Query psy3721
Match_columns 207
No_of_seqs 111 out of 1671
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 23:51:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 4.1E-31 9E-36 219.6 20.2 155 32-187 104-277 (346)
2 TIGR01645 half-pint poly-U bin 100.0 2.7E-30 5.9E-35 225.7 20.1 155 34-188 106-287 (612)
3 KOG0148|consensus 100.0 2.3E-30 4.9E-35 200.8 17.3 153 35-187 62-240 (321)
4 KOG0109|consensus 100.0 1.7E-30 3.8E-35 203.2 13.3 158 36-196 3-161 (346)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.1E-28 2.4E-33 206.8 20.3 152 34-186 2-172 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.7E-28 1.2E-32 202.5 21.5 155 32-186 86-350 (352)
7 KOG0117|consensus 100.0 5E-28 1.1E-32 198.9 15.3 156 33-188 81-334 (506)
8 TIGR01622 SF-CC1 splicing fact 100.0 9.8E-27 2.1E-31 201.5 20.4 150 33-183 87-264 (457)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.9E-27 2.2E-31 202.3 20.2 152 34-185 1-174 (481)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2E-26 4.3E-31 200.4 20.7 153 33-185 273-480 (481)
11 TIGR01628 PABP-1234 polyadenyl 99.9 1.1E-26 2.4E-31 205.8 19.3 153 33-185 176-364 (562)
12 TIGR01628 PABP-1234 polyadenyl 99.9 1.2E-26 2.7E-31 205.5 18.4 149 37-185 2-167 (562)
13 KOG0131|consensus 99.9 3.8E-27 8.2E-32 173.3 11.9 165 30-194 4-186 (203)
14 TIGR01648 hnRNP-R-Q heterogene 99.9 3.8E-26 8.3E-31 199.3 20.2 156 33-188 136-310 (578)
15 KOG0144|consensus 99.9 5.2E-27 1.1E-31 192.2 12.6 157 33-189 32-210 (510)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.1E-25 2.4E-30 197.3 19.5 154 31-185 171-375 (509)
17 KOG0145|consensus 99.9 2.4E-25 5.2E-30 172.2 13.8 153 32-185 38-209 (360)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.2E-23 2.5E-28 184.5 19.6 153 33-185 293-502 (509)
19 TIGR01648 hnRNP-R-Q heterogene 99.9 1.4E-23 3.1E-28 183.3 17.7 148 32-186 55-223 (578)
20 KOG0127|consensus 99.9 1.5E-23 3.3E-28 176.2 14.8 152 35-186 5-197 (678)
21 KOG0124|consensus 99.9 4.3E-24 9.4E-29 172.2 9.3 152 35-186 113-291 (544)
22 KOG0145|consensus 99.9 1.3E-22 2.8E-27 157.1 14.5 159 27-185 119-358 (360)
23 TIGR01622 SF-CC1 splicing fact 99.9 5.8E-22 1.3E-26 171.7 19.4 151 35-185 186-448 (457)
24 KOG0110|consensus 99.9 9.2E-22 2E-26 169.9 12.9 151 35-185 515-693 (725)
25 KOG0127|consensus 99.9 3.2E-21 6.9E-26 162.4 15.6 151 35-185 117-378 (678)
26 KOG0123|consensus 99.9 3E-21 6.6E-26 161.6 15.3 141 36-186 2-154 (369)
