYVKNLAEATTDEDLRKVFA 225
Query: 137 PYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
+G + ++R+ +GFV+ ++ D ++ LNG +++ K V
Sbjct: 226 GFGPISSAVVMRDADGKSKCFGFVNFENVDDAANAVENLNGKLINEKEWYV 276
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 81/161 (50%), Gaps = 21/161 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++P S + +F + G+VV V ++ Y +V+ ++ A++ L
Sbjct: 28 LYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSLGYAYVNYGTHQDASQALELL 87
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N +V KP++I S + P+ + +F+ NL + + + F +GT++ C +
Sbjct: 88 NFTLVKGKPIRI--MYSHRDPSIRKSGAANIFIKNLEKSIDNKALHDTFSAFGTILSCRV 145
Query: 147 V-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 179
V + YGFV + + + I+++NGM+++ + + V
Sbjct: 146 VMDDAGNSKGYGFVQFEKEESAQIAIEKVNGMLINDRQVSV 186
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G +FI N++ + + F +G ++ C VV + YGFVH E E
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+ +NG ++N++ + + SR+ T V++ N ++ +RE+
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ R +GFV+ + + K + E+NG V+G+ + V + R+
Sbjct: 211 FSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + +R +F +G + V+ + +GFV+ N EE + A+ E+N
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ VN +K ++ ++ RK ++ +V NL D +R+
Sbjct: 253 GKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F+PYGT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G + +R F YG + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 129
+IV+ KPL + A ++ T ++ L+ P
Sbjct: 356 RIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRAMP 393
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 20 PSLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 79
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 80 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKEL 139
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 140 FSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKV 199
Query: 187 RQR 189
++
Sbjct: 200 ERQ 202
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 90/191 (47%), Gaps = 35/191 (18%)
Query: 52 IRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVN--------- 95
++ LF ++GK + V+ K +GFV E E+ A++E+NG+ ++
Sbjct: 136 LKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA 195
Query: 96 EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRELFVPYGTVVECDIV 147
+K ++ +A RK ++ ++ NL D ++R F P+G++ ++
Sbjct: 196 QKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVM 255
Query: 148 ------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVD----EVV 196
+ +GFV SP+ K + E+NG +V KP+ V ++ + ++ + + V
Sbjct: 256 LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 315
Query: 197 IGQKSVPVQAL 207
G +++P A+
Sbjct: 316 AGMRALPASAI 326
Score = 42.7 bits (99), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
++I N++ E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 225 LYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 284
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 285 RIVGSKPLYVALAQRKE 301
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 113 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 172
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 173 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKEL 232
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 233 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKV 292
Query: 187 RQR 189
++
Sbjct: 293 ERQ 295
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 45/205 (21%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 215 VYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 274
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 275 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 334
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 335 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 394
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 395 ERKAHLTNQYMQRVAGMRALPANAI 419
Score = 43.1 bits (100), Expect = 0.074, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 301 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 342
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 343 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 394
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 27/184 (14%)
Query: 23 SCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KN 70
SCR M P IFI N++P + + F +G ++ C + K
Sbjct: 98 SCRIMWSQRDPSLRKGNNGNIFIKNLDPSIDHKALHDTFSAFGNILSCKIAHDEQGNSKG 157
Query: 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLS 123
YGFVH E E +AIK +NG ++N++ + + SRK + T ++V N+
Sbjct: 158 YGFVHYETLEAAESAIKSVNGMLLNDRKVFVGHHISRKERESKLGESRVQFTNIYVKNIP 217
Query: 124 DNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 175
+ E+ +LF YGT+ C I R+ +GFV+ + D + +L+ G+
Sbjct: 218 FDVTDEELSQLFGKYGTITSCVITRDDDGTSKGFGFVNFEKHQDAQNAVDDLHKKDFRGQ 277
Query: 176 PMKV 179
+ V
Sbjct: 278 DLYV 281
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 34/212 (16%)
Query: 29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEE 81
G S V I++ N+ + E + LF KYG + C + K +GFV+ E ++
Sbjct: 202 GESRVQFTNIYVKNIPFDVTDEELSQLFGKYGTITSCVITRDDDGTSKGFGFVNFEKHQD 261
Query: 82 GRTAIKELN-------------GQIVNEKPLKI----EAATSRKGPNTPTTKVFVGNLSD 124
+ A+ +L+ Q NE+ ++ E A K ++V NL D
Sbjct: 262 AQNAVDDLHKKDFRGQDLYVSRAQKKNEREEELRRQYEEAKLEKMSKYQGVNLYVKNLDD 321
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGK 175
+ +R+ F YG + I+R+ +GFV SP D + + E+NG ++ K
Sbjct: 322 DMDDDRLRDEFSVYGVITSAKIMRDEKTNISRGFGFVCFTSPEDATRAVTEMNGRIIGSK 381
Query: 176 PMKVQISTSRVRQRPGVDEVVIGQKSVPVQAL 207
P+ V I+ + +R + E+ + Q++ QA+
Sbjct: 382 PIYVAIAQRKEVRRSQL-EIQMAQRNQLKQAM 412
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/205 (21%), Positives = 94/205 (45%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R
Sbjct: 253 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRR 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPASAI 397
Score = 42.7 bits (99), Expect = 0.090, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRREFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/205 (21%), Positives = 95/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPASAI 397
Score = 43.1 bits (100), Expect = 0.066, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 42.7 bits (99), Expect = 0.081, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 42.7 bits (99), Expect = 0.081, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 66 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 125
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 126 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 185
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 186 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 245
Query: 187 RQR 189
++
Sbjct: 246 ERQ 248
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 168 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 227
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 228 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 287
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 288 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 347
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 348 ERKAHLTNQYMQRVAGMRALPANAI 372
Score = 42.7 bits (99), Expect = 0.081, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 254 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 295
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 296 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 347
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 42.7 bits (99), Expect = 0.081, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 42.7 bits (99), Expect = 0.086, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 42.7 bits (99), Expect = 0.086, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 108 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 167
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 168 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKEL 227
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 228 FSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKV 287
Query: 187 RQR 189
++
Sbjct: 288 ERQ 290
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/205 (21%), Positives = 94/205 (45%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 210 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMN 269
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R
Sbjct: 270 GKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRR 329
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 330 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 389
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 390 ERKAHLTNQYMQRVAGMRALPASAI 414
Score = 42.7 bits (99), Expect = 0.094, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 296 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRREFSPFGSI 337
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 338 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 389
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G +FI N++ + + F +G ++ C VV + YGFVH E E
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+ +NG ++N++ + + SR+ T V++ N ++ +RE+
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ R +GFV+ + + K + E+NG V+G+ + V + R+
Sbjct: 211 FSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + +R +F +G + V+ + +GFV+ N EE + A+ E+N
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ VN +K ++ ++ RK ++ +V NL D +R+
Sbjct: 253 GKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F+PYGT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G + +R F YG + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV+ KPL + A ++ T ++ L+
Sbjct: 356 RIVSTKPLYVALAQRKEERKAILTNQYMQRLA 387
>gi|449440612|ref|XP_004138078.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 330
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 24/176 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ E + LFEK G V E D + +GFV M EE A+
Sbjct: 153 KLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDT 212
Query: 89 LNGQIVNEKPLKIEAATSRKG-------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N ++ + L + A R P PT +++VGNL + + +LF +G V
Sbjct: 213 FNRYDLSGRLLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKV 272
Query: 142 VECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
V+ ++ R +GFV + D +N I L+G +DG+ ++V ++ R R+
Sbjct: 273 VDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRR 328
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
TF+I++GN+ + LF ++GKVV+ V+ + +GFV M ++ AI
Sbjct: 245 TFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAI 304
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ ++ + +++ A R
Sbjct: 305 AALDGQSLDGRAIRVNVAEER 325
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N S +L+R +FEKYG++ V+ K +GFV E+ E A+ LN
Sbjct: 194 VYVKNFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKGFGFVAFEDPEAAEKAVASLN 253
Query: 91 G-QIVNEKPL----------------------KIEAATSRKGPNTPTTKVFVGNLSDNTR 127
G +IV KPL K+E + +G N ++V N+ DN
Sbjct: 254 GKEIVEGKPLFVGRAQKKAERQQELKRKFEQLKMERLSRYQGVN-----LYVKNIDDNID 308
Query: 128 APEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+R+ F P+GT+ ++ + +GFV S + K + E+NG +V KP+ V
Sbjct: 309 DERLRKEFTPFGTITSAKVMLEDGRSKGFGFVCFSSAEEATKAVTEMNGRIVGSKPLYVA 368
Query: 181 ISTSR 185
++ +
Sbjct: 369 LAQRK 373
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSTFGNILSCKVAQDESGTSKGYGFVHFETEE 150
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I ++NG ++N K + + RK T V+V N ++ +RE
Sbjct: 151 AANKSIDKVNGMLLNGKRVFVGKFIPRKEREKELGEKAKRFTNVYVKNFGEDFSDDLLRE 210
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGM-MVDGKPMKV 179
+F YG + ++ + +GFV + P+ K + LNG +V+GKP+ V
Sbjct: 211 MFEKYGRITSHKVMSKDDGKSKGFGFVAFEDPEAAEKAVASLNGKEIVEGKPLFV 265
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q ++ ++SRY +N+ ++ N++ E +R F +G +
Sbjct: 281 KFEQLKMERLSRYQG--VNL----------------YVKNIDDNIDDERLRKEFTPFGTI 322
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 323 TSAKVMLEDGRSKGFGFVCFSSAEEATKAVTEMNGRIVGSKPLYVALAQRKE 374
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G +FI N++ + + F +G ++ C VV + YGFVH E E
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+ +NG ++N++ + + SR+ T V++ N ++ +RE+
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ R +GFV+ + + K + E+NG V+G+ + V + R+
Sbjct: 211 FSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + +R +F +G + V+ + +GFV+ N EE + A+ E+N
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ VN +K ++ + RK ++ +V NL D +R+
Sbjct: 253 GKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F PYGT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G + +R F YG + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV+ KPL + A ++ T ++ L+
Sbjct: 356 RIVSTKPLYVALAQRKEERKAILTNQYMQRLA 387
>gi|259648115|dbj|BAI40365.1| TIA-1 homologue [Bombyx mori]
Length = 402
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 19/175 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++P + + LF + G V C +++ Y F+ TA+ +N +
Sbjct: 10 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHTAAVTALAAMNKR 69
Query: 93 IVNEKPLKIEAATSRKG-PNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+V +K +K+ ATS P T T+ +FVG+LS +RE F P+G + C IVR
Sbjct: 70 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
+ Y FV + D I+ +NG + + ++ ST + + GV+E
Sbjct: 130 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK-GVNE 183
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 34/164 (20%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + IF+G+++P ++R F +G++ C +V K Y FV
Sbjct: 86 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 78 NDEEGRTAIKELNGQIVNEKPLKI-------------EAATSRKGPNTPT---------- 114
+ AI+ +NGQ + + ++ E A S K PT
Sbjct: 146 KKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSP 205
Query: 115 --TKVFVGNLSDNTRAPEVRE-LFVPYGTVVECDIVRNYGFVHI 155
T V+ G + N E+ + F +G + + + R+ G+ I
Sbjct: 206 TNTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRVFRDKGYAFI 249
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 121 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 180
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T V+V N+
Sbjct: 181 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYVKNIDP 240
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELN 168
E RELF YG + I R+ +GFV ++D + + ELN
Sbjct: 241 EVTDEEFRELFGKYGDITSATISRDDSGKSRGFGFVNYVDHQNAQSAVDELN 292
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 77/157 (49%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ N +G A+++L
Sbjct: 52 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 111
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ +P +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 112 NYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 169
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 170 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK 206
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 24/144 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++P + E R LF KYG + + ++ +GFV+ + + ++A+ ELN
Sbjct: 233 VYVKNIDPEVTDEEFRELFGKYGDITSATISRDDSGKSRGFGFVNYVDHQNAQSAVDELN 292
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ + + L + EAA K ++V NL+D+ ++RE
Sbjct: 293 DKDFHSQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDDKLRE 352
Query: 134 LFVPYGTVVECDIVRNYGFVHIDS 157
LF P+GT+ ++R+ V DS
Sbjct: 353 LFSPFGTITSAKVMRDTVGVSSDS 376
>gi|38141765|dbj|BAD00701.1| TIA-1 homologue [Bombyx mori]
Length = 388
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 19/175 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++P + + LF + G V C +++ Y F+ TA+ +N +
Sbjct: 10 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHTAAVTALAAMNKR 69
Query: 93 IVNEKPLKIEAATSRKG-PNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+V +K +K+ ATS P T T+ +FVG+LS +RE F P+G + C IVR
Sbjct: 70 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
+ Y FV + D I+ +NG + + ++ ST + + GV+E
Sbjct: 130 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK-GVNE 183
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 34/164 (20%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + IF+G+++P ++R F +G++ C +V K Y FV
Sbjct: 86 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 78 NDEEGRTAIKELNGQIVNEKPLKI-------------EAATSRKGPNTPT---------- 114
+ AI+ +NGQ + + ++ E A S K PT
Sbjct: 146 KKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSP 205
Query: 115 --TKVFVGNLSDNTRAPEVRE-LFVPYGTVVECDIVRNYGFVHI 155
T V+ G + N E+ + F +G + + + R+ G+ I
Sbjct: 206 TNTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRVFRDKGYAFI 249
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ + +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 42.7 bits (99), Expect = 0.081, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 78 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEA 137
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++EL
Sbjct: 138 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKEL 197
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
F YG + ++ + +GFV + D K + ++NG ++G+ + V
Sbjct: 198 FSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYV 250
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAI---- 86
++I N E ++ LF KYG + V+ K +GFV E E+ + A+
Sbjct: 180 VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMN 239
Query: 87 -KELNGQIV------------NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
KELNG+ V NE K E + ++V NL D +R+
Sbjct: 240 GKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 299
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 300 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 358
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 283 LYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 342
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV KPL + A ++ T ++ ++
Sbjct: 343 RIVATKPLYVALAQRKEERQAHLTNQYMQRMA 374
>gi|449501439|ref|XP_004161367.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like, partial
[Cucumis sativus]
Length = 324
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 24/176 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ E + LFEK G V E D + +GFV M EE A+
Sbjct: 147 KLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDT 206
Query: 89 LNGQIVNEKPLKIEAATSRKG-------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N ++ + L + A R P PT +++VGNL + + +LF +G V
Sbjct: 207 FNRYDLSGRLLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKV 266
Query: 142 VECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
V+ ++ R +GFV + D +N I L+G +DG+ ++V ++ R R+
Sbjct: 267 VDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRR 322
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
TF+I++GN+ + LF ++GKVV+ V+ + +GFV M ++ AI
Sbjct: 239 TFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAI 298
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ ++ + +++ A R
Sbjct: 299 AALDGQSLDGRAIRVNVAEER 319
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 45/205 (21%), Positives = 95/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVDEVVI----GQKSVPVQAL 207
++ + + G +++P A+
Sbjct: 373 ERKAHLTNQYMQREAGMRALPANAI 397
Score = 42.7 bits (99), Expect = 0.088, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|448123237|ref|XP_004204643.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|448125519|ref|XP_004205201.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358249834|emb|CCE72900.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358350182|emb|CCE73461.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
Length = 505
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 86/180 (47%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+F+G ++ E ++ FE G V V+ + YG+V E + + A+KE
Sbjct: 293 LFVGRLSWNIDDEWLQREFEPLGGVTGARVIYEKASGKSRGYGYVDFETKSQAQHALKEY 352
Query: 90 NGQIVNEKPLKIEAATSRKGPN---------------TPTTKVFVGNLSDNTRAPEVREL 134
G+ ++ +P+ ++ + S+ P+ P++ +F+GNLS N + + ++
Sbjct: 353 QGREIDGRPINLDMSESKPRPSNPRFDRAKQFGDVPSAPSSTLFIGNLSFNAQRDNLYDI 412
Query: 135 FVPYGTVVECDI--------VRNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSR 185
F YG VV C + + +G++ + D K ++ LNG V+G+P ++ ST R
Sbjct: 413 FGEYGRVVSCRMPTHPDTQQPKGFGYIEFSTVDEAKAALEALNGEYVEGRPCRLDFSTPR 472
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGR 83
S + +FIGN++ + + +F +YG+VV C + K +G++ +E +
Sbjct: 389 SAPSSTLFIGNLSFNAQRDNLYDIFGEYGRVVSCRMPTHPDTQQPKGFGYIEFSTVDEAK 448
Query: 84 TAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK 116
A++ LNG+ V +P +++ +T R+ N P+ +
Sbjct: 449 AALEALNGEYVEGRPCRLDFSTPRENSNRPSPR 481
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 102 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFV 153
++ ++K P T +FVG LS N ++ F P G V ++ R YG+V
Sbjct: 279 DSKRTKKQDEEPAT-LFVGRLSWNIDDEWLQREFEPLGGVTGARVIYEKASGKSRGYGYV 337
Query: 154 HIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVR 187
++ +KE G +DG+P+ + +S S+ R
Sbjct: 338 DFETKSQAQHALKEYQGREIDGRPINLDMSESKPR 372
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 42.7 bits (99), Expect = 0.088, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P GT IFI N++ + + F +G+++ C + K YGFV E ++
Sbjct: 112 PSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAED 171
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
+ AI +LNG ++N+K + + ++ + +K V+V NLS++ +++ F
Sbjct: 172 SAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEF 231
Query: 136 VPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
YGT+ ++R+ +GFV+ + + D K ++ LNG VD K V
Sbjct: 232 GAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYV 283
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 90/185 (48%), Gaps = 33/185 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ + + ++ F YG + ++++ +GFV+ EN E+ A++ LN
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALN 272
Query: 91 GQIVNEKPLKIEAATSR-------KGPNTPTTK-----------VFVGNLSDNTRAPEVR 132
G+ V++K + A + KG T K +++ NL D+ +++
Sbjct: 273 GKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLK 332
Query: 133 ELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTS 184
E+F +GT+ I+R+ GFV +P + ++ + E+NG M+ KP+ V ++
Sbjct: 333 EMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQR 392
Query: 185 RVRQR 189
+ +R
Sbjct: 393 KEDRR 397
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 23/161 (14%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G++ + + LF + G+VV V ++ YG+V+ N ++ A+
Sbjct: 31 TTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAL 90
Query: 87 KELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVV 142
LN +N K +++ + +SRK + T +F+ NL + + F +G ++
Sbjct: 91 DVLNFTPMNNKSIRVMYSHRDPSSRK---SGTANIFIKNLDKTIDHKALHDTFSSFGQIM 147
Query: 143 ECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
C I + YGFV ++ D I +LNGM+++ K
Sbjct: 148 SCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDK 188
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI ++NG ++N++ + + SRK T V++ N D+ ++E+
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEM 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F YG + ++ + +GFV + D K + E+ G ++GK M V + +V
Sbjct: 211 FGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + E ++ +F KYG + V+ K +GFV E E+ + A+ E+
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMY 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F+P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 EFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 126 CRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAVDEHGNSKGY 185
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E + AIK +NG ++NEK + + +K + T ++V N+
Sbjct: 186 GFVHYETSDAANQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDA 245
Query: 125 NTRAPEVRELFVPYGTVVECDI-------VRNYGFVH-IDSPDINKCIKELNGMMVDGKP 176
T E RELF YG + + VR +GFV+ I D K + ELN + G+
Sbjct: 246 ETTDDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRHEDAAKAVDELNDLDFKGQK 305
Query: 177 MKV 179
+ V
Sbjct: 306 LYV 308
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 21/171 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEND 79
P ++ + +++G ++P + ++ LF G+V V ++ Y +V+ +
Sbjct: 47 PTNANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 106
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFV 136
+G A++ELN ++ KP +I S++ P T VF+ NL + + F
Sbjct: 107 ADGERALEELNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFA 164
Query: 137 PYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
+G ++ C + + YGFVH ++ D N+ IK +NGM+++ K + V
Sbjct: 165 AFGNILSCKVAVDEHGNSKGYGFVHYETSDAANQAIKSVNGMLLNEKKVFV 215
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
I++ N++ T+ + R LFEKYG++ + V+ +GFV+ E+ A+ ELN
Sbjct: 238 IYVKNIDAETTDDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRHEDAAKAVDELN 297
Query: 91 -----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E+ L+ EA K ++V NL+D E+R+
Sbjct: 298 DLDFKGQKLYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDEELRK 357
Query: 134 LFVPYGTVVECDIVRN 149
+F PYG + ++R+
Sbjct: 358 IFEPYGAITSAKVMRD 373
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF KYGK + V+ K +GFV E EE A++E+N
Sbjct: 180 VYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMN 239
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K ++ +A R+ ++ ++ NL D ++R+
Sbjct: 240 GKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 299
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 300 EFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 359
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + + G +++P A+
Sbjct: 360 ERKAHLTNQYMQRIAGMRALPANAI 384
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E +
Sbjct: 78 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 137
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D+ ++EL
Sbjct: 138 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEL 197
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 175
F YG + ++ + +GFV + + NK ++E+NG ++GK
Sbjct: 198 FGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGK 246
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
RF+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 266 RFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 307
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 308 TSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 359
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 20/178 (11%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P F G IFI N++ + + F +G ++ C V K Y
Sbjct: 107 RIMWSHRD-PAFRKSGVGNIFIKNLDKDIDNKALHDTFTAFGTILSCKVATDLAGNSKGY 165
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK----GPNTPTTKVFVGNLSDNTR 127
GFVH E +E + AI+++NG ++ K + + R T VFV NLS+N
Sbjct: 166 GFVHYEKEEAAQLAIEKVNGMLLEGKKVFVGPFLKRTERPVDKEQHYTNVFVKNLSENLT 225
Query: 128 APEVRELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELNGMMVDGKPM 177
EV ++F +G V I+++ +GF++ D+ + + LNG +DGK +
Sbjct: 226 DEEVEKMFNEHGMVTSFAIMKDEAGKSKGFGFINFEDAEGAHAAVTALNGKEIDGKEL 283
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 84/184 (45%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N++ + E + +F ++G V ++K+ +GF++ E+ E A+ LN
Sbjct: 215 VFVKNLSENLTDEEVEKMFNEHGMVTSFAIMKDEAGKSKGFGFINFEDAEGAHAAVTALN 274
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++ K L K + + ++V NL D ++R
Sbjct: 275 GKEIDGKELYCGRAQKKAEREAELKQKFDEVRQERIAKYQGMNLYVKNLVDEVDDDQLRA 334
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++++ +GFV SP+ + + E+NG M+ GKPM V ++ R
Sbjct: 335 EFAPHGTITSAKVMKDSAGKSKGFGFVCYSSPEEATRAVTEMNGKMLLGKPMYVALAQRR 394
Query: 186 VRQR 189
+R
Sbjct: 395 EVRR 398
>gi|297799522|ref|XP_002867645.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
gi|297313481|gb|EFH43904.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
Length = 305
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 24/176 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ + + LFE+ G V E D + +GFV M EE TA+++
Sbjct: 128 KLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEK 187
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N +N + L + A R + P P +V+VGNL + + ++F +G V
Sbjct: 188 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQVFSEHGKV 247
Query: 142 VECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
VE +V R +GFV + + ++N I L+G ++G+ ++V ++ R R+
Sbjct: 248 VEARVVYDRETGRSRGFGFVTMSNENELNDAIAALDGQNMEGRAIRVNVAEERPRR 303
Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
F++++GN+ + +F ++GKVVE VV + +GFV M N+ E AI
Sbjct: 220 AFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNENELNDAI 279
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ + + +++ A R
Sbjct: 280 AALDGQNMEGRAIRVNVAEER 300
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 27/185 (14%)
Query: 22 ISCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------K 69
+ CR M P G+ IFI N++P + + F +G ++ C + +
Sbjct: 111 VPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKALHDTFSVFGNILSCKIATDEAGNSR 170
Query: 70 NYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNL 122
+GFVH E+DE + AI +NG ++N + + + S+K + T V+V N+
Sbjct: 171 GFGFVHFEDDEAAKEAIDAINGMLLNGQEVYVAQHVSKKDRQSKLDEAKANFTNVYVKNI 230
Query: 123 SDNTRAPEVRELFVPYGTVVECDI-------VRNYGFVHIDSP-DINKCIKELNGMMVDG 174
+T E E F G + + +R +GFV+ ++ D K ++ELN G
Sbjct: 231 HPDTGDEEFEEFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELNETDFKG 290
Query: 175 KPMKV 179
+ + V
Sbjct: 291 QTLHV 295
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++P T E F K G + + K+ +GFV+ EN + A++ELN
Sbjct: 225 VYVKNIHPDTGDEEFEEFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELN 284
Query: 91 -----GQIVN------------EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ ++ E + EA K +FV NL D ++ E
Sbjct: 285 ETDFKGQTLHVGRAQKKHERLQELKKQYEAFRLEKLEKYQGVNLFVKNLDDTIDDQKLEE 344
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F PYGT+ ++R+ +GFV +P + K I E N +V GKP+ V I+ +
Sbjct: 345 EFAPYGTITSVKVMRSENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 404
Query: 186 VRQR 189
+R
Sbjct: 405 DVRR 408
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P S L+ +F G V V ++ Y +V+ + E G+TAI++L
Sbjct: 44 LYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIEKL 103
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N + P +I S++ P+ + +F+ NL + + + F +G ++ C I
Sbjct: 104 NYAPIKGVPCRI--MWSQRDPSMRKKGSGNIFIKNLHPDIDNKALHDTFSVFGNILSCKI 161
Query: 147 V-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
R +GFVH + + K I +NGM+++G+ + V S+ ++ +DE
Sbjct: 162 ATDEAGNSRGFGFVHFEDDEAAKEAIDAINGMLLNGQEVYVAQHVSKKDRQSKLDEA 218
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G +V C V K YGFV N+E
Sbjct: 116 PSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEE 175
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVRELF 135
+ AI++LNG ++N+K + + R+ T T V+V NL+++T +++ F
Sbjct: 176 SAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAF 235
Query: 136 VPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
YG + ++++ +GFV+ + + D + ++ LNG D K V
Sbjct: 236 GEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYV 287
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 89/184 (48%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ T+ + ++ F +YGK+ V+K+ +GFV+ EN ++ A++ LN
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 91 GQIVNEKPLKIEAATSRKGPNTP-----------------TTKVFVGNLSDNTRAPEVRE 133
G ++K + A + T ++ ++V NL + +++E
Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 336
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+F P+GTV ++R+ GFV +P + + + +L+G M++ KP+ V I+ +
Sbjct: 337 IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK 396
Query: 186 VRQR 189
+R
Sbjct: 397 EDRR 400
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 81/168 (48%), Gaps = 21/168 (12%)
Query: 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEG 82
+ G +++G+++ + + F + G VV V ++ YG+V+ N ++
Sbjct: 31 TQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDA 90
Query: 83 RTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYG 139
AI+ELN + KP+++ S + P+ + +F+ NL ++ + + F +G
Sbjct: 91 ARAIQELNYIPLYGKPIRV--MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG 148
Query: 140 TVVECDIV-------RNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV 179
+V C + + YGFV + + K I++LNGM+++ K + V
Sbjct: 149 NIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 88 ELNGQIVNEKPLKIEAATSRKGPNTPT----TKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
+L GQ N + +A + G T T T ++VG+L N ++ + F GTVV
Sbjct: 5 QLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVT 64
Query: 144 CDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
+ R+ YG+V+ +P D + I+ELN + + GKP++V S
Sbjct: 65 VRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYS 112
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ ++ + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDIKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRVVATKPLYVALA 368
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
++V KPL + A ++
Sbjct: 356 RVVATKPLYVALAQRKE 372
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 159
P+ P ++VG+L + + E F P G ++ + R+ Y +V+ P D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 160 INKCIKELNGMMVDGKPMKVQISTSRVRQR-PGVDEVVIG--QKSVPVQAL 207
+ + +N ++ GKP+++ S R GV + I KS+ ++AL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDIKAL 115
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 130 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGASKGY 189
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T V+V N++
Sbjct: 190 GFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAA 249
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKP 176
+ + R+LF YG V + R+ +GFV+ + + K + ELN G+
Sbjct: 250 DVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESAFKAVDELNNKDFHGQD 309
Query: 177 MKV 179
+ V
Sbjct: 310 LYV 312
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 24/135 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ + + R LFEKYG V + ++ +GFV+ E A+ ELN
Sbjct: 242 VYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESAFKAVDELN 301
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ + + L + EAA K +++ NL D+ ++RE
Sbjct: 302 NKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKLRE 361
Query: 134 LFVPYGTVVECDIVR 148
+F +G++ ++R
Sbjct: 362 MFKDFGSITSAKVMR 376
>gi|324497903|gb|ADY39600.1| putative TIA1 protein [Hottentotta judaicus]
Length = 196
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++P + ELI LF + G V+ C ++ Y FV + + A+ +N +
Sbjct: 2 LYVGNLDPSVTEELILALFTQIGPVIGCKIIHEPGNDPYCFVEFTDHQAAAAALLAMNKR 61
Query: 93 IVNEKPLKIEAATSR-KGPNTPTTK---VFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
K +K+ ATS P T+K +FVG+LS +++E F P+G + +C +VR
Sbjct: 62 QCLGKEMKVNWATSPGNTPKQDTSKHYHIFVGDLSPEIETQQLKEAFAPFGEISDCRVVR 121
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+ YGFV + D I +NG + + ++ +T +
Sbjct: 122 DPQTLKSKGYGFVSFVKKTDAENAIATMNGQWLGSRAIRTNWATRK 167
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + + IF+G+++P + ++ F +G++ +C VV K YGFV
Sbjct: 78 NTPKQDTSKHYHIFVGDLSPEIETQQLKEAFAPFGEISDCRVVRDPQTLKSKGYGFVSFV 137
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP 110
+ AI +NGQ + + ++ AT RK P
Sbjct: 138 KKTDAENAIATMNGQWLGSRAIRTNWAT-RKPP 169
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 27/190 (14%)
Query: 23 SCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KN 70
+CR M P GT IFI N++P + + F +G ++ C V K
Sbjct: 149 ACRIMWSQRDPSLRKTGTGNIFIKNLDPAIDNKALHDTFSAFGTILSCKVALDEYGNSKG 208
Query: 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLS 123
YGFVH + + AI+ +NG ++N+K + + SR+ + T V++ N+
Sbjct: 209 YGFVHFASIDSANAAIEHVNGMLLNDKKVYVGHHVSRRDRQSKFEAMKANFTNVYIKNID 268
Query: 124 DNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
E LF +G + +V R +GFV+ +S + K + E+N GK
Sbjct: 269 PEVTDEEFSGLFEKFGAITSFSLVKDESGKPRGFGFVNFESHEAAQKAVDEMNDYEFHGK 328
Query: 176 PMKVQISTSR 185
+ V + R
Sbjct: 329 KLYVGRAQKR 338
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N++P + E LFEK+G + +VK+ +GFV+ E+ E + A+ E+N
Sbjct: 262 VYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRGFGFVNFESHEAAQKAVDEMN 321
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
+ K L + A R K +F+ NLSD ++
Sbjct: 322 DYEFHGKKLYVGRAQKRHEREAELRKRYEQMKLEKMSKYQGVNLFIKNLSDEVDDNLLKT 381
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F +GT+ ++ + +GFV SP + K I E+N M+ GKP+ V ++ +
Sbjct: 382 EFSAFGTITSAKVMTDENGKSKGFGFVCYSSPEEATKAIAEMNQRMLAGKPLYVALAQRK 441
Query: 186 VRQR 189
+R
Sbjct: 442 DVRR 445
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 25/112 (22%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
R++Q +L K+S+Y +FI N++ L++ F +G +
Sbjct: 348 RYEQMKLEKMSKYQG------------------VNLFIKNLSDEVDDNLLKTEFSAFGTI 389
Query: 63 VECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
V+ K +GFV + EE AI E+N +++ KPL + A +
Sbjct: 390 TSAKVMTDENGKSKGFGFVCYSSPEEATKAIAEMNQRMLAGKPLYVALAQRK 441
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 136 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 195
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 196 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 255
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + +V + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 256 FGKFGPALSVKVVTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKV 315
Query: 187 RQR 189
++
Sbjct: 316 ERQ 318
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + VV K +GFV E E+ R A+ E+N
Sbjct: 238 VYIKNFGEDMDDERLKDLFGKFGPALSVKVVTDESGKSKGFGFVSFERHEDARKAVDEMN 297
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 298 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 357
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 358 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 416
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 341 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 400
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV KPL + A ++ T ++ ++
Sbjct: 401 RIVATKPLYVALAQRKEERQAHLTNQYMQRMA 432
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV KPL + A ++ T ++ ++
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQYMQRMA 387
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 21/163 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 82 PSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDEKGNSKGYGFVHFETEE 141
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
T+I+++NG ++N K + + RK T V+V N D ++E
Sbjct: 142 SANTSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGDELNDETLKE 201
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNG 169
+F YGT+ ++ R +GFV ++P+ ++ELNG
Sbjct: 202 MFEKYGTITSHRVMIKDGKSRGFGFVAFENPESAEHAVQELNG 244
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 41/184 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N + E ++ +FEKYG + V+ + +GFV EN E A++ELNG
Sbjct: 185 VYVKNFGDELNDETLKEMFEKYGTITSHRVMIKDGKSRGFGFVAFENPESAEHAVQELNG 244
Query: 92 QIVNE-----------------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRA 128
+ + E + LK+E T +G N ++V NL D+
Sbjct: 245 KELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVN-----LYVKNLDDSIDD 299
Query: 129 PEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQI 181
+R+ F P+GT+ ++ + +GFV + + K + E+NG +V KP+ V +
Sbjct: 300 ERLRKEFSPFGTITSAKVMLEEGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVAL 359
Query: 182 STSR 185
+ +
Sbjct: 360 AQRK 363
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 80/161 (49%), Gaps = 21/161 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++ + ++ F G V+ V ++ Y +V+ + + A+ +
Sbjct: 4 LYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ +P++I S++ P+ + VF+ NL N + + F +G ++ C +
Sbjct: 64 NFDLIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 121
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
++ YGFVH ++ + N I+++NGM+++GK + V
Sbjct: 122 AQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGKKVYV 162
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 25/143 (17%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
RF+Q ++ +++RY +++ N++ E +R F +G +
Sbjct: 271 RFEQLKMERLTRYQG------------------VNLYVKNLDDSIDDERLRKEFSPFGTI 312
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK 116
V+ K +GFV EE A+ E+NG+IV KPL + A ++
Sbjct: 313 TSAKVMLEEGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLAS 372
Query: 117 VFVGNLSDNTRAPEVRELFVPYG 139
++ ++ N R + ++F P G
Sbjct: 373 QYMQRMA-NMRMQHMGQIFQPGG 394
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G+ I+I N++P + + F +G ++ C V + +
Sbjct: 109 CRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDDNGVSRGF 168
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH EN+ + R AI+ +NG ++N++ + + S+K + T ++V N+
Sbjct: 169 GFVHFENESDARDAIEAVNGMLMNDQEVYVAWHVSKKDRQSKLEEVKAKFTNIYVKNIDL 228
Query: 125 NTRAPEVRELFVPYG----TVVECDI---VRNYGFVHI-DSPDINKCIKELNGMMVDGKP 176
T E +LF YG V+E D +R +GF++ D + + ELN G+
Sbjct: 229 ETSQEEFEQLFSKYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDELNESDFRGQT 288
Query: 177 MKV 179
+ V
Sbjct: 289 LYV 291
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGK----VVECDV---VKNYGFVHMENDEEGRTAIKELN 90
I++ N++ TS E LF KYGK V+E D ++ +GF++ E+ A+ ELN
Sbjct: 221 IYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDELN 280
Query: 91 -----GQIV----------NEKPLKIEAATSR--KGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + ++ LK + T+R K +F+ NL D+ ++++
Sbjct: 281 ESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEKLKD 340
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ R +GFV +P + K I E N +V GKP+ V I+ +
Sbjct: 341 EFAPFGTITSVKVMKDEAGSSRGFGFVCFSTPEEATKAITEKNQQLVAGKPLYVAIAQRK 400
Query: 186 VRQR 189
+R
Sbjct: 401 EVRR 404
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 86/177 (48%), Gaps = 21/177 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P S L+ +F G V V ++ Y +V+ + E GR AI++L
Sbjct: 40 LYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGRKAIEQL 99
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P+ + +++ NL + E F +G ++ C +
Sbjct: 100 NYTLIKGKPCRI--MWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKV 157
Query: 147 V-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
R +GFVH ++ D I+ +NGM+++ + + V S+ ++ ++EV
Sbjct: 158 ATDDNGVSRGFGFVHFENESDARDAIEAVNGMLMNDQEVYVAWHVSKKDRQSKLEEV 214
>gi|159164258|pdb|2DNQ|A Chain A, Solution Structure Of Rna Binding Domain 1 In Rna-Binding
Protein 30
Length = 90
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG 91
S G K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+
Sbjct: 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH 64
Query: 92 QIVNEKPLKIEAATSR-KGPNTPTT 115
++ + +EA+ ++ K + P++
Sbjct: 65 YKLHGVNINVEASKNKSKASSGPSS 89
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 174
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 10 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 69
Query: 175 KPMKVQISTSRVRQRPG 191
+ V+ S ++ + G
Sbjct: 70 VNINVEASKNKSKASSG 86
>gi|297608990|ref|NP_001062481.2| Os08g0557100 [Oryza sativa Japonica Group]
gi|255678651|dbj|BAF24395.2| Os08g0557100, partial [Oryza sativa Japonica Group]
Length = 194
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 24/173 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+++GN+ E + LFE+ G V +V+ N +GFV M EE AI+
Sbjct: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
LN +N + L + A R + P P + +VGNL + +LF +G V
Sbjct: 77 LNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEV 136
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
V +V R +GFV + S +++ I L+G +DG+P++V ++ R
Sbjct: 137 VNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAER 189
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
F+ ++GN+ + LF ++G+VV VV + +GFV M + EE AI
Sbjct: 109 AFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAI 168
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ ++ +PL++ A R
Sbjct: 169 SALDGQELDGRPLRVNVAAER 189
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 21/179 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G +FI N+ + + F +G ++ C VV + +GFVH E E
Sbjct: 91 PGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
+ AI +NG ++N++ + + SR+ T T ++V NL + +++L
Sbjct: 151 AQQAISTMNGMLLNDRKVFVGHFKSRREREAELGARATAFTNIYVKNLPGHVDERGLQDL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSR 185
F +G ++ ++R+ +GFV+ + + K + ++NGM V G+ + V + R
Sbjct: 211 FSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGMQVSGRLLYVGRAQKR 269
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 82/176 (46%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N+ ++ LF ++GK++ V+++ +GFV+ E EE + A+ ++N
Sbjct: 193 IYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G V+ + L + A R + ++V NL D+ ++R+
Sbjct: 253 GMQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F PYG + ++ + +GFV SP + K + E+NG ++ KP+ V ++
Sbjct: 313 EFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALA 368
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F YG + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+I+ KPL + A ++ T ++ LS
Sbjct: 356 RIIGTKPLYVALAQRKEERKAILTNQYMQRLS 387
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++++
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDI 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGK 175
F YG + ++ R +GFV + D + + E+NG ++GK
Sbjct: 211 FSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGK 259
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + ++ +F KYG + V+ + +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV KPL + A ++ T ++ ++
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQYMQRMA 387
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G +V C V K YGFV N+E
Sbjct: 100 PSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEE 159
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVRELF 135
+ AI++LNG ++N+K + + R+ T T V+V NL+++T +++ F
Sbjct: 160 SAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAF 219
Query: 136 VPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
YG + ++++ +GFV+ + + D + ++ LNG D K V
Sbjct: 220 GEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYV 271
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 89/184 (48%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ T+ + ++ F +YGK+ V+K+ +GFV+ EN ++ A++ LN
Sbjct: 201 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 260
Query: 91 GQIVNEKPLKIEAATSRKGPNTP-----------------TTKVFVGNLSDNTRAPEVRE 133
G ++K + A + T ++ ++V NL + +++E
Sbjct: 261 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 320
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+F P+GTV ++R+ GFV +P + + + +L+G M++ KP+ V I+ +
Sbjct: 321 IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK 380
Query: 186 VRQR 189
+R
Sbjct: 381 EDRR 384
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 81/168 (48%), Gaps = 21/168 (12%)
Query: 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEG 82
+ G +++G+++ + + F + G VV V ++ YG+V+ N ++
Sbjct: 15 TQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDA 74
Query: 83 RTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYG 139
AI+ELN + KP+++ S + P+ + +F+ NL ++ + + F +G
Sbjct: 75 ARAIQELNYIPLYGKPIRV--MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG 132
Query: 140 TVVECDIV-------RNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV 179
+V C + + YGFV + + K I++LNGM+++ K + V
Sbjct: 133 NIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 180
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 101 IEAATSRKGPNTPT----TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN------- 149
+ +A + G T T T ++VG+L N ++ + F GTVV + R+
Sbjct: 2 VTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSL 61
Query: 150 -YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
YG+V+ +P D + I+ELN + + GKP++V S
Sbjct: 62 GYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYS 96
>gi|365986018|ref|XP_003669841.1| hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
gi|343768610|emb|CCD24598.1| hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
Length = 426
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 29/177 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G ++ E ++ FE G VV V+ + YG+V E+ AI+E+
Sbjct: 173 IFVGRLSWSIDDEWLKKEFEHIGGVVGARVIYERGTDRSRGYGYVDFEDKSYAEKAIQEM 232
Query: 90 NGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAPEVRELFVP 137
G+ ++ +P+ ++ +TS+ P+ P+ +F+GNLS N + E F
Sbjct: 233 QGKEIDGRPINVDMSTSKPAGGNDRAKKFGDVPSEPSDTLFLGNLSFNADKDNIYETFSK 292
Query: 138 YGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
YG ++ E + + +G+V + D K ++ L G +D + +++ ST R
Sbjct: 293 YGEIISVRIPTHPETEQPKGFGYVQFSNIEDAKKALEGLQGEYIDNRAVRLDYSTPR 349
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 23 SCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KN 70
+CR M P G IFI N++ + + F +G V+ C V K
Sbjct: 122 ACRIMWSQRDPALRKTGQGNIFIKNLDDAIDNKALHDTFAAFGNVLSCKVATDEMGRSKG 181
Query: 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLS 123
YGFVH E +E +AIK +NG ++N+K + + S+K T V+V N+
Sbjct: 182 YGFVHYETNEAAESAIKAVNGMLLNDKKVYVGHHVSKKDRQAKLDEQKKQFTNVYVKNID 241
Query: 124 DNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDS 157
E RELF P+G V + R+ +GFV+ ++
Sbjct: 242 PEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFET 282
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/200 (21%), Positives = 86/200 (43%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++P + + R LF +G V + ++ +GFV+ E EE + A+ L+
Sbjct: 235 VYVKNIDPEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTLH 294
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ L + E A K +++ NL D+ ++R+
Sbjct: 295 DSDFKGRKLFVSRAQKKSEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDVDDEKLRD 354
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F P+G + ++R +GFV SPD K + E+N M+ KP+ V ++ R
Sbjct: 355 AFEPFGAITSAKVMRTEGGTSKGFGFVCFSSPDEATKAVAEMNNKMMGSKPLYVSLAQRR 414
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R ++ + + + +Q
Sbjct: 415 EVRRQQLESQIAQRNQIRMQ 434
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/176 (23%), Positives = 83/176 (47%), Gaps = 21/176 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P S ++ +F G V V ++ Y +V+ N +G A+++L
Sbjct: 54 LYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERALEQL 113
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ + +I S++ P T +F+ NL D + + F +G V+ C +
Sbjct: 114 NYSLIKGRACRI--MWSQRDPALRKTGQGNIFIKNLDDAIDNKALHDTFAAFGNVLSCKV 171
Query: 147 V-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
+ YGFVH ++ + IK +NGM+++ K + V S+ ++ +DE
Sbjct: 172 ATDEMGRSKGYGFVHYETNEAAESAIKAVNGMLLNDKKVYVGHHVSKKDRQAKLDE 227
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 92/190 (48%), Gaps = 32/190 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ T+ + ++ F +YGK+ V+K+ +GFV+ EN ++ A++ LN
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGDGKSKGFGFVNFENADDAARAVESLN 276
Query: 91 GQIVNEKPLKIEAATSRKGPNTP-----------------TTKVFVGNLSDNTRAPEVRE 133
G ++K + A + T ++ ++V NL + +++E
Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 336
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+F P+GTV C ++R+ GFV +P + + + +L+G M++ KP+ V I+ +
Sbjct: 337 IFSPFGTVTSCKVMRDPNGTSKGSGFVAFSTPEEATEAMSQLSGKMIESKPLYVAIAQRK 396
Query: 186 VRQRPGVDEV 195
+R +V
Sbjct: 397 EDRRAQFSQV 406
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G +V C V K YGFV N+E
Sbjct: 116 PSVRRSGAGNIFIKNLDESIDHKALHDTFSVFGNIVSCKVAVDSSGQSKGYGFVQYANEE 175
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVRELF 135
+ AI++LNG ++N+K + + R+ T T V+V NL+++T +++ F
Sbjct: 176 SAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAF 235
Query: 136 VPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
YG + ++++ +GFV+ + + D + ++ LNG D K V
Sbjct: 236 GEYGKITSAVVMKDGDGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYV 287
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 82/168 (48%), Gaps = 21/168 (12%)
Query: 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEG 82
+ GT +++G+++ + + F + G VV V ++ YG+V+ N ++
Sbjct: 31 AGFGTTSLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDA 90
Query: 83 RTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYG 139
AI+ELN + KP+++ S + P+ + +F+ NL ++ + + F +G
Sbjct: 91 ARAIQELNYIPLYGKPIRV--MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSVFG 148
Query: 140 TVVECDIV-------RNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV 179
+V C + + YGFV + + K I++LNGM+++ K + V
Sbjct: 149 NIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 88 ELNGQIVNEKPLKIEAATSRKGPNTP----TTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
+L GQ N + + +A G T TT ++VG+L N ++ + F G VV
Sbjct: 5 QLQGQTPNGSTVAVTSAPVTSGGATAAGFGTTSLYVGDLDVNVTDSQLFDAFSQMGPVVS 64
Query: 144 CDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
+ R+ YG+V+ +P D + I+ELN + + GKP++V S
Sbjct: 65 VRVCRDLATRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYS 112
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 22/174 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 82 PSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQDEKGQSKGYGFVHFETEE 141
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
T+I+++NG ++NEK + + SRK T V+V N ++ +R+
Sbjct: 142 SANTSIEKVNGMLLNEKKVYVGRFISRKEREKELGEKAKLFTNVYVKNFGEDLTEEALRD 201
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGM-MVDGKPMKV 179
+F +G + ++ R +GFV + P D + +++LNG + DGK + V
Sbjct: 202 MFEKFGPITSHRVMTKDGKSRGFGFVAFEKPEDAEEAVQKLNGKELSDGKVLYV 255
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 41/188 (21%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N + E +R +FEK+G + V+ + +GFV E E+ A+++LNG
Sbjct: 185 VYVKNFGEDLTEEALRDMFEKFGPITSHRVMTKDGKSRGFGFVAFEKPEDAEEAVQKLNG 244
Query: 92 --------------QIVNEKP---------LKIEAATSRKGPNTPTTKVFVGNLSDNTRA 128
Q NE+ LK+E T G N ++V NL D
Sbjct: 245 KELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVN-----LYVKNLDDTIDD 299
Query: 129 PEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQI 181
+R+ F PYGT+ ++ + +GFV +PD K + E+NG +V KP+ V +
Sbjct: 300 ERLRKEFAPYGTITSAKVMLDEGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVAL 359
Query: 182 STSRVRQR 189
+ + ++
Sbjct: 360 AQRKEERK 367
Score = 42.4 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
RF+Q ++ +++RY +++ N++ E +R F YG +
Sbjct: 271 RFEQLKMERLTRYHG------------------VNLYVKNLDDTIDDERLRKEFAPYGTI 312
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV +E A+ E+NG+IV KPL + A ++
Sbjct: 313 TSAKVMLDEGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALAQRKE 364
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 15/167 (8%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +F+ N+ P + + +F +G ++ C V K YGFV E +E
Sbjct: 82 PSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKVATDSAGQSKGYGFVQYETEE 141
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
AI LNG + N + + + R+ T V++ NL ++R+ F P+G
Sbjct: 142 SAEAAINGLNGMLANNRKMFVGLHMRRRDREVKFTNVYIKNLPTEFSEDDLRQEFAPFGE 201
Query: 141 VVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKPMKV 179
+ ++R+ +GFV+ P+ + +++ NG + K + V
Sbjct: 202 ITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKANGKAIGDKTLYV 248
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ G + E ++ LFE++G+V C V+ K GFV E G+ AI +N
Sbjct: 281 LYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMN 340
Query: 91 GQIVNEKPLKIEAATSRK 108
G+IV +KPL + A ++
Sbjct: 341 GRIVGKKPLYVGLAQPKE 358
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 89/201 (44%), Gaps = 33/201 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N+ S + +R F +G++ V+++ +GFV+ + E A+++ N
Sbjct: 178 VYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKAN 237
Query: 91 GQIVNEKPLKIEAATSR------------KGPNTPTTK-----VFVGNLSDNTRAPEVRE 133
G+ + +K L + A + +G + K +++ N+ D +++
Sbjct: 238 GKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLKK 297
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSR 185
LF +G V C ++ + GFV + + + I +NG +V KP+ V ++ +
Sbjct: 298 LFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPK 357
Query: 186 VRQRPGVDEVVIGQKSVPVQA 206
+R + Q+++ + A
Sbjct: 358 -EERKAMLMAHFAQRNLAMAA 377
>gi|125559266|gb|EAZ04802.1| hypothetical protein OsI_26976 [Oryza sativa Indica Group]
Length = 259
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 30/184 (16%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
K+F+GN+ + LFE+ G V +VV + +GFV M EE A++
Sbjct: 75 LKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVE 134
Query: 88 ELNGQIVNEKPLKIEAATSRK----GPNTP---------TTKVFVGNLSDNTRAPEVREL 134
+ NG +PL++ + P +P + K++VGNL+ + L
Sbjct: 135 QFNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENL 194
Query: 135 FVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F GTV++ ++ R +GFV S ++N I L+G+ +DG+ ++V ++ S+
Sbjct: 195 FSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVAESK 254
Query: 186 VRQR 189
R++
Sbjct: 255 PRRQ 258
>gi|115473531|ref|NP_001060364.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|22296371|dbj|BAC10140.1| putative 29 kDa ribonucleoprotein A, chloroplast precursor [Oryza
sativa Japonica Group]
gi|113611900|dbj|BAF22278.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|125601192|gb|EAZ40768.1| hypothetical protein OsJ_25244 [Oryza sativa Japonica Group]
Length = 264
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 30/184 (16%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
K+F+GN+ + LFE+ G V +VV + +GFV M EE A++
Sbjct: 80 LKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVE 139
Query: 88 ELNGQIVNEKPLKIEAATSRK----GPNTP---------TTKVFVGNLSDNTRAPEVREL 134
+ NG +PL++ + P +P + K++VGNL+ + L
Sbjct: 140 QFNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENL 199
Query: 135 FVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F GTV++ ++ R +GFV S ++N I L+G+ +DG+ ++V ++ S+
Sbjct: 200 FSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVAESK 259
Query: 186 VRQR 189
R++
Sbjct: 260 PRRQ 263
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAI 86
G +F+ N+ + +++ +F+K+G +V C V + YGFV E ++ AI
Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAI 169
Query: 87 KELNGQIVNEKPL---KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
+ LN IV +K + K T R P T +++ NL + +RE F +G +V
Sbjct: 170 QTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVS 229
Query: 144 CDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
I R Y FV+ D+P D + + +NG K + V
Sbjct: 230 LAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYV 273
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ S +L+R F ++GK+V + K+ Y FV+ +N E+ R A + +N
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 91 GQIVNEKPLKIEAATSRKGPN-----------------TPTTKVFVGNLSDNTRAPEVRE 133
G K L + A + + ++V N++ E+R+
Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRK 322
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPDIN-KCIKELNGMMVDGKPMKVQISTSR 185
F GT+ ++ + +GFV +P+ +K +G M GKP+ V I+ +
Sbjct: 323 HFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKK 382
Score = 39.3 bits (90), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVE----CD---VVKNYGFVHMENDEEGRTAIKELN 90
I++ NVN + E +R F + G + CD K +GFV EE A+K +
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 91 GQIVNEKPLKIEAATSRK 108
GQ+ + KPL + A ++
Sbjct: 366 GQMFHGKPLYVAIAQKKE 383
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 27 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 86
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ ++EL
Sbjct: 87 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 146
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 147 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 206
Query: 187 RQR 189
++
Sbjct: 207 ERQ 209
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 188
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 189 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 248
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 249 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 307
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 232 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 291
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 292 RIVATKPLYVALAQRKE 308
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 111 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 170
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ ++EL
Sbjct: 171 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 230
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 231 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 290
Query: 187 RQR 189
++
Sbjct: 291 ERQ 293
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 213 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 272
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 273 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 332
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 333 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 388
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 316 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 375
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 376 RIVATKPLYVALAQRKE 392
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 42/182 (23%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVV-------ECDVVKNYGFVHMENDEEGRTAIKELN 90
+++ N++PG + EL++ F ++GK+V EC + +GFV+ EN ++ R A++ +N
Sbjct: 194 LYVKNLDPGITEELLQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMERMN 253
Query: 91 GQIVNEKPLKIEAATSR----------------------KGPNTPTTKVFVGNLSDNTRA 128
G + K L + A R KG N V+V N+ D+
Sbjct: 254 GTELGSKVLYVGRAQKRAEREQILRRQFEEKRKEQITKFKGSN-----VYVKNIDDDVTD 308
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
E+RE F GT+ ++++ +GFV S + +K + +G M KP+ V
Sbjct: 309 EELREHFSQCGTITSAKLMKDDKGRSKGFGFVCFSSSEEASKAVNTFHGYMFHRKPLYVA 368
Query: 181 IS 182
I+
Sbjct: 369 IA 370
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 20/175 (11%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAI 86
G +++ N++ ++ LF ++G V+ C V K +GFV E+++ +AI
Sbjct: 99 GIGNVYVKNLSESIDNVGLQELFGEFGTVLSCKVATFEDGKSKGHGFVQFESEDSANSAI 158
Query: 87 KELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
++LNG IV +K + + + P+ T ++V NL ++E F +G +
Sbjct: 159 EKLNGSIVGDKQIYVGKFVKKSDRVLPSPDAKYTNLYVKNLDPGITEELLQEKFSEFGKI 218
Query: 142 V-------ECDIVRNYGFVHIDSPDINKCIKE-LNGMMVDGKPMKVQISTSRVRQ 188
V EC R +GFV+ ++PD + E +NG + K + V + R +
Sbjct: 219 VSVAIARDECGSSRGFGFVNFENPDDARWAMERMNGTELGSKVLYVGRAQKRAER 273
>gi|344304396|gb|EGW34628.1| hypothetical protein SPAPADRAFT_57674 [Spathaspora passalidarum
NRRL Y-27907]
Length = 414
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 85/179 (47%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+F+G ++ E ++ FE G V+ V+ + YG+V +N + A+ E+
Sbjct: 177 LFVGRLSWNIDDEWLKREFEHIGGVIGARVIMERSTGKSRGYGYVDFDNKDSAEKALVEM 236
Query: 90 NGQIVNEKPLKIEAATSR--------------KGPNTPTTKVFVGNLSDNTRAPEVRELF 135
G+ ++ +P+ ++ +T + P+ P+ +F+GNLS N + + E+F
Sbjct: 237 QGKEIDGRPINLDMSTGKPHASKSNDRAKQFGDTPSAPSDTLFIGNLSFNAQRDNLFEIF 296
Query: 136 VPYGTVVECDI--------VRNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSR 185
+GTV+ C I + +G+V S D K ++ LNG ++G+ ++ S R
Sbjct: 297 GQHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYIEGRACRLDFSAPR 355
>gi|242021493|ref|XP_002431179.1| nucleolysin TIA-1, putative [Pediculus humanus corporis]
gi|212516428|gb|EEB18441.1| nucleolysin TIA-1, putative [Pediculus humanus corporis]
Length = 403
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 18/166 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ + +L+ LF + G V C +++ Y FV N + TA+ +N +
Sbjct: 12 LYVGNLDVSVTEDLLCTLFSQIGSVKGCKIIREPNNDPYAFVEFVNHQAASTALIAMNKR 71
Query: 93 IVNEKPLKIEAATSR----KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
V EK +K+ ATS K + +FVG+LS +RE F P+G + C IVR
Sbjct: 72 HVLEKEIKVNWATSPGNQPKQDTSSHHHIFVGDLSPEIEMHTLREAFAPFGEISNCRIVR 131
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+ Y FV + + I +NG + + ++ ST +
Sbjct: 132 DPQTLKSKGYAFVSFVKKAEAESAIHAMNGQWLGNRSIRTNWSTRK 177
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/187 (18%), Positives = 76/187 (40%), Gaps = 34/187 (18%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + IF+G+++P + +R F +G++ C +V K Y FV
Sbjct: 88 NQPKQDTSSHHHIFVGDLSPEIEMHTLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 147
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP----------------------NTPTT 115
E +AI +NGQ + + ++ +T + P ++PT
Sbjct: 148 KKAEAESAIHAMNGQWLGNRSIRTNWSTRKPPPPRTERSRQGNAKAVSYEEVYNQSSPTN 207
Query: 116 -KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--YGFVHIDSPD-INKCIKELNGMM 171
V+ G ++ + + F +GT+ + ++ Y F+ + + I+ ++
Sbjct: 208 CTVYCGGFTNGINEDLIEKAFSRFGTIQDIRSFKDKGYAFIRFSTKEAATHAIEAMHNAE 267
Query: 172 VDGKPMK 178
++G+ +K
Sbjct: 268 INGQQVK 274
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ ++EL
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|440297981|gb|ELP90622.1| nucleolysin TIA-1, putative [Entamoeba invadens IP1]
Length = 305
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 31/171 (18%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFVHMENDEEGRTA 85
G+FK+F+G ++ + E++ F K+G+V + V++ YGFV E+ TA
Sbjct: 123 GSFKLFVGGLHTEVTNEILYQNFAKFGRVSDARVLRYSQSGKSQGYGFVTFIRKEDAETA 182
Query: 86 IKELNGQIVNEKPLKIEAATSRKGPNTPTTK----------------VFVGNLSDNTRAP 129
++ +NG+ + + +K+ T+ + P T T K V+VG + T
Sbjct: 183 MQMMNGEKIQGRTVKVNWGTATQKP-TETVKRGFDEISRETSNTNNNVYVGGIPKETEES 241
Query: 130 EVRELFVPYGTVVECDIVRN-----YGFVHIDSPD-INKCIKELNGMMVDG 174
+R+LF +G +++ I+R YGFV S D K I LNG ++G
Sbjct: 242 TMRKLFGDFGEIIDLKIMRTDAEKAYGFVRFVSHDNATKAIMMLNGYQLNG 292
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 24/180 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+ + ++ L+ +F G VV C ++K+ YGF+ + A + +N
Sbjct: 41 VHVAGLHESVDETLLSRIFSIVGHVVSCKIMKDKTGTHARYGFIEFIDHTTAEFAKENMN 100
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR-- 148
G++V K LK+ + + K+FVG L + + F +G V + ++R
Sbjct: 101 GRLVYGKELKVNWTHDSQSDAKGSFKLFVGGLHTEVTNEILYQNFAKFGRVSDARVLRYS 160
Query: 149 ------NYGFV-HIDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRP------GVDEV 195
YGFV I D ++ +NG + G+ +KV T+ Q+P G DE+
Sbjct: 161 QSGKSQGYGFVTFIRKEDAETAMQMMNGEKIQGRTVKVNWGTA--TQKPTETVKRGFDEI 218
>gi|42407939|dbj|BAD09078.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|125604308|gb|EAZ43633.1| hypothetical protein OsJ_28256 [Oryza sativa Japonica Group]
gi|215697914|dbj|BAG92121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 305
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 24/173 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+++GN+ E + LFE+ G V +V+ N +GFV M EE AI+
Sbjct: 128 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 187
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
LN +N + L + A R + P P + +VGNL + +LF +G V
Sbjct: 188 LNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEV 247
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
V +V R +GFV + S +++ I L+G +DG+P++V ++ R
Sbjct: 248 VNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAER 300
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
F+ ++GN+ + LF ++G+VV VV + +GFV M + EE AI
Sbjct: 220 AFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAI 279
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ ++ +PL++ A R
Sbjct: 280 SALDGQELDGRPLRVNVAAER 300
>gi|125562527|gb|EAZ07975.1| hypothetical protein OsI_30233 [Oryza sativa Indica Group]
Length = 306
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 24/173 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+++GN+ E + LFE+ G V +V+ N +GFV M EE AI+
Sbjct: 129 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 188
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
LN +N + L + A R + P P + +VGNL + +LF +G V
Sbjct: 189 LNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEV 248
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
V +V R +GFV + S +++ I L+G +DG+P++V ++ R
Sbjct: 249 VNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAER 301
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
F+ ++GN+ + LF ++G+VV VV + +GFV M + EE AI
Sbjct: 221 AFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAI 280
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ ++ +PL++ A R
Sbjct: 281 SALDGQELDGRPLRVNVAAER 301
>gi|268533576|ref|XP_002631916.1| Hypothetical protein CBG07904 [Caenorhabditis briggsae]
Length = 411
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 84/169 (49%), Gaps = 21/169 (12%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+F+GN++P + E + LF + G V + V + + F+ + + A++ +NG+
Sbjct: 39 LFVGNLDPAITDEFLATLFNQIGAVTKAKVCFDGMNDPFAFIEFGDHNQAGQALQAMNGR 98
Query: 93 IVNEKPLKIEAAT-------SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
+ ++ +++ A SRK + VFVG+LS + ++RE F+ +G V E
Sbjct: 99 SLLDREMRVNWAVDASQPGDSRKQETSRHFHVFVGDLSSEVDSTKLREAFLAFGDVSEAK 158
Query: 146 IVRN--------YGFV-HIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
I+R+ YGFV + D + I+++NG + + ++ +T +
Sbjct: 159 IIRDTATNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRTNWATRK 207
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 66 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 125
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 126 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 185
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 186 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 245
Query: 187 RQR 189
++
Sbjct: 246 ERQ 248
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 168 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 227
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 228 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 287
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 288 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 346
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 271 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 330
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV KPL + A ++ T ++ ++
Sbjct: 331 RIVATKPLYVALAQRKEERQAHLTNQYMQRMA 362
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 106 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 165
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ ++EL
Sbjct: 166 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 225
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 226 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 285
Query: 187 RQR 189
++
Sbjct: 286 ERQ 288
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 208 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 267
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 268 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 327
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 328 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 383
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 311 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 370
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 371 RIVATKPLYVALAQRKE 387
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ ++EL
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ ++EL
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|307178104|gb|EFN66931.1| Nucleolysin TIAR [Camponotus floridanus]
Length = 393
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S +L+ LF + G V C +++ Y FV N + TA+ +N +
Sbjct: 10 LYVGNLDASVSEDLLCALFSQIGAVKGCKIIREPGNDPYAFVEFTNHQSAATALAAMNKR 69
Query: 93 IVNEKPLKIEAATSRKG-PNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+K +K+ ATS P T+ +FVG+LS ++E F P+G + C IVR
Sbjct: 70 SFLDKEMKVNWATSPGNQPKLDTSNHHHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQIST 183
+ Y FV + + I +NG + + ++ ST
Sbjct: 130 DPQTLKSKGYAFVSFVKKSEAEAAINAMNGQWLGSRSIRTNWST 173
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 31/161 (19%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + IF+G+++P + ++ F +G++ C +V K Y FV
Sbjct: 86 NQPKLDTSNHHHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAAT--------------SRKGPN--------TPTT 115
E AI +NGQ + + ++ +T + PN +PT
Sbjct: 146 KKSEAEAAINAMNGQWLGSRSIRTNWSTRKPPPPRSERPRHSNNSKPNYEEVYNQSSPTN 205
Query: 116 -KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI 155
V+ G ++ +++ F P+GT+ + + ++ G+ I
Sbjct: 206 CTVYCGGFTNGITDELIKKTFSPFGTIQDIRVFKDKGYAFI 246
>gi|147838149|emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]
Length = 544
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 22/163 (13%)
Query: 39 FIGNVNPGTSVELIR--PLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKEL 89
F+ +N S++ +R +F+K+G ++ C VV K YGFV E++E AI++L
Sbjct: 121 FLVCLNLSDSIDNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKL 180
Query: 90 NGQIVNEKPL---KIEAATSRKGPN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTVV-- 142
NG I++ K + K T R PN T +++ NL + +RE F +G +
Sbjct: 181 NGFIIDGKQIYAGKFVRKTDRVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASL 240
Query: 143 -----ECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
E + R +GFV+ +SP D + ++ LNG+ + K + V
Sbjct: 241 VISKDENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYV 283
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N++P + E +R F ++GK+ + K+ +GFV+ E+ E+ + A++ LN
Sbjct: 213 LYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRALEALN 272
Query: 91 GQIVNEKPLKIEAATSR----------------------KGPNTPTTKVFVGNLSDNTRA 128
G + K L + A + +G N V+V N+ DN
Sbjct: 273 GLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSN-----VYVKNIDDNVND 327
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQ 180
++RE F G + ++R+ +GFV +PD +K + +G M KP+ V
Sbjct: 328 DDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLYVA 387
Query: 181 ISTSR 185
I+ +
Sbjct: 388 IAQRK 392
>gi|50286801|ref|XP_445830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525136|emb|CAG58749.1| unnamed protein product [Candida glabrata]
Length = 425
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 85/179 (47%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVEC--------DVVKNYGFVHMENDEEGRTAIKEL 89
+F+G ++ E ++ FE G VV D + YG+V E+ A+KE+
Sbjct: 178 VFVGRLSWSIDDEWLKQEFEHIGGVVAARVMYERGTDRSRGYGYVDFEDKSYAEKAVKEM 237
Query: 90 NGQIVNEKPLKIEAATSRKG--------------PNTPTTKVFVGNLSDNTRAPEVRELF 135
+G+ ++ +P+ ++ +TS+ P+ P+ +F+GNLS N + E+F
Sbjct: 238 HGKEIDGRPINVDMSTSKPTVNPREDRQKRFGDIPSEPSDTLFLGNLSFNADRDNIYEIF 297
Query: 136 VPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
+G ++ E + + +G+V S D K ++ L G +D +P+++ ST +
Sbjct: 298 GKFGEIISVRIPTHPETEQPKGFGYVQYTSIDDAKKALEALQGEYIDNRPVRLDYSTPK 356
Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC--------DIVRNYGFVHI-DSPDINKC 163
P T VFVG LS + +++ F G VV D R YG+V D K
Sbjct: 175 PAT-VFVGRLSWSIDDEWLKQEFEHIGGVVAARVMYERGTDRSRGYGYVDFEDKSYAEKA 233
Query: 164 IKELNGMMVDGKPMKVQISTSR 185
+KE++G +DG+P+ V +STS+
Sbjct: 234 VKEMHGKEIDGRPINVDMSTSK 255
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV KPL + A ++ T ++ ++
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQYMQRMA 387
>gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thaliana]
Length = 310
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 24/177 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ + + + LFE+ G V E D + +GFV M + +E TA+++
Sbjct: 132 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 191
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N +N + L + A R + P P +V+VGNL + + +LF +G V
Sbjct: 192 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 251
Query: 142 VECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
VE +V R +GFV + D ++N+ I L+G ++G+ ++V ++ R +R
Sbjct: 252 VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRR 308
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
F++++GN+ + LF ++GKVVE VV + +GFV M + +E AI
Sbjct: 224 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 283
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ + + +++ A R
Sbjct: 284 SALDGQNLEGRAIRVNVAEER 304
>gi|260790117|ref|XP_002590090.1| hypothetical protein BRAFLDRAFT_83361 [Branchiostoma floridae]
gi|229275278|gb|EEN46101.1| hypothetical protein BRAFLDRAFT_83361 [Branchiostoma floridae]
Length = 326
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 172
TTK++VGN+ R ++++LF +G V ECDI++NYGFVH+D+ D N IK L
Sbjct: 20 TTKLYVGNVPQPARKKDLQDLFEKFGKVNECDIIKNYGFVHMDNEQDANDAIKALTNTEW 79
