BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3721
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94901|LARK_DROME RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1
SV=1
Length = 352
Score = 233 bits (593), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 113/169 (66%), Positives = 136/169 (80%), Gaps = 4/169 (2%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
MPG GTFK+FIGN++ T +R LFEKYG VVECDVVKNYGFVHME +++GR AI
Sbjct: 1 MPG---AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAI 57
Query: 87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
+ LNG +NE +K+EAA SR+ PNTPTTK+FVGNL+D TRAPEVRELF YGTVVECDI
Sbjct: 58 QNLNGYTLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDI 117
Query: 147 VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
VRNYGFVH+D D+ IKELNG +VDG+P+KVQ+STSRVR +PG+ +
Sbjct: 118 VRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGD 166
>sp|Q6IQ97|RBM41_DANRE RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1
Length = 419
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 103/159 (64%), Gaps = 4/159 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
KIF+GN++P T+ E IR LF +YGK+ ECD+VKN+GFVHM++ E AI+ L+ ++N
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +E + KG +TK+ VGN+S + E+R F YG VVECDIV++Y FVH++
Sbjct: 63 MAMNVEMS---KGKPKTSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHME 119
Query: 157 S-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
D + I L+ GK M V++STSR+R PG+ E
Sbjct: 120 RVEDAMEAISGLDNTAFQGKLMSVKLSTSRLRTAPGMGE 158
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1
Length = 364
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1
Length = 364
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1
Length = 359
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>sp|Q64LC9|RBM4B_RAT RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2
Length = 357
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>sp|Q8VE92|RBM4B_MOUSE RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=1 SV=1
Length = 357
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1
Length = 362
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 131 bits (329), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFVH+E+ AI+ L+ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
+ +EA+ K + +TK+ VGN+S E+R F YG V+ECDIV++Y FVH++
Sbjct: 63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119
Query: 157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
+ D + I+ L+ GK M VQ+STSR+R PG+
Sbjct: 120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
+ Y + +NI+ S T K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 55 LHHYKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
FVHME E+ AI+ L+ K + ++ +TSR
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>sp|Q96PK6|RBM14_HUMAN RNA-binding protein 14 OS=Homo sapiens GN=RBM14 PE=1 SV=2
Length = 669
Score = 106 bits (264), Expect = 1e-22, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 84.0 bits (206), Expect = 7e-16, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>sp|Q5RC41|RBM14_PONAB RNA-binding protein 14 OS=Pongo abelii GN=RBM14 PE=2 SV=1
Length = 669
Score = 106 bits (264), Expect = 1e-22, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 84.0 bits (206), Expect = 7e-16, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>sp|Q5EA36|RBM14_BOVIN RNA-binding protein 14 OS=Bos taurus GN=RBM14 PE=2 SV=1
Length = 669
Score = 105 bits (262), Expect = 2e-22, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ PG+
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL 157
Score = 83.6 bits (205), Expect = 9e-16, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>sp|Q8C2Q3|RBM14_MOUSE RNA-binding protein 14 OS=Mus musculus GN=Rbm14 PE=1 SV=1
Length = 669
Score = 103 bits (258), Expect = 7e-22, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 6/159 (3%)
Query: 37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIV 94
KIF+GNV+ T+ E + LF YG V+ C V+K + FVHM + AI+ L+G ++
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
+ L +E + R T K+FVGN+S + E+R LF G V+ECD+V++Y FVH
Sbjct: 62 PGRALVVEMSRPRP---LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118
Query: 155 ID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
++ D I +LNG V GK + V++ST ++ P +
Sbjct: 119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPAL 157
Score = 84.0 bits (206), Expect = 7e-16, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135
Query: 93 IVNEKPLKIEAAT--SRKGP 110
V K + +E +T +KGP
Sbjct: 136 EVKGKRINVELSTKGQKKGP 155
>sp|Q10667|RNP1_CAEEL RNA-binding protein rnp-1 OS=Caenorhabditis elegans GN=rnp-1 PE=2
SV=1
Length = 305
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%)
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDG 174
+K+FVGNL DN + +++++F P+ V ECDIV+NY FVHI+ D++ I L G +DG
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEEDDVDPIITRLTGYTIDG 62
Query: 175 KPMKVQISTSRVRQRPGV 192
K + ++ STS++R PG+
Sbjct: 63 KVVNIKKSTSKLRPTPGM 80
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
K+F+GN+ ++ +F+ + KV ECD+VKNY FVH+E D+ I L G ++
Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEEDDVDPI-ITRLTGYTIDG 62
Query: 97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPE 130
K + I+ +TS+ P SD R P+
Sbjct: 63 KVVNIKKSTSKLRPTPGMPNRCFRCQSDEHRTPQ 96
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ E + +F+ G V E D + +GFV M EE A++
Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115
Query: 89 LNGQIVNEKPLKIEAATSRKGPN-------TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
LNG ++ + L + A R P P+ +V+VGNL + + +LF +G V
Sbjct: 116 LNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKV 175
Query: 142 VECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
V +V R +GFV + S ++N I L+G +DG+ ++V ++ R R+
Sbjct: 176 VSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRR 231
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G+ I+I N++P + + F +G ++ C V + +
Sbjct: 109 CRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGF 168
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH EN+ + R AI+ ++G ++N++ + + S+K + T V+V N+
Sbjct: 169 GFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQ 228
Query: 125 NTRAPEVRELFVPYG----TVVECDI---VRNYGFVHI-DSPDINKCIKELNGMMVDGKP 176
T E ELF YG V+E D +R +GFV+ D K + ELN + G+
Sbjct: 229 ETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQK 288
Query: 177 MKV 179
+ V
Sbjct: 289 LYV 291
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGK----VVECDV---VKNYGFVHMENDEEGRTAIKELN 90