27 TIGR01645 half-pint poly-U bin 99.8 1.2E-18 2.6E-23 152.9 19.3 73 34-106 203-283 (612)
28 KOG0148|consensus 99.8 9.2E-20 2E-24 142.0 10.5 128 33-187 4-144 (321)
29 KOG0105|consensus 99.8 2.6E-18 5.5E-23 127.2 15.1 142 33-174 4-177 (241)
30 KOG0144|consensus 99.8 5.7E-19 1.2E-23 145.2 12.1 179 11-189 98-508 (510)
31 KOG0146|consensus 99.8 2.3E-19 4.9E-24 139.7 9.2 157 34-190 18-370 (371)
32 KOG0123|consensus 99.8 3.5E-18 7.6E-23 143.2 13.7 160 22-184 65-245 (369)
33 KOG4206|consensus 99.8 1.2E-17 2.7E-22 127.4 15.0 147 37-183 11-220 (221)
34 KOG0106|consensus 99.8 1.4E-18 3E-23 133.6 7.1 148 36-183 2-169 (216)
35 KOG4205|consensus 99.8 8.5E-18 1.8E-22 136.8 11.5 153 34-187 5-178 (311)
36 KOG1457|consensus 99.7 4.6E-17 9.9E-22 123.9 12.7 144 30-173 29-274 (284)
37 KOG0110|consensus 99.7 5.3E-17 1.2E-21 140.7 12.8 152 32-183 382-596 (725)
38 KOG0147|consensus 99.7 1.4E-17 3.1E-22 140.7 7.8 156 31-187 175-360 (549)
39 KOG0124|consensus 99.7 8E-17 1.7E-21 130.4 10.2 174 8-181 183-531 (544)
40 PLN03134 glycine-rich RNA-bind 99.7 3.7E-16 7.9E-21 115.0 12.4 90 20-109 19-116 (144)
41 PLN03134 glycine-rich RNA-bind 99.7 7.7E-16 1.7E-20 113.3 11.7 76 112-187 32-116 (144)
42 KOG1190|consensus 99.7 1.7E-15 3.6E-20 124.2 14.5 151 35-185 297-491 (492)
43 KOG0147|consensus 99.7 1.2E-15 2.6E-20 129.1 11.6 151 34-184 277-527 (549)
44 KOG4211|consensus 99.6 1.2E-14 2.7E-19 121.7 14.5 148 33-183 8-180 (510)
45 KOG1190|consensus 99.6 3.9E-14 8.4E-19 116.3 17.0 166 34-199 149-387 (492)
46 KOG0107|consensus 99.6 3.4E-15 7.4E-20 109.7 8.3 77 33-109 8-87 (195)
47 PF00076 RRM_1: RNA recognitio 99.6 1E-14 2.2E-19 93.8 8.3 63 38-100 1-70 (70)
48 KOG4212|consensus 99.6 1.6E-13 3.4E-18 113.7 16.2 149 35-183 44-292 (608)
49 PF00076 RRM_1: RNA recognitio 99.6 2.4E-14 5.2E-19 92.0 8.1 62 117-178 1-70 (70)
50 KOG1548|consensus 99.6 2.3E-13 4.9E-18 109.7 15.0 153 33-185 132-352 (382)
51 PLN03120 nucleic acid binding 99.5 2.1E-13 4.5E-18 107.8 10.7 73 35-108 4-81 (260)
52 TIGR01659 sex-lethal sex-letha 99.5 1.1E-13 2.4E-18 115.5 9.7 77 110-186 103-188 (346)
53 KOG0125|consensus 99.5 1.2E-13 2.6E-18 110.6 9.0 94 92-186 75-175 (376)
54 KOG0107|consensus 99.5 1.1E-13 2.4E-18 101.8 8.2 78 114-191 10-91 (195)
55 PF14259 RRM_6: RNA recognitio 99.5 4.6E-13 9.9E-18 86.4 8.5 63 38-100 1-70 (70)
56 KOG0125|consensus 99.5 2.7E-13 5.8E-18 108.6 8.1 76 32-107 93-174 (376)
57 PLN03120 nucleic acid binding 99.4 5.6E-13 1.2E-17 105.4 9.7 71 114-185 4-80 (260)