Query: 173 DGKPMKVQISTSRVRQRPG 191
G + V++S S+VR +PG
Sbjct: 80 MGTRITVEMSKSKVRTQPG 98
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 25 RNMPGF-SSVG--TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEE 81
R PG SS G T K+++GNV + ++ LFEK+GKV ECD++KNYGFVHM+N+++
Sbjct: 7 RPFPGRNSSKGEMTTKLYVGNVPQPARKKDLQDLFEKFGKVNECDIIKNYGFVHMDNEQD 66
Query: 82 GRTAIKEL 89
AIK L
Sbjct: 67 ANDAIKAL 74
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + +++L
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKDL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ + +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|115453241|ref|NP_001050221.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|18921322|gb|AAL82527.1|AC084766_13 putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|108708430|gb|ABF96225.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548692|dbj|BAF12135.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|125586437|gb|EAZ27101.1| hypothetical protein OsJ_11032 [Oryza sativa Japonica Group]
gi|215697052|dbj|BAG91046.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766568|dbj|BAG98727.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 24/178 (13%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
++F+GN+ + LFE+ G V +V+ + +GFV M + EE A++
Sbjct: 86 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVE 145
Query: 88 ELNGQIVNEKPLKIEAA-------TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
+ NG I++ + L++ + +S++ P +V+VGNLS + LF G
Sbjct: 146 QFNGYILDGRSLRVNSGPPPPREQSSQRAPRGEANRVYVGNLSWGVDNAALANLFSGEGE 205
Query: 141 VVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
V+E ++ R +GFV S ++ + L+G +DG+ ++V ++ S+ +R
Sbjct: 206 VLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRVTVAESKPPRR 263
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N++ + + F +G ++ C V K Y
Sbjct: 139 CRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVATDENGNSKGY 198
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T V++ N++
Sbjct: 199 GFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANYTNVYIKNINL 258
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKP 176
E RE F +G + + R+ +GFV+ + KC++E+NG G+
Sbjct: 259 EVTEEEFREFFSKWGEITSSTLARDAEGKPRGFGFVNYSTHASAAKCVEEMNGKEWRGQE 318
Query: 177 MKV 179
+ V
Sbjct: 319 LYV 321
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 78/161 (48%), Gaps = 21/161 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF + G V V ++ Y +V+ + +G A++EL
Sbjct: 70 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGEKALEEL 129
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T +F+ NL + + F +G ++ C +
Sbjct: 130 NYTLIKGKPCRI--MWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 187
Query: 147 V-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
+ YGFVH ++ + + IK +NGM+++ K + V
Sbjct: 188 ATDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYV 228
Score = 44.3 bits (103), Expect = 0.031, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 88/242 (36%), Gaps = 74/242 (30%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N+N + E R F K+G++ + ++ +GFV+ ++E+N
Sbjct: 251 VYIKNINLEVTEEEFREFFSKWGEITSSTLARDAEGKPRGFGFVNYSTHASAAKCVEEMN 310
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K +++ NLSD ++R
Sbjct: 311 GKEWRGQELYVGRAQKKHEREEELRKSYEAARLEKQNKYQGVNLYIKNLSDEVDDEKLRA 370
Query: 134 LFVPYGTVVECDIVRN-------------------------------------------- 149
+F +G + ++R+
Sbjct: 371 MFAEFGPITSAKVMRDTPPEPAKDEKNKENNKESEKEGEKKEGEGEGDKKPEVKKPERKL 430
Query: 150 -----YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKSVP 203
+GFV +P D K + E+N MVDGKP+ V ++ + ++ ++ + + +
Sbjct: 431 GKSKGFGFVCFANPDDATKAVAEMNQRMVDGKPLYVALAQRKEVRKSQLEASIQARNQLR 490
Query: 204 VQ 205
+Q
Sbjct: 491 MQ 492
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ ++EL
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|367015628|ref|XP_003682313.1| hypothetical protein TDEL_0F02910 [Torulaspora delbrueckii]
gi|359749975|emb|CCE93102.1| hypothetical protein TDEL_0F02910 [Torulaspora delbrueckii]
Length = 436
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G ++ E ++ F+ G VV V+ + YG+V E+ A+KE+
Sbjct: 189 IFVGRLSWSIDDEWLKNEFDHIGGVVSARVIYERGTDRSRGYGYVDFEDKSYAEKAVKEM 248
Query: 90 NGQIVNEKPLKIEAATSRKG--------------PNTPTTKVFVGNLSDNTRAPEVRELF 135
+G+ ++ +P+ + +TS+ P+ P+ +F+GNLS N + E+F
Sbjct: 249 HGKEIDGRPINCDLSTSKPAGNPRDDRAKKFGDLPSEPSETLFLGNLSFNADRDNIYEMF 308
Query: 136 VPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
+G +V E + + +G+V + D K + L G +D +P+++ ST R
Sbjct: 309 SKFGEIVSVRIPTHPETEQPKGFGYVQYGNVDDAKKALDALQGEYIDNRPVRLDYSTPR 367
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKC 163
P T +FVG LS + ++ F G VV ++ R YG+V D K
Sbjct: 186 PAT-IFVGRLSWSIDDEWLKNEFDHIGGVVSARVIYERGTDRSRGYGYVDFEDKSYAEKA 244
Query: 164 IKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
+KE++G +DG+P+ +STS+ P D
Sbjct: 245 VKEMHGKEIDGRPINCDLSTSKPAGNPRDDRA 276
>gi|308499747|ref|XP_003112059.1| CRE-PAB-1 protein [Caenorhabditis remanei]
gi|308268540|gb|EFP12493.1| CRE-PAB-1 protein [Caenorhabditis remanei]
Length = 695
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 32/186 (17%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------------------K 69
P G IFI N++ + I F +G ++ C V K
Sbjct: 128 PAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVTFPIEHLKTVVAIDDEGSSK 187
Query: 70 NYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNL 122
YGFVH E +E + AI+++NG ++ K + + R N T V+V N
Sbjct: 188 GYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKKFTNVYVKNF 247
Query: 123 SDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGK 175
D+ + +LF YG + CD++ + +GFV P + ++ LN VDG
Sbjct: 248 GDHYNKETLEKLFAKYGAITSCDVMTSDGKSKGFGFVAFAQPEEAEAAVQALNDSAVDGS 307
Query: 176 PMKVQI 181
+K+ +
Sbjct: 308 DLKLHV 313
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 47/199 (23%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N + E + LF KYG + CDV+ K +GFV EE A++ LN
Sbjct: 242 VYVKNFGDHYNKETLEKLFAKYGAITSCDVMTSDGKSKGFGFVAFAQPEEAEAAVQALND 301
Query: 92 QIVNEKPLKIEAATSRKGPNTPT-------------------TKVFVGNLSDNTRAPEVR 132
V+ LK+ ++K ++V NL ++ ++
Sbjct: 302 SAVDGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALK 361
Query: 133 ELFVPYGTVVECDI---------------------VRNYGFVHIDSP-DINKCIKELNGM 170
+ F +G + + + +GFV + P + + E+N
Sbjct: 362 KQFENFGNITSAKVGLVPLEFFISLFQVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSK 421
Query: 171 MVDGKPMKVQISTSRVRQR 189
MV KP+ V ++ + +R
Sbjct: 422 MVCSKPLYVALAQRKEDRR 440
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KN 70
CR M P G+ IFI N++ + + F +G ++ C + K
Sbjct: 111 CRIMWSQRDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKG 170
Query: 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLS 123
+GFVH E+DE R AI +NG ++N + + + SRK + T V++ N+S
Sbjct: 171 FGFVHFESDEAAREAIDAINGMLLNGQEVYVAPHVSRKDRQSKLEEAKANFTNVYIKNIS 230
Query: 124 DNTRAPEVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGK 175
T E E F V + +R +GFV+ ++ K ++ELNG+ G+
Sbjct: 231 LETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYETHAGAAKAVEELNGVEFHGQ 290
Query: 176 PMKV 179
+ V
Sbjct: 291 QLHV 294
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 36/210 (17%)
Query: 1 MSRFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYG 60
+SR D+Q K+ N N+ +N+ + F+ F V P TSV L + + G
Sbjct: 205 VSRKDRQS--KLEEAKANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEK---DSEG 259
Query: 61 KVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI-----------------EA 103
K+ + +GFV+ E A++ELNG + + L + E
Sbjct: 260 KL------RGFGFVNYETHAGAAKAVEELNGVEFHGQQLHVGRAQKKYERQQELRRQYEQ 313
Query: 104 ATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHID 156
+ K +F+ NL D+ +RE F P+GT+ ++ + +GFV
Sbjct: 314 SKLEKMEKYQGVNLFIKNLDDSIDDERLREEFSPFGTITSVKVMTTENGKSKGFGFVCFS 373
Query: 157 SP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+P + K I E N +V GKP+ V I+ +
Sbjct: 374 TPEEATKAITEKNQQIVAGKPLYVAIAQRK 403
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ ++EL
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ ++EL
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|322795213|gb|EFZ18035.1| hypothetical protein SINV_11488 [Solenopsis invicta]
Length = 455
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S +L+ LF + G V C +++ Y FV N + TA+ +N +
Sbjct: 82 LYVGNLDTTVSEDLLCALFSQIGAVKGCKIIREPGNDPYAFVEFTNHQCAATALAAMNKR 141
Query: 93 IVNEKPLKIEAATSRKG-PNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
EK +K+ ATS P T+ +FVG+LS ++E F P+G + C IVR
Sbjct: 142 SFLEKEMKVNWATSPGNQPKLDTSNHHHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVR 201
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQIST 183
+ Y FV + + I +NG + + ++ ST
Sbjct: 202 DPQTLKSKGYAFVSFVKKSEAEAAINAMNGQWLGSRSIRTNWST 245
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 23/152 (15%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + IF+G+++P + ++ F +G++ C +V K Y FV
Sbjct: 158 NQPKLDTSNHHHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 217
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAAT--------------SRKGPNTPTTKVFVGNLS 123
E AI +NGQ + + ++ +T + PN ++ G +
Sbjct: 218 KKSEAEAAINAMNGQWLGSRSIRTNWSTRKPPPPRSERPRHSNNSKPNYEEV-LYCGGFT 276
Query: 124 DNTRAPEVRELFVPYGTVVECDIVRNYGFVHI 155
+ +++ F P+GT+ + + ++ G+ I
Sbjct: 277 NGITDELIKKTFSPFGTIQDIRVFKDKGYAFI 308
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
+++ N+N T+ E + LF K+G +V + +K +GFV+ E E+ A++ LN
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+N + L + EA K +FV NL D+ ++ E
Sbjct: 281 DSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEE 340
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F PYGT+ ++R +GFV +P + K I E N +V GKP+ V I+ +
Sbjct: 341 EFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G+ IFI N++P + + F +G ++ + K +
Sbjct: 109 CRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGF 168
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E + + AI LNG ++N + + + SRK ++ T ++V N++
Sbjct: 169 GFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINS 228
Query: 125 NTRAPEVRELFVPYGTVVECDI-------VRNYGFVHID-SPDINKCIKELNGMMVDGKP 176
T + +ELF +G +V + ++ +GFV+ + D K ++ LN ++G+
Sbjct: 229 ETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEK 288
Query: 177 MKV 179
+ V
Sbjct: 289 LYV 291
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
+++ N+N T+ E + LF K+G +V + +K +GFV+ E E+ A++ LN
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+N + L + EA K +FV NL D+ ++ E
Sbjct: 281 DSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEE 340
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F PYGT+ ++R +GFV +P + K I E N +V GKP+ V I+ +
Sbjct: 341 EFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G+ IFI N++P + + F +G ++ + K +
Sbjct: 109 CRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGF 168
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E + + AI LNG ++N + + + SRK ++ T ++V N++
Sbjct: 169 GFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINS 228
Query: 125 NTRAPEVRELFVPYGTVVECDI-------VRNYGFVHID-SPDINKCIKELNGMMVDGKP 176
T + +ELF +G +V + ++ +GFV+ + D K ++ LN ++G+
Sbjct: 229 ETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEK 288
Query: 177 MKV 179
+ V
Sbjct: 289 LYV 291
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
+++ N+N T+ E + LF K+G +V + +K +GFV+ E E+ A++ LN
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+N + L + EA K +FV NL D+ ++ E
Sbjct: 281 DSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEE 340
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F PYGT+ ++R +GFV +P + K I E N +V GKP+ V I+ +
Sbjct: 341 EFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G+ IFI N++P + + F +G ++ + K +
Sbjct: 109 CRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGF 168
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E + + AI LNG ++N + + + SRK ++ T ++V N++
Sbjct: 169 GFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINS 228
Query: 125 NTRAPEVRELFVPYGTVVECDI-------VRNYGFVHID-SPDINKCIKELNGMMVDGKP 176
T + +ELF +G +V + ++ +GFV+ + D K ++ LN ++G+
Sbjct: 229 ETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEK 288
Query: 177 MKV 179
+ V
Sbjct: 289 LYV 291
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ ++EL
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
+++ N+N T+ E + +F ++G +V + +K +GFV+ EN E+ A++ LN
Sbjct: 221 LYVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALN 280
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+N + L + EA K +FV NL D+ ++ E
Sbjct: 281 ESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEE 340
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F PYGT+ ++R+ +GFV +P + K I E N +V GKP+ V I+ +
Sbjct: 341 EFAPYGTITSAKVMRSENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400
Query: 186 VRQR 189
+R
Sbjct: 401 DVRR 404
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G+ IFI N++P + + F +G ++ + K +
Sbjct: 109 CRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGF 168
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E + + AI LNG ++N + + + SRK ++ T ++V N++
Sbjct: 169 GFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINS 228
Query: 125 NTRAPEVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGKP 176
T + +E+F +G +V + ++ +GFV+ ++ D K ++ LN ++G+
Sbjct: 229 ETTDEKFQEMFAQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEK 288
Query: 177 MKV 179
+ V
Sbjct: 289 LYV 291
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
+++ N+N T+ E + LF K+G +V + +K +GFV+ E E+ A++ LN
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+N + L + EA K +FV NL D+ ++ E
Sbjct: 281 DSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEE 340
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F PYGT+ ++R +GFV +P + K I E N +V GKP+ V I+ +
Sbjct: 341 EFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G+ IFI N++P + + F +G ++ + K +
Sbjct: 109 CRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGF 168
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E + + AI LNG ++N + + + SRK ++ T ++V N++
Sbjct: 169 GFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINS 228
Query: 125 NTRAPEVRELFVPYGTVVECDI-------VRNYGFVHID-SPDINKCIKELNGMMVDGKP 176
T + +ELF +G +V + ++ +GFV+ + D K ++ LN ++G+
Sbjct: 229 ETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEK 288
Query: 177 MKV 179
+ V
Sbjct: 289 LYV 291
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 32/177 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N S E+++ +FEKYG++ V+ + +GFV E+ + A ELN
Sbjct: 185 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 244
Query: 91 G-QIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G ++V KPL K E S + ++V NL D +R
Sbjct: 245 GKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLR 304
Query: 133 ELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
+ F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 305 KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 361
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 26/185 (14%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P G +FI N++ + + F +G ++ C V K Y
Sbjct: 74 RIMWSQRD-PSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVAQDETGASKGY 132
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E +E +I+++NG ++N K + + RK T V+V N +
Sbjct: 133 GFVHFETEEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGE 192
Query: 125 NTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK--CIKELNGM-MVDG 174
+ ++++F YG + ++ R +GFV + PD + CI ELNG +V+G
Sbjct: 193 DFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACI-ELNGKELVEG 251
Query: 175 KPMKV 179
KP+ V
Sbjct: 252 KPLYV 256
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 289 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 348
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
+IV KPL + A ++ T ++ ++ + R ++ ++F P G
Sbjct: 349 RIVGTKPLYVALAQRKEDRKAHLTSQYMQRMA-SMRMQQMGQIFQPSGA 396
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + + F +G ++ C VV K YGFVH E EE
Sbjct: 91 PSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEE 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG +N+ + + SR+ T V++ NL ++ +++L
Sbjct: 151 AERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K ++E+NG ++GK + V + +V
Sbjct: 211 FGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 41/186 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N+ E ++ LF ++G + V+ K +GFV E E+ R A++E+N
Sbjct: 193 VYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMN 252
Query: 91 GQIVNEKPL---------------------------KIEAATSRKGPNTPTTKVFVGNLS 123
G+ +N K + KIE + ++V NL
Sbjct: 253 GKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNLD 312
Query: 124 DNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKP 176
D +R+ F P+GT+ + + +GFV SP + K + E+NG +V KP
Sbjct: 313 DGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKP 372
Query: 177 MKVQIS 182
+ V ++
Sbjct: 373 LYVALA 378
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V K +GFV + EE A+ E+NG
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNG 365
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 129
+IV KPL + A ++ + ++ ++ + P
Sbjct: 366 KIVATKPLYVALAQRKEERQAHLSNQYMQRMASTSAGP 403
>gi|403335220|gb|EJY66784.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 307
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 17/165 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++GN++ + EL+ LF + G +V + ++ YGFV + +E+ AIK +
Sbjct: 22 LYVGNLDTKVNEELVWELFLQCGAIVNVHIPRDKVTNEHSGYGFVEFKTEEDADYAIKIM 81
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN 149
+ + KP+K+ A+ K VFVGNL ++ +R++F +G V+ I+R+
Sbjct: 82 HMVKLFGKPIKVNKASQDKRTQEVGANVFVGNLHEDVDEKMLRDVFSSFGIVLSTKIMRD 141
Query: 150 --------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
YGFV D+ + I+ +NG + GKP+ V + +
Sbjct: 142 PETQVSKRYGFVSYDNFESSDASIQAMNGQYLCGKPIDVSYAYKK 186
>gi|273068254|gb|ACZ97550.1| apoptosis-promoting RNA-binding protein [Ornithodoros moubata]
Length = 204
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 22/174 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 24 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFETEE 83
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVRE 133
AI ++NG ++N K + + RK T V++ N D ++
Sbjct: 84 AANNAISKVNGMLLNGKKVFVGRFIPRKERERLLGDKARRFTNVYIKNFGDELDDEKLVV 143
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
+F YG V ++ R +GFV + P+ K ++ELNG V GKP+ V
Sbjct: 144 IFDKYGKVTSAKVMVDENGKNRGFGFVSFEDPECAEKAVEELNGKDVGGKPLYV 197
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E + +F+KYGKV V+ + +GFV E+ E A++ELN
Sbjct: 127 VYIKNFGDELDDEKLVVIFDKYGKVTSAKVMVDENGKNRGFGFVSFEDPECAEKAVEELN 186
Query: 91 GQIVNEKPLKIEAATSR 107
G+ V KPL + A +
Sbjct: 187 GKDVGGKPLYVGRAQKK 203
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
+++ N+N T+ E + LF K+G +V + +K +GFV+ E E+ A++ LN
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+N + L + EA K +FV NL D+ ++ E
Sbjct: 281 DSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEE 340
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F PYGT+ ++R +GFV +P + K I E N +V GKP+ V I+ +
Sbjct: 341 EFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400
Query: 186 VRQR 189
+R
Sbjct: 401 DVRR 404
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G+ IFI N++P + + F +G ++ + K +
Sbjct: 109 CRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGF 168
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E + + AI LNG ++N + + + SRK ++ T ++V N++
Sbjct: 169 GFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINS 228
Query: 125 NTRAPEVRELFVPYGTVVECDI-------VRNYGFVHID-SPDINKCIKELNGMMVDGKP 176
T + +ELF +G +V + ++ +GFV+ + D K ++ LN ++G+
Sbjct: 229 ETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEK 288
Query: 177 MKV 179
+ V
Sbjct: 289 LYV 291
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++E+
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEI 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGK 175
F YG + ++ + +GFV + D + + E+NG ++GK
Sbjct: 211 FCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGK 259
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ +F KYG + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV KPL + A ++ T ++ ++
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTSQYMQRMA 387
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 77/184 (41%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 126 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 185
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + + ++K + T V+V NL
Sbjct: 186 GFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDT 245
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGK 175
E RELF YG + I R+ +GFV+ + ++ELN G+
Sbjct: 246 EVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKHESAAAAVEELNDKEYKGQ 305
Query: 176 PMKV 179
+ V
Sbjct: 306 KLYV 309
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ N +G A+++L
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 117 NYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 174
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + IK +NGM+++ K
Sbjct: 175 AQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEK 211
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 25/137 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++ N++ S E R LFEKYG++ + ++ +GFV+ E A++EL
Sbjct: 238 VYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKHESAAAAVEEL 297
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N + + L + EAA K ++V NL+D+ ++R
Sbjct: 298 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLR 357
Query: 133 ELFVPYGTVVECDIVRN 149
+LF+ +G + ++R+
Sbjct: 358 DLFISFGNITSARVMRD 374
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI ++NG ++N++ + + SRK T V++ N ++ ++E
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEW 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F YG + ++ R +GFV + D K + ++NG ++GK + V + +V
Sbjct: 211 FGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ F +YG + V+ + +GFV E E+ + A+ ++N
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMN 252
Query: 91 GQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N K + K+E T RK ++ +V NL D +R+
Sbjct: 253 GKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+G++ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 40/185 (21%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N S E +R +FEK+GK+ V+ K +GFV E+ E TA+ LN
Sbjct: 194 VYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKSKGFGFVAFESPEAAETAVDALN 253
Query: 91 G-QIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G ++V KPL + EA + ++V NL D +R
Sbjct: 254 GKELVEGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDERLR 313
Query: 133 ELFVPYGTVVECDIV--------------RNYGFVHIDSP-DINKCIKELNGMMVDGKPM 177
+ F P+GT+ ++ + +GFV SP + K + E+NG +V KP+
Sbjct: 314 KEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 373
Query: 178 KVQIS 182
V ++
Sbjct: 374 YVALA 378
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 91 PSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDENGTSKGYGFVHFETEE 150
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I+++NG ++N K + + RK T V+V N ++ ++R
Sbjct: 151 AANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDLSEEQLRN 210
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGM-MVDGKPMKV 179
+F +G + ++ + +GFV +SP+ + + LNG +V+GKP+ V
Sbjct: 211 MFEKFGKITSYKVMSKDDGKSKGFGFVAFESPEAAETAVDALNGKELVEGKPLYV 265
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------------KNYGFVHMENDEEGR 83
+++ N++ E +R F +G + V+ K +GFV + EE
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEAT 357
Query: 84 TAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
A+ E+NG+IV KPL + A ++ T ++ ++ N R ++ F+P G
Sbjct: 358 KAVTEMNGRIVGSKPLYVALAQRKEDRKAHLTSQYMQRMA-NMRMHQMGHQFMPPG 412
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + + F +G ++ C VV K YGFVH E EE
Sbjct: 91 PSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEE 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG +N+ + + SR+ T V++ NL ++ +++L
Sbjct: 151 AERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K ++E+NG ++GK + V + +V
Sbjct: 211 FGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 41/186 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N+ E ++ LF ++G + V+ K +GFV E E+ R A++E+N
Sbjct: 193 VYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMN 252
Query: 91 GQIVNEKPL---------------------------KIEAATSRKGPNTPTTKVFVGNLS 123
G+ +N K + KIE + ++V NL
Sbjct: 253 GKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNLD 312
Query: 124 DNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKP 176
D +R+ F P+GT+ + + +GFV SP + K + E+NG +V KP
Sbjct: 313 DGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKP 372
Query: 177 MKVQIS 182
+ V ++
Sbjct: 373 LYVALA 378
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V K +GFV + EE A+ E+NG
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNG 365
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 129
+IV KPL + A ++ + ++ ++ + P
Sbjct: 366 KIVATKPLYVALAQRKEERQAHLSNQYMQRMASTSAGP 403
>gi|383863609|ref|XP_003707272.1| PREDICTED: nucleolysin TIAR-like [Megachile rotundata]
Length = 392
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 18/164 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S EL+ LF + G V C +++ Y FV N + TA+ +N +
Sbjct: 10 LYVGNLDSSVSEELLCALFSQIGAVKGCKIIREPGNDPYAFVEFTNHQCAATALAAMNKR 69
Query: 93 IVNEKPLKIEAATSRKG-PNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
K +K+ ATS P T+ +FVG+LS ++E F P+G + C IVR
Sbjct: 70 SFLNKEMKVNWATSPGNQPKLDTSNHHHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQIST 183
+ Y FV + + I +NG + + ++ ST
Sbjct: 130 DPQTMKSKGYAFVSFVKKSEAEAAIAAMNGQWLGSRSIRTNWST 173
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 31/161 (19%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + IF+G+++P + ++ F +G++ C +V K Y FV
Sbjct: 86 NQPKLDTSNHHHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTMKSKGYAFVSFV 145
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAAT--------------SRKGPN--------TPTT 115
E AI +NGQ + + ++ +T + PN +PT
Sbjct: 146 KKSEAEAAIAAMNGQWLGSRSIRTNWSTRKPPPPRSERPRHSNNSKPNYEEVYNQSSPTN 205
Query: 116 -KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI 155
V+ G ++ + + F P+GT+ + + ++ G+ I
Sbjct: 206 CTVYCGGFTNGITDELINKTFSPFGTIQDIRVFKDKGYAFI 246
>gi|224119514|ref|XP_002318093.1| predicted protein [Populus trichocarpa]
gi|222858766|gb|EEE96313.1| predicted protein [Populus trichocarpa]
Length = 327
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 24/176 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
KIF+GN+ E + LFE+ G V E D + +GFV M EE A++
Sbjct: 150 KIFVGNLPYDVDSEKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVTMSTVEESEKAVEM 209
Query: 89 LNGQIVNEKPLKIEAATSR-----KGP--NTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
L+ ++ + L + A R + P + P +++VGNL + + + ++F +G V
Sbjct: 210 LHRYDLDGRFLTVNKAAPRGSRPERPPRVSEPGYRIYVGNLPWDVDSGRLEQIFSEHGKV 269
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
V +V R +GFV + + ++N I L+G +DG+P++V ++ R R+
Sbjct: 270 VSARVVFDRETNRSRGFGFVTMSTESELNDAIAALDGQNLDGRPIRVNVAEERPRR 325
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
++I++GN+ + +F ++GKVV VV + +GFV M + E AI
Sbjct: 243 YRIYVGNLPWDVDSGRLEQIFSEHGKVVSARVVFDRETNRSRGFGFVTMSTESELNDAIA 302
Query: 88 ELNGQIVNEKPLKIEAATSR 107
L+GQ ++ +P+++ A R
Sbjct: 303 ALDGQNLDGRPIRVNVAEER 322
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
+++ N+N T+ E + LF K+G +V + +K +GFV+ E E+ A++ LN
Sbjct: 110 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 169
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+N + L + EA K +FV NL D+ ++ E
Sbjct: 170 DSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEE 229
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F PYGT+ ++R +GFV +P + K I E N +V GKP+ V I+ +
Sbjct: 230 EFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 289
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 22/174 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G+ IFI N++P + + F +G ++ + K +GFVH E +
Sbjct: 7 PSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEG 66
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+ AI LNG ++N + + + SRK ++ T ++V N++ T + +E
Sbjct: 67 AAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQE 126
Query: 134 LFVPYGTVVECDI-------VRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
LF +G +V + ++ +GFV+ + D K ++ LN ++G+ + V
Sbjct: 127 LFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV 180
>gi|34194032|gb|AAH56530.1| Hnrpa0 protein, partial [Danio rerio]
Length = 303
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 84/170 (49%), Gaps = 22/170 (12%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+F+G +N T+ + +R FE++G + +C VV+N +GFV EE A+
Sbjct: 21 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAA 80
Query: 89 LNGQIVNEKPLKIEAATSRKGPNTPTT-----KVFVGNLSDNTRAPEVRELFVPYGTVVE 143
+V+ K ++++ A +R+ P K+FVG L D+ ++ E F +G + +
Sbjct: 81 -RPHVVDGKNVEVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEK 139
Query: 144 CDIV--------RNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+++ R +GFVH + D L M++G ++V+ + ++
Sbjct: 140 SEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKKALTK 189
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 136 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGY 195
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +N ++NEK + + +K + T ++V N+S
Sbjct: 196 GFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISL 255
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDI-NKCIKELNGMMVDGKP 176
E R+LF YG V + R+ +GFV+ + + K ++ELNG G+
Sbjct: 256 EATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQD 315
Query: 177 MKV 179
+ V
Sbjct: 316 LYV 318
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 77/225 (34%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ + E R LF KYG V + ++ +GFV+ E A++ELN
Sbjct: 248 IYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELN 307
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K +++ NL+D+ ++R+
Sbjct: 308 GKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLRQ 367
Query: 134 LFVPYGTVVECDIVRN-------------------------------------------- 149
+F YG + ++R+
Sbjct: 368 MFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTEKKGD 427
Query: 150 --------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+GFV +P D K + E+N M++GKP+ V ++ +
Sbjct: 428 RRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRK 472
>gi|110756942|ref|XP_395357.3| PREDICTED: nucleolysin TIAR [Apis mellifera]
gi|340713958|ref|XP_003395500.1| PREDICTED: nucleolysin TIAR-like [Bombus terrestris]
gi|350421173|ref|XP_003492759.1| PREDICTED: nucleolysin TIAR-like [Bombus impatiens]
gi|380025693|ref|XP_003696603.1| PREDICTED: nucleolysin TIAR-like [Apis florea]
Length = 392
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 18/164 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S EL+ LF + G V C +++ Y FV N + TA+ +N +
Sbjct: 10 LYVGNLDTSVSEELLCALFSQIGAVKGCKIIREPGNDPYAFVEFTNHQCAATALAAMNKR 69
Query: 93 IVNEKPLKIEAATSRKG-PNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
K +K+ ATS P T+ +FVG+LS ++E F P+G + C IVR
Sbjct: 70 SFLNKEMKVNWATSPGNQPKLDTSNHHHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQIST 183
+ Y FV + + I +NG + + ++ ST
Sbjct: 130 DPQTMKSKGYAFVSFVKKSEAEAAIAAMNGQWLGSRSIRTNWST 173
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 31/161 (19%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + IF+G+++P + ++ F +G++ C +V K Y FV
Sbjct: 86 NQPKLDTSNHHHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTMKSKGYAFVSFV 145
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAAT--------------SRKGPN--------TPTT 115
E AI +NGQ + + ++ +T + PN +PT
Sbjct: 146 KKSEAEAAIAAMNGQWLGSRSIRTNWSTRKPPPPRSERPRHSNNSKPNYEEVYNQSSPTN 205
Query: 116 -KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI 155
V+ G ++ + + F P+GT+ + + ++ G+ I
Sbjct: 206 CTVYCGGFTNGITDDLITKTFSPFGTIQDIRVFKDKGYAFI 246
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C V K YGFV E +E
Sbjct: 119 PSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVATEMSGESKGYGFVQFELEE 178
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVRELF 135
+ AI +LNG ++N+K + + ++ N V+V NLS++T ++E+F
Sbjct: 179 AAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNNVYVKNLSESTTEDNLKEIF 238
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
+G + ++R +GFV+ ++P D + +++LNG D K V
Sbjct: 239 GKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYV 290
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 87/185 (47%), Gaps = 33/185 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ + ++ +F K+G + V++ +GFV+ EN ++ A+++LN
Sbjct: 220 VYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLN 279
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPE-VR 132
G+ ++K K E T +++ NL D+ E ++
Sbjct: 280 GKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDDEKLK 339
Query: 133 ELFVPYGTVVECDIVRNY-------GFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTS 184
E+F +GT+ C ++R+ GFV S D ++ + +NG M+ KP+ V ++
Sbjct: 340 EIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVALAQR 399
Query: 185 RVRQR 189
+ +R
Sbjct: 400 KEERR 404
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 77/184 (41%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 132 CRIMWSQRDPALRKTGHGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAVDELGNSKGY 191
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + + +K + T ++V N+
Sbjct: 192 GFVHYETAEAASQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIET 251
Query: 125 NTRAPEVRELFVPYGTVVECDIV--------RNYGFV-HIDSPDINKCIKELNGMMVDGK 175
E RELF YG + + R +GFV +I+ D K + ELN G+
Sbjct: 252 EVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVDELNDSDFHGQ 311
Query: 176 PMKV 179
+ V
Sbjct: 312 KLYV 315
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 82/177 (46%), Gaps = 21/177 (11%)
Query: 18 NQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------- 70
N + P + + +++G ++P + ++ LF G+V V ++
Sbjct: 43 NDMPTPTSAAPSTAHPNSASLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSL 102
Query: 71 -YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNT 126
Y +V+ + +G A++ELN ++ +P +I S++ P T VF+ NL
Sbjct: 103 GYAYVNYNSANDGERALEELNYTLIKGRPCRI--MWSQRDPALRKTGHGNVFIKNLDGAI 160
Query: 127 RAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
+ + F +G ++ C + + YGFVH ++ + ++ IK +NGM+++ K
Sbjct: 161 DNKALHDTFAAFGNILSCKVAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEK 217
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 25/164 (15%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
I++ N+ + + R LFEKYG++ + + +GFV+ N E+ A+ EL
Sbjct: 244 IYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVDEL 303
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N + + L + EAA K ++V NL+D E+R
Sbjct: 304 NDSDFHGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYQGVNLYVKNLADEVDDEELR 363
Query: 133 ELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDGKP 176
++F YG + ++R+ + D + + VDG+P
Sbjct: 364 KIFEAYGAITSAKVMRDVTPLDKAETDAKENKTDDKEKQVDGEP 407
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN----- 149
N+ P AA S PN+ + ++VG L + + ELF G V + R+
Sbjct: 43 NDMPTPTSAAPSTAHPNSAS--LYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRR 100
Query: 150 ---YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
Y +V+ +S D + ++ELN ++ G+P ++ S
Sbjct: 101 SLGYAYVNYNSANDGERALEELNYTLIKGRPCRIMWS 137
>gi|47550715|ref|NP_999871.1| heterogeneous nuclear ribonucleoprotein A0b [Danio rerio]
gi|42542945|gb|AAH66434.1| Heterogeneous nuclear ribonucleoprotein A0 [Danio rerio]
Length = 314
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 84/170 (49%), Gaps = 22/170 (12%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+F+G +N T+ + +R FE++G + +C VV+N +GFV EE A+
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMA- 67
Query: 89 LNGQIVNEKPLKIEAATSRKGPNTPTT-----KVFVGNLSDNTRAPEVRELFVPYGTVVE 143
+V+ K ++++ A +R+ P K+FVG L D+ ++ E F +G + +
Sbjct: 68 ARPHVVDGKNVEVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEK 127
Query: 144 CDIV--------RNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+++ R +GFVH + D L M++G ++V+ + ++
Sbjct: 128 SEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKKALTK 177
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 135 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGY 194
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T ++V N+++
Sbjct: 195 GFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIAN 254
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E R+LF +G V + R+ +GFV+ + + K + +LNG G+
Sbjct: 255 EVTDDEFRDLFTAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQD 314
Query: 177 MKV 179
+ V
Sbjct: 315 LYV 317
Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N+ + + R LF +G V + ++ +GFV+ E A+ +LN
Sbjct: 247 IYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLN 306
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K +++ NL D ++R+
Sbjct: 307 GKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKASKYQGVNLYIKNLDDEVDDEKLRQ 366
Query: 134 LFVPYGTVVECDIVRN 149
LF +G + ++R+
Sbjct: 367 LFADFGPITSAKVMRD 382
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 15/167 (8%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +F+ N+ P + + +F +G ++ C V K YGFV E +E
Sbjct: 115 PSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKVATDSAGQSKGYGFVQYETEE 174
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
AI LNG + N + + + R+ T V++ NL ++R+ F P+G
Sbjct: 175 SAEAAINGLNGMLANNRKMFVGLHMRRRDREVKFTNVYIKNLPTEFSEDDLRQEFAPFGE 234
Query: 141 VVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKPMKV 179
+ ++R+ +GFV+ P+ + +++ NG + K + V
Sbjct: 235 ITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKANGKAIGDKTLYV 281
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ G + E ++ LFE++G+V C V+ K GFV E G+ AI +N
Sbjct: 314 LYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMN 373
Query: 91 GQIVNEKPLKIEAATSRK 108
G+IV +KPL + A ++
Sbjct: 374 GRIVGKKPLYVGLAQPKE 391
Score = 42.7 bits (99), Expect = 0.084, Method: Composition-based stats.
Identities = 36/184 (19%), Positives = 82/184 (44%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N+ S + +R F +G++ V+++ +GFV+ + E A+++ N
Sbjct: 211 VYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKAN 270
Query: 91 GQIVNEKPLKIEAATSR------------KGPNTPTTK-----VFVGNLSDNTRAPEVRE 133
G+ + +K L + A + +G + K +++ N+ D +++
Sbjct: 271 GKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLKK 330
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSR 185
LF +G V C ++ + GFV + + + I +NG +V KP+ V ++ +
Sbjct: 331 LFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPK 390
Query: 186 VRQR 189
++
Sbjct: 391 EERK 394
>gi|367007988|ref|XP_003688723.1| hypothetical protein TPHA_0P01310 [Tetrapisispora phaffii CBS 4417]
gi|357527033|emb|CCE66289.1| hypothetical protein TPHA_0P01310 [Tetrapisispora phaffii CBS 4417]
Length = 518
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YG 72
N S R + S + K+FIG +N T+ + +R F KYG VVE ++K+ +G
Sbjct: 149 NDSQRKVKADLSKDSCKMFIGGLNWETTEDTLRDYFNKYGSVVELKIMKDNNTGRSRGFG 208
Query: 73 FVHMENDEEGRTAIKE---LNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 129
F+ EN +K L+G++++ K + G K+FVG + + R
Sbjct: 209 FLTFENASSVDEVVKTQHILDGKVIDPKRAIPREEQDKTG------KIFVGGIGADVRPK 262
Query: 130 EVRELFVPYGTVVECDIV--------RNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQI 181
E E F YGT+++ ++ R +GFV DSPD + + + GK ++++
Sbjct: 263 EFEEFFAQYGTIIDAQLMLDKDTGRSRGFGFVTYDSPDAVDRVCQSKYIEFKGKQIEIKR 322
Query: 182 STSRVRQR 189
+ R Q+
Sbjct: 323 AEPRNNQK 330
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 30/168 (17%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 91 PSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEE 150
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
+I +NG ++N K L T V+V N ++ +++E+F YGT
Sbjct: 151 AANKSIDRVNGMLLNGKKL--------------FTNVYVKNFGEDMTDDKLKEMFEKYGT 196
Query: 141 VVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMKV 179
+ ++ R +GFV + PD + + ELNG V +GK M V
Sbjct: 197 ITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 244
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N + + ++ +FEKYG + V+ + +GFV E+ + A+ ELN
Sbjct: 173 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 232
Query: 91 GQIVNE-----------------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTR 127
G+ V E + LK+E +G N ++V NL D+
Sbjct: 233 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-----LYVKNLDDSID 287
Query: 128 APEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+R+ F P+GT+ ++ + +GFV +P + K + E+NG ++ KP+ V
Sbjct: 288 DERLRKEFAPFGTITSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVA 347
Query: 181 ISTSR 185
++ +
Sbjct: 348 LAQRK 352
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 25/144 (17%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q +L +++RY +++ N++ E +R F +G +
Sbjct: 260 KFEQLKLERLNRYQG------------------VNLYVKNLDDSIDDERLRKEFAPFGTI 301
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK 116
V+ K +GFV EE A+ E+NG+I+ KPL + A ++
Sbjct: 302 TSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLAS 361
Query: 117 VFVGNLSDNTRAPEVRELFVPYGT 140
++ L+ N R ++ ++F P G
Sbjct: 362 QYMQRLA-NMRMQQMGQIFQPGGA 384
>gi|159164093|pdb|2DGT|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Rna- Binding Protein 30
Length = 92
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMV 172
+TK+ VGN+S E+R F YG V+ECDIV++Y FVH++ + D + I+ L+
Sbjct: 10 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 69
Query: 173 DGKPMKVQISTSRVRQRPG 191
GK M VQ+STSR+R G
Sbjct: 70 QGKRMHVQLSTSRLRTASG 88
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+ +GN++P + + +R FE+YG V+ECD+VK+Y FVHME E+ AI+ L+
Sbjct: 12 KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 71
Query: 97 KPLKIEAATSR----KGPNT 112
K + ++ +TSR GP++
Sbjct: 72 KRMHVQLSTSRLRTASGPSS 91
>gi|2330647|emb|CAA74889.1| ribonucleoprotein [Pisum sativum]
gi|10179830|gb|AAG13900.1| 33 kDa ribonucleoprotein [Pisum sativum]
Length = 291
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 27/179 (15%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ E + LFE G V E D + +GFV M EE +
Sbjct: 110 KLFVGNLPYDVDSEKLAMLFEPAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEAGAAK 169
Query: 89 LNGQIVNEKPLKIEAATSRKGPNT----------PTTKVFVGNLSDNTRAPEVRELFVPY 138
N N +PL + A R P +V+VGNLS + ++F +
Sbjct: 170 FNRYDYNGRPLTVNKAAPRGSRPEREERPPRTFEPVLRVYVGNLSWELDDSRLEQVFSEH 229
Query: 139 GTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
G VV +V R +GFV + D ++N I L+G +++G+ +KV ++ R R+
Sbjct: 230 GKVVSARVVYDRETGRSRGFGFVTMSDEKEMNDAIAALDGQILEGRTIKVSVAEDRPRR 288
>gi|224133740|ref|XP_002321649.1| predicted protein [Populus trichocarpa]
gi|222868645|gb|EEF05776.1| predicted protein [Populus trichocarpa]
Length = 295
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 24/176 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKV--------VECDVVKNYGFVHMENDEEGRTAIKE 88
KI++GN+ + E + LF++ G V E D + +GFV M EE AI+
Sbjct: 117 KIYVGNLPYDVTSEKLAMLFDQAGTVEISEVIYNTETDTSRGFGFVTMSTVEESDKAIEM 176
Query: 89 LNGQIVNEKPLKIEAATSR-----KGP--NTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N ++ + L + A R + P + P+ +++VGNL + + E+F +G V
Sbjct: 177 FNRYNLDGRLLTVNKAAPRGSRPERPPRVSEPSYRIYVGNLPWGVDSGRLEEVFSEHGKV 236
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
V +V R +GFV + S ++N I L+G +DG+ ++V ++ R R+
Sbjct: 237 VSAQVVSDWETGRSRGFGFVTMSSESELNDAIAALDGQELDGRAIRVNVAAERPRR 292
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY--------GFVHMENDEEGRTAI 86
+++I++GN+ G + +F ++GKVV VV ++ GFV M ++ E AI
Sbjct: 209 SYRIYVGNLPWGVDSGRLEEVFSEHGKVVSAQVVSDWETGRSRGFGFVTMSSESELNDAI 268
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ ++ + +++ A R
Sbjct: 269 AALDGQELDGRAIRVNVAAER 289
>gi|162457883|ref|NP_001105264.1| arginine/serine-rich splicing factor 2 variant 2 [Zea mays]
gi|47680309|gb|AAT37138.1| arginine/serine-rich splicing factor 2 variant 2 [Zea mays]
gi|47680375|gb|AAT37129.1| arginine/serine-rich splicing factor 2 variant 2 [Zea mays]
Length = 193
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEK 97
+F+GN++ T + LF +YG+V D+ Y FV+ E++ +G AI+ L+G
Sbjct: 4 VFVGNLDYDTRHSELDRLFYRYGRVERIDIKSGYAFVYFEDERDGNDAIRALDGYPFGPG 63
Query: 98 PLKIEAATSRKG----PNT-PTTKVFVGNLSD-NTRAPEVRELFVPYGTVVECDIVRNYG 151
++ SR G NT PT +FV N NTR ++ F P+G + I +N+
Sbjct: 64 RRRLSVEWSRDGNKPEANTKPTRTLFVINFDPMNTRVSDIERHFTPFGNISSVRIRKNFA 123
Query: 152 FVHIDS 157
FV ++
Sbjct: 124 FVQFET 129
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV KPL + A ++ T ++ ++
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQYMQRMA 387
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++P + E LFEKYGK+ + + +GFV+ E+ A++ELN
Sbjct: 262 VYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRGFGFVNFSEHEQAAKAVEELN 321
Query: 91 -----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E+ L+ EAA + K +++ NL ++ ++E
Sbjct: 322 DTEFHGQKLFLGRAQKKSEREEELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDDERLQE 381
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT ++R +GFV +P + NK + E+NG M++ +P+ V ++ +
Sbjct: 382 EFAPFGTTTSAKVMRTPTGASRGFGFVCYSAPEEANKAVAEMNGKMIENRPLYVALAQRK 441
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 26/180 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YG 72
CR M PG G IFI N++ + + F +GK++ C V N YG
Sbjct: 151 CRIMWSQRDPGQRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKILSCKVASNEHGSLGYG 210
Query: 73 FVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDN 125
FVH E+++ AIK +NG ++N+K + + S+K T V+V NL
Sbjct: 211 FVHYESNDAAEAAIKHVNGMLLNDKKVYVGHHISKKDRQAKIEEARAHYTNVYVKNLDPA 270
Query: 126 TRAPEVRELFVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGKPM 177
E +LF YG + I R +GFV+ + K ++ELN G+ +
Sbjct: 271 VTQEEFEKLFEKYGKITSAAIATDQEGKSRGFGFVNFSEHEQAAKAVEELNDTEFHGQKL 330
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 137 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 196
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 197 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 256
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 257 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 316
Query: 187 RQR 189
++
Sbjct: 317 ERQ 319
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 49/195 (25%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 20 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 79
Query: 82 GRTAIKELNGQIVNE-------------------------------KPLKIEAATSRKGP 110
AI+++NG ++N KP++I S++ P
Sbjct: 80 AERAIEKMNGMLLNXXXXEASNIDSENVFPAAERALDTMNFDVIKGKPVRI--MWSQRDP 137
Query: 111 NTPTTKV---FVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-I 160
+ + V F+ NL + + + F +G ++ C +V + YGFVH ++ +
Sbjct: 138 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAA 197
Query: 161 NKCIKELNGMMVDGK 175
+ I+++NGM+++ +
Sbjct: 198 ERAIEKMNGMLLNDR 212
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 239 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 298
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 299 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 358
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 359 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 417
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 342 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 401
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 402 RIVATKPLYVALAQRKE 418
Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 12/95 (12%)
Query: 89 LNGQIVNEKPLKIEAATSRKGPNTPTTKV---FVGNLSDNTRAPEVRELFVPYGTVVECD 145
+N ++ KP++I S++ P+ + V F+ NL + + + F +G ++ C
Sbjct: 1 MNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 58
Query: 146 IV------RNYGFVHIDSPD-INKCIKELNGMMVD 173
+V + YGFVH ++ + + I+++NGM+++
Sbjct: 59 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 93
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 22/168 (13%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAI 86
G +FI N++P + + F +G+++ C V K +GFVH E+ E + AI
Sbjct: 146 GEGNVFIKNLHPAIDNKALHDTFSAFGRILSCKVATDNFGQSKGFGFVHFESPEAAQAAI 205
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRELFVPYG 139
+ +NG ++N + + +R+ + T V+V N+ EV+ELF P+G
Sbjct: 206 ENVNGMLLNNNEVYVGPHVARRDRQSKLEEVIKSFTNVYVKNIDLEASEEEVKELFTPFG 265
Query: 140 TV----VECDI---VRNYGFVHIDSPDIN-KCIKELNGMMVDGKPMKV 179
TV +E D R + FV+ + + K I+ LN GK + V
Sbjct: 266 TVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSIESLNDQDYKGKKLYV 313
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 87/183 (47%), Gaps = 25/183 (13%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G + P + L+ +F G+V V ++ Y +V+ N ++G AI
Sbjct: 59 TASLYVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKAI 118
Query: 87 KELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
ELN +V +P++I + A R G VF+ NL + + F +G +
Sbjct: 119 DELNYSVVKGQPIRIMWSQRDPAKRRNGEGN----VFIKNLHPAIDNKALHDTFSAFGRI 174
Query: 142 VECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQRPGVD 193
+ C + + +GFVH +SP+ + I+ +NGM+++ + V +R ++ ++
Sbjct: 175 LSCKVATDNFGQSKGFGFVHFESPEAAQAAIENVNGMLLNNNEVYVGPHVARRDRQSKLE 234
Query: 194 EVV 196
EV+
Sbjct: 235 EVI 237
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 90/200 (45%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ S E ++ LF +G V + K+ + FV+ E E +I+ LN
Sbjct: 243 VYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSIESLN 302
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
Q K L + EAA K + +FV NL D+ +++E
Sbjct: 303 DQDYKGKKLYVGRAQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDDSIDDEKLKE 362
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F +GT+ ++ + +GFV SP + ++ I E+N M+ GKP+ V ++ +
Sbjct: 363 EFQSFGTISSVKVMIDESGKSKGFGFVSFSSPEEASRAISEMNQHMLAGKPLYVALAQRK 422
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R +++ + + + +Q
Sbjct: 423 DVRRSQLEQQIQARNQLRLQ 442
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + + F +G ++ C VV K YGFVH E EE
Sbjct: 91 PSLRKSGVGNIFVKNLDRSIDSKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEE 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG +N++ + + SR+ T V++ NL ++ ++ L
Sbjct: 151 AERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQGL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FSKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 41/189 (21%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N+ E ++ LF K+G + V+ K +GFV E E+ R A+ E+N
Sbjct: 193 VYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMN 252
Query: 91 GQIVNEKPL-------KIEAATSRKG---------------PNTPTTK-----VFVGNLS 123
G+ +N K + K+E T K P + + ++V NL
Sbjct: 253 GKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDISVRCQGVNLYVKNLD 312
Query: 124 DNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKP 176
D +R+ F P+GT+ + + +GFV SP + K + E+NG +V KP
Sbjct: 313 DGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 372
Query: 177 MKVQISTSR 185
+ V ++ +
Sbjct: 373 LYVALAQRK 381
Score = 43.9 bits (102), Expect = 0.039, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V K +GFV + EE A+ E+NG
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNG 365
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 366 RIVATKPLYVALAQRKE 382
>gi|254585491|ref|XP_002498313.1| ZYRO0G07326p [Zygosaccharomyces rouxii]
gi|238941207|emb|CAR29380.1| ZYRO0G07326p [Zygosaccharomyces rouxii]
Length = 468
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 85/180 (47%), Gaps = 31/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G ++ + ++ FE G V V+ + YG+V + A+KE+
Sbjct: 238 IFVGRLSWNIDDQWLKNEFEHIGGVQSARVIYERGSTRSRGYGYVDFTDKSYAEKAVKEM 297
Query: 90 NGQIVNEKPLKIEAATSRKG--------------PNTPTTKVFVGNLSDNTRAPEVRELF 135
+G+ ++ +P+ + +TS+ P+ P+ +F+GNLS N ++ ELF
Sbjct: 298 HGKELDGRPINCDMSTSKPTVNPREDRAKRFGDMPSEPSDTLFLGNLSFNADRDQIYELF 357
Query: 136 VPYGTVV--------ECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
P+G V+ E + + +G+V S D K ++ L G +D +P+++ ST +
Sbjct: 358 SPHGEVISVRIPTHPETEQPKGFGYVQYASVDSAQKALETLQGEYIDNRPVRLDFSTPKT 417
Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 102 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFV 153
E++ K P T +FVG LS N ++ F G V ++ R YG+V
Sbjct: 224 ESSKKAKLSGEPAT-IFVGRLSWNIDDQWLKNEFEHIGGVQSARVIYERGSTRSRGYGYV 282
Query: 154 HI-DSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
D K +KE++G +DG+P+ +STS+ P D
Sbjct: 283 DFTDKSYAEKAVKEMHGKELDGRPINCDMSTSKPTVNPREDRA 325
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 22/164 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +
Sbjct: 82 PSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDETGNSKGYGFVHFETKQ 141
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I+++NG ++N K + + R T V++ N+ +N E+ E
Sbjct: 142 SATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQRAKLYTNVYIKNIDENVNEKELFE 201
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNG 169
+F YGT+ C ++ R +GFV + P + K + EL+G
Sbjct: 202 MFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHG 245
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 42/193 (21%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N++ + + + +F+KYG + C V+ + +GFV E+ +E A+ EL+
Sbjct: 185 VYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELH 244
Query: 91 GQIVNE-----------------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTR 127
G+ E + KIE +G N ++V NL D
Sbjct: 245 GKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVN-----LYVKNLDDTID 299
Query: 128 APEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+R F +GT+ ++ + +GFV+ SP + K + ++NG +V KP+ V
Sbjct: 300 DERLRREFSAFGTIKSAKVMMDDGRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVT 359
Query: 181 ISTSRVRQRPGVD 193
++ + ++ +D
Sbjct: 360 LAQRKKDRKAHLD 372
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGAALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGINDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G + E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGINDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N+ + +F+K+G ++ VV K YGFV E +E AI+ LN
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSEDGKSKGYGFVQFETEESANAAIERLN 159
Query: 91 GQIVNEKPLKIEAATSR-----KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
G +V +K + + + GP+T T +++ NL + +RE F +G ++
Sbjct: 160 GYLVGDKQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSSFGKIISLA 219
Query: 146 IVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
+ ++ +GFV+ D+P D + ++ +NG+ + K + V
Sbjct: 220 VAKDSNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYV 261
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 42/182 (23%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ S L+R F +GK++ V K+ +GFV+ +N E+ + A++ +N
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMN 250
Query: 91 GQIVNEKPLKIEAATSR----------------------KGPNTPTTKVFVGNLSDNTRA 128
G + K L + A + KG N ++V N+ DN
Sbjct: 251 GLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSN-----IYVKNIDDNVSD 305
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+R+ F GT+ I+R+ +GFV +P + NK + +G M GKP+ V
Sbjct: 306 EGLRDHFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVS 365
Query: 181 IS 182
++
Sbjct: 366 LA 367
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G +FI N++ + + F +G ++ C VV + YGFVH E E
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+ +NG ++N++ + + SRK T V++ N D+ +RE+
Sbjct: 151 ATRAIETMNGMLLNDRKVFVGHFKSRKEREAEVGARAIEFTNVYIKNFGDDMDDDRLREI 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV+ + + K + ++NG ++G+ + V + R+
Sbjct: 211 FSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVGRAQKRL 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + +R +F ++GK + V+ K +GFV+ E EE + A+ ++N
Sbjct: 193 VYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVADMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K L+ ++ RK +V +V NL D +R+
Sbjct: 253 GKEINGRLLYVGRAQKRLERQSELKRKFEQMKQERVNRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F PYGT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPYGTITSAKVMTEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F YG + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV+ KPL + A ++
Sbjct: 356 RIVSTKPLYVALAQRKE 372
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 159
GP P ++VG+L + + E F P G ++ + R+ Y +++ P D
Sbjct: 5 GPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 160 INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIG 198
+ + +N ++ G+P+++ S ++ PG+ + +G
Sbjct: 65 AERALDTMNFEVIKGRPIRIMWS----QRDPGLRKSGVG 99
>gi|195121744|ref|XP_002005379.1| GI19109 [Drosophila mojavensis]
gi|193910447|gb|EDW09314.1| GI19109 [Drosophila mojavensis]
Length = 300
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 18/140 (12%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKEL 89
KI+I N+ + + F +G ++ C+V K+ YGFVH +++E R AI+++
Sbjct: 107 KIYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 166
Query: 90 NGQIVNEKPLKIEAATSRKG----PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
NG + N + + + R+ T ++V NLS+ +RE+F PYG +
Sbjct: 167 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 226
Query: 146 IV-------RNYGFVHIDSP 158
++ R +GFV +SP
Sbjct: 227 LMLDEEGRSRRFGFVAFESP 246
Score = 42.7 bits (99), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKEL 167
K+++ NL + V + F +G ++ C++ R YGFVH DS + + I+++
Sbjct: 107 KIYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 166
Query: 168 NGMMVDGKPMKV 179
NGM+ + + + V
Sbjct: 167 NGMLCNNQKVHV 178
>gi|324511850|gb|ADY44928.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 544
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 22/177 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P S V +F+ N+N + + + F +G +V C + K YGFV E +E
Sbjct: 96 PSTSRVAAGNVFVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEE 155
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSR-------KGPNTPTTKVFVGNLSDNTRAPEVRE 133
R AI NG I K + + SR K T VFV N +D ++++
Sbjct: 156 AARKAIDGTNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCFTNVFVKNFADILDKEKLQQ 215
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
LF +G +V C + +GFV ++P D K +K++ + G K+ +S
Sbjct: 216 LFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVS 272
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 85/174 (48%), Gaps = 21/174 (12%)
Query: 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEG 82
SS +++G+++P + ++ F G+V+ V ++ Y +V+ E E+
Sbjct: 11 SSAKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDA 70
Query: 83 RTAIKELNGQIVNEKPLKIEAATSRKGPNT---PTTKVFVGNLSDNTRAPEVRELFVPYG 139
+ A++ +N IV+ +P++I S++ P+T VFV NL+ + + + F +G
Sbjct: 71 KQALETMNFDIVHGRPIRI--MWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYNKFSVFG 128
Query: 140 TVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
+V C + + YGFV ++ + K I NG++ +GK + V SR
Sbjct: 129 NIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSR 182
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ +++R F +YG V+ V+ K +GFV + +E A+ +
Sbjct: 304 LYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMK 363
Query: 91 GQIVNEKPLKIEAATSRK 108
G++V KPL + A ++
Sbjct: 364 GKMVCTKPLYVSMAQRKE 381
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 91/189 (48%), Gaps = 42/189 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N+ TS E ++ +F ++G + V+++ +GFV+ EN ++ +++ LN
Sbjct: 210 VFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALN 269
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ V+ K + EAA +G N ++V NL D+
Sbjct: 270 GKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGAN-----LYVKNLDDSIDD 324
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+++ELF +GT+ C ++R+ GFV SP + + + E+NG M+ KP+ V
Sbjct: 325 DKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVA 384
Query: 181 ISTSRVRQR 189
++ + +R
Sbjct: 385 LAQRKEDRR 393
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 20/168 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G+ IFI N++ + + F +G ++ C V K +GFV + +E
Sbjct: 109 PSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEE 168
Query: 81 EGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
AI++LNG ++N+K P + T VFV NL++ T +++ +F
Sbjct: 169 AALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMF 228
Query: 136 VPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 175
+G + ++R+ +GFV+ + + D + ++ LNG VDGK
Sbjct: 229 GEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGK 276
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 78/160 (48%), Gaps = 21/160 (13%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G+++ + + LF + G+VV V ++ YG+V+ N + A+
Sbjct: 28 TTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRAL 87
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
LN +N P+++ S + P+ + + +F+ NL + + F +G+++
Sbjct: 88 DVLNFTPLNGNPIRV--MYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILS 145
Query: 144 CDIV-------RNYGFVHIDSPDIN-KCIKELNGMMVDGK 175
C + + +GFV D+ + K I++LNGM+++ K
Sbjct: 146 CKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDK 185
Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCI 164
TT ++VG+L N ++ +LF G VV + R+ YG+V+ +P D ++ +
Sbjct: 28 TTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRAL 87
Query: 165 KELNGMMVDGKPMKVQIS 182
LN ++G P++V S
Sbjct: 88 DVLNFTPLNGNPIRVMYS 105
>gi|393912275|gb|EFO22750.2| hypothetical protein LOAG_05733 [Loa loa]
Length = 289
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 174
K+FVG L D + +R+LF + V ECD++++Y FVH+ + D I++L+G +++G
Sbjct: 3 KLFVGGLPDGVDSMRLRQLFSQFVVVNECDVIKDYAFVHVPEESDARTAIEKLDGYILEG 62
Query: 175 KPMKVQISTSRVRQRPGVDE 194
K + ++ STS++R+ PG+D+
Sbjct: 63 KAINIRRSTSKLRKEPGMDK 82
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+G + G +R LF ++ V ECDV+K+Y FVH+ + + RTAI++L+G I+
Sbjct: 3 KLFVGGLPDGVDSMRLRQLFSQFVVVNECDVIKDYAFVHVPEESDARTAIEKLDGYILEG 62
Query: 97 KPLKIEAATSR 107
K + I +TS+
Sbjct: 63 KAINIRRSTSK 73
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D+ ++EL
Sbjct: 151 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
F YG + ++ + +GFV + + NK ++E+NG ++GK + V
Sbjct: 211 FGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFV 263
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF KYGK + V+ K +GFV E EE A++E+N
Sbjct: 193 VYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMN 252
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ +N K L + E + +++ NL D ++R+
Sbjct: 253 GKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + + G +++P +
Sbjct: 373 ERKAHLTNQYMQRIAGMRALPANTI 397
Score = 43.5 bits (101), Expect = 0.047, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
RF+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 RFEQLKQERLSRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|312077471|ref|XP_003141318.1| hypothetical protein LOAG_05733 [Loa loa]
Length = 284
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 174
K+FVG L D + +R+LF + V ECD++++Y FVH+ + D I++L+G +++G
Sbjct: 3 KLFVGGLPDGVDSMRLRQLFSQFVVVNECDVIKDYAFVHVPEESDARTAIEKLDGYILEG 62
Query: 175 KPMKVQISTSRVRQRPGVDE 194
K + ++ STS++R+ PG+D+
Sbjct: 63 KAINIRRSTSKLRKEPGMDK 82
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+G + G +R LF ++ V ECDV+K+Y FVH+ + + RTAI++L+G I+
Sbjct: 3 KLFVGGLPDGVDSMRLRQLFSQFVVVNECDVIKDYAFVHVPEESDARTAIEKLDGYILEG 62
Query: 97 KPLKIEAATSR 107
K + I +TS+
Sbjct: 63 KAINIRRSTSK 73
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 20/168 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G+ IFI N++ + + F +G ++ C V K +GFV + +E
Sbjct: 109 PSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEE 168
Query: 81 EGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
AI++LNG ++N+K P + T VFV NL++ T +++ +F
Sbjct: 169 AALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMF 228
Query: 136 VPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 175
+G + ++R+ +GFV+ + + D + ++ LNG VDGK
Sbjct: 229 GEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGK 276
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 89/185 (48%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N+ TS E ++ +F ++G + V+++ +GFV+ EN ++ +++ LN
Sbjct: 210 VFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALN 269
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ V+ K + EAA +G N ++V NL D+
Sbjct: 270 GKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGAN-----LYVKNLDDSIDD 324
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+++ELF +GT+ C ++R+ GFV SP + + + E+NG M+ KP+ V
Sbjct: 325 DKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVA 384
Query: 181 ISTSR 185
++ +
Sbjct: 385 LAQRK 389
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 78/160 (48%), Gaps = 21/160 (13%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G+++ + + LF + G+VV V ++ YG+V+ N + A+
Sbjct: 28 TTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRAL 87
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
LN +N P+++ S + P+ + + +F+ NL + + F +G+++
Sbjct: 88 DVLNFTPLNGNPIRV--MYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILS 145
Query: 144 CDIV-------RNYGFVHIDSPDIN-KCIKELNGMMVDGK 175
C + + +GFV D+ + K I++LNGM+++ K
Sbjct: 146 CKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDK 185
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ + ++ LF +G + C V+++ GFV + EE A+ E+N
Sbjct: 313 LYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMN 372
Query: 91 GQIVNEKPLKIEAATSRK 108
G+++ KPL + A ++
Sbjct: 373 GRMIVSKPLYVALAQRKE 390
Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCI 164
TT ++VG+L N ++ +LF G VV + R+ YG+V+ +P D ++ +
Sbjct: 28 TTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRAL 87
Query: 165 KELNGMMVDGKPMKVQIS 182
LN ++G P++V S
Sbjct: 88 DVLNFTPLNGNPIRVMYS 105
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 46 PPLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 105
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 106 AERAIEKMNGMLLNDRKVSVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 165
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 166 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 225
Query: 187 RQR 189
++
Sbjct: 226 ERQ 228
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 207
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 208 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 267
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + +NG +V KP+ V ++
Sbjct: 268 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTGMNGRIVATKPLYVALA 323
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ +NG
Sbjct: 251 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTGMNG 310
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 311 RIVATKPLYVALAQRKE 327
>gi|116788830|gb|ABK25016.1| unknown [Picea sitchensis]
Length = 290
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 24/175 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKE 88
K+F+GN+ + + LFE G+V++ +++ + +GFV M EE ++
Sbjct: 114 KLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVEL 173
Query: 89 LNGQIVNEKPLKIEAATSR-------KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N + + L + A R + T K++VGNL + +LF +G V
Sbjct: 174 FNRHSLEGRLLTVNKAAPRGTKVERPSQAGSSTNKIYVGNLPWQADDNSLLQLFSEHGKV 233
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVR 187
+E +V R +GFV S ++N I L+G +DG+P++V I+ R R
Sbjct: 234 LEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGTDMDGRPLRVNIAEDRRR 288
Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMEND 79
P + T KI++GN+ + LF ++GKV+E VV + +GFV ++
Sbjct: 199 PSQAGSSTNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSE 258
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRK 108
E AI L+G ++ +PL++ A R+
Sbjct: 259 SEVNDAIAALDGTDMDGRPLRVNIAEDRR 287
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N D+ ++EL
Sbjct: 151 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F YG + ++ + +GFV + D N+ ++++NG ++GK + V + +V
Sbjct: 211 FSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANQAVEDMNGKDINGKMVFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF KYGK + V+ K +GFV E E+ A++++N
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANQAVEDMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + + G +++P +
Sbjct: 373 ERKAHLTNQYMQRIAGMRALPANTI 397
Score = 42.7 bits (99), Expect = 0.089, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|384499302|gb|EIE89793.1| hypothetical protein RO3G_14504 [Rhizopus delemar RA 99-880]
Length = 292
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 24/185 (12%)
Query: 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDV------VKNYGFVHME-NDEEG 82
F + GT +F+G +N + E IR F + G V + + VK+ GF H++ EG
Sbjct: 76 FGAEGT-TVFVGQLNFDATAEEIRTHFGQCGPVSDVRLRMHPNGVKSRGFAHIDFTSAEG 134
Query: 83 RTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEVRELFV 136
+ A L+G + ++++ A +G +T T KVFV NLS +T +++ F
Sbjct: 135 KQAAMALDGTEFMGRTIRVDDAQPAQGRSTDTNYGPKTDKVFVANLSYDTDEDSLKQAFE 194
Query: 137 PYGTVV---------ECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
+GT+V + +R ++ ++ D +K +NG+ +DG+P++ S
Sbjct: 195 KFGTIVGEIGLPISRDTGRIRGIAYIQFETEDEAEAAVKGMNGVYLDGRPIRTDFSGDND 254
Query: 187 RQRPG 191
R R G
Sbjct: 255 RNRLG 259
>gi|116787606|gb|ABK24573.1| unknown [Picea sitchensis]
Length = 290
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 24/175 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKE 88
K+F+GN+ + + LFE G+V++ +++ + +GFV M EE ++
Sbjct: 114 KLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVEL 173
Query: 89 LNGQIVNEKPLKIEAATSR-------KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N + + L + A R + T K++VGNL + +LF +G V
Sbjct: 174 FNRHSLEGRLLTVNKAAPRGTKVERPSQAGSSTNKIYVGNLPWQADDNSLLQLFSEHGKV 233
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVR 187
+E +V R +GFV S ++N I L+G +DG+P++V I+ R R
Sbjct: 234 LEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGTDMDGRPLRVNIAEDRRR 288
Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMEND 79
P + T KI++GN+ + LF ++GKV+E VV + +GFV ++
Sbjct: 199 PSQAGSSTNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSE 258
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRK 108
E AI L+G ++ +PL++ A R+
Sbjct: 259 SEVNDAIAALDGTDMDGRPLRVNIAEDRR 287
>gi|170596723|ref|XP_001902872.1| RNA-binding protein lark [Brugia malayi]
gi|158589182|gb|EDP28280.1| RNA-binding protein lark, putative [Brugia malayi]
Length = 283
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 174
K+FVG L D + +R+LF + V ECD++++Y FVH+ + D I++L+G +++G
Sbjct: 3 KLFVGGLPDGVDSMRLRQLFSQFVVVNECDVIKDYAFVHVPEESDARTAIEKLDGYILEG 62
Query: 175 KPMKVQISTSRVRQRPGVDE 194
K + ++ STS++R+ PG+D+
Sbjct: 63 KAINIRRSTSKLRKEPGMDK 82
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+G + G +R LF ++ V ECDV+K+Y FVH+ + + RTAI++L+G I+
Sbjct: 3 KLFVGGLPDGVDSMRLRQLFSQFVVVNECDVIKDYAFVHVPEESDARTAIEKLDGYILEG 62
Query: 97 KPLKIEAATSR 107
K + I +TS+
Sbjct: 63 KAINIRRSTSK 73
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 22/168 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + I F +G ++ C V K +GFVH E E
Sbjct: 92 PSLRKSGVGNVFIKNLDKSIDNKAIYDTFSAFGNILSCKVAQDETGSSKGFGFVHFETQE 151
Query: 81 EGRTAIKELNGQIVNEKPLKI-------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
A+ ++NG ++N K + + E + T ++V N D ++R+
Sbjct: 152 AADEAMAKVNGMMLNGKKVYVGRFVPRSERLAAMGEAQKRFTNIYVKNFGDKWDDDKLRD 211
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVD 173
F YG VV ++ R +GFV + PD K +E+N M VD
Sbjct: 212 FFEKYGKVVSAKVMTDDMGHSRGFGFVSYEEPDSAGKACEEMNDMEVD 259
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 78/157 (49%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++P + ++ F G V+ V ++ Y +V+ + + A+ +
Sbjct: 14 LYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 73
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N + KP++I S++ P+ + VF+ NL + + + F +G ++ C +
Sbjct: 74 NFDTIKGKPMRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAIYDTFSAFGNILSCKV 131
Query: 147 VRN-------YGFVHIDSPDI-NKCIKELNGMMVDGK 175
++ +GFVH ++ + ++ + ++NGMM++GK
Sbjct: 132 AQDETGSSKGFGFVHFETQEAADEAMAKVNGMMLNGK 168
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
I++ N + +R FEKYGKVV V+ + +GFV E + A +E+N
Sbjct: 195 IYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSYEEPDSAGKACEEMN 254
Query: 91 GQIVN------------------EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
V+ E K E + ++V NL +R
Sbjct: 255 DMEVDDGRRIYVGRAQKKAERQAELKAKFEKIKQERIQRYQGVNLYVKNLDSTIDEEILR 314
Query: 133 ELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
+ F +GT+ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 315 KEFSQFGTITSSKVMTENGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRK 374
Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E++R F ++G + V+ K +GFV + EE A+ E+NG
Sbjct: 299 LYVKNLDSTIDEEILRKEFSQFGTITSSKVMTENGRSKGFGFVCFSSPEEATKAVTEMNG 358
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSD-NTRAPEVRELF 135
+IV KPL + A ++ ++ ++ AP+ ++F
Sbjct: 359 RIVVSKPLYVALAQRKEDRKAQLASQYMQRMAGMRMPAPQPNQMF 403
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 159
GP P ++VG+L + + E F P G V+ + R+ Y +V+ P D
Sbjct: 6 GPTYPCASLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPAD 65
Query: 160 INKCIKELNGMMVDGKPMKVQIS 182
+ + +N + GKPM++ S
Sbjct: 66 AERALDTMNFDTIKGKPMRIMWS 88
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 130 CRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGY 189
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T V+V N++
Sbjct: 190 GFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAP 249
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
+ + RELF +G V + R+ +GFV+ + + +K + +LNG G+
Sbjct: 250 DVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVDDLNGKDFHGQD 309
Query: 177 MKV 179
+ V
Sbjct: 310 LYV 312
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 24/135 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ P + + R LFEK+G V + ++ +GFV+ E A+ +LN
Sbjct: 242 VYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVDDLN 301
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + + L + EAA K +++ NL D+ ++R+
Sbjct: 302 GKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKLRQ 361
Query: 134 LFVPYGTVVECDIVR 148
+F +G + ++R
Sbjct: 362 MFSEFGPITSAKVMR 376
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G +FI N++ + + F +G ++ C VV + YGFVH E E
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+ +NG ++N++ + + SR+ T V++ N ++ ++E+
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEI 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ R +GFV+ + + K + E+NG V+G+ + V + R+
Sbjct: 211 FSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRI 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + ++ +F +G + V+ + +GFV+ N EE + A+ E+N
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ VN +K ++ + RK ++ +V NL D +R+
Sbjct: 253 GKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F PYGT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G + +R F YG + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV+ KPL + A ++ T ++ L+
Sbjct: 356 RIVSTKPLYVALAQRKEERKAILTNQYMQRLA 387
>gi|332029721|gb|EGI69600.1| Nucleolysin TIAR [Acromyrmex echinatior]
Length = 393
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ S +L+ LF + G V C +++ Y FV N + TA+ +N +
Sbjct: 10 LYVGNLDTSVSEDLLCALFSQIGAVKGCKIIREPGNDPYAFVEFTNHQCAATALAAMNKR 69
Query: 93 IVNEKPLKIEAATSRKG-PNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+K +K+ ATS P T+ +FVG+LS ++E F P+G + C IVR
Sbjct: 70 SFLDKEMKVNWATSPGNQPKLDTSNHHHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQIST 183
+ Y FV + + I +NG + + ++ ST
Sbjct: 130 DPQTLKSKGYAFVSFVKKSEAEAAINAMNGQWLGSRSIRTNWST 173
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 31/161 (19%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + IF+G+++P + ++ F +G++ C +V K Y FV
Sbjct: 86 NQPKLDTSNHHHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAAT--------------SRKGPN--------TPTT 115
E AI +NGQ + + ++ +T + PN +PT
Sbjct: 146 KKSEAEAAINAMNGQWLGSRSIRTNWSTRKPPPPRSERPRHSNNSKPNYEEVYNQSSPTN 205
Query: 116 -KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI 155
V+ G ++ +++ F P+GT+ + + ++ G+ I
Sbjct: 206 CTVYCGGFTNGITDELIKKTFSPFGTIQDIRVFKDKGYAFI 246
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 32 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 91