+++ N++ TS E LF KYGK V+E D ++ +GFV+ E+ A+ ELN
Sbjct: 221 VYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELN 280
Query: 91 -----GQIV------------NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E + EAA K +FV NL D+ +++E
Sbjct: 281 ELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKE 340
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++R+ +GFV +P + K I E N +V GKP+ V I+ +
Sbjct: 341 EFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400
Query: 186 VRQR 189
+R
Sbjct: 401 EVRR 404
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G + P S L+ +F G V V ++ Y +V+ + E G AI++L
Sbjct: 40 LYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQL 99
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P+ + +++ NL + E F +G ++ C +
Sbjct: 100 NYTLIKGKPCRI--MWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKV 157
Query: 147 V-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
R +GFVH ++ D I+ ++GM+++ + + V + S+ ++ ++EV
Sbjct: 158 ATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEV 214
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 24/179 (13%)
Query: 23 SCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KN 70
+CR M P G +FI N++ G + + F +G ++ C VV K
Sbjct: 80 ACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKG 139
Query: 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT----TKVFVGNLSDNT 126
+GFVH E E AI ++NG ++N + + + S K PT T VF NLS++
Sbjct: 140 FGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDV 199
Query: 127 RAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINKCIKE-LNGMMVDGKPM 177
+++EL YG + I+ + +GF + +S + K + E NG + GKP+
Sbjct: 200 GPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPI 258
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 87/176 (49%), Gaps = 30/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+F N++ + ++ L ++YG++ ++ K +GF + E+ E + ++ N
Sbjct: 190 VFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENEN 249
Query: 91 GQIVNEKPL-------KIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVRELFVPY 138
G+I + KP+ KIE K +T TK +++ N+ D+ ++RE+F +
Sbjct: 250 GKIFHGKPIYAGRAQKKIEREAELK--HTFETKYQGVNLYIKNIDDSIDNDKLREVFSQF 307
Query: 139 GTVVECDIVRN--------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
GT+ ++++ +GFV +PD + + E+NG M+ KP+ V ++ +
Sbjct: 308 GTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRK 363
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 83/173 (47%), Gaps = 22/173 (12%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G++ P S + + +F + G V V ++ Y +V+ N + A+ L
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTL 71
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N + K +I S++ P+ + VF+ NL + + F +G ++ C +
Sbjct: 72 NNTPIRGKACRI--MWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKV 129
Query: 147 V-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV-QISTSRVRQRP 190
V + +GFVH ++ + +K I ++NGMM++G+ + V +S+ R +P
Sbjct: 130 VTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQP 182
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI ++NG ++N++ + + SRK T V++ N D+ ++E+
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEM 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F YG + ++ + +GFV + D K + E+NG ++GK M V + +V
Sbjct: 211 FGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 31/179 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + E ++ +F KYG + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N K + K+E T RK ++ +V NL D +R+
Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F+P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++ +
Sbjct: 313 EFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
Score = 37.0 bits (84), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 159
P+ P ++VG+L + + E F P G ++ + R+ Y +V+ P D
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 160 INKCIKELNGMMVDGKPMKVQIS 182
+ + +N ++ G+P+++ S
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWS 87
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 28/184 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 132 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGY 191
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T ++V N++
Sbjct: 192 GFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINP 251
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDS-PDINKCIKELNGMMVDGK 175
E R LF YG V + R+ +GFV+ S D +K ++ELN G+
Sbjct: 252 EVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQ 311
Query: 176 PMKV 179
+ V
Sbjct: 312 NLYV 315
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 25/137 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
I++ N+NP + + R LFEKYG V + ++ +GFV+ + E+ A++EL
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQEL 303
Query: 90 NGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
N + + + L + EAA K +++ NL D ++R
Sbjct: 304 NEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLR 363
Query: 133 ELFVPYGTVVECDIVRN 149
+LF +G + ++R+
Sbjct: 364 QLFSEFGPITSAKVMRD 380
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDS-PDINKCI 164
+ ++VG L + + ELF G+V + R+ Y +V+ ++ D K +
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 165 KELNGMMVDGKPMKVQIS 182
+ELN ++ G+P ++ S
Sbjct: 120 EELNYTLIKGRPCRIMWS 137
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 29/177 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKEL 89
IF+G ++ E ++ FE G V+ V+ + YG+V EN AI+E+
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 90 NGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAPEVRELFVP 137
G+ ++ +P+ + +TS+ P+ P+ +F+GNLS N + ELF
Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAK 289
Query: 138 YGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
+G VV E + + +G+V + D K + L G +D +P+++ S+ R
Sbjct: 290 HGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 346
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N++ + + F +G ++ C V K Y
Sbjct: 131 CRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGY 190
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +NG ++NEK + + +K + T V+V N+++
Sbjct: 191 GFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINN 250
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E RELF +G V + R+ +GFV+ + + + + ELNG G+
Sbjct: 251 EVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQD 310
Query: 177 MKV 179
+ V
Sbjct: 311 LYV 313
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/221 (20%), Positives = 81/221 (36%), Gaps = 73/221 (33%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+N + E R LF K+G+V + ++ +GFV+ E A+ ELN