58 COG0724 RNA-binding proteins ( 99.4 2.6E-12 5.6E-17 102.7 13.3 113 35-147 115-258 (306)
59 KOG0120|consensus 99.4 1.1E-12 2.5E-17 112.1 11.0 154 32-185 286-492 (500)
60 PF14259 RRM_6: RNA recognitio 99.4 1.3E-12 2.8E-17 84.2 8.8 62 117-178 1-70 (70)
61 KOG0114|consensus 99.4 9.2E-13 2E-17 89.0 7.9 74 112-185 16-95 (124)
62 KOG0121|consensus 99.4 4.1E-13 8.8E-18 94.1 6.3 73 33-105 34-114 (153)
63 KOG0122|consensus 99.4 1.8E-12 3.8E-17 100.2 9.5 77 31-107 185-269 (270)
64 KOG0109|consensus 99.4 1.5E-12 3.2E-17 103.0 7.0 81 115-195 3-84 (346)
65 PLN03121 nucleic acid binding 99.4 6.4E-12 1.4E-16 98.0 10.3 73 34-107 4-81 (243)
66 smart00362 RRM_2 RNA recogniti 99.4 8E-12 1.7E-16 79.7 9.1 65 37-101 1-71 (72)
67 KOG0114|consensus 99.4 6.9E-12 1.5E-16 84.8 8.7 76 33-108 16-96 (124)
68 PLN03213 repressor of silencin 99.3 6E-12 1.3E-16 105.9 9.6 75 33-107 8-88 (759)
69 KOG0121|consensus 99.3 2.9E-12 6.2E-17 89.8 6.5 73 113-185 35-116 (153)
70 KOG0117|consensus 99.3 3.1E-12 6.8E-17 106.3 7.5 77 34-110 258-334 (506)
71 PLN03213 repressor of silencin 99.3 5.7E-12 1.2E-16 106.1 8.5 73 113-185 9-88 (759)
72 smart00362 RRM_2 RNA recogniti 99.3 1.3E-11 2.8E-16 78.7 8.4 65 116-180 1-72 (72)
73 KOG0122|consensus 99.3 7.2E-12 1.6E-16 96.8 8.3 73 113-185 188-269 (270)
74 KOG0111|consensus 99.3 1.5E-12 3.2E-17 99.3 4.3 76 113-188 9-93 (298)
75 PF13893 RRM_5: RNA recognitio 99.3 1.8E-11 3.9E-16 75.5 8.3 52 131-182 1-56 (56)
76 KOG4207|consensus 99.3 3.8E-12 8.3E-17 96.2 6.2 76 31-106 9-92 (256)
77 KOG4207|consensus 99.3 4.3E-12 9.3E-17 95.9 6.3 74 114-187 13-95 (256)
78 KOG1456|consensus 99.3 8.5E-11 1.8E-15 95.9 14.0 156 30-185 26-199 (494)
79 cd00590 RRM RRM (RNA recogniti 99.3 3.8E-11 8.2E-16 76.9 9.4 67 37-103 1-74 (74)
80 KOG0113|consensus 99.3 2E-11 4.4E-16 96.8 9.5 79 28-106 94-180 (335)
81 PLN03121 nucleic acid binding 99.3 1.9E-11 4.1E-16 95.4 9.2 70 113-183 4-79 (243)
82 KOG0105|consensus 99.3 9.4E-12 2E-16 92.6 6.9 73 113-185 5-83 (241)
83 KOG0130|consensus 99.3 8.9E-12 1.9E-16 88.1 6.3 77 111-187 69-154 (170)
84 KOG0130|consensus 99.3 1E-11 2.2E-16 87.9 6.0 78 33-110 70-155 (170)
85 KOG4212|consensus 99.3 1.9E-10 4E-15 95.7 14.3 68 115-182 537-608 (608)
86 PF13893 RRM_5: RNA recognitio 99.2 7.1E-11 1.5E-15 72.7 8.5 53 52-104 1-56 (56)
87 KOG1456|consensus 99.2 6.3E-10 1.4E-14 91.0 16.2 148 38-185 125-363 (494)
88 KOG0149|consensus 99.2 1.6E-11 3.4E-16 94.6 6.3 74 112-186 10-92 (247)