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 92 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 151
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 152 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 211
Query: 187 RQR 189
++
Sbjct: 212 ERQ 214
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 134 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 193
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 194 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 253
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 254 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 309
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 237 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 296
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 297 RIVATKPLYVALAQRKE 313
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 22/174 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 91 PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCRVATDEEAASKGYGFVHFETEE 150
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
AI ++NG ++N K + + RK T V++ N D ++
Sbjct: 151 AANKAISKVNGMLLNNKKVYVGKFIPRKEREKMLGDKARCFTNVYIKNFGDELDDDKLLV 210
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
+F YG + ++ R +GFV + PD + ++ELNG + G+P+ V
Sbjct: 211 IFEKYGKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELNGKDMGGRPLYV 264
Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + + +FEKYGK+ V+ + +GFV E + A++ELN
Sbjct: 194 VYIKNFGDELDDDKLLVIFEKYGKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELN 253
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ + +PL + A + + + ++V NL D +R+
Sbjct: 254 GKDMGGRPLYVGRAQKKAERQSELKRHFEQLKQERLNRYQGVNLYVKNLDDALDDERLRK 313
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+G + ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 314 EFGPFGNITSAKVMTDANGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRK 373
Score = 40.4 bits (93), Expect = 0.41, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ E +R F +G + V+ K +GFV + EE A+ E+N
Sbjct: 297 LYVKNLDDALDDERLRKEFGPFGNITSAKVMTDANGRSKGFGFVCFSSPEEATKAVTEMN 356
Query: 91 GQIVNEKPLKIEAATSRK 108
G+IV KPL + A ++
Sbjct: 357 GRIVVSKPLYVALAQRKE 374
>gi|324501709|gb|ADY40758.1| Polyadenylate-binding protein 1 [Ascaris suum]
Length = 595
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 22/177 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P S V +F+ N+N + + + F +G +V C + K YGFV E +E
Sbjct: 96 PSTSRVAAGNVFVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEE 155
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSR-------KGPNTPTTKVFVGNLSDNTRAPEVRE 133
R AI NG I K + + SR K T VFV N +D ++++
Sbjct: 156 AARKAIDGTNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCFTNVFVKNFADILDKEKLQQ 215
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
LF +G +V C + +GFV ++P D K +K++ + G K+ +S
Sbjct: 216 LFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVS 272
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 85/174 (48%), Gaps = 21/174 (12%)
Query: 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEG 82
SS +++G+++P + ++ F G+V+ V ++ Y +V+ E E+
Sbjct: 11 SSAKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDA 70
Query: 83 RTAIKELNGQIVNEKPLKIEAATSRKGPNT---PTTKVFVGNLSDNTRAPEVRELFVPYG 139
+ A++ +N IV+ +P++I S++ P+T VFV NL+ + + + F +G
Sbjct: 71 KQALETMNFDIVHGRPIRI--MWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYNKFSVFG 128
Query: 140 TVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
+V C + + YGFV ++ + K I NG++ +GK + V SR
Sbjct: 129 NIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSR 182
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ +++R F +YG V+ V+ K +GFV + +E A+ +
Sbjct: 304 LYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMK 363
Query: 91 GQIVNEKPLKIEAATSRK 108
G++V KPL + A ++
Sbjct: 364 GKMVCTKPLYVSMAQRKE 381
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 26 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 85
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 86 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 145
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 146 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 205
Query: 187 RQR 189
++
Sbjct: 206 ERQ 208
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 128 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 187
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 188 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 247
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP V ++ +
Sbjct: 248 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQRK 306
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 231 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 290
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KP + A ++
Sbjct: 291 RIVATKPFYVALAQRKE 307
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 54 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 113
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 114 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 173
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 174 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 233
Query: 187 RQR 189
++
Sbjct: 234 ERQ 236
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 156 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 215
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 216 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 275
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 276 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 331
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 259 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 318
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 319 RIVATKPLYVALAQRKE 335
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 20 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 79
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 80 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 139
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 140 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 199
Query: 187 RQR 189
++
Sbjct: 200 ERQ 202
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 122 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 181
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 182 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 241
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 242 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 300
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 225 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 284
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 285 RIVATKPLYVALAQRKE 301
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 20 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 79
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 80 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 139
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 140 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 199
Query: 187 RQR 189
++
Sbjct: 200 ERQ 202
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 122 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 181
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 182 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 241
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 242 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 300
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 225 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 284
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 285 RIVATKPLYVALAQRKE 301
>gi|119594962|gb|EAW74556.1| RNA binding motif protein 4, isoform CRA_c [Homo sapiens]
Length = 79
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 51/75 (68%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPN 111
+ +EA+ +++ +
Sbjct: 63 VNINVEASKNKRASS 77
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 174
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 175 KPMKVQISTSR 185
+ V+ S ++
Sbjct: 63 VNINVEASKNK 73
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 20 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 79
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 80 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 139
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 140 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 199
Query: 187 RQR 189
++
Sbjct: 200 ERQ 202
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 122 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 181
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 182 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 241
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP V ++ +
Sbjct: 242 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQRK 300
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 225 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 284
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KP + A ++
Sbjct: 285 RIVATKPFYVALAQRKE 301
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 19/166 (11%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAI 86
G +F+ N++P + ++ +F K+G ++ C V K +GFV ++D+ A+
Sbjct: 114 TGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEENGKSKCFGFVQFDSDDSATAAL 173
Query: 87 KELNGQIVNEKPL---KIEAATSRKGPNTPT--TKVFVGNLSDNTRAPEVRELFVPYGTV 141
LN +++ K L K RK + T T V+V NL ++ +R+ F +G V
Sbjct: 174 NALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKV 233
Query: 142 VECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
I+ R +GFV+ +SPD K ++ LNG M+ K + V
Sbjct: 234 GTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFV 279
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 81/177 (45%), Gaps = 22/177 (12%)
Query: 38 IFIGNVNPGTS-VELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
+++G+++P S VEL+ +F G +V + ++ Y +V+ + A+
Sbjct: 31 LYVGDLDPEVSEVELV-DVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDASKALAC 89
Query: 89 LNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
LN + KP++I S + P T +FV NL + + ++++F +G ++ C
Sbjct: 90 LNHTKLMGKPMRI--MWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCK 147
Query: 146 IV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
+ + +GFV DS D + LN M+DGK + V + ++ +E
Sbjct: 148 VAEENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEET 204
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 84/184 (45%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ + ++IR F ++GKV ++K+ +GFV+ E+ +E + A++ LN
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALN 268
Query: 91 GQIVNEKPLKIEAATSRKG----------------PNTPTTKVFVGNLSDNTRAPEVREL 134
G ++ K L + A + + ++V NL + +++E
Sbjct: 269 GAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEH 328
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F G + ++R+ +GFV S + K + LNG ++ G+ + + ++ +
Sbjct: 329 FSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKE 388
Query: 187 -RQR 189
RQR
Sbjct: 389 DRQR 392
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
+++ N+N T+ E + LF ++G +V + +K +GFV+ EN E+ A++ LN
Sbjct: 110 LYVKNINSETTDEQFQDLFIQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALN 169
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+N + L + EA K +FV NL D+ ++ E
Sbjct: 170 ESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEE 229
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F PYGT+ ++R +GFV +P + K I E N +V GKP+ V I+ +
Sbjct: 230 EFTPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 289
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 83/174 (47%), Gaps = 22/174 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G+ IFI N++P + + F +G ++ + K +GFVH E +
Sbjct: 7 PSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEG 66
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+ AI LNG ++N + + + SRK ++ T ++V N++ T + ++
Sbjct: 67 AAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQD 126
Query: 134 LFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
LF+ +G +V + ++ +GFV+ ++ D K ++ LN ++G+ + V
Sbjct: 127 LFIQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYV 180
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 27 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 86
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 87 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 146
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 147 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 206
Query: 187 RQR 189
++
Sbjct: 207 ERQ 209
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 129 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 188
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 189 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 248
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 249 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 307
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 232 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 291
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 292 RIVATKPLYVALAQRKE 308
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 91 PSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEE 150
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I ++NG ++N K + + RK T V+V N ++ +++E
Sbjct: 151 AANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKE 210
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMKV 179
+F YGT+ ++ R +GFV + PD + + ELNG V +GK M V
Sbjct: 211 MFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N + + ++ +FEKYG + V+ + +GFV E+ + A+ ELN
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 253
Query: 91 GQIVNE-----------------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTR 127
G+ V E + LK+E + +G N ++V NL D+
Sbjct: 254 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVN-----LYVKNLDDSIN 308
Query: 128 APEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+R F P+GT+ ++ + +GFV +P + K + E+NG ++ KP+ V
Sbjct: 309 DERLRREFAPFGTITSAKVMMEDGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVA 368
Query: 181 ISTSR 185
++ +
Sbjct: 369 LAQRK 373
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 25/144 (17%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q +L ++SRY +++ N++ + E +R F +G +
Sbjct: 281 KFEQLKLERLSRYQG------------------VNLYVKNLDDSINDERLRREFAPFGTI 322
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK 116
V+ K +GFV EE A+ E+NG+I+ KPL + A ++
Sbjct: 323 TSAKVMMEDGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLAS 382
Query: 117 VFVGNLSDNTRAPEVRELFVPYGT 140
++ L+ N R ++ ++F P G
Sbjct: 383 QYMQRLA-NMRMQQMGQMFPPGGA 405
>gi|308493359|ref|XP_003108869.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
gi|308247426|gb|EFO91378.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
Length = 404
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 31/170 (18%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
F +F+G+++ + +R F+ +G V + V+ K YGFV EE AI+
Sbjct: 133 FHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIE 192
Query: 88 ELNGQIVNEKPLKIEAATSRKGPN-TPT------------------TKVFVGNLSDNTRA 128
++NGQ + + ++ AT + G PT T V+VGN++ N
Sbjct: 193 QMNGQWLGRRTIRTNWATRKPGDQEKPTHYNEKSFDEIYNQTSGDNTSVYVGNIA-NLSE 251
Query: 129 PEVRELFVPYGTVVECDI--VRNYGFVHIDSPD-INKCIKELNGMMVDGK 175
E+R+ F YG + E I ++ Y FV D+ D K I ++N V G+
Sbjct: 252 DEIRQAFASYGRISEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQEVGGQ 301
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|406602740|emb|CCH45698.1| Nuclear localization sequence-binding protein [Wickerhamomyces
ciferrii]
Length = 467
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 33/181 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+F+G ++ E ++ FE G V+ V+ + YG+V ++ A+KE
Sbjct: 237 LFVGRLSWSIDDEWLKREFEPLGGVISARVIFERATGKSRGYGYVDFDSKSAAEKALKEY 296
Query: 90 NGQIVNEKPLKIEAATSR----------------KGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++ +P+ ++ +T + P+ P+ +F+GNLS N + E
Sbjct: 297 QGREIDGRPINLDMSTGKPHASNNRSNDRASKFGDTPSAPSDTLFLGNLSFNANRDNLSE 356
Query: 134 LFVPYGTVVECDI--------VRNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTS 184
+F YG++V I + +G+V S D K ++ LNG ++G+P+++ S
Sbjct: 357 VFSEYGSIVSVRIPTHPDTEQPKGFGYVQYGSVDEAKAALEALNGEYIEGRPVRLDFSAP 416
Query: 185 R 185
R
Sbjct: 417 R 417
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 16 SNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDV 67
SNN+ N S + +F+GN++ + + + +F +YG +V + +
Sbjct: 318 SNNRSNDRASKFGDTPSAPSDTLFLGNLSFNANRDNLSEVFSEYGSIVSVRIPTHPDTEQ 377
Query: 68 VKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN 111
K +G+V + +E + A++ LNG+ + +P++++ + R N
Sbjct: 378 PKGFGYVQYGSVDEAKAALEALNGEYIEGRPVRLDFSAPRDNSN 421
>gi|357610697|gb|EHJ67099.1| TIA-1-related RNA binding protein [Danaus plexippus]
Length = 388
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 18/166 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ + E + LF + G+V C +++ Y F+ N TA+ +N +
Sbjct: 10 LYVGNLDASVTEEFLCALFGQIGEVKGCKIIREPGNDPYAFLEFTNHASAATALAAMNRR 69
Query: 93 IVNEKPLKIEAATSRKG-PNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+ EK +K+ ATS P T T+ +FVG+LS +RE F P+G + C IVR
Sbjct: 70 VFLEKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETHILREAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+ Y FV + D I+ +NG + + ++ ST +
Sbjct: 130 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 175
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 34/164 (20%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + IF+G+++P ++R F +G++ C +V K Y FV
Sbjct: 86 NQPKTDTSNHHHIFVGDLSPEIETHILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAATSR---KGPN---------------------TP 113
+ AI+ +NGQ + + ++ +T + KGPN +P
Sbjct: 146 KKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPTKGPNEGAPSSKRVKQPTFDEVYNQSSP 205
Query: 114 T-TKVFVGNLSDNTRAPEV-RELFVPYGTVVECDIVRNYGFVHI 155
T T V+ G + N E+ + F +G + + + R+ G+ I
Sbjct: 206 TNTTVYCGGFTSNVITEELMQSTFSQFGQIQDVRVFRDKGYAFI 249
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 91 PSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEE 150
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I ++NG ++N K + + RK T V+V N ++ +++E
Sbjct: 151 AANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKE 210
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMKV 179
+F YGT+ ++ R +GFV + PD + + ELNG V +GK M V
Sbjct: 211 MFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N + + ++ +FEKYG + V+ + +GFV E+ + A+ ELN
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 253
Query: 91 GQIVNE-----------------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTR 127
G+ V E + LK+E + +G N ++V NL D+
Sbjct: 254 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVN-----LYVKNLDDSIN 308
Query: 128 APEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+R F P+GT+ ++ + +GFV +P + K + E+NG ++ KP+ V
Sbjct: 309 DERLRREFAPFGTITSAKVMMEDGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVA 368
Query: 181 ISTSR 185
++ +
Sbjct: 369 LAQRK 373
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 25/144 (17%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q +L ++SRY +++ N++ + E +R F +G +
Sbjct: 281 KFEQLKLERLSRYQG------------------VNLYVKNLDDSINDERLRREFAPFGTI 322
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK 116
V+ K +GFV EE A+ E+NG+I+ KPL + A ++
Sbjct: 323 TSAKVMMEDGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLAS 382
Query: 117 VFVGNLSDNTRAPEVRELFVPYGT 140
++ L+ N R ++ ++F P G
Sbjct: 383 QYMQRLA-NMRMQQMGQMFPPGGA 405
>gi|156837267|ref|XP_001642663.1| hypothetical protein Kpol_1076p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156113219|gb|EDO14805.1| hypothetical protein Kpol_1076p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 526
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 23/142 (16%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+FIG +N T+ E +R F KYGKVVE ++K+ +GF+ E+ T++ E
Sbjct: 157 KMFIGGLNWETTEETLRDYFNKYGKVVELKIMKDNNTGRSRGFGFLTFED----ATSVDE 212
Query: 89 L--NGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ I++ K + + A R+ T K+FVG + + R E + F YGT+++ +
Sbjct: 213 VVKTQHILDGKVIDPKRAIPRE-EQDKTGKIFVGGIGADVRPKEFEDFFAQYGTIIDAQL 271
Query: 147 V--------RNYGFVHIDSPDI 160
+ R +GFV DSPD
Sbjct: 272 MLDKDTGRSRGFGFVTYDSPDA 293
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 91 PSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEE 150
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I +NG ++N K + + RK T V+V N ++ +++E
Sbjct: 151 AANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKE 210
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMKV 179
+F YGT+ ++ R +GFV + PD + + ELNG V +GK M V
Sbjct: 211 MFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N + + ++ +FEKYG + V+ + +GFV E+ + A+ ELN
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 253
Query: 91 GQIVNE-----------------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTR 127
G+ V E + LK+E +G N ++V NL D+
Sbjct: 254 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-----LYVKNLDDSID 308
Query: 128 APEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+R+ F P+GT+ ++ + +GFV +P + K + E+NG ++ KP+ V
Sbjct: 309 DERLRKEFAPFGTITSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVA 368
Query: 181 ISTSR 185
++ +
Sbjct: 369 LAQRK 373
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 25/144 (17%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q +L +++RY +++ N++ E +R F +G +
Sbjct: 281 KFEQLKLERLNRYQG------------------VNLYVKNLDDSIDDERLRKEFAPFGTI 322
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK 116
V+ K +GFV EE A+ E+NG+I+ KPL + A ++
Sbjct: 323 TSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLAS 382
Query: 117 VFVGNLSDNTRAPEVRELFVPYGT 140
++ L+ N R ++ ++F P G
Sbjct: 383 QYMQRLA-NMRMQQMGQIFQPGGA 405
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 21/173 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDE 80
P G +FI N++ + + F +G ++ C V + YGFVH EN E
Sbjct: 160 PTIRKSGAGNVFIKNLDKAIDNKTLFDTFSVFGNILSCKVATDDEGNSLGYGFVHFENPE 219
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-----TKVFVGNLSDNTRAPE-VREL 134
+ TAI ++NG ++N+K + + SR+ T V+ NL + E +REL
Sbjct: 220 DAETAINKVNGMLLNDKQVYVGYFKSRQEREASEETHIFTNVYTKNLIPSMCTEEKIREL 279
Query: 135 FVPYGTVV-------ECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
F YG + E ++ + + FV+ P+ K ++ELNG +GK + V
Sbjct: 280 FSLYGEITSVYVPVDENEVPKGFAFVNFAKPECAAKAVEELNGRDFEGKSLYV 332
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 33/172 (19%)
Query: 50 ELIRPLFEKYGKVV-------ECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI- 101
E IR LF YG++ E +V K + FV+ E A++ELNG+ K L +
Sbjct: 274 EKIRELFSLYGEITSVYVPVDENEVPKGFAFVNFAKPECAAKAVEELNGRDFEGKSLYVG 333
Query: 102 --------EAATSRKGPNTPT--------TKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
EA RK N ++V NL D+ +R+ F +GT+ C
Sbjct: 334 RAQKKAEREAELRRKAENKRAEILKKYQGVNLYVRNLPDDMDEEGLRKEFSNFGTLTSCR 393
Query: 146 IVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR-VRQ 188
++R+ +GFV +P + K + E+NG M+ KP+ V ++ + +RQ
Sbjct: 394 VMRDDKGVSRGFGFVCFSTPEEATKAVTEMNGKMMGKKPLYVCLAQRKEIRQ 445
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ E +R F +G + C V+++ +GFV EE A+ E+N
Sbjct: 365 LYVRNLPDDMDEEGLRKEFSNFGTLTSCRVMRDDKGVSRGFGFVCFSTPEEATKAVTEMN 424
Query: 91 GQIVNEKPLKI 101
G+++ +KPL +
Sbjct: 425 GKMMGKKPLYV 435
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 127 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 186
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 187 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 246
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 247 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 306
Query: 187 RQR 189
++
Sbjct: 307 ERQ 309
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 229 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 288
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 289 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 348
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 349 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 404
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 332 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 391
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 392 RIVATKPLYVALAQRKE 408
>gi|195429621|ref|XP_002062856.1| GK19472 [Drosophila willistoni]
gi|194158941|gb|EDW73842.1| GK19472 [Drosophila willistoni]
Length = 297
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 18/140 (12%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKEL 89
KI+I N+ + + F +G ++ C+V K+ YGFVH +++E R AI+++
Sbjct: 104 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 163
Query: 90 NGQIVNEKPLKIEAATSRKG----PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
NG + N + + + R+ T ++V NLS+ +RE+F PYG +
Sbjct: 164 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 223
Query: 146 IV-------RNYGFVHIDSP 158
++ R +GFV +SP
Sbjct: 224 LMLDEEGRSRKFGFVAFESP 243
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKEL 167
K+++ NL + V + F +G ++ C++ R YGFVH DS + + I+++
Sbjct: 104 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 163
Query: 168 NGMMVDGKPMKV 179
NGM+ + + + V
Sbjct: 164 NGMLCNNQKVHV 175
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 22/164 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH + ++
Sbjct: 82 PSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDETGQSKGYGFVHFDMEQ 141
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I+++NG ++N K + + RK T V++ N+ +N E+ E
Sbjct: 142 SATQSIEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKLFTNVYIKNIDENVNDKELFE 201
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNG 169
+F YG++ C ++ R +GFV + P + K + EL+G
Sbjct: 202 MFEKYGSITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVSELHG 245
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N++ + + + +FEKYG + C V+ + +GFV E+ +E A+ EL+
Sbjct: 185 VYIKNIDENVNDKELFEMFEKYGSITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVSELH 244
Query: 91 GQIVNE-----------------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTR 127
G+ E + KIE +G N ++V NL D
Sbjct: 245 GKESPEGKTYYVGRAQKKAERQNELKRKFEQYKIERMNRYQGIN-----LYVKNLDDTID 299
Query: 128 APEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+R F +GT+ ++ + +GFV SP + K + E+N +V KP+ V
Sbjct: 300 DEHLRREFSVFGTITSAKVMMDDGRSKGFGFVCFSSPEEATKAVTEMNNRIVGTKPLYVA 359
Query: 181 ISTSR 185
++ +
Sbjct: 360 LAQRK 364
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 13/116 (11%)
Query: 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTR 127
Y +V+ +N + A+ +N +I+N P++I S++ P+ + VF+ NL N
Sbjct: 45 YAYVNFQNMADAECALDTMNFEILNGCPMRI--MWSQRDPSLRKSGVGNVFIKNLDKNID 102
Query: 128 APEVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 175
+ + F +G ++ C + ++ YGFVH D + I+++NGM+++GK
Sbjct: 103 NKAMYDTFSAFGNILSCKVAQDETGQSKGYGFVHFDMEQSATQSIEKVNGMLLNGK 158
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F +G + V+ K +GFV + EE A+ E+N
Sbjct: 289 LYVKNLDDTIDDEHLRREFSVFGTITSAKVMMDDGRSKGFGFVCFSSPEEATKAVTEMNN 348
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 349 RIVGTKPLYVALAQRKE 365
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 23 SCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KN 70
+CR M P G IFI N++ + + F +G V+ C V K
Sbjct: 114 ACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKG 173
Query: 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLS 123
YGFVH E E TAIK +NG ++N+K + + SRK + T ++V N
Sbjct: 174 YGFVHYETAEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLEEMKAQFTNIYVKNFD 233
Query: 124 DNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
E LF +G+V I R+ +GFV+ + D K ++ L+ + GK
Sbjct: 234 PEVTEEEFMALFQQFGSVTSAVIQRDDEGRSRGFGFVNFEVHDEAQKAVEGLHDLDFKGK 293
Query: 176 PMKV 179
+ V
Sbjct: 294 KLFV 297
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 87/200 (43%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N +P + E LF+++G V + ++ +GFV+ E +E + A++ L+
Sbjct: 227 IYVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDDEGRSRGFGFVNFEVHDEAQKAVEGLH 286
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
K L + E A K +++ NL D+ +R
Sbjct: 287 DLDFKGKKLFVSRAQKKAEREQELRQSYEQAKMEKMSKFQGVNLYIKNLEDDLDDDRLRT 346
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F P+G++ ++R+ +GFV SPD K + E+N M+ KP+ V ++ R
Sbjct: 347 EFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRR 406
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R ++ + + + +Q
Sbjct: 407 DVRRQQLESQIAQRNQIRMQ 426
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 121 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 180
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T V+V N+
Sbjct: 181 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYVKNIDP 240
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGKP 176
E RELF +G + I R+ +GFV ++D + + +LN G+
Sbjct: 241 EVTDEEFRELFGKFGDITSATISRDDSGKSRGFGFVNYVDHENAQTAVDDLNDKDFHGQK 300
Query: 177 MKV 179
+ V
Sbjct: 301 LYV 303
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 77/157 (49%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ N +G A+++L
Sbjct: 52 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 111
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ +P +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 112 NYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 169
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 170 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK 206
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 78/226 (34%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++P + E R LF K+G + + ++ +GFV+ + E +TA+ +LN
Sbjct: 233 VYVKNIDPEVTDEEFRELFGKFGDITSATISRDDSGKSRGFGFVNYVDHENAQTAVDDLN 292
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ + + L + EAA K ++V NL+D+ ++RE
Sbjct: 293 DKDFHGQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRE 352
Query: 134 LFVPYGTVVECDIVRN-------------------------------------------- 149
LF +GT+ ++R+
Sbjct: 353 LFSAFGTITSAKVMRDTVGAGSDSEKEETKESSEEVEEPKEEETNAKTEDEDKTDAKKSD 412
Query: 150 ---------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
+GFV SPD +K + E+N MV+GKP+ V ++ +
Sbjct: 413 KKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 458
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV + YGFVH E +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSRGYGFVHFETHDA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++E+
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKEI 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
F +G ++ R +GFV ++ D K + E+NG ++G+ M V
Sbjct: 211 FSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVDEMNGKELNGRIMFV 263
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ +F K+G V+ + +GFV EN E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVDEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTP---TTK-----VFVGNLSDNTRAPEVRE 133
G+ +N +K ++ + R+ TT+ ++V NL D +R+
Sbjct: 253 GKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+G++ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|357121842|ref|XP_003562626.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 275
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 35/188 (18%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
K+F+GN+ + LFE+ G V +VV + +GFV M EE A++
Sbjct: 84 LKLFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSTAEEVSAAVE 143
Query: 88 ELNGQIVNEKPLKIEAA----TSRKGPNTPTT--------------KVFVGNLSDNTRAP 129
+ NG +PL++ + P TP K++VGNLS
Sbjct: 144 QFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRGMGGGGGGGSFDSGNKLYVGNLSWGVDNS 203
Query: 130 EVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQ 180
+ LF G V++ ++ R +GFV S D +N I L+G+ +DG+ ++V
Sbjct: 204 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVT 263
Query: 181 ISTSRVRQ 188
++ S+ R+
Sbjct: 264 VAESKPRE 271
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++EL
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
F YG + ++ + +GFV + D K + E+NG ++G+ + V
Sbjct: 211 FSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGRQVYV 263
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 33/180 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF KYG + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK------------------VFVGNLSDNTRAPEVR 132
G+ +N + + + A +KG K ++V NL D +R
Sbjct: 253 GKELNGRQVYVGRA-QKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLR 311
Query: 133 ELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+ F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 43.5 bits (101), Expect = 0.055, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 91 PSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEE 150
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I +NG ++N K + + RK T V+V N ++ +++E
Sbjct: 151 AANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKE 210
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMKV 179
+F YGT+ ++ R +GFV + PD + + ELNG V +GK M V
Sbjct: 211 MFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N + + ++ +FEKYG + V+ + +GFV E+ + A+ ELN
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 253
Query: 91 GQIVNE-----------------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTR 127
G+ V E + LK+E +G N ++V NL D+
Sbjct: 254 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-----LYVKNLDDSID 308
Query: 128 APEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+R+ F P+GT+ ++ + +GFV +P + K + E+NG ++ KP+ V
Sbjct: 309 DERLRKEFAPFGTITSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVA 368
Query: 181 ISTSR 185
++ +
Sbjct: 369 LAQRK 373
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 25/144 (17%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q +L +++RY +++ N++ E +R F +G +
Sbjct: 281 KFEQLKLERLNRYQG------------------VNLYVKNLDDSIDDERLRKEFAPFGTI 322
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK 116
V+ K +GFV EE A+ E+NG+I+ KPL + A ++
Sbjct: 323 TSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLAS 382
Query: 117 VFVGNLSDNTRAPEVRELFVPYGT 140
++ L+ N R ++ ++F P G
Sbjct: 383 QYMQRLA-NMRMQQMGQIFQPGGA 405
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI ++NG ++N++ + + SRK T V++ N ++ ++E+
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEM 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F YG + ++ + +GFV + D K + ++NG ++GK + V + +V
Sbjct: 211 FGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ +F KYG + V+ K +GFV E E+ + A+ ++N
Sbjct: 193 VYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDDMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 90/190 (47%), Gaps = 24/190 (12%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P GT IFI N++ + + F +G ++ C + K Y
Sbjct: 104 RIMYSFRD-PSIRRSGTANIFIKNLDKAIDNKALYDTFSTFGAILSCKIATDASGQSKGY 162
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNT 126
GFV +N+E + A +LNG ++N+K + + ++ + T K V+V NL ++T
Sbjct: 163 GFVQFDNEESAKNATDKLNGMLLNDKQVYVGPFVRKQERESATNKTKFNNVYVKNLLEST 222
Query: 127 RAPEVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPM- 177
+++ +F YG + ++++ +GFV+ + + D + ++ LNG D K
Sbjct: 223 TDEDLKNIFGEYGPITSAVVMQDGDGKSKCFGFVNFENADDAARSVEALNGKKFDDKEWY 282
Query: 178 --KVQISTSR 185
K Q T R
Sbjct: 283 VGKAQKKTER 292
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 90/184 (48%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ T+ E ++ +F +YG + V+++ +GFV+ EN ++ +++ LN
Sbjct: 213 VYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGDGKSKCFGFVNFENADDAARSVEALN 272
Query: 91 GQIVNEKPL-------KIEAATSRKGPNTPTTK----------VFVGNLSDNTRAPEVRE 133
G+ ++K K E KG + K ++V NL D+ ++RE
Sbjct: 273 GKKFDDKEWYVGKAQKKTEREVELKGRFEQSLKEAVDKFQGLNLYVKNLDDSIADDKLRE 332
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF +GT+ C ++R+ GFV + + ++ + ++NG MV KP+ V ++ +
Sbjct: 333 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASRALADMNGKMVASKPLYVALAQRK 392
Query: 186 VRQR 189
+R
Sbjct: 393 EDRR 396
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 25/159 (15%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G++ + + LF + G VV V ++ YG+V+ N ++ A+ L
Sbjct: 34 LYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARALDML 93
Query: 90 NGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
N +N KP++I + + R G T +F+ NL + + F +G ++ C
Sbjct: 94 NFTPLNGKPIRIMYSFRDPSIRRSG----TANIFIKNLDKAIDNKALYDTFSTFGAILSC 149
Query: 145 DIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGK 175
I + YGFV D+ + K +LNGM+++ K
Sbjct: 150 KIATDASGQSKGYGFVQFDNEESAKNATDKLNGMLLNDK 188
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K YGFVH +E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGDILSCKVVCDENGSKGYGFVHFATEEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
+I+++NG ++N K + + SRK G T VFV N D +RE+
Sbjct: 151 ANKSIEKVNGMLLNGKKVYVGKFMSRKERYDAMGGQQKKFTNVFVKNFGDELDDEGLREM 210
Query: 135 FVPYGTVVECDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F YG +V ++++ +GFV + P D +LN ++G+ + V + +
Sbjct: 211 FERYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAENACDDLNMKDINGRILYVGRAQKK 270
Query: 186 VRQR 189
+ ++
Sbjct: 271 IERQ 274
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 32/177 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+F+ N E +R +FE+YGK+V V+ K +GFV E+ + A +L
Sbjct: 193 VFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAENACDDL 252
Query: 90 NGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N + +N + L + E + + ++V NL D+ +R
Sbjct: 253 NMKDINGRILYVGRAQKKIERQAELRNRFELMKAERANRYQGVNLYVKNLDDSLDDERLR 312
Query: 133 ELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
+ F+P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 KEFMPFGTITSAKVMSEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 369
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 297 LYVKNLDDSLDDERLRKEFMPFGTITSAKVMSEGGRSKGFGFVCFSSPEEATKAVTEMNG 356
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV+ KPL + A ++ F+ +S
Sbjct: 357 RIVSTKPLYVALAQRKEDRKAHLASQFMQRMS 388
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 18/180 (10%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVV----ECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
F P +V E + +GFV + D K + E+NG ++GK + V + +V ++
Sbjct: 211 FGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 270
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 34/179 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 249
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 250 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 309
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 310 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 368
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 293 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 352
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV KPL + A ++ T ++ ++
Sbjct: 353 RIVATKPLYVALAQRKEERQAHLTNQYMQRMA 384
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 91 PSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEE 150
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I +NG ++N K + + RK T V+V N ++ +++E
Sbjct: 151 AANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKE 210
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMKV 179
+F YGT+ ++ R +GFV + PD + + ELNG V +GK M V
Sbjct: 211 MFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N + + ++ +FEKYG + V+ + +GFV E+ + A+ ELN
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 253
Query: 91 GQIVNE-----------------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTR 127
G+ V E + LK+E +G N ++V NL D+
Sbjct: 254 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-----LYVKNLDDSID 308
Query: 128 APEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+R+ F P+GT+ ++ + +GFV +P + K + E+NG ++ KP+ V
Sbjct: 309 DERLRKEFAPFGTITSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVA 368
Query: 181 ISTSR 185
++ +
Sbjct: 369 LAQRK 373
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 25/144 (17%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q +L +++RY +++ N++ E +R F +G +
Sbjct: 281 KFEQLKLERLNRYQG------------------VNLYVKNLDDSIDDERLRKEFAPFGTI 322
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK 116
V+ K +GFV EE A+ E+NG+I+ KPL + A ++
Sbjct: 323 TSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLAS 382
Query: 117 VFVGNLSDNTRAPEVRELFVPYGT 140
++ L+ N R ++ ++F P G
Sbjct: 383 QYMQRLA-NMRMQQMGQIFQPGGA 405
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|157823445|ref|NP_001099899.1| polyadenylate-binding protein 4-like [Rattus norvegicus]
gi|149027259|gb|EDL82942.1| rCG37805 [Rattus norvegicus]
Length = 370
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 89/190 (46%), Gaps = 21/190 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+FI N++ + + F +GK++ V+ K YGFVH ++ AI+E+NG
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGSKGYGFVHYQDQRAADRAIEEMNG 159
Query: 92 QIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
+++ + L + SRK T V++ N D+ +R +F YG +
Sbjct: 160 KLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSV 219
Query: 145 DIVRN-------YGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVV 196
++++ +GFV DS K ++++NG ++G+ + V + +V ++ + E+
Sbjct: 220 KVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMF 279
Query: 197 IGQKSVPVQA 206
K ++A
Sbjct: 280 EQMKKERIRA 289
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 77/175 (44%), Gaps = 31/175 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N E +R +F KYG+ + V+K+ +GFV ++ + + A++++N
Sbjct: 192 VYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMN 251
Query: 91 GQIVN---------------EKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ +N + LK E + K+++ NL D +R+
Sbjct: 252 GRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRK 311
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQI 181
F +G++ ++ + +G + SP K + E+NG ++ KP+ + +
Sbjct: 312 EFSVFGSICRVKVMQEAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIAL 366
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 20/168 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C V K YGFV E +E
Sbjct: 119 PSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVATEMSGESKGYGFVQFELEE 178
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVRELF 135
+ AI +LNG ++N+K + + ++ N V+V NLS++T ++E+F
Sbjct: 179 AAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNNVYVKNLSESTTEDNLKEIF 238
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 175
+G + ++R +GFV+ ++P D + +++LNG D K
Sbjct: 239 GKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDK 286
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 91/190 (47%), Gaps = 43/190 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ + ++ +F K+G + V++ +GFV+ EN ++ A+++LN
Sbjct: 220 VYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLN 279
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ ++K + EAA +G T +++ NL D+
Sbjct: 280 GKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQG-----TNLYLKNLDDSIDD 334
Query: 129 PE-VRELFVPYGTVVECDIVRNY-------GFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
E ++E+F +GT+ C ++R+ GFV S D ++ + +NG M+ KP+ V
Sbjct: 335 DEKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYV 394
Query: 180 QISTSRVRQR 189
++ + +R
Sbjct: 395 ALAQRKEERR 404
>gi|326510421|dbj|BAJ87427.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510771|dbj|BAJ91733.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 35/189 (18%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
K+F+GN+ + LFE+ G V +VV + +GFV M + EE A++
Sbjct: 87 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 146
Query: 88 ELNGQIVNEKPLKIEAA----TSRKGPNTP--------------TTKVFVGNLSDNTRAP 129
+ NG +PL++ + P TP K++VGNLS
Sbjct: 147 QFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMGGGGGGGSFDSANKLYVGNLSWGVDNS 206
Query: 130 EVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQ 180
+ LF G V++ ++ R +GFV S D +N I L+G+ +DG+ ++V
Sbjct: 207 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVT 266
Query: 181 ISTSRVRQR 189
++ S+ R++
Sbjct: 267 VAESKPREQ 275
>gi|242048440|ref|XP_002461966.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
gi|241925343|gb|EER98487.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
Length = 294
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 24/176 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+++GN+ E + LFE+ G V +V+ N +GFV M EE A++
Sbjct: 117 KVYVGNLPYDVDSERLAQLFEQAGVVEVAEVIYNRETDRSRGFGFVTMSTVEEADKAVEM 176
Query: 89 LNGQIVNEKPLKIEAATSRKG-------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
L+ VN + L + A R + P+ +++VGNL ++ ++F +G V
Sbjct: 177 LHRYDVNGRLLTVNKAAPRGSRVDRPPRQSGPSLRIYVGNLPWQVDDSKLVQMFSEHGKV 236
Query: 142 VECDIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQ 188
V+ +V R +GFV + + D ++ I L+G +DG+ ++V ++ R R+
Sbjct: 237 VDARVVYDRETGRSRGFGFVTMATQDELDDAIAALDGQSLDGRALRVNVAEERPRR 292
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
+ +I++GN+ + +F ++GKVV+ VV + +GFV M +E AI
Sbjct: 209 SLRIYVGNLPWQVDDSKLVQMFSEHGKVVDARVVYDRETGRSRGFGFVTMATQDELDDAI 268
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ ++ + L++ A R
Sbjct: 269 AALDGQSLDGRALRVNVAEER 289
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 21/180 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N+N + + F +G ++ C VV K +GFVH E +E
Sbjct: 91 PSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGSKGHGFVHFETEEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK G T T V++ N D + L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G V+ ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKV 270
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + + LF ++G+V+ V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ +N K + K E T +G ++V NL D +++
Sbjct: 253 GKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALA 368
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E ++ F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 129
+IV KPL + A ++ T ++ ++ P
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQYIQRMASVRSGP 393
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 258 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 317
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 318 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 377
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 378 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 437
Query: 187 RQR 189
++
Sbjct: 438 ERQ 440
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 360 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 419
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------VGNLSDNTRAPEVRE 133
G+ +N K + + A + T + F V NL D +R+
Sbjct: 420 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 479
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 480 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 538
Score = 43.9 bits (102), Expect = 0.036, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 463 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 522
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 129
+IV KPL + A ++ T ++ ++ P
Sbjct: 523 RIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP 560
>gi|340546033|gb|AEK51815.1| cytoplasmic poly(A) binding protein 1 [Ichthyophis bannanicus]
Length = 177
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 42 NVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNGQIVN 95
N++ + + F +G ++ C VV K Y FVH E + AI+++NG ++N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLN 61
Query: 96 EKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
++ + + SRK T V++ N D+ ++E+F YG + ++
Sbjct: 62 DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMDDERLKEMFSKYGKTLSVKVMT 121
Query: 148 ------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRP 190
+ +GFV + D NK ++E+NG V+GK + V + +V ++
Sbjct: 122 DSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVERQA 171
Score = 42.7 bits (99), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ +F KYGK + V+ K +GFV E E+ A++E+N
Sbjct: 90 VYIKNFGDDMDDERLKEMFSKYGKTLSVKVMTDSTGKSKGFGFVSFEKHEDANKAVEEMN 149
Query: 91 GQIVNEK 97
G+ VN K
Sbjct: 150 GKDVNGK 156
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 91 PSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEE 150
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I +NG ++N K + + RK T V+V N ++ +++E
Sbjct: 151 AANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKE 210
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMKV 179
+F YGT+ ++ R +GFV + PD + + ELNG V +GK M V
Sbjct: 211 MFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N + + ++ +FEKYG + V+ + +GFV E+ + A+ ELN
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 253
Query: 91 GQIVNE-----------------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTR 127
G+ V E + LK+E +G N ++V NL D+
Sbjct: 254 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-----LYVKNLDDSID 308
Query: 128 APEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+R+ F P+GT+ ++ + +GFV +P + K + E+NG ++ KP+ V
Sbjct: 309 DERLRKEFAPFGTITSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVA 368
Query: 181 ISTSR 185
++ +
Sbjct: 369 LAQRK 373
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 25/144 (17%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q +L +++RY +++ N++ E +R F +G +
Sbjct: 281 KFEQLKLERLNRYQG------------------VNLYVKNLDDSIDDERLRKEFAPFGTI 322
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK 116
V+ K +GFV EE A+ E+NG+I+ KPL + A ++
Sbjct: 323 TSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLAS 382
Query: 117 VFVGNLSDNTRAPEVRELFVPYGT 140
++ L+ N R ++ ++F P G
Sbjct: 383 QYMQRLA-NMRMQQMGQIFQPGGA 405
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 92/192 (47%), Gaps = 31/192 (16%)
Query: 29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEE 81
S++ I++ N+ T+ E ++ +FE++G + V+++ +GFV+ EN ++
Sbjct: 203 ALSNIKFNNIYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDADGKSKCFGFVNFENVDD 262
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSR-------KG---------PNTPTTKVFVGNLSDN 125
A++ LNG+ ++K + A + KG +++ NL D+
Sbjct: 263 AAKAVEALNGKKFDDKEWYVGKAQKKSERELELKGRFEQSLESVEKYQAVNLYIKNLDDS 322
Query: 126 TRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPM 177
+++ELF +GT+ C ++ R GFV +P + ++ + ELNG MV KP+
Sbjct: 323 VNDEKLKELFSDFGTITSCKVMHDPSGISRGSGFVAFSTPEEASRALAELNGKMVVSKPL 382
Query: 178 KVQISTSRVRQR 189
V + + +R
Sbjct: 383 YVAPAQRKEERR 394
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 28/176 (15%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C V K YGFV +++E
Sbjct: 111 PSIRKSGMANIFIKNLDKTIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEE 170
Query: 81 EGRTAIKELNGQIVNEKPLKI---------EAATSRKGPNTPTTKVFVGNLSDNTRAPEV 131
+ AI +LNG ++N+K + + ++A S N ++V NL+++T ++
Sbjct: 171 AAQNAIDKLNGMLINDKQVYVGNFLRKQERDSALS----NIKFNNIYVKNLAESTTDEDL 226
Query: 132 RELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
+ +F +G + ++R+ +GFV+ ++ D K ++ LNG D K V
Sbjct: 227 KSIFEEHGAITSAVVMRDADGKSKCFGFVNFENVDDAAKAVEALNGKKFDDKEWYV 282
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 76/157 (48%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++ + + LF + G+VV V ++ YG+V+ N ++ A+ L
Sbjct: 33 LYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 92
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N +N KPL+I S + P+ + +F+ NL + + F +G ++ C +
Sbjct: 93 NFTPLNNKPLRI--MYSHRDPSIRKSGMANIFIKNLDKTIDHKALHDTFSSFGNILSCKV 150
Query: 147 V-------RNYGFVHIDSPDINK-CIKELNGMMVDGK 175
+ YGFV DS + + I +LNGM+++ K
Sbjct: 151 ATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLINDK 187
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 3 RFDQQQLV--KVSRYSNNQINISCRNMPGFSSVGTFK---IFIGNVNPGTSVELIRPLFE 57
+FD ++ K + S ++ + R SV ++ ++I N++ + E ++ LF
Sbjct: 274 KFDDKEWYVGKAQKKSERELELKGRFEQSLESVEKYQAVNLYIKNLDDSVNDEKLKELFS 333
Query: 58 KYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
+G + C V+ + GFV EE A+ ELNG++V KPL + A ++
Sbjct: 334 DFGTITSCKVMHDPSGISRGSGFVAFSTPEEASRALAELNGKMVVSKPLYVAPAQRKE 391
>gi|167391953|ref|XP_001739964.1| nucleolysin TIAR [Entamoeba dispar SAW760]
gi|165896141|gb|EDR23641.1| nucleolysin TIAR, putative [Entamoeba dispar SAW760]
Length = 306
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 81/172 (47%), Gaps = 27/172 (15%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTA 85
G++KIF+G + P + +L+ F+K+G+V + V+ K YGFV E+ TA
Sbjct: 127 GSYKIFVGGLQPEVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETA 186
Query: 86 IKELNGQIVNEKPLKIEAATSRKGPNTPTTK----------------VFVGNLSDNTRAP 129
++ +NG+ + + +K+ TS T K V++GN+ N +
Sbjct: 187 MQMMNGEKLEGRNIKVNWVTSNIASKTEQPKRSYDEINNETSIQNCTVYIGNIPKNVESD 246
Query: 130 EVRELFVPYGTVVECDIVRNYGFVHI---DSPDINKCIKELNGMMVDGKPMK 178
++++L YG++ E + ++ G+ I I NG +++G ++
Sbjct: 247 DLKQLLAEYGSIEEVRLNKDKGYAFIKFSKHESATSAILMCNGKIINGSTLR 298
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 16/155 (10%)
Query: 51 LIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103
L+ +F G VV C ++++ YGFV + R A ++G++V + LK+
Sbjct: 58 LLGRIFSIVGHVVSCKIMRDKSGTHAGYGFVEFVDSTTARFAKDNMDGRVVYGRELKVNW 117
Query: 104 ATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFV-H 154
+ + + N + K+FVG L + + F +G V + ++ + YGFV
Sbjct: 118 SYTAQQENQGSYKIFVGGLQPEVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKGYGFVTF 177
Query: 155 IDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
I D ++ +NG ++G+ +KV TS + +
Sbjct: 178 IRKEDAETAMQMMNGEKLEGRNIKVNWVTSNIASK 212
Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--YGFVHMENDEEGRTAIKE 88
+S+ ++IGN+ + ++ L +YG + E + K+ Y F+ E +AI
Sbjct: 227 TSIQNCTVYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKDKGYAFIKFSKHESATSAILM 286
Query: 89 LNGQIVNEKPLK 100
NG+I+N L+
Sbjct: 287 CNGKIINGSTLR 298
>gi|162463757|ref|NP_001105347.1| nucleic acid binding protein1 [Zea mays]
gi|168526|gb|AAA33486.1| nucleic acid-binding protein [Zea mays]
gi|195637380|gb|ACG38158.1| ribonucleoprotein [Zea mays]
gi|219884029|gb|ACL52389.1| unknown [Zea mays]
gi|414884557|tpg|DAA60571.1| TPA: nucleic acid binding protein1 [Zea mays]
Length = 303
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 24/176 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+++GN+ E + LF++ G V E D + +GFV M EE A++
Sbjct: 126 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEM 185
Query: 89 LNGQIVNEKPLKIEAATSRKG-------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
+ VN + L + A R + P+ +++VGNL + ELF +G V
Sbjct: 186 FHRYDVNGRLLTVNKAAPRGSRVDRPPRQSGPSLRIYVGNLPWQVDDSRLVELFSEHGKV 245
Query: 142 VECDIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQ 188
V+ +V R +GFV + S D ++ I L+G +DG+ ++V ++ R R+
Sbjct: 246 VDARVVYDRETGRSRGFGFVTMASQDELDDAIAALDGQSLDGRALRVNVAEERPRR 301
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
+ +I++GN+ + LF ++GKVV+ VV + +GFV M + +E AI
Sbjct: 218 SLRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRETGRSRGFGFVTMASQDELDDAI 277
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ ++ + L++ A R
Sbjct: 278 AALDGQSLDGRALRVNVAEER 298
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + I F +G ++ C V K YGFVH E +E
Sbjct: 82 PSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGTSKGYGFVHFETEE 141
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
T+I ++NG ++N K + + RK T V+V N +++ +++E
Sbjct: 142 AANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKE 201
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGM-MVDGKPMKV 179
F PYG + ++ + +GFV ++ + + ++ LNG M DGK + V
Sbjct: 202 FFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGDGKTLYV 256
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 33/181 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N E ++ FE YGK+ V+ K +GFV E E A++ LN
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALN 244
Query: 91 GQIV------------------NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G+ + E K E ++ + ++V NL D+ +R
Sbjct: 245 GKDMGDGKTLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLR 304
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSPDINKC-IKELNGMMVDGKPMKVQISTS 184
+ F YGT+ ++ + +GFV SP+ C + ELNG ++ KP+ V ++
Sbjct: 305 KEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQR 364
Query: 185 R 185
+
Sbjct: 365 K 365
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRT 84
SV +++ N++ E +R F YG + V+ K +GFV + E
Sbjct: 283 SVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATC 342
Query: 85 AIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVP 137
A+ ELNG+++ KPL + A ++ ++ +++ R ++ +LF P
Sbjct: 343 AVTELNGRVIGSKPLYVALAQRKEERKAHLASQYMRHMT-GMRMQQLGQLFPP 394
>gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Mesembryanthemum crystallinum]
Length = 306
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 24/176 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ E + +F+ G V E D + +GFV M EE A++
Sbjct: 129 KLFVGNLPYDVDSERLAQIFDGAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 188
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
LNG +N + L + A R + P P+ +V+VGNL + + ++F +G V
Sbjct: 189 LNGFDMNGRLLTVNKAAPRGSRPERPPREFEPSCRVYVGNLPWDVDNARLEQVFSEHGKV 248
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
+ +V R +GFV + S ++N I L+G +DG+ ++V ++ R R+
Sbjct: 249 LSARVVSDRETGRSRGFGFVSMASESEMNDAIAALDGQTLDGRAIRVNVAEERPRR 304
>gi|99029149|gb|ABF60862.1| GRSF [Lilium longiflorum]
Length = 207
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 24/175 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKV--------VECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ P E + LF+K G V E D + +GFV M EE A++
Sbjct: 31 KLFVGNI-PYDDSEKLANLFDKAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAERAVEM 89
Query: 89 LNGQIVNEKPLKIEAATSRKG------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVV 142
L+ +N + L + A R + P+ +V+VGNL + +LF +G V+
Sbjct: 90 LHRYDINGRNLTVNKAAPRGSRPERPRESDPSLRVYVGNLPWQVDDSRLEQLFSEHGKVI 149
Query: 143 ECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
+ +V R +GFV + + +++ I L+G ++G+ ++V ++ R R+
Sbjct: 150 DARVVYDRQSGRSRGFGFVTLATREEVDDAIAALDGQSLEGRALRVNVAEERPRR 204
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
+ ++++GN+ + LF ++GKV++ VV + +GFV + EE AI
Sbjct: 121 SLRVYVGNLPWQVDDSRLEQLFSEHGKVIDARVVYDRQSGRSRGFGFVTLATREEVDDAI 180
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ + + L++ A R
Sbjct: 181 AALDGQSLEGRALRVNVAEER 201
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 94/200 (47%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++ N++ S E + LFE YGK+ + K+ +GFV+ EN E A+ ELN
Sbjct: 234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELN 293
Query: 91 GQIVNEKPLKIEAATSRKG---------PNTPTTK--------VFVGNLSDNTRAPEVRE 133
+ +N + + + A ++ NT K +F+ NL D + ++ E
Sbjct: 294 DKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEE 353
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+G++ ++ + +GFV SP + K I E+N M+ GKP+ V ++ +
Sbjct: 354 EFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRK 413
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R +++ + + + +Q
Sbjct: 414 DVRRSQLEQQIQARNQMRMQ 433
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N++P + + F +GK++ C V K +
Sbjct: 122 CRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCF 181
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AI+ +NG ++N++ + + S+K + T V+ N+
Sbjct: 182 GFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDL 241
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKP 176
+ E ++LF YG + + ++ +GFV+ ++ + K + ELN ++G+
Sbjct: 242 DFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQK 301
Query: 177 MKV 179
+ V
Sbjct: 302 IYV 304
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G +NP + L+ +F G+V V ++ Y +V+ E+G AI++L
Sbjct: 53 LYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDL 112
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ +P +I S++ P+ +F+ NL + + F +G ++ C +
Sbjct: 113 NYSLIEGRPCRI--MWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKV 170
Query: 147 VRN-------YGFVHIDSPDINKCIKE-LNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
+ +GFVH ++ + + E +NGM+++ + + V S+ + +E+
Sbjct: 171 ATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEM 227
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 85/173 (49%), Gaps = 20/173 (11%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I IS R+ P G +FI N++ + +R F +G V+ C V K Y
Sbjct: 107 RIMISNRD-PSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGY 165
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLK----IEAATSRKGPNTPTTKVFVGNLSDNTR 127
GFV E++E +I++LNG ++N+K + I + + T V+V NL + T
Sbjct: 166 GFVQFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTT 225
Query: 128 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMV 172
+++ LF P+GT+ ++ + +GFV+ + D +++L+G ++
Sbjct: 226 DDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVL 278
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 33/181 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N+ T+ + ++ LF +G + V+ K +GFV+ +N + A+++L+
Sbjct: 215 VYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLD 274
Query: 91 GQIVN----------------EKPLKIEAATSRKG--PNTPTTKVFVGNLSDNTRAPEVR 132
G ++ E L+ + RK +++ NL D+ +++
Sbjct: 275 GTVLGDDKTLYVGRAQRKAEREAELRAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLK 334
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTS 184
ELF YGT+ C ++ + GFV SPD K + E+NG M KP+ V ++
Sbjct: 335 ELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQR 394
Query: 185 R 185
+
Sbjct: 395 K 395
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEG 82
F + ++I N++ E ++ LF +YG + C V+ K GFV + +E
Sbjct: 311 FEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEA 370
Query: 83 RTAIKELNGQIVNEKPLKIEAATSRK 108
A+ E+NG++ KPL + A ++
Sbjct: 371 TKALNEMNGKMKGRKPLYVAVAQRKE 396
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 21/171 (12%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P G +FI N++ +L+ F +G V+ C V K Y
Sbjct: 117 RIMFSHRD-PSIRKSGYGNVFIKNLDSTLDNKLLHETFAAFGTVLSCKVAVDSNGQSKGY 175
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNT 126
GFV EN+E AI L+G +N+K + + + +R + T V+V NLS+
Sbjct: 176 GFVQFENEESAERAISFLDGMCLNDKQVYVGFFVRQQERTRTNGSPKFTNVYVKNLSETI 235
Query: 127 RAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNG 169
++ ++F YGT+ ++ R +GFV+ PD +++LNG
Sbjct: 236 TNEDLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAAAAVEKLNG 286
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 83/178 (46%), Gaps = 33/178 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ + E + +F YG + V+K+ +GFV+ ++ + A+++LN
Sbjct: 226 VYVKNLSETITNEDLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAAAAVEKLN 285
Query: 91 GQIVN------------------EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G + E K E + + +++ NL DN +++
Sbjct: 286 GTTAHDDKAWYVGRAQRKSEREAELKAKFEQERNSRYERLKAANLYLKNLDDNINDVKLK 345
Query: 133 ELFVPYGTVVECDIVRNY-------GFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
ELF +G++ C ++ ++ GFV +P + ++ +KE+NG M+ KP+ V I+
Sbjct: 346 ELFSEFGSITSCKVMLDHQGVSKGSGFVAFSTPEEASRALKEMNGKMIGRKPLYVAIA 403
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 77/163 (47%), Gaps = 21/163 (12%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK 87
+++G++ + E + LF + +VV V ++ YG+V+ N ++ A+K
Sbjct: 45 LSLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMK 104
Query: 88 ELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
LN +N KP++I S + P+ + VF+ NL + E F +GTV+ C
Sbjct: 105 ALNFTPLNGKPIRI--MFSHRDPSIRKSGYGNVFIKNLDSTLDNKLLHETFAAFGTVLSC 162
Query: 145 DIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
+ + YGFV ++ + + I L+GM ++ K + V
Sbjct: 163 KVAVDSNGQSKGYGFVQFENEESAERAISFLDGMCLNDKQVYV 205
Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ + ++ LF ++G + C V+ K GFV EE A+KE+N
Sbjct: 330 LYLKNLDDNINDVKLKELFSEFGSITSCKVMLDHQGVSKGSGFVAFSTPEEASRALKEMN 389
Query: 91 GQIVNEKPLKIEAATSRK 108
G+++ KPL + A ++
Sbjct: 390 GKMIGRKPLYVAIAQRKE 407
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 117 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCIKEL 167
++VG+L N ++ +LF VV + R+ YG+V+ +P D +K L
Sbjct: 47 LYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKAL 106
Query: 168 NGMMVDGKPMKVQIS 182
N ++GKP+++ S
Sbjct: 107 NFTPLNGKPIRIMFS 121
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 85/173 (49%), Gaps = 20/173 (11%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I IS R+ P G +FI N++ + +R F +G V+ C V K Y
Sbjct: 107 RIMISNRD-PSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGY 165
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLK----IEAATSRKGPNTPTTKVFVGNLSDNTR 127
GFV E++E +I++LNG ++N+K + I + + T V+V NL + T
Sbjct: 166 GFVQFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTT 225
Query: 128 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMV 172
+++ LF P+GT+ ++ + +GFV+ + D +++L+G ++
Sbjct: 226 DDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVL 278
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 33/181 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N+ T+ + ++ LF +G + V+ K +GFV+ +N + A+++L+
Sbjct: 215 VYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLD 274
Query: 91 GQIVN----------------EKPLKIEAATSRKG--PNTPTTKVFVGNLSDNTRAPEVR 132
G ++ E LK + RK +++ NL D+ +++
Sbjct: 275 GTVLGDDKTLYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLK 334
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTS 184
ELF YGT+ C ++ + GFV SPD K + E+NG M KP+ V ++
Sbjct: 335 ELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQR 394
Query: 185 R 185
+
Sbjct: 395 K 395
Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEG 82
F + ++I N++ E ++ LF +YG + C V+ K GFV + +E
Sbjct: 311 FEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEA 370
Query: 83 RTAIKELNGQIVNEKPLKIEAATSRK 108
A+ E+NG++ KPL + A ++
Sbjct: 371 TKALNEMNGKMKGRKPLYVAVAQRKE 396
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N +R +F ++GK + V+ K +GFV+ E EE + A+ ++N
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVADMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K L+ ++ RK +V +V NL D +R+
Sbjct: 253 GKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F PYGT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G +FI N++ + + F +G ++ C VV + +GFVH E E
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+ +NG ++N++ + + SRK T V++ N D+ +RE+
Sbjct: 151 ATRAIETMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREI 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV+ + + K + ++NG ++G+ + V + R+
Sbjct: 211 FSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRL 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + +VSRY +++ N++ G E +R F YG +
Sbjct: 279 KFEQMKQERVSRYQG------------------VNLYVKNLDDGIDDERLRKEFSPYGTI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV+ KPL + A ++
Sbjct: 321 TSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 159
GP P ++VG+L + + E F P G ++ + R+ Y +++ P D
Sbjct: 5 GPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPAD 64
Query: 160 INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIG 198
+ + +N ++ G+P+++ S ++ PG+ + +G
Sbjct: 65 AERALDTMNFEVIKGRPVRIMWS----QRDPGLRKSGVG 99
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI ++NG ++N++ + + SRK T V++ N ++ ++E+
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEM 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
F YG + ++ + +GFV + D K + ++NG ++GK + V
Sbjct: 211 FGKYGPALSVKVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYV 263
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 29/145 (20%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ +F KYG + V+ K +GFV E E+ + A+ ++N
Sbjct: 193 VYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDSGKSKGFGFVSFERHEDAQKAVDDMN 252
Query: 91 GQIVNEKPL------KIEAATS--RKGPNTPTTKV--------FVGNLSDNTRAPEVREL 134
G+ +N K + K+E T RK ++ +V NL D +R+
Sbjct: 253 GKDMNGKAIYVGRAKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKE 312
Query: 135 FVPYGTVVECDIV------RNYGFV 153
F P+GT+ ++ + +GFV
Sbjct: 313 FSPFGTITSAKVMMEGGRSKGFGFV 337
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 125 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 184
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + + ++K + T V+V NL
Sbjct: 185 GFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEP 244
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGK 175
E RELF YG + + R+ +GFV+ ++ +++LN G+
Sbjct: 245 EVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQ 304
Query: 176 PMKV 179
+ V
Sbjct: 305 KLYV 308
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ N +G A+++L
Sbjct: 56 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 116 NYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 173
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + IK +NGM+++ K
Sbjct: 174 AQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEK 210
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 25/137 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++ N+ P + E R LFEKYG++ + ++ +GFV+ N + A+++L
Sbjct: 237 VYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDL 296
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N + + L + EAA K ++V NL+D+ ++R
Sbjct: 297 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLR 356
Query: 133 ELFVPYGTVVECDIVRN 149
+LF+ +G + ++R+
Sbjct: 357 DLFIGFGNITSARVMRD 373
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 21/173 (12%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+FI N++ + + F +G ++ C VV K Y FVH E E AI+++NG
Sbjct: 2 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 61
Query: 92 QIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
++N++ + + SRK T V++ N + ++ELF +G +
Sbjct: 62 LLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSV 121
Query: 145 DIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
++R+ +GFV + D NK + E+NG + GK + V + +V ++
Sbjct: 122 KVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQ 174
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 90/191 (47%), Gaps = 35/191 (18%)
Query: 52 IRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELNGQIVN--------- 95
++ LF ++GK + V+++ +GFV E E+ A+ E+NG+ ++
Sbjct: 108 LKELFSQFGKTLSVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRA 167
Query: 96 EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRELFVPYGTVVECDIV 147
+K ++ +A RK ++ ++ NL D ++R+ F P+G++ ++
Sbjct: 168 QKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM 227
Query: 148 ------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVD----EVV 196
+ +GFV S + K + E+NG +V KP+ V ++ + ++ + + V
Sbjct: 228 LEDGRSKGFGFVCFPSREEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQHV 287
Query: 197 IGQKSVPVQAL 207
G +++P A+
Sbjct: 288 AGLRALPAGAI 298
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
++I N++ E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 197 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFPSREEATKAVTEMNG 256
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 257 RIVGSKPLYVALAQRKE 273
>gi|407038416|gb|EKE39116.1| RNA-binding protein TIA-1, putative [Entamoeba nuttalli P19]
Length = 306
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 27/172 (15%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTA 85
G +KIF+G + P + +L+ F+K+G+V + V+ K YGFV E+ TA
Sbjct: 127 GNYKIFVGGLQPEVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETA 186
Query: 86 IKELNGQIVNEKPLKIEAATSRKGPNTPTTK----------------VFVGNLSDNTRAP 129
++ +NG+ + + +K+ TS T K V++GN+ N +
Sbjct: 187 MQMMNGEKLEGRNIKVNWVTSNIASKTEQPKRSYDEINNETSSQNCTVYIGNIPKNVESD 246
Query: 130 EVRELFVPYGTVVECDIVRNYGFVHI---DSPDINKCIKELNGMMVDGKPMK 178
++++L YG++ E + ++ G+ I I NG +++G ++
Sbjct: 247 DLKQLLAEYGSIEEVRLNKDKGYAFIKFSKHESATSAILMCNGKIINGSTLR 298
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 16/155 (10%)
Query: 51 LIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103
L+ +F G VV C ++++ YGFV + R A ++G++V + LK+
Sbjct: 58 LLGRIFSIVGHVVSCKIMRDKSGVHAGYGFVEFVDSTTARFAKDNMDGRVVYGRELKVNW 117
Query: 104 ATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFV-H 154
+ + + N K+FVG L + + F +G V + ++ + YGFV
Sbjct: 118 SYTAQQENQGNYKIFVGGLQPEVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKGYGFVTF 177
Query: 155 IDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
I D ++ +NG ++G+ +KV TS + +
Sbjct: 178 IRKEDAETAMQMMNGEKLEGRNIKVNWVTSNIASK 212
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 86/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G +FI N+ + + F +G ++ C VV + +GFVH E E
Sbjct: 91 PGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
+ AI+ +NG ++N++ + + SR+ T ++V NL + +++L
Sbjct: 151 AQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G ++ ++R+ +GFV+ + D K + ++NG V G+ + V + RV
Sbjct: 211 FSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ ++ LF ++GK++ V+++ +GFV+ E E+ + A+ ++N
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMN 252
Query: 91 GQIVNEKPLKIEAATSR-----------------KGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ V+ + L + A R + ++V NL D+ ++R+
Sbjct: 253 GKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F PYG + ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFAPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 24/127 (18%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
RF+Q + +++RY +++ N++ E +R F YG +
Sbjct: 279 RFEQMKQDRLTRYQG------------------VNLYVKNLDDSIDDEKLRKEFAPYGMI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK 116
V+ K +GFV + EE A+ E+NG+IV KPL + A ++ T
Sbjct: 321 TSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTN 380
Query: 117 VFVGNLS 123
++ LS
Sbjct: 381 QYIQRLS 387
>gi|67465872|ref|XP_649094.1| RNA-binding protein TIA-1 [Entamoeba histolytica HM-1:IMSS]
gi|56465456|gb|EAL43711.1| RNA-binding protein TIA-1, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449705857|gb|EMD45818.1| RNA-binding protein TIA-1, putative [Entamoeba histolytica KU27]
Length = 306
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 27/172 (15%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTA 85
G +KIF+G + P + +L+ F+K+G+V + V+ K YGFV E+ TA
Sbjct: 127 GNYKIFVGGLQPEVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETA 186
Query: 86 IKELNGQIVNEKPLKIEAATSRKGPNTPTTK----------------VFVGNLSDNTRAP 129
++ +NG+ + + +K+ TS T K V++GN+ N +
Sbjct: 187 MQMMNGEKLEGRNIKVNWVTSNIASKTEQPKRSYDEINNETSSQNCTVYIGNIPKNVESD 246
Query: 130 EVRELFVPYGTVVECDIVRNYGFVHI---DSPDINKCIKELNGMMVDGKPMK 178
++++L YG++ E + ++ G+ I I NG +++G ++
Sbjct: 247 DLKQLLAEYGSIEEVRLNKDKGYAFIKFSKHESATSAILMCNGKIINGSTLR 298
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 16/152 (10%)
Query: 51 LIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103
L+ +F G VV C ++++ YGFV + R A ++G++V + LK+
Sbjct: 58 LLGRIFSIVGHVVSCKIMRDKSGVHAGYGFVEFVDSTTARFAKDNMDGRVVYGRELKVNW 117
Query: 104 ATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFV-H 154
+ + + N K+FVG L + + F +G V + ++ + YGFV
Sbjct: 118 SYTAQQENQGNYKIFVGGLQPEVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKGYGFVTF 177
Query: 155 IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
I D ++ +NG ++G+ +KV TS +
Sbjct: 178 IRKEDAETAMQMMNGEKLEGRNIKVNWVTSNI 209
>gi|323348433|gb|EGA82678.1| Nsr1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 254
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 29/165 (17%)
Query: 50 ELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101
E ++ FE G V+ V+ + YG+V EN AI+E+ G+ ++ +P+
Sbjct: 22 EWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINC 81
Query: 102 EAATSRKG------------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVV------- 142
+ +TS+ P+ P+ +F+GNLS N + ELF +G VV
Sbjct: 82 DMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTH 141
Query: 143 -ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
E + + +G+V + D K + L G +D +P+++ S+ R
Sbjct: 142 PETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 186
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKEL 89
+F+GN++ + I LF K+G+VV E + K +G+V N E+ + A+ L
Sbjct: 109 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 168
Query: 90 NGQIVNEKPLKIEAATSR 107
G+ ++ +P++++ ++ R
Sbjct: 169 QGEYIDNRPVRLDFSSPR 186