Sbjct: 243 VYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELN 302
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K +++ NL D+ ++R
Sbjct: 303 GKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRA 362
Query: 134 LFVPYGTVVECDIVRN-------------------------------------------- 149
+F YG + ++R+
Sbjct: 363 MFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRKLG 422
Query: 150 ----YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+GFV +P D K + E+N MVDGKP+ V ++ +
Sbjct: 423 KSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRK 463
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 24/177 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+GN+ + + + LFE+ G V E D + +GFV M + +E TA+++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 89 LNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
N +N + L + A R + P P +V+VGNL + + +LF +G V
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 270
Query: 142 VECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
VE +V R +GFV + D ++N+ I L+G ++G+ ++V ++ R +R
Sbjct: 271 VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRR 327
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAI 86
F++++GN+ + LF ++GKVVE VV + +GFV M + +E AI
Sbjct: 243 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 302
Query: 87 KELNGQIVNEKPLKIEAATSR 107
L+GQ + + +++ A R
Sbjct: 303 SALDGQNLEGRAIRVNVAEER 323
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P +GT +FI N++P + + F +GK++ C V K Y
Sbjct: 151 CRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGY 210
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH ++ E AI+ +NG ++N+K + + SR+ + T V++ NL
Sbjct: 211 GFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDT 270
Query: 125 NTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKP 176
E +LF +G + +V R +GFV+ + + K + ELN GK
Sbjct: 271 EITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKK 330
Query: 177 MKV 179
+ V
Sbjct: 331 LYV 333
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 22/188 (11%)
Query: 21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YG 72
N S P ++ + +++G ++P + ++ LF G V V ++ Y
Sbjct: 65 NASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYA 124
Query: 73 FVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAP 129
+V+ N E+G A+ ELN ++ +P +I S++ P+ T VF+ NL
Sbjct: 125 YVNFHNMEDGEKALDELNYTLIKGRPCRI--MWSQRDPSLRKMGTGNVFIKNLDPAIDNK 182
Query: 130 EVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181
+ + F +G ++ C + + YGFVH DS N I+ +NGM+++ K + V
Sbjct: 183 ALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH 242
Query: 182 STSRVRQR 189
SR R+R
Sbjct: 243 HVSR-RER 249
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 42/189 (22%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N++ + + LF ++G++ +VK+ +GFV+ N E + A+ ELN
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 91 GQIVNEKPL----------------------KIEAATSRKGPNTPTTKVFVGNLSDNTRA 128
+ K L K+E +G N +F+ NL D
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVN-----LFIKNLQDEVDD 377
Query: 129 PEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQ 180
++ F +GT+ I+ + +GFV +P + NK + E+N M+ GKP+ V
Sbjct: 378 ERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 437
Query: 181 ISTSRVRQR 189
++ + +R
Sbjct: 438 LAQRKEVRR 446
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 25/113 (22%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
R++Q +L K+++Y +FI N+ E ++ F +G +
Sbjct: 349 RYEQMKLEKMNKYQG------------------VNLFIKNLQDEVDDERLKAEFSAFGTI 390
Query: 63 VECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
++ K +GFV EE A+ E+N +++ KPL + A ++
Sbjct: 391 TSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKE 443
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 71.6 bits (174), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G +FI N++ + + F +G ++ C VV K Y FVH E E
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N + ++EL
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++R+ +GFV + D NK ++E+NG + GK + V + +V
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF ++GK + V+ K +GFV E E+ A++E+N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ ++ +K ++ +A RK ++ ++ NL D ++R+
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRV 186
F P+G++ ++ + +GFV SP+ K + E+NG +V KP+ V ++ +
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Query: 187 RQRPGVD----EVVIGQKSVPVQAL 207
++ + + V G +++P A+
Sbjct: 373 ERKAHLTNQYMQRVAGMRALPANAI 397
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 3 RFDQQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 62
+F+Q + ++SRY ++I N++ E +R F +G +
Sbjct: 279 KFEQLKQERISRYQG------------------VNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 63 VECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
V+ K +GFV + EE A+ E+NG+IV KPL + A ++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Score = 34.3 bits (77), Expect = 0.68, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 163
P ++VG+L + + E F P G V+ + R+ Y +V+ P D +
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 164 IKELNGMMVDGKPMKVQISTSRVRQR-PGVDEVVIGQ--KSVPVQAL 207
+ +N ++ GKP+++ S R GV V I KS+ +AL
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAL 115
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
++ NV+P + + LF K+GK+ C + K +GFV+ E+ E + A+ EL+
Sbjct: 229 VYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELH 288
Query: 91 -----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E+ L+ EAA + K +++ N+ ++ +RE
Sbjct: 289 DSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLRE 348
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+G + C I+ R +GFV +P + NK + E+NG M+D +P+ V ++ +
Sbjct: 349 EFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRK 408
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 26/174 (14%)
Query: 21 NISCRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN----- 70
N CR M P G IFI N++ G + + F +G ++ C V N
Sbjct: 115 NRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETGSL 174
Query: 71 -YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNL 122
YGFVH E E AIK +NG ++N+K + + RK T V+ N+
Sbjct: 175 GYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNV 234
Query: 123 SDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELN 168
E +LF +G + C + R+ +GFV+ D + K + EL+
Sbjct: 235 DPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELH 288
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G +FI N++ + + F +G ++ C VV + YGFVH E E