89 smart00360 RRM RNA recognition 99.2 5.2E-11 1.1E-15 75.5 7.6 62 40-101 1-70 (71)
90 cd00590 RRM RRM (RNA recogniti 99.2 9E-11 2E-15 75.1 8.7 66 116-181 1-74 (74)
91 KOG0120|consensus 99.2 4.7E-11 1E-15 102.3 8.1 158 28-186 168-370 (500)
92 smart00360 RRM RNA recognition 99.2 7.1E-11 1.5E-15 74.9 7.2 62 119-180 1-71 (71)
93 KOG0132|consensus 99.2 5E-11 1.1E-15 104.9 7.8 104 34-137 420-529 (894)
94 KOG0113|consensus 99.2 1.7E-10 3.6E-15 91.7 9.2 75 112-186 99-182 (335)
95 KOG0111|consensus 99.2 3.2E-11 7E-16 92.0 4.9 78 33-110 8-93 (298)
96 KOG0153|consensus 99.2 1.6E-10 3.5E-15 93.5 8.7 76 110-185 224-303 (377)
97 KOG0129|consensus 99.2 8.2E-10 1.8E-14 93.6 13.2 133 34-166 258-432 (520)
98 KOG0149|consensus 99.2 8.3E-11 1.8E-15 90.6 6.5 72 34-106 11-90 (247)
99 COG0724 RNA-binding proteins ( 99.1 3.1E-10 6.8E-15 90.6 8.8 71 114-184 115-194 (306)
100 KOG0108|consensus 99.1 2.5E-10 5.5E-15 97.1 8.5 73 36-108 19-99 (435)
101 KOG4206|consensus 99.1 2.2E-10 4.8E-15 87.9 7.0 74 113-186 8-91 (221)
102 KOG0112|consensus 99.1 8.5E-11 1.9E-15 104.9 5.3 153 31-186 368-532 (975)
103 KOG0108|consensus 99.1 1.6E-10 3.5E-15 98.3 6.2 73 115-187 19-100 (435)
104 KOG0131|consensus 99.1 1.6E-10 3.5E-15 85.8 5.4 72 112-183 7-87 (203)
105 KOG0126|consensus 99.1 1.9E-11 4.1E-16 90.7 0.2 74 33-106 33-114 (219)
106 KOG0126|consensus 99.1 2E-11 4.3E-16 90.6 -0.1 75 110-184 31-114 (219)
107 KOG4211|consensus 99.1 3.3E-09 7.2E-14 89.5 12.9 152 33-187 101-360 (510)
108 KOG0132|consensus 99.0 1E-09 2.3E-14 96.8 7.3 77 113-189 420-499 (894)
109 KOG1365|consensus 99.0 2.1E-09 4.6E-14 88.2 7.5 160 23-183 149-360 (508)
110 KOG0128|consensus 99.0 8.9E-11 1.9E-15 104.4 -0.4 141 36-194 668-824 (881)
111 KOG4454|consensus 99.0 3.3E-10 7.2E-15 86.5 2.7 140 28-177 2-155 (267)
112 KOG0153|consensus 98.9 4.3E-09 9.4E-14 85.3 8.7 78 30-107 223-303 (377)
113 smart00361 RRM_1 RNA recogniti 98.9 3.7E-09 8.1E-14 68.1 6.6 52 128-179 2-69 (70)
114 KOG4660|consensus 98.9 8.5E-10 1.8E-14 94.3 3.4 157 26-185 66-250 (549)
115 KOG0146|consensus 98.9 3.1E-09 6.6E-14 83.5 6.0 90 96-186 2-102 (371)
116 smart00361 RRM_1 RNA recogniti 98.9 1E-08 2.2E-13 66.0 7.3 53 49-101 2-69 (70)
117 KOG1457|consensus 98.9 1.9E-08 4E-13 77.3 9.4 78 111-188 31-121 (284)
118 KOG0415|consensus 98.8 5.4E-09 1.2E-13 85.1 6.0 74 33-106 237-318 (479)
119 KOG2193|consensus 98.8 2E-10 4.4E-15 95.1 -2.4 146 37-185 3-157 (584)