>gi|302785327|ref|XP_002974435.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
gi|300158033|gb|EFJ24657.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
Length = 642
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 90/184 (48%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ T+ + ++ +F ++G + V+++ +GFV+ EN ++ A++ELN
Sbjct: 218 VYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELN 277
Query: 91 GQIVNEKPLKIEAATSR-----------------KGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ +++K + A + + +++ NL D ++RE
Sbjct: 278 GKKMDDKEWYVGRAQKKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTIDDDKLRE 337
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF +GT++ C ++R+ GFV + + N+ + E+NG MV KP+ V ++ R
Sbjct: 338 LFHGFGTIISCKVMRDPQGHSKGSGFVAFSTTEEANRAMTEMNGRMVANKPIYVALAQKR 397
Query: 186 VRQR 189
+R
Sbjct: 398 DERR 401
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 21/181 (11%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P G IFI N++ + + F ++G ++ C V + Y
Sbjct: 109 RIMFSHRD-PSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQSRGY 167
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNT 126
GFV E ++ ++AIK++NG ++ EK + + R+ G T V+V NL D T
Sbjct: 168 GFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTGGVTKFNNVYVKNLGDAT 227
Query: 127 RAPEVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMK 178
+++ +F +G + ++R+ +GFV+ + + D ++ELNG +D K
Sbjct: 228 TDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWY 287
Query: 179 V 179
V
Sbjct: 288 V 288
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 74/154 (48%), Gaps = 21/154 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++P + + +F + V+ V ++ Y +V+ ++ A++ L
Sbjct: 39 LYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEML 98
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N +VN KP++I S + P+ + +F+ NL + + + F +G ++ C +
Sbjct: 99 NFSLVNGKPIRI--MFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKV 156
Query: 147 V-------RNYGFVHIDSPDINK-CIKELNGMMV 172
R YGFV + D + IK++NGM++
Sbjct: 157 AVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLL 190
>gi|302808075|ref|XP_002985732.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
gi|300146641|gb|EFJ13310.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
Length = 635
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 90/184 (48%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ T+ + ++ +F ++G + V+++ +GFV+ EN ++ A++ELN
Sbjct: 218 VYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELN 277
Query: 91 GQIVNEKPLKIEAATSR-----------------KGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ +++K + A + + +++ NL D ++RE
Sbjct: 278 GKKMDDKEWYVGRAQKKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTIDDDKLRE 337
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF +GT++ C ++R+ GFV + + N+ + E+NG MV KP+ V ++ R
Sbjct: 338 LFHGFGTIISCKVMRDPQGHSKGSGFVAFSTTEEANRAMTEMNGRMVANKPIYVALAQKR 397
Query: 186 VRQR 189
+R
Sbjct: 398 DERR 401
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 21/181 (11%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P G IFI N++ + + F ++G ++ C V + Y
Sbjct: 109 RIMFSHRD-PSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQSRGY 167
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNT 126
GFV E ++ ++AIK++NG ++ EK + + R+ G V+V NL D T
Sbjct: 168 GFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTGGIAKFNNVYVKNLGDAT 227
Query: 127 RAPEVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMK 178
+++ +F +G + ++R+ +GFV+ + + D ++ELNG +D K
Sbjct: 228 TDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWY 287
Query: 179 V 179
V
Sbjct: 288 V 288
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 74/154 (48%), Gaps = 21/154 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++P + + +F + V+ V ++ Y +V+ ++ A++ L
Sbjct: 39 LYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEML 98
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N +VN KP++I S + P+ + +F+ NL + + + F +G ++ C +
Sbjct: 99 NFSLVNGKPIRI--MFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKV 156
Query: 147 V-------RNYGFVHIDSPDINK-CIKELNGMMV 172
R YGFV + D + IK++NGM++
Sbjct: 157 AVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLL 190
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
++I N++ + + +F+KYG V V K +GFV+ E+ EE ++A+ L+
Sbjct: 227 LYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNSKGFGFVNYEHHEEAQSAVDALH 286
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ K L + E A K +++ NL D+ ++R
Sbjct: 287 DTDIRGKKLFVSRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYIKNLEDDVDDEKLRA 346
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ C ++R+ +GFV SPD K + E+N M+ KP+ V ++ R
Sbjct: 347 EFEPFGTITSCKVMRDDKSTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQRR 406
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R ++ + + + +Q
Sbjct: 407 EVRRQQLESQIAQRNQIRMQ 426
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 26/162 (16%)
Query: 21 NISCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------- 68
N +CR M P G IFI N++ + + F +G V+ C V
Sbjct: 112 NRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRS 171
Query: 69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGN 121
K YGFVH E E TAIK +NG ++N+K + + SRK + T +++ N
Sbjct: 172 KGYGFVHYETGEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLDEMKAQFTNLYIKN 231
Query: 122 LSDNTRAPEVRELFVPYGTVVECDI-------VRNYGFVHID 156
L + E E+F YG V + + +GFV+ +
Sbjct: 232 LDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNSKGFGFVNYE 273
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ +F G V V ++ Y +V+ N +G A+++L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTSDGERALEQL 105
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ + +I S++ P T +F+ NL + + + F +G V+ C +
Sbjct: 106 NYSLIKNRACRI--MWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKV 163
Query: 147 V-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
+ YGFVH ++ + + IK +NGM+++ K + V SR ++ +DE+
Sbjct: 164 ATDEHGRSKGYGFVHYETGEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLDEM 220
>gi|328773103|gb|EGF83140.1| hypothetical protein BATDEDRAFT_34010 [Batrachochytrium
dendrobatidis JAM81]
Length = 718
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 25/183 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEE 81
P GT IFI N++ + + F +GK++ C + + +GFVH E E
Sbjct: 145 PALRRAGTGNIFIKNLHTTIDHKALHDTFSAFGKILSCKIAMDGERSLGHGFVHYETMEM 204
Query: 82 GRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 134
AIK +NG ++N++ + K E +++ + + T ++V N+ + E+
Sbjct: 205 AENAIKHVNGMLLNDQQVYVGLHISKKERSSTIEEKRSKFTNIYVKNIDASVDQKAFEEM 264
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F P+GT V C ++ + +GFV+ ++ D + ++E++ + GK QI R
Sbjct: 265 FHPFGTTVSCVLMVDEEGNSKEFGFVNYENHEDARRAVEEMHEKEIGGK----QIYVGRA 320
Query: 187 RQR 189
+++
Sbjct: 321 QKK 323
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/185 (21%), Positives = 81/185 (43%), Gaps = 33/185 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
I++ N++ + +F +G V C ++ K +GFV+ EN E+ R A++E++
Sbjct: 247 IYVKNIDASVDQKAFEEMFHPFGTTVSCVLMVDEEGNSKEFGFVNYENHEDARRAVEEMH 306
Query: 91 GQIVNEKPLKIEAATSR-----------------KGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ + K + + A + K +FV N+ ++ ++R+
Sbjct: 307 EKEIGGKQIYVGRAQKKFEREEELRRQYEKIREEKLSKYQGVNLFVKNIDESIDDEKLRQ 366
Query: 134 LFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTS 184
F +G + I+ + +GFV +PD K + E+N M+ KP+ V ++
Sbjct: 367 EFSVFGAITSTKIMVDEKTGISKGFGFVCFSNPDEATKAVTEMNNRMLANKPIYVALAQR 426
Query: 185 RVRQR 189
+ +R
Sbjct: 427 KEVRR 431
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 78/157 (49%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ + E+G A++EL
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 110 NYTVIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKV 167
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 168 AQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK 204
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 119 CRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGY 178
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + K E + + T ++V N+
Sbjct: 179 GFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDL 238
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGKP 176
+ + RELF +G + I R+ +GFV +I + LN + G+
Sbjct: 239 DVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQK 298
Query: 177 MKV 179
+ V
Sbjct: 299 LYV 301
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 24/134 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ + E R LFEK+G + + ++ +GFV+ E A+ LN
Sbjct: 231 IYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLN 290
Query: 91 -----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E+ L+ EAA K +++ NL+D+ ++R+
Sbjct: 291 DIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRD 350
Query: 134 LFVPYGTVVECDIV 147
+F P+GT+ ++
Sbjct: 351 MFTPFGTITSAKVI 364
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 181 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 240
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 241 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 300
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 301 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 360
Query: 187 RQR 189
++
Sbjct: 361 ERQ 363
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 34/172 (19%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 283 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 342
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------VGNLSDNTRAPEVRE 133
G+ +N K + + A + T + F V NL D +R+
Sbjct: 343 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 402
Query: 134 LFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ +S + K + E+NG +V KP+ V ++ +
Sbjct: 403 EFSPFGTITSAK----------NSEEATKAVTEMNGRIVATKPLYVALAQRK 444
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + S+K T V++ N ++ ++EL
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 91 PSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFVHFETEE 150
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I ++NG ++N K + + RK T V+V N ++ +++E
Sbjct: 151 AANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKE 210
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMKV 179
+F YGT+ ++ R +GFV + PD + + ELNG + +GK M V
Sbjct: 211 MFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKDISEGKCMYV 265
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N + + ++ +FEKYG + V+ + +GFV E+ + A+ ELN
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELN 253
Query: 91 GQIVNE-----------------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTR 127
G+ ++E + LKIE +G N ++V NL D
Sbjct: 254 GKDISEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN-----LYVKNLDDTID 308
Query: 128 APEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+R+ F P+GT+ ++ + +GFV P + K + E+NG +V KP+ V
Sbjct: 309 DERLRKEFTPFGTITSAKVMMEEGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVA 368
Query: 181 ISTSR 185
++ +
Sbjct: 369 LAQRK 373
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F +G + V+ K +GFV EE A+ E+NG
Sbjct: 298 LYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEEGRSKGFGFVCFSQPEEATKAVTEMNG 357
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVP 137
+IV KPL + A ++ ++ ++ N R ++ ++F P
Sbjct: 358 RIVGSKPLYVALAQRKEDRKAHLASQYMQRMA-NVRMQQMGQIFQP 402
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 126 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGSSKGY 185
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE + AIK +NG ++NEK + + +K + T V++ N++
Sbjct: 186 GFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYIKNIAP 245
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
+ + R LF +G V I R+ +GFV+ + + + ++ELN G+
Sbjct: 246 DVTDDQFRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTHEAASAAVEELNNKDFHGQE 305
Query: 177 MKV 179
+ V
Sbjct: 306 LYV 308
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N+ P + + R LFE +G V + ++ +GFV+ E A++ELN
Sbjct: 238 VYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTHEAASAAVEELN 297
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ + + L + EAA K +++ NL D+ ++R
Sbjct: 298 NKDFHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDEKLRT 357
Query: 134 LFVPYGTVVECDIVRN 149
+F +G + ++R+
Sbjct: 358 MFTEFGPITSAKVMRD 373
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 21/116 (18%)
Query: 88 ELNGQIVNEKP---LKIEAATSRKGPNTP---------TTKVFVGNLSDNTRAPEVRELF 135
+LN ++ KP + AAT TP + ++VG L + + ELF
Sbjct: 16 DLNNTSIDGKPSVDTSVSAATGDDAGPTPNSAAPHPQNSASLYVGELDPSVTEAMLFELF 75
Query: 136 VPYGTVVECDIVRN--------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182
G V + R+ Y +V+ +S PD K ++ELN ++ G+P ++ S
Sbjct: 76 SQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEELNYTLIKGRPCRIMWS 131
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 111 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 170
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 171 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 230
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK QI R
Sbjct: 231 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK----QIYVGRA 286
Query: 187 RQR 189
+++
Sbjct: 287 QKK 289
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 213 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 272
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 273 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 332
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 333 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 388
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 316 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 375
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 376 RIVATKPLYVALAQRKE 392
>gi|384252478|gb|EIE25954.1| hypothetical protein COCSUDRAFT_12541 [Coccomyxa subellipsoidea
C-169]
Length = 162
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV--N 95
+F GN SV I LF++YG + D+ + FV+M + +G AI+ L+G+
Sbjct: 7 VFCGNFEYDASVREIERLFDRYGSLDRVDMKTGFAFVYMRDSRDGDDAIRGLDGREFGNR 66
Query: 96 EKPLKIEAA----------TSRKGPNTPTTKVFVGNL-SDNTRAPEVRELFVPYGTVVEC 144
+ L++E A R+ P T +FV N +D TR ++ + F P+G +
Sbjct: 67 RRRLRVEWAKMDGEVRRREDLRRRQMKPATTLFVVNFDADRTRERDLEKHFEPFGRLKRV 126
Query: 145 DIVRNYGFVHIDSPD-INKCIKELNGMMVDG 174
I RNY FV ++ D +K +NG + G
Sbjct: 127 QIKRNYAFVQFENVDQAADALKSVNGTHLPG 157
>gi|324510042|gb|ADY44204.1| Nucleolysin TIAR [Ascaris suum]
Length = 367
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 30/200 (15%)
Query: 9 LVKVSRYSNNQINISCRN-MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDV 67
L + + + + N + +N MP + F +F+G++ ++ F YG++ E V
Sbjct: 106 LAAIQKAAELKANWAMQNQMPKVDTSKHFHVFVGDLATEIDNNALKAAFAAYGEISEAKV 165
Query: 68 V--------KNYGFVHMENDEEGRTAIKELNGQIV----------NEKPLKIEAATSRK- 108
+ K YGFV + E AI +NGQ++ + KP E A +++
Sbjct: 166 IRDPQTMKSKGYGFVSFPSKESAEKAIAGMNGQLIGRRQIRTNWASRKPASAEEAHTKEQ 225
Query: 109 -------GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--YGFVHIDSPD 159
T V+VGN+ +T ++RE F G + E I + Y FV + +
Sbjct: 226 TFDEVFNATRADNTSVYVGNVHSSTTEEDLREAFASIGAISEVRIFKQQGYAFVRYATKE 285
Query: 160 -INKCIKELNGMMVDGKPMK 178
+ I ++NG ++G+ +K
Sbjct: 286 AATRAIMQMNGKEINGQNIK 305
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 19/166 (11%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAI 86
G +F+ N++P + ++ +F K+G ++ C V K +GFV ++D+ A+
Sbjct: 114 TGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEENGKSKCFGFVQFDSDDSATAAL 173
Query: 87 KELNGQIVNEKPL---KIEAATSRKGPNTPT--TKVFVGNLSDNTRAPEVRELFVPYGTV 141
LN +++ K L K RK + T T V+V NL ++ +R+ F +G V
Sbjct: 174 NALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKV 233
Query: 142 VECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
I+ R +GFV+ +SPD K ++ LNG M+ K + V
Sbjct: 234 GTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFV 279
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 38 IFIGNVNPGTS-VELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
+++G+++P S VEL+ +F G +V + ++ Y +V+ + + A+
Sbjct: 31 LYVGDLDPEVSEVELV-DVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALAC 89
Query: 89 LNGQIVNEKPLKIEAATSRKGP-NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 147
LN + KP++I + P T +FV NL + + ++++F +G ++ C +
Sbjct: 90 LNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVA 149
Query: 148 ------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
+ +GFV DS D + LN M+DGK + V + ++ +E
Sbjct: 150 EENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEET 204
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 84/184 (45%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ + ++IR F ++GKV ++K+ +GFV+ E+ +E + A++ LN
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALN 268
Query: 91 GQIVNEKPLKIEAATSRKG----------------PNTPTTKVFVGNLSDNTRAPEVREL 134
G ++ K L + A + + ++V NL + +++E
Sbjct: 269 GAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEH 328
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F G + ++R+ +GFV S + K + LNG ++ G+ + + ++ +
Sbjct: 329 FSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKE 388
Query: 187 -RQR 189
RQR
Sbjct: 389 DRQR 392
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N +R +F ++GK + V+ K +GFV+ E EE + A+ ++N
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N +K L+ ++ RK +V +V NL D +R+
Sbjct: 253 GKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F PYGT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G +FI N++ + + F +G ++ C VV + +GFVH E E
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+ +NG ++N++ + + SRK T V++ N D+ +RE+
Sbjct: 151 ATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREI 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV+ + + K + ++NG ++G+ + V + R+
Sbjct: 211 FSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRL 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + +VSRY +++ N++ G E +R F YG +
Sbjct: 279 KFEQMKQERVSRYQG------------------VNLYVKNLDDGIDDERLRKEFSPYGTI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV+ KPL + A ++
Sbjct: 321 TSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 159
GP P ++VG+L + + E F P G ++ + R+ Y +++ P D
Sbjct: 5 GPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPAD 64
Query: 160 INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIG 198
+ + +N ++ G+P+++ S ++ PG+ + +G
Sbjct: 65 AERALDTMNFEVIKGRPVRIMWS----QRDPGLRKSGVG 99
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++P S LF+K+G V + + +GFV+ EN E+ A++EL+
Sbjct: 249 VYVKNIDPEISEAEFEELFKKFGNVTSLSLSVDENGKSRGFGFVNYENHEDAARAVEELH 308
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
++ L + E A K +FV NL D+ +R+
Sbjct: 309 DTEYKDRKLYVCRAQKKHEREEELRKQYEQAKLDKLNKYNGINLFVKNLDDDIDDERLRQ 368
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F YGT+ I+ + +GFV SPD K I E+N MV GKP+ V ++ +
Sbjct: 369 EFSIYGTITSAKIMVDDNGKSKGFGFVCFSSPDEATKAITEMNQRMVSGKPLYVALAQRK 428
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R ++ + + + +Q
Sbjct: 429 DVRRSQLESQINARNQLRIQ 448
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 23/165 (13%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P GT +FI N++ + + F +G ++ C V K Y
Sbjct: 147 CRIMWSQRDPSLRKTGTGNVFIKNLDASIDNKALHDTFTAFGSILSCKVAVDELGNSKGY 206
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEV 131
GFVH + E AIK + V K + + T V+V N+ E
Sbjct: 207 GFVHYKTSESAEAAIKHV---YVGHHVSKKDRQSKFDDMKLKFTNVYVKNIDPEISEAEF 263
Query: 132 RELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELN 168
ELF +G V + R +GFV+ ++ D + ++EL+
Sbjct: 264 EELFKKFGNVTSLSLSVDENGKSRGFGFVNYENHEDAARAVEELH 308
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 25/140 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEE-----GRT 84
+++G ++P + ++ LF G V V ++ Y +V+ N + G
Sbjct: 73 LYVGELDPSVTEAMLFELFNNIGAVASIRVCRDAVTRRSLGYAYVNFHNSSDVNLLTGER 132
Query: 85 AIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
A+ ELN ++ KP +I S++ P+ T T VF+ NL + + + F +G++
Sbjct: 133 ALDELNYTLIKGKPCRI--MWSQRDPSLRKTGTGNVFIKNLDASIDNKALHDTFTAFGSI 190
Query: 142 VECDIV-------RNYGFVH 154
+ C + + YGFVH
Sbjct: 191 LSCKVAVDELGNSKGYGFVH 210
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 25/109 (22%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+++Q +L K+++Y N IN+ F+ N++ E +R F YG +
Sbjct: 335 QYEQAKLDKLNKY--NGINL----------------FVKNLDDDIDDERLRQEFSIYGTI 376
Query: 63 VECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104
++ K +GFV + +E AI E+N ++V+ KPL + A
Sbjct: 377 TSAKIMVDDNGKSKGFGFVCFSSPDEATKAITEMNQRMVSGKPLYVALA 425
>gi|351705901|gb|EHB08820.1| Polyadenylate-binding protein 5 [Heterocephalus glaber]
Length = 382
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 22/177 (12%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
G IFI N++ + LF +G ++ C VV K Y +VH ++ AI
Sbjct: 104 GVGNIFIKNLDKSIDNRGLFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIW 163
Query: 88 ELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
+NG +N + + + AA R T VFV NL D+ +++ELF YG
Sbjct: 164 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNLGDDMNDEKLKELFSEYG 223
Query: 140 TVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQ 188
+ +VR+ +GFV ++ + K + EL+G +DGK + V + ++ +
Sbjct: 224 QIESVKVVRDASGKSKGFGFVKYETHEAAQKAVLELHGKSMDGKVLYVGRAQKKIER 280
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT-SRKGPNTPTTKVFVGNLSDNTRAP 129
YG+V+ + A+ +N ++N KP ++ + + + +F+ NL +
Sbjct: 61 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR 120
Query: 130 EVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
+ LF +G ++ C +V + Y +VH DS N+ I +NG+ ++ + + V
Sbjct: 121 GLFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>gi|344231201|gb|EGV63083.1| hypothetical protein CANTEDRAFT_106956 [Candida tenuis ATCC 10573]
Length = 231
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 35/181 (19%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+F+G ++ + ++ FE G V+ V+ + YG+V E+ + A+++
Sbjct: 5 LFVGRLSWNIDDDWLKREFEPSGGVISARVIMERATGKSRGYGYVDFESKADAEKALQDF 64
Query: 90 NGQIVNEKPLKIEAATSRKGPNTP----------------TTKVFVGNLSDNTRAPEVRE 133
G+ ++ +P+ ++ +TS+ P TP + +F+GNLS N ++ E
Sbjct: 65 QGKEIDGRPINLDLSTSK--PQTPAKNDRAKKFGDVVSAPSDTLFIGNLSFNATRDKLFE 122
Query: 134 LFVPYGTVVECDI--------VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTS 184
F YG V+ C I + +G+V S + ++ LNG ++G+P ++ ST
Sbjct: 123 AFGQYGEVISCRIPTHPDTQQPKGFGYVQYGSIEEAKAALEALNGEYIEGRPCRLDYSTP 182
Query: 185 R 185
R
Sbjct: 183 R 183
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 18/180 (10%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVV----ECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
F P +V E + +GFV + D K + E+NG ++GK + V + +V ++
Sbjct: 211 FGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 270
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 34/176 (19%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 249
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 250 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 309
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 310 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 365
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 293 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 352
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 353 RIVATKPLYVALAQRKE 369
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 21/189 (11%)
Query: 22 ISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVH 75
+ C+ P G +++ N++ ++ LF K+G ++ C VV K YGFV
Sbjct: 93 MWCQRNPCARKSGIGNLYVKNLDASIDSAGLQSLFSKFGTILSCKVVEEHGKSKGYGFVQ 152
Query: 76 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRA 128
++++ A L+ ++ EK L + + T T T ++V NLS +
Sbjct: 153 FDSEDSALAARTALHDTMLKEKKLYVSRFVKKSERTTATSYDELKFTNLYVKNLSKDMTQ 212
Query: 129 PEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+F +G ++ I+ R +GFV +SP D K + LNG ++ + + V
Sbjct: 213 DAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDALNGYQLESRTLFVG 272
Query: 181 ISTSRVRQR 189
+ ++ ++
Sbjct: 273 RAQAKAERK 281
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 133 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDESGNSKGY 192
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T ++V N+
Sbjct: 193 GFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPA 252
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVH-IDSPDINKCIKELNGMMVDGKP 176
+ + RELF +G V + R+ +GFV+ I+ + + ELNG G+
Sbjct: 253 DATDDQFRELFEKFGDVTSASLARDEAGKNRGFGFVNFINHEHASAAVDELNGKDFMGQD 312
Query: 177 MKV 179
+ V
Sbjct: 313 LYV 315
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N+ + + R LFEK+G V + ++ +GFV+ N E A+ ELN
Sbjct: 245 IYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGFGFVNFINHEHASAAVDELN 304
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K ++V NL D+ ++RE
Sbjct: 305 GKDFMGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLEDDVDDEKLRE 364
Query: 134 LFVPYGTVVECDIVRN 149
LF PYG + ++R+
Sbjct: 365 LFAPYGAITSAKVMRD 380
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
I++ N++P S+E LFE++G V + K +GFV+ E EE + A+ L+
Sbjct: 232 IYVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAVDGLH 291
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
N + L + E A K +++ NL D +R
Sbjct: 292 DTEYNGRKLFVSRAQKKAEREEELRKSYEHAKMEKMSKYQGVNLYIKNLDDEIDDERLRA 351
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++R+ +GFV SPD K + E+N M+ KP+ V ++ R
Sbjct: 352 EFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGAKPLYVSLAQRR 411
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R ++ + + + +Q
Sbjct: 412 EVRRQQLESQIAQRNQIRMQ 431
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 26/160 (16%)
Query: 23 SCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KN 70
+CR M P G IFI N++ + + F +G V+ C V K
Sbjct: 119 ACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDEQGRSKG 178
Query: 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLS 123
YGFVH E E TAIK +NG ++N+K + + S+K + T ++V NL
Sbjct: 179 YGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISKKERQSKLDEIRAQFTNIYVKNLD 238
Query: 124 DNTRAPEVRELFVPYGTVVECDI-------VRNYGFVHID 156
E +LF +G V I + +GFV+ +
Sbjct: 239 PEVSLEEFTQLFEQFGNVTSAVIQTDEEGNSKGFGFVNFE 278
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P S ++ +F G V V ++ Y +V+ N +G A+++L
Sbjct: 51 LYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 110
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ + +I S++ P T +F+ NL + + + F +G V+ C +
Sbjct: 111 NYSLIKGRACRI--MWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKV 168
Query: 147 V-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
+ YGFVH ++ + + IK +NGM+++ K + V S+ ++ +DE+
Sbjct: 169 ATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISKKERQSKLDEI 225
>gi|403418011|emb|CCM04711.1| predicted protein [Fibroporia radiculosa]
Length = 328
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG----- 91
++++G + P E + F+ YG++V+C V+ +GFV E+ + A+++ NG
Sbjct: 4 RLYLGRLPPDARSEDVSKFFDGYGRIVDCRVMTGFGFVEFESSRDADDAVRDFNGKAFMG 63
Query: 92 -----QIVNEKPLKIEAATSRKGPNT---PTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
+ E + E + P P ++ V +S +T ++++ G+V
Sbjct: 64 ANIVVEFAKESRPRREVFEPERAPRARRPPGFRLVVSGISRDTSWQDLKDFGREAGSVSY 123
Query: 144 CDIVRNYG----FVHIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
DI R+ ++ D + +KEL+G + G+P++V + R
Sbjct: 124 ADIDRDAAGEGILEYLSRDDAERAVKELDGKDLRGQPVRVALDLER 169
>gi|242046410|ref|XP_002461076.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
gi|241924453|gb|EER97597.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
Length = 268
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 85/190 (44%), Gaps = 36/190 (18%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
K+F+GN+ + LFE+ G V +VV + +GFV M + EE A++
Sbjct: 78 LKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVE 137
Query: 88 ELNGQIVNEKPLKIEAA----TSRKGPNTP---------------TTKVFVGNLSDNTRA 128
+ NG +PL++ P P KV+VGNL+
Sbjct: 138 QFNGYTFQGRPLRVNCGPPPPRDESAPRAPRGGGGGGGGGSFVDSANKVYVGNLAWGVDN 197
Query: 129 PEVRELFVPYGTVVECDIV--------RNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV 179
+ LF G V++ ++ R +GFV + + ++N I L+G+ +DG+ ++V
Sbjct: 198 STLENLFSEQGQVLDAKVIYDRESGRSRGFGFVTYGTAAEVNNAISNLDGIDLDGRQIRV 257
Query: 180 QISTSRVRQR 189
++ S+ R++
Sbjct: 258 TVAESKPRRQ 267
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 78/157 (49%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ + E+G A++EL
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 110 NYTVIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKV 167
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 168 AQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK 204
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 119 CRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGY 178
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + K E + + T ++V N+
Sbjct: 179 GFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDL 238
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGKP 176
+ + R+LF +G + I R+ +GFV +I + + LN G+
Sbjct: 239 DVSDEDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQK 298
Query: 177 MKV 179
+ V
Sbjct: 299 LYV 301
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ S E R LFEK+G + + ++ +GFV+ E A+ LN
Sbjct: 231 IYVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALN 290
Query: 91 -----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E+ L+ EAA K +++ NL+D+ ++R+
Sbjct: 291 DTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRD 350
Query: 134 LFVPYGTVVECDIVRN 149
+F P+GT+ ++R+
Sbjct: 351 MFTPFGTITSAKVMRD 366
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 18/180 (10%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVV----ECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
F P +V E + +GFV + D K + E+NG ++GK + V + +V ++
Sbjct: 211 FGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 270
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 34/176 (19%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 249
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 250 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 309
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 310 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 365
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 293 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 352
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 353 RIVATKPLYVALAQRKE 369
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 18/180 (10%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVV----ECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
F P +V E + +GFV + D K + E+NG ++GK + V + +V ++
Sbjct: 211 FGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 270
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 34/176 (19%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 249
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 250 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 309
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 310 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 365
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 293 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 352
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 353 RIVATKPLYVALAQRKE 369
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 105 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGY 164
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T V+V N+++
Sbjct: 165 GFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAN 224
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E R+LF +G V + R+ +GFV+ + + K +++LN G+
Sbjct: 225 EVTDDEFRDLFAAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVEDLNNKDFRGQD 284
Query: 177 MKV 179
+ V
Sbjct: 285 LYV 287
Score = 37.4 bits (85), Expect = 3.3, Method: Composition-based stats.
Identities = 40/224 (17%), Positives = 76/224 (33%), Gaps = 76/224 (33%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ + + R LF +G V + ++ +GFV+ E A+++LN
Sbjct: 217 VYVKNIANEVTDDEFRDLFAAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVEDLN 276
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ + L + EAA K +++ NL D ++R
Sbjct: 277 NKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDEVDDEKLRT 336
Query: 134 LFVPYGTVVECDIVRN-------------------------------------------- 149
LF +G + ++R+
Sbjct: 337 LFADFGPITSAKVMRDTPTDSKEDEEGSSEEKEKENKPEAEEKTEEKEGSEKKEKKSDKK 396
Query: 150 -------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+GFV +P D K + E+N MV GKP+ V ++ +
Sbjct: 397 LHGKSKGFGFVCFSNPDDATKAVAEMNQRMVHGKPLYVALAQRK 440
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++EL
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
F YG + ++ + +GFV + D K + ++NG ++G+ + V
Sbjct: 211 FSKYGPALSIRVMTDDGGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYV 263
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAI---- 86
++I N E ++ LF KYG + V+ K +GFV E E+ + A+
Sbjct: 193 VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHEDAQKAVDDMN 252
Query: 87 -KELNGQIV------------NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
KELNG+ V NE K E + ++V NL D +R+
Sbjct: 253 GKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 43.5 bits (101), Expect = 0.049, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 33/185 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N+ + E +R +FE +G V + K+ +GFV E E+ A++EL+
Sbjct: 222 VFVKNLGDEVTDEELRKVFEGFGPVTSVMISKDEDGKSKGFGFVCYETPEDASKAVEELD 281
Query: 91 GQIVNEKP------------------LKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G+ E K EA + +++ NL D +R
Sbjct: 282 GKHGEEDKKWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEDGADDETLR 341
Query: 133 ELFVPYGTVVECDIVRNY-------GFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTS 184
ELF +GT+ C ++R+ FV SP + + + ELNG MV KP+ V ++
Sbjct: 342 ELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPEEATRAVTELNGKMVGAKPLYVALAQR 401
Query: 185 RVRQR 189
+ +R
Sbjct: 402 KEDRR 406
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ +R F ++G +V V K YGF+ + +
Sbjct: 123 PTIRKSGVGNIFIKNLDKDIDTVALRDTFAQFGNIVSAKVATDGQGNSKGYGFIQFDTEA 182
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK---VFVGNLSDNTRAPEVRELFVP 137
+ AI+++NG +N+K + + R T TK VFV NL D E+R++F
Sbjct: 183 AAKEAIEKVNGMELNDKVVYVGPFQRRAERGTTETKFNNVFVKNLGDEVTDEELRKVFEG 242
Query: 138 YGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 169
+G V I ++ +GFV ++P D +K ++EL+G
Sbjct: 243 FGPVTSVMISKDEDGKSKGFGFVCYETPEDASKAVEELDG 282
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G++ + + LF G VV V ++ Y +V+ ++ AI L
Sbjct: 45 LYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAARAIDVL 104
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTTKV---FVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N Q+VN KP++I S++ P + V F+ NL + +R+ F +G +V +
Sbjct: 105 NFQVVNGKPIRI--LYSQRDPTIRKSGVGNIFIKNLDKDIDTVALRDTFAQFGNIVSAKV 162
Query: 147 V-------RNYGFVHIDSPDINK-CIKELNGMMVDGK 175
+ YGF+ D+ K I+++NGM ++ K
Sbjct: 163 ATDGQGNSKGYGFIQFDTEAAAKEAIEKVNGMELNDK 199
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHID-SPDIN 161
N T ++VG+L + ++ ELF G VV + R+ Y +V+ + D
Sbjct: 39 NASNTSLYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAA 98
Query: 162 KCIKELNGMMVDGKPMKVQIS 182
+ I LN +V+GKP+++ S
Sbjct: 99 RAIDVLNFQVVNGKPIRILYS 119
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 134 PSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFVHFETEE 193
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I ++NG ++N K + + RK T V+V N ++ ++++
Sbjct: 194 AANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTEDKLKD 253
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGM-MVDGKPMKV 179
+F YGT+ ++ R +GFV + PD + + ELNG + +GK M V
Sbjct: 254 MFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEIAEGKCMYV 308
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N + + ++ +FEKYG + V+ + +GFV E+ + A+ ELN
Sbjct: 237 VYVKNFGEDMTEDKLKDMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELN 296
Query: 91 GQIVNE-----------------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTR 127
G+ + E + LKIE +G N ++V NL D
Sbjct: 297 GKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN-----LYVKNLDDTID 351
Query: 128 APEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+R+ F P+GT+ ++ + +GFV P + K + E+NG +V KP+ V
Sbjct: 352 DERLRKEFTPFGTITSAKVMMEEGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVA 411
Query: 181 ISTSR 185
++ +
Sbjct: 412 LAQRK 416
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F +G + V+ K +GFV EE A+ E+NG
Sbjct: 341 LYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEEGRSKGFGFVCFSQPEEATKAVTEMNG 400
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVP 137
+IV KPL + A ++ ++ ++ N R ++ ++F P
Sbjct: 401 RIVGSKPLYVALAQRKEDRKAHLASQYMQRMA-NVRMQQMGQIFQP 445
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 125 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 184
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + + ++K + T V+V NL
Sbjct: 185 GFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEP 244
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGK 175
E RELF YG + + R+ +GFV+ ++ +++LN G+
Sbjct: 245 EVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQ 304
Query: 176 PMKV 179
+ V
Sbjct: 305 KLYV 308
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ N +G A+++L
Sbjct: 56 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 116 NYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 173
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + IK +NGM+++ K
Sbjct: 174 AQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEK 210
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 25/137 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++ N+ P + E R LFEKYG++ + ++ +GFV+ N + A+++L
Sbjct: 237 VYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDL 296
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N + + L + EAA K ++V NL+D+ ++R
Sbjct: 297 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLR 356
Query: 133 ELFVPYGTVVECDIVRN 149
+LF+ +G + ++R+
Sbjct: 357 DLFIGFGNITSARVMRD 373
>gi|302822192|ref|XP_002992755.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
gi|300139400|gb|EFJ06141.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
Length = 177
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 87/174 (50%), Gaps = 26/174 (14%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---------KNYGFVHMENDEEGRTAIK 87
+I++GN++ E + + ++ G + + V + +G+V + + + + A++
Sbjct: 2 RIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQ 61
Query: 88 ELNGQIVNEKPLKIEAA-----TSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
+L+G IV + LK + ++GP TKVF+GNL + E F +G
Sbjct: 62 KLDGHIVQGRALKASFSQPYKKAGKEGPVEVAASHTKVFIGNLPWGVDDGSLEEFFRAHG 121
Query: 140 TVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTS 184
VVE IV R +GFV + SP + ++ +K L+G DG+ ++V+++ +
Sbjct: 122 KVVEAKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDGADCDGRRLRVKLADT 175
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 125 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 184
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + + ++K + T V+V NL
Sbjct: 185 GFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEP 244
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGK 175
E RELF YG + + R+ +GFV+ ++ +++LN G+
Sbjct: 245 EVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQ 304
Query: 176 PMKV 179
+ V
Sbjct: 305 KLYV 308
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ N +G A+++L
Sbjct: 56 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 116 NYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 173
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + IK +NGM+++ K
Sbjct: 174 AQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEK 210
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 25/137 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++ N+ P + E R LFEKYG++ + ++ +GFV+ N + A+++L
Sbjct: 237 VYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDL 296
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N + + L + EAA K ++V NL+D+ ++R
Sbjct: 297 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLR 356
Query: 133 ELFVPYGTVVECDIVRN 149
+LF+ +G + ++R+
Sbjct: 357 DLFIGFGNITSARVMRD 373
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ R A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D+ +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + +++ +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKI---------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
AI+++NG ++N++ + + EA K P V++ N ++ ++
Sbjct: 151 AERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKAKEFPN--VYIKNFGEDMDDERLK 208
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTS 184
+LF +G + ++ + +GFV + D K + E+NG ++GK + V +
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQK 268
Query: 185 RVRQR 189
+V ++
Sbjct: 269 KVERQ 273
Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 78/157 (49%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ + E+G A++EL
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 110 NYTVIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKV 167
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 168 AQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK 204
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 119 CRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGY 178
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + K E + + T ++V N+
Sbjct: 179 GFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDL 238
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGKP 176
+ E RELF +G + I R+ +GFV +I + + LN G+
Sbjct: 239 DVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQK 298
Query: 177 MKV 179
+ V
Sbjct: 299 LYV 301
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ S E R LFEK+G + + ++ +GFV+ E A+ LN
Sbjct: 231 IYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALN 290
Query: 91 -----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E+ L+ EAA K +++ NL+D+ ++R+
Sbjct: 291 DTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRD 350
Query: 134 LFVPYGTVVECDIVRN 149
+F P+GT+ ++R+
Sbjct: 351 MFTPFGTITSAKVMRD 366
>gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
gi|9759027|dbj|BAB09396.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|14532488|gb|AAK63972.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|18655365|gb|AAL76138.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|332008535|gb|AED95918.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
Length = 289
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 24/176 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+F+GN+ + + LFE+ G V +V+ N +GFV M EE A+++
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N VN + L + A R + P +++VGNL + + + LF +G V
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKV 233
Query: 142 VECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
V+ +V R +GFV + + ++N I L+G ++G+ +KV ++ R R+
Sbjct: 234 VDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTA 85
F+I++GN+ + LF ++GKVV+ VV + +GFV M N+ E A
Sbjct: 205 AAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVA 264
Query: 86 IKELNGQIVNEKPLKIEAATSR 107
I L+GQ + + +K+ A R
Sbjct: 265 IAALDGQNLEGRAIKVNVAEER 286
>gi|74199920|dbj|BAE20776.1| unnamed protein product [Mus musculus]
Length = 266
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N+N + + F +G ++ C VV K +GFVH E +E
Sbjct: 91 PSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENGSKGHGFVHFETEEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + S+K G T T V++ N D + L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
F +G ++ ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 211 FGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E + LF ++G+++ V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAA 104
G+ +N K + + A
Sbjct: 253 GKELNGKHIYVGRA 266
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 78/157 (49%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ + E+G A++EL
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 110 NYTVIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKV 167
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 168 AQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK 204
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 119 CRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGY 178
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + K E + + T ++V N+
Sbjct: 179 GFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDL 238
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGKP 176
+ + R+LF +G + I R+ +GFV +I + + LN G+
Sbjct: 239 DVSDDDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQK 298
Query: 177 MKV 179
+ V
Sbjct: 299 LYV 301
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ S + R LFEK+G + + ++ +GFV+ E A+ LN
Sbjct: 231 IYVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALN 290
Query: 91 -----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E+ L+ EAA K +++ NL+D+ ++R+
Sbjct: 291 DTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRD 350
Query: 134 LFVPYGTVVECDIVRN 149
+F P+GT+ ++R+
Sbjct: 351 MFTPFGTITSAKVMRD 366
>gi|297743841|emb|CBI36724.3| unnamed protein product [Vitis vinifera]
Length = 510
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 14/180 (7%)
Query: 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---KNYGFVHMENDEEGRTAIK 87
S V F +++GNV + + +F ++G ++C + +++ FV+ E+ R A +
Sbjct: 12 SEVHPFSLWVGNVGNSVTESDLLAVFSRFG-ALDCFISYSSRSFAFVYFRRGEDARAARE 70
Query: 88 ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 147
L G +V P+KIE A P P ++VG S +T E+ F+ +G + +
Sbjct: 71 ALQGMVVLGTPMKIEFAR----PAKPCKSLWVGGFSPSTTKGELENEFLKFGKIEDFKFF 126
Query: 148 --RNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV---QISTSRVRQRPGVDEVVIGQKS 201
RN V ++ D ++ +K LNG + G ++V ++ TSR Q P + GQ S
Sbjct: 127 WDRNSALVEYVKLEDASQALKGLNGKQIGGAMIRVDFLRLQTSRREQGPEFLDTRDGQFS 186
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 119 CRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 178
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T V++ NL
Sbjct: 179 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQ 238
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E R++F +G + + R+ +GFV+ + D + E+N V G+
Sbjct: 239 EISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQK 298
Query: 177 MKV 179
+ V
Sbjct: 299 LYV 301
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ N +G A+++L
Sbjct: 50 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 109
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 110 NYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKV 167
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 168 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK 204
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 24/145 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N++ S E R +FEK+G++ + ++ +GFV+ + + A+ E+N
Sbjct: 231 VYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMN 290
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ V + L + EAA K ++V NL+D+ ++RE
Sbjct: 291 DKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRE 350
Query: 134 LFVPYGTVVECDIVRNYGFVHIDSP 158
+F PYGT+ ++R+ +P
Sbjct: 351 MFAPYGTITSAKVMRDTNIERTQTP 375
>gi|388518645|gb|AFK47384.1| unknown [Lotus japonicus]
Length = 307
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 31/181 (17%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK 87
KIF+GN+ E + LFE+ G V +V+ N +GFV M E+ A+
Sbjct: 120 LKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALN 179
Query: 88 ELNGQIVNEKPLKIEAATSRKG-PNTP-------------TTKVFVGNLSDNTRAPEVRE 133
+ +G ++ + L + AT ++ P P V+VGNL + A + E
Sbjct: 180 KFSGYELDGRVLTVNKATPKEARPERPPRTFGSGSGSRDSGLSVYVGNLPWSVDAARLEE 239
Query: 134 LFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTS 184
+F +G V IV R +GFV + S DIN I L+G +DG+ ++V ++
Sbjct: 240 IFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEG 299
Query: 185 R 185
R
Sbjct: 300 R 300
>gi|17537143|ref|NP_496718.1| Protein TIAR-2 [Caenorhabditis elegans]
gi|6425313|emb|CAB60356.1| Protein TIAR-2 [Caenorhabditis elegans]
Length = 434
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 22/170 (12%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+F+ N++P + E + LF + G V++ ++ Y FV + + A++ NG+
Sbjct: 42 LFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDPYAFVEFSDHNQATLALQSHNGR 101
Query: 93 IVNEKPLKIEAATSRKGPNTPTTK--------VFVGNLSDNTRAPEVRELFVPYGTVVEC 144
+ EK + + A + P +K VFVG+L + ++RE FV +G V E
Sbjct: 102 ELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEA 161
Query: 145 DIVRN--------YGFV-HIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
I+R+ YGFV + D + I E+NG + + ++ +T +
Sbjct: 162 KIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRK 211
Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 49/203 (24%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
F +F+G++ +R F K+G+V E ++ K YGFV E+ AI
Sbjct: 132 FHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAID 191
Query: 88 ELNGQIVNEKPLKIEAATSR-------------------------------------KGP 110
E+NG + + ++ AT +
Sbjct: 192 EMNGAWLGRRTIRTNWATRKPDEDGERGGDRGDRRGGGGGGRDRYHNQSEKTYDEIFNQA 251
Query: 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI--VRNYGFVHIDSPD-INKCIKEL 167
T V+VGN++ N E+R F +G + E ++ Y FV ++ + + I ++
Sbjct: 252 AADNTSVYVGNIA-NLGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARAIVQM 310
Query: 168 NGMMVDGKPMKVQISTSRVRQRP 190
N + G+ ++ S +P
Sbjct: 311 NNADIGGQIVRCSWGKSGDSGKP 333
>gi|302758260|ref|XP_002962553.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
gi|300169414|gb|EFJ36016.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
Length = 177
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 87/174 (50%), Gaps = 26/174 (14%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---------KNYGFVHMENDEEGRTAIK 87
+I++GN++ E + + ++ G + + V + +G+V + + + + A++
Sbjct: 2 RIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQ 61
Query: 88 ELNGQIVNEKPLKIEAA-----TSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
+L+G IV + LK + ++GP TKVF+GNL + E F +G
Sbjct: 62 KLDGHIVQGRALKASYSQPYKKAGKEGPVEVAASHTKVFIGNLPWGVDDGSLEEFFRAHG 121
Query: 140 TVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTS 184
VVE IV R +GFV + SP + ++ +K L+G DG+ ++V+++ +
Sbjct: 122 KVVEVKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDGADCDGRRLRVKLADT 175
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 78/157 (49%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ + E+G A++EL
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 110 NYTVIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKV 167
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 168 AQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK 204
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 119 CRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGY 178
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + K E + + T ++V N+
Sbjct: 179 GFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDL 238
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGKP 176
+ E RELF +G + I R+ +GFV +I + + LN G+
Sbjct: 239 DVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQK 298
Query: 177 MKV 179
+ V
Sbjct: 299 LYV 301
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ S E R LFEK+G + + ++ +GFV+ E A+ LN
Sbjct: 231 IYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALN 290
Query: 91 -----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E+ L+ EAA K +++ NL+D+ ++R+
Sbjct: 291 DTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRD 350
Query: 134 LFVPYGTVVECDIVRN 149
+F P+GT+ ++R+
Sbjct: 351 MFTPFGTITSAKVMRD 366
>gi|363807234|ref|NP_001242356.1| 31 kDa ribonucleoprotein, chloroplastic-like [Glycine max]
gi|255645622|gb|ACU23305.1| unknown [Glycine max]
Length = 300
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
KIF+GN+ E + LFE+ G V +V+ N +GFV M EE A+K
Sbjct: 123 KIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKM 182
Query: 89 LNGQIVNEKPLKIEAATSRKG------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVV 142
+G +N + L + A + + +V+VGNL + + ++F +G V
Sbjct: 183 FSGYELNGRVLTVNKAAPKGAQPERPPRPPQSFRVYVGNLPWDVDNSRLEQIFSEHGKVE 242
Query: 143 ECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
+ +V R +GFV + S D+N I L+G +DG+ ++V ++ R
Sbjct: 243 DARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRVNVAAQR 294
Score = 43.1 bits (100), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
+F++++GN+ + +F ++GKV + VV + +GFV M ++ + AI
Sbjct: 214 SFRVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAI 273
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNT 112
L+GQ ++ + +++ A R P++
Sbjct: 274 AALDGQSLDGRAIRVNVAAQRPKPSS 299
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 91 PSLRRSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCRVAQDESGSSKGYGFVHFETEE 150
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I +NG ++N K + + SRK T V+V N ++ +++E
Sbjct: 151 AANKSIDRVNGMLLNGKKVYVGKFISRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKE 210
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGM-MVDGKPMKV 179
+F YGT+ ++ R +GFV + P+ ++ + +LNG + +GK M V
Sbjct: 211 MFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPNAADRAVADLNGKEIAEGKIMYV 265
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/177 (22%), Positives = 84/177 (47%), Gaps = 21/177 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEND 79
PG + +++G+++ + ++ F G V+ V ++ Y +V+ +
Sbjct: 3 PGAPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQP 62
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFV 136
+ A+ +N I+ +P++I S++ P+ + VF+ NL N + + F
Sbjct: 63 ADAERALDTMNFDIIKGRPIRI--MWSQRDPSLRRSGVGNVFIKNLDKNIDNKAMYDTFS 120
Query: 137 PYGTVVECDIVRN-------YGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSR 185
+G ++ C + ++ YGFVH ++ + NK I +NGM+++GK + V SR
Sbjct: 121 AFGNILSCRVAQDESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFISR 177
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N + + ++ +FEKYG + V+ + +GFV E+ A+ +LN
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPNAADRAVADLN 253
Query: 91 GQIVNE-----------------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTR 127
G+ + E + LKIE +G N ++V NL D
Sbjct: 254 GKEIAEGKIMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN-----LYVKNLDDTID 308
Query: 128 APEVRELFVPYGTVVECDIV------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQ 180
+R+ F P+GT+ ++ + +GFV + + K + E+NG +V KP+ V
Sbjct: 309 DERLRKEFAPFGTITSVKVMMEDGRSKGFGFVCFSLAEEATKAVTEMNGRIVGSKPLYVA 368
Query: 181 ISTSR 185
++ +
Sbjct: 369 LAQRK 373
Score = 39.7 bits (91), Expect = 0.69, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F +G + V+ K +GFV EE A+ E+NG
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGTITSVKVMMEDGRSKGFGFVCFSLAEEATKAVTEMNG 357
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 358 RIVGSKPLYVALAQRKE 374
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 25/178 (14%)
Query: 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEE 81
V +++GN+ + LF +G++V VV + YGFV +
Sbjct: 203 LKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRC 262
Query: 82 GRTAIKELNGQIVNEKPLKIEAA--------TSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
AIK +NG++V + L++ A + + T K++V NLS + +
Sbjct: 263 ASEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIH 322
Query: 134 LFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
LF+P+G V + ++ YGFV SP + + LNG +VDG+ ++V++S
Sbjct: 323 LFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVS 380
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+++ N++ + + + LF +G+V V K+ YGFV + A+
Sbjct: 305 KLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIH 364
Query: 89 LNGQIVNEKPLKIEAA--------TSRKGPNTPTT-------KVFVGNLSDNTRAPEVRE 133
LNG++V+ + +++ + ++ + P+T T ++V N+ + ++ E
Sbjct: 365 LNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVE 424
Query: 134 LFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQIS 182
LF+P+G + +V + YGF+ DS K I +NG +V G+ + V+++
Sbjct: 425 LFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVA 482
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+++ N+ + + LF +GK+ VV K YGF+ + E AI +
Sbjct: 408 LYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAM 467
Query: 90 NGQIVNEKPLKIEAA---------TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
NG +V + + + A + + +++++ NL + A ++ LF P+G
Sbjct: 468 NGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQ 527
Query: 141 VVECDIVRNYGFV-HIDSPDINKCIKELNGMMVDGKPMKVQIS 182
+ + + Y V + D+P K ++ ++G MV+GK + V+ S
Sbjct: 528 ITKVLMNLEYSLVWYADAPSAIKAVQHMDGYMVEGKRLVVKRS 570
Score = 42.7 bits (99), Expect = 0.095, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
+++I N+ + + + LF +G++ + + Y V + A++ ++G +V
Sbjct: 503 RLYITNLPRSMTADKMVNLFAPFGQITKVLMNLEYSLVWYADAPSAIKAVQHMDGYMVEG 562
Query: 97 KPLKIE-----AATSRKGPNTPTTKV-----FVGNLSDNTRAPEVRELFVPYGTVVECDI 146
K L ++ + + P ++ +VG + + + +LF P+G VV+ +
Sbjct: 563 KRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARM 622
Query: 147 VR--NYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQIS 182
R YG V D+P I L+G + G + V+++
Sbjct: 623 FRFQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVA 661
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--NYGFVHMENDEEGRTAIKELNGQIVN 95
+++G V + + LF +G+VV+ + + YG V +N AI L+G +
Sbjct: 593 LYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVRFDNPSCAAAAIDHLDGYQIG 652
Query: 96 EKPLKIEAA-------------TSRKGPNTP----TTKVFVGNLSDNTRAPEVRELFVPY 138
L + A TS+ N T ++V +L + +LF+P
Sbjct: 653 GSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPC 712
Query: 139 GTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQIS 182
G + + +V + +GFV D+ + +NG +DG ++V+I+
Sbjct: 713 GQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIA 765
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 132 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGY 191
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T ++V N+
Sbjct: 192 GFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIQL 251
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDS-PDINKCIKELNGMMVDGK 175
+ + R LF +G V + R+ +GFV+ S D +K ++ELN G+
Sbjct: 252 DVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVEELNEKEFHGQ 311
Query: 176 PMKV 179
+ V
Sbjct: 312 NLYV 315
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 44/224 (19%), Positives = 82/224 (36%), Gaps = 76/224 (33%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
I++ N+ + + R LFEK+G V + ++ +GFV+ + E+ A++EL
Sbjct: 244 IYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVEEL 303
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N + + + L + EAA K +++ NL D ++R
Sbjct: 304 NEKEFHGQNLYVGRAQKKHEREEELRRSYEAARQEKASKYQGVNLYIKNLDDEVDDDKLR 363
Query: 133 ELFVPYGTVVECDIVRN------------------------------------------- 149
+LF +G + ++R
Sbjct: 364 QLFSEFGPITSAKVMRETLAEGADEPEAKDAADAKENVKEDEEAAKTEGDEGDAKADKKP 423
Query: 150 -------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+GFV +P D K + E+N MV+GKP+ V ++ +
Sbjct: 424 KLGKSKGFGFVCFGNPDDATKAVAEMNQRMVNGKPLYVALAQRK 467
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 22/163 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + I F +G ++ C V K YGFVH E +E
Sbjct: 99 PSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEE 158
Query: 81 EGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPT--TKVFVGNLSDNTRAPEVRE 133
+ AI+++NG ++ K + + AA R+ T T VF+ N +D ++ +
Sbjct: 159 SAQKAIEKVNGMLLEGKKVYVGKFQPRAARMREMGETARRFTNVFIKNFADELDKEKLEK 218
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELN 168
LF +G + C ++ + +GFV ++P D K + E++
Sbjct: 219 LFAKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEKAVNEMH 261
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 44/187 (23%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+FI N E + LF K+GK+ C V+ K +GFV EN E+ A+ E++
Sbjct: 202 VFIKNFADELDKEKLEKLFAKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEKAVNEMH 261
Query: 91 ---------------GQIVNEKPL---------KIEAATSRKGPNTPTTKVFVGNLSDNT 126
Q NE+ K+E +G N ++V NL D
Sbjct: 262 EYQLPDSERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVN-----LYVKNLDDTV 316
Query: 127 RAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMK 178
+R+ F YG + ++ + +GFV + PD K + E+NG M+ KP+
Sbjct: 317 DDEVLRQNFESYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLY 376
Query: 179 VQISTSR 185
V ++ +
Sbjct: 377 VALAQRK 383
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 25/113 (22%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
R++QQ++ ++ RY +++ N++ E++R FE YGK+
Sbjct: 290 RYEQQKVERMQRYQG------------------VNLYVKNLDDTVDDEVLRQNFESYGKI 331
Query: 63 VECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV E +E A+ E+NG+++ KPL + A ++
Sbjct: 332 TSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKE 384
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 91 PSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEE 150
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I +NG ++N K + + RK T V+V N ++ ++++
Sbjct: 151 AANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKD 210
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMKV 179
+F YGT+ ++ R +GFV + PD + + ELNG V +GK M V
Sbjct: 211 MFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N + + ++ +FEKYG + V+ + +GFV E+ + A+ ELN
Sbjct: 194 VYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 253
Query: 91 GQIVNE-----------------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTR 127
G+ V E + LK+E +G N ++V NL D+
Sbjct: 254 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-----LYVKNLDDSID 308
Query: 128 APEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+R+ F P+GT+ ++ + +GFV +P + K + E+NG ++ KP+ V
Sbjct: 309 DERLRKEFAPFGTITSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVA 368
Query: 181 ISTSR 185
++ +
Sbjct: 369 LAQRK 373
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 25/144 (17%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q +L +++RY +++ N++ E +R F +G +
Sbjct: 281 KFEQLKLERLNRYQG------------------VNLYVKNLDDSIDDERLRKEFAPFGTI 322
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK 116
V+ K +GFV EE A+ E+NG+I+ KPL + A ++
Sbjct: 323 TSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLAS 382
Query: 117 VFVGNLSDNTRAPEVRELFVPYGT 140
++ L+ N R ++ ++F P G
Sbjct: 383 QYMQRLA-NMRMQQMGQIFQPGGA 405
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 97/210 (46%), Gaps = 32/210 (15%)
Query: 29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEE 81
G ++ I++ N++ + ++ LF ++GK++ V+++ +GFV+ E EE
Sbjct: 184 GAQALAFTNIYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKHEE 243
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSR-----------------KGPNTPTTKVFVGNLSD 124
+ A+ +NG+ V+ + L + A R + ++V NL D
Sbjct: 244 AQKAVDHMNGKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQTRYQGVNLYVKNLDD 303
Query: 125 NTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPM 177
+ ++R +F PYG + ++ + +GFV SP + K + E+NG +V KP+
Sbjct: 304 SISDEKLRTVFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPL 363
Query: 178 KVQISTSRVRQRPGVDEVVIGQKSVPVQAL 207
V ++ R +R + Q+ VQAL
Sbjct: 364 YVALA-QRKEERKAILTNQYMQRLSTVQAL 392
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 82/183 (44%), Gaps = 25/183 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G +FI N+ + + F +G ++ C V + +GFVH E +E
Sbjct: 91 PGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETNEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
+ AI +NG ++N++ + + S + T ++V NL + +++L
Sbjct: 151 AQQAISTMNGMLLNDRKVFVGHFKSHREREAELGAQALAFTNIYVKNLHVDMDEQGLQDL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G ++ ++R+ +GFV+ + + K + +NG V G+ Q+ R
Sbjct: 211 FFEFGKMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQ----QLYVGRA 266
Query: 187 RQR 189
++R
Sbjct: 267 QKR 269
>gi|388512737|gb|AFK44430.1| unknown [Medicago truncatula]
Length = 291
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 89/182 (48%), Gaps = 33/182 (18%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN E + LF + G V + D+ + +GFV M EE +A+++
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMNTVEEAESAVEK 169
Query: 89 LNGQIVNEKPLKIEAAT--------SRKGPNT--PTTKVFVGNLS---DNTRAPEVRELF 135
NG N + L + A+ + + P T P +++V NL+ DN+R + ++F
Sbjct: 170 FNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSR---LEQVF 226
Query: 136 VPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
+G +V +V R +GFV + D ++N I L+G ++G+ ++V ++ R
Sbjct: 227 SEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAEDRP 286
Query: 187 RQ 188
R+
Sbjct: 287 RR 288
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 21/173 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + I F +G ++ C V K YGFVH E +E
Sbjct: 82 PSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEE 141
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRK----GPNTPT-TKVFVGNLSDNTRAPEVRELF 135
T+I ++NG ++N K + + RK G T V+V N +++ +++E F
Sbjct: 142 AANTSIDKVNGMLLNGKKVYVGKFIPRKEQELGEKAKLFTNVYVKNFTEDFDDEKLKEFF 201
Query: 136 VPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGM-MVDGKPMKV 179
PYG + ++ + +GFV ++ + + ++ LNG M +GK + V
Sbjct: 202 EPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYV 254
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 33/181 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N E ++ FE YGK+ V+ K +GFV E E A++ LN
Sbjct: 183 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 242
Query: 91 GQIVNE-KPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G+ + E K L K E ++ + ++V NL D +R
Sbjct: 243 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 302
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSPDINKC-IKELNGMMVDGKPMKVQISTS 184
F PYG + ++ + +GFV + C + ELNG +V KP+ V ++
Sbjct: 303 IAFSPYGNITSAKVMTDEEGRSKGFGFVCFNPESEATCAVTELNGRVVGSKPLYVALAQR 362
Query: 185 R 185
+
Sbjct: 363 K 363
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 24/159 (15%)
Query: 55 LFEKY---GKVVECDVVKN--------YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103
LF+K+ G V+ V ++ Y +V+ + + A+ +N +V KP++I
Sbjct: 18 LFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRI-- 75
Query: 104 ATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFV 153
S++ P+ + VF+ NL + + F +G ++ C + + YGFV
Sbjct: 76 MWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFV 135
Query: 154 HIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQRPG 191
H ++ + N I ++NGM+++GK + V R Q G
Sbjct: 136 HFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQELG 174
Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRT 84
SV +++ N++ + +R F YG + V+ K +GFV + E
Sbjct: 281 SVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNPESEATC 340
Query: 85 AIKELNGQIVNEKPLKIEAATSRK 108
A+ ELNG++V KPL + A ++
Sbjct: 341 AVTELNGRVVGSKPLYVALAQRKE 364
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 78/157 (49%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ + E+G A++EL
Sbjct: 49 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 108
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 109 NYTVIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKV 166
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 167 AQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK 203
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 118 CRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGY 177
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + K E + + T ++V N+
Sbjct: 178 GFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDL 237
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGKP 176
+ E R+LF +G + I R+ +GFV +I + ++ LN G+
Sbjct: 238 DVTDDEFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASVAVETLNDTEFHGQK 297
Query: 177 MKV 179
+ V
Sbjct: 298 LYV 300
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ + + R LFEK+G + + ++ +GFV+ E A++ LN
Sbjct: 230 IYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASVAVETLN 289
Query: 91 -----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E+ L+ EAA K +++ NL+D+ ++R+
Sbjct: 290 DTEFHGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRD 349
Query: 134 LFVPYGTVVECDIVRN 149
+F P+GT+ ++R+
Sbjct: 350 MFTPFGTITSAKVMRD 365
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E+ E
Sbjct: 92 PSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVAIDDDGVSKGYGFVHFESIE 151
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVRE 133
AI+++NG ++N K + + R + T V+V N N ++ +
Sbjct: 152 AANKAIEKVNGMLLNGKKVYVGKFIPRAEREKEIGEKSKKYTNVYVKNFGRNLTQEQLYD 211
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPM---KVQIS 182
LF YGT+ C ++ N +GF+ + P+ K + E+N ++G + + Q
Sbjct: 212 LFKNYGTITSCVVMANPDGTSKGFGFIAFEEPESAEKAVTEMNNYELNGTNLYVGRAQKK 271
Query: 183 TSRVRQ 188
+ R+++
Sbjct: 272 SERIKE 277
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 88/183 (48%), Gaps = 26/183 (14%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++P + L+ F G+++ V ++ Y +V+ E + +
Sbjct: 14 LYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLDTM 73
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP++I S++ P+ + VF+ NL + + + F +G ++ C +
Sbjct: 74 NFDLLKGKPIRI--MWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKV 131
Query: 147 V-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIG 198
+ YGFVH +S + NK I+++NGM+++GK + V R + E IG
Sbjct: 132 AIDDDGVSKGYGFVHFESIEAANKAIEKVNGMLLNGKKVYVGKFIPRAER-----EKEIG 186
Query: 199 QKS 201
+KS
Sbjct: 187 EKS 189
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
++I N++ + +R F ++G + V+ K +GFV EE AI E++G
Sbjct: 298 VYIKNLDDTFDNDRLRKEFSQFGAITSAKVMTEGGRSKGFGFVCFSTPEEASKAITEMDG 357
Query: 92 QIVNEKPLKIEAA 104
+++ KP+ + A
Sbjct: 358 RMIGSKPIYVALA 370
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 26/182 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYG 72
CR M P G +FI N++ + + F +G ++ C VV K YG
Sbjct: 116 CRIMWSQRDPAVRKSGLGNVFIKNLDKTIDNKALLDTFSAFGNILSCKVVTDENGSKGYG 175
Query: 73 FVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-----GPN-TPTTKVFVGNLSDNT 126
FVH E E TAI ++NG ++N K + + RK G T T VFV NL ++T
Sbjct: 176 FVHYETQEAAETAIAKVNGMVINGKQVFVGIFVPRKERVELGEGVTKFTNVFVKNLPEDT 235
Query: 127 RAPEVRELFVPYGTVVECDIVRN--------YGFVHIDS-PDINKCIKELNGMMVDGKPM 177
+ ++F +G + I+++ +GFV + D + LNG + GK +
Sbjct: 236 TDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNALNGTELAGKTL 295
Query: 178 KV 179
V
Sbjct: 296 FV 297
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 37/181 (20%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVEC--------DVVKNYGFVHMENDEEGRTAIKEL 89
+F+ N+ T+ + +F K+GK+ D K +GFV E E+ + A+ L
Sbjct: 226 VFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNAL 285
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTTK------------------VFVGNLSDNTRAPEV 131
NG + K L + A +K K ++V NL D ++
Sbjct: 286 NGTELAGKTLFV-ARAQKKAEREAELKQRYDALRLERINKYQGINLYVKNLDDAIDEDKI 344
Query: 132 RELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDG--KPMKVQI 181
R F P+GT+ I+R+ +GF+ S + K + E+NG + G KP+ V +
Sbjct: 345 RTEFAPFGTITSVKIMRDEKGKSRGFGFICFSSAEEATKAVTEMNGQTIQGFPKPLYVAL 404
Query: 182 S 182
+
Sbjct: 405 A 405
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 78/166 (46%), Gaps = 20/166 (12%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++P + + +F G VV V ++ Y +V+ + A+ L
Sbjct: 47 LYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAERALDTL 106
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P + VF+ NL + + F +G ++ C +
Sbjct: 107 NYSLIRGKPCRI--MWSQRDPAVRKSGLGNVFIKNLDKTIDNKALLDTFSAFGNILSCKV 164
Query: 147 V------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSR 185
V + YGFVH ++ + + I ++NGM+++GK + V I R
Sbjct: 165 VTDENGSKGYGFVHYETQEAAETAIAKVNGMVINGKQVFVGIFVPR 210
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 91 PSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEE 150
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I +NG ++N K + + RK T V+V N ++ ++++
Sbjct: 151 AANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKD 210
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMKV 179
+F YGT+ ++ R +GFV + PD + + ELNG V +GK M V
Sbjct: 211 MFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N + + ++ +FEKYG + V+ + +GFV E+ + A+ ELN
Sbjct: 194 VYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 253
Query: 91 GQIVNE-----------------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTR 127
G+ V E + LK+E +G N ++V NL D+
Sbjct: 254 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-----LYVKNLDDSID 308
Query: 128 APEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+R+ F P+GT+ ++ + +GFV +P + K + E+NG ++ KP+ V
Sbjct: 309 DERLRKEFAPFGTITSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVA 368
Query: 181 ISTSR 185
++ +
Sbjct: 369 LAQRK 373
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 25/144 (17%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q +L +++RY +++ N++ E +R F +G +
Sbjct: 281 KFEQLKLERLNRYQG------------------VNLYVKNLDDSIDDERLRKEFAPFGTI 322
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK 116
V+ K +GFV EE A+ E+NG+I+ KPL + A ++
Sbjct: 323 TSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLAS 382
Query: 117 VFVGNLSDNTRAPEVRELFVPYGT 140
++ L+ N R ++ ++F P G
Sbjct: 383 QYMQRLA-NMRMQQMGQIFQPGGA 405
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 18/166 (10%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P GT IF+ N++ + + F +G ++ C V KNYGFVH E++E
Sbjct: 96 PSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEE 155
Query: 81 EGRTAIKELNGQIVNEKPLKIE---AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVP 137
+ AI+++NG + K + + + R +T T ++V N D +++LF P
Sbjct: 156 SAKEAIEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKQLFSP 215
Query: 138 YGTVVECDIV-----RNYGFV-HIDSPDINKCIKELNGMMV--DGK 175
YG + + R + F+ + D+ ++ LNG + DGK
Sbjct: 216 YGEITSMIVKSDNKNRKFCFINYSDADSARNAMENLNGKKITEDGK 261
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCI 164
P +++ NL D+ ++ELF PYGT+ ++++ +GFV + + NK +
Sbjct: 405 PGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAV 464
Query: 165 KELNGMMVDGKPMKVQIST------SRVRQR 189
E++ +++GKP+ V ++ SR++QR
Sbjct: 465 TEMHLKIINGKPLYVGLAEKREHRLSRLQQR 495
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 20 INISCRN-MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------Y 71
+N RN PG + ++I N++ + + ++ LFE YG + V+K+ +
Sbjct: 396 LNTESRNKHPGVN------LYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGF 449
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
GFV EE A+ E++ +I+N KPL + A R+
Sbjct: 450 GFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKRE 486
>gi|354499752|ref|XP_003511970.1| PREDICTED: polyadenylate-binding protein 5-like [Cricetulus
griseus]
gi|344240775|gb|EGV96878.1| Polyadenylate-binding protein 5 [Cricetulus griseus]
Length = 382
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
G IFI +++ + LF +G ++ C VV K Y +VH ++ AI
Sbjct: 104 GVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIW 163
Query: 88 ELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
+NG +N + + + AA R T VFV NL DN +++ELF YG
Sbjct: 164 HMNGVWLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNLGDNMDDEKLKELFSEYG 223
Query: 140 TVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQ--- 188
++R+ +GFV ++ + K + +L+G +DGK + V + ++ +
Sbjct: 224 PTESVKVIRDASGKSKGFGFVRYETHEAAQKSVLDLHGKTIDGKVLYVGRAQKKIERLAE 283
Query: 189 -RPGVDEVVIGQKSVP 203
R + + + +KS P
Sbjct: 284 LRRRFERLKLKEKSRP 299
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 77/182 (42%), Gaps = 31/182 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N+ E ++ LF +YG V+ K +GFV E E + ++ +L+
Sbjct: 201 VFVKNLGDNMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKSVLDLH 260
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++ K L + E ++ P +++ NL + +++E
Sbjct: 261 GKTIDGKVLYVGRAQKKIERLAELRRRFERLKLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G++ ++ + + V S + K + E+NG ++ KP+ V + +R
Sbjct: 321 EFSSFGSISRAKVMMEMGQGKGFAVVCFSSFEEATKAVDEMNGPVLGSKPLSVTLGQARH 380