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+ +NG ++N++ + + SR+ T V++ N ++ +RE+
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ R +GFV+ + + K + E+NG V+G+ + V + R+
Sbjct: 211 FSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + +R +F +G + V+ + +GFV+ N EE + A+ E+N
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ VN +K ++ ++ RK ++ +V NL D +R+
Sbjct: 253 GKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F+PYGT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G + +R F YG + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV+ KPL + A ++ T ++ L+
Sbjct: 356 RIVSTKPLYVALAQRKEERKAILTNQYMQRLA 387
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/99 (19%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 159
G P +++G+L + + E F P G ++ + R+ Y +++ P D
Sbjct: 5 GAGYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPAD 64
Query: 160 INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIG 198
+ + +N ++ G+P+++ S ++ PG+ + +G
Sbjct: 65 AERALDTMNFEVIKGRPIRIMWS----QRDPGLRKSGVG 99
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G +FI N++ + + F +G ++ C VV + YGFVH E E
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+ +NG ++N++ + + SR+ T V++ N ++ +RE+
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ R +GFV+ + + K + E+NG V+G+ + V + R+
Sbjct: 211 FSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + +R +F +G + V+ + +GFV+ N EE + A+ E+N
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ VN +K ++ + RK ++ +V NL D +R+
Sbjct: 253 GKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F PYGT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G + +R F YG + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV+ KPL + A ++ T ++ L+
Sbjct: 356 RIVSTKPLYVALAQRKEERKAILTNQYMQRLA 387
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 159
G P ++VG+L + + E F P G ++ + R+ Y +++ P D
Sbjct: 5 GAGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPAD 64
Query: 160 INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIG 198
+ + +N ++ G+P+++ S ++ PG+ + +G
Sbjct: 65 AERALDTMNFEVIKGRPIRIMWS----QRDPGLRKSGVG 99
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 20/172 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G IFI N++ + + F +G +V C V K YGFV N+E
Sbjct: 116 PSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEE 175
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVRELF 135
+ AI++LNG ++N+K + + R+ T T V+V NL+++T +++ F
Sbjct: 176 SAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAF 235
Query: 136 VPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKV 179
YG + ++++ +GFV+ + + D + ++ LNG D K V
Sbjct: 236 GEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYV 287
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 89/184 (48%), Gaps = 32/184 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N+ T+ + ++ F +YGK+ V+K+ +GFV+ EN ++ A++ LN
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 91 GQIVNEKPLKIEAATSRKGPNTP-----------------TTKVFVGNLSDNTRAPEVRE 133
G ++K + A + T ++ ++V NL + +++E
Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 336
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+F P+GTV ++R+ GFV +P + + + +L+G M++ KP+ V I+ +
Sbjct: 337 IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK 396
Query: 186 VRQR 189
+R
Sbjct: 397 EDRR 400
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 81/168 (48%), Gaps = 21/168 (12%)
Query: 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEG 82
+ G +++G+++ + + F + G VV V ++ YG+V+ N ++
Sbjct: 31 TQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDA 90
Query: 83 RTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYG 139
AI+ELN + KP+++ S + P+ + +F+ NL ++ + + F +G
Sbjct: 91 ARAIQELNYIPLYGKPIRV--MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG 148
Query: 140 TVVECDIV-------RNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV 179
+V C + + YGFV + + K I++LNGM+++ K + V
Sbjct: 149 NIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 88 ELNGQIVNEKPLKIEAATSRKGPNTPT----TKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
+L GQ N + +A + G T T T ++VG+L N ++ + F GTVV
Sbjct: 5 QLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVT 64
Query: 144 CDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
+ R+ YG+V+ +P D + I+ELN + + GKP++V S
Sbjct: 65 VRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYS 112
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAI 86
G +F+ N+ + +++ +F+K+G +V C V + YGFV E ++ AI
Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAI 169
Query: 87 KELNGQIVNEKPL---KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
+ LN IV +K + K T R P T +++ NL + +RE F +G +V
Sbjct: 170 QTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVS 229
Query: 144 CDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
I R Y FV+ D+P D + + +NG K + V
Sbjct: 230 LAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYV 273
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
+++ N++ S +L+R F ++GK+V + K+ Y FV+ +N E+ R A + +N
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 91 GQIVNEKPLKIEAATSRKGPN-----------------TPTTKVFVGNLSDNTRAPEVRE 133
G K L + A + + ++V N++ E+R+
Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRK 322
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPDIN-KCIKELNGMMVDGKPMKVQISTSR 185
F GT+ ++ + +GFV +P+ +K +G M GKP+ V I+ +
Sbjct: 323 HFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKK 382
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVE----CD---VVKNYGFVHMENDEEGRTAIKELN 90
I++ NVN + E +R F + G + CD K +GFV EE A+K +
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 91 GQIVNEKPLKIEAATSRK 108
GQ+ + KPL + A ++
Sbjct: 366 GQMFHGKPLYVAIAQKKE 383
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ ++EL
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 159
P+ P ++VG+L + + E F P G ++ + R+ Y +V+ P D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 160 INKCIKELNGMMVDGKPMKVQIS 182
+ + +N ++ GKP+++ S
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWS 87
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ ++EL
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
Score = 37.7 bits (86), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 159
P+ P ++VG+L + + E F P G ++ + R+ Y +V+ P D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 160 INKCIKELNGMMVDGKPMKVQIS 182
+ + +N ++ GKP+++ S
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWS 87
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 32/180 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELN 90