120 KOG0415|consensus 98.8 1.7E-08 3.8E-13 82.2 6.4 74 110-183 235-317 (479)
121 KOG0151|consensus 98.7 3.1E-08 6.8E-13 86.9 7.6 75 33-107 172-257 (877)
122 KOG4661|consensus 98.7 3.3E-08 7.2E-13 85.0 7.0 73 113-185 404-485 (940)
123 KOG0106|consensus 98.7 1.6E-08 3.5E-13 78.2 4.5 71 116-186 3-74 (216)
124 KOG0226|consensus 98.6 2.1E-08 4.6E-13 78.3 3.4 151 35-185 96-270 (290)
125 KOG4208|consensus 98.6 1.7E-07 3.8E-12 71.1 7.8 75 33-107 47-130 (214)
126 KOG4661|consensus 98.6 1.1E-07 2.4E-12 81.8 7.3 75 34-108 404-486 (940)
127 KOG4210|consensus 98.6 6.3E-08 1.4E-12 78.8 5.1 154 34-188 87-267 (285)
128 KOG4208|consensus 98.6 2.9E-07 6.3E-12 69.9 7.5 76 110-185 45-130 (214)
129 KOG1365|consensus 98.6 1.9E-07 4.2E-12 76.9 6.9 149 33-183 58-241 (508)
130 PF11608 Limkain-b1: Limkain b 98.6 3.7E-07 8.1E-12 59.7 6.8 68 115-184 3-76 (90)
131 KOG0533|consensus 98.5 5.4E-07 1.2E-11 71.2 8.1 75 33-107 81-162 (243)
132 KOG0151|consensus 98.5 2.7E-07 5.9E-12 81.2 6.6 72 112-183 172-255 (877)
133 KOG0533|consensus 98.4 6.7E-07 1.4E-11 70.7 7.0 72 114-185 83-162 (243)
134 KOG4205|consensus 98.4 4.6E-07 1E-11 74.3 6.2 134 35-169 97-256 (311)
135 KOG4660|consensus 98.4 1.8E-07 4E-12 80.2 3.3 68 111-178 72-143 (549)
136 PF04059 RRM_2: RNA recognitio 98.4 3.4E-06 7.3E-11 57.5 8.1 73 35-107 1-87 (97)
137 KOG0116|consensus 98.3 1.6E-06 3.5E-11 73.8 7.3 72 114-186 288-368 (419)
138 KOG0116|consensus 98.3 1.4E-06 3E-11 74.2 6.2 71 35-106 288-366 (419)
139 KOG4209|consensus 98.3 2.2E-06 4.8E-11 67.7 6.4 75 110-185 97-180 (231)
140 KOG4307|consensus 98.2 4E-06 8.7E-11 73.9 7.6 152 32-185 308-514 (944)
141 PF08777 RRM_3: RNA binding mo 98.2 3.5E-06 7.6E-11 58.5 5.8 67 115-181 2-76 (105)
142 KOG4676|consensus 98.2 8.2E-07 1.8E-11 73.4 2.3 136 36-173 8-214 (479)
143 PF11608 Limkain-b1: Limkain b 98.2 1.8E-05 3.9E-10 51.9 7.8 70 36-107 3-77 (90)
144 KOG4209|consensus 98.2 3.5E-06 7.6E-11 66.6 5.4 76 31-107 97-180 (231)
145 KOG1548|consensus 98.1 1.3E-05 2.7E-10 65.5 7.1 72 114-185 134-221 (382)
146 COG5175 MOT2 Transcriptional r 98.0 3.6E-05 7.8E-10 62.8 8.1 72 114-185 114-203 (480)
147 PF08777 RRM_3: RNA binding mo 97.9 5.4E-05 1.2E-09 52.6 6.5 67 36-102 2-75 (105)
148 PF04059 RRM_2: RNA recognitio 97.8 0.00016 3.5E-09 49.3 7.8 72 115-186 2-88 (97)
149 PF14605 Nup35_RRM_2: Nup53/35 97.8 5E-05 1.1E-09 46.0 4.7 50 36-86 2-53 (53)
150 KOG4454|consensus 97.8 1.1E-05 2.5E-10 62.0 1.9 73 113-185 8-87 (267)