Query: 187 RQ 188
R
Sbjct: 381 RW 382
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/156 (18%), Positives = 70/156 (44%), Gaps = 16/156 (10%)
Query: 40 IGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKELNG 91
+G++ P + +++ F G + + ++ YG+V+ + A+ +N
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 QIVNEKPLKIEAAT-SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 147
++N KP ++ + + + +F+ +L + + LF +G ++ C +V
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKVVCDD 141
Query: 148 ---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
+ Y +VH DS N+ I +NG+ ++ + + V
Sbjct: 142 NGSKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV 177
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 42/182 (23%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVV-------ECDVVKNYGFVHMENDEEGRTAIKELN 90
+++ N++P E ++ F ++GK+ E V + +GF++ EN ++ + A++ LN
Sbjct: 195 LYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRALETLN 254
Query: 91 GQIVNEKPLKIEAATSR----------------------KGPNTPTTKVFVGNLSDNTRA 128
G + K + I A + KG N V+V N+ D+
Sbjct: 255 GSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSN-----VYVKNIDDDVTD 309
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQ 180
E+RE F +GT+ ++R+ +GFV +PD + + L G M GKP+ +
Sbjct: 310 EELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLA 369
Query: 181 IS 182
I+
Sbjct: 370 IA 371
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 24/183 (13%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAI 86
G +F+ N++ + ++ LF+K+G V+ V K YGFV E++E AI
Sbjct: 100 GIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVATSDDGKSKGYGFVQFESEESANAAI 159
Query: 87 KELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
+ LNG V +K + + + P+ T ++V NL ++E F +G +
Sbjct: 160 ESLNGFTVGDKQIYVGKFVRKSDRVLANPDIKYTNLYVKNLDPEIGEEHLQEKFSEFGKI 219
Query: 142 V-------ECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVD 193
E + R +GF++ + S D + ++ LNG + K + + +R +++ +
Sbjct: 220 SSMIISRDENGVSRGFGFINFENSDDAKRALETLNGSQLGSKVIYI----ARAQKKTERE 275
Query: 194 EVV 196
EV+
Sbjct: 276 EVL 278
Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ + E +R F ++G + ++ K +GFV N +E + A+ L
Sbjct: 298 VYVKNIDDDVTDEELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQ 357
Query: 91 GQIVNEKPLKIEAATSRK 108
G + + KPL + A ++
Sbjct: 358 GCMFHGKPLYLAIAQRKE 375
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G+ +FI N++P + + F +G ++ C + K Y
Sbjct: 115 CRIMWSQRDPSLRKTGSGNVFIKNLDPSIDNKALHDTFSAFGNILSCKIALDESGNSKGY 174
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E +E AIK +NG ++N+K + + +K T V+V NL +
Sbjct: 175 GFVHYETEEAADNAIKHVNGMLLNDKKVYVGRHVPKKERQAKIEQFRAKFTNVYVKNLDE 234
Query: 125 NTRAPEVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGKP 176
+ + E E+ +G + + + +GFV+ ++ D K + LN GK
Sbjct: 235 SVKDEEFNEMLAKFGPITSALVQTDDEGKSKGFGFVNFENHEDAQKAVDALNETEHKGKI 294
Query: 177 MKV 179
+ V
Sbjct: 295 LYV 297
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
+++ N++ E + K+G + V K +GFV+ EN E+ + A+ LN
Sbjct: 227 VYVKNLDESVKDEEFNEMLAKFGPITSALVQTDDEGKSKGFGFVNFENHEDAQKAVDALN 286
Query: 91 -----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+I+ E+ L+ E A K +++ NL D+ ++R+
Sbjct: 287 ETEHKGKILYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDEKLRQ 346
Query: 134 LFVPYGTVV-------ECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F YG + E D + +GFV SPD K + E+NG M+ KP+ V ++ +
Sbjct: 347 EFSVYGVITSAKVMCDEKDTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVALAQRK 406
Query: 186 VRQR 189
+R
Sbjct: 407 EIRR 410
>gi|193850551|gb|ACF22879.1| RNA-binding protein [Glycine max]
Length = 302
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
KIF+GN+ E + LFE+ G V +V+ N +GFV M EE A+K
Sbjct: 125 KIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKM 184
Query: 89 LNGQIVNEKPLKIEAATSRKG------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVV 142
+G +N + L + A + + +V+VGNL + + ++F +G V
Sbjct: 185 FSGYELNGRVLTVNKAAPKGAQPERPPRPPQSFRVYVGNLPWDVDNSRLEQIFSEHGKVE 244
Query: 143 ECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
+ +V R +GFV + S D+N I L+G +DG+ ++V ++ R
Sbjct: 245 DARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRVNVAAQR 296
Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
+F++++GN+ + +F ++GKV + VV + +GFV M ++ + AI
Sbjct: 216 SFRVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAI 275
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNT 112
L+GQ ++ + +++ A R P++
Sbjct: 276 AALDGQSLDGRAIRVNVAAQRPKPSS 301
>gi|238010804|gb|ACR36437.1| unknown [Zea mays]
Length = 262
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 26/176 (14%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
++F+GN+ + LFE+ G V +V+ + +GFV M + EE A+
Sbjct: 81 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVD 140
Query: 88 ELNGQIVNEKPLKIEAA------TSRKGPNTP---TTKVFVGNLSDNTRAPEVRELFVPY 138
+ NG +++ + L++ + S + P P +V+VGNLS + LF
Sbjct: 141 QFNGYVLDGRSLRVNSGPPPPRDRSSRSPQRPRGDANRVYVGNLSWGVDNSALANLFSEQ 200
Query: 139 GTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
G V+E I+ R +GFV S ++ I L+G +DG+ ++V ++ S+
Sbjct: 201 GEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDGADLDGRQIRVTVAESK 256
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 16/91 (17%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKE 166
+VFVGNL + + ++ LF G+V +++ R +GFV + S ++ + +
Sbjct: 82 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQ 141
Query: 167 LNGMMVDGKPMKVQIS-------TSRVRQRP 190
NG ++DG+ ++V +SR QRP
Sbjct: 142 FNGYVLDGRSLRVNSGPPPPRDRSSRSPQRP 172
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 25/178 (14%)
Query: 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEE 81
V +++GN+ + LF +G++V VV + YGFV +
Sbjct: 291 LKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRC 350
Query: 82 GRTAIKELNGQIVNEKPLKIEAA--------TSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
AIK +NG++V + L++ A + + T K++V NLS + +
Sbjct: 351 ASEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIH 410
Query: 134 LFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
LF+P+G V + ++ YGFV SP + + LNG +VDG+ ++V++S
Sbjct: 411 LFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVS 468
Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+++ N++ + + + LF +G+V V K+ YGFV + A+
Sbjct: 393 KLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIH 452
Query: 89 LNGQIVNEKPLKIEAA--------TSRKGPNTPTT-------KVFVGNLSDNTRAPEVRE 133
LNG++V+ + +++ + ++ + P+T T ++V N+ + ++ E
Sbjct: 453 LNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVE 512
Query: 134 LFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQIS 182
LF+P+G + +V + YGF+ DS K I +NG +V G+ + V+++
Sbjct: 513 LFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVA 570
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+++ N+ + + LF +GK+ VV K YGF+ + E AI +
Sbjct: 496 LYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAM 555
Query: 90 NGQIVNEKPLKIEAA---------TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
NG +V + + + A + + +++++ NL + A ++ LF P+G
Sbjct: 556 NGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQ 615
Query: 141 VVECDIVRNYGFV-HIDSPDINKCIKELNGMMVDGKPMKVQIS 182
+ + + Y V + D+P K ++ ++G MV+GK + V+ S
Sbjct: 616 ITKVLMNLEYSLVWYADAPSAIKAVQHMDGYMVEGKRLVVKRS 658
Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
+++I N+ + + + LF +G++ + + Y V + A++ ++G +V
Sbjct: 591 RLYITNLPRSMTADKMVNLFAPFGQITKVLMNLEYSLVWYADAPSAIKAVQHMDGYMVEG 650
Query: 97 KPLKIE-----AATSRKGPNTPTTKV-----FVGNLSDNTRAPEVRELFVPYGTVVECDI 146
K L ++ + + P ++ +VG + + + +LF P+G VV+ +
Sbjct: 651 KRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARM 710
Query: 147 VR--NYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQIS 182
R YG V D+P I L+G + G + V+++
Sbjct: 711 FRFQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVA 749
Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--NYGFVHMENDEEGRTAIKELNGQIVN 95
+++G V + + LF +G+VV+ + + YG V +N AI L+G +
Sbjct: 681 LYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVRFDNPSCAAAAIDHLDGYQIG 740
Query: 96 EKPLKIEAA-------------TSRKGPNTP----TTKVFVGNLSDNTRAPEVRELFVPY 138
L + A TS+ N T ++V +L + +LF+P
Sbjct: 741 GSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPC 800
Query: 139 GTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQIS 182
G + + +V + +GFV D+ + +NG +DG ++V+I+
Sbjct: 801 GQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIA 853
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + I F +G ++ C V K YGFVH E +E
Sbjct: 82 PSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEE 141
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
T+I ++NG ++N K + + RK T V+V N +++ +++E
Sbjct: 142 AANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKE 201
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGM-MVDGKPMKV 179
F PYG + ++ + +GFV ++ + + ++ LNG M +GK + V
Sbjct: 202 FFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYV 256
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 33/181 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N E ++ FE YGK+ V+ K +GFV E E A++ LN
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Query: 91 GQIVNE-KPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G+ + E K L K E ++ + ++V NL D +R
Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 304
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSPDINKC-IKELNGMMVDGKPMKVQISTS 184
F PYG + ++ + +GFV ++P C + ELNG +V KP+ V ++
Sbjct: 305 VAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAPSEATCAVTELNGRVVGSKPLYVALAQR 364
Query: 185 R 185
+
Sbjct: 365 K 365
Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRT 84
SV +++ N++ + +R F YG + V+ K +GFV E
Sbjct: 283 SVFGVNLYVKNLDDTIDDDRLRVAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAPSEATC 342
Query: 85 AIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVP 137
A+ ELNG++V KPL + A ++ ++ +++ R ++ ++F P
Sbjct: 343 AVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHMT-GMRMQQLGQIFQP 394
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 133 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDESGASKGY 192
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T ++V N+
Sbjct: 193 GFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPV 252
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGK 175
E RELF +G V + R+ +GFV+ I+ + ELNG G+
Sbjct: 253 EATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAATAVDELNGKDFKGQ 312
Query: 176 PMKV 179
+ V
Sbjct: 313 DLYV 316
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 56/246 (22%), Positives = 91/246 (36%), Gaps = 85/246 (34%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
I++ N+ + E R LFEK+G V + ++ +GFV+ N E TA+ EL
Sbjct: 245 IYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAATAVDEL 304
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
NG+ + L + EAA K ++V NL D+ ++R
Sbjct: 305 NGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVDDEKLR 364
Query: 133 ELFVPYGTVVECDIVRN------------------------------------------- 149
ELF P+G + ++R+
Sbjct: 365 ELFTPFGAITSAKVMRDSAAETAEAEKKEEEKNKENKKEGDAEEGEKADGEKKEAPKSEK 424
Query: 150 --------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQK 200
+GFV +PD K I ++N MV+GKP+ V ++ + +V GQ
Sbjct: 425 RTVGKSKGFGFVCFSNPDEATKAIADMNQNMVNGKPLYVALAQRK--------DVRKGQL 476
Query: 201 SVPVQA 206
+QA
Sbjct: 477 EASIQA 482
>gi|226509575|ref|NP_001149184.1| LOC100282806 [Zea mays]
gi|195625314|gb|ACG34487.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 24/173 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+++GN+ E + +F++ G V +V+ N +GFV M EE AI+
Sbjct: 109 KVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAIEM 168
Query: 89 LNGQIVNEKPLKIEAATSR----KGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N ++ + L + A+SR + P P + +VGNL + +LF +G V
Sbjct: 169 FNRYDISGRLLNVNRASSRGTRMERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEV 228
Query: 142 VECDIV--------RNYGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
V+ +V R +GFV + ++N I L+G +DG+P++V ++ R
Sbjct: 229 VDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQELDGRPLRVNVAAER 281
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
F+ ++GN+ + LF ++G+VV+ VV + +GFV M + EE AI
Sbjct: 201 AFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAI 260
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ ++ +PL++ A R
Sbjct: 261 SALDGQELDGRPLRVNVAAER 281
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 21/173 (12%)
Query: 22 ISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGF 73
+ P S + +++G ++P + ++ LF G+V V ++ Y +
Sbjct: 35 VESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAY 94
Query: 74 VHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPE 130
V+ N +G A+++LN ++ KP +I S++ P T VF+ NL
Sbjct: 95 VNYNNTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKA 152
Query: 131 VRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
+ + F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 153 LHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK 205
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 120 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 179
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T V++ N+
Sbjct: 180 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQ 239
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 168
+ E RELF +G + + R+ +GFV+ + + + E+N
Sbjct: 240 DVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMN 291
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 24/149 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N++ + E R LFEK+G++ + ++ +GFV+ E + A+ E+N
Sbjct: 232 VYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMN 291
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ + + L + EAA K ++V NL+D+ ++RE
Sbjct: 292 EKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRE 351
Query: 134 LFVPYGTVVECDIVRNYGFVHIDSPDINK 162
LF PYGT+ ++R+ +P+ +K
Sbjct: 352 LFGPYGTITSAKVMRDTNIERTQTPESDK 380
>gi|41055734|ref|NP_956476.1| TIA1 cytotoxic granule-associated RNA binding protein 1 [Danio
rerio]
gi|28277744|gb|AAH45485.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
gi|44890544|gb|AAH66734.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
Length = 342
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 38/206 (18%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK 87
F +F+G+++P S + +R F +GK+ + VVK+ YGF+ N + +AI+
Sbjct: 97 FHVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQ 156
Query: 88 ELNGQIVNEKPLKIEAATSRKGPNTPTTK------------------------VFVGNLS 123
++NGQ + + ++ AT + P+ P + V+ G ++
Sbjct: 157 QMNGQWLGGRQIRTNWATRK--PSAPKSNNEGASSKHLSYEEVLNQSSPSNCTVYCGGIA 214
Query: 124 DNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQ 180
+R+ F P+G ++E + + Y FV DS + I +NG ++G +K
Sbjct: 215 SGLSDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFDSHEGAAHAIVSVNGTCIEGHTVKCY 274
Query: 181 ISTSRVRQRPGVDEVVIGQKSVPVQA 206
R + ++ + Q++ P A
Sbjct: 275 WGKETADMR-SMQQMPMPQQNKPTYA 299
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 80/166 (48%), Gaps = 18/166 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEEGRTAIKELNG 91
+++GN++ + LI +F + G C ++ + Y FV + A+ +NG
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYCFVEFYENRHAAAALAAMNG 70
Query: 92 QIVNEKPLKIEAAT---SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+ + K +K+ A+ S+K + VFVG+LS +VR F P+G + + +V+
Sbjct: 71 RKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVK 130
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+ YGF+ I+ D I+++NG + G+ ++ +T +
Sbjct: 131 DLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRK 176
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N+ + + F +G ++ C VV + +GFVH E E
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
+ AI +NG ++N++ + + SR+ T ++V NL + +++L
Sbjct: 151 AQQAISTMNGMLLNDRKVFVGHFKSRREREAELRARAMEFTNIYVKNLQVDMDEQGLQDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G ++ ++ R +GFV+ + + K + ++NG V G+ + V + RV
Sbjct: 211 FSQFGKLLSVKVMKDNNGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRQLYVGRAQKRV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 31/183 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N+ + ++ LF ++GK++ V+K+ +GFV+ E EE + A+ ++N
Sbjct: 193 IYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKDNNGHSRGFGFVNFEKHEEAQKAVMDMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ V+ + L + A R + ++V NL D+ ++R+
Sbjct: 253 GKEVSGRQLYVGRAQKRVERQNELKRKFEQMKQDRLNRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRV 186
F PYG + ++ + +GFV SP + K + E+NG ++ KP+ V ++ +
Sbjct: 313 EFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQRKE 372
Query: 187 RQR 189
+R
Sbjct: 373 ERR 375
Score = 43.1 bits (100), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F YG + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVP 137
+I+ KPL + A ++ + ++ LS +R L VP
Sbjct: 356 RIIGTKPLYVALAQRKEERRAILSNQYMQRLST------MRALGVP 395
Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 159
GP P ++VG+L + + E F+P G ++ + R+ Y +++ P D
Sbjct: 5 GPGYPLASLYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPAD 64
Query: 160 INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIG 198
+ + +N ++ G+P+++ S ++ PG+ + +G
Sbjct: 65 AERALDTMNFEVIKGQPIRIMWS----QRDPGLRKSGVG 99
>gi|222629794|gb|EEE61926.1| hypothetical protein OsJ_16667 [Oryza sativa Japonica Group]
Length = 1011
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 25/178 (14%)
Query: 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEE 81
V +++GN+ + LF +G++V VV + YGFV +
Sbjct: 290 LKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRC 349
Query: 82 GRTAIKELNGQIVNEKPLKIEAA--------TSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
AIK +NG++V + L++ A + + T K++V NLS + +
Sbjct: 350 ASEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIH 409
Query: 134 LFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
LF+P+G V + ++ YGFV SP + + LNG +VDG+ ++V++S
Sbjct: 410 LFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVS 467
Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+++ N+ + + LF +GK+ VV K YGF+ + E AI +
Sbjct: 506 LYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAM 565
Query: 90 NGQIVNEKPLKIEAA---------TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
NG +V + + + A + + +++++ NL + A ++ LF P+G
Sbjct: 566 NGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQ 625
Query: 141 VVECDIVRNYGFV-HIDSPDINKCIKELNGMMVDGKPMKVQIS 182
+ + + Y V + D+P K ++ ++G MV+GK + V+ S
Sbjct: 626 ITKVLMNLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRS 668
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 43/189 (22%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+++ N++ + + + LF +G+V V K+ YGFV + A+
Sbjct: 392 KLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIH 451
Query: 89 LNGQIVNEKPLKIEAA---------------TSR----KGPNTPTT-------KVFVGNL 122
LNG++V+ + +++ + T+R + P+T T ++V N+
Sbjct: 452 LNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNM 511
Query: 123 SDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVD 173
+ ++ ELF+P+G + +V + YGF+ DS K I +NG +V
Sbjct: 512 PSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVG 571
Query: 174 GKPMKVQIS 182
G+ + V+++
Sbjct: 572 GEMIIVRVA 580
Score = 43.1 bits (100), Expect = 0.068, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
+++I N+ + + + LF +G++ + + Y V + A++ ++G +V
Sbjct: 601 RLYITNLPRSMTADKMVNLFAPFGQITKVLMNLEYSLVWYADAPSATKAVQHMDGYMVEG 660
Query: 97 KPLKIE-----AATSRKGPNTPTTKV-----FVGNLSDNTRAPEVRELFVPYGTVVECDI 146
K L ++ + + P ++ +VG + + + +LF P+G VV+ +
Sbjct: 661 KRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARM 720
Query: 147 VR--NYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQIS 182
R YG V D+P I L+G + G + V+++
Sbjct: 721 FRFQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVA 759
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--NYGFVHMENDEEGRTAIKELNGQIVN 95
+++G V + + LF +G+VV+ + + YG V +N AI L+G +
Sbjct: 691 LYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVRFDNPSCAAAAIDHLDGYQIG 750
Query: 96 EKPLKIEAA-------------TSRKGPNTP----TTKVFVGNLSDNTRAPEVRELFVPY 138
L + A TS+ N T ++V +L + +LF+P
Sbjct: 751 GSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPC 810
Query: 139 GTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQIS 182
G + + +V + +GFV D+ + +NG +DG ++V+I+
Sbjct: 811 GQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIA 863
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 18/174 (10%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P G +FI N+ + + F +G V+ C V K +
Sbjct: 97 RIMFSHRD-PLIRKTGFANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMDSNGHSKGH 155
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-TKVFVGNLSDNTRAPE 130
GFV +ND+ + AI++L+G+++N+K + + + ++P T V+V NLS++ +
Sbjct: 156 GFVQFDNDQSAKNAIEKLDGRLMNDKKVYVGYFVRCQERSSPKFTNVYVKNLSESYTNED 215
Query: 131 VRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMV-DGK 175
+++LF +G + I+++ +GFV+ S D +++LNG DGK
Sbjct: 216 LKQLFNTFGVITSVKIMKDENGNSKRFGFVNFQSSDSAATAVEKLNGSTTNDGK 269
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 88/194 (45%), Gaps = 38/194 (19%)
Query: 25 RNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHME 77
R+ P F++V ++ N++ + E ++ LF +G + ++K+ +GFV+ +
Sbjct: 194 RSSPKFTNV-----YVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSKRFGFVNFQ 248
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVF------------------V 119
+ + TA+++LNG N+ + +K K F +
Sbjct: 249 SSDSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYL 308
Query: 120 GNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMM 171
N+ + +++ELF +GT+ C ++ + GFV +P + +K I E+NG +
Sbjct: 309 KNIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKI 368
Query: 172 VDGKPMKVQISTSR 185
+ KP+ V ++ +
Sbjct: 369 IGQKPVYVSVAQRK 382
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 24/173 (13%)
Query: 29 GFSSVGTFK---IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHME 77
+S G F+ +++G++ + + LF + V+ V ++ YG+V+
Sbjct: 15 ALTSAGRFENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYS 74
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 134
N + A++ LN +N KP++I S + P T +F+ NL + + E
Sbjct: 75 NARDAANAMENLNYVPLNGKPIRI--MFSHRDPLIRKTGFANLFIKNLETSIDNKALHET 132
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 179
F +G V+ C + + +GFV D+ K I++L+G +++ K + V
Sbjct: 133 FSVFGNVLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYV 185
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ + E ++ LF ++G + C V+ K GFV EE AI E+N
Sbjct: 306 LYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMN 365
Query: 91 GQIVNEKPLKIEAATSRK 108
G+I+ +KP+ + A ++
Sbjct: 366 GKIIGQKPVYVSVAQRKE 383
>gi|452824262|gb|EME31266.1| arginine/serine-rich splicing factor, putative [Galdieria
sulphuraria]
Length = 483
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 83/166 (50%), Gaps = 18/166 (10%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG----Q 92
++++GN+ P +V I+ LFE++ + D+ + FV +E+ E+ AI+ LNG +
Sbjct: 58 QLYVGNIPPDATVPQIQKLFEEFQPIARVDLKSGFAFVFLEDGEQAERAIRLLNGTKNEE 117
Query: 93 IVNEKPLKIEAATS------------RKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
+ + LK+E A R+ PT +FV N R ++ +F +G
Sbjct: 118 LFGFRTLKVEYAKDASLVKQREEERKRRAERNPTESLFVTNFPSYFRERDLERIFDQFGK 177
Query: 141 VVECDIVRNYGFVHIDS-PDINKCIKELNGMMV-DGKPMKVQISTS 184
VV +I+R+Y FV S D + ++++ + DG+ + V+ T+
Sbjct: 178 VVNVEIIRSYAFVTFASIKDASFAYEKMHHFTLDDGRELHVEYVTA 223
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 26/177 (14%)
Query: 18 NQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------- 70
N S N P +S +++G ++P + ++ LF G+V V ++
Sbjct: 39 NSTPASAANQPHSAS-----LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSL 93
Query: 71 -YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNT 126
Y +V+ N +G A+++LN ++ KP +I S++ P T VF+ NL
Sbjct: 94 GYAYVNYNNTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAI 151
Query: 127 RAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
+ + F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 152 DNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK 208
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 123 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 182
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T V++ NL
Sbjct: 183 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDS 242
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 168
E R++F +G + + R+ +GFV+ + + ++E+N
Sbjct: 243 EIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMN 294
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 24/155 (15%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N++ + R +FEK+G++ + ++ +GFV+ E + A++E+N
Sbjct: 235 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMN 294
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ + + L + EAA K ++V NL+D+ ++RE
Sbjct: 295 DKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRE 354
Query: 134 LFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELN 168
LF PYGT+ ++R+ SP+ KE N
Sbjct: 355 LFGPYGTITSAKVMRDTNVERESSPESAGKEKEAN 389
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 15/166 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEK 97
+++ N+ E +R LF YG + V+++ ++E + +A KE N+K
Sbjct: 338 LYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD---TNVERESSPESAGKEKEANKENDK 394
Query: 98 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS 157
AT + S+ + P+G + +GFV S
Sbjct: 395 -----EATPEAEKAEEKAEEKPAESSEEKDKEAKKSDKKPFGKS------KGFGFVCFSS 443
Query: 158 PD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKSV 202
PD +K + E+N MV+GKP+ V ++ + +R ++ + + ++
Sbjct: 444 PDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTI 489
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 84/185 (45%), Gaps = 23/185 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + I F +G ++ C V K YGFVH E +E
Sbjct: 82 PSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEE 141
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
T+I ++NG ++N K + + RK T V+V N +++ +++E
Sbjct: 142 AANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKE 201
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGM-MVDGKPMKVQISTS 184
F PYG + ++ + +GFV ++ + + ++ LNG M +GK + V +
Sbjct: 202 FFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQK 261
Query: 185 RVRQR 189
+ ++
Sbjct: 262 KAERQ 266
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 33/186 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N E ++ FE YGK+ V+ K +GFV E E A++ LN
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Query: 91 GQIVNE-KPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G+ + E K L K E ++ + ++V NL D +R
Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 304
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSPDINKC-IKELNGMMVDGKPMKVQISTS 184
F PYG + ++ + +GFV ++ C + ELNG +V KP+ V ++
Sbjct: 305 IAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQR 364
Query: 185 RVRQRP 190
+ ++
Sbjct: 365 KEERKA 370
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRT 84
SV +++ N++ + +R F YG + V+ K +GFV E
Sbjct: 283 SVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATC 342
Query: 85 AIKELNGQIVNEKPLKIEAATSRK 108
A+ ELNG++V KPL + A ++
Sbjct: 343 AVTELNGRVVGSKPLYVALAQRKE 366
>gi|414887732|tpg|DAA63746.1| TPA: hypothetical protein ZEAMMB73_977373 [Zea mays]
Length = 267
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 36/189 (19%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
K+F+GN+ + LFE+ G V +VV + +GFV M + EE A++
Sbjct: 77 LKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVE 136
Query: 88 ELNGQIVNEKPLKIEAA--TSRKG--PNTPTT---------------KVFVGNLSDNTRA 128
+ NG +PL++ R G P P KV+VGNL+
Sbjct: 137 QFNGYTFQGRPLRVNCGPPPPRDGSAPRAPRGGGGGGGGGSFVDSGNKVYVGNLAWGVDN 196
Query: 129 PEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
+ LF G V++ ++ R +GFV S ++N I L+G+ +DG+ ++V
Sbjct: 197 STLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNAISNLDGIDLDGRQIRV 256
Query: 180 QISTSRVRQ 188
++ S+ R+
Sbjct: 257 TVAESKPRR 265
Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 102 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFV 153
E A + G + K+FVGNL + + ++ LF G+V ++V R +GFV
Sbjct: 64 EGAEQQDGEFSEDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFV 123
Query: 154 HIDSP-DINKCIKELNGMMVDGKPMKV 179
+ S + +++ NG G+P++V
Sbjct: 124 TMSSAEEAGAAVEQFNGYTFQGRPLRV 150
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YG 72
+ S P S + +++G ++P + ++ LF G+V V ++ Y
Sbjct: 37 SASPSTTPSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYA 96
Query: 73 FVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAP 129
+V+ N +G A+++LN ++ KP +I S++ P T VF+ NL
Sbjct: 97 YVNYNNTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDAAIDNK 154
Query: 130 EVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
+ + F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 155 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK 208
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 123 CRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 182
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T V++ N+
Sbjct: 183 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQ 242
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E R++F +G + + R+ +GFV+ + D + E+N + G+
Sbjct: 243 EVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQK 302
Query: 177 MKV 179
+ V
Sbjct: 303 LYV 305
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N++ + E R +FEK+G++ + ++ +GFV+ + + A+ E+N
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMN 294
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ + + L + EAA K ++V NL+D+ ++RE
Sbjct: 295 DKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRE 354
Query: 134 LFVPYGTVVECDIVRN 149
LF P+GT+ ++R+
Sbjct: 355 LFSPFGTITSAKVMRD 370
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
++I N++ + E LF +YG V V K +GFV+ E+ EE + A+ L+
Sbjct: 228 LYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSKGFGFVNYESHEEAQAAVDNLH 287
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ K L + E A K ++V NL D+ ++R
Sbjct: 288 DTDLKGKKLYVTRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDDKLRA 347
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ C ++ + +GFV SPD K I E+N M+ KP+ V ++ R
Sbjct: 348 EFEPFGTITSCKVMSDEKGSSKGFGFVCFSSPDEATKAIAEMNNKMIGSKPLYVSLAQRR 407
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R ++ + + + +Q
Sbjct: 408 EVRRQQLESQIAQRNQIRMQ 427
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/192 (23%), Positives = 92/192 (47%), Gaps = 24/192 (12%)
Query: 26 NMP---GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFV 74
N+P SS + +++G ++P + +I +F G V V ++ Y +V
Sbjct: 32 NLPPQTSISSAPSASLYVGELDPTVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYV 91
Query: 75 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEV 131
+ N +G A+++LN ++ +P +I S++ P T +F+ NL + +
Sbjct: 92 NYLNTADGERALEQLNYSLIKGRPCRI--MWSQRDPALRKTGQGNIFIKNLDEQIDNKAL 149
Query: 132 RELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVQIST 183
+ FV +G V+ C + + YGFVH ++ + + IK +NGM+++ K + V
Sbjct: 150 HDTFVAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGPHI 209
Query: 184 SRVRQRPGVDEV 195
R ++ +DE+
Sbjct: 210 PRKERQSKLDEM 221
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N++ + + F +G V+ C V K Y
Sbjct: 116 CRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFVAFGNVLSCKVATDEQGRSKGY 175
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E E TAIK +NG ++N+K + + RK + T +++ NL
Sbjct: 176 GFVHYETAEAAETAIKAVNGMLLNDKKVYVGPHIPRKERQSKLDEMKAQFTNLYIKNLDT 235
Query: 125 NTRAPEVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGKP 176
E ELF YG+V + + +GFV+ +S + + L+ + GK
Sbjct: 236 EVTQEEFEELFNRYGSVTSAIVQVDDEGRSKGFGFVNYESHEEAQAAVDNLHDTDLKGKK 295
Query: 177 MKV 179
+ V
Sbjct: 296 LYV 298
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 21/173 (12%)
Query: 22 ISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGF 73
+ P S + +++G ++P + ++ LF G+V V ++ Y +
Sbjct: 35 VESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAY 94
Query: 74 VHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPE 130
V+ N +G A+++LN ++ KP +I S++ P T VF+ NL
Sbjct: 95 VNYNNTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKA 152
Query: 131 VRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
+ + F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 153 LHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK 205
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 120 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 179
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T V++ N+
Sbjct: 180 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQ 239
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 168
+ E RELF +G + + R+ +GFV+ + + + E+N
Sbjct: 240 DVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMN 291
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 24/149 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N++ + E R LFEK+G++ + ++ +GFV+ E + A+ E+N
Sbjct: 232 VYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMN 291
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ + + L + EAA K ++V NL+D+ ++RE
Sbjct: 292 EKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRE 351
Query: 134 LFVPYGTVVECDIVRNYGFVHIDSPDINK 162
LF PYGT+ ++R+ +P+ +K
Sbjct: 352 LFGPYGTITSAKVMRDTNIERTQTPESDK 380
>gi|125811664|ref|XP_001361971.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|195171077|ref|XP_002026337.1| GL20391 [Drosophila persimilis]
gi|54637147|gb|EAL26550.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|194111239|gb|EDW33282.1| GL20391 [Drosophila persimilis]
Length = 296
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 18/140 (12%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKEL 89
KI+I N+ + + F +G ++ C+V K+ YGFVH +++E R AI+++
Sbjct: 103 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 162
Query: 90 NGQIVNEKPLKIEAATSRKG----PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
NG + N + + + R+ T ++V NLS+ +RE+F PYG +
Sbjct: 163 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 222
Query: 146 IV-------RNYGFVHIDSP 158
++ R +GFV ++P
Sbjct: 223 LMLDEEGRSRRFGFVAFENP 242
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIK 165
+ K+++ NL + V + F +G ++ C++ R YGFVH DS + + I+
Sbjct: 101 SGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIE 160
Query: 166 ELNGMMVDGKPMKV 179
++NGM+ + + + V
Sbjct: 161 KVNGMLCNNQKVHV 174
>gi|196001955|ref|XP_002110845.1| hypothetical protein TRIADDRAFT_54175 [Trichoplax adhaerens]
gi|190586796|gb|EDV26849.1| hypothetical protein TRIADDRAFT_54175 [Trichoplax adhaerens]
Length = 310
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 24/193 (12%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T KIF+G ++P T + ++ F KYG V +C + K+ +GFV E+ + +
Sbjct: 7 TGKIFVGGLHPDTDSDSMKKFFNKYGNVSDCVIKKDPVTQRSRGFGFVTFEDPGCVNSVL 66
Query: 87 KE----LNGQIVNEKPL--KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
L+G+ ++ KP K + A N T KVF+G ++ NT E+++ F +G
Sbjct: 67 NAGPHLLDGKQIDPKPAVQKGQPAPQASPSNVNTNKVFIGGVAQNTSEDEIKKYFSSFGQ 126
Query: 141 VVECDI--------VRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQR--P 190
V + +R +GFV ++ + K ++ ++GK ++V+++ R R P
Sbjct: 127 VKNVQLMYDKTTKRMRGFGFVTFENDETVKKTCGVHFHNINGKSVEVKLAEDRSANRGVP 186
Query: 191 GVDEVVIGQKSVP 203
G V G + P
Sbjct: 187 GSQSNVYGGGNFP 199
Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDV--------VKNYGFVHMENDEEG 82
S+V T K+FIG V TS + I+ F +G+V + ++ +GFV ENDE
Sbjct: 96 SNVNTNKVFIGGVAQNTSEDEIKKYFSSFGQVKNVQLMYDKTTKRMRGFGFVTFENDE-- 153
Query: 83 RTAIKELNG---QIVNEKPLKIEAATSR 107
+K+ G +N K ++++ A R
Sbjct: 154 --TVKKTCGVHFHNINGKSVEVKLAEDR 179
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 22/183 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G +F+ N+ + + F +G+++ C V+ K YGFVH E E
Sbjct: 125 PGQRKRGVGNVFVKNLEKSIDNKALYDTFSTFGRILSCKVISDENGSKGYGFVHFETQES 184
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N + + SR+ + T +++ N +N + E+
Sbjct: 185 AGKAIEKMNGMLLNNLKVFVGRFKSRRERESELGVKAKDYTNIYIKNFGENMDDQRLTEI 244
Query: 135 FVPYGTVV-------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV-QISTSR 185
F YG + +C + +GFV S D + ++NG ++GK + V + R
Sbjct: 245 FAKYGPTLSVKVMTDDCGRSKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIYVGRAQKKR 304
Query: 186 VRQ 188
RQ
Sbjct: 305 ERQ 307
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 82/183 (44%), Gaps = 31/183 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVV-------ECDVVKNYGFVHMENDEEGRTAIKELN 90
I+I N + + +F KYG + +C K +GFV ++ E+ + A+ ++N
Sbjct: 227 IYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGRSKGFGFVSFQSHEDAQAAVDDMN 286
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A ++ T + +++ NL D +R+
Sbjct: 287 GKQLNGKQIYVGRAQKKRERQTELKRHFEQIKQNQHIRYQGVNLYIKNLDDTINDEHLRK 346
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRV 186
F P+GT+ ++ + +GFV S D K +E+NG +V KP+ V ++ +
Sbjct: 347 EFSPFGTITSAKVMMENGRSKGFGFVCFSSSKDAAKASREMNGKLVASKPLYVSLAQRKE 406
Query: 187 RQR 189
+R
Sbjct: 407 ERR 409
>gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|108707490|gb|ABF95285.1| polyadenylate binding protein, types 1, 2, 3, 4 family protein,
expressed [Oryza sativa Japonica Group]
gi|113548198|dbj|BAF11641.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|215678518|dbj|BAG92173.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624669|gb|EEE58801.1| hypothetical protein OsJ_10348 [Oryza sativa Japonica Group]
Length = 647
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 90/189 (47%), Gaps = 32/189 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVK-------NYGFVHMENDEEGRTAIKELN 90
+++ N++ + ELI+ F +YG V+ ++K +GFV +N E + A + +N
Sbjct: 218 LYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMN 277
Query: 91 GQIVNEKPLKIEAATSR------------KGPNTPTTK-----VFVGNLSDNTRAPEVRE 133
G ++ K L + A + + N TK V++ N++D +RE
Sbjct: 278 GMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRE 337
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPDINKC-IKELNGMMVDGKPMKVQISTSR 185
F +G + I+R+ +GFV ++P+ KC + + G+M GKP+ V I+ +
Sbjct: 338 RFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRK 397
Query: 186 VRQRPGVDE 194
+R +++
Sbjct: 398 EERRAKLEQ 406
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 19/181 (10%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDE 80
P G +F+ N+N ++ LF K+G ++ C V KN YGFV E
Sbjct: 118 PDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQE 177
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNT----PTTKVFVGNLSDNTRAPEVRELFV 136
+I+ LN + L + + +T T +++ NL D+ ++ F
Sbjct: 178 SADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFS 237
Query: 137 PYGTVVECDIV-------RNYGFVHIDSPDINKCIKE-LNGMMVDGKPMKVQISTSRVRQ 188
YG V+ I+ + +GFV +P+ K KE +NGM++ K + V + + +
Sbjct: 238 QYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAER 297
Query: 189 R 189
+
Sbjct: 298 K 298
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++ E + +F K G + V ++ YG+V+ + + A+++L
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ +KP+++ S + P+ + VFV NL+D ++ELF +G ++ C +
Sbjct: 100 NHSLILDKPIRV--MWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKV 157
Query: 147 VRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
+N YGFV + I+ LN G+ + V
Sbjct: 158 AKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHV 198
>gi|303286031|ref|XP_003062305.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455822|gb|EEH53124.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 227
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 33/182 (18%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKY---GKVVECDV----VKNYGFVHMENDEEGRTAI 86
G K+++GN++ G ++ +F +Y G V D+ + +GFV + + E AI
Sbjct: 41 GPVKLYVGNLSWGVDDSMLTDVFAEYDASGIAVISDMNTGRSRGFGFVEVPSQEIAEKAI 100
Query: 87 KELNGQIVNEKPLKI---EAATSR------KGPNTP--------TTKVFVGNLSDNTRAP 129
EL+G V+ +P+++ EA +SR +G P KV+ GNLS
Sbjct: 101 AELDGADVDGRPIRVNISEARSSRREYDGERGERAPRERNYDFDARKVYFGNLSWGMDHL 160
Query: 130 EVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQ 180
++++L YG V + ++ R +GFV + S + K + LNG VDG+ ++V
Sbjct: 161 DLQDLCGEYGEVADSRLITDRETGRSRGFGFVTMSSAEQAEKVVNGLNGQDVDGRVLRVN 220
Query: 181 IS 182
I+
Sbjct: 221 IA 222
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPY---GTVVECDI----VRNYGFVHIDSPDI-NKCIKEL 167
K++VGNLS + ++F Y G V D+ R +GFV + S +I K I EL
Sbjct: 44 KLYVGNLSWGVDDSMLTDVFAEYDASGIAVISDMNTGRSRGFGFVEVPSQEIAEKAIAEL 103
Query: 168 NGMMVDGKPMKVQISTSRVRQR 189
+G VDG+P++V IS +R +R
Sbjct: 104 DGADVDGRPIRVNISEARSSRR 125
>gi|427796859|gb|JAA63881.1| Putative glycine rich protein, partial [Rhipicephalus pulchellus]
Length = 266
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 10/108 (9%)
Query: 2 SRFDQQQLVKVSR--YSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKY 59
SR +Q L ++ +S Q++ + MP K+++G++ G V + LF KY
Sbjct: 4 SRVARQLLRGLTHCVFSFFQVSATSDTMP--------KLYVGSLPEGCDVASLEALFAKY 55
Query: 60 GKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
GKV ECD+VKNY FVHM ++EE + AI L+ + +EA+ S+
Sbjct: 56 GKVEECDIVKNYAFVHMNSEEESKLAIDALHNSEFMGGKITVEASHSK 103
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMVDG 174
K++VG+L + + LF YG V ECDIV+NY FVH++S + +K I L+ G
Sbjct: 33 KLYVGSLPEGCDVASLEALFAKYGKVEECDIVKNYAFVHMNSEEESKLAIDALHNSEFMG 92
Query: 175 KPMKVQISTSRVRQRPGV 192
+ V+ S S+VR +PG+
Sbjct: 93 GKITVEASHSKVRPKPGM 110
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 22/164 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ G + I F +G ++ C V K YGFVH E +E
Sbjct: 82 PSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNSKGYGFVHFETEE 141
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
T+I +NG ++N K + + RK T V+V N +++ +++E
Sbjct: 142 AANTSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKE 201
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNG 169
F PYG + ++ + +GFV ++ + + ++ LNG
Sbjct: 202 FFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNG 245
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 33/181 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N E ++ FE YGK+ V+ K +GFV E E A++ LN
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALN 244
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK------------------VFVGNLSDNTRAPEVR 132
G+ + E A +K K ++V NL D +R
Sbjct: 245 GKDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGVNLYVKNLDDTIDDERLR 304
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSPDINKC-IKELNGMMVDGKPMKVQISTS 184
+ F YGT+ ++ + +GFV SP+ C + ELNG ++ KP+ V ++
Sbjct: 305 KDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQR 364
Query: 185 R 185
+
Sbjct: 365 K 365
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 24/147 (16%)
Query: 55 LFEKY---GKVVECDVVKN--------YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103
LFEK+ G V+ V ++ Y +V+ + + A+ +N ++ KP++I
Sbjct: 18 LFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLIRNKPIRI-- 75
Query: 104 ATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFV 153
S++ P+ + VF+ NL + + F +G ++ C + + YGFV
Sbjct: 76 MWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNSKGYGFV 135
Query: 154 HIDSPDI-NKCIKELNGMMVDGKPMKV 179
H ++ + N I +NGM+++GK + V
Sbjct: 136 HFETEEAANTSIDRVNGMLLNGKKVYV 162
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRT 84
SV +++ N++ E +R F YG + V+ K +GFV + E
Sbjct: 283 SVFGVNLYVKNLDDTIDDERLRKDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATC 342
Query: 85 AIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
A+ ELNG+++ KPL + A ++ ++ +++ R ++ ++F P T
Sbjct: 343 AVTELNGRVIGSKPLYVALAQRKEERKAHLASQYMRHMT-GMRMQQLGQMFQPNTT 397
>gi|291231285|ref|XP_002735593.1| PREDICTED: TIA-1 related protein-like [Saccoglossus kowalevskii]
Length = 409
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG------FVHMENDEEGRTAIKELNG 91
+++GN++ + I LF + G C ++ +G FV A++ +NG
Sbjct: 16 LYVGNLDRQVTEAFILQLFGQIGPCKSCKMIAEHGGNDPYCFVEFVEHSHAAAALQTMNG 75
Query: 92 QIVNEKPLKIEAAT---SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+++ K +K+ AT S K + VFVG+LS P+++ F P+G + + +V+
Sbjct: 76 RMILGKEVKVNWATTPSSMKKDTSNHHHVFVGDLSSEVDTPDLKAAFAPFGQISDARVVK 135
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+ YGFV ++ D I+ +NG + G+ ++ +T +
Sbjct: 136 DLQTNKSKGYGFVSFLNKVDAENAIQGMNGQWLSGRAIRTNWATRK 181
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 30/172 (17%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
+F+G+++ ++ F +G++ + VVK+ YGFV N + AI+
Sbjct: 103 HVFVGDLSSEVDTPDLKAAFAPFGQISDARVVKDLQTNKSKGYGFVSFLNKVDAENAIQG 162
Query: 89 LNGQIVNEKPLKIEAATSRKGP-------------------NTPTTKVFVGNLSDNTRAP 129
+NGQ ++ + ++ AT + P + T V++G ++
Sbjct: 163 MNGQWLSGRAIRTNWATRKPPPPRQPETTKQLSYDDVCNSSSYTNTTVYIGGVTTGLTEG 222
Query: 130 EVRELFVPYGTVVECDIVRNYGFVHI---DSPDINKCIKELNGMMVDGKPMK 178
++RE F YG + E I + G+ I I +NG ++G +K
Sbjct: 223 KMRETFSHYGHIQEVRIFPDKGYAFIRFMTHESAAHAIVSVNGSQINGHMVK 274
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + I F +G ++ C V K YGFVH E +E
Sbjct: 82 PSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEE 141
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
T+I ++NG ++N K + + RK T V+V N +++ +++E
Sbjct: 142 AANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKE 201
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGM-MVDGKPMKV 179
F PYG + ++ + +GFV ++ + + ++ LNG M +GK + V
Sbjct: 202 FFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYV 256
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 33/181 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N E ++ FE YGK+ V+ K +GFV E E A++ LN
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Query: 91 GQIVNE-KPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G+ + E K L K E ++ + ++V NL D +R
Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 304
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSPDINKC-IKELNGMMVDGKPMKVQISTS 184
F PYG + ++ + +GFV ++ C + ELNG +V KP+ V ++
Sbjct: 305 IAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQR 364
Query: 185 R 185
+
Sbjct: 365 K 365
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRT 84
SV +++ N++ + +R F YG + V+ K +GFV E
Sbjct: 283 SVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATC 342
Query: 85 AIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVP 137
A+ ELNG++V KPL + A ++ ++ +++ R ++ ++F P
Sbjct: 343 AVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHMT-GMRMQQLGQIFQP 394
>gi|218192545|gb|EEC74972.1| hypothetical protein OsI_11001 [Oryza sativa Indica Group]
Length = 647
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 90/189 (47%), Gaps = 32/189 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVK-------NYGFVHMENDEEGRTAIKELN 90
+++ N++ + ELI+ F +YG V+ ++K +GFV +N E + A + +N
Sbjct: 218 LYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMN 277
Query: 91 GQIVNEKPLKIEAATSR------------KGPNTPTTK-----VFVGNLSDNTRAPEVRE 133
G ++ K L + A + + N TK V++ N++D +RE
Sbjct: 278 GMLLGSKTLYVARAQKKAERKQYLQCLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRE 337
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPDINKC-IKELNGMMVDGKPMKVQISTSR 185
F +G + I+R+ +GFV ++P+ KC + + G+M GKP+ V I+ +
Sbjct: 338 RFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRK 397
Query: 186 VRQRPGVDE 194
+R +++
Sbjct: 398 EERRAKLEQ 406
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 19/181 (10%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDE 80
P G +F+ N+N ++ LF K+G ++ C V KN YGFV E
Sbjct: 118 PDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQE 177
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNT----PTTKVFVGNLSDNTRAPEVRELFV 136
+I+ LN + L + + +T T +++ NL D+ ++ F
Sbjct: 178 SADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFS 237
Query: 137 PYGTVVECDIV-------RNYGFVHIDSPDINKCIKE-LNGMMVDGKPMKVQISTSRVRQ 188
YG V+ I+ + +GFV +P+ K KE +NGM++ K + V + + +
Sbjct: 238 QYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAER 297
Query: 189 R 189
+
Sbjct: 298 K 298
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++ E + +F K G + V ++ YG+V+ + + A+++L
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ +KP+++ S + P+ + VFV NL+D ++ELF +G ++ C +
Sbjct: 100 NHSLILDKPIRV--MWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKV 157
Query: 147 VRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
+N YGFV + I+ LN G+ + V
Sbjct: 158 AKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHV 198
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N+ + + F +G ++ C V + +GFVH E E
Sbjct: 91 PGLRKSGVGNIFIKNLEASIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
+ AI +NG ++N+ + + SR+ T ++V NL + ++EL
Sbjct: 151 AQHAINTMNGMLLNDHKVFVGHFKSRREREVELGARAMEFTNIYVKNLQADVDEQGLQEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G ++ ++R+ +GFV+ ++ + K + +NG V G+ + V + RV
Sbjct: 211 FSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYVGRAQKRV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 83/176 (47%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N+ + ++ LF ++GK++ V+++ +GFV+ E EE + A+ +N
Sbjct: 193 IYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAVVHMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ V+ + L + A R + ++V NL D+ ++R+
Sbjct: 253 GKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRMNRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F PYG + ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F YG + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV KPL + A ++ T ++ LS
Sbjct: 356 RIVGTKPLYVALAQRKEERKAILTNQYMQRLS 387
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
G IFI N++ + + F +G ++ C VV K YGFVH E E AI+
Sbjct: 101 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 160
Query: 88 ELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRELFVPYGT 140
++NG ++N++ + + SRK T V++ N ++ +++LF +G
Sbjct: 161 KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGP 220
Query: 141 VVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
+ ++ + +GFV + D K + E+NG ++GK + V + +V ++
Sbjct: 221 ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 277
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 197 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 256
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 257 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 316
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 317 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 372
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 300 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 359
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 360 RIVATKPLYVALAQRKE 376
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 86/177 (48%), Gaps = 21/177 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ N +G A+++L
Sbjct: 53 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 112
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 113 NYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 170
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
++ YGFVH ++ + N IK +NGM+++ K + V S+ ++ DE+
Sbjct: 171 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEM 227
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 26/160 (16%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 122 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 181
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T +++ N+
Sbjct: 182 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDP 241
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDS 157
+ E R++F +G + + R+ +GFV+ +
Sbjct: 242 DVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYST 281
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I+I N++P + E R +FE++G++ + ++ +GFV+ E + A+ E++
Sbjct: 234 IYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMH 293
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ V + L + EAA K ++V NL+D+ ++RE
Sbjct: 294 DKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRE 353
Query: 134 LFVPYGTVVECDIVRN 149
LF PYGT+ ++R+
Sbjct: 354 LFGPYGTITSAKVMRD 369
>gi|195383760|ref|XP_002050594.1| GJ22239 [Drosophila virilis]
gi|194145391|gb|EDW61787.1| GJ22239 [Drosophila virilis]
Length = 301
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 18/140 (12%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKEL 89
KI+I N+ + + F +G ++ C+V K+ YGFVH +++E R AI+++
Sbjct: 108 KIYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKV 167
Query: 90 NGQIVNEKPLKIEAATSRKG----PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
NG + N + + + R+ T ++V NLS+ +RE+F PYG +
Sbjct: 168 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 227
Query: 146 IV-------RNYGFVHIDSP 158
++ R +GFV ++P
Sbjct: 228 LMLDEEGRSRRFGFVAFENP 247
Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKEL 167
K+++ NL + V E F +G ++ C++ R YGFVH DS + + I+++
Sbjct: 108 KIYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKV 167
Query: 168 NGMMVDGKPMKV 179
NGM+ + + + V
Sbjct: 168 NGMLCNNQKVHV 179
>gi|296087572|emb|CBI34828.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ E + LF++ G V E D + +GF+ M EE A++
Sbjct: 94 KLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAVEM 153
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N +N + L + A R + P P+ +++VGNL + ++F +G V
Sbjct: 154 FNRYDLNGRFLTVNKAAPRGSRPERPPQAFEPSFRIYVGNLPWQVDDARLEQVFSEHGKV 213
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
V+ +V R +GFV + S ++N I L+G +DG+ ++V ++ R R+
Sbjct: 214 VDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVNVAEERPRR 269
Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
+F+I++GN+ + +F ++GKVV+ VV + +GFV M ++ E AI
Sbjct: 186 SFRIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAI 245
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ ++ + +++ A R
Sbjct: 246 AALDGQSLDGRAIRVNVAEER 266
>gi|115461392|ref|NP_001054296.1| Os04g0682400 [Oryza sativa Japonica Group]
gi|113565867|dbj|BAF16210.1| Os04g0682400 [Oryza sativa Japonica Group]
Length = 1008
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 25/178 (14%)
Query: 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEE 81
V +++GN+ + LF +G++V VV + YGFV +
Sbjct: 287 LKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRC 346
Query: 82 GRTAIKELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
AIK +NG++V LK+ E + + T K++V NLS + +
Sbjct: 347 ASEAIKRMNGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIH 406
Query: 134 LFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
LF+P+G V + ++ YGFV SP + + LNG +VDG+ ++V++S
Sbjct: 407 LFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVS 464
Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+++ N+ + + LF +GK+ VV K YGF+ + E AI +
Sbjct: 503 LYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAM 562
Query: 90 NGQIVNEKPLKIEAA---------TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
NG +V + + + A + + +++++ NL + A ++ LF P+G
Sbjct: 563 NGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQ 622
Query: 141 VVECDIVRNYGFV-HIDSPDINKCIKELNGMMVDGKPMKVQIS 182
+ + + Y V + D+P K ++ ++G MV+GK + V+ S
Sbjct: 623 ITKVLMNLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRS 665
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 43/189 (22%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+++ N++ + + + LF +G+V V K+ YGFV + A+
Sbjct: 389 KLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIH 448
Query: 89 LNGQIVNEKPLKIEA---------------ATSR----KGPNTPTT-------KVFVGNL 122
LNG++V+ + +++ +T+R + P+T T ++V N+
Sbjct: 449 LNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNM 508
Query: 123 SDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVD 173
+ ++ ELF+P+G + +V + YGF+ DS K I +NG +V
Sbjct: 509 PSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVG 568
Query: 174 GKPMKVQIS 182
G+ + V+++
Sbjct: 569 GEMIIVRVA 577
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
+++I N+ + + + LF +G++ + + Y V + A++ ++G +V
Sbjct: 598 RLYITNLPRSMTADKMVNLFAPFGQITKVLMNLEYSLVWYADAPSATKAVQHMDGYMVEG 657
Query: 97 KPLKIE-----AATSRKGPNTPTTKV-----FVGNLSDNTRAPEVRELFVPYGTVVECDI 146
K L ++ + + P ++ +VG + + + +LF P+G VV+ +
Sbjct: 658 KRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARM 717
Query: 147 VR--NYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQIS 182
R YG V D+P I L+G + G + V+++
Sbjct: 718 FRFQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVA 756
Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--NYGFVHMENDEEGRTAIKELNGQIVN 95
+++G V + + LF +G+VV+ + + YG V +N AI L+G +
Sbjct: 688 LYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVRFDNPSCAAAAIDHLDGYQIG 747
Query: 96 EKPLKIEAA-------------TSRKGPNTP----TTKVFVGNLSDNTRAPEVRELFVPY 138
L + A TS+ N T ++V +L + +LF+P
Sbjct: 748 GSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPC 807
Query: 139 GTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQIS 182
G + + +V + +GFV D+ + +NG +DG ++V+I+
Sbjct: 808 GQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIA 860
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 92/200 (46%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ S E LF +GK+ + K+ +GFV+ E+ E A++ELN
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELN 294
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ +N + + + EA K +FV NL D + ++ E
Sbjct: 295 DKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEE 354
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV +P + K I E+N M++GKP+ V ++ +
Sbjct: 355 EFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRK 414
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R +++ + + + +Q
Sbjct: 415 DVRRSQLEQQIQARNQMRMQ 434
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N++P + + F +GK++ C V K +
Sbjct: 123 CRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCF 182
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AI+ +NG ++N++ + + S+K + T ++V N+
Sbjct: 183 GFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDL 242
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELNGMMVDGKP 176
N +LF P+G + + ++ +GFV+ D K ++ELN ++G+
Sbjct: 243 NYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQK 302
Query: 177 MKV 179
+ V
Sbjct: 303 IYV 305
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 20/135 (14%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G +NP + + +F G+V V ++ Y +V+ E+G AI+EL
Sbjct: 54 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEEL 113
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N + +P +I S++ P+ + +F+ NL + + F +G ++ C +
Sbjct: 114 NYNPIEGRPCRI--MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKV 171
Query: 147 VRN-------YGFVH 154
+ +GFVH
Sbjct: 172 ATDEFGQSKCFGFVH 186
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ F KYGK + V+ K +GFV E E+ A+ ++N
Sbjct: 199 VYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMN 258
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ VN +K ++ +A R+ ++ ++ NL D ++R+
Sbjct: 259 GKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 318
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 319 EFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 378
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + + G +++P L
Sbjct: 379 ERKAHLTNQYMQRIAGMRALPANTL 403
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E +
Sbjct: 97 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 156
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + R+ T V++ N ++ ++E
Sbjct: 157 ADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKET 216
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F YG + ++ + +GFV + D NK + ++NG V+GK M V + +V
Sbjct: 217 FSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKV 276
Query: 187 RQR 189
++
Sbjct: 277 ERQ 279
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
RF+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 285 RFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 326
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 327 TSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 378
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ S E LF YGK+ + K+ +GFV+ EN + A++ELN
Sbjct: 234 IYVKNIDLNYSEESFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFENHDSAVKAVEELN 293
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ +N + + + EAA K +FV NL D + ++ E
Sbjct: 294 DKEINGQKIYVGRAQKKRERLEELKKQYEAARLEKLAKYQGVNLFVKNLDDAIDSEKLEE 353
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F +GT+ ++ + +GFV +P + K I E+N M++GKP+ V ++ +
Sbjct: 354 EFKSFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRK 413
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R +++ + + + +Q
Sbjct: 414 DVRRSQLEQQIQARNQMRMQ 433
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N++P + + F +GK++ C V K +
Sbjct: 122 CRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVAADEFGQSKCF 181
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AI+ +NG ++N++ + + S+K + T ++V N+
Sbjct: 182 GFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDL 241
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKP 176
N +LF PYG + + ++ +GFV+ ++ D K ++ELN ++G+
Sbjct: 242 NYSEESFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFENHDSAVKAVEELNDKEINGQK 301
Query: 177 MKV 179
+ V
Sbjct: 302 IYV 304
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 20/135 (14%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G +NP + + +F G+V V ++ Y +V+ E+G AI+EL
Sbjct: 53 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEEL 112
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N + +P +I S++ P+ + +F+ NL + + F +G ++ C +
Sbjct: 113 NYTPIEGRPCRI--MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKV 170
Query: 147 VRN-------YGFVH 154
+ +GFVH
Sbjct: 171 AADEFGQSKCFGFVH 185
>gi|38345560|emb|CAE03434.2| OSJNBa0032F06.17 [Oryza sativa Japonica Group]
Length = 924
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 25/178 (14%)
Query: 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEE 81
V +++GN+ + LF +G++V VV + YGFV +
Sbjct: 203 LKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRC 262
Query: 82 GRTAIKELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
AIK +NG++V LK+ E + + T K++V NLS + +
Sbjct: 263 ASEAIKRMNGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIH 322
Query: 134 LFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
LF+P+G V + ++ YGFV SP + + LNG +VDG+ ++V++S
Sbjct: 323 LFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVS 380
Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+++ N+ + + LF +GK+ VV K YGF+ + E AI +
Sbjct: 419 LYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAM 478
Query: 90 NGQIVNEKPLKIEAA---------TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
NG +V + + + A + + +++++ NL + A ++ LF P+G
Sbjct: 479 NGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQ 538
Query: 141 VVECDIVRNYGFV-HIDSPDINKCIKELNGMMVDGKPMKVQIS 182
+ + + Y V + D+P K ++ ++G MV+GK + V+ S
Sbjct: 539 ITKVLMNLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRS 581
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 43/189 (22%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+++ N++ + + + LF +G+V V K+ YGFV + A+
Sbjct: 305 KLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIH 364
Query: 89 LNGQIVNEKPLKIEA---------------ATSR----KGPNTPTT-------KVFVGNL 122
LNG++V+ + +++ +T+R + P+T T ++V N+
Sbjct: 365 LNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNM 424
Query: 123 SDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVD 173
+ ++ ELF+P+G + +V + YGF+ DS K I +NG +V
Sbjct: 425 PSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVG 484
Query: 174 GKPMKVQIS 182
G+ + V+++
Sbjct: 485 GEMIIVRVA 493
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
+++I N+ + + + LF +G++ + + Y V + A++ ++G +V
Sbjct: 514 RLYITNLPRSMTADKMVNLFAPFGQITKVLMNLEYSLVWYADAPSATKAVQHMDGYMVEG 573
Query: 97 KPLKIE-----AATSRKGPNTPTTKV-----FVGNLSDNTRAPEVRELFVPYGTVVECDI 146
K L ++ + + P ++ +VG + + + +LF P+G VV+ +
Sbjct: 574 KRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARM 633
Query: 147 VR--NYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQIS 182
R YG V D+P I L+G + G + V+++
Sbjct: 634 FRFQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVA 672
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--NYGFVHMENDEEGRTAIKELNGQIVN 95
+++G V + + LF +G+VV+ + + YG V +N AI L+G +
Sbjct: 604 LYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVRFDNPSCAAAAIDHLDGYQIG 663
Query: 96 EKPLKIEAA-------------TSRKGPNTP----TTKVFVGNLSDNTRAPEVRELFVPY 138
L + A TS+ N T ++V +L + +LF+P
Sbjct: 664 GSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPC 723
Query: 139 GTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQIS 182
G + + +V + +GFV D+ + +NG +DG ++V+I+
Sbjct: 724 GQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIA 776
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 18/166 (10%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P GT IF+ N++ + + F +G ++ C V KNYGFVH E++E
Sbjct: 96 PSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEE 155
Query: 81 EGRTAIKELNGQIVNEKPLKIE---AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVP 137
+ AI+++NG + K + + + R +T T ++V N D +++LF P
Sbjct: 156 SAKEAIEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKQLFSP 215
Query: 138 YGTVVECDIV-----RNYGFV-HIDSPDINKCIKELNGMMV--DGK 175
YG + + R + F+ + D+ ++ LNG + DGK
Sbjct: 216 YGEITSMIVKSDNKNRKFCFINYSDADSARNAMENLNGKKITEDGK 261
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCI 164
P +++ NL D+ ++ELF PYGT+ ++++ +GFV + + NK +
Sbjct: 408 PGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAV 467
Query: 165 KELNGMMVDGKPMKVQIST------SRVRQR 189
E++ +++GKP+ V ++ SR++QR
Sbjct: 468 TEMHLKIINGKPLYVGLAEKREQRLSRLQQR 498
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 20 INISCRN-MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------Y 71
+N RN PG + ++I N++ + + ++ LFE YG + V+K+ +
Sbjct: 399 LNTESRNKHPGVN------LYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGF 452
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
GFV EE A+ E++ +I+N KPL + A R+
Sbjct: 453 GFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKRE 489
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------VGNLSDNTRAPEVRE 133
G+ +N K + + A + T + F V NL D+ +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 84/166 (50%), Gaps = 20/166 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFVHMEND 79
P S T +++G+++P + ++ F G ++ V + NY +V+ ++
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHP 62
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
++ A+ +N ++ KPL+I S++ P+ + +FV NL + + +
Sbjct: 63 KDAEHALDTMNFDVIKGKPLRI--MWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVS 120
Query: 137 PYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
+G ++ C++V + YGFVH ++ + + I+++NGM+++G+
Sbjct: 121 AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNGR 166
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 31/188 (16%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + + + +G ++ C+VV K YGFVH E E
Sbjct: 91 PSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAP 129
AI+++NG ++N + + + SRK PN V++ N ++
Sbjct: 151 AERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-----VYIKNFGEDMDDE 205
Query: 130 EVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQI 181
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 206 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 265
Query: 182 STSRVRQR 189
+ +V ++
Sbjct: 266 AQKKVERQ 273
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSD-----NTRAP 129
+IV KPL + A ++ T ++ ++ N RAP
Sbjct: 356 RIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAP 398
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 25/179 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P S L+ +F G V V ++ Y +V+ + E GRTAI++L
Sbjct: 52 LYVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFNDHESGRTAIEKL 111
Query: 90 NGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
N + KP +I + A +KG +F+ NL + + + F +G ++ C
Sbjct: 112 NYSPIKGKPCRIMWSQRDPALRKKGAGN----IFIKNLHPDIDNKALHDTFSVFGNILSC 167
Query: 145 DIV-------RNYGFVHIDSPDIN-KCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
I + +GFVH + + + + +NGMM++G+ + V S+ + ++EV
Sbjct: 168 KIATDETGKSKGFGFVHFEEDNAAVEAVDAINGMMLNGREVYVAQHVSKKDRESKLEEV 226
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N++P + + F +G ++ C + K +
Sbjct: 121 CRIMWSQRDPALRKKGAGNIFIKNLHPDIDNKALHDTFSVFGNILSCKIATDETGKSKGF 180
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E D A+ +NG ++N + + + S+K + T V+V N+
Sbjct: 181 GFVHFEEDNAAVEAVDAINGMMLNGREVYVAQHVSKKDRESKLEEVKANFTNVYVKNVDV 240
Query: 125 NTRAPEVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGKP 176
+T E LF YG + + R +GF++ ++ D K ++ELN + G+
Sbjct: 241 DTPEDEFTALFSKYGPITSIAMEKDSEGKFRGFGFINFENHDDAAKAVEELNDLEFKGQK 300
Query: 177 MKV 179
+ V
Sbjct: 301 LYV 303
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ NV+ T + LF KYG + + K+ +GF++ EN ++ A++ELN
Sbjct: 233 VYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDSEGKFRGFGFINFENHDDAAKAVEELN 292
Query: 91 -----GQIV------------NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E + EA+ K +FV NL D+ ++
Sbjct: 293 DLEFKGQKLYVGRAQKKYERLQELKKQYEASRLEKLAKYQGVNLFVKNLDDSIDDEKLEA 352
Query: 134 LFVPYGTVVECDIVR-------NYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+G++ ++R N+GFV +P + K I E N +V GKP+ V I+ +
Sbjct: 353 EFAPFGSITSAKVMRNEEGKSKNFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 412
Query: 186 VRQR 189
+R
Sbjct: 413 DVRR 416
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 51/184 (27%), Positives = 76/184 (41%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 126 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 185
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + + ++K + T V+V NL
Sbjct: 186 GFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDT 245
Query: 125 NTRAPEVRELFVPYGTVVECDIV--------RNYGFVH-IDSPDINKCIKELNGMMVDGK 175
E RELF YG + I R +GFV+ + ++ELN G+
Sbjct: 246 KVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQ 305
Query: 176 PMKV 179
+ V
Sbjct: 306 KLYV 309
Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 80/171 (46%), Gaps = 21/171 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEND 79
P + + +++G ++ + ++ LF G+V V ++ Y +V+ N
Sbjct: 47 PSTTQPHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFV 136
+G A+++LN ++ KP +I S++ P T VF+ NL + + F
Sbjct: 107 ADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFA 164
Query: 137 PYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
+G ++ C + ++ YGFVH ++ + IK +NGM+++ K + V
Sbjct: 165 AFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV 215
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 25/137 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+++ N++ + E R LF KYG + + + +GFV+ E A++EL
Sbjct: 238 VYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEEL 297
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N + + L + EAA K ++V NL+D+ ++R
Sbjct: 298 NDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLR 357
Query: 133 ELFVPYGTVVECDIVRN 149
+LF+ +G + ++R+
Sbjct: 358 DLFIGFGNITSARVMRD 374
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + I F +G ++ C V K YGFVH E +E
Sbjct: 82 PSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEE 141
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
T+I ++NG ++N K + + RK T V+V N +++ +++E
Sbjct: 142 AANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKE 201
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGM-MVDGKPMKV 179
F PYG + ++ + +GFV ++ + + ++ LNG M +GK + V
Sbjct: 202 FFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYV 256
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 33/181 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N E ++ FE YGK+ V+ K +GFV E E A++ LN
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Query: 91 GQIVNE-KPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G+ + E K L K E ++ + ++V NL D +R
Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 304
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSPDINKC-IKELNGMMVDGKPMKVQISTS 184
F PYG + ++ + +GFV ++ C + ELNG +V KP+ V ++
Sbjct: 305 IAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQR 364
Query: 185 R 185
+
Sbjct: 365 K 365
Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRT 84
SV +++ N++ + +R F YG + V+ K +GFV E
Sbjct: 283 SVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATC 342
Query: 85 AIKELNGQIVNEKPLKIEAATSRK 108
A+ ELNG++V KPL + A ++
Sbjct: 343 AVTELNGRVVGSKPLYVALAQRKE 366
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 51/184 (27%), Positives = 76/184 (41%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 126 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 185
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + + ++K + T V+V NL
Sbjct: 186 GFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDT 245
Query: 125 NTRAPEVRELFVPYGTVVECDIV--------RNYGFVH-IDSPDINKCIKELNGMMVDGK 175
E RELF YG + I R +GFV+ + ++ELN G+
Sbjct: 246 EVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQ 305
Query: 176 PMKV 179
+ V
Sbjct: 306 KLYV 309
Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 80/171 (46%), Gaps = 21/171 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEND 79
P + + +++G ++ + ++ LF G+V V ++ Y +V+ N
Sbjct: 47 PSTTQPHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFV 136
+G A+++LN ++ KP +I S++ P T VF+ NL + + F
Sbjct: 107 ADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFA 164
Query: 137 PYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
+G ++ C + ++ YGFVH ++ + IK +NGM+++ K + V
Sbjct: 165 AFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV 215
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 25/137 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+++ N++ + E R LF KYG + + + +GFV+ E A++EL
Sbjct: 238 VYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEEL 297
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N + + L + EAA K ++V NL+D+ ++R
Sbjct: 298 NDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLR 357
Query: 133 ELFVPYGTVVECDIVRN 149
+LF+ +G + ++R+
Sbjct: 358 DLFIGFGNITSARVMRD 374
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 28/172 (16%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K +GFV E++E
Sbjct: 104 PSARKSGAANVFIKNLDKAIDHKALYDTFSAFGNILSCKVATDASGQSKGHGFVQFESEE 163
Query: 81 EGRTAIKELNGQIVNEKPLKI---------EAATSRKGPNTPTTKVFVGNLSDNTRAPEV 131
+ AI +LNG ++N+K + + E+A S T VFV NL D+ ++
Sbjct: 164 SAQNAIDKLNGMLINDKQVFVGPFLRKQDRESALS----GTKFNNVFVKNLLDSMTEADL 219
Query: 132 RELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELNGMMVDGK 175
+F YG + ++R+ +GFV+ + D K ++ LNG DGK
Sbjct: 220 ERIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKAVEALNGKNFDGK 271
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N+ + + +F +YG + V+ K +GFV+ N ++ A++ LN
Sbjct: 205 VFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKAVEALN 264
Query: 91 GQIVNEKPLKIEAATSR-------KGPNTPTTK----------VFVGNLSDNTRAPEVRE 133
G+ + K + A + KG + TK +++ NL D+ E+ E
Sbjct: 265 GKNFDGKEWYVGKAQKKSERELELKGQHEQITKETVDKYHGTNLYIKNLDDSVGDEELME 324
Query: 134 LFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSR 185
LF +GT+ C ++R+ GFV + + + E+NG MV GKP+ V ++ +
Sbjct: 325 LFSEFGTITSCKVMRDPNGISRGSGFVSFSIAEGATRALGEMNGKMVAGKPLYVALAQRK 384
Query: 186 VRQR 189
+R
Sbjct: 385 EDRR 388
Score = 40.0 bits (92), Expect = 0.66, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 94 VNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---- 149
V E P I+AA S P+ T ++VG+L + P++ +LF VV I R+
Sbjct: 4 VLENP-TIDAAASGANPSLTTISLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQ 62
Query: 150 ----YGFVHI-DSPDINKCIKELNGMMVDGKPMKVQIS 182
YG+V+ ++ D K I LN ++GK +++ S
Sbjct: 63 QSLGYGYVNFSNAHDAAKAIDVLNFTPLNGKIIRIMYS 100
>gi|50294199|ref|XP_449511.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528825|emb|CAG62487.1| unnamed protein product [Candida glabrata]
Length = 513
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 29/190 (15%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+FIG +N T+ + +R F KYG VVE ++K+ +GF+ + +K
Sbjct: 131 KMFIGGLNWETTEDGLREYFSKYGNVVELKIMKDPNTGRSRGFGFLSFDAPSSVDEVVKT 190