+++ N+N T+ E + LF K+G +V + +K +GFV+ E E+ A++ LN
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+N + L + EA K +FV NL D+ ++ E
Sbjct: 281 DSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEE 340
Query: 134 LFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F PYGT+ ++R +GFV +P + K I E N +V GKP+ V I+ +
Sbjct: 341 EFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G+ IFI N++P + + F +G ++ + K +
Sbjct: 109 CRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGF 168
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSD 124
GFVH E + + AI LNG ++N + + + SRK ++ T ++V N++
Sbjct: 169 GFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINS 228
Query: 125 NTRAPEVRELFVPYGTVVECDI-------VRNYGFVHID-SPDINKCIKELNGMMVDGKP 176
T + +ELF +G +V + ++ +GFV+ + D K ++ LN ++G+
Sbjct: 229 ETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEK 288
Query: 177 MKV 179
+ V
Sbjct: 289 LYV 291
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI ++NG ++N++ + + SRK T V++ N ++ ++E
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEW 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F YG + ++ R +GFV + D K + ++NG ++GK + V + +V
Sbjct: 211 FGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ F +YG + V+ + +GFV E E+ + A+ ++N
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMN 252
Query: 91 GQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ +N K + K+E T RK ++ +V NL D +R+
Sbjct: 253 GKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+G++ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
Score = 37.7 bits (86), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 159
P+ P ++VG+L + + E F P G ++ + R+ Y +V+ P D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 160 INKCIKELNGMMVDGKPMKVQIS 182
+ + +N ++ GKP+++ S
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWS 87
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 136 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGY 195
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E DE AIK +N ++NEK + + +K + T ++V N+S
Sbjct: 196 GFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISL 255
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDI-NKCIKELNGMMVDGKP 176
E R+LF YG V + R+ +GFV+ + + K ++ELNG G+
Sbjct: 256 EATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQD 315
Query: 177 MKV 179
+ V
Sbjct: 316 LYV 318
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 77/225 (34%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ + E R LF KYG V + ++ +GFV+ E A++ELN
Sbjct: 248 IYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELN 307
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
G+ + L + EAA K +++ NL+D+ ++R+
Sbjct: 308 GKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLRQ 367
Query: 134 LFVPYGTVVECDIVRN-------------------------------------------- 149
+F YG + ++R+
Sbjct: 368 MFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTEKKGD 427
Query: 150 --------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
+GFV +P D K + E+N M++GKP+ V ++ +
Sbjct: 428 RRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRK 472
Score = 30.8 bits (68), Expect = 6.6, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDS-PDINKCI 164
+ ++VG L + + ELF G+V + R+ Y +V+ +S D K +
Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKAL 123
Query: 165 KELNGMMVDGKPMKVQIS 182
+ELN ++ G+P ++ S
Sbjct: 124 EELNYTLIKGRPCRIMWS 141
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
PG G +FI N++ + + F +G ++ C VV + YGFVH E E
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVREL 134
AI+ +NG ++N++ + + SR+ T V++ N ++ ++E+
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEI 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ R +GFV+ + + K + E+NG V+G+ + V + R+
Sbjct: 211 FSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRI 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N + ++ +F +G + V+ + +GFV+ N EE + A+ E+N
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMN 252
Query: 91 GQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRE 133
G+ VN +K ++ + RK ++ +V NL D +R+
Sbjct: 253 GKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F PYGT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G + +R F YG + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLS 123
+IV+ KPL + A ++ T ++ L+
Sbjct: 356 RIVSTKPLYVALAQRKEERKAILTNQYMQRLA 387
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 163
P +++G+L + + E F P G ++ + R+ Y +++ P D +
Sbjct: 9 PLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERA 68
Query: 164 IKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIG 198
+ +N ++ G+P+++ S ++ PG+ + +G
Sbjct: 69 LDTMNFEVIKGRPIRIMWS----QRDPGLRKSGVG 99
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
Score = 37.7 bits (86), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 159
P+ P ++VG+L + + E F P G ++ + R+ Y +V+ P D
Sbjct: 5 APSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 160 INKCIKELNGMMVDGKPMKVQIS 182
+ + +N ++ GKP+++ S
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWS 87
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
Score = 37.4 bits (85), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 159
P+ P ++VG+L + + E F P G ++ + R+ Y +V+ P D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 160 INKCIKELNGMMVDGKPMKVQIS 182
+ + +N ++ GKP+++ S
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWS 87
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
AI+++NG ++N++ + + SRK T V++ N ++ +++L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 135 FVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRV 186
F +G + ++ + +GFV + D K + E+NG ++GK + V + +V
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 187 RQR 189
++
Sbjct: 271 ERQ 273
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNLSDNTRAPEVRE 133
G+ +N K + + A + T + ++V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRK 108
+IV KPL + A ++
Sbjct: 356 RIVATKPLYVALAQRKE 372
Score = 37.4 bits (85), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 159
P+ P ++VG+L + + E F P G ++ + R+ Y +V+ P D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 160 INKCIKELNGMMVDGKPMKVQIS 182
+ + +N ++ GKP+++ S
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWS 87
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 94/200 (47%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++ N++ S E + LFE YGK+ + K+ +GFV+ EN E A+ ELN
Sbjct: 234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELN 293
Query: 91 GQIVNEKPLKIEAATSRKG---------PNTPTTK--------VFVGNLSDNTRAPEVRE 133
+ +N + + + A ++ NT K +F+ NL D + ++ E
Sbjct: 294 DKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEE 353
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+G++ ++ + +GFV SP + K I E+N M+ GKP+ V ++ +
Sbjct: 354 EFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRK 413
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R +++ + + + +Q
Sbjct: 414 DVRRSQLEQQIQARNQMRMQ 433
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N++P + + F +GK++ C V K +
Sbjct: 122 CRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCF 181
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AI+ +NG ++N++ + + S+K + T V+ N+
Sbjct: 182 GFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDL 241
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKP 176
+ E ++LF YG + + ++ +GFV+ ++ + K + ELN ++G+
Sbjct: 242 DFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQK 301
Query: 177 MKV 179
+ V
Sbjct: 302 IYV 304
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G +NP + L+ +F G+V V ++ Y +V+ E+G AI++L
Sbjct: 53 LYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDL 112
Query: 90 NGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ +P +I S++ P+ +F+ NL + + F +G ++ C +
Sbjct: 113 NYSLIEGRPCRI--MWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKV 170
Query: 147 VRN-------YGFVHIDSPDINKCIKE-LNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
+ +GFVH ++ + + E +NGM+++ + + V S+ + +E+
Sbjct: 171 ATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEM 227
Score = 35.4 bits (80), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 102 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV 153
EAA S + +T + ++VG L+ + + E+F P G V + R+ Y +V
Sbjct: 39 EAADSAQVSDT-SASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYV 97
Query: 154 HIDS-PDINKCIKELNGMMVDGKPMKVQIS 182
+ D K I++LN +++G+P ++ S
Sbjct: 98 NFHKFEDGEKAIEDLNYSLIEGRPCRIMWS 127
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 78/157 (49%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ + E+G A++EL
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 110 NYTVIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKV 167
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 168 AQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK 204
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 119 CRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGY 178
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSD 124
GFVH E E AIK +NG ++NEK + K E + + T ++V N+
Sbjct: 179 GFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDL 238
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGKP 176
+ + RELF +G + I R+ +GFV +I + LN + G+
Sbjct: 239 DVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQK 298
Query: 177 MKV 179
+ V
Sbjct: 299 LYV 301
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 24/134 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ + E R LFEK+G + + ++ +GFV+ E A+ LN
Sbjct: 231 IYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLN 290
Query: 91 -----GQIV----------NEKPLK--IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
GQ + E+ L+ EAA K +++ NL+D+ ++R+
Sbjct: 291 DIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRD 350
Query: 134 LFVPYGTVVECDIV 147
+F P+GT+ ++
Sbjct: 351 MFTPFGTITSAKVI 364
Score = 33.5 bits (75), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 105 TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHID 156
T+ + + + ++VG L + + ELF G V + R+ Y +V+ +
Sbjct: 38 TAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYN 97
Query: 157 SP-DINKCIKELNGMMVDGKPMKVQIS 182
S D K ++ELN ++ GKP ++ S
Sbjct: 98 SSEDGEKALEELNYTVIKGKPCRIMWS 124
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 148 RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
+ +GFV +PD K + E+N M++GKP+ V ++ +
Sbjct: 425 KGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRK 463
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 119 CRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 178
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T V++ NL
Sbjct: 179 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQ 238
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E R++F +G + + R+ +GFV+ + D + E+N V G+
Sbjct: 239 EISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQK 298
Query: 177 MKV 179
+ V
Sbjct: 299 LYV 301
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ N +G A+++L
Sbjct: 50 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 109
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 110 NYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKV 167
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 168 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK 204
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 24/145 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N++ S E R +FEK+G++ + ++ +GFV+ + + A+ E+N
Sbjct: 231 VYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMN 290
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ V + L + EAA K ++V NL+D+ ++RE
Sbjct: 291 DKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRE 350
Query: 134 LFVPYGTVVECDIVRNYGFVHIDSP 158
+F PYGT+ ++R+ +P
Sbjct: 351 MFAPYGTITSAKVMRDTNIERTQTP 375
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 148 RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
+ +GFV SPD +K + E+N M++GKP+ V ++ +
Sbjct: 423 KGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRK 461
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
K +GFV + +E A+ E+N +++N KPL + A +
Sbjct: 423 KGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRK 461
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YG 72
+ S P S + +++G ++P + ++ LF G+V V ++ Y
Sbjct: 37 SASPSTTPSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYA 96
Query: 73 FVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAP 129
+V+ N +G A+++LN ++ KP +I S++ P T VF+ NL
Sbjct: 97 YVNYNNTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDAAIDNK 154
Query: 130 EVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
+ + F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 155 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK 208
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 123 CRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 182
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T V++ N+
Sbjct: 183 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQ 242
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKP 176