Query: 89 ---LNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
L+G++++ K + G K+FVG L + R E E F +GT+++
Sbjct: 191 QHILDGKVIDPKRAIPREEQDKTG------KIFVGGLGTDVRPKEFEEYFSQWGTIIDAQ 244
Query: 146 IV--------RNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVI 197
++ R +GFV DSPD + + E GK ++++ + R +Q+ + V
Sbjct: 245 LMLDKDTGRSRGFGFVTYDSPDAAEKVCESRYREFKGKQIEIKRAEPRHQQKQAGQQAV- 303
Query: 198 GQKSVPVQAL 207
S PV +
Sbjct: 304 ---SPPVAGM 310
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ F KYGK + V+ K +GFV E E+ A+ ++N
Sbjct: 193 VYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ VN +K ++ +A R+ ++ ++ NL D ++R+
Sbjct: 253 GKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + + G +++P L
Sbjct: 373 ERKAHLTNQYMQRIAGMRALPANTL 397
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + R+ T V++ N ++ ++E
Sbjct: 151 ADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKET 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F YG + ++ + +GFV + D NK + ++NG V+GK M V + +V
Sbjct: 211 FSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
RF+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 RFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
>gi|47086749|ref|NP_997810.1| heterogeneous nuclear ribonucleoprotein A0 [Danio rerio]
gi|44890516|gb|AAH66672.1| Zgc:77366 [Danio rerio]
Length = 305
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 86/170 (50%), Gaps = 22/170 (12%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+F+G +N T+ + +R FE+YGK+ +C VV+N +GFV + +E +A+
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAM-S 69
Query: 89 LNGQIVNEKPLKIEAATSRKGPNTPTT-----KVFVGNLSDNTRAPEVRELFVPYGTVVE 143
I++ ++++ A +R+ P K+F+G L D+ +R+ F +G V +
Sbjct: 70 ARPHILDGNNVELKRAVAREDAGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVEK 129
Query: 144 CDIV--------RNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+++ R +GFV+ + D L M++G ++V+ + ++
Sbjct: 130 AEVITDKETGKKRGFGFVYFEDNDSADKAVVLKFHMINGHKVEVKKALTK 179
Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPDINKCIKEL 167
K+FVG L+ T +R F YG + +C +V+N +GFV SPD
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 168 NGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKSVPVQAL 207
++DG V++ + R+ G E + K + + L
Sbjct: 71 RPHILDGN--NVELKRAVAREDAGKPEALAKVKKIFIGGL 108
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 90/185 (48%), Gaps = 33/185 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ T+ + ++ +FE++G++ V+K+ +GFV+ E E TAI ++N
Sbjct: 121 VYVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRMFGFVNFEKAEAAVTAIDKMN 180
Query: 91 GQIVNEKPLKIEAATSRKG------------------PNTPTTKVFVGNLSDNTRAPEVR 132
G IV+EK L + A +K T ++V NL + +++
Sbjct: 181 GTIVDEKELHVGRAQRKKNRIQDLKVIFKLEKIKRDMKTRKGTNLYVKNLDYSVDNTKLQ 240
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTS 184
ELF +GT++ C ++ + GFV S + +K + ++NG +V KP+ V ++
Sbjct: 241 ELFSEFGTIISCKVMVHPNRISKGVGFVEFSTSEEASKAMLKMNGKVVGNKPIYVSLAQC 300
Query: 185 RVRQR 189
+ +
Sbjct: 301 KEEHK 305
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 75/159 (47%), Gaps = 17/159 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N++ + + +F +GKV+ C VV K YGFV ++ A N
Sbjct: 33 VFVKNLDESIDNKQLSDMFSAFGKVLSCKVVRDASGVSKGYGFVQFYSELSVNIACNVRN 92
Query: 91 GQIVNEKPLKIEAATSRKGPNTPT--TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
G ++ + + + SR+ + T V+V NL++ T +++ +F +G + ++
Sbjct: 93 GTLIRNQHIHVSPFVSRRQWDESRVFTNVYVKNLAETTTDDDLKMIFEEFGEITSAVVMK 152
Query: 148 ------RNYGFVHIDSPDIN-KCIKELNGMMVDGKPMKV 179
R +GFV+ + + I ++NG +VD K + V
Sbjct: 153 DKEGKSRMFGFVNFEKAEAAVTAIDKMNGTIVDEKELHV 191
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 19/147 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C + K YGFV EN+E
Sbjct: 104 PSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEE 163
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKG-----PNTPTTKVFVGNLSDNTRAPEVRELF 135
++AI +LNG ++N+KP+ + ++ N V+V NLS++ +++ F
Sbjct: 164 SAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTF 223
Query: 136 VPYGTVVECDIVRN-------YGFVHI 155
YGT+ ++R+ +GFV+
Sbjct: 224 GEYGTITSAVVMRDVDGKSKCFGFVNF 250
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 21/164 (12%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G+++ + + LF + G+VV + ++ YG+V+ N + A+
Sbjct: 23 TTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAM 82
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
LN +N KP++I S + P+ + +F+ NL + + F +G ++
Sbjct: 83 DVLNFTPLNNKPIRI--MYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILS 140
Query: 144 CDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
C I + YGFV ++ + I +LNGM+++ KP+ V
Sbjct: 141 CKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYV 184
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 84/174 (48%), Gaps = 32/174 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ + + ++ F +YG + V+++ +GFV+ EN + A++ LN
Sbjct: 205 VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALN 264
Query: 91 GQIVNEKPLKIEAATSR-------KGPNTPTTK----------VFVGNLSDNTRAPEVRE 133
G+ ++K + A + K + + K +++ NL D+ ++ E
Sbjct: 265 GKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSE 324
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
LF +GTV C I+R+ GFV +P + + + E+NG MV GKP+ V
Sbjct: 325 LFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYV 378
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ + E + LF ++G V C ++++ GFV EE A+ E+N
Sbjct: 308 LYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMN 367
Query: 91 GQIVNEKPLKIEAATSRK 108
G++V KPL + A ++
Sbjct: 368 GKMVAGKPLYVAPAQKKE 385
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++EL
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
F YG + ++ + +GFV + D K + ++NG ++G+ + V
Sbjct: 211 FGNYGPALSVRVMTDDTGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYV 263
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAI---- 86
++I N E ++ LF YG + V+ K +GFV E E+ + A+
Sbjct: 193 VYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDDTGKSKGFGFVSFERHEDAQKAVDDMN 252
Query: 87 -KELNGQIV------------NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
KELNG+ V NE K E + ++V NL D +R+
Sbjct: 253 GKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 43.5 bits (101), Expect = 0.055, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|195029531|ref|XP_001987626.1| GH22019 [Drosophila grimshawi]
gi|193903626|gb|EDW02493.1| GH22019 [Drosophila grimshawi]
Length = 304
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 18/140 (12%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKEL 89
KI+I N+ + + F +G ++ C+V K+ YGFVH +++E R AI+++
Sbjct: 111 KIYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKV 170
Query: 90 NGQIVNEKPLKIEAATSRKG----PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
NG + N + + + R+ T ++V NLS+ +RE+F PYG +
Sbjct: 171 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 230
Query: 146 IV-------RNYGFVHIDSP 158
++ R +GFV ++P
Sbjct: 231 LMLDEEGRSRRFGFVAFENP 250
Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKEL 167
K+++ NL + V E F +G ++ C++ R YGFVH DS + + I+++
Sbjct: 111 KIYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKV 170
Query: 168 NGMMVDGKPMKV 179
NGM+ + + + V
Sbjct: 171 NGMLCNNQKVHV 182
>gi|443724663|gb|ELU12567.1| hypothetical protein CAPTEDRAFT_224043 [Capitella teleta]
Length = 454
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 46/66 (69%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN++P S + +R LFE +G+VVE DV+ +GFVHM N+E+ + AI LNG V
Sbjct: 4 KVFVGNLSPDCSNDKLRELFEPFGEVVEHDVLSGFGFVHMANEEDAKNAITGLNGTNVLG 63
Query: 97 KPLKIE 102
+ + +E
Sbjct: 64 RHISVE 69
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMM 171
PT K+F+GN+++ T +V++LF +G VVE D++ +GFVH+ S D I LNG M
Sbjct: 172 PTVKIFIGNIAEGTVTADVQQLFADFGEVVEADVLTGFGFVHMRSEEDAEAAIAALNGFM 231
Query: 172 VDGKPMKVQISTSRVRQ 188
++G P+ V++ST RQ
Sbjct: 232 LNGSPINVEMSTGINRQ 248
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 173
TKVFVGNLS + ++RELF P+G VVE D++ +GFVH+ + D I LNG V
Sbjct: 3 TKVFVGNLSPDCSNDKLRELFEPFGEVVEHDVLSGFGFVHMANEEDAKNAITGLNGTNVL 62
Query: 174 GKPMKVQIS 182
G+ + V+IS
Sbjct: 63 GRHISVEIS 71
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
T KIFIGN+ GT ++ LF +G+VVE DV+ +GFVHM ++E+ AI LNG ++
Sbjct: 173 TVKIFIGNIAEGTVTADVQQLFADFGEVVEADVLTGFGFVHMRSEEDAEAAIAALNGFML 232
Query: 95 NEKPLKIEAAT 105
N P+ +E +T
Sbjct: 233 NGSPINVEMST 243
>gi|355709043|gb|AES03462.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 230
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 21/163 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 65 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 124
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 125 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 184
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNG 169
F +G + ++ + +GFV + D K + E+NG
Sbjct: 185 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 227
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 132 CRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDESGASKGY 191
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T ++V N+
Sbjct: 192 GFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPV 251
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGK 175
E RELF +G V + R+ +GFV+ I+ + ELNG G+
Sbjct: 252 EATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAATAVDELNGKDFKGQ 311
Query: 176 PMKV 179
+ V
Sbjct: 312 DLYV 315
Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 25/137 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
I++ N+ + E R LFEK+G V + ++ +GFV+ N E TA+ EL
Sbjct: 244 IYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAATAVDEL 303
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
NG+ + L + EAA K ++V NL D+ ++R
Sbjct: 304 NGKDFKGQDLYVGRAQKKHEREEELRRSYEAARIEKASKYQGVNLYVKNLDDDIDDEKLR 363
Query: 133 ELFVPYGTVVECDIVRN 149
ELF +G++ ++R+
Sbjct: 364 ELFQSFGSITSAKVMRD 380
>gi|427796855|gb|JAA63879.1| Putative glycine rich protein, partial [Rhipicephalus pulchellus]
Length = 249
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 10/108 (9%)
Query: 2 SRFDQQQLVKVSR--YSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKY 59
SR +Q L ++ +S Q++ + MP K+++G++ G V + LF KY
Sbjct: 4 SRVARQLLRGLTHCVFSFFQVSATSDTMP--------KLYVGSLPEGCDVASLEALFAKY 55
Query: 60 GKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
GKV ECD+VKNY FVHM ++EE + AI L+ + +EA+ S+
Sbjct: 56 GKVEECDIVKNYAFVHMNSEEESKLAIDALHNSEFMGGKITVEASHSK 103
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMVDG 174
K++VG+L + + LF YG V ECDIV+NY FVH++S + +K I L+ G
Sbjct: 33 KLYVGSLPEGCDVASLEALFAKYGKVEECDIVKNYAFVHMNSEEESKLAIDALHNSEFMG 92
Query: 175 KPMKVQISTSRVRQRPGV 192
+ V+ S S+VR +PG+
Sbjct: 93 GKITVEASHSKVRPKPGM 110
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 91/197 (46%), Gaps = 33/197 (16%)
Query: 25 RNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHME 77
R +PG+ + T ++I N++ + L++ F +GK++ + K+ + FV+ E
Sbjct: 181 RILPGYDAKYT-NLYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYE 239
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNT-----------------PTTKVFVG 120
N ++ R A++ +NG K L + A + + ++V
Sbjct: 240 NPDDARKAMEAMNGLKFGSKNLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVK 299
Query: 121 NLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMV 172
N+ D+ E+R+LF GT+ ++R+ +GFV +P + NK ++ NG M
Sbjct: 300 NIDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVRSFNGCMF 359
Query: 173 DGKPMKVQISTSRVRQR 189
KP+ + I+ ++ ++
Sbjct: 360 HRKPLYIAIAQRKMDRK 376
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +F+ N+ + LF+KYG ++ VV K YGFV E++E
Sbjct: 92 PSARKSGRGNVFVKNLAGSIDNAGLHDLFQKYGNILSSKVVMSGDGKSKGYGFVQFESEE 151
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVRELF 135
AI++LNG V +K + + + G + T +++ NL + ++E F
Sbjct: 152 SANNAIEKLNGSTVGDKQIYVGKFVRKGDRILPGYDAKYTNLYIKNLDSDITEALLQEKF 211
Query: 136 VPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
+G ++ I ++ + FV+ ++P D K ++ +NG+ K + V
Sbjct: 212 SSFGKIISLVISKDDNGLSKGFAFVNYENPDDARKAMEAMNGLKFGSKNLYV 263
Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ + + +R LF G + V+ K +GFV N EE A++ N
Sbjct: 296 LYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVRSFN 355
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS--DNTRAPEVRELFVPY 138
G + + KPL I A + T + + D + P + F PY
Sbjct: 356 GCMFHRKPLYIAIAQRKMDRKTQLNLHYAPQQTGLDGSSTPVIPGGFPPY 405
>gi|37681959|gb|AAQ97857.1| TIA1 cytotoxic granule-associated RNA binding protein [Danio rerio]
gi|160773363|gb|AAI55270.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
Length = 342
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 38/206 (18%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
F +F+G+++P S + +R F +GK+ + VV K YGF+ N + +AI+
Sbjct: 97 FHVFVGDLSPEISTDDVRAAFAPFGKISDARVVRDLATGKSKGYGFISFINKWDAESAIQ 156
Query: 88 ELNGQIVNEKPLKIEAATSRKGPNTPTTK------------------------VFVGNLS 123
++NGQ + + ++ AT + P+ P + V+ G ++
Sbjct: 157 QMNGQWLGGRQIRTNWATRK--PSAPKSNNEGASSKHLSYEEVLNQSSPSNCTVYCGGIA 214
Query: 124 DNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQ 180
+R+ F P+G ++E + + Y FV DS + I +NG ++G +K
Sbjct: 215 SGLSDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFDSHEGAAHAIVSVNGTCIEGHTVKCY 274
Query: 181 ISTSRVRQRPGVDEVVIGQKSVPVQA 206
R + ++ + Q++ P A
Sbjct: 275 WGKETADMR-SMQQMPMPQQNKPTYA 299
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 18/166 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEEGRTAIKELNG 91
+++GN++ + LI +F + G C ++ + Y FV + A+ +NG
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYCFVEFYENRHAAAALAAMNG 70
Query: 92 QIVNEKPLKIEAAT---SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+ + K +K+ A+ S+K + VFVG+LS +VR F P+G + + +VR
Sbjct: 71 RKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVR 130
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+ YGF+ I+ D I+++NG + G+ ++ +T +
Sbjct: 131 DLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRK 176
>gi|19922904|ref|NP_611924.1| CG4612, isoform A [Drosophila melanogaster]
gi|386768569|ref|NP_001246493.1| CG4612, isoform C [Drosophila melanogaster]
gi|195353161|ref|XP_002043074.1| GM11822 [Drosophila sechellia]
gi|195586434|ref|XP_002082979.1| GD24944 [Drosophila simulans]
gi|7291799|gb|AAF47219.1| CG4612, isoform A [Drosophila melanogaster]
gi|16648374|gb|AAL25452.1| LD36772p [Drosophila melanogaster]
gi|194127162|gb|EDW49205.1| GM11822 [Drosophila sechellia]
gi|194194988|gb|EDX08564.1| GD24944 [Drosophila simulans]
gi|220946122|gb|ACL85604.1| CG4612-PA [synthetic construct]
gi|220955844|gb|ACL90465.1| CG4612-PA [synthetic construct]
gi|383302680|gb|AFH08246.1| CG4612, isoform C [Drosophila melanogaster]
Length = 307
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 18/140 (12%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKEL 89
KI+I N+ + + F +G ++ C+V K+ YGFVH +++E R AI+++
Sbjct: 114 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 90 NGQIVNEKPLKIEAATSRKG----PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
NG + N + + + R+ T ++V NLS+ +RE+F PYG +
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 146 IV-------RNYGFVHIDSP 158
++ R +GFV ++P
Sbjct: 234 LMLDEEGRSRRFGFVAYENP 253
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKEL 167
K+++ NL + V + F +G ++ C++ R YGFVH DS + + I+++
Sbjct: 114 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 168 NGMMVDGKPMKV 179
NGM+ + + + V
Sbjct: 174 NGMLCNNQKVHV 185
>gi|225452270|ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 312
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ E + LF++ G V E D + +GF+ M EE A++
Sbjct: 134 KLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAVEM 193
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N +N + L + A R + P P+ +++VGNL + ++F +G V
Sbjct: 194 FNRYDLNGRFLTVNKAAPRGSRPERPPQAFEPSFRIYVGNLPWQVDDARLEQVFSEHGKV 253
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
V+ +V R +GFV + S ++N I L+G +DG+ ++V ++ R R+
Sbjct: 254 VDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVNVAEERPRR 309
Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
+F+I++GN+ + +F ++GKVV+ VV + +GFV M ++ E AI
Sbjct: 226 SFRIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAI 285
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ ++ + +++ A R
Sbjct: 286 AALDGQSLDGRAIRVNVAEER 306
>gi|356508744|ref|XP_003523114.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 305
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 32/181 (17%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ + + LFE+ G V E D + +GFV M EE A+++
Sbjct: 125 KLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAENAVEK 184
Query: 89 LNGQIVNEKPLKIEAATSR---------KGPNTPTTKVFVGNLS---DNTRAPEVRELFV 136
+ + + L + A+ R + P+ ++VGNL DNTR + ++F
Sbjct: 185 FSRYDFDGRLLTVNKASPRGTRPERPPPRHSFEPSLSIYVGNLPWDVDNTR---LEQIFS 241
Query: 137 PYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRVR 187
+G VV +V R +GFV + D ++ + L+G +DG+P++V ++ R R
Sbjct: 242 EHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKDAVAALDGQSLDGRPIRVSVAEDRPR 301
Query: 188 Q 188
+
Sbjct: 302 R 302
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 25 RNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHM 76
R P S + I++GN+ + +F ++G VV VV + +GFV M
Sbjct: 209 RPPPRHSFEPSLSIYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTM 268
Query: 77 ENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
++ E + A+ L+GQ ++ +P+++ A R
Sbjct: 269 SDETEMKDAVAALDGQSLDGRPIRVSVAEDR 299
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N+ ++ +F+KYG ++ VV K YGFV E++E AI++LN
Sbjct: 102 LFVKNLPESIDNAGLQDMFKKYGNILSSKVVMSEDGKSKGYGFVQFESEESSNVAIEKLN 161
Query: 91 GQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
G V +K L + + GP+ T +++ NL + ++E F +G +V
Sbjct: 162 GSTVGDKQLYVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSLV 221
Query: 146 IVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
I ++ +GFV+ D+P D + ++ +NG + K + V
Sbjct: 222 IAKDNIGMSKGFGFVNYDNPDDAKRAMEAMNGSKLGSKILYV 263
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 43/200 (21%)
Query: 23 SCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVH 75
S R +PG + T +++ N++ S ++ F +GK+V + K+ +GFV+
Sbjct: 179 SDRILPGPDARYT-NLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNIGMSKGFGFVN 237
Query: 76 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR----------------------KGPNTP 113
+N ++ + A++ +NG + K L + A + KG N
Sbjct: 238 YDNPDDAKRAMEAMNGSKLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSN-- 295
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIK 165
++V N+ D+ E+R+ F G + I+R+ +GFV +P + NK +
Sbjct: 296 ---IYVKNIDDHVSDEELRDHFSACGIITSAKIMRDDKGISKGFGFVCFSTPEEANKAVN 352
Query: 166 ELNGMMVDGKPMKVQISTSR 185
+G M GKP+ V ++ +
Sbjct: 353 TFHGFMFHGKPLYVALAQRK 372
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N+ + + F +G ++ C VV + +GFVH E E
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI +NG ++N++ + + SR+ T ++V NL + +++L
Sbjct: 151 AHQAIATMNGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQDL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G ++ ++R+ +GFV+ + + K + ++NG V G+ + V + RV
Sbjct: 211 FSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 85/176 (48%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ + ++ LF ++GK++ V+++ +GFV+ E EE + A+ ++N
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMN 252
Query: 91 GQIVNEKPLKIEAATSR-----------------KGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ V+ + L + A R + ++V NL D+ ++R+
Sbjct: 253 GKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F PYG + ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F YG + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV KPL + A ++ T ++ LS
Sbjct: 356 RIVGTKPLYVALAQRKEERKAILTNQYMQRLS 387
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 113 PSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFVHFETEE 172
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I+++NG ++N K + + RK T V+V N ++ +++E
Sbjct: 173 AANKSIEKVNGMLLNGKKVYVGKFIPRKERQKELGEKAKLFTNVYVKNFGEDMTDDKLKE 232
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGM-MVDGKPMKV 179
+F YGT+ ++ R +GFV + P+ + + +LNG + +GK M V
Sbjct: 233 MFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYV 287
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 42/185 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N + + ++ +FEKYG + V+ + +GFV E+ A+ +LN
Sbjct: 216 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLN 275
Query: 91 GQIVNE-----------------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTR 127
G+ + E + LKIE +G N ++V NL D
Sbjct: 276 GKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN-----LYVKNLDDTID 330
Query: 128 APEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+R+ F P+GT+ ++ + +GFV P + K + E+NG +V KP+ V
Sbjct: 331 DERLRKEFTPFGTITSAKVMMEEGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVA 390
Query: 181 ISTSR 185
++ +
Sbjct: 391 LAQRK 395
Score = 42.7 bits (99), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F +G + V+ K +GFV EE A+ E+NG
Sbjct: 320 LYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEEGRSKGFGFVCFSQPEEATKAVTEMNG 379
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
+IV KPL + A ++ ++ ++ N R ++ ++F
Sbjct: 380 RIVGSKPLYVALAQRKEDRKAHLASQYMQRMA-NMRMQQMGQIF 422
>gi|444318191|ref|XP_004179753.1| hypothetical protein TBLA_0C04360 [Tetrapisispora blattae CBS 6284]
gi|387512794|emb|CCH60234.1| hypothetical protein TBLA_0C04360 [Tetrapisispora blattae CBS 6284]
Length = 403
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 30/178 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G ++ E ++ FE G V+ V+ + YG+V +N AIKE+
Sbjct: 163 IFVGRLSWSIDDEWLKTEFEPIGGVLSARVIYEKGTDRSRGYGYVDFKNKTFAEKAIKEM 222
Query: 90 NGQIVNEKPLKIEAATSRKG-------------PNTPTTKVFVGNLSDNTRAPEVRELFV 136
G+ ++ +P+ + +TS+ P+ P+ +F+GNLS + + E+F
Sbjct: 223 QGKEIDGRPINCDMSTSKPASNGGDRAKKFGDTPSEPSETLFLGNLSFDADRDNIYEVFS 282
Query: 137 PYGTVV--------ECDIVRNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSR 185
YG ++ E + + +G+V D K + L G ++ +P+++ ST R
Sbjct: 283 KYGEIISVRIPTHPETEQPKGFGYVQYGDVESAKKALDALQGEYINNRPVRLDFSTPR 340
>gi|296424904|ref|XP_002841985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638239|emb|CAZ86176.1| unnamed protein product [Tuber melanosporum]
Length = 374
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 21/177 (11%)
Query: 18 NQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------- 70
N +++ + +S + +++G + P + ++ LF G V V ++
Sbjct: 35 NNSSVAAPHSAPHNSHTSASLYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSL 94
Query: 71 -YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNT 126
Y +V+ N +G A++ELN ++ +P +I S++ P T VF+ NL
Sbjct: 95 GYSYVNYNNTADGERALEELNYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDTAI 152
Query: 127 RAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDI-NKCIKELNGMMVDGK 175
+ + F +G ++ C + R YGFVH ++ + N IK +NGM+++ K
Sbjct: 153 DNKALHDTFAAFGNILSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEK 209
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 38/201 (18%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------Y 71
CR M P G +FI N++ + + F +G ++ C V ++ Y
Sbjct: 124 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFSNSRGY 183
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + + +K + T V+V N+
Sbjct: 184 GFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFDEMKANFTNVYVKNIDP 243
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELNGMMVDGKP 176
E R +F YG + + R+ +GFV+ + K ++EL+ + G+
Sbjct: 244 EVTDEEFRTMFENYGPITSASLSRDQDGVSRGFGFVNFQEHQHAAKAVEELHESELKGQT 303
Query: 177 M-----------KVQISTSRV 186
+ +V I TSR+
Sbjct: 304 LYPLELRKLASTRVSICTSRI 324
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N+ + + F +G ++ C VV + +GFVH E E
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI +NG ++N++ + + SR+ T ++V NL + +++L
Sbjct: 151 AHQAIATMNGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQDL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G ++ ++R+ +GFV+ + + K + ++NG V G+ + V + RV
Sbjct: 211 FSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 85/176 (48%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ + ++ LF ++GK++ V+++ +GFV+ E EE + A+ ++N
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMN 252
Query: 91 GQIVNEKPLKIEAATSR-----------------KGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ V+ + L + A R + ++V NL D+ ++R+
Sbjct: 253 GKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F PYG + ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F YG + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV KPL + A ++ T ++ LS
Sbjct: 356 RIVGTKPLYVALAQRKEERKAILTNQYMQRLS 387
>gi|195489681|ref|XP_002092839.1| GE11444 [Drosophila yakuba]
gi|194178940|gb|EDW92551.1| GE11444 [Drosophila yakuba]
Length = 307
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 18/140 (12%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKEL 89
KI+I N+ + + F +G ++ C+V K+ YGFVH +++E R AI+++
Sbjct: 114 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 90 NGQIVNEKPLKIEAATSRKG----PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
NG + N + + + R+ T ++V NLS+ +RE+F PYG +
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 146 IV-------RNYGFVHIDSP 158
++ R +GFV ++P
Sbjct: 234 LMLDEEGRSRRFGFVAYENP 253
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKEL 167
K+++ NL + V + F +G ++ C++ R YGFVH DS + + I+++
Sbjct: 114 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 168 NGMMVDGKPMKV 179
NGM+ + + + V
Sbjct: 174 NGMLCNNQKVHV 185
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 24/146 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I+I N++P E R LFEK+G++ + ++ +GFV+ E + A++E+N
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ V + L + EAA K ++V NL+D+ ++RE
Sbjct: 285 DKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRE 344
Query: 134 LFVPYGTVVECDIVRNYGFVHIDSPD 159
LF PYGT+ ++R+ V +P+
Sbjct: 345 LFGPYGTITSAKVMRDTAPVETATPE 370
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ + G A+ EL
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 104 NYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 161
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 162 AQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDK 198
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 113 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGY 172
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T +++ N+
Sbjct: 173 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDP 232
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 168
E R+LF +G + + R+ +GFV+ + + ++E+N
Sbjct: 233 EVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 19/147 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C + K YGFV EN+E
Sbjct: 104 PSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEE 163
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKG-----PNTPTTKVFVGNLSDNTRAPEVRELF 135
++AI +LNG ++N+KP+ + ++ N V+V NLS++ +++ F
Sbjct: 164 SAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTF 223
Query: 136 VPYGTVVECDIVRN-------YGFVHI 155
YGT+ ++R+ +GFV+
Sbjct: 224 GEYGTITSAVVMRDVDGKSKCFGFVNF 250
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 21/164 (12%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G+++ + + LF + G+VV + ++ YG+V+ N + A+
Sbjct: 23 TTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAM 82
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
LN +N KP++I S + P+ + +F+ NL + + F +G ++
Sbjct: 83 DVLNFTPLNNKPIRI--MYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILS 140
Query: 144 CDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
C I + YGFV ++ + I +LNGM+++ KP+ V
Sbjct: 141 CKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYV 184
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 84/174 (48%), Gaps = 32/174 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ + + ++ F +YG + V+++ +GFV+ EN + A++ LN
Sbjct: 205 VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALN 264
Query: 91 GQIVNEKPLKIEAATSR-------KGPNTPTTK----------VFVGNLSDNTRAPEVRE 133
G+ ++K + A + K + + K +++ NL D+ ++ E
Sbjct: 265 GKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSE 324
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
LF +GTV C I+R+ GFV +P + + + E+NG MV GKP+ V
Sbjct: 325 LFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYV 378
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ + E + LF ++G V C ++++ GFV EE A+ E+N
Sbjct: 308 LYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMN 367
Query: 91 GQIVNEKPLKIEAATSRK 108
G++V KPL + A ++
Sbjct: 368 GKMVAGKPLYVAPAQKKE 385
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
gi|222868100|gb|EEF05231.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 31/184 (16%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
K+F+GN+ + LFE G V +V+ + +GFV M EE A K
Sbjct: 90 LKLFVGNLPFNVDSARLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMTTIEEVEAASK 149
Query: 88 ELNGQIVNEKPLKI--------EAATSRKGPNTPTT-----KVFVGNLSDNTRAPEVREL 134
+ NG ++ + L++ E++ SR GP T +V+VGNLS N + L
Sbjct: 150 QFNGYELDGRTLRVNFGPPPQKESSFSR-GPRGGETFDSGNRVYVGNLSWNVDNLALETL 208
Query: 135 FVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F G V++ +V R +GFV S +++ I LNG +DG+ ++V ++ ++
Sbjct: 209 FREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNAIDSLNGAELDGRAIRVSVAEAK 268
Query: 186 VRQR 189
R++
Sbjct: 269 PRRQ 272
>gi|432884715|ref|XP_004074554.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Oryzias latipes]
Length = 386
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 35/201 (17%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK 87
F +F+G+++P + + I+ F +GK+ +C VVK+ YGFV N + AI+
Sbjct: 95 FHVFVGDLSPEITTDDIKAAFAPFGKISDCRVVKDMATGKSKGYGFVSFFNKWDAENAIQ 154
Query: 88 ELNGQIVNEKPLKIEAATSRKGPNT---------------------PTTKVFVGNLSDNT 126
++ GQ + + ++ AT + P T V+ G ++
Sbjct: 155 QMGGQWLGGRQIRTNWATRKPAPKTTNESSSSKQLSFDEVVNQSSPSNCTVYCGGVTTGL 214
Query: 127 RAPEVRELFVPYGTVVECDIV--RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQIS- 182
+R+ F P+G ++E + + Y FV +S + I +NG ++G +K
Sbjct: 215 TEQIMRQTFSPFGQIMEIRVFPEKGYSFVRFNSHEAAAHAIVSVNGTSIEGYVVKCYWGK 274
Query: 183 -TSRVRQRPGVDEVVIGQKSV 202
T+ + Q P + +V + Q+S
Sbjct: 275 ETTDMVQGP-IQQVPMAQQST 294
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 18/166 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEEGRTAIKELNG 91
+++GN++ + LI LF + G C ++ + Y FV I +NG
Sbjct: 9 LYVGNLSRDVTEALILELFGQIGPCKSCKMIVDTAGHDPYCFVEFYEHRHATATIAAMNG 68
Query: 92 QIVNEKPLKIEAAT---SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+ + K +K+ AT S+K + VFVG+LS +++ F P+G + +C +V+
Sbjct: 69 RKILGKEVKVNWATTPTSQKKDTSSHFHVFVGDLSPEITTDDIKAAFAPFGKISDCRVVK 128
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+ YGFV + D I+++ G + G+ ++ +T +
Sbjct: 129 DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 24/146 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I+I N++P E R LFEK+G++ + ++ +GFV+ E + A++E+N
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ V + L + EAA K ++V NL+D+ ++RE
Sbjct: 285 DKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRE 344
Query: 134 LFVPYGTVVECDIVRNYGFVHIDSPD 159
LF PYGT+ ++R+ V +P+
Sbjct: 345 LFGPYGTITSAKVMRDTAPVETATPE 370
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ + G A+ EL
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 104 NYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 161
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 162 AQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDK 198
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 113 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGY 172
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T +++ N+
Sbjct: 173 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDP 232
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 168
E R+LF +G + + R+ +GFV+ + + ++E+N
Sbjct: 233 EVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 27/182 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N++ + + F +G ++ C VV K Y
Sbjct: 81 CRIMWSHRDPSIRKSGQGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVTDGKGNSKGY 140
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT------TKVFVGNLSDN 125
GFVH E E +AI ++NG+++N K + + +RK TP T +++ NL +
Sbjct: 141 GFVHYETSEAADSAIAKVNGKMLNGKIVYVGRFIARK-ERTPGSDPEKFTNIYIKNLGEA 199
Query: 126 TRAPEVRELFVPYGTVVEC-------DIVRNYGFVHI-DSPDINKCIKELNGMMVDGKPM 177
+++ F +GTV DI R + FV+ D ++ +ELNG + K +
Sbjct: 200 YTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRATEELNGRKLGDKEV 259
Query: 178 KV 179
V
Sbjct: 260 YV 261
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 30/175 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVEC-------DVVKNYGFVHMENDEEGRTAIKELN 90
I+I N+ + E ++ F +G V D+ + + FV+ E+ E A +ELN
Sbjct: 191 IYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRATEELN 250
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-------------VFVGNLSDNTRAPEVRELF-- 135
G+ + +K + + A + + K +++ NL D E+ +LF
Sbjct: 251 GRKLGDKEVYVGRAQKKSERESFLRKLREERAQKYQGINLYIKNLDDTVNDEELHKLFSA 310
Query: 136 VPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
+P+G + C ++ R +GFV +P D +K + E+NG MV KP+ V ++
Sbjct: 311 LPFGQITSCKVMSDDKGNSRGFGFVCYTNPEDASKAVSEMNGKMVANKPIYVALA 365
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 87/186 (46%), Gaps = 21/186 (11%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEN 78
M S + +++G++NP + L+ +F+ G V V ++ Y +V+ N
Sbjct: 1 MAANSPYQSASLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHN 60
Query: 79 DEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELF 135
+ A+ LN ++ +P +I S + P+ + +F+ NL + + + F
Sbjct: 61 VVDAERALDTLNYTLIKGRPCRI--MWSHRDPSIRKSGQGNIFIKNLDKSIDNKALYDTF 118
Query: 136 VPYGTVVECDIV-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVR 187
+G ++ C +V + YGFVH ++ + + I ++NG M++GK + V +R
Sbjct: 119 SAFGNILSCKVVTDGKGNSKGYGFVHYETSEAADSAIAKVNGKMLNGKIVYVGRFIARKE 178
Query: 188 QRPGVD 193
+ PG D
Sbjct: 179 RTPGSD 184
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 24/146 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I+I N++P E R LFEK+G++ + ++ +GFV+ E + A++E+N
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ V + L + EAA K ++V NL+D+ ++RE
Sbjct: 285 DKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRE 344
Query: 134 LFVPYGTVVECDIVRNYGFVHIDSPD 159
LF PYGT+ ++R+ V +P+
Sbjct: 345 LFGPYGTITSAKVMRDTAPVETATPE 370
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ + G A+ EL
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 104 NYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 161
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 162 AQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDK 198
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 113 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGY 172
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T +++ N+
Sbjct: 173 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDP 232
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 168
E R+LF +G + + R+ +GFV+ + + ++E+N
Sbjct: 233 EVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 22/169 (13%)
Query: 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGR 83
S++G +F+ N+ ++ +F+KYG ++ VV K YGFV E++E +
Sbjct: 97 SAIGN--LFVKNLPESIDNAGLQDIFKKYGNILSSKVVTSEDGKSKGYGFVQFESEESSK 154
Query: 84 TAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVRELFVPY 138
AI++LNG V +K L + + GP+ T +++ NL + ++E F +
Sbjct: 155 VAIEKLNGYTVADKELYVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEATLQEKFSSF 214
Query: 139 GTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
G +V I ++ +GFV+ D+P D K ++ +NG + K + V
Sbjct: 215 GKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYV 263
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 43/208 (20%)
Query: 15 YSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN---- 70
Y + S R +PG + T +++ N++ S ++ F +GK+V + K+
Sbjct: 171 YVGKFVKKSDRILPGPDARYT-NLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNNGM 229
Query: 71 ---YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR-------------------- 107
+GFV+ +N ++ + A++ +NG + K L + A +
Sbjct: 230 SKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQIL 289
Query: 108 --KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP 158
KG N ++V N+ D+ E+R+ F GT+ I+R+ +GFV +P
Sbjct: 290 KYKGSN-----IYVKNIDDHVSDEELRDHFSACGTITSAKIMRDDKGISKGFGFVCFSTP 344
Query: 159 -DINKCIKELNGMMVDGKPMKVQISTSR 185
+ NK + +G M GKP+ V ++ +
Sbjct: 345 EEANKAVNTFHGFMYHGKPLYVALAQRK 372
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N+ + + F +G ++ C V + +GFVH E E
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
+ AI +NG ++N++ + + SR+ T ++V NL + ++EL
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G ++ ++R+ +GFV+ + + K + +NG V G+ + + RV
Sbjct: 211 FSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 24/131 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N+ + ++ LF ++GK++ V+++ +GFV+ E EE + A+ +N
Sbjct: 193 IYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 91 GQIV-----------------NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ V NE + E + ++V NL D+ ++R+
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 134 LFVPYGTVVEC 144
F PYG +
Sbjct: 313 EFSPYGVITSA 323
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 31/201 (15%)
Query: 21 NISCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------- 68
N CR M P G IFI N++ + + F +G ++ C V
Sbjct: 125 NRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNS 184
Query: 69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGN 121
+ + FVH E E AIK +NG ++N+K + + S+K + T +F+ N
Sbjct: 185 RGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIKN 244
Query: 122 LSDNTRAPEVRELFVPYGTVV-------ECDIVRNYGFVHIDSPD-INKCIKELNGMMVD 173
L ++ ++F P+G +V E + + + FV+ + D K + ELN ++
Sbjct: 245 LEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEIN 304
Query: 174 GKPMKVQISTSRVRQRPGVDE 194
GK + V R ++R DE
Sbjct: 305 GKKLYV----GRAQKRAERDE 321
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 32/188 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVV-------ECDVVKNYGFVHMENDEEGRTAIKELN 90
IFI N+ P + + + +F+ +G++V E + K + FV+ + + A+ ELN
Sbjct: 240 IFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELN 299
Query: 91 GQIVNEKPLKIEAATSR-----------------KGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ +N K L + A R T ++V N+ D +R
Sbjct: 300 DKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGVNLYVKNIDDEWDDDRLRS 359
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F GT+ ++R+ +GFV PD + ++E+NG M+ KP+ V ++ +
Sbjct: 360 EFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSLAQKK 419
Query: 186 VRQRPGVD 193
+R ++
Sbjct: 420 EVRRQALE 427
Score = 36.6 bits (83), Expect = 5.7, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 25 RNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHME 77
R + S +++ N++ + +R F+ G + V+++ +GFV
Sbjct: 330 RRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFS 389
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
+E A++E+NG+++ KPL + A ++
Sbjct: 390 QPDEATRAVQEMNGKMIGTKPLYVSLAQKKE 420
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 90/189 (47%), Gaps = 42/189 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N++ G + E + +F ++G + V+++ +GFV+ EN ++ +++ LN
Sbjct: 350 VFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALN 409
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
GQ ++K + EA +G N +++ NL D+
Sbjct: 410 GQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGAN-----LYIKNLDDSIGD 464
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+++ELF +GT+ C ++R+ GFV SP + ++ + E+N MV KP+ V
Sbjct: 465 DKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMNSKMVVSKPLYVA 524
Query: 181 ISTSRVRQR 189
++ + +R
Sbjct: 525 LAQRKEDRR 533
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P GT IFI N++ G + + F +G ++ C V K +GFV +++E
Sbjct: 249 PSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEE 308
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
+ AI +LNG ++N+K + + ++ + K VFV N+S+ ++ +F
Sbjct: 309 AAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIF 368
Query: 136 VPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
+G + ++R+ +GFV+ ++ D ++ LNG D K V
Sbjct: 369 GEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYV 420
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 21/166 (12%)
Query: 29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDE 80
G S + +++G+++ + + LF + +VV V ++ YG+V+ + E
Sbjct: 162 GPSRFASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVNYTDLE 221
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVP 137
+ A+ LN +N KP++I S + P+ + T +F+ NL + + F
Sbjct: 222 DAARALDVLNFTPLNGKPIRI--MYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSA 279
Query: 138 YGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
+G ++ C + + +GFV DS + K I +LNGM+++ K
Sbjct: 280 FGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDK 325
>gi|194886456|ref|XP_001976617.1| GG19920 [Drosophila erecta]
gi|190659804|gb|EDV57017.1| GG19920 [Drosophila erecta]
Length = 307
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 18/140 (12%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKEL 89
KI+I N+ + + F +G ++ C+V K+ YGFVH +++E R AI+++
Sbjct: 114 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 90 NGQIVNEKPLKIEAATSRKG----PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
NG + N + + + R+ T ++V NLS+ +RE+F PYG +
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 146 IV-------RNYGFVHIDSP 158
++ R +GFV ++P
Sbjct: 234 LMLDEEGRSRRFGFVAYENP 253
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKEL 167
K+++ NL + V + F +G ++ C++ R YGFVH DS + + I+++
Sbjct: 114 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 168 NGMMVDGKPMKV 179
NGM+ + + + V
Sbjct: 174 NGMLCNNQKVHV 185
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------VGNLSDNTRAPEVRE 133
G+ +N K + + A + T + F V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 31/188 (16%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + + + +G ++ C+VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAP 129
AIK++NG ++N + + + SRK PN V++ N ++
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-----VYIKNFGEDMDDE 205
Query: 130 EVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQI 181
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 206 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 265
Query: 182 STSRVRQR 189
+ +V ++
Sbjct: 266 AQKKVERQ 273
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 84/166 (50%), Gaps = 20/166 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFVHMEND 79
P S T +++G+++P + ++ F G ++ + + NY +V+ ++
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKV---FVGNLSDNTRAPEVRELFV 136
++ A+ +N ++ KP++I S++ P+ + V FV NL + + +
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS 120
Query: 137 PYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
+G ++ C++V + YGFVH ++ + + IK++NGM+++G+
Sbjct: 121 AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSD-----NTRAP 129
+IV KPL + A ++ T ++ ++ N RAP
Sbjct: 356 RIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAP 398
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------VGNLSDNTRAPEVRE 133
G+ +N K + + A + T + F V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 31/188 (16%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + + + +G ++ C+VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAP 129
AIK++NG ++N + + + SRK PN V++ N ++
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-----VYIKNFGEDMDDE 205
Query: 130 EVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQI 181
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 206 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 265
Query: 182 STSRVRQR 189
+ +V ++
Sbjct: 266 AQKKVERQ 273
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 84/166 (50%), Gaps = 20/166 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFVHMEND 79
P S T +++G+++P + ++ F G ++ + + NY +V+ ++
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKV---FVGNLSDNTRAPEVRELFV 136
++ A+ +N ++ KP++I S++ P+ + V FV NL + + +
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS 120
Query: 137 PYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
+G ++ C++V + YGFVH ++ + + IK++NGM+++G+
Sbjct: 121 AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSD-----NTRAP 129
+IV KPL + A ++ T ++ ++ N RAP
Sbjct: 356 RIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAP 398
>gi|340546029|gb|AEK51813.1| cytoplasmic poly(A) binding protein 1 [Alligator mississippiensis]
gi|402697275|gb|AFQ90825.1| polyA-binding protein cytoplasmic 1, partial [Anniella pulchra]
gi|402697277|gb|AFQ90826.1| polyA-binding protein cytoplasmic 1, partial [Chelydra serpentina]
gi|402697281|gb|AFQ90828.1| polyA-binding protein cytoplasmic 1, partial [Cyrtodactylus sp.
JJF-2012]
gi|402697287|gb|AFQ90831.1| polyA-binding protein cytoplasmic 1, partial [Draco beccarii]
gi|402697289|gb|AFQ90832.1| polyA-binding protein cytoplasmic 1, partial [Draco sumatranus]
Length = 177
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 42 NVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNGQIVN 95
N++ + + F +G ++ C VV K YGFVH E E AI+++NG ++N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 61
Query: 96 EKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
++ + + SRK T V++ N ++ ++ELF +G + ++
Sbjct: 62 DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT 121
Query: 148 ------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRP 190
+ +GFV + D K + E+NG ++GK + V + +V ++
Sbjct: 122 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 171
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 90 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 149
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVF 118
G+ +N K + + A + T + F
Sbjct: 150 GKELNGKQIYVGRAQKKVERQTELKRKF 177
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 31/201 (15%)
Query: 21 NISCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------- 68
N CR M P G IFI N++ + + F +G ++ C V
Sbjct: 125 NRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNS 184
Query: 69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGN 121
+ + FVH E E AIK +NG ++N+K + + S+K + T +F+ N
Sbjct: 185 RGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIKN 244
Query: 122 LSDNTRAPEVRELFVPYGTVV-------ECDIVRNYGFVHIDSPD-INKCIKELNGMMVD 173
L ++ ++F P+G +V E + + + FV+ + D K + ELN ++
Sbjct: 245 LEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEIN 304
Query: 174 GKPMKVQISTSRVRQRPGVDE 194
GK + V R ++R DE
Sbjct: 305 GKKLYV----GRAQKRAERDE 321
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 32/188 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVV-------ECDVVKNYGFVHMENDEEGRTAIKELN 90
IFI N+ P + + + +F+ +G++V E + K + FV+ + + A+ ELN
Sbjct: 240 IFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELN 299
Query: 91 GQIVNEKPLKIEAATSR-----------------KGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ +N K L + A R T ++V N+ D +R
Sbjct: 300 DKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGVNLYVKNIDDEWDDDRLRS 359
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F GT+ ++R+ +GFV PD + ++E+NG M+ KP+ V ++ +
Sbjct: 360 EFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSLAQKK 419
Query: 186 VRQRPGVD 193
+R ++
Sbjct: 420 EVRRQALE 427
Score = 36.6 bits (83), Expect = 5.9, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 25 RNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHME 77
R + S +++ N++ + +R F+ G + V+++ +GFV
Sbjct: 330 RRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFS 389
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
+E A++E+NG+++ KPL + A ++
Sbjct: 390 QPDEATRAVQEMNGKMIGTKPLYVSLAQKKE 420
>gi|255540443|ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223550401|gb|EEF51888.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 319
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
KIF+GN+ + + LFE+ G V E D + +GFV M EE A++
Sbjct: 142 KIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVSMSTVEEAEKAVEM 201
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
+ ++ + L + A R + P P +++VGNL + + ++F +G V
Sbjct: 202 FHRHDLDGRLLTVNKAAPRGSRPERPPRVFEPGYRIYVGNLPWDVDNARLEQIFSEHGKV 261
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
V+ +V R +GFV + + ++N I L+G +DG+ ++V ++ R R+
Sbjct: 262 VDARVVYDRDTGRSRGFGFVTMSTETELNDAIAALDGRSLDGRAIRVNVAEQRPRR 317
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
++I++GN+ + +F ++GKVV+ VV + +GFV M + E AI
Sbjct: 235 YRIYVGNLPWDVDNARLEQIFSEHGKVVDARVVYDRDTGRSRGFGFVTMSTETELNDAIA 294
Query: 88 ELNGQIVNEKPLKIEAATSR 107
L+G+ ++ + +++ A R
Sbjct: 295 ALDGRSLDGRAIRVNVAEQR 314
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 132 CRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDESGASKGY 191
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T ++V N+
Sbjct: 192 GFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPV 251
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGK 175
E RELF +G V + R+ +GFV+ I+ + ELNG G+
Sbjct: 252 EATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHEHAATAVDELNGKDFKGQ 311
Query: 176 PMKV 179
+ V
Sbjct: 312 DLYV 315
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 91/241 (37%), Gaps = 73/241 (30%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
I++ N+ + E R LFEK+G V + ++ +GFV+ N E TA+ EL
Sbjct: 244 IYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHEHAATAVDEL 303
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
NG+ + L + EAA K ++V NL D ++R
Sbjct: 304 NGKDFKGQDLYVGRAQKKHEREEELRRSYEAARMEKASKYQGVNLYVKNLDDEIDDEKLR 363
Query: 133 ELFVPYGTVVECDIVRN------------------------------------------- 149
ELF P+G + ++R+
Sbjct: 364 ELFAPFGAITSAKVMRDTPAETADAEDKKEKDEEKNKENKKEGEAETEEASAPKAKRPLG 423
Query: 150 ----YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKSVPV 204
+GFV ++PD K + ++N MV KP+ V ++ + ++ ++ + + + +
Sbjct: 424 KSKGFGFVCFNNPDEATKAVSDMNQRMVSNKPLYVALAQRKDVRKSQLEASIQARNQIRM 483
Query: 205 Q 205
Q
Sbjct: 484 Q 484
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N+ + + F +G ++ C VV + +GFVH E E
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
+ AI +NG ++N++ + + SR+ T ++V NL + +++L
Sbjct: 151 AQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G ++ ++R+ +GFV+ + + K + +NG V G+ + V + RV
Sbjct: 211 FSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 84/176 (47%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ + ++ LF ++GK++ V+++ +GFV+ E EE + A+ +N
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMN 252
Query: 91 GQIVNEKPLKIEAATSR-----------------KGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ V+ + L + A R + ++V NL D+ ++R+
Sbjct: 253 GREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F PYG + ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 24/127 (18%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
RF+Q + +++RY +++ N++ E +R F YG +
Sbjct: 279 RFEQMKQDRLTRYQG------------------VNLYVKNLDDSIDDEKLRKEFSPYGVI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK 116
V+ K +GFV + EE A+ E+NG+IV KPL + A ++ T
Sbjct: 321 TSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTN 380
Query: 117 VFVGNLS 123
++ LS
Sbjct: 381 QYMQRLS 387
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------VGNLSDNTRAPEVRE 133
G+ +N K + + A + T + F V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 31/188 (16%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + + + +G ++ C+VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAP 129
AIK++NG ++N + + + SRK PN V++ N ++
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-----VYIKNFGEDMDDE 205
Query: 130 EVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQI 181
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 206 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 265
Query: 182 STSRVRQR 189
+ +V ++
Sbjct: 266 AQKKVERQ 273
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 84/166 (50%), Gaps = 20/166 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFVHMEND 79
P S T +++G+++P + ++ F G ++ + + NY +V+ ++
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKV---FVGNLSDNTRAPEVRELFV 136
++ A+ +N ++ KP++I S++ P+ + V FV NL + + +
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS 120
Query: 137 PYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
+G ++ C++V + YGFVH ++ + + IK++NGM+++G+
Sbjct: 121 AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSD-----NTRAP 129
+IV KPL + A ++ T ++ ++ N RAP
Sbjct: 356 RIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAP 398
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 23/174 (13%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I +S R+ P G +FI N++P + + F +G ++ C V K Y
Sbjct: 129 RIMLSNRD-PSTRLSGKGNVFIKNLDPSIDNKALYETFSAFGTILSCKVAMDAVGRSKGY 187
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSD 124
GFV E +E + AI +LNG ++N+K + + + + S G T V+V NL
Sbjct: 188 GFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRSRSESGAVPRFTNVYVKNLPK 247
Query: 125 NTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGM 170
E+++ F YG + ++ R++GFV+ +SP+ ++++NG+
Sbjct: 248 EITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFESPEAAAVAVEKMNGI 301
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 84/184 (45%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ + + ++ F KYG + V+K+ +GFV+ E+ E A++++N
Sbjct: 240 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFESPEAAAVAVEKMN 299
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G + E L K E + + +++ NL D+ +++E
Sbjct: 300 GISLGEDVLYVGRAQKKSEREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKE 359
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+F YG V C ++ R +GFV SP + ++ + E+NG M+ KP+ V + +
Sbjct: 360 MFSEYGNVTSCKVMMNSQGLSRGFGFVAYSSPEEASRALSEMNGKMIGRKPLYVAFAQRK 419
Query: 186 VRQR 189
+R
Sbjct: 420 EERR 423
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEG 82
F + +++ N++ + E ++ +F +YG V C V+ N +GFV + EE
Sbjct: 335 FEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSSPEEA 394
Query: 83 RTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 129
A+ E+NG+++ KPL + A ++ +F S T +P
Sbjct: 395 SRALSEMNGKMIGRKPLYVAFAQRKEERRAHLQTLFTHIRSPGTMSP 441
>gi|452822947|gb|EME29962.1| heterogeneous nuclear ribonucleoprotein A1/A3 [Galdieria
sulphuraria]
Length = 368
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 20/164 (12%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEG-RTAIK 87
KIF+G ++ T+ E ++ FE YG+V++C ++++ +GFV E +E R A K
Sbjct: 51 KIFVGGLSWETTEETLQKYFESYGRVLDCVIMRDKHTGHPRGFGFVTFEKEESADRAATK 110
Query: 88 --ELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
EL+G Q+ +K + +R PT K+FVG L + + E F G VVE
Sbjct: 111 RHELDGRQVEAKKAVPKAEYITRSQVTKPTRKIFVGGLPLSCTEEDFMEYFERLGHVVEA 170
Query: 145 DIV--------RNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQ 180
I+ R +GFV S D+ + + E + + GK ++V+
Sbjct: 171 HIMYDHQTGISRGFGFVTFSSEDMVEKVFEQSQHEIKGKIVEVK 214
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------VGNLSDNTRAPEVRE 133
G+ +N K + + A + T + F V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 31/188 (16%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + + + +G ++ C+VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAP 129
AIK++NG ++N + + + SRK PN V++ N ++
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-----VYIKNFGEDMDDE 205
Query: 130 EVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQI 181
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 206 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 265
Query: 182 STSRVRQR 189
+ +V ++
Sbjct: 266 AQKKVERQ 273
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 84/166 (50%), Gaps = 20/166 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFVHMEND 79
P S T +++G+++P + ++ F G ++ + + NY +V+ ++
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKV---FVGNLSDNTRAPEVRELFV 136
++ A+ +N ++ KP++I S++ P+ + V FV NL + + +
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS 120
Query: 137 PYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
+G ++ C++V + YGFVH ++ + + IK++NGM+++G+
Sbjct: 121 AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSD-----NTRAP 129
+IV KPL + A ++ T ++ ++ N RAP
Sbjct: 356 RIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAP 398
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 90/189 (47%), Gaps = 42/189 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N++ G + E + +F ++G + V+++ +GFV+ EN ++ +++ LN
Sbjct: 211 VFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALN 270
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
GQ ++K + EA +G N +++ NL D+
Sbjct: 271 GQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGAN-----LYIKNLDDSIGD 325
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+++ELF +GT+ C ++R+ GFV SP + ++ + E+N MV KP+ V
Sbjct: 326 DKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMNSKMVVSKPLYVA 385
Query: 181 ISTSRVRQR 189
++ + +R
Sbjct: 386 LAQRKEDRR 394
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 21/181 (11%)
Query: 19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
+I S R+ P GT IFI N++ G + + F +G ++ C V K +
Sbjct: 102 RIMYSHRD-PSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGH 160
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNT 126
GFV +++E + AI +LNG ++N+K + + ++ + K VFV N+S+
Sbjct: 161 GFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGM 220
Query: 127 RAPEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMK 178
++ +F +G + ++R+ +GFV+ ++ D ++ LNG D K
Sbjct: 221 TEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWY 280
Query: 179 V 179
V
Sbjct: 281 V 281
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 76/160 (47%), Gaps = 21/160 (13%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G++ + + LF + G VV V ++ YG+V+ N ++ A+
Sbjct: 29 TTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARAL 88
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
LN +N KP++I S + P+ + T +F+ NL + + F +G ++
Sbjct: 89 DVLNFTPLNGKPIRI--MYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILS 146
Query: 144 CDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
C + + +GFV DS + K I +LNGM+++ K
Sbjct: 147 CKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDK 186
Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCI 164
TT ++VG+L N ++ +LF G VV + R+ YG+V+ +P D + +
Sbjct: 29 TTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARAL 88
Query: 165 KELNGMMVDGKPMKVQIS 182
LN ++GKP+++ S
Sbjct: 89 DVLNFTPLNGKPIRIMYS 106
>gi|341900388|gb|EGT56323.1| CBN-TIAR-1 protein [Caenorhabditis brenneri]
Length = 399
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 31/170 (18%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
F +F+G+++ + +R F+ +G V + V+ K YGFV EE AI+
Sbjct: 131 FHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIE 190
Query: 88 ELNGQIVNEKPLKIEAATSRKG-------------------PNTPTTKVFVGNLSDNTRA 128
++NGQ + + ++ AT + G + T V+VGN++ N
Sbjct: 191 QMNGQWLGRRTIRTNWATRKPGDQEKPVHYNEKSYDEIYNQTSGDNTSVYVGNIA-NLSE 249
Query: 129 PEVRELFVPYGTVVECDI--VRNYGFVHIDSPD-INKCIKELNGMMVDGK 175
++R+ F YG + E I ++ Y FV D+ D K I ++N V G+
Sbjct: 250 EDIRQAFASYGRISEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQEVGGQ 299
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 21/179 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + I F +G ++ C V K YGFVH E +E
Sbjct: 112 PAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEE 171
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+ AI+++NG ++ K + + R N T V+V N D+ + +
Sbjct: 172 AAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEK 231
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF +G + C+++ + +GFV +P + ++ L+ ++G +K+ + ++
Sbjct: 232 LFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQ 290
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 33/185 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N + E + LF K+G + C+V+ K +GFV N EE TA++ L+
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 92 QIVNEKPLKIEAATSRKGPNTPT-------------------TKVFVGNLSDNTRAPEVR 132
+ LK+ ++K ++V NL + ++
Sbjct: 275 STIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLK 334
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTS 184
+ F YG + ++ + +GFV + P + + E+N MV KP+ V I+
Sbjct: 335 KQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQR 394
Query: 185 RVRQR 189
+ +R
Sbjct: 395 KEDRR 399
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N++P + + F +G ++ V K +
Sbjct: 106 CRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGF 165
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
G+VH E DE AI LNG ++N + + + S+K + T V++ N++
Sbjct: 166 GYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINT 225
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVH-IDSPDINKCIKELNGMMVDGKP 176
T E EL +G + R +GFV+ ++ D KC++ELN G+P
Sbjct: 226 ETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQP 285
Query: 177 MKV 179
+ V
Sbjct: 286 LYV 288
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 38/187 (20%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV----------KNYGFVHMENDEEGRTAIK 87
++I N+N T+ + L K+GK D V K +GFV+ N E+ ++
Sbjct: 218 VYIKNINTETTDKEFEELVAKFGKT---DSVVLERTPEGENKGFGFVNFVNHEDAVKCVE 274
Query: 88 ELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPE 130
ELN +PL + EA K +F+ NL D+ +
Sbjct: 275 ELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKK 334
Query: 131 VRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
+ E F PYGT+ ++ + +GFV +P + K I E N +V GKP+ V I+
Sbjct: 335 LEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 394
Query: 183 TSRVRQR 189
+ +R
Sbjct: 395 QRKDVRR 401
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 82/177 (46%), Gaps = 21/177 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++P S + +F G V V ++ Y +V+ + + +TAI++L
Sbjct: 37 LYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKL 96
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N + K +I S++ P+ +F+ NL + + + F +G ++ +
Sbjct: 97 NFTPIKGKLCRI--MWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKV 154
Query: 147 V-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
+ +G+VH + + ++ I LNGM+++G+ + V S+ + +E+
Sbjct: 155 ATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEM 211
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 93/203 (45%), Gaps = 41/203 (20%)
Query: 29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEE 81
G ++G I++ N++ + ++ LF ++G + V+++ +GFV+ E EE
Sbjct: 184 GARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEE 243
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSD 124
+ A+ +NG+ V+ + L + A R + + ++V NL D
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDD 303
Query: 125 NTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPM 177
+ ++E+F YG + ++ + +GFV SP + K + E+NG +V KP+
Sbjct: 304 SINDERLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 178 KVQIS----------TSRVRQRP 190
V ++ T++ R+RP
Sbjct: 364 YVALAQRKEERKAILTNQYRRRP 386
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEE 81
PG G IFI N+ + + F +G ++ VV N +GFVH E E
Sbjct: 91 PGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
+ AI +NG ++N++ + + SR+ T ++V NL N +++L
Sbjct: 151 AQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV+ + + K + +NG V G+ + V + R
Sbjct: 211 FSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRA 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 22/174 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 73 PSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGYGFVHFETEE 132
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-------VFVGNLSDNTRAPEVRE 133
AI+++NG ++N + + + R + V++ N D+ ++RE
Sbjct: 133 AANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLGQKARRFMNVYIKNFGDDLDDEKLRE 192
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
+F YG + ++ + +GFV + P+ K + +LN ++GK + V
Sbjct: 193 MFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDLNNKELNGKVLYV 246
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 31/153 (20%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E +R +FEKYGK+ V+ K +GFV E+ E A+ +LN
Sbjct: 176 VYIKNFGDDLDDEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDLN 235
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
+ +N K L + A + + ++V NL D+ +R+
Sbjct: 236 NKELNGKVLYVGRAQKKSERAAELKRRFEQLKMDRINRYQGVNLYVKNLDDSIDDERLRK 295
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD 159
F P+GT+ ++ + +GFV +P+
Sbjct: 296 EFTPFGTITSAKVMTDSNGRSKGFGFVCFSAPE 328
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 19/165 (11%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
G +F+ N++P + ++ +F K+G ++ C V K +GFV ++D+ A+
Sbjct: 115 GLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEENGKSKCFGFVQFDSDDSATAALN 174
Query: 88 ELNGQIVNEKPL---KIEAATSRKGPNTPT--TKVFVGNLSDNTRAPEVRELFVPYGTVV 142
LN +++ K L K RK + T T V+V NL ++ +R+ F +G V
Sbjct: 175 ALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVG 234
Query: 143 ECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
I+ R +GFV+ +SPD K ++ LNG M+ K + V
Sbjct: 235 TVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFV 279
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 38 IFIGNVNPGTS-VELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
+++G+++P S VEL+ +F G +V + ++ Y +V+ + + A+
Sbjct: 31 LYVGDLDPEVSEVELV-DVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALAC 89
Query: 89 LNGQIVNEKPLKIEAATSRKGP-NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 147
LN + KP++I + P T +FV NL + + ++++F +G ++ C +
Sbjct: 90 LNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVA 149
Query: 148 RN------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
+GFV DS D + LN M+DGK + V + ++ +E
Sbjct: 150 EENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEE 203
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 39/184 (21%), Positives = 84/184 (45%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ + ++IR F ++GKV ++K+ +GFV+ E+ +E + A++ LN
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALN 268
Query: 91 GQIVNEKPLKIEAATSRKGPN----------------TPTTKVFVGNLSDNTRAPEVREL 134
G ++ K L + A + + ++V NL + +++E
Sbjct: 269 GAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEH 328
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F G + ++R+ +GFV S + K + LNG ++ G+ + + ++ +
Sbjct: 329 FSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKE 388
Query: 187 -RQR 189
RQR
Sbjct: 389 DRQR 392
>gi|348570452|ref|XP_003471011.1| PREDICTED: polyadenylate-binding protein 5-like [Cavia porcellus]
Length = 382
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 22/177 (12%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
G IFI N++ + LF +G ++ C VV K Y +VH ++ AI
Sbjct: 104 GVGNIFIKNLDKSIDNRSLFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIW 163
Query: 88 ELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
+NG +N + + + AA R T VFV NL D+ +++ LF YG
Sbjct: 164 HMNGVQLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNLGDDMDDEKLKTLFSEYG 223
Query: 140 TVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQ 188
+VR+ +GFV ++ D K + +L+G VDGK + V + ++ +
Sbjct: 224 QTESVKLVRDASGKSKGFGFVRYETHDAAQKAVLDLHGKSVDGKVLYVGRAQKKIER 280
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 79/182 (43%), Gaps = 31/182 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N+ E ++ LF +YG+ +V K +GFV E + + A+ +L+
Sbjct: 201 VFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASGKSKGFGFVRYETHDAAQKAVLDLH 260
Query: 91 GQIVNEKPLKIEAA-----------------TSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ V+ K L + A ++ P +++ NL + +++E
Sbjct: 261 GKSVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDEEKLKE 320
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G++ ++ + +G + S + K ++E+NG +V KP+ V + R
Sbjct: 321 EFSAFGSISRAKVMMEVGQGKGFGVICFSSFEEATKAVEEMNGRLVGSKPLHVTLGQVRR 380
Query: 187 RQ 188
R
Sbjct: 381 RW 382
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/156 (19%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 40 IGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKELNG 91
+G+++P + +++ F G + + ++ YG+V+ + A+ +N
Sbjct: 22 VGDLDPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 QIVNEKPLKIEAAT-SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 147
++N KP ++ + + + +F+ NL + + LF +G ++ C +V
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRSLFYLFSAFGNILSCKVVCDD 141
Query: 148 ---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
+ Y +VH DS N+ I +NG+ ++ + + V
Sbjct: 142 NGSKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYV 177
>gi|414866997|tpg|DAA45554.1| TPA: ribonucleoprotein A [Zea mays]
Length = 262
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 26/176 (14%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
++F+GN+ + LFE+ G V +V+ + +GFV M + EE A+
Sbjct: 81 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVD 140
Query: 88 ELNGQIVNEKPLKIEAA---------TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPY 138
+ NG +++ + L++ + S + P +V+VGNLS + LF
Sbjct: 141 QFNGYVLDGRSLRVNSGPPPPRDRSSPSPQRPRGDANRVYVGNLSWGVDNSALANLFSEQ 200
Query: 139 GTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
G V+E I+ R +GFV S ++ I L+G +DG+ ++V ++ S+
Sbjct: 201 GEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDGADLDGRQIRVTVAESK 256
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 104 ATSRKGPN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFV 153
A R G + + +VFVGNL + + ++ LF G+V +++ R +GFV
Sbjct: 68 AEGRSGGDEFSDDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFV 127
Query: 154 HIDS-PDINKCIKELNGMMVDGKPMKV 179
+ S ++ + + NG ++DG+ ++V
Sbjct: 128 TMSSVEEVEVAVDQFNGYVLDGRSLRV 154
>gi|226492142|ref|NP_001148607.1| ribonucleoprotein A precursor [Zea mays]
gi|195620768|gb|ACG32214.1| ribonucleoprotein A [Zea mays]
Length = 264
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 26/176 (14%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
++F+GN+ + LFE+ G V +V+ + +GFV M + EE A+
Sbjct: 83 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVD 142
Query: 88 ELNGQIVNEKPLKIEAA---------TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPY 138
+ NG +++ + L++ + S + P +V+VGNLS + LF
Sbjct: 143 QFNGYVLDGRSLRVNSGPPPPRDRSSPSPQRPRGDANRVYVGNLSWGVDNSALANLFSEQ 202
Query: 139 GTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
G V+E I+ R +GFV S ++ I L+G +DG+ ++V ++ S+
Sbjct: 203 GEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDGADLDGRQIRVTVAESK 258
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 104 ATSRKGPN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFV 153
A R G + + +VFVGNL + + ++ LF G+V +++ R +GFV
Sbjct: 70 AEGRSGGDEFSDDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFV 129
Query: 154 HIDS-PDINKCIKELNGMMVDGKPMKV 179
+ S ++ + + NG ++DG+ ++V
Sbjct: 130 TMSSVEEVEVAVDQFNGYVLDGRSLRV 156
>gi|71993209|ref|NP_001021710.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
gi|38422742|emb|CAE54916.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
Length = 583
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 21/179 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + I F +G ++ C V K YGFVH E +E
Sbjct: 49 PAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEE 108
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+ AI+++NG ++ K + + R N T V+V N D+ + +
Sbjct: 109 AAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEK 168
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
LF +G + C+++ + +GFV +P + ++ L+ ++G +K+ + ++
Sbjct: 169 LFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQ 227
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 33/185 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N + E + LF K+G + C+V+ K +GFV N EE TA++ L+
Sbjct: 152 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 211
Query: 92 QIVNEKPLKIEAATSRKGPNTPT-------------------TKVFVGNLSDNTRAPEVR 132
+ LK+ ++K ++V NL + ++
Sbjct: 212 STIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLK 271
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTS 184
+ F YG + ++ + +GFV + P + + E+N MV KP+ V I+
Sbjct: 272 KQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQR 331
Query: 185 RVRQR 189
+ +R
Sbjct: 332 KEDRR 336
>gi|326527719|dbj|BAK08134.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 24/173 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+++GN+ E + LF++ G V +V+ N +GFV M EE AI+
Sbjct: 106 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 165
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N ++ + L + A R + P + + +VGNL + ++F +G V
Sbjct: 166 FNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEV 225
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
V IV R +GFV + S D++ I L+G +DG+P++V ++ R
Sbjct: 226 VNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 278
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRT 84
+F+ ++GN+ + +F ++G+VV +V + +GFV M + E+ +
Sbjct: 196 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 255
Query: 85 AIKELNGQIVNEKPLKIEAATSR 107
AI L+GQ ++ +PL++ A R
Sbjct: 256 AISALDGQEMDGRPLRVNVAAER 278
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N+N + + F +G ++ C VV K +GFVH E +E
Sbjct: 66 PSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENGSKGHGFVHFETEEA 125
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + S+K G T T V++ N D + L
Sbjct: 126 AERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGL 185
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
F +G ++ ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 186 FGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 238
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E + LF ++G+++ V+ K +GFV E E+ + A+ E+N
Sbjct: 168 VYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMN 227
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ +N K + K E T K ++V NL D +++
Sbjct: 228 GKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERLQK 287
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 288 EFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALA 343
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E ++ F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 271 LYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNG 330
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 129
+IV KPL + A ++ T ++ ++ P
Sbjct: 331 RIVATKPLYVALAQRKEERQAHLTNQYIQRMASVRSGP 368
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ ++ K + + A + T + ++V NL D+ +R+
Sbjct: 253 GKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ R +GFV SP + K + E+NG++V KP+ V ++
Sbjct: 313 AFSPFGTITSAKVMMEGGRSRGFGFVCFSSPEEATKAVTEMNGIIVATKPLYVSLA 368
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 25/185 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + + + +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKI---------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
AI+++NG ++N++ + + EA K P V++ N ++ ++
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFPN--VYIKNFGEDMDDERLK 208
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTS 184
+LF +G + ++ + +GFV + D K + E+NG + GK + V +
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQK 268
Query: 185 RVRQR 189
+V ++
Sbjct: 269 KVERQ 273
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 81/166 (48%), Gaps = 20/166 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFVHMEND 79
P S T +++G+++P + ++ F G ++ V + NY +V+ ++
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHP 62
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKV---FVGNLSDNTRAPEVRELFV 136
++ A+ +N ++ KP++I S+ P+ + V FV NL + + +
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRI--MWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVS 120
Query: 137 PYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
+G ++ C +V + YGFVH ++ + + I+++NGM+++ +
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR--------NYGFVHIDSP-DI 160
P+ PT ++VG+L + + E F P G ++ + R NY +V+ P D
Sbjct: 6 PSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDA 65
Query: 161 NKCIKELNGMMVDGKPMKVQIS 182
+ +N ++ GKP+++ S
Sbjct: 66 EHALDTMNFDVIKGKPVRIMWS 87