E R++F +G + + R+ +GFV+ + D + E+N + G+
Sbjct: 243 EVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQK 302
Query: 177 MKV 179
+ V
Sbjct: 303 LYV 305
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N++ + E R +FEK+G++ + ++ +GFV+ + + A+ E+N
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMN 294
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ + + L + EAA K ++V NL+D+ ++RE
Sbjct: 295 DKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRE 354
Query: 134 LFVPYGTVVECDIVRN 149
LF P+GT+ ++R+
Sbjct: 355 LFSPFGTITSAKVMRD 370
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 148 RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKSV 202
+ +GFV SPD +K + E+N MV+GKP+ V ++ + +R ++ + + ++
Sbjct: 423 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTI 478
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
K +GFV + +E A+ E+N ++VN KPL + A +
Sbjct: 423 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 461
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 21/173 (12%)
Query: 22 ISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGF 73
+ P S + +++G ++P + ++ LF G+V V ++ Y +
Sbjct: 35 VESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAY 94
Query: 74 VHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPE 130
V+ N +G A+++LN ++ KP +I S++ P T VF+ NL
Sbjct: 95 VNYNNTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKA 152
Query: 131 VRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
+ + F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 153 LHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK 205
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 120 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 179
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T V++ N+
Sbjct: 180 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQ 239
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 168
+ E RELF +G + + R+ +GFV+ + + + E+N
Sbjct: 240 DVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMN 291
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 24/149 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
++I N++ + E R LFEK+G++ + ++ +GFV+ E + A+ E+N
Sbjct: 232 VYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMN 291
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ + + L + EAA K ++V NL+D+ ++RE
Sbjct: 292 EKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRE 351
Query: 134 LFVPYGTVVECDIVRNYGFVHIDSPDINK 162
LF PYGT+ ++R+ +P+ +K
Sbjct: 352 LFGPYGTITSAKVMRDTNIERTQTPESDK 380
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 148 RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
+ +GFV SPD +K + E+N MV+GKP+ V ++ +
Sbjct: 433 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 471
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 101 IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGF 152
+E+ T+ + ++VG L + + ELF G V + R+ Y +
Sbjct: 35 VESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAY 94
Query: 153 VHI-DSPDINKCIKELNGMMVDGKPMKVQIS 182
V+ ++ D + +++LN ++ GKP ++ S
Sbjct: 95 VNYNNTADGERALEDLNYTLIKGKPCRIMWS 125
Score = 30.4 bits (67), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
K +GFV + +E A+ E+N ++VN KPL + A +
Sbjct: 433 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 471
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 86/177 (48%), Gaps = 21/177 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ N +G A+++L
Sbjct: 53 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 112
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 113 NYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 170
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
++ YGFVH ++ + N IK +NGM+++ K + V S+ ++ DE+
Sbjct: 171 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEM 227
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 26/160 (16%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 122 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 181
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T +++ N+
Sbjct: 182 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDP 241
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDS 157
+ E R++F +G + + R+ +GFV+ +
Sbjct: 242 DVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYST 281
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 24/136 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I+I N++P + E R +FE++G++ + ++ +GFV+ E + A+ E++
Sbjct: 234 IYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMH 293
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ V + L + EAA K ++V NL+D+ ++RE
Sbjct: 294 DKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRE 353
Query: 134 LFVPYGTVVECDIVRN 149
LF PYGT+ ++R+
Sbjct: 354 LFGPYGTITSAKVMRD 369
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 148 RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKSV 202
+ +GFV SPD +K + E+N MV+GKP+ V ++ + +R ++ + + ++
Sbjct: 428 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTI 483
Score = 30.4 bits (67), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
K +GFV + +E A+ E+N ++VN KPL + A +
Sbjct: 428 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 466
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 92/200 (46%), Gaps = 32/200 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I++ N++ S E LF +GK+ + K+ +GFV+ E+ E A++ELN
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELN 294
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ +N + + + EA K +FV NL D + ++ E
Sbjct: 295 DKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEE 354
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
F P+GT+ ++ + +GFV +P + K I E+N M++GKP+ V ++ +
Sbjct: 355 EFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRK 414
Query: 186 VRQRPGVDEVVIGQKSVPVQ 205
+R +++ + + + +Q
Sbjct: 415 DVRRSQLEQQIQARNQMRMQ 434
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G IFI N++P + + F +GK++ C V K +
Sbjct: 123 CRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCF 182
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AI+ +NG ++N++ + + S+K + T ++V N+
Sbjct: 183 GFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDL 242
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELNGMMVDGKP 176
N +LF P+G + + ++ +GFV+ D K ++ELN ++G+
Sbjct: 243 NYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQK 302
Query: 177 MKV 179
+ V
Sbjct: 303 IYV 305
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 20/135 (14%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G +NP + + +F G+V V ++ Y +V+ E+G AI+EL
Sbjct: 54 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEEL 113
Query: 90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N + +P +I S++ P+ + +F+ NL + + F +G ++ C +
Sbjct: 114 NYNPIEGRPCRI--MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKV 171
Query: 147 VRN-------YGFVH 154
+ +GFVH
Sbjct: 172 ATDEFGQSKCFGFVH 186
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDS-PDINKCI 164
+ ++VG L+ + + E+F P G V + R+ Y +V+ D K I
Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 110
Query: 165 KELNGMMVDGKPMKVQIS 182
+ELN ++G+P ++ S
Sbjct: 111 EELNYNPIEGRPCRIMWS 128
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
P G +FI N++ + I F +G ++ C V K YGFVH E +E
Sbjct: 82 PSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEE 141
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
T+I ++NG ++N K + + RK T V+V N +++ +++E
Sbjct: 142 AANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKE 201
Query: 134 LFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGM-MVDGKPMKV 179
F PYG + ++ + +GFV ++ + + ++ LNG M +GK + V
Sbjct: 202 FFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYV 256
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 33/181 (18%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
+++ N E ++ FE YGK+ V+ K +GFV E E A++ LN
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Query: 91 GQIVNE-KPL-----------------KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 132
G+ + E K L K E ++ + ++V NL D +R
Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 304
Query: 133 ELFVPYGTVVECDIV-------RNYGFVHIDSPDINKC-IKELNGMMVDGKPMKVQISTS 184
F PYG + ++ + +GFV ++ C + ELNG +V KP+ V ++
Sbjct: 305 IAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQR 364
Query: 185 R 185
+
Sbjct: 365 K 365
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRT 84
SV +++ N++ + +R F YG + V+ K +GFV E
Sbjct: 283 SVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATC 342
Query: 85 AIKELNGQIVNEKPLKIEAATSRK 108
A+ ELNG++V KPL + A ++
Sbjct: 343 AVTELNGRVVGSKPLYVALAQRKE 366
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 24/146 (16%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
I+I N++P E R LFEK+G++ + ++ +GFV+ E + A++E+N
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284
Query: 91 GQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 133
+ V + L + EAA K ++V NL+D+ ++RE
Sbjct: 285 DKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRE 344
Query: 134 LFVPYGTVVECDIVRNYGFVHIDSPD 159
LF PYGT+ ++R+ V +P+
Sbjct: 345 LFGPYGTITSAKVMRDTAPVETATPE 370
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 21/157 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
+++G ++P + ++ LF G+V V ++ Y +V+ + G A+ EL
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
N ++ KP +I S++ P T VF+ NL + + F +G ++ C +
Sbjct: 104 NYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 161
Query: 147 VRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 175
++ YGFVH ++ + N IK +NGM+++ K
Sbjct: 162 AQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDK 198
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 24 CRNM-----PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
CR M P G +FI N++ + + F +G ++ C V K Y
Sbjct: 113 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGY 172
Query: 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSD 124
GFVH E E AIK +NG ++N+K + + S+K + T +++ N+
Sbjct: 173 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDP 232
Query: 125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 168
E R+LF +G + + R+ +GFV+ + + ++E+N
Sbjct: 233 EVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 148 RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQR 189
+ +GFV SPD +K + E+N MV+GKP+ V ++ + +R
Sbjct: 417 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRR 459
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
K +GFV + +E A+ E+N ++VN KPL + A +
Sbjct: 417 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 455
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 31/176 (17%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
++I N E ++ LF K+G + V+ K +GFV E E+ + A+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 91 GQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------VGNLSDNTRAPEVRE 133
G+ +N K + + A + T + F V NL D +R+
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312
Query: 134 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQIS 182
F P+GT+ ++ + +GFV SP + K + E+NG +V KP+ V ++
Sbjct: 313 AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 31/188 (16%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
P G IF+ N++ + + + +G ++ C+VV K YGFVH E E
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSDNTRAP 129
AIK++NG ++N + + + SRK PN V++ N ++
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-----VYIKNFGEDMDDE 205
Query: 130 EVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKVQI 181
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 206 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 265
Query: 182 STSRVRQR 189
+ +V ++
Sbjct: 266 AQKKVERQ 273
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 84/166 (50%), Gaps = 20/166 (12%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFVHMEND 79
P S T +++G+++P + ++ F G ++ + + NY +V+ ++
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKV---FVGNLSDNTRAPEVRELFV 136
++ A+ +N ++ KP++I S++ P+ + V FV NL + + +
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS 120
Query: 137 PYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
+G ++ C++V + YGFVH ++ + + IK++NGM+++G+
Sbjct: 121 AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
+++ N++ G E +R F +G + V+ K +GFV + EE A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSD-----NTRAP 129
+IV KPL + A ++ T ++ ++ N RAP
Sbjct: 356 RIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAP 398
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR--------NYGFVHID-SPDI 160
P+ PT ++VG+L + + E F P G ++ I R NY +V+ + D
Sbjct: 6 PSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDA 65
Query: 161 NKCIKELNGMMVDGKPMKVQIS 182
+ +N ++ GKP+++ S
Sbjct: 66 EHALDTMNFDVIKGKPVRIMWS 87
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,780,796
Number of Sequences: 539616
Number of extensions: 3301417
Number of successful extensions: 11563
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 373
Number of HSP's that attempted gapping in prelim test: 9424
Number of HSP's gapped (non-prelim): 1651
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)