>gi|402697297|gb|AFQ90836.1| polyA-binding protein cytoplasmic 1, partial [Testudo hermanni]
Length = 176
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 42 NVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNGQIVN 95
N++ + + F +G ++ C VV K YGFVH E E AI+++NG ++N
Sbjct: 2 NLDKSIDNKALYDXFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 61
Query: 96 EKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
++ + + SRK T V++ N ++ ++ELF +G + ++
Sbjct: 62 DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKVMT 121
Query: 148 ------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRP 190
+ +GFV + D K + E+NG ++GK + V + +V ++
Sbjct: 122 DESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVERQT 171
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + I F +G ++ C V K YGFVH E +E
Sbjct: 82 PSLRRSGVGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVATDEKANSKGYGFVHFETEE 141
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
T+I ++NG ++N K + + RK T V+V N +++ +++E
Sbjct: 142 AANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKE 201
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGM-MVDGKPMKV 179
F PYG + ++ + +GFV ++ + + ++ LNG M +GK + V
Sbjct: 202 FFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYV 256
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 33/181 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N E ++ FE YGK+ V+ K +GFV E E A++ LN
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Query: 91 GQIVNE-KPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G+ + E K L K E ++ + ++V NL D+ +
Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHDSAFGVNLYVKNLDDSIDDERLC 304
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSPDINKC-IKELNGMMVDGKPMKVQISTS 184
+ F PYGT+ ++ + +GFV S + C + ELNG +V KP+ V ++
Sbjct: 305 KEFSPYGTITSAKVMTDEEGRSKGFGFVCFISANEATCAVTELNGRVVGSKPLYVALAQR 364
Query: 185 R 185
+
Sbjct: 365 K 365
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ E + F YG + V+ K +GFV + E A+ ELN
Sbjct: 289 LYVKNLDDSIDDERLCKEFSPYGTITSAKVMTDEEGRSKGFGFVCFISANEATCAVTELN 348
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVP 137
G++V KPL + A ++ ++ +++ R ++ ++F P
Sbjct: 349 GRVVGSKPLYVALAQRKEERKAHLASQYMRHMT-GMRMQQLGQIFPP 394
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + +++ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVELMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------VGNLSDNTRAPEVRE 133
G+ +N K + + A + T + F V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 86/188 (45%), Gaps = 31/188 (16%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + + + +G ++ C+VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAP 129
AIK++NG ++N + + + SRK PN V++ N ++
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-----VYIKNFGEDMDDE 205
Query: 130 EVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQI 181
+++LF +G + +++ + +GFV + D K + E+NG ++GK + V
Sbjct: 206 RLKDLFGKFGPALSVELMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 265
Query: 182 STSRVRQR 189
+ +V ++
Sbjct: 266 AQKKVERQ 273
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 84/166 (50%), Gaps = 20/166 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFVHMEND 79
P S T +++G+++P + ++ F G ++ + + NY +V+ ++
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKV---FVGNLSDNTRAPEVRELFV 136
++ A+ +N ++ KP++I S++ P+ + V FV NL + + +
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS 120
Query: 137 PYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
+G ++ C++V + YGFVH ++ + + IK++NGM+++G+
Sbjct: 121 AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSD-----NTRAP 129
+IV KPL + A ++ T ++ ++ N RAP
Sbjct: 356 RIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAP 398
>gi|390608549|dbj|BAM21251.1| musashi homolog protein [Ephydatia fluviatilis]
Length = 362
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 90/172 (52%), Gaps = 23/172 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEN----DEEGRT 84
KIF+G ++ T+ + ++ F KYG+V +C ++++ +GFV + +E +
Sbjct: 13 KIFVGGLSWETTEDGLKQYFSKYGEVSDCVIMQDPMTKRPRGFGFVTFTDQASVEEVMKN 72
Query: 85 AIKELNGQIVNEKPLKIEAAT--SRKGP-NTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
L+ + ++ KP +++AT S+ G N KVFVG ++ T +VR F +G V
Sbjct: 73 GPHTLDNKTIDPKPATMKSATPPSQGGSFNGRVKKVFVGGIAAGTTEDDVRSFFGQFGPV 132
Query: 142 VECDI--------VRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
E D+ +R +GFV DS D+ + +++ ++GK ++V+ + R
Sbjct: 133 TEIDLKFDKATQRMRGFGFVGFDSEDVVDRLCQIHFHQINGKTVEVKKAEPR 184
>gi|326516784|dbj|BAJ96384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 24/173 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+++GN+ E + LF++ G V +V+ N +GFV M EE AI+
Sbjct: 106 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 165
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N ++ + L + A R + P + + +VGNL + ++F +G V
Sbjct: 166 FNRYDISGRLLNVNRAAQRGSRVERPPRRFASSFRAYVGNLPWQAEDSRLVQMFSEHGEV 225
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
V IV R +GFV + S D++ I L+G +DG+P++V ++ R
Sbjct: 226 VNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 278
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRT 84
+F+ ++GN+ + +F ++G+VV +V + +GFV M + E+ +
Sbjct: 196 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 255
Query: 85 AIKELNGQIVNEKPLKIEAATSR 107
AI L+GQ ++ +PL++ A R
Sbjct: 256 AISALDGQEMDGRPLRVNVAAER 278
>gi|213401557|ref|XP_002171551.1| gar2 [Schizosaccharomyces japonicus yFS275]
gi|211999598|gb|EEB05258.1| gar2 [Schizosaccharomyces japonicus yFS275]
Length = 449
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 43/187 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI--- 86
+F+G ++ E + FE+YG VV V+ K +G+V ++ E + A+
Sbjct: 208 VFVGRLSWNVDDEWLGKEFEEYGTVVNARVIMDGQSGRSKGFGYVDFDSPEAAKAAVAVN 267
Query: 87 --KELNGQIVNEKPLKIEAATSRKGPNT-----------------PTTKVFVGNLSDNTR 127
KE++G++VN ++ +T R N P+ VF+GNLS N
Sbjct: 268 GQKEIDGRMVN-----LDISTPRPAQNNNGFAQQRASNFGDKQSPPSDTVFIGNLSFNAT 322
Query: 128 APEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDINKCIKELNGMMVDGKPMKV 179
+VR F G + + + +G+V DS D K E+NG + G+P ++
Sbjct: 323 EDDVRNAFSSCGEIQSVRLPTDMNSGRPKGFGYVTFDSIDAAKQCVEMNGHFIAGRPCRL 382
Query: 180 QISTSRV 186
ST R
Sbjct: 383 DFSTPRT 389
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 14/102 (13%)
Query: 96 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------- 147
+KP K AA S G + VFVG LS N + + F YGTVV ++
Sbjct: 192 QKPQK--AAKSESGE---SCTVFVGRLSWNVDDEWLGKEFEEYGTVVNARVIMDGQSGRS 246
Query: 148 RNYGFVHIDSPDINKCIKELNGMM-VDGKPMKVQISTSRVRQ 188
+ +G+V DSP+ K +NG +DG+ + + IST R Q
Sbjct: 247 KGFGYVDFDSPEAAKAAVAVNGQKEIDGRMVNLDISTPRPAQ 288
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 65.9 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 20/168 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C + K +GFV E++E
Sbjct: 104 PSARKSGAANVFIKNLDKAIDHKALFDTFSAFGNILSCKIATDASGQSKGHGFVQFESEE 163
Query: 81 EGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
+ AI +LNG ++N+K P + + T V+V NL + T +++ +F
Sbjct: 164 SAQNAIDKLNGMLINDKQVYVGPFQRKQDRESALSGTKFNNVYVKNLFEATTEADLKSIF 223
Query: 136 VPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELNGMMVDGK 175
YG + ++R+ +GFV+ + D K ++ LNG DGK
Sbjct: 224 GEYGAITSAVVMRDVDGKSKGFGFVNFANVEDAAKAVEALNGKNFDGK 271
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N+ T+ ++ +F +YG + V+ K +GFV+ N E+ A++ LN
Sbjct: 205 VYVKNLFEATTEADLKSIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVEDAAKAVEALN 264
Query: 91 G-------------QIVNEKPLKI----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G Q +E+ L++ E +T T +++ NL D+ E+RE
Sbjct: 265 GKNFDGKEWYVGKAQKKSERELELKERNEQSTKETVDKYHGTNLYIKNLDDSVGDEELRE 324
Query: 134 LFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSR 185
LF +GT+ C ++R+ GFV + + + E+NG MV GKP+ V ++ +
Sbjct: 325 LFSEFGTITSCKVMRDPSGISRGSGFVAFSIAEGASWALGEMNGKMVAGKPLYVALAQRK 384
Query: 186 VRQR 189
+R
Sbjct: 385 EDRR 388
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 102 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV 153
+AA S P+ T ++VG+L + P++ +LF VV I R+ YG+V
Sbjct: 11 DAAASGANPSMTTISLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYV 70
Query: 154 HI-DSPDINKCIKELNGMMVDGKPMKVQIS 182
+ ++ D K I LN ++GK +++ S
Sbjct: 71 NFSNARDAAKAIDVLNFTPLNGKTIRIMYS 100
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N+ + + F +G ++ C VV + +GFVH E E
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
+ AI +NG ++N++ + + SR+ T ++V NL + +++L
Sbjct: 151 AQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G ++ ++R+ +GFV+ + + K + +NG V G+ + V + RV
Sbjct: 211 FSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 84/176 (47%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ + ++ LF ++GK++ V+++ +GFV+ E EE + A+ +N
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMN 252
Query: 91 GQIVNEKPLKIEAATSR-----------------KGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ V+ + L + A R + ++V NL D+ ++R+
Sbjct: 253 GREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F PYG + ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 24/127 (18%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
RF+Q + +++RY +++ N++ E +R F YG +
Sbjct: 279 RFEQMKQDRLTRYQG------------------VNLYVKNLDDSIDDEKLRKEFSPYGVI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK 116
V+ K +GFV + EE A+ E+NG+IV KPL + A ++ T
Sbjct: 321 TSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTN 380
Query: 117 VFVGNLS 123
++ LS
Sbjct: 381 QYMQRLS 387
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N++P + + F +GK++ V K +
Sbjct: 138 CRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCF 197
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E +E + AI+ +NG ++N++ + + S+K + T ++V N+
Sbjct: 198 GFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDL 257
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E ELF P+G + + ++ +GFV+ + + K ++ELN ++G+
Sbjct: 258 AYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQK 317
Query: 177 MKV 179
+ V
Sbjct: 318 IYV 320
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 93/200 (46%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKV----VECDV---VKNYGFVHMENDEEGRTAIKELN 90
I++ N++ + + LF +GK+ +E D K +GFV+ E E A++ELN
Sbjct: 250 IYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELN 309
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
+ +N + + + A ++ K +FV NL + + ++ E
Sbjct: 310 DKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEE 369
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV +P + K I E+N MV+GKP+ V ++ +
Sbjct: 370 EFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRK 429
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R +++ + + + +Q
Sbjct: 430 DVRRSQLEQQIQARNQMRMQ 449
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G +NP + + +F G+V V ++ Y +V+ E+G AI+EL
Sbjct: 69 LYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEEL 128
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N V +P +I S++ P+ + +F+ NL + + F +G ++ +
Sbjct: 129 NYTPVEGRPCRI--MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKV 186
Query: 147 VRN-------YGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
+ +GFVH ++ + + I+ +NGM+++ + + V S+ + ++E+
Sbjct: 187 ATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEM 243
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ T+ E LF +YG++V + K+ +GFV+ + A++ELN
Sbjct: 233 IYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELN 292
Query: 91 GQIVNEKPLKIEAATSR-----------------KGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + A + K +F+ NL D+ +++E
Sbjct: 293 GKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKE 352
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F PYGT+ ++R+ +GFV SP + K + E N +V GKP+ V I+ +
Sbjct: 353 EFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRK 412
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 27/173 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G+ IFI N++P + + F +G+V+ C V + +
Sbjct: 121 CRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGF 180
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-------PNTPTTKVFVGNLSD 124
GFVH + + + + AI+ +NG ++N + + +K T ++V N+
Sbjct: 181 GFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDV 240
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVH-IDSPDINKCIKELNG 169
T E +LF YG +V + ++ +GFV+ +D K ++ELNG
Sbjct: 241 ETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNG 293
>gi|348542282|ref|XP_003458614.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Oreochromis
niloticus]
Length = 386
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 93/201 (46%), Gaps = 35/201 (17%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK 87
F +F+G+++P + + I+ F +GK+ +C VVK+ YGFV N + AI+
Sbjct: 95 FHVFVGDLSPEITTDDIKAAFAPFGKISDCRVVKDMATGKSKGYGFVSFFNKWDAENAIQ 154
Query: 88 ELNGQIVNEKPLKIEAATSRKGPNTPT----TK-----------------VFVGNLSDNT 126
++ GQ + + ++ AT + P T + TK V+ G ++
Sbjct: 155 QMGGQWLGGRQIRTNWATRKPAPKTTSETTNTKQLSFDEVVNQSSPSNCTVYCGGVTTGL 214
Query: 127 RAPEVRELFVPYGTVVECDIV--RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQIS- 182
+R+ F P+G ++E + + Y FV +S + I +NG ++G +K
Sbjct: 215 TEQIMRQTFSPFGQIMEIRVFPEKGYSFVRFNSHEAAAHAIVSVNGTSIEGYVVKCYWGK 274
Query: 183 -TSRVRQRPGVDEVVIGQKSV 202
T+ + Q P + +V + Q++
Sbjct: 275 ETTDMVQGP-IQQVQMAQQNT 294
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 18/166 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEEGRTAIKELNG 91
+++GN++ + LI LF + G C ++ + Y FV I +NG
Sbjct: 9 LYVGNLSRDVTEALILELFGQIGPCKSCKMIVDTAGHDPYCFVEFYEHRHATATIAAMNG 68
Query: 92 QIVNEKPLKIEAAT---SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+ + K +K+ AT S+K + VFVG+LS +++ F P+G + +C +V+
Sbjct: 69 RKILGKEVKVNWATTPTSQKKDTSSHFHVFVGDLSPEITTDDIKAAFAPFGKISDCRVVK 128
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+ YGFV + D I+++ G + G+ ++ +T +
Sbjct: 129 DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 145 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGY 204
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + + ++K + T ++V N+
Sbjct: 205 GFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQ 264
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVHI-DSPDINKCIKELNGMMVDGK 175
+ E R LF YG + + R+ +GFV+ D + ++ LN + G+
Sbjct: 265 DVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQ 324
Query: 176 PMKV 179
+ V
Sbjct: 325 KLYV 328
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 21/172 (12%)
Query: 23 SCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFV 74
S + P S + +++G ++P + ++ LF G+V V ++ Y +V
Sbjct: 61 SGTSAPATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYV 120
Query: 75 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEV 131
+ N +G A+++LN ++ +P +I S++ P T VF+ NL +
Sbjct: 121 NYNNTADGERALEDLNYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKAL 178
Query: 132 RELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
+ F +G ++ C + ++ YGFVH ++ + IK +NGM+++ K
Sbjct: 179 HDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEK 230
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 25/136 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
I++ NV + E R LFEKYG++ + ++ +GFV+ + E A++ L
Sbjct: 257 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEAL 316
Query: 90 N-----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N GQ + E+ L+ EAA K +++ NLSD+ ++R
Sbjct: 317 NEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 376
Query: 133 ELFVPYGTVVECDIVR 148
ELF YG + ++R
Sbjct: 377 ELFSSYGNITSAKVMR 392
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D+ +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 31/188 (16%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + +++ +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRRSGVGNIFVKNLDKSINNKVLYDTASAFGNILSCKVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAP 129
AI+++NG ++N++ + + SRK PN V++ N ++
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFPN-----VYIKNFGEDMDDE 205
Query: 130 EVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQI 181
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 206 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 265
Query: 182 STSRVRQR 189
+ +V ++
Sbjct: 266 AQKKVERQ 273
Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|385305500|gb|EIF49466.1| pub1p [Dekkera bruxellensis AWRI1499]
Length = 489
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 24/172 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVEC-----DVVK---NYGFVHMENDEEGRTAIKEL 89
+++GN++ S +++R LF G ++ D K NY F+ E+ + A++ L
Sbjct: 159 LYVGNIDNSVSEDMLRDLFGSLGAQIQSIKILYDKNKRGFNYAFIEYEDHXKAENALQAL 218
Query: 90 NGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
NG ++ PLKI A SR G N +FVG+LS + F + + V+ +
Sbjct: 219 NGTVLANYPLKITWAYRTQQSRSGEN---FTLFVGDLSPEIDDDSLAATFSKFPSFVQAN 275
Query: 146 IV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
++ R YGFV ++ D ++ +NGM + G+ +++ + R Q
Sbjct: 276 VMWDMKTGRSRGYGFVSFQNNQDAETVLQTMNGMSLGGRSIRLNWAVRRQNQ 327
Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
F +F+G+++P + + F K+ V+ +V+ + YGFV +N+++ T ++
Sbjct: 245 FTLFVGDLSPEIDDDSLAATFSKFPSFVQANVMWDMKTGRSRGYGFVSFQNNQDAETVLQ 304
Query: 88 ELNGQIVNEKPLKIEAATSRKGPN 111
+NG + + +++ A R+ N
Sbjct: 305 TMNGMSLGGRSIRLNWAVRRQNQN 328
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVN 95
+++GN+ T + PL + +G +V ++ K FV ++ E AI +LNG VN
Sbjct: 410 VYLGNLAHYTQQSDLIPLLQNFGYIVNFKLLPEKGCAFVTYDSHERAALAIVQLNGFNVN 469
Query: 96 EKPLKIEAATSRK 108
+PLK + K
Sbjct: 470 GRPLKCGWGKANK 482
>gi|356533254|ref|XP_003535181.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 275
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 38/197 (19%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMEND 79
P FS K+F+GN+ + LFE G V +V+ + +GFV M +
Sbjct: 80 PSFSP--DLKLFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSV 137
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAA-------------------TSRKGPNTPTTKVFVG 120
EE A ++ NG ++ + L++ + + GP+ +V V
Sbjct: 138 EEAEAAAQQFNGYELDGRALRVNSGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVS 197
Query: 121 NLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIKELNGMM 171
NL+ ++ LF G V+E ++ R +GFV SPD +N I+ LNG+
Sbjct: 198 NLAWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQSLNGVD 257
Query: 172 VDGKPMKVQISTSRVRQ 188
++G+ ++V ++ S+ +Q
Sbjct: 258 LNGRAIRVSLADSKPKQ 274
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 109 GPN-TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-P 158
GP+ +P K+FVGNL N + ++ ELF G V +++ R +GFV + S
Sbjct: 79 GPSFSPDLKLFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVE 138
Query: 159 DINKCIKELNGMMVDGKPMKV 179
+ ++ NG +DG+ ++V
Sbjct: 139 EAEAAAQQFNGYELDGRALRV 159
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N+N + + F +G ++ C VV K +GFVH E +E
Sbjct: 91 PSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENGSKGHGFVHFETEEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + S+K G T T V++ N D + L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
F +G ++ ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 211 FGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E + LF ++G+++ V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ +N K + K E T K ++V NL D +++
Sbjct: 253 GKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERLQK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALA 368
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E ++ F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 129
+IV KPL + A ++ T ++ ++ P
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQYIQRMASVRSGP 393
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 88/184 (47%), Gaps = 21/184 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+FI N++ + + F +GK++ V+ K Y FVH +N AI+E+NG
Sbjct: 100 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNG 159
Query: 92 QIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
+++ + + + +RK + T V++ N D+ +RE+F YG +
Sbjct: 160 KLLKDCKVFVGRFKNRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSV 219
Query: 145 DIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVV 196
++ + +GFV D+ + K ++E+NG ++G+ + V + +V ++ + ++
Sbjct: 220 KVMTDPSGKSKGFGFVSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMF 279
Query: 197 IGQK 200
QK
Sbjct: 280 EQQK 283
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E +R +F KYGK + V+ K +GFV +N E + A++E+N
Sbjct: 192 VYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGFVSFDNHEAAQKAVEEMN 251
Query: 91 GQIVN---------------EKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ +N + LK E + K+++ NL D ++R+
Sbjct: 252 GKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQGVKLYIKNLDDTIDDEKLRK 311
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F +G++ ++ + +G + SP + K + E+NG ++ KP+ + +S
Sbjct: 312 EFSSFGSISRVKVMQEEGQSKGFGLICFSSPEEATKAMTEMNGQILGSKPLNIALS 367
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELN 90
K++I N++ E +R F +G + V+ K +G + + EE A+ E+N
Sbjct: 294 KLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEEATKAMTEMN 353
Query: 91 GQIVNEKPLKI 101
GQI+ KPL I
Sbjct: 354 GQILGSKPLNI 364
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N++P + + F +G+++ C V K +
Sbjct: 122 CRIMWSQRDPSLRRNGDGNIFIKNLHPDIDNKALHDTFSAFGRILSCKVATDEHGRSKCF 181
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP-------NTPTTKVFVGNLSD 124
GFVH E E AI+ +NG +N++ + + S+K T VFV N
Sbjct: 182 GFVHYETAEAADAAIENVNGMSLNDREVFVGKHISKKDRVAKFEEMKANFTNVFVKNFGS 241
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKP 176
+ E+ +F PYG + ++ +GF++ ++ D K ++ELN V+G+
Sbjct: 242 DFTEAELAAMFEPYGKITSLYFEKDSEGKSKGFGFINFENHDAAVKAVEELNDKEVNGQK 301
Query: 177 MKV 179
+ V
Sbjct: 302 IYV 304
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 92/200 (46%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N + + +FE YGK+ K+ +GF++ EN + A++ELN
Sbjct: 234 VFVKNFGSDFTEAELAAMFEPYGKITSLYFEKDSEGKSKGFGFINFENHDAAVKAVEELN 293
Query: 91 GQIVNEKPLKIEAATSRK------GPNTPTTK-----------VFVGNLSDNTRAPEVRE 133
+ VN + + + A ++ TT+ +FV NL D+ + + E
Sbjct: 294 DKEVNGQKIYVGRAQKKRERIEELKKQYETTRLEKLSKYQGVNLFVKNLDDSLTSEMLEE 353
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV +P + K I E+N MV GKP+ V ++ +
Sbjct: 354 EFKPFGTITSAKVMVDETGKSKGFGFVCFSAPEEATKAITEMNQRMVLGKPLYVALAQRK 413
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R +++ + + + +Q
Sbjct: 414 DVRRSQLEQQIQARNQMRMQ 433
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 80/163 (49%), Gaps = 21/163 (12%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGR 83
+V + +++G +NP + ++ +F G+V V ++ Y +V+ E+G
Sbjct: 47 AVTSASLYVGELNPSVNEAVLYEIFSPLGQVSSIRVCRDAVTKKSLGYAYVNYHKHEDGE 106
Query: 84 TAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
A+++LN +++ +P +I S++ P+ +F+ NL + + + F +G
Sbjct: 107 RALEQLNYSLIDGRPCRI--MWSQRDPSLRRNGDGNIFIKNLHPDIDNKALHDTFSAFGR 164
Query: 141 VVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ C + + +GFVH ++ + + I+ +NGM ++ +
Sbjct: 165 ILSCKVATDEHGRSKCFGFVHYETAEAADAAIENVNGMSLNDR 207
>gi|399218847|emb|CCF75734.1| unnamed protein product [Babesia microti strain RI]
Length = 237
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 17/181 (9%)
Query: 22 ISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV----VECDVVKN----YGF 73
I RN +GT + GN++P E++ LF + G V + D V N YGF
Sbjct: 11 IYERNQEATLYIGTKSVDSGNLDPQVDEEILWELFTQVGIVRNVHIPRDKVTNQHQGYGF 70
Query: 74 VHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
V +N+ E A K +N V KP++ A+ K +F+GNL + + +
Sbjct: 71 VEFDNETEADYAQKVMNALKVYHKPIRCNKASQDKRTYEIGANLFIGNLDPDVDEKLLYD 130
Query: 134 LFVPYGTVVECDIVRN--------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTS 184
F +G V+ IVR +GFV DS D + + +NG + +P++V +
Sbjct: 131 TFSAFGLVLSTKIVREEETGLGKGFGFVSFDSFDSSDAALASMNGQYLCNRPIQVSYAYK 190
Query: 185 R 185
+
Sbjct: 191 K 191
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 89/186 (47%), Gaps = 21/186 (11%)
Query: 29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDE 80
G ++ + +++G ++P + ++ +F G V V ++ Y +V+ N
Sbjct: 35 GANTATSASLYVGELDPTVTESMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAA 94
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 137
+G A+++LN + +P +I S++ P T +F+ NL + + + F
Sbjct: 95 DGERALEQLNYSSIKNRPCRI--MWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAA 152
Query: 138 YGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQR 189
+G V+ C + + YGFVH ++ + + IK +NGM+++ K + V SR ++
Sbjct: 153 FGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVYVGPHISRKERQ 212
Query: 190 PGVDEV 195
+DE+
Sbjct: 213 SKIDEM 218
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 92/200 (46%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++P + E LF++YG+V + ++ +GFV+ E EE + A+ L+
Sbjct: 225 LYVKNIDPEVTDEEFENLFKQYGQVQSSLLKRDDQGRNLGFGFVNFETHEEAQKAVDALH 284
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
+ + L + A + K +++ NL D+ ++R
Sbjct: 285 ESDFHGRKLYVARAQKKAEREAELRKQYDQARQERMNKYQGVNLYIKNLEDDVDDEKLRA 344
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ C ++R+ +GFV +PD K + E+N M+ KP+ V ++ +
Sbjct: 345 EFEPFGTITSCRVMRDERGKSKGFGFVCYSAPDEATKAVAEMNNKMIGSKPLYVSLAQRK 404
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R ++ + ++ + +Q
Sbjct: 405 EIRRQQLESQIAQRQQLRMQ 424
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 27/186 (14%)
Query: 21 NISCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------- 68
N CR M P G IFI N++ + + F +G V+ C V
Sbjct: 110 NRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNS 169
Query: 69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGN 121
K YGFVH E E AIK +NG ++N+K + + SRK + T ++V N
Sbjct: 170 KGYGFVHYETAEAAENAIKSVNGMLLNDKKVYVGPHISRKERQSKIDEMRAHFTNLYVKN 229
Query: 122 LSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVD 173
+ E LF YG V + R+ +GFV+ ++ + K + L+
Sbjct: 230 IDPEVTDEEFENLFKQYGQVQSSLLKRDDQGRNLGFGFVNFETHEEAQKAVDALHESDFH 289
Query: 174 GKPMKV 179
G+ + V
Sbjct: 290 GRKLYV 295
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 27/184 (14%)
Query: 23 SCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KN 70
+CR M P G IFI N++ + + F +G V+ C V K
Sbjct: 77 ACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKG 136
Query: 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLS 123
YGFVH E E TAIK +NG ++N+K + + SRK + T ++V N+
Sbjct: 137 YGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKERQSKIEEMKNQFTNIYVKNVD 196
Query: 124 DNTRAPEVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGK 175
E +LF P+G + + R +GFV+ D+ + + ++ L+ V G+
Sbjct: 197 PEVTQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAVEALHDSDVKGR 256
Query: 176 PMKV 179
+ V
Sbjct: 257 KLFV 260
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
I++ NV+P + E LFE +G++ + + +GFV+ + EE A++ L+
Sbjct: 190 IYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAVEALH 249
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
V + L + E A K +++ NL D+ +R
Sbjct: 250 DSDVKGRKLFVARAQKKAEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDIDDERLRG 309
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F P+G + ++R+ +GFV SPD K + E+N M+ KP+ V ++ R
Sbjct: 310 EFEPFGNITSAKVMRDEKGISKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRR 369
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R ++ + + + +Q
Sbjct: 370 EVRRQQLESQIAQRNQIRMQ 389
>gi|255556436|ref|XP_002519252.1| Flowering time control protein FCA, putative [Ricinus communis]
gi|223541567|gb|EEF43116.1| Flowering time control protein FCA, putative [Ricinus communis]
Length = 811
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 26 NMPGFSSVGTF-KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG--------FVHM 76
N P + G+F K+F+G+V S E IRPLFE++G V+E ++K+ FV
Sbjct: 150 NSPDHTECGSFAKLFVGSVPRTASEEDIRPLFEQHGNVIEVALIKDKRTGQQQGCCFVKY 209
Query: 77 ENDEEGRTAIKELNGQIV---NEKPLKIEAAT-SRKGPNTPTTKVFVGNLSDNTRAPEVR 132
EE AI+ L+ Q P+++ A R+ K+FVG+L+ EV
Sbjct: 210 ATSEEADRAIRALHNQHTLPGGIGPIQVRFADGERERLGAVEYKLFVGSLNKQATEKEVE 269
Query: 133 ELFVPYGTVVECDIVRNY-------GFVHIDSPDIN-KCIKELNG---MMVDGKPMKVQI 181
E+F PYG V + ++R+ GFV S ++ I LNG M +P+ V+
Sbjct: 270 EIFSPYGHVEDVYLMRDEMKQSRGCGFVKYSSREMALAAINALNGIYKMRGCDQPLTVRF 329
Query: 182 STSRVRQRPG 191
+ + R RPG
Sbjct: 330 ADPK-RPRPG 338
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ N +G A+++L
Sbjct: 56 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 116 NYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 173
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 174 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK 210
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 125 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 184
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T V++ NL
Sbjct: 185 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDS 244
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 168
E R++F +G + + R+ +GFV+ + + ++E+N
Sbjct: 245 EIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMN 296
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 24/155 (15%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N++ + R +FEK+G++ + ++ +GFV+ E + A++E+N
Sbjct: 237 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMN 296
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ + + L + EAA K ++V NL+D+ ++RE
Sbjct: 297 DKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRE 356
Query: 134 LFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELN 168
LF PYGT+ ++R+ SPD KE +
Sbjct: 357 LFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEAD 391
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 16/166 (9%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEK 97
+++ N+ E +R LF YG + V+++ ++E D+ +A KE N+K
Sbjct: 340 LYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD---TNVERDQSPDSAGKEKEADKENDK 396
Query: 98 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS 157
EA + K + + A + + P+G + +GFV S
Sbjct: 397 ----EATPEAEKAEKAEEKPSESSEEKDKEAKKSDK--KPFGKS------KGFGFVCFSS 444
Query: 158 PD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKSV 202
PD +K + E+N MV+GKP+ V ++ + +R ++ + + ++
Sbjct: 445 PDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTI 490
>gi|426200105|gb|EKV50029.1| hypothetical protein AGABI2DRAFT_190442 [Agaricus bisporus var.
bisporus H97]
Length = 673
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 27/182 (14%)
Query: 21 NISCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------- 68
N +CR M P G +FI N++ + + F +G V+ C V
Sbjct: 110 NRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVLSCKVATDEHGRS 169
Query: 69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGN 121
K YGFVH E E AIK +NG ++N+K + + SRK + T +++ N
Sbjct: 170 KGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDEMKAQFTNLYIKN 229
Query: 122 LSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVD 173
L E ELF YG V + + +GFV+ + + + + EL+ +
Sbjct: 230 LDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVDELHDTDLK 289
Query: 174 GK 175
GK
Sbjct: 290 GK 291
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 42/189 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N++ + E LF +YG V V K +GFV+ E EE + A+ EL+
Sbjct: 225 LYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVDELH 284
Query: 91 GQIVNEKPL----------------------KIEAATSRKGPNTPTTKVFVGNLSDNTRA 128
+ K L K+E + +G N +++ NL D+
Sbjct: 285 DTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGVN-----LYIKNLEDDFDD 339
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQ 180
++R F P+G + C ++R+ +GFV SPD K + E+N M+ KP+ V
Sbjct: 340 DKLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVS 399
Query: 181 ISTSRVRQR 189
++ R +R
Sbjct: 400 LAQRREVRR 408
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 90/187 (48%), Gaps = 21/187 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEND 79
P S+ + +++G ++P + ++ +F G V V ++ Y +V+ N
Sbjct: 34 PQASTAPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNA 93
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFV 136
+G A+++LN ++ + +I S++ P T VF+ NL + + + FV
Sbjct: 94 ADGERALEQLNYSLIKNRACRI--MWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFV 151
Query: 137 PYGTVVECDIV-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQ 188
+G V+ C + + YGFVH ++ + + IK +NGM+++ K + V SR +
Sbjct: 152 AFGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKER 211
Query: 189 RPGVDEV 195
+ +DE+
Sbjct: 212 QSKLDEM 218
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 25/112 (22%)
Query: 4 FDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVV 63
++Q +L K+S+Y ++I N+ + +R FE +G +
Sbjct: 312 YEQAKLEKLSKYQG------------------VNLYIKNLEDDFDDDKLRAEFEPFGAIT 353
Query: 64 ECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
C V+ K +GFV + +E A+ E+N +++ KPL + A R+
Sbjct: 354 SCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRRE 405
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 19/149 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P GT IFI N++ + + F +G ++ C + K YGFV +N+E
Sbjct: 98 PSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEE 157
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
+ AI +LNG ++N+K + + ++ T K V+V NLS++T +++ +F
Sbjct: 158 SAQNAIDKLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIF 217
Query: 136 VPYGTVVECDIVRN-------YGFVHIDS 157
+G + ++R+ +GFV+ ++
Sbjct: 218 GEFGIITSVVVMRDGDGKSKCFGFVNFEN 246
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 92/184 (50%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ E ++ +F ++G + V+++ +GFV+ EN ++ A++ LN
Sbjct: 199 VYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALN 258
Query: 91 GQIVNEKPLKIEAATSR-------KGPNTPTTK----------VFVGNLSDNTRAPEVRE 133
G+ +EK + A + KG + K +++ NL D+ +++E
Sbjct: 259 GKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKE 318
Query: 134 LFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSR 185
LF +GT+ C ++R+ GFV S + ++ + E+NG MV KP+ V ++ +
Sbjct: 319 LFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRK 378
Query: 186 VRQR 189
+R
Sbjct: 379 EERR 382
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 78/160 (48%), Gaps = 21/160 (13%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G+++ + + LF + G+V+ V ++ YG+V+ N ++ A+
Sbjct: 17 TASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARAL 76
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
LN +N KP++I S + P+ + T +F+ NL + + + F +G ++
Sbjct: 77 DLLNFTPLNGKPIRI--MYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILS 134
Query: 144 CDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
C I + YGFV D+ + I +LNGM+++ K
Sbjct: 135 CKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDK 174
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 100 KIEAATSRKGPN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------- 149
+I+AA + GPN T ++VG+L N ++ +LF+ G V+ + R+
Sbjct: 3 QIQAAVA--GPNGVANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLG 60
Query: 150 YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
YG+V+ +P D + + LN ++GKP+++ S
Sbjct: 61 YGYVNYSNPQDAARALDLLNFTPLNGKPIRIMYS 94
>gi|253683353|dbj|BAH84828.1| TIA-1-related RNA binding protein [Spodoptera frugiperda]
Length = 283
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 18/171 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ + I LF + G+V C +++ Y F+ + TA+ +N +
Sbjct: 10 LYVGNLDASVTEVFICTLFGQIGEVKGCKIIREPGNDPYAFLEFTSHTAAATALAAMNKR 69
Query: 93 IVNEKPLKIEAATS-RKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+V +K +K+ ATS P T T+ +FVG+LS +R+ F P+G + C IVR
Sbjct: 70 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETHILRDAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRP 190
+ Y FV + D I+ +NG + + ++ ST + +P
Sbjct: 130 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPSKP 180
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 9/127 (7%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + IF+G+++P ++R F +G++ C +V K Y FV
Sbjct: 86 NQPKTDTSNHHHIFVGDLSPEIETHILRDAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVP 137
+ AI+ +NGQ + + ++ +T RK P+ P + EV P
Sbjct: 146 KKADAEAAIQAMNGQWLGSRSIRTNWST-RKPPSKPNEGAPSSKRAKQPTFDEVYNQSSP 204
Query: 138 YGTVVEC 144
T V C
Sbjct: 205 TNTTVYC 211
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 126 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 185
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + + ++K + T V+V NL
Sbjct: 186 GFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDT 245
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGK 175
E RELF YG + I R+ +GF + + ++ELN G+
Sbjct: 246 EVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLKHESAAAAVEELNDKEYKGQ 305
Query: 176 PMKV 179
+ V
Sbjct: 306 KLYV 309
Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 21/171 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEND 79
P + + +++G ++P + ++ LF G+V V ++ Y +V+ N
Sbjct: 47 PSTTQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFV 136
+G A+++LN ++ KP +I S++ P T VF+ NL + + F
Sbjct: 107 ADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFA 164
Query: 137 PYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
+G ++ C + ++ YGFVH ++ + IK +NGM+++ K + V
Sbjct: 165 AFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV 215
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 25/137 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++ N++ S E R LFEKYG++ + ++ +GF + E A++EL
Sbjct: 238 VYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLKHESAAAAVEEL 297
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N + + L + EAA K ++V NL+D+ ++R
Sbjct: 298 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLR 357
Query: 133 ELFVPYGTVVECDIVRN 149
+LF+ +G + ++R+
Sbjct: 358 DLFISFGNITSARVMRD 374
>gi|242041385|ref|XP_002468087.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
gi|241921941|gb|EER95085.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
Length = 654
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 19/171 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDE 80
P G IF+ N+N ++ LF K+G V+ C V KN YGFV + E
Sbjct: 122 PDARRSGVGNIFVKNLNNSVDNASLQELFSKFGDVLSCKVAKNEDGTSRGYGFVQFASQE 181
Query: 81 EGRTAIKELNGQIVNEKPLKIEA--ATSRKGPNTPT--TKVFVGNLSDNTRAPEVRELFV 136
AI LNG + N++ L + S + N T +++ +L D+ V+ F
Sbjct: 182 SADEAIGNLNGSLFNDRKLHVATFIKKSERSANNDDKFTNLYMKHLDDDITEELVKLKFS 241
Query: 137 PYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKPMKV 179
+G +V I+R +GFV +P+ K + ++GM++ K + V
Sbjct: 242 QFGPIVSVKIMRRPDGSSLGFGFVSFQNPESAIKAQETMHGMLLGSKALYV 292
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 21/161 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++ + E + F K G V V ++ YG+V+ + + A+ +L
Sbjct: 44 LYVGDLHEDVAEEHLFDAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVMALDKL 103
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N +V +KP+++ S + P+ + +FV NL+++ ++ELF +G V+ C +
Sbjct: 104 NHSLVLDKPIRV--MWSNRDPDARRSGVGNIFVKNLNNSVDNASLQELFSKFGDVLSCKV 161
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
+N YGFV S + ++ I LNG + + + + V
Sbjct: 162 AKNEDGTSRGYGFVQFASQESADEAIGNLNGSLFNDRKLHV 202
>gi|409082274|gb|EKM82632.1| hypothetical protein AGABI1DRAFT_111221 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 671
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 27/182 (14%)
Query: 21 NISCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------- 68
N +CR M P G +FI N++ + + F +G V+ C V
Sbjct: 110 NRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVLSCKVATDEHGRS 169
Query: 69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGN 121
K YGFVH E E AIK +NG ++N+K + + SRK + T +++ N
Sbjct: 170 KGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDEMKAQFTNLYIKN 229
Query: 122 LSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVD 173
L E ELF YG V + + +GFV+ + + + + EL+ +
Sbjct: 230 LDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVDELHDTDLK 289
Query: 174 GK 175
GK
Sbjct: 290 GK 291
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 42/189 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N++ + E LF +YG V V K +GFV+ E EE + A+ EL+
Sbjct: 225 LYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVDELH 284
Query: 91 GQIVNEKPL----------------------KIEAATSRKGPNTPTTKVFVGNLSDNTRA 128
+ K L K+E + +G N +++ NL D+
Sbjct: 285 DTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGIN-----LYIKNLEDDFDD 339
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQ 180
++R F P+G + C ++R+ +GFV SPD K + E+N M+ KP+ V
Sbjct: 340 DKLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVS 399
Query: 181 ISTSRVRQR 189
++ R +R
Sbjct: 400 LAQRREVRR 408
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 90/187 (48%), Gaps = 21/187 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEND 79
P S+ + +++G ++P + ++ +F G V V ++ Y +V+ N
Sbjct: 34 PQASTAPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNA 93
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFV 136
+G A+++LN ++ + +I S++ P T VF+ NL + + + FV
Sbjct: 94 ADGERALEQLNYSLIKNRACRI--MWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFV 151
Query: 137 PYGTVVECDIV-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQ 188
+G V+ C + + YGFVH ++ + + IK +NGM+++ K + V SR +
Sbjct: 152 AFGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKER 211
Query: 189 RPGVDEV 195
+ +DE+
Sbjct: 212 QSKLDEM 218
Score = 42.7 bits (99), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 25/112 (22%)
Query: 4 FDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVV 63
++Q +L K+S+Y IN+ +I N+ + +R FE +G +
Sbjct: 312 YEQAKLEKLSKYQG--INL----------------YIKNLEDDFDDDKLRAEFEPFGAIT 353
Query: 64 ECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
C V+ K +GFV + +E A+ E+N +++ KPL + A R+
Sbjct: 354 SCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRRE 405
>gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
Length = 300
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+F+GN+ + + LF++ G V +V+ N +GFV M EE A++
Sbjct: 122 KLFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEM 181
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N +N + L + A R + P P +++VGNL + ++F +G V
Sbjct: 182 FNRYDINGRLLTVNKAAPRGARVDRPPRAFEPAFRMYVGNLPWQVDDARLEQVFSEHGKV 241
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
VE +V R +GFV + + +++ I L+G +DG+ ++V ++ R R+
Sbjct: 242 VEARVVYDRETGRSRGFGFVTMSTQTELDDAIAALDGQSLDGRAIRVNVAEDRPRR 297
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
F++++GN+ + +F ++GKVVE VV + +GFV M E AI
Sbjct: 214 AFRMYVGNLPWQVDDARLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSTQTELDDAI 273
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ ++ + +++ A R
Sbjct: 274 AALDGQSLDGRAIRVNVAEDR 294
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 93/203 (45%), Gaps = 41/203 (20%)
Query: 29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEE 81
G ++G I++ N++ + ++ LF ++G + V+++ +GFV+ E EE
Sbjct: 184 GARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEE 243
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSD 124
+ A+ +NG+ V+ + L + A R + + ++V NL D
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDD 303
Query: 125 NTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPM 177
+ ++E+F YG + ++ + +GFV SP + K + E+NG +V KP+
Sbjct: 304 SINDERLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 178 KVQIS----------TSRVRQRP 190
V ++ T++ R+RP
Sbjct: 364 YVALAQRKEERKAILTNQYRRRP 386
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEE 81
PG G IFI N+ + + F +G ++ VV N +GFVH E E
Sbjct: 91 PGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
+ AI +NG ++N++ + + SR+ T ++V NL N +++L
Sbjct: 151 AQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV+ + + K + +NG V G+ + V + R
Sbjct: 211 FSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRA 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
>gi|301508557|gb|ADK78240.1| heterogeneous nuclear ribonucleoprotein A2 [Schmidtea mediterranea]
Length = 331
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 31/154 (20%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEN----DEEGRT 84
K+FIG + P T +R +E++G++V+ V+K+ +GFV + DE
Sbjct: 18 KLFIGGLTPQTDEIRLRKYYEQWGELVDFVVMKDNKTGRSRGFGFVTYRDPEMVDEAQNN 77
Query: 85 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT-----KVFVGNLSDNTRAPEVRELFVPYG 139
E++G+IV K A R+ NTP + K+FVG L + +R F YG
Sbjct: 78 RPHEVDGKIVEAK-----RAMPREDSNTPESHMTVNKLFVGGLKKDVTTEHLRHYFTSYG 132
Query: 140 TVVECDIV--------RNYGFVHIDSPD-INKCI 164
T+ +C+IV R +GFV D D ++K I
Sbjct: 133 TITDCEIVTWKDSGESRGFGFVTFDDYDPVDKAI 166
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 22/163 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + I F +G ++ C V + YGFVH E +E
Sbjct: 91 PSLRKSGVGNVFIKNLHKDIDNKAIFDTFSAFGNILSCRVATDEQGNSRGYGFVHFETEE 150
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVRE 133
AI ++NG ++NEK + + R G T V+V N + +++E
Sbjct: 151 AANEAINKVNGMLLNEKKVFVGKFVPRSERERMMGDKARLFTNVYVKNFGEELDDGKLKE 210
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELN 168
+F YG + ++ R +GFV ++PD + +KELN
Sbjct: 211 MFEVYGKITSARVMTDQTGKSRGFGFVSFENPDNAEQAVKELN 253
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 44/177 (24%)
Query: 52 IRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNE-------- 96
++ +FE YGK+ V+ + +GFV EN + A+KELN + +
Sbjct: 208 LKEMFEVYGKITSARVMTDQTGKSRGFGFVSFENPDNAEQAVKELNDKELGNGKKIYVGR 267
Query: 97 ---------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
+ LK+E T +G N ++V NL D +R F PYGT+
Sbjct: 268 AQKKAERLSDLKRKFEQLKMERMTRYQGVN-----LYVKNLDDVIDDERLRREFAPYGTI 322
Query: 142 VECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
++ + +GFV SP + K + E+NG ++ KP+ V ++ + +R
Sbjct: 323 TSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEMNGRIIVQKPLYVALAQRKEDRR 379
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+++ N++ E +R F YG + V+ K +GFV + EE A+ E+
Sbjct: 298 LYVKNLDDVIDDERLRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEM 357
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTTKVFV 119
NG+I+ +KPL + A ++ + FV
Sbjct: 358 NGRIIVQKPLYVALAQRKEDRRAHLSSQFV 387
>gi|353227476|emb|CCA77984.1| related to mRNA polyadenylate-binding protein PAB1 [Piriformospora
indica DSM 11827]
Length = 693
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 23/199 (11%)
Query: 9 LVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV 68
L+K + ++I S R+ P G IFI N++ G + + F +G V+ C V
Sbjct: 175 LIKGKPWHVSRIMWSQRD-PALRKTGQGNIFIKNLDEGIDNKALHDTFVAFGNVLSCKVA 233
Query: 69 -------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT------- 114
K YGFVH E E AIK ++G ++N+K + + RK +
Sbjct: 234 VDEQGNSKGYGFVHYETAEAADAAIKAVDGMLLNDKKVYVGRHIPRKERQSKLDEIRAQF 293
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDI-------VRNYGFVHIDSPDI-NKCIKE 166
T ++V NL E R+LF PYGT+ + + +GFV+ ++ ++ K +
Sbjct: 294 TNIYVKNLDTEIDEDEFRKLFEPYGTITSAVLNLDADGKSKGFGFVNYETHEMAQKAVDA 353
Query: 167 LNGMMVDGKPMKVQISTSR 185
LN ++GK + V + R
Sbjct: 354 LNEKDINGKKLFVGRAQKR 372
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
I++ N++ + R LFE YG + + K +GFV+ E E + A+ LN
Sbjct: 296 IYVKNLDTEIDEDEFRKLFEPYGTITSAVLNLDADGKSKGFGFVNYETHEMAQKAVDALN 355
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------VGNLSDNTRAPEVRE 133
+ +N K L + A R + + F + N+ D+ ++R
Sbjct: 356 EKDINGKKLFVGRAQKRNERDEELRRTFDAAKMERLAKLQGVNLYIKNIDDDMDDEKLRA 415
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F PYGT+ I+R+ +GFV +PD + I E+N M+ KP+ V ++ R
Sbjct: 416 EFEPYGTITSSKIMRDDKGVSKGFGFVCFSTPDEATRAIAEMNNKMIGSKPLYVSLAQRR 475
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R ++ + + + +Q
Sbjct: 476 DVRRQQLESQISQRNQIRMQ 495
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D+ +R+
Sbjct: 253 GKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + +++ +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKI---------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
AI+++NG ++N++ + + EA K P V++ N ++ ++
Sbjct: 151 AERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKAKEFPN--VYIKNFGEDMDDERLK 208
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTS 184
+LF +G + ++ + +GFV + D K + E+NG ++GK + V +
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQK 268
Query: 185 RVRQR 189
+V ++
Sbjct: 269 KVERQ 273
Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|226492336|ref|NP_001150253.1| ribonucleoprotein [Zea mays]
gi|195637832|gb|ACG38384.1| ribonucleoprotein [Zea mays]
Length = 275
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 26/169 (15%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----KNYG--FVHMENDEEGRTAIKEL 89
++ N+ + + +R LFE +G VV ++ KN G FV M ++EE A+ L
Sbjct: 72 RLVAQNIPWDCTADEMRALFESHGSVVGVELSMYSANKNRGLAFVTMGSEEEALAALTHL 131
Query: 90 NGQIVNEKPLKIEAATSRKG-PNTP------TTK--VFVGNLSDNTRAPEVRELFVPYGT 140
N I+N++ +K++ A RK P P T K VFVGNL+ R +RELF
Sbjct: 132 NSTILNDRKIKVDFARPRKKQPKQPAVVSDATEKYVVFVGNLTWRVRNRHLRELFASAPG 191
Query: 141 VVECDIVRN---------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
VV +++ + Y FV S + I NG ++ G+P+ V
Sbjct: 192 VVSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKILMGRPINV 240
>gi|115476954|ref|NP_001062073.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|42408160|dbj|BAD09298.1| putative RNA-binding protein cp33 [Oryza sativa Japonica Group]
gi|113624042|dbj|BAF23987.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|125561943|gb|EAZ07391.1| hypothetical protein OsI_29641 [Oryza sativa Indica Group]
gi|125603790|gb|EAZ43115.1| hypothetical protein OsJ_27706 [Oryza sativa Japonica Group]
gi|215686913|dbj|BAG90783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701414|dbj|BAG92838.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 23/168 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDV-----VKNYG--FVHMENDEEGRTAIKEL 89
++ N+ + + +R LF K+G VV+ ++ +N G FV M ++EE +A+ L
Sbjct: 74 RLIAQNIPWDCTADDMRALFGKHGSVVDVELSMYNSTRNRGLAFVTMGSEEEALSALNHL 133
Query: 90 NGQIVNEKPLKIEAATSRKG----PNTPTTK--VFVGNLSDNTRAPEVRELFVPYGTVVE 143
N +N++ +K++ SRK P+ P K VFVGNL+ R+ +RELF V
Sbjct: 134 NSTTLNDRTIKVDFTRSRKKQYVVPSAPMPKHSVFVGNLTWRVRSRHLRELFASTPGVQS 193
Query: 144 CDIVRN---------YGFVHIDSPDINK-CIKELNGMMVDGKPMKVQI 181
++V + YGFV S + + I NG + G+ + V
Sbjct: 194 VEVVFHTTSPRRSAGYGFVSFSSKEAAEAAISTFNGTKLMGRSINVMF 241
>gi|402697295|gb|AFQ90835.1| polyA-binding protein cytoplasmic 1, partial [Sternotherus minor]
Length = 175
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 21/170 (12%)
Query: 42 NVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNGQIVN 95
N++ + + F +G ++ C VV K YGFVH E E AI+++NG ++N
Sbjct: 2 NLDKSJDNKALYDXFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 61
Query: 96 EKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
++ + + SRK T V++ N ++ ++ELF +G + ++
Sbjct: 62 DRKVFVGRFKSRKEREAXLGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKVMT 121
Query: 148 ------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRP 190
+ +GFV + D K + E+NG +GK + V + +V ++
Sbjct: 122 DESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVERQT 171
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 58/211 (27%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 91 PSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFVHFETEE 150
Query: 81 EGRTAIKELNGQIVNEKP---------------------------------------LKI 101
+I ++NG ++N K LKI
Sbjct: 151 AANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFELKRKFEQLKI 210
Query: 102 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHI 155
E +G N ++V NL D +R+ F P+GT+ ++ + +GFV
Sbjct: 211 ERLNRYQGVN-----LYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEEGRSKGFGFVCF 265
Query: 156 DSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
P + K + E+NG +V KP+ V ++ +
Sbjct: 266 SQPEEATKAVTEMNGRIVGSKPLYVALAQRK 296
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 81/167 (48%), Gaps = 21/167 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEND 79
PG + +++G+++ + ++ F G V+ V ++ Y +V+ +
Sbjct: 3 PGAPNYPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
+ A+ +N ++ +P++I S++ P+ + VF+ NL N + + F
Sbjct: 63 ADAERALDTMNFDMIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFS 120
Query: 137 PYGTVVECDIVRN-------YGFVHIDSPDI-NKCIKELNGMMVDGK 175
+G ++ C + ++ YGFVH ++ + NK I ++NGM+++GK
Sbjct: 121 AFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGK 167
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F +G + V+ K +GFV EE A+ E+NG
Sbjct: 221 LYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEEGRSKGFGFVCFSQPEEATKAVTEMNG 280
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVP 137
+IV KPL + A ++ ++ ++ N R ++ ++F P
Sbjct: 281 RIVGSKPLYVALAQRKEDRKAHLASQYMQRMA-NVRMQQMGQIFQP 325
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N+ + + F +G ++ C VV + +GFVH E E
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
+ AI +NG ++N++ + + SR+ T ++V NL + +++L
Sbjct: 151 AQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G ++ ++R+ +GFV+ + + K + +NG V G+ + V + RV
Sbjct: 211 FSQFGKMLSVKVMRDVSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 85/179 (47%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ + ++ LF ++GK++ V+++ +GFV+ E EE + A+ +N
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKHEEAQKAVVNMN 252
Query: 91 GQIVNEKPLKIEAATSR-----------------KGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ V+ + L + A R + ++V NL D+ ++R+
Sbjct: 253 GREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F PYG + ++ + +GFV SP + K + E+NG +V KP+ V ++ R
Sbjct: 313 EFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAEGR 371
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 24/113 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
RF+Q + +++RY +++ N++ E +R F YG +
Sbjct: 279 RFEQMKQDRLTRYQG------------------VNLYVKNLDDSIDDEKLRKEFSPYGVI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 109
V+ K +GFV + EE A+ E+NG+IV KPL + A RK
Sbjct: 321 TSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAEGRKA 373
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 93/203 (45%), Gaps = 41/203 (20%)
Query: 29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEE 81
G ++G I++ N++ + ++ LF ++G + V+++ +GFV+ E EE
Sbjct: 184 GARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEE 243
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSD 124
+ A+ +NG+ V+ + L + A R + + ++V NL D
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDD 303
Query: 125 NTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPM 177
+ ++E+F YG + ++ + +GFV SP + K + E+NG +V KP+
Sbjct: 304 SINDERLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 178 KVQIS----------TSRVRQRP 190
V ++ T++ R+RP
Sbjct: 364 YVALAQRKEERKAILTNQYRRRP 386
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEE 81
PG G IFI N+ + + F +G ++ VV N +GFVH E E
Sbjct: 91 PGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
+ AI +NG ++N++ + + SR+ T ++V NL N +++L
Sbjct: 151 AQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV+ + + K + +NG V G+ + V + R
Sbjct: 211 FSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRA 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
>gi|395856984|ref|XP_003800896.1| PREDICTED: polyadenylate-binding protein 5 [Otolemur garnettii]
Length = 382
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
G IFI N++ + LF +G ++ C VV K Y +VH ++ AI
Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIW 163
Query: 88 ELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
+NG +N + + + AA R T VFV NL D+ +++ELF YG
Sbjct: 164 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNLGDDMDDEKLKELFSEYG 223
Query: 140 TVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQ 188
++R+ +GFV ++ + K + +L+G +DGK + V + ++ +
Sbjct: 224 PTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKILYVGRAQKKIER 280
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 77/182 (42%), Gaps = 31/182 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N+ E ++ LF +YG V+ K +GFV E E + A+ +L+
Sbjct: 201 VFVKNLGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 91 GQIVNEKPLKIEAA-----------------TSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++ K L + A + P +++ NL + +++E
Sbjct: 261 GKSIDGKILYVGRAQKKIERLAELRRRFERLRLKDKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +G V S + K + E+NG V KP+ V + +R
Sbjct: 321 EFSPFGSISRAKVMMEVGQGKGFGVVCFSSFEEAAKAVDEMNGRTVGSKPLHVTLGQARR 380
Query: 187 RQ 188
R
Sbjct: 381 RW 382
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/156 (19%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 40 IGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKELNG 91
+G+++P + +++ F G + + ++ YG+V+ + A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 QIVNEKPLKI-EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 147
++N KP ++ + + + +F+ NL + + LF +G ++ C +V
Sbjct: 82 DLLNGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 ---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
+ Y +VH DS N+ I +NG+ ++ + + V
Sbjct: 142 NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ N +G A+++L
Sbjct: 56 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 116 NYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 173
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 174 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK 210
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 125 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 184
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T V++ NL
Sbjct: 185 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDS 244
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 168
E R++F +G + + R+ +GFV+ + + ++E+N
Sbjct: 245 EIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMN 296
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 24/155 (15%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N++ + R +FEK+G++ + ++ +GFV+ E + A++E+N
Sbjct: 237 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMN 296
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ + + L + EAA K ++V NL+D+ ++RE
Sbjct: 297 DKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRE 356
Query: 134 LFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELN 168
LF PYGT+ ++R+ SPD KE +
Sbjct: 357 LFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEAD 391
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEK 97
+++ N+ E +R LF YG + V+++ ++E D+ +A KE N+K
Sbjct: 340 LYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD---TNVERDQSPDSAGKEKEADKENDK 396
Query: 98 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS 157
EA + K + + A + + P+G + +GFV S
Sbjct: 397 ----EATPEAEKAEKAEEKPSESSEEKDKEAKKSDK--KPFGKS------KGFGFVCFSS 444
Query: 158 PD-INKCIKELNGMMVDGKPMKVQISTSR 185
PD +K + E+N MV+GKP+ V ++ +
Sbjct: 445 PDEASKAVTEMNQRMVNGKPLYVALAQRK 473
>gi|3550483|emb|CAA11893.1| cp31BHv [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 24/173 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+++GN+ E + LF++ G V +V+ N +GFV M EE AI+
Sbjct: 106 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNKESGQSRGFGFVTMSTIEEADKAIET 165
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N ++ + L + A R + P + + +VGNL + ++F +G V
Sbjct: 166 FNRYNISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEV 225
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
V IV R +GFV + S D++ I L+G +DG+P++V ++ R
Sbjct: 226 VNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 278
Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRT 84
+F+ ++GN+ + +F ++G+VV +V + +GFV M + E+ +
Sbjct: 196 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 255
Query: 85 AIKELNGQIVNEKPLKIEAATSR 107
AI L+GQ ++ +PL++ A R
Sbjct: 256 AISALDGQEMDGRPLRVNVAAER 278
>gi|259648117|dbj|BAI40366.1| TIA-1 homologue [Bombyx mori]
Length = 402
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 19/175 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++P + + LF + G V C +++ Y F+ TA+ +N +
Sbjct: 10 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHTAAATALAAMNKR 69
Query: 93 IVNEKPLKIEAATSRKG-PNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+V +K +K+ ATS P T T+ +FVG+LS +RE F P+G + C IVR
Sbjct: 70 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
+ Y FV + D I+ +NG + + ++ ST + + GV+E
Sbjct: 130 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK-GVNE 183
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 34/164 (20%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + IF+G+++P ++R F +G++ C +V K Y FV
Sbjct: 86 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 78 NDEEGRTAIKELNGQIVNEKPLKI-------------EAATSRKGPNTPT---------- 114
+ AI+ +NGQ + + ++ E A S K PT
Sbjct: 146 KKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSP 205
Query: 115 --TKVFVGNLSDNTRAPEV-RELFVPYGTVVECDIVRNYGFVHI 155
T V+ G + N E+ + F +G + + + R+ G+ I
Sbjct: 206 TNTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRVFRDKGYAFI 249
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 220
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D+ +R+
Sbjct: 221 GKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRK 280
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 281 AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 336
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 19/153 (12%)
Query: 54 PLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI---------EAA 104
P + G V + + K YGFVH E E AI+++NG ++N++ + + EA
Sbjct: 91 PSLRRSGVVCDENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAE 150
Query: 105 TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHID- 156
K P V++ N ++ +++LF +G + ++ + +GFV +
Sbjct: 151 LGAKAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER 208
Query: 157 SPDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
D K + E+NG ++GK + V + +V ++
Sbjct: 209 HEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQ 241
Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 264 LYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 323
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 324 RIVATKPLYVALAQRKE 340
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 19/149 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G ++ C V K YGFV +++E
Sbjct: 105 PSVRKSGAGNIFIKNLDKAIDHKALHDTFSVFGNILSCKVATDPSGQSKGYGFVQFDSEE 164
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
+ AI++LNG ++N+K + + ++ +T T K VFV NLS+ T ++ + F
Sbjct: 165 AAQKAIEKLNGMLLNDKQVYVGPFLRKQERDTATDKTRFNNVFVKNLSETTAEEDLNKAF 224
Query: 136 VPYGTVVECDIVRN-------YGFVHIDS 157
+GT+ ++R+ +GFV+ ++
Sbjct: 225 GEFGTITSVVVMRDGDGKSRCFGFVNFEN 253
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 91/189 (48%), Gaps = 42/189 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+F+ N++ T+ E + F ++G + V+++ +GFV+ EN ++ A + LN
Sbjct: 206 VFVKNLSETTAEEDLNKAFGEFGTITSVVVMRDGDGKSRCFGFVNFENADDAAKAAEALN 265
Query: 91 GQIVNEKPLKI----------------------EAATSRKGPNTPTTKVFVGNLSDNTRA 128
G+ ++K + EAA +G N +++ NL D+
Sbjct: 266 GKKFDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKFQGAN-----LYIKNLDDSIGD 320
Query: 129 PEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+++ELF P+GT+ C ++R+ GFV +P + ++ + E+NG MV KP+ V
Sbjct: 321 EKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVA 380
Query: 181 ISTSRVRQR 189
++ + +R
Sbjct: 381 LAQRKEDRR 389
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 21/164 (12%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G++ + + LF + G+VV V ++ YG+V+ N ++ A+
Sbjct: 24 TTSLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARAL 83
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
+ LN VN P+++ S + P+ + +F+ NL + + F +G ++
Sbjct: 84 EVLNFTPVNGSPIRV--MYSHRDPSVRKSGAGNIFIKNLDKAIDHKALHDTFSVFGNILS 141
Query: 144 CDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
C + + YGFV DS + K I++LNGM+++ K + V
Sbjct: 142 CKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYV 185
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DI 160
PN TT ++VG+L N ++ +LF G VV + R+ YG+V+ +P D
Sbjct: 20 PNFVTTSLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDA 79
Query: 161 NKCIKELNGMMVDGKPMKVQIS 182
+ ++ LN V+G P++V S
Sbjct: 80 ARALEVLNFTPVNGSPIRVMYS 101
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D+ +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 31/188 (16%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + +++ +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAP 129
AI+++NG ++N++ + + SRK PN V++ N ++
Sbjct: 151 AERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKVKEFPN-----VYIKNFGEDMDDE 205
Query: 130 EVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQI 181
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 206 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 265
Query: 182 STSRVRQR 189
+ +V ++
Sbjct: 266 AQKKVERQ 273
Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
>gi|303275187|ref|XP_003056892.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461244|gb|EEH58537.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 302
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
I++GN++ + E++ +F + G VV V K+ YGFV N+E+ AIK L
Sbjct: 10 IYVGNLDLACTEEILWEVFVQAGPVVNVYVPKDRVSNAHQGYGFVEFANEEDADYAIKVL 69
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-- 147
N ++ KP+++ A+ K N +FVGNL + + F +G V+ +
Sbjct: 70 NMIKLHGKPVRVNKASQDKKSNDVGANLFVGNLDSELDEKLLYDTFSAFGVVITTPKIMR 129
Query: 148 -------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
R +GFV DS + + I+ +NG + +P+ V + +
Sbjct: 130 DPDSGNSRGFGFVSYDSFEAADAAIEAMNGQFLCNRPISVTFAYKK 175
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV---------KNYGFVHMENDEEGRTAIKE 88
+F+GN++ +L+ F +G V+ + + +GFV ++ E AI+
Sbjct: 97 LFVGNLDSELDEKLLYDTFSAFGVVITTPKIMRDPDSGNSRGFGFVSYDSFEAADAAIEA 156
Query: 89 LNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNL 122
+NGQ + +P+ + A T + TP ++ N+
Sbjct: 157 MNGQFLCNRPISVTFAYKKDTRGERHGTPAERMLAANM 194
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 27/163 (16%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 126 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 185
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E + AIK +NG ++N+K + + ++K + T V+V N+
Sbjct: 186 GFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQ 245
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPD 159
+T E R+LF +G + + R+ +GFV+ S D
Sbjct: 246 DTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHD 288
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 78/161 (48%), Gaps = 21/161 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ N +G A+++L
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ +P +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 117 NYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 174
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
++ YGFVH ++ + IK +NGM+++ K + V
Sbjct: 175 AQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV 215
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 25/139 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++ N++ T+ E R LFEK+G++ + ++ +GFV+ + + A++ L
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N + + L + EAA K +++ NLSD+ ++R
Sbjct: 298 NDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 357
Query: 133 ELFVPYGTVVECDIVRNYG 151
ELF YGT+ ++R++
Sbjct: 358 ELFSSYGTITSAKVMRDFA 376
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 27/163 (16%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 126 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 185
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E + AIK +NG ++N+K + + ++K + T V+V N+
Sbjct: 186 GFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQ 245
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPD 159
+T E R+LF +G + + R+ +GFV+ S D
Sbjct: 246 DTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHD 288
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 78/161 (48%), Gaps = 21/161 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ N +G A+++L
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ +P +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 117 NYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 174
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
++ YGFVH ++ + IK +NGM+++ K + V
Sbjct: 175 AQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV 215
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 25/139 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++ N++ T+ E R LFEK+G++ + ++ +GFV+ + + A++ L
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N + + L + EAA K +++ NLSD+ ++R
Sbjct: 298 NDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 357
Query: 133 ELFVPYGTVVECDIVRNYG 151
ELF YGT+ ++R++
Sbjct: 358 ELFSSYGTITSAKVMRDFA 376
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 27/163 (16%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 126 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 185
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E + AIK +NG ++N+K + + ++K + T V+V N+
Sbjct: 186 GFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQ 245
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPD 159
+T E R+LF +G + + R+ +GFV+ S D
Sbjct: 246 DTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHD 288
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 78/161 (48%), Gaps = 21/161 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ N +G A+++L
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ +P +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 117 NYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 174
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
++ YGFVH ++ + IK +NGM+++ K + V
Sbjct: 175 AQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV 215
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 25/139 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++ N++ T+ E R LFEK+G++ + ++ +GFV+ + + A++ L
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N + + L + EAA K +++ NLSD+ ++R
Sbjct: 298 NDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 357
Query: 133 ELFVPYGTVVECDIVRNYG 151
ELF YGT+ ++R++
Sbjct: 358 ELFSSYGTITSAKVMRDFA 376
>gi|357162700|ref|XP_003579494.1| PREDICTED: uncharacterized protein LOC100845138 [Brachypodium
distachyon]
Length = 929
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 34/179 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVV------EC--DVVKNYGFVHMENDEEGRTAIKEL 89
+++GN+ + LF +G++V EC + K YGFV ++ AI +
Sbjct: 206 LYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDDPHSATAAINRM 265
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPT-----------------TKVFVGNLSDNTRAPEVR 132
NG++V+ K L++ A + P+ + ++V NLS + E+
Sbjct: 266 NGRLVDGKILEVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMSSLYVRNLSLSMTKEELL 325
Query: 133 ELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKCIKELNGMMVDGKPMKVQIS 182
+ F+P+G +++ + R+ YGFV + +S + I LNG +V+GK M+V++S
Sbjct: 326 QHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIHLNGHLVEGKKMEVRVS 384
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 33/178 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+++ N++ + E + F +GK+++ V K YGFV N E AI L
Sbjct: 310 LYVRNLSLSMTKEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIHL 369
Query: 90 NGQIVNEKPLKIEA-----ATSRKGPNTPT----------TKVFVGNLSDNTRAPEVREL 134
NG +V K +++ A S + T ++V N+ + ++ E+
Sbjct: 370 NGHLVEGKKMEVRVSGVSPALSNSAVESHTDARLIKEIDMANLYVCNIPTSIDTKKLIEI 429
Query: 135 FVPYGTVVECDIVRN---------YGFVHI-DSPDINKCIKELNGMMVDGKPMKVQIS 182
F+P+G + + + YGFV DS + I ++G +V+G+ + V+++
Sbjct: 430 FLPFGKITHARVAAHQGTYSGKGRYGFVKFADSQCAAEAITLMDGALVEGETLVVRVA 487
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 87/198 (43%), Gaps = 29/198 (14%)
Query: 9 LVKVSRYSNNQINISCRNMPGFS-SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDV 67
+V+V+ S++ + + +P S + +I+I N+ T+ +++ LF +G++ + +
Sbjct: 483 VVRVAGLSSSASSPAVHGLPIPSPEINKSRIYITNLPRSTNADMMVKLFVPFGQISKVVM 542
Query: 68 VKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT------------- 114
Y V+ + AIK ++G ++ K L + R+ + PT
Sbjct: 543 NLEYSLVYYADVASAVKAIKHMDGYMIGGKRLVV-----RRSDSCPTDAAGHTSTQSLGK 597
Query: 115 -------TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--YGFVHIDSP-DINKCI 164
VFVG + ++ ELF P+G +V+ + ++ YG + P I
Sbjct: 598 EVKEIDMANVFVGRIPSTVNGDQLVELFRPFGQIVQVRVFQHQGYGMFRFNDPFSAAAAI 657
Query: 165 KELNGMMVDGKPMKVQIS 182
+NG + G + V+++
Sbjct: 658 DHMNGYQIGGSALVVRVA 675
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 129 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGY 188
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + + ++K + T ++V N+
Sbjct: 189 GFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQ 248
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVHI-DSPDINKCIKELNGMMVDGK 175
+ E R LF YG + + R+ +GFV+ D + ++ LN + G+
Sbjct: 249 DVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQ 308
Query: 176 PMKV 179
+ V
Sbjct: 309 KLYV 312
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 21/172 (12%)
Query: 23 SCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFV 74
S P S + +++G ++P + ++ LF G+V V ++ Y +V
Sbjct: 45 SGTTAPATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYV 104
Query: 75 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEV 131
+ N +G A+++LN ++ +P +I S++ P T VF+ NL +
Sbjct: 105 NYNNTADGERALEDLNYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKAL 162
Query: 132 RELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
+ F +G ++ C + ++ YGFVH ++ + IK +NGM+++ K
Sbjct: 163 HDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEK 214
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 25/136 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
I++ NV + E R LFEKYG++ + ++ +GFV+ + E A++ L
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEAL 300
Query: 90 N-----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N GQ + E+ L+ EAA K +++ NLSD+ ++R
Sbjct: 301 NEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 360
Query: 133 ELFVPYGTVVECDIVR 148
ELF YG + ++R
Sbjct: 361 ELFSSYGNITSAKVMR 376
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 19/149 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P GT IFI N++ + + F +G ++ C + K YGFV +N+E
Sbjct: 98 PSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEE 157
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELF 135
+ AI +LNG ++N+K + + ++ T K V+V NLS++T +++ +F
Sbjct: 158 SAQNAIDKLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIF 217
Query: 136 VPYGTVVECDIVRN-------YGFVHIDS 157
+G + ++R+ +GFV+ ++
Sbjct: 218 GEFGIITSVVVMRDGDGKSKCFGFVNFEN 246
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 92/184 (50%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ T+ E ++ +F ++G + V+++ +GFV+ EN ++ A++ LN
Sbjct: 199 VYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALN 258
Query: 91 GQIVNEKPLKIEAATSR-------KGPNTPTTK----------VFVGNLSDNTRAPEVRE 133
G+ +EK + A + KG + K +++ NL D+ +++E
Sbjct: 259 GKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKE 318
Query: 134 LFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSR 185
LF +GT+ C ++R+ GFV S + ++ + E+NG MV KP+ V ++ +
Sbjct: 319 LFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRK 378
Query: 186 VRQR 189
+R
Sbjct: 379 EERR 382
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 78/160 (48%), Gaps = 21/160 (13%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T +++G+++ + + LF + G+V+ V ++ YG+V+ N ++ A+
Sbjct: 17 TASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARAL 76
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
LN +N KP++I S + P+ + T +F+ NL + + + F +G ++
Sbjct: 77 DLLNFTPLNGKPIRI--MYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILS 134
Query: 144 CDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
C I + YGFV D+ + I +LNGM+++ K
Sbjct: 135 CKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDK 174
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 100 KIEAATSRKGPN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------- 149
+I+AA + GPN T ++VG+L N ++ +LF+ G V+ + R+
Sbjct: 3 QIQAAVA--GPNGVANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLG 60
Query: 150 YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
YG+V+ +P D + + LN ++GKP+++ S
Sbjct: 61 YGYVNYSNPQDAARALDLLNFTPLNGKPIRIMYS 94
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 123 CRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 182
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T V++ N+
Sbjct: 183 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQ 242
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E R++F +G + + R+ +GFV+ + D + E+N + G+
Sbjct: 243 EVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQK 302
Query: 177 MKV 179
+ V
Sbjct: 303 LYV 305
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ N +G A+++L
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 114 NYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKV 171
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 172 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK 208
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/242 (19%), Positives = 96/242 (39%), Gaps = 77/242 (31%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N++ + E R +FEK+G++ + ++ +GFV+ + + A+ E+N
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMN 294
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ + + L + EAA K ++V NL+D+ ++RE
Sbjct: 295 DKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRE 354
Query: 134 LFVPYGTVVECDIVRN-------------------------------------------- 149
LF P+GT+ ++R+
Sbjct: 355 LFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTEK 414
Query: 150 --------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQK 200
+GFV SPD +K + E+N MV+GKP+ V ++ + +R ++ + +
Sbjct: 415 KILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARN 474
Query: 201 SV 202
++
Sbjct: 475 TI 476
>gi|14906166|gb|AAK72507.1| putative polyadenylate-binding protein [Aedes aegypti]
Length = 289
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 42/182 (23%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ + + E ++ +FEKYG + V+ + +GFV EN E A++ELNG
Sbjct: 9 VYVKDFGDELNDETLKEMFEKYGTITSHRVMIKDGKGRGFGFVAFENPESAEHAVQELNG 68
Query: 92 QIVNE-----------------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRA 128
+ + E + LK+E T +G N ++V NL D+
Sbjct: 69 KELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVN-----LYVKNLDDSIDD 123
Query: 129 PEVRELFVPYGTVVECDIV------RNYGFVHID--SPDINKCIKELNGMMVDGKPMKVQ 180
+R+ F P+GT+ ++ + +GFV + + K + E+NG +V KP+ V
Sbjct: 124 ERLRKEFSPFGTITSAKVMLEEGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVA 183
Query: 181 IS 182
++
Sbjct: 184 LA 185
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G+ +FI N++ + + F +G ++ C + K Y
Sbjct: 110 CRIMWSQRDPSLRKTGSGNVFIKNLDTSIDNKALHDTFSAFGNILSCKIALDESGNSKGY 169
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E +E AIK ++G ++N+K + + RK T V+V NL +
Sbjct: 170 GFVHYETEEAADNAIKHVDGMLLNDKKVYVGRHIPRKERQAKIEQIRAKFTNVYVKNLDE 229
Query: 125 NTRAPEVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGKP 176
+ + +E+F +G + + + +GF++ ++ D +K + LN +GK
Sbjct: 230 SINDEQFKEMFSKFGPITSALVQTDEEGKSKGFGFINFENYEDAHKAVDTLNETEHNGKT 289
Query: 177 MKV 179
+ V
Sbjct: 290 LYV 292
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
+++ N++ + E + +F K+G + V K +GF++ EN E+ A+ LN
Sbjct: 222 VYVKNLDESINDEQFKEMFSKFGPITSALVQTDEEGKSKGFGFINFENYEDAHKAVDTLN 281
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
N K L + E A K +++ NL D+ ++R+
Sbjct: 282 ETEHNGKTLYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDEKLRQ 341
Query: 134 LFVPYGTV----VECD---IVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F YG + V CD + +GFV SPD K + E+NG M+ KP+ V ++ +
Sbjct: 342 EFSVYGVITSAKVMCDEKGTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVALAQRK 401
Query: 186 VRQR 189
+R
Sbjct: 402 EVRR 405
>gi|358248672|ref|NP_001239665.1| uncharacterized protein LOC100790280 [Glycine max]
gi|255644452|gb|ACU22730.1| unknown [Glycine max]
Length = 290
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 32/181 (17%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ + + LFE+ G V E D + +GFV M EE +A+++
Sbjct: 110 KLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAESAVEK 169
Query: 89 LNGQIVNEKPLKIEAATSRKGPNT---------PTTKVFVGNLS---DNTRAPEVRELFV 136
N ++ + L + A+ R + ++VGNL DNTR ++++F
Sbjct: 170 FNRYDIDGRLLTVNKASPRGTRPERPPPRRSFESSLSIYVGNLPWDVDNTR---LKQIFS 226
Query: 137 PYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRVR 187
+G VV +V R +GFV + D ++N + L+G +DG+ +KV ++ R R
Sbjct: 227 KHGNVVNARVVYDRESGRSRGFGFVTMSDETEMNDAVAALDGESLDGRAIKVSVAEDRPR 286
Query: 188 Q 188
+
Sbjct: 287 R 287
Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
+ I++GN+ ++ +F K+G VV VV + +GFV M ++ E A+
Sbjct: 204 SLSIYVGNLPWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRGFGFVTMSDETEMNDAV 263
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+G+ ++ + +K+ A R
Sbjct: 264 AALDGESLDGRAIKVSVAEDR 284
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 18/166 (10%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P GT IF+ N++ + + F +G ++ C V KNYGFVH E++E
Sbjct: 96 PSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEE 155
Query: 81 EGRTAIKELNGQIVNEKPLKIE---AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVP 137
+ AI+++NG + K + + + R +T T ++V N D ++ELF P
Sbjct: 156 SAKEAIEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKELFSP 215
Query: 138 YGTVVECDIV-----RNYGFV-HIDSPDINKCIKELNGMMV--DGK 175
YG + + R + F+ + D+ ++ LNG + DGK
Sbjct: 216 YGEITSMIVKSDNKNRKFCFINYSDADSARNAMENLNGKKITEDGK 261
Score = 43.5 bits (101), Expect = 0.047, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCI 164
P +++ NL D+ ++ELF PYGT+ ++++ +GFV + + NK +
Sbjct: 398 PGVNLYIKNLDDSMDDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAV 457
Query: 165 KELNGMMVDGKPMKVQIST------SRVRQR 189
E++ +++GKP+ V ++ SR++QR
Sbjct: 458 TEMHLKIINGKPLYVGLAEKREQRLSRLQQR 488
Score = 42.7 bits (99), Expect = 0.097, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 18 NQINISCRNM-PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------ 70
+ +N RN PG + ++I N++ + ++ LFE YG + V+K+
Sbjct: 387 DTLNTESRNKHPGVN------LYIKNLDDSMDDQTLKELFEPYGTITSAKVMKDDKDQSK 440
Query: 71 -YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
+GFV EE A+ E++ +I+N KPL + A R+
Sbjct: 441 GFGFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKRE 479
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 22/164 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + + F +G ++ C V K YGFVH E ++
Sbjct: 82 PSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDETGQSKGYGFVHFEMEQ 141
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I+++NG ++N K + + RK T V++ N+ +N E+ E
Sbjct: 142 SATQSIEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKLYTNVYIKNIDENVNDKELFE 201
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNG 169
+F YG++ ++ R +GFV + P + K + EL+G
Sbjct: 202 MFEKYGSITSFKVMFRDDGSSRGFGFVAFEDPEEAEKAVTELHG 245
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 42/193 (21%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N++ + + + +FEKYG + V+ + +GFV E+ EE A+ EL+
Sbjct: 185 VYIKNIDENVNDKELFEMFEKYGSITSFKVMFRDDGSSRGFGFVAFEDPEEAEKAVTELH 244
Query: 91 GQIVNE-----------------------KPLKIEAATSRKGPNTPTTKVFVGNLSDNTR 127
G+ E + KIE +G N ++V NL D
Sbjct: 245 GKESPEGKTYYVGRAQKKAERQQELKRKFEQYKIERMNRYQGVN-----LYVKNLDDTID 299
Query: 128 APEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
+R+ F +GT+ ++ + +GFV SP + K + ++NG +V KP+ V
Sbjct: 300 DERLRKEFSVFGTITSAKVMMDDGRSKGFGFVCFSSPEEATKAVTDMNGRIVGTKPLYVA 359
Query: 181 ISTSRVRQRPGVD 193
++ + ++ +D
Sbjct: 360 LAQRKEDRKAHLD 372
>gi|283838931|gb|ADB44797.1| FCA [Vitis vinifera]
Length = 281
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 24/185 (12%)
Query: 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG--------FVHMENDEE 81
+ G K+F+G+V + E IRPLFE++G V+E ++K+ F+ EE
Sbjct: 96 YDGGGFAKLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEE 155
Query: 82 GRTAIKELNGQIV---NEKPLKIEAATS-RKGPNTPTTKVFVGNLSDNTRAPEVRELFVP 137
AI+ L+ Q P+++ A R+ K+FVG+L+ EV+E+F P
Sbjct: 156 AERAIRALHNQYTLPGGVGPIEVRYADGERERLGAVEYKLFVGSLNKQATEKEVKEIFSP 215
Query: 138 YGTVVECDIVRNY-------GFVHIDSPDIN-KCIKELNG---MMVDGKPMKVQISTSRV 186
YG V + ++R+ GFV+ D+ I LNG M +P+ V+ + +
Sbjct: 216 YGQVEDVYLMRDELKQSRGCGFVNFSHRDMAMAAINALNGIYTMKGCDQPLTVRFADPK- 274
Query: 187 RQRPG 191
R RPG
Sbjct: 275 RPRPG 279
>gi|226528044|dbj|BAH56564.1| TIA-1-related RNA binding protein [Spodoptera litura]
Length = 388
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 18/171 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++ + I LF + G+V C +++ Y F+ + TA+ +N +
Sbjct: 10 LYVGNLDASVTEVFICTLFGQIGEVKGCKIIREPGNDPYAFLEFTSHTAAATALAAMNKR 69
Query: 93 IVNEKPLKIEAATSRKG-PNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+V +K +K+ ATS P T T+ +FVG+LS +R+ F P+G + C IVR
Sbjct: 70 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETHILRDAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRP 190
+ Y FV + D I+ +NG + + ++ ST + +P
Sbjct: 130 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPSKP 180
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 9/127 (7%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + IF+G+++P ++R F +G++ C +V K Y FV
Sbjct: 86 NQPKTDTSNHHHIFVGDLSPEIETHILRDAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 78 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVP 137
+ AI+ +NGQ + + ++ +T RK P+ P + EV P
Sbjct: 146 KKADAEAAIQAMNGQWLGSRSIRTNWST-RKPPSKPNEGAPSSKRAKQPTFDEVYNQSSP 204
Query: 138 YGTVVEC 144
T V C
Sbjct: 205 TNTTVYC 211
>gi|118918389|ref|NP_001036895.2| TIA1 cytotoxic granule-associated RNA binding protein [Bombyx mori]
gi|111608113|gb|ABH10800.1| nucleolysin TIAR protein [Bombyx mori]
Length = 402
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 19/175 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++P + + LF + G V C +++ Y F+ TA+ +N +
Sbjct: 10 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHTAAATALAAMNKR 69
Query: 93 IVNEKPLKIEAATSRKG-PNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+V +K +K+ ATS P T T+ +FVG+LS +RE F P+G + C IVR
Sbjct: 70 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
+ Y FV + D I+ +NG + + ++ ST + + GV+E
Sbjct: 130 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK-GVNE 183
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 34/164 (20%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + IF+G+++P ++R F +G++ C +V K Y FV
Sbjct: 86 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 78 NDEEGRTAIKELNGQIVNEKPLKI-------------EAATSRKGPNTPT---------- 114
+ AI+ +NGQ + + ++ E A S K PT
Sbjct: 146 KKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSP 205
Query: 115 --TKVFVGNLSDNTRAPEV-RELFVPYGTVVECDIVRNYGFVHI 155
T V+ G + N E+ + F +G + + + R+ G+ I
Sbjct: 206 TNTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRVFRDKGYAFI 249
>gi|133246|sp|P19682.1|ROC3_NICSY RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP;
Flags: Precursor
gi|100388|pir||S12109 ribonucleoprotein, 28K, precursor - common tobacco
gi|19750|emb|CAA37880.1| unnamed protein product [Nicotiana sylvestris]
Length = 276
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 24/176 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIK- 87
K+F+GN+ E + LF++ G V E D + +GFV M EE A++
Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157
Query: 88 ----ELNGQIVNEKPLKIEAATSRKGPNT--PTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
+LNG+++ + + P T PT +++VGN+ + + ++F +G V
Sbjct: 158 YSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKV 217
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
V +V R +GFV + S ++++ I L+G +DG+ ++V + R R+
Sbjct: 218 VSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRR 273
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
T++I++GN+ + +F ++GKVV VV + +GFV M ++ E AI
Sbjct: 190 TYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAI 249
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNT 112
L+GQ ++ + +++ AA R NT
Sbjct: 250 ANLDGQTLDGRTIRVNAAEERPRRNT 275
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N++ + + F +G ++ C VV + YGFVH E E
Sbjct: 91 PGLRKSGVGNIFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI +NG ++N++ + + SR+ T V++ N + ++E
Sbjct: 151 ANRAIATMNGMLLNDRKVFVGNFKSRREREAEYGAKAMEFTNVYIKNFGEEMSNERLQET 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV+ + D K ++++NG ++G+ + V + R+
Sbjct: 211 FSIFGKTLSVKVMTDNIGRSKGFGFVNFEKHQDAQKAVEDMNGKEINGRMLYVGRAQKRM 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N S E ++ F +GK + V+ K +GFV+ E ++ + A++++N
Sbjct: 193 VYIKNFGEEMSNERLQETFSIFGKTLSVKVMTDNIGRSKGFGFVNFEKHQDAQKAVEDMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N + L + A R + + ++V NL D +R+
Sbjct: 253 GKEINGRMLYVGRAQKRMERQSELKRKFEQIKQERVSRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F PYGT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F YG + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV+ KPL + A ++
Sbjct: 356 RIVSTKPLYVALAQRKE 372
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 159
GP P ++VG+L + + E F P G ++ + R+ Y +++ P D
Sbjct: 5 GPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 160 INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIG 198
+ + +N ++ G+P+++ S ++ PG+ + +G
Sbjct: 65 AERALDTMNFEVIKGRPIRIMWS----QRDPGLRKSGVG 99
>gi|32564506|ref|NP_871980.1| Protein TIAR-1, isoform f [Caenorhabditis elegans]
gi|373219014|emb|CCD65019.1| Protein TIAR-1, isoform f [Caenorhabditis elegans]
Length = 295
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 31/170 (18%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
F +F+G+++ + +R F+ +G V + V+ K YGFV EE AI+
Sbjct: 22 FHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIE 81
Query: 88 ELNGQIVNEKPLKIEAATSRKG-------------------PNTPTTKVFVGNLSDNTRA 128
++NGQ + + ++ AT + G + T V+VGN++ T
Sbjct: 82 QMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTE- 140
Query: 129 PEVRELFVPYGTVVECDI--VRNYGFVHIDSPD-INKCIKELNGMMVDGK 175
E+R+ F +G + E I ++ Y FV D+ D K I ++N V G+
Sbjct: 141 DEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQ 190
>gi|212274649|ref|NP_001130287.1| uncharacterized protein LOC100191381 [Zea mays]
gi|194688754|gb|ACF78461.1| unknown [Zea mays]
gi|414870130|tpg|DAA48687.1| TPA: ribonucleoprotein [Zea mays]
Length = 289
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 24/173 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+++GN+ E + LF++ G V +V+ N +GFV M EE AI+
Sbjct: 112 KVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQSRGFGFVTMSTIEEADKAIEM 171
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N ++ + L + A+ R + P P + +VGNL + +LF YG V
Sbjct: 172 FNRYDISGRLLNVNRASPRGTRMERPPRQFAPAFRAYVGNLPWQADDSRLVQLFSEYGEV 231
Query: 142 VECDIV--------RNYGFV-HIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
V +V R +GFV + +++ I L+G +DG+P++V ++ R
Sbjct: 232 VNAAVVYDRETGRSRGFGFVTMVSKEELDDAISALDGQELDGRPLRVNVAAER 284
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
F+ ++GN+ + LF +YG+VV VV + +GFV M + EE AI
Sbjct: 204 AFRAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAI 263
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ ++ +PL++ A R
Sbjct: 264 SALDGQELDGRPLRVNVAAER 284
>gi|32564504|ref|NP_495123.2| Protein TIAR-1, isoform e [Caenorhabditis elegans]
gi|373219013|emb|CCD65018.1| Protein TIAR-1, isoform e [Caenorhabditis elegans]
Length = 305
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 31/170 (18%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
F +F+G+++ + +R F+ +G V + V+ K YGFV EE AI+
Sbjct: 32 FHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIE 91
Query: 88 ELNGQIVNEKPLKIEAATSRKG-------------------PNTPTTKVFVGNLSDNTRA 128
++NGQ + + ++ AT + G + T V+VGN++ T
Sbjct: 92 QMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTE- 150
Query: 129 PEVRELFVPYGTVVECDI--VRNYGFVHIDSPD-INKCIKELNGMMVDGK 175
E+R+ F +G + E I ++ Y FV D+ D K I ++N V G+
Sbjct: 151 DEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQ 200
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 86/184 (46%), Gaps = 31/184 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 4 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 63
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 64 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 123
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 124 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 183
Query: 187 RQRP 190
++
Sbjct: 184 ERKA 187
>gi|6102944|emb|CAB59276.1| hypothetical protein [Homo sapiens]
Length = 367
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
G IFI N++ + LF +G ++ C VV K Y +VH ++ AI
Sbjct: 89 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIW 148
Query: 88 ELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
+NG +N + + + AA R T VFV N+ D+ +++ELF YG
Sbjct: 149 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYG 208
Query: 140 TVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQ 188
++R+ +GFV ++ + K + +L+G +DGK + V + ++ +
Sbjct: 209 PTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 265
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 31/181 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N+ E ++ LF +YG V+ K +GFV E E + A+ +L+
Sbjct: 186 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 245
Query: 91 GQIVNEKPLKIEAA-----------------TSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++ K L + A ++ P +++ NL + +++E
Sbjct: 246 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 305
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G++ ++ + +G V S + K + E+NG +V KP+ V + +R
Sbjct: 306 EFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 365
Query: 187 R 187
R
Sbjct: 366 R 366
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/158 (18%), Positives = 73/158 (46%), Gaps = 16/158 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G+++P + +++ F G + + ++ YG+V+ + A+ +
Sbjct: 5 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 64
Query: 90 NGQIVNEKPLKIEAAT-SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
N ++N KP ++ + + + +F+ NL + + LF +G ++ C +V
Sbjct: 65 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC 124
Query: 148 -----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
+ Y +VH DS N+ I +NG+ ++ + + V
Sbjct: 125 DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 162
>gi|324507975|gb|ADY43373.1| Nucleolysin TIAR [Ascaris suum]
Length = 290
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 34/175 (19%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
F +FIG+++P + ++ F +G+V + V+ K YGFV EE AI+
Sbjct: 31 FHVFIGDLSPEVDNKALKDAFAPFGEVSDAKVIRDSTTLKSKGYGFVSYPKREEAERAIE 90
Query: 88 ELNGQIVNEKPLKIEAAT---------------------SRKGPNTPTTKVFVGNLSDNT 126
++NGQ + + ++ AT ++ GP+ T V++GN++ +
Sbjct: 91 QMNGQWLGRRTIRTNWATRKPTGTDGQQSKPELSYDDVFNQTGPD--NTSVYIGNVNQSV 148
Query: 127 RAPEVRELFVPYGTVVECDIVRNYG--FVHIDSPDIN-KCIKELNGMMVDGKPMK 178
++R F +G +VE I + G FV D D I ++NG + G+ +K
Sbjct: 149 NDEDLRAAFDKFGRIVEVRIFKTQGFAFVRFDKKDSACNAIVKMNGTEIGGQTVK 203
Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRT--AIKELNGQIVN 95
++IGNVN + E +R F+K+G++VE + K GF + D++ AI ++NG +
Sbjct: 139 VYIGNVNQSVNDEDLRAAFDKFGRIVEVRIFKTQGFAFVRFDKKDSACNAIVKMNGTEIG 198
Query: 96 EKPLKIEAATSRKGPN 111
+ +K + +G N
Sbjct: 199 GQTVKCSWGRTPEGHN 214
>gi|133248|sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|19741|emb|CAA40364.1| 31kD chloroplast ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| unnamed protein product [Nicotiana sylvestris]
Length = 315
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+F+GN+ E + LFE+ G V +V+ N +GFV M EE A++
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query: 89 LNGQIVNEKPLKIEAATSR-KGPNTP------TTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N VN + L + A R + P P + +++VGN+ + +LF +G V
Sbjct: 197 YNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKV 256
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
V +V R +GFV + S +++ I L+G +DG+ ++V ++ R R+
Sbjct: 257 VSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRR 312
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
+++I++GN+ G + LF ++GKVV VV + +GFV M ++ E AI
Sbjct: 229 SYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAI 288
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNT 112
L+GQ ++ + +++ A R NT
Sbjct: 289 ANLDGQSLDGRTIRVNVAEDRSRRNT 314
>gi|126273923|ref|XP_001387749.1| nuclear localization sequence binding protein [Scheffersomyces
stipitis CBS 6054]
gi|126213619|gb|EAZ63726.1| nuclear localization sequence binding protein, partial
[Scheffersomyces stipitis CBS 6054]
Length = 245
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+F+G ++ E +R FE G V+ V+ + YG+V ++ A+ E
Sbjct: 5 LFVGRLSWNIDDEWLRREFEPLGGVISARVIMERATGKSRGYGYVDFDSKSAAEKALNEY 64
Query: 90 NGQIVNEKPLKIEAATSR---------------KGPNTPTTKVFVGNLSDNTRAPEVREL 134
G+ ++ +P+ ++ +T + P+ P+ +F+GNLS N + +
Sbjct: 65 QGRELDGRPINLDMSTGKPHVTKSTENRAKQYGDTPSAPSDTLFIGNLSFNADRDNLFNI 124
Query: 135 FVPYGTVVECDI--------VRNYGFVHIDSPDINKCIKE-LNGMMVDGKPMKVQISTSR 185
F +GTV+ C I + +G+V S D K E LNG ++G+ ++ ST +
Sbjct: 125 FGVHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAAMEALNGEYIEGRACRLDFSTPK 184
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N+ + + F +G ++ C VV + +GFVH E E
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
+ AI +NG ++N++ + + SR+ T ++V NL + +++L
Sbjct: 151 AQQAITTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G ++ ++R+ +GFV+ + K + ++NG V G+ + V + RV
Sbjct: 211 FSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 86/176 (48%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ + ++ LF ++GK++ V+++ +GFV+ + EE + A+ ++N
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ V+ + L + A R + + ++V NL D+ ++R+
Sbjct: 253 GKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F PYG + ++ + +GFV SP + K + E+NG ++ KP+ V ++
Sbjct: 313 EFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALA 368
Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E +R F YG + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+I+ KPL + A ++ T ++ LS
Sbjct: 356 RILGTKPLYVALAQRKEERKAILTNQYMQRLS 387
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G +FI N+ + + F +G ++ C V + +GFVH E +E
Sbjct: 91 PGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETNEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
+ AI +NG ++N++ + + S++ T ++V NLS + +++L
Sbjct: 151 AQQAIGTMNGMLLNDRKVFVGHFKSQREREAELGAQALEFTNIYVKNLSVDMDEQGLQDL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G ++ ++R+ +GFV+ + + K + +NG V G+ + V + R
Sbjct: 211 FFAFGNMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRA 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 92/201 (45%), Gaps = 32/201 (15%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ + ++ LF +G ++ V+++ +GFV+ E EE + A+ +N
Sbjct: 193 IYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ V+ + L + A R + ++V NL D+ ++R
Sbjct: 253 GKEVSGQQLYVGRAQKRAERQNELKRRFEQLKQDRQTRYRGVNLYVKNLDDSISDEKLRT 312
Query: 134 LFVPYGTV------VECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRV 186
+F PYG + E D + +GFV SP + K + E+NG +V KP+ V ++ R
Sbjct: 313 VFSPYGVITSAKVMTEGDHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALA-QRK 371
Query: 187 RQRPGVDEVVIGQKSVPVQAL 207
+R + ++ VQAL
Sbjct: 372 EERKAILTNQYMKRLSTVQAL 392
>gi|413921823|gb|AFW61755.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 24/173 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+++GN+ E + +F++ G V +V+ N +GFV M EE AI+
Sbjct: 109 KVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAIEM 168
Query: 89 LNGQIVNEKPLKIEAATSR----KGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
+ ++ + L + A+SR + P P + +VGNL + +LF +G V
Sbjct: 169 FSRYDISGRLLNVNRASSRGTRMERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEV 228
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
V+ +V R +GFV + S ++N I L+G +DG+P++V ++ R
Sbjct: 229 VDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQELDGRPLRVNVAAER 281
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 1 MSRFD-QQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKY 59
SR+D +L+ V+R S+ + P F+ ++GN+ + LF ++
Sbjct: 169 FSRYDISGRLLNVNRASSRGTRM---ERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEH 225
Query: 60 GKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
G+VV+ VV + +GFV M + EE AI L+GQ ++ +PL++ A R
Sbjct: 226 GEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQELDGRPLRVNVAAER 281
>gi|194386842|dbj|BAG59787.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
G IFI N++ + LF +G ++ C VV K Y +VH ++ AI
Sbjct: 72 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIW 131
Query: 88 ELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
+NG +N + + + AA R T VFV N+ D+ +++ELF YG
Sbjct: 132 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYG 191
Query: 140 TVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQ 188
++R+ +GFV ++ + K + +L+G +DGK + V + ++ +
Sbjct: 192 PTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 248
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 31/181 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N+ E ++ LF +YG V+ K +GFV E E + A+ +L+
Sbjct: 169 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 228
Query: 91 GQIVNEKPLKIEAA-----------------TSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++ K L + A ++ P +++ NL + +++E
Sbjct: 229 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 288
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G++ ++ + +G V S + K + E+NG +V KP+ V + +R
Sbjct: 289 EFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 348
Query: 187 R 187
R
Sbjct: 349 R 349
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT-SRKGPNTPTTKVFVGNLSDNTRAP 129
YG+V+ + A+ +N ++N KP ++ + + + +F+ NL +
Sbjct: 29 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR 88
Query: 130 EVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
+ LF +G ++ C +V + Y +VH DS N+ I +NG+ ++ + + V
Sbjct: 89 ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 145
>gi|403215569|emb|CCK70068.1| hypothetical protein KNAG_0D03220 [Kazachstania naganishii CBS
8797]
Length = 399
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 85/179 (47%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
+F+G ++ E ++ F G VV V+ + YG+V E+ A+KE+
Sbjct: 151 LFVGRLSWSVDDEWLKNEFAPIGGVVSARVIMERGTDRSRGYGYVDFEDISYAEKALKEM 210
Query: 90 NGQIVNEKPLKIEAATSRKG--------------PNTPTTKVFVGNLSDNTRAPEVRELF 135
G+ ++ +P+ ++ +TS+ P+ P+ +F+GNLS + + E+F
Sbjct: 211 QGKEIDGRPINVDMSTSKPAGGASNDRAKKFGDVPSEPSDTLFLGNLSFDADRDNLYEIF 270
Query: 136 VPYGTVV--------ECDIVRNYGFV-HIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+G ++ E + + +G+V + ++ D K + L G ++ +P+++ ST R
Sbjct: 271 GKFGEIISVRIPTHPETEQPKGFGYVQYTNTEDAKKALDALQGESINDRPVRLDFSTPR 329
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPDIN---KC 163
P T +FVG LS + ++ F P G VV ++ R+ G+ ++D DI+ K
Sbjct: 148 PAT-LFVGRLSWSVDDEWLKNEFAPIGGVVSARVIMERGTDRSRGYGYVDFEDISYAEKA 206
Query: 164 IKELNGMMVDGKPMKVQISTSR 185
+KE+ G +DG+P+ V +STS+
Sbjct: 207 LKEMQGKEIDGRPINVDMSTSK 228
>gi|402587661|gb|EJW81596.1| nucleolysin TIAR [Wuchereria bancrofti]
Length = 440
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 39/179 (21%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
F +F+G+++P + ++ F +G+V + V+ K YGFV EE AI+
Sbjct: 181 FHVFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIE 240
Query: 88 ELNGQIVNEKPLKIEAAT------------------------SRKGPNTPTTKVFVGNLS 123
++NGQ + + ++ AT ++ GP+ T V+VGN++
Sbjct: 241 QMNGQWLGRRTIRTNWATRKPTGTGAGDGQYGRSELNYDDVYNQTGPD--NTSVYVGNVN 298
Query: 124 DNTRAPEVRELFVPYGTVVECDIVRN--YGFVHIDSPDINKC--IKELNGMMVDGKPMK 178
N ++R F +G ++E I ++ Y FV D D + C I ++NG + G+ +K
Sbjct: 299 SNANDEDLRAAFDKFGRILEVRIFKSQGYAFVRFDKKD-SACNAICKMNGQELCGQNIK 356
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--YGFVHMENDEEGRTAIKELNGQIVN 95
+++GNVN + E +R F+K+G+++E + K+ Y FV + + AI ++NGQ +
Sbjct: 292 VYVGNVNSNANDEDLRAAFDKFGRILEVRIFKSQGYAFVRFDKKDSACNAICKMNGQELC 351
Query: 96 EKPLKIEAATSRKGPN 111
+ +K + +G N
Sbjct: 352 GQNIKCSWGRTPEGHN 367
>gi|223948225|gb|ACN28196.1| unknown [Zea mays]
gi|414590425|tpg|DAA40996.1| TPA: hypothetical protein ZEAMMB73_114709 [Zea mays]
Length = 503
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 36/185 (19%)
Query: 38 IFIGNVNPGTSVELIRPLFEK-YGKVVECDVV--------KNYGFVHMENDEEGRTAIKE 88
IF+G++ P + ++ +F Y V VV K YGFVH + E A+ E
Sbjct: 243 IFVGDLAPDVTDSMLEDVFRANYPSVRGAKVVVDRITGRPKGYGFVHFGDLNEQARAMTE 302
Query: 89 LNGQIVNEKPLKIEAATSRK---------------------GPNTP-TTKVFVGNLSDNT 126
+NG +++ + ++I AA S+K N P T VFVG L N
Sbjct: 303 MNGMMLSTRKMRIGAAASKKNTDAQQTYATNGAYQSSQGNCSENDPNNTTVFVGGLDSNV 362
Query: 127 RAPEVRELFVPYGTV--VECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQIST 183
+R++F PYG + V+ + ++ GFV S + I+ LNG + G+ K ++S
Sbjct: 363 DEEYLRQIFTPYGEISYVKIPVGKHCGFVQFTSRSCAEEAIQMLNGSQIGGQ--KARLSW 420
Query: 184 SRVRQ 188
R Q
Sbjct: 421 GRSTQ 425
>gi|212276053|ref|NP_001130512.1| uncharacterized protein LOC100191611 [Zea mays]
gi|194689348|gb|ACF78758.1| unknown [Zea mays]
gi|414590424|tpg|DAA40995.1| TPA: hypothetical protein ZEAMMB73_114709 [Zea mays]
Length = 472
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 36/185 (19%)
Query: 38 IFIGNVNPGTSVELIRPLFEK-YGKVVECDVV--------KNYGFVHMENDEEGRTAIKE 88
IF+G++ P + ++ +F Y V VV K YGFVH + E A+ E
Sbjct: 212 IFVGDLAPDVTDSMLEDVFRANYPSVRGAKVVVDRITGRPKGYGFVHFGDLNEQARAMTE 271
Query: 89 LNGQIVNEKPLKIEAATSRK---------------------GPNTP-TTKVFVGNLSDNT 126
+NG +++ + ++I AA S+K N P T VFVG L N
Sbjct: 272 MNGMMLSTRKMRIGAAASKKNTDAQQTYATNGAYQSSQGNCSENDPNNTTVFVGGLDSNV 331
Query: 127 RAPEVRELFVPYGTV--VECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQIST 183
+R++F PYG + V+ + ++ GFV S + I+ LNG + G+ K ++S
Sbjct: 332 DEEYLRQIFTPYGEISYVKIPVGKHCGFVQFTSRSCAEEAIQMLNGSQIGGQ--KARLSW 389
Query: 184 SRVRQ 188
R Q
Sbjct: 390 GRSTQ 394
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N+ + + F +G ++ C VV + +GFVH E E
Sbjct: 91 PGLRKSGVGNIFIKNLEESIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETREA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
+ AI +NG ++N + + + SR+ T V+V NL + + EL
Sbjct: 151 AQQAISTMNGMLLNNRKVFVSHFKSRQEREAELGVRAMEFTNVYVKNLQMDIDEQGLEEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
F +G + ++R+ +GFV+ + + K + ++NG V G+ + V
Sbjct: 211 FSQFGKTLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGQLLYV 263
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 34/204 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ + + LF ++GK + V+++ +GFV+ E EE + A+ ++N
Sbjct: 193 VYVKNLQMDIDEQGLEELFSQFGKTLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMN 252
Query: 91 GQIVNEKPLKIEAAT---------SRKGPNTPTTK-----------VFVGNLSDNTRAPE 130
G+ V + L + A RK K ++V NL D+
Sbjct: 253 GKEVRGQLLYVGRAQKWAERQNELKRKFQQMKQMKQDRLNHYQGVNLYVKNLDDSIDNER 312
Query: 131 VRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIST 183
+R+ F PYG + ++ + +GFV SP + K + E+NG ++ KP+ V ++
Sbjct: 313 LRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGCILGTKPLYVALAQ 372
Query: 184 SRVRQRPGVDEVVIGQKSVPVQAL 207
+ ++ + + Q+ V AL
Sbjct: 373 RKDERKAILTNQFMQQRLSNVWAL 396
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N+ + + F +G ++ C VV + +GFVH E E
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDNHGSRGFGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
+ AI +NG ++N++ + + SR+ T ++V NL + +++L
Sbjct: 151 AQQAIVTMNGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQDL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G ++ ++R+ +GFV+ + + K + ++NG V G+ + V + RV
Sbjct: 211 FSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYVGRAQKRV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 83/176 (47%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ + ++ LF ++GK++ V+++ +GFV+ E EE + A+ ++N
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVTDMN 252
Query: 91 GQIVNEKPLKIEAATSR-----------------KGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ V + L + A R + ++V NL D+ ++R
Sbjct: 253 GKEVRGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRR 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F PYG + ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 24/127 (18%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
RF+Q + +++RY +++ N++ E +R F YG +
Sbjct: 279 RFEQMKQDRLTRYQG------------------VNLYVKNLDDSIDDEKLRREFSPYGVI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK 116
V+ K +GFV + EE A+ E+NG+IV KPL + A ++ T
Sbjct: 321 TSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTN 380
Query: 117 VFVGNLS 123
++ LS
Sbjct: 381 QYMQRLS 387
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N+ + + F +G ++ C V + +GFVH E E
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
+ AI +NG ++N++ + + SR+ T ++V NL + +++L
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G ++ ++R+ +GFV+ + + K + +NG V G+ + + RV
Sbjct: 211 FSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 24/131 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N+ + ++ LF ++GK++ V+++ +GFV+ E EE + A+ +N
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 91 GQIV-----------------NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ V NE + E + ++V NL D+ ++R+
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 134 LFVPYGTVVEC 144
F PYG +
Sbjct: 313 EFSPYGVITSA 323
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 20/146 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + I F +G ++ C V K YGFVH E +E
Sbjct: 112 PAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEE 171
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPN-------TPTTKVFVGNLSDNTRAPEVRE 133
+ AI+++NG ++ K + + R N T V+V N D+ + +
Sbjct: 172 AAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKKYTNVYVKNFGDHYNKESLEK 231
Query: 134 LFVPYGTVVECDIV------RNYGFV 153
LF YGT+ CD++ + +GFV
Sbjct: 232 LFAKYGTITSCDVMTSDGKSKGFGFV 257
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 33/185 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N + E + LF KYG + CDV+ K +GFV EE A++ LN
Sbjct: 215 VYVKNFGDHYNKESLEKLFAKYGTITSCDVMTSDGKSKGFGFVAFAEPEEAEAAVQALND 274
Query: 92 QIVNEKPLKIEAATSRKGPNTPT-------------------TKVFVGNLSDNTRAPEVR 132
V LK+ ++K ++V NL ++ ++
Sbjct: 275 SPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALK 334
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTS 184
+ F +G + ++ + +GFV + P + + E+N MV KP+ V ++
Sbjct: 335 KQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQR 394
Query: 185 RVRQR 189
+ +R
Sbjct: 395 KEDRR 399
>gi|156841314|ref|XP_001644031.1| hypothetical protein Kpol_1026p21 [Vanderwaltozyma polyspora DSM
70294]
gi|156114664|gb|EDO16173.1| hypothetical protein Kpol_1026p21 [Vanderwaltozyma polyspora DSM
70294]
Length = 437
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 31/180 (17%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
T IF+G ++ E ++ FE G V+ V+ + YG+V + A+
Sbjct: 177 TATIFVGRLSWSVDDEWLKNEFEHIGDVIGARVIYERGTDRSRGYGYVDFSSKSAAERAV 236
Query: 87 KELNGQIVNEKPLKIEAATSRKG--------------PNTPTTKVFVGNLSDNTRAPEVR 132
KE++G+ ++ + + + +TS+ P+ P+ +F+GNLS N ++
Sbjct: 237 KEMHGKQIDGREINCDMSTSKPAGGNGGDRAKKFGDVPSQPSDTLFLGNLSFNADRDQIY 296
Query: 133 ELFVPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183
ELF +G ++ E + + +G+V + D + L G +D +P+++ ST
Sbjct: 297 ELFSKHGEIISVRLPTHPETEQPKGFGYVQYGNVNDAQSALDALQGEYIDNRPVRLDFST 356
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 27/161 (16%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 125 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 184
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E + AIK +NG ++N+K + + ++K + T V+V N+
Sbjct: 185 GFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQ 244
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDS 157
+T E RELF +G + + R+ +GFV+ S
Sbjct: 245 DTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTS 285
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 78/161 (48%), Gaps = 21/161 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ N +G A+++L
Sbjct: 56 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ +P +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 116 NYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 173
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
++ YGFVH ++ + IK +NGM+++ K + V
Sbjct: 174 AQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV 214
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 25/137 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++ N++ T+ E R LFEK+G++ + ++ +GFV+ + E A+ L
Sbjct: 237 VYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESAAAAVDNL 296
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N + + L + EAA K +++ NLSD+ ++R
Sbjct: 297 NEKDFKSQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 356
Query: 133 ELFVPYGTVVECDIVRN 149
+LF YGT+ ++R+
Sbjct: 357 DLFSGYGTITSAKVMRD 373
Score = 37.4 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMEND--EEGRTAIKELNGQIVN 95
++I N++ E +R LF YG + V+++ +D +E ++ KE N
Sbjct: 341 LYIKNLSDDIDDEKLRDLFSGYGTITSAKVMRDNLAAESSSDSEKEAKSEGKE------N 394
Query: 96 EKP--LKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFV 153
E P K EAA + +T K ++ + + L G +GFV
Sbjct: 395 EPPEESKDEAAEKAETKDTKEAKT-------ESKKADKKLLGKSKG----------FGFV 437
Query: 154 HIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKSV 202
SPD +K + E+N MV+GKP+ V ++ + +R ++ + + ++
Sbjct: 438 CFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTI 487
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 22/176 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + I F +G ++ C V K YGFVH E +E
Sbjct: 98 PSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEE 157
Query: 81 EGRTAIKELNGQIVNEKPL---KIEAATSRKGPNTPT----TKVFVGNLSDNTRAPEVRE 133
+ AI+++NG ++ K + K + T+R T T V++ N +D + +
Sbjct: 158 SAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELDKEALEK 217
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQI 181
LF +G + ++ + +GFV ++P D K + E++ + G K+ +
Sbjct: 218 LFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYV 273
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 44/184 (23%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E + LF K+GK+ V+ K +GFV EN E+ A+ E++
Sbjct: 201 VYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMH 260
Query: 91 ---------------GQIVNEKPL---------KIEAATSRKGPNTPTTKVFVGNLSDNT 126
Q NE+ K+E +G N ++V NL D
Sbjct: 261 EYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVN-----LYVKNLDDTV 315
Query: 127 RAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMK 178
+++ F YG + ++ + +GFV + PD K + E+NG M+ KP+
Sbjct: 316 NDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLY 375
Query: 179 VQIS 182
V ++
Sbjct: 376 VALA 379
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 25/113 (22%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
R++QQ++ ++ RY +++ N++ + ++++ FE YGK+
Sbjct: 289 RYEQQKVERMQRYQG------------------VNLYVKNLDDTVNDDILKQNFEAYGKI 330
Query: 63 VECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV E +E A+ E+NG+++ KPL + A ++
Sbjct: 331 TSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKE 383
>gi|195624584|gb|ACG34122.1| ribonucleoprotein [Zea mays]
Length = 289
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 24/173 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+++GN+ E + LF++ G V +V+ N +GFV M EE AI+
Sbjct: 112 KVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQSRGFGFVTMSTIEEADKAIEM 171
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N ++ + L + A+ R + P P + +VGNL + +LF YG V
Sbjct: 172 FNRYDISGRLLNVNRASPRGTRMERPPRQFAPAFRAYVGNLPWQADDSRLVQLFSEYGEV 231
Query: 142 VECDIV--------RNYGFV-HIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
V +V R +GFV + +++ I L+G +DG+P++V ++ R
Sbjct: 232 VNAAVVYDRETGRSRGFGFVTMVSKEELDDAISALDGQELDGRPLRVNVAAER 284
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
F+ ++GN+ + LF +YG+VV VV + +GFV M + EE AI
Sbjct: 204 AFRAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAI 263
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ ++ +PL++ A R
Sbjct: 264 SALDGQELDGRPLRVNVAAER 284
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N+ + I F +G ++ C + K Y
Sbjct: 90 CRIMWSQRDPSLRRSGVGNIFIKNLEKDIDNKAIYDTFSAFGNILSCKIALDENGNSKGY 149
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSD 124
FVH E E AI+++NG +++ K + + SRK T ++V N D
Sbjct: 150 AFVHFETQEAANRAIEKVNGMLLSGKKVFVGHFMSRKERMEKIGNLAAKYTNLYVKNFRD 209
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
+ E R+LF G +V C ++R+ +GFV ++ + K ++ LN D +
Sbjct: 210 DISDDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVETLNEKEFDLRR 269
Query: 177 MKV 179
M V
Sbjct: 270 MYV 272
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N S + R LFE+ GK+V C V+++ +GFV E E + A++ LN
Sbjct: 202 LYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVETLN 261
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
+ + + + + A + + + ++V NL D ++R+
Sbjct: 262 EKEFDLRRMYVARAQKKSERSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLRQ 321
Query: 134 LFVPYGTVV-------ECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
F +GT+ E I R +GFV SP+ K + E+NG ++ KP+ V ++ +
Sbjct: 322 EFANFGTITSAKVMSDEKGISRGFGFVCFSSPEEATKAVTEMNGRIIISKPLYVALAQRK 381
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G++ P + + F G + V ++ Y +V+ + + A+ L
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDAITRRSLGYAYVNFQQPNDAERALDTL 80
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N VN KP +I S++ P+ + +F+ NL + + + F +G ++ C I
Sbjct: 81 NFDPVNGKPCRI--MWSQRDPSLRRSGVGNIFIKNLEKDIDNKAIYDTFSAFGNILSCKI 138
Query: 147 V-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSR 185
+ Y FVH ++ + N+ I+++NGM++ GK + V SR
Sbjct: 139 ALDENGNSKGYAFVHFETQEAANRAIEKVNGMLLSGKKVFVGHFMSR 185
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N++ +R F +G + V+ + +GFV + EE A+ E+N
Sbjct: 305 LYVKNLDDVIDDAKLRQEFANFGTITSAKVMSDEKGISRGFGFVCFSSPEEATKAVTEMN 364
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
G+I+ KPL + A ++ +V +S
Sbjct: 365 GRIIISKPLYVALAQRKEDRKAQLAAQYVQRMS 397
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 89/199 (44%), Gaps = 32/199 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQKAVDEMN 252
Query: 91 GQIVNEKPL-------KIEAATSRKGP----------NTPTTKVFVGNLSDNTRAPEVRE 133
G+ +N K + K+E T K ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKCKFEQMKQDRITRYQVVNLYVKNLDDAIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR- 185
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Query: 186 VRQRPGVDEVVIGQKSVPV 204
RQ +E + + SVP
Sbjct: 373 ERQAYLTNEYMQRKASVPA 391
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 31/188 (16%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + + + +G V+ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNVLSCKVVCDENGSKGYGFVHFETREA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAP 129
AI+++NG +N++ + + SRK PN V++ N ++
Sbjct: 151 AERAIEKMNGIPLNDRKVFVGRFKSRKEREAELGARAKEFPN-----VYIKNFGEDMDDE 205
Query: 130 EVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQI 181
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 206 RLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGR 265
Query: 182 STSRVRQR 189
+ +V ++
Sbjct: 266 AQKKVERQ 273
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 82/166 (49%), Gaps = 20/166 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFVHMEND 79
P S T +++G+++P + ++ F + G ++ V + NY +V+ ++
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQHP 62
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKV---FVGNLSDNTRAPEVRELFV 136
++ A+ +N ++ KPL+I S++ P+ + V FV NL + + +
Sbjct: 63 KDAEHALDTMNFDVIKGKPLRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS 120
Query: 137 PYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
+G V+ C +V + YGFVH ++ + + I+++NG+ ++ +
Sbjct: 121 AFGNVLSCKVVCDENGSKGYGFVHFETREAAERAIEKMNGIPLNDR 166
>gi|72057573|ref|XP_792521.1| PREDICTED: RNA-binding protein lark-like isoform 2
[Strongylocentrotus purpuratus]
Length = 247
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN+ G + + ++ LF G+VVECDV+KNYGFVHM EE A+ +L G +
Sbjct: 4 KLFVGNLPQGCTNDDLKTLFATIGQVVECDVLKNYGFVHMSTIEEALEAVSKLGGHRLYG 63
Query: 97 KPLKIEAATS 106
++++ +TS
Sbjct: 64 NAIRVQHSTS 73
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 174
K+FVGNL +++ LF G VVECD+++NYGFVH+ + + + + +L G + G
Sbjct: 4 KLFVGNLPQGCTNDDLKTLFATIGQVVECDVLKNYGFVHMSTIEEALEAVSKLGGHRLYG 63
Query: 175 KPMKVQISTSRVRQRP 190
++VQ STS RQ P
Sbjct: 64 NAIRVQHSTSGERQEP 79
>gi|2443390|dbj|BAA22411.1| Ps16 protein [Triticum aestivum]
Length = 293
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 24/177 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKV--------VECDVVKNYGFVHMENDEEGRTAIKE 88
K+++GN+ E + LFE+ G V E D + +GFV M EE A++
Sbjct: 116 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 175
Query: 89 LNGQIVNEKPLKIEAATSRKG-------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
+ VN + L + A R + + +++VGNL + ELF +G V
Sbjct: 176 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 235
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
V+ +V R +GFV + S P+++ I L+G ++G+ ++V ++ R +R
Sbjct: 236 VDARVVYDRDTGRSRGFGFVTMASQPELDDAIAALDGQSLEGRALRVNVAEERPPRR 292
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMEND 79
P S +F+I++GN+ + LF ++GKVV+ VV + +GFV M +
Sbjct: 201 PPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 260
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSR 107
E AI L+GQ + + L++ A R
Sbjct: 261 PELDDAIAALDGQSLEGRALRVNVAEER 288
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------VGNLSDNTRAPEVRE 133
G+ +N K + + A + T + F V NL D+ +++
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLQK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 84/166 (50%), Gaps = 20/166 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFVHMEND 79
P S T +++G+++P + ++ F G ++ V + NY +V+ ++
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHP 62
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
++ A+ +N ++ KPL+I S++ P+ + +FV NL + + +
Sbjct: 63 KDAEHALDTMNFDVIKGKPLRI--MWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVS 120
Query: 137 PYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
+G ++ C++V + YGFVH ++ + + I+++NGM+++G+
Sbjct: 121 AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNGR 166
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 31/188 (16%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + + + +G ++ C+VV K YGFVH E E
Sbjct: 91 PSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAP 129
AI+++NG ++N + + + SRK PN V++ N ++
Sbjct: 151 AERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-----VYIKNFGEDMDDE 205
Query: 130 EVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQI 181
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 206 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 265
Query: 182 STSRVRQR 189
+ +V ++
Sbjct: 266 AQKKVERQ 273
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E ++ F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDDIDDERLQKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSD-----NTRAP 129
+IV KPL + A ++ T ++ ++ N RAP
Sbjct: 356 RIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAP 398
>gi|10801574|dbj|BAB16700.1| TIA-1 like protein [Bombyx mori]
Length = 285
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 18/166 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
+++GN++P + + LF G V C +++ Y F+ TA+ +N +
Sbjct: 10 LYVGNLDPSVTEVFLCTLFGXIGDVKGCKIIREPGNDPYAFLEFTCHTAAATALAAMNKR 69
Query: 93 IVNEKPLKIEAATS-RKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
+V +K +K+ ATS P T T+ +FVG+LS +RE F P+G + C IVR
Sbjct: 70 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 129
Query: 149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+ Y FV + D I+ +NG + + ++ ST +
Sbjct: 130 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 175
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 34/164 (20%)
Query: 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHME 77
N P + IF+G+++P ++R F +G++ C +V K Y FV
Sbjct: 86 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 78 NDEEGRTAIKELNGQIVNEKPLKI-------------EAATSRKGPNTPT---------- 114
+ AI+ +NGQ + + ++ E A S K PT
Sbjct: 146 KKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSP 205
Query: 115 --TKVFVGNLSDNTRAPEVRE-LFVPYGTVVECDIVRNYGFVHI 155
T V+ G + N E+ + F +G + + + R+ G+ I
Sbjct: 206 TNTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRVFRDKGYAFI 249
>gi|194696360|gb|ACF82264.1| unknown [Zea mays]
gi|414869196|tpg|DAA47753.1| TPA: ribonucleoprotein [Zea mays]
Length = 275
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 26/169 (15%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----KNYG--FVHMENDEEGRTAIKEL 89
++ N+ + + +R LFE +G VV ++ KN G FV M ++EE A+ L
Sbjct: 72 RLVAQNIPWDCTADEMRALFESHGSVVGVELSMYSANKNRGLAFVTMGSEEEALAALTHL 131
Query: 90 NGQIVNEKPLKIEAATSRKG-PNTP------TTK--VFVGNLSDNTRAPEVRELFVPYGT 140
N I+N++ +K++ A RK P P T K VFVGNL+ R +RELF
Sbjct: 132 NSTILNDRKIKVDFARPRKKQPKQPAVVSDDTEKYVVFVGNLTWRVRNRHLRELFASAPG 191
Query: 141 VVECDIVRN---------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
VV +++ + Y FV S + I NG ++ G+P+ V
Sbjct: 192 VVSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKILMGRPINV 240
>gi|410914421|ref|XP_003970686.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0-like
[Takifugu rubripes]
Length = 300
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 23/150 (15%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+F+G +N T+ E +R FEKYG++ +C VV N +GF+ EE TA+
Sbjct: 7 KLFVGGLNVQTNDEGLRQYFEKYGQLSDCVVVMNNQLGRSRCFGFITYSTPEEADTAMA- 65
Query: 89 LNGQIVNEKPLKIEAATSRKGPNTP-----TTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
+ +V+ ++++ A +R+ + P K+FVG + D+ A + + F +G V +
Sbjct: 66 ASPHVVDGHNVELKRAVARQDADNPEVLANVKKIFVGGVQDHIEAQHLTDYFSQFGAVEK 125
Query: 144 CDIV--------RNYGFV-HIDSPDINKCI 164
+I+ R +GFV +D+ K +
Sbjct: 126 AEIISDKLTGKKRGFGFVFFVDTDSATKAV 155
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------VGNLSDNTRAPEVRE 133
G+ +N K + + A + T + F V NL D+ +++
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLQK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 84/166 (50%), Gaps = 20/166 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFVHMEND 79
P S T +++G+++P + ++ F G ++ V + NY +V+ ++
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHP 62
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
++ A+ +N ++ KPL+I S++ P+ + +FV NL + + +
Sbjct: 63 KDAEHALDTMNFDVIKGKPLRI--MWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVS 120
Query: 137 PYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
+G ++ C++V + YGFVH ++ + + I+++NGM+++G+
Sbjct: 121 AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNGR 166
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 31/188 (16%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + + + +G ++ C+VV K YGFVH E E
Sbjct: 91 PSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAP 129
AI+++NG ++N + + + SRK PN V++ N ++
Sbjct: 151 AERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-----VYIKNFGEDMDDE 205
Query: 130 EVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQI 181
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 206 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 265
Query: 182 STSRVRQR 189
+ +V ++
Sbjct: 266 AQKKVERQ 273
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ E ++ F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDDIDDERLQKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSD-----NTRAP 129
+IV KPL + A ++ T ++ ++ N RAP
Sbjct: 356 RIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAP 398
>gi|147801865|emb|CAN74982.1| hypothetical protein VITISV_007871 [Vitis vinifera]
Length = 1976
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 14/180 (7%)
Query: 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---KNYGFVHMENDEEGRTAIK 87
S V F +++GNV + + +F ++G ++C + +++ FV+ E+ R A +
Sbjct: 588 SEVHPFSLWVGNVGNSVTESDLLAVFSRFG-ALDCFISYSSRSFAFVYFRRGEDARAARE 646
Query: 88 ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 147
L G +V P+KIE A P P ++VG S +T E+ F+ +G + +
Sbjct: 647 ALQGMVVLGTPMKIEFAR----PAKPCKSLWVGGFSPSTTKGELENEFLKFGKIEDFKFF 702
Query: 148 --RNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV---QISTSRVRQRPGVDEVVIGQKS 201
RN V ++ D ++ +K LNG + G ++V ++ TSR Q P + GQ S
Sbjct: 703 WDRNSALVEYVKLEDASQALKGLNGKQIGGAMIRVDFLRLQTSRREQGPEFLDTRDGQFS 762
>gi|380503877|ref|NP_001244114.1| polyadenylate-binding protein 5 [Equus caballus]
Length = 382
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
G IFI N++ + LF +G ++ C VV K Y +VH ++ AI
Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIW 163
Query: 88 ELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
+NG +N + + + AA R T VFV N D+ +++E+F YG
Sbjct: 164 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDMDDEKLKEIFSEYG 223
Query: 140 TVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQ 188
+ ++R+ +GFV ++ + K + +L+G +DGK + V + ++ +
Sbjct: 224 STESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 77/182 (42%), Gaps = 31/182 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N E ++ +F +YG V+ K +GFV E E + A+ +L+
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSEYGSTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 91 GQIVNEKPLKIEAA-----------------TSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++ K L + A ++ P +++ NL + +++E
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRAPGVPIYIKNLDETIDDEKLKE 320
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G++ ++ + +G V S + K + E+NG ++ KP+ V + +R
Sbjct: 321 EFSSFGSISRAKVMVEVGQGKGFGVVCFSSFEEATKAVDEMNGRIMGSKPLHVTLGQARR 380
Query: 187 RQ 188
R
Sbjct: 381 RW 382
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/156 (19%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 40 IGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKELNG 91
+G+++P + +++ F G + + ++ YG+V+ + A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 QIVNEKPLKIEAAT-SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 147
++N KP ++ + + + +F+ NL + + LF +G ++ C +V
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 ---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
+ Y +VH DS N+ I +NG+ ++ + + V
Sbjct: 142 NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>gi|50305507|ref|XP_452713.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641846|emb|CAH01564.1| KLLA0C11495p [Kluyveromyces lactis]
Length = 445
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVEC--------DVVKNYGFVHMENDEEGRTAIKEL 89
IF+G ++ E ++ FE G V+ D + YG+V E+ AIKE+
Sbjct: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
Query: 90 NGQIVNEKPLKIEAATSRKG--------------PNTPTTKVFVGNLSDNTRAPEVRELF 135
+G+ ++ +P+ + +TS+ P+ P+ +F+GNLS + E+F
Sbjct: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
Query: 136 VPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182
YG +V E + + +G+V S D K + L G ++ +P+++ S
Sbjct: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 15/108 (13%)
Query: 102 EAATSRKGPNT-----PTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC--------DIVR 148
E + K P T P T +FVG LS + ++ F P G V+ D R
Sbjct: 179 EEKSESKKPKTELAGEPAT-IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSR 237
Query: 149 NYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
YG+V D K IKE++G +DG+P+ +STS+ P D
Sbjct: 238 GYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRA 285
>gi|198422488|ref|XP_002121866.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4
(inducible form) [Ciona intestinalis]
Length = 270
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 21/168 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C V K YGFVH E +E
Sbjct: 92 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVSCNENGSKGYGFVHFETEEA 151
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
G AI+++NG ++N+K + + +R G T V++ N D ++ +
Sbjct: 152 GIRAIEKVNGMLLNDKKVFVGKFLTRSERIKKMGERVRQFTNVYIKNFGDKYDEKTLQVM 211
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDG 174
F YG V ++R+ +GFV DS + ++ +NG ++G
Sbjct: 212 FEKYGVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNGQEIEG 259
>gi|475720|gb|AAA18380.1| RNA-binding protein 3 [Arabidopsis thaliana]
Length = 162
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 24/155 (15%)
Query: 55 LFEKYGKV--------VECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106
LFE+ G V E D + +GFV M + +E TA+++ N +N + L + A
Sbjct: 2 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAP 61
Query: 107 R-----KGPNT--PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYG 151
R + P P +V+VGNL + + +LF +G VVE +V R +G
Sbjct: 62 RGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFG 121
Query: 152 FVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSR 185
FV + D ++N+ I L+G ++G+ ++V ++ R
Sbjct: 122 FVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 156
Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
F++++GN+ + LF ++GKVVE VV + +GFV M + +E AI
Sbjct: 76 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 135
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ + + +++ A R
Sbjct: 136 SALDGQNLEGRAIRVNVAEER 156
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 22/164 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ G + I F +G ++ C V K YGFVH E +E
Sbjct: 82 PSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNSKGYGFVHFETEE 141
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
+I +NG ++N K + + RK T V+V N +++ +++E
Sbjct: 142 AANMSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKE 201
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNG 169
F PYG + ++ + +GFV ++ + + ++ LNG
Sbjct: 202 FFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNG 245
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 33/181 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N E ++ FE YGK+ V+ K +GFV E E A++ LN
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALN 244
Query: 91 GQIVNE-KPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G+ + E K L K E ++ + ++V NL D +R
Sbjct: 245 GKDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGVNLYVKNLDDTIDDERLR 304
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSPDINKC-IKELNGMMVDGKPMKVQISTS 184
+ F YGT+ ++ + +GFV SP+ C + ELNG ++ KP+ V ++
Sbjct: 305 KDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQR 364
Query: 185 R 185
+
Sbjct: 365 K 365
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 24/147 (16%)
Query: 55 LFEKY---GKVVECDVVKN--------YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103
LFEK+ G V+ V ++ Y +V+ + + A+ +N ++ KP++I
Sbjct: 18 LFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLIRNKPIRI-- 75
Query: 104 ATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFV 153
S++ P+ + VF+ NL + + F +G ++ C + + YGFV
Sbjct: 76 MWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNSKGYGFV 135
Query: 154 HIDSPDI-NKCIKELNGMMVDGKPMKV 179
H ++ + N I +NGM+++GK + V
Sbjct: 136 HFETEEAANMSIDRVNGMLLNGKKVYV 162
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRT 84
SV +++ N++ E +R F YG + V+ K +GFV + E
Sbjct: 283 SVFGVNLYVKNLDDTIDDERLRKDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATC 342
Query: 85 AIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
A+ ELNG+++ KPL + A ++ ++ +++ R ++ ++F P T
Sbjct: 343 AVTELNGRVIGSKPLYVALAQRKEERKAHLASQYMRHMT-GMRMQQLGQMFQPNTT 397
>gi|241701254|ref|XP_002411916.1| RNA binding motif-containing protein, putative [Ixodes scapularis]
gi|215504865|gb|EEC14359.1| RNA binding motif-containing protein, putative [Ixodes scapularis]
Length = 81
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+++G++ G + +F KYGKV ECD+VKNY FVHM N++E + AI L+
Sbjct: 5 KLYVGSLPEGCDNASLEAIFAKYGKVDECDIVKNYAFVHMANEDEAKLAIDALHNSEFMG 64
Query: 97 KPLKIEAATSRKGP 110
+ +EA+ S+ P
Sbjct: 65 SKITVEASHSKVRP 78
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 172
+TK++VG+L + + +F YG V ECDIV+NY FVH+ + D K I L+
Sbjct: 3 STKLYVGSLPEGCDNASLEAIFAKYGKVDECDIVKNYAFVHMANEDEAKLAIDALHNSEF 62
Query: 173 DGKPMKVQISTSRVRQRPG 191
G + V+ S S+VR +PG
Sbjct: 63 MGSKITVEASHSKVRPKPG 81
>gi|390342772|ref|XP_003725734.1| PREDICTED: RNA-binding protein lark-like [Strongylocentrotus
purpuratus]
Length = 235
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN+ G + + ++ LF G+VVECDV+KNYGFVHM EE A+ +L G +
Sbjct: 4 KLFVGNLPQGCTNDDLKTLFATIGQVVECDVLKNYGFVHMSTIEEALEAVSKLGGHRLYG 63
Query: 97 KPLKIEAATS 106
++++ +TS
Sbjct: 64 NAIRVQHSTS 73
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 174
K+FVGNL +++ LF G VVECD+++NYGFVH+ + + + + +L G + G
Sbjct: 4 KLFVGNLPQGCTNDDLKTLFATIGQVVECDVLKNYGFVHMSTIEEALEAVSKLGGHRLYG 63
Query: 175 KPMKVQISTSRVRQRP 190
++VQ STS RQ P
Sbjct: 64 NAIRVQHSTSGERQEP 79
>gi|397478151|ref|XP_003810419.1| PREDICTED: polyadenylate-binding protein 5-like [Pan paniscus]
Length = 382
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
G IFI N++ + LF +G ++ C VV K Y +VH ++ AI
Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIW 163
Query: 88 ELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
+NG +N + + + AA R T VFV N+ D+ +++ELF YG
Sbjct: 164 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYG 223
Query: 140 TVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQ 188
++R+ +GFV ++ + K + +L+G +DGK + V + ++ +
Sbjct: 224 PTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 79/181 (43%), Gaps = 31/181 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N+ E ++ LF +YG V+ K +GFV E E + A+ +L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 91 GQIVNEKPLKIEAA-----------------TSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++ K L + A ++ P +++ NL + +++E
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G++ ++ + +G V S + +K + E+NG +V KP+ V + +R
Sbjct: 321 EFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEASKAVDEMNGRIVGSKPLHVTLGQARR 380
Query: 187 R 187
R
Sbjct: 381 R 381
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/156 (19%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 40 IGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKELNG 91
+G+++P + +++ F G + + ++ YG+V+ + A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 QIVNEKPLKIEAAT-SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 147
++N KP ++ + + + +F+ NL + + LF +G ++ C +V
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 ---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
+ Y +VH DS N+ I +NG+ ++ + + V
Sbjct: 142 NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>gi|340546031|gb|AEK51814.1| cytoplasmic poly(A) binding protein 1 [Heteronotia binoei]
Length = 177
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 42 NVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNGQIVN 95
N++ + + F +G ++ C VV K YGFVH E E AI+++NG ++N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 61
Query: 96 EKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
++ + + SRK T V++ N ++ +++LF +G + ++
Sbjct: 62 DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 121
Query: 148 ------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRP 190
+ +GFV + D K + E+NG ++GK + V + +V ++
Sbjct: 122 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 171
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 90 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 149
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVF 118
G+ +N K + + A + T + F
Sbjct: 150 GKELNGKQIYVGRAQKKVERQTEXKRKF 177
>gi|426252536|ref|XP_004019965.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 14 [Ovis aries]
Length = 671
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 23/172 (13%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL- 60
Query: 96 EKPLK-IEAATSRKGPNTPTTKVFVGN------LSDNTRAPEVRELFVPY-------GTV 141
+P + + SR P T K+F G + +R P L + +
Sbjct: 61 -RPGRALVGEMSRPRP-LNTWKIFGGQGALCLLATPLSRGPVTARLLIQILIEGLRDNLL 118
Query: 142 VECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
E D Y FVH++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 AEPD----YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 166
>gi|444720785|gb|ELW61557.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 232
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
IFI N+ + + F +G ++ C VV K YGFVH E E AI++++G
Sbjct: 56 IFIKNLGKSIDNKALYDTFPAFGNILSCKVVCDENGSKGYGFVHFETQEAVERAIEKMSG 115
Query: 92 QIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
++N+ + + SRK T V++ N ++ +++LF +G +
Sbjct: 116 MLLNDFKVFVGQFKSRKEREAELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALRV 175
Query: 145 DIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
++ + +GFV + D K + E+NG ++GK + + + +V Q+
Sbjct: 176 KVMTDESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQKKVEQQ 228
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 65/129 (50%), Gaps = 13/129 (10%)
Query: 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTR 127
Y +V + + A+ +N ++ KP++I S+ P+ + + +F+ NL +
Sbjct: 9 YTYVDFQKPTDMERALDTMNFDVIKGKPVRI--MWSQHDPSLHKSEVSNIFIKNLGKSID 66
Query: 128 APEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMKV 179
+ + F +G ++ C +V + YGFVH ++ + + + I++++GM++ D K
Sbjct: 67 NKALYDTFPAFGNILSCKVVCDENGSKGYGFVHFETQEAVERAIEKMSGMLLNDFKVFVG 126
Query: 180 QISTSRVRQ 188
Q + + R+
Sbjct: 127 QFKSRKERE 135
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N+ + + F +G ++ C V + +GFVH E E
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
+ AI +NG ++N++ + + SR+ T ++V NL + +++L
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G ++ ++R+ +GFV+ + + K + +NG V G+ + + RV
Sbjct: 211 FSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N+ + ++ LF ++GK++ V+++ +GFV+ E EE + A+ +N
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 91 GQIV-----------------NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ V NE + E + ++V NL D+ ++R+
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F PYG + ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ + +R F YG + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV KPL + A ++ T ++ LS
Sbjct: 356 RIVGTKPLYVALAQRKEERKAILTNQYMQRLS 387
>gi|197097448|ref|NP_001126434.1| polyadenylate-binding protein 5 [Pongo abelii]
gi|55731438|emb|CAH92432.1| hypothetical protein [Pongo abelii]
Length = 382
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
G IFI N++ + LF +G ++ C VV K Y +VH ++ AI
Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGDILSCKVVCDDNGSKGYAYVHFDSLAAANRAIW 163
Query: 88 ELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
+NG +N + + + AA R T VFV N+ D+ +++ELF YG
Sbjct: 164 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYG 223
Query: 140 TVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQ 188
++R+ +GFV ++ + K + +L+G +DGK + V + ++ +
Sbjct: 224 PTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 31/181 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N+ E ++ LF +YG V+ K +GFV E E + A+ +L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 91 GQIVNEKPLKIEAA-----------------TSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++ K L + A ++ P +++ NL + +++E
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G++ ++ + +G V S + K + E+NG +V KP+ V + +R
Sbjct: 321 EFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 380
Query: 187 R 187
R
Sbjct: 381 R 381
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/156 (19%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 40 IGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKELNG 91
+G+++P + +++ F G + + ++ YG+V+ + A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 QIVNEKPLKIEAAT-SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 147
++N KP ++ + + + +F+ NL + + LF +G ++ C +V
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGDILSCKVVCDD 141
Query: 148 ---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
+ Y +VH DS N+ I +NG+ ++ + + V
Sbjct: 142 NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>gi|18201888|ref|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens]
gi|115392093|ref|NP_001065269.1| polyadenylate-binding protein 5 [Pan troglodytes]
gi|332239776|ref|XP_003269075.1| PREDICTED: polyadenylate-binding protein 5 [Nomascus leucogenys]
gi|426396593|ref|XP_004064521.1| PREDICTED: polyadenylate-binding protein 5-like [Gorilla gorilla
gorilla]
gi|28201851|sp|Q96DU9.1|PABP5_HUMAN RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502886|sp|P60047.1|PABP5_GORGO RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502887|sp|P60048.1|PABP5_HYLLA RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502888|sp|P60049.1|PABP5_PANTR RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502889|sp|P60050.1|PABP5_PONPY RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571705|emb|CAC42817.1| Poly(A)-binding protein cytoplasmic 5 [Gorilla gorilla]
gi|14571711|emb|CAC42818.1| Poly(A)-binding protein cytoplasmic 5 [Hylobates lar]
gi|14571756|emb|CAC42822.1| Poly(A)-binding protein cytoplasmic 5 [Pongo pygmaeus]
gi|14571764|emb|CAC42823.1| poly(A)-binding protein cytoplasmic 5 [Pan troglodytes]
gi|14572616|emb|CAC42826.1| Poly(A)-binding protein cytoplasmic 5 [Homo sapiens]
gi|38649270|gb|AAH63113.1| Poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|119623181|gb|EAX02776.1| poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|158261233|dbj|BAF82794.1| unnamed protein product [Homo sapiens]
gi|208968659|dbj|BAG74168.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|312151110|gb|ADQ32067.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|410208314|gb|JAA01376.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
gi|410305648|gb|JAA31424.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
Length = 382
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
G IFI N++ + LF +G ++ C VV K Y +VH ++ AI
Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIW 163
Query: 88 ELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
+NG +N + + + AA R T VFV N+ D+ +++ELF YG
Sbjct: 164 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYG 223
Query: 140 TVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQ 188
++R+ +GFV ++ + K + +L+G +DGK + V + ++ +
Sbjct: 224 PTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 31/181 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N+ E ++ LF +YG V+ K +GFV E E + A+ +L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 91 GQIVNEKPLKIEAA-----------------TSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++ K L + A ++ P +++ NL + +++E
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G++ ++ + +G V S + K + E+NG +V KP+ V + +R
Sbjct: 321 EFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 380
Query: 187 R 187
R
Sbjct: 381 R 381
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/156 (19%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 40 IGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKELNG 91
+G+++P + +++ F G + + ++ YG+V+ + A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 QIVNEKPLKIEAAT-SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 147
++N KP ++ + + + +F+ NL + + LF +G ++ C +V
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 ---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
+ Y +VH DS N+ I +NG+ ++ + + V
Sbjct: 142 NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>gi|113461967|ref|NP_001038193.1| polyadenylate-binding protein 5 [Macaca mulatta]
gi|402910717|ref|XP_003918003.1| PREDICTED: polyadenylate-binding protein 5 [Papio anubis]
gi|50400917|sp|Q7JGR2.1|PABP5_MACMU RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571725|emb|CAC42819.1| Poly(A)-binding protein cytoplasmic 5 [Macaca mulatta]
gi|14571737|emb|CAC42821.1| Poly(A)-binding protein cytoplasmic 5 [Miopithecus talapoin]
gi|90082100|dbj|BAE90331.1| unnamed protein product [Macaca fascicularis]
gi|355704969|gb|EHH30894.1| Polyadenylate-binding protein 5 [Macaca mulatta]
gi|355757521|gb|EHH61046.1| Polyadenylate-binding protein 5 [Macaca fascicularis]
Length = 382
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
G IFI N++ + LF +G ++ C VV K Y +VH ++ AI
Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIW 163
Query: 88 ELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
+NG +N + + + AA R T VFV N+ D+ +++ELF YG
Sbjct: 164 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYG 223
Query: 140 TVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQ 188
++R+ +GFV ++ + K + +L+G +DGK + V + ++ +
Sbjct: 224 PTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 31/181 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F+ N+ E ++ LF +YG V+ K +GFV E E + A+ +L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 91 GQIVNEKPLKIEAA-----------------TSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ ++ K L + A ++ P +++ NL + +++E
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G++ ++ + +G V S + K + E+NG +V KP+ V + +R
Sbjct: 321 EFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQARR 380
Query: 187 R 187
R
Sbjct: 381 R 381
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/156 (19%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 40 IGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKELNG 91
+G+++P + +++ F G + + ++ YG+V+ + A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 QIVNEKPLKIEAAT-SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 147
++N KP ++ + + + +F+ NL + + LF +G ++ C +V
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 ---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
+ Y +VH DS N+ I +NG+ ++ + + V
Sbjct: 142 NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>gi|355784464|gb|EHH65315.1| Polyadenylate-binding protein 1-like protein [Macaca fascicularis]
Length = 635
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/183 (23%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G IFI N+ + + F +G ++ C VV + +GFVH E E
Sbjct: 103 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEA 162
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
+ AI +NG ++N++ + + SR+ T ++V NL + +++L
Sbjct: 163 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDL 222
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G ++ ++R+ +GFV+ + + K + +NG V G+ + + RV
Sbjct: 223 FSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRV 282
Query: 187 RQR 189
++
Sbjct: 283 ERQ 285
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 40/192 (20%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N+ + ++ LF ++GK++ V+++ +GFV+ E EE + A+ +N
Sbjct: 205 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 264
Query: 91 GQIV-----------------NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ V NE + E + ++V NL D+ ++R+
Sbjct: 265 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 324
Query: 134 LFVPYGTVVECDIV-RNYGF------VHIDSP---------DINKCIKELNGMMVDGKPM 177
F PYG + V Y F V SP + K + E+NG +V KP+
Sbjct: 325 EFSPYGVITSAKGVGAGYPFWGSADPVGTCSPSAALSGLKEEATKAVTEMNGRIVGTKPL 384
Query: 178 KVQISTSRVRQR 189
V ++ + ++
Sbjct: 385 YVALAQRKEERK 396
>gi|17531965|ref|NP_495121.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
gi|373219010|emb|CCD65015.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
Length = 408
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 31/170 (18%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
F +F+G+++ + +R F+ +G V + V+ K YGFV EE AI+
Sbjct: 135 FHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIE 194
Query: 88 ELNGQIVNEKPLKIEAATSRKG-------------------PNTPTTKVFVGNLSDNTRA 128
++NGQ + + ++ AT + G + T V+VGN++ T
Sbjct: 195 QMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTE- 253
Query: 129 PEVRELFVPYGTVVECDI--VRNYGFVHIDSPD-INKCIKELNGMMVDGK 175
E+R+ F +G + E I ++ Y FV D+ D K I ++N V G+
Sbjct: 254 DEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQ 303
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,241,197,285
Number of Sequences: 23463169
Number of extensions: 132221213
Number of successful extensions: 383171
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2836
Number of HSP's successfully gapped in prelim test: 14150
Number of HSP's that attempted gapping in prelim test: 342623
Number of HSP's gapped (non-prelim): 37266
length of query: 207
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 71
effective length of database: 9,168,204,383
effective search space: 650942511193
effective search space used: 650942511193
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 73 (32.7 bits)