151 KOG0226|consensus 97.7 4.2E-05 9E-10 60.2 3.6 74 33-106 188-269 (290)
152 COG5175 MOT2 Transcriptional r 97.6 0.00019 4.2E-09 58.6 6.2 98 35-132 114-238 (480)
153 KOG3152|consensus 97.5 6.4E-05 1.4E-09 59.1 2.8 65 34-98 73-157 (278)
154 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00026 5.6E-09 42.8 4.0 49 115-164 2-53 (53)
155 KOG3152|consensus 97.4 7.5E-05 1.6E-09 58.7 2.1 64 113-176 73-157 (278)
156 PF08675 RNA_bind: RNA binding 97.4 0.0015 3.3E-08 42.8 7.3 59 32-91 6-64 (87)
157 PF08952 DUF1866: Domain of un 97.4 0.0015 3.2E-08 47.7 8.0 57 129-186 51-108 (146)
158 KOG4307|consensus 97.3 0.00082 1.8E-08 59.8 6.7 74 30-103 862-943 (944)
159 KOG1855|consensus 97.2 0.00049 1.1E-08 57.9 4.9 63 110-172 227-311 (484)
160 KOG0128|consensus 97.2 4.5E-05 9.7E-10 68.8 -2.1 138 35-173 571-735 (881)
161 KOG1855|consensus 97.1 0.00043 9.4E-09 58.2 3.6 72 24-95 218-312 (484)
162 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0029 6.3E-08 43.4 6.7 70 34-105 5-90 (100)
163 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0025 5.3E-08 43.8 5.9 70 114-185 6-92 (100)
164 KOG0112|consensus 97.0 0.0011 2.5E-08 60.4 5.4 78 31-108 451-532 (975)
165 PF08952 DUF1866: Domain of un 97.0 0.0049 1.1E-07 45.0 7.6 57 51-108 52-108 (146)
166 KOG2314|consensus 97.0 0.0032 7E-08 54.9 7.6 69 35-103 58-140 (698)
167 KOG1996|consensus 96.9 0.0023 5E-08 51.5 5.6 56 128-183 300-365 (378)
168 KOG2416|consensus 96.8 0.0022 4.7E-08 56.3 5.0 74 111-184 441-521 (718)
169 KOG1995|consensus 96.7 0.0027 5.8E-08 52.4 4.6 77 32-108 63-155 (351)
170 KOG2193|consensus 96.6 0.002 4.4E-08 54.3 3.5 73 115-187 2-78 (584)
171 KOG1995|consensus 96.6 0.0015 3.2E-08 53.9 2.7 74 113-186 65-155 (351)
172 KOG0115|consensus 96.5 0.0069 1.5E-07 47.9 5.7 82 81-170 6-95 (275)
173 KOG4849|consensus 96.3 0.0033 7.2E-08 51.8 2.9 72 34-105 79-160 (498)
174 KOG4210|consensus 96.3 0.0041 8.8E-08 50.9 3.3 76 33-109 182-266 (285)
175 KOG1996|consensus 96.3 0.014 3.1E-07 47.1 6.2 58 49-106 300-366 (378)
176 KOG0129|consensus 96.3 0.013 2.7E-07 50.8 6.3 55 33-87 368-431 (520)
177 KOG2202|consensus 96.2 0.0026 5.6E-08 50.3 1.9 56 52-107 85-148 (260)
178 KOG2202|consensus 96.1 0.0024 5.2E-08 50.5 1.0 57 129-185 83-148 (260)
179 PF03467 Smg4_UPF3: Smg-4/UPF3 96.0 0.01 2.2E-07 45.1 4.1 64 33-96 5-82 (176)
180 KOG2314|consensus 96.0 0.015 3.3E-07 50.9 5.5 70 114-183 58-142 (698)
181 KOG4676|consensus 95.9 0.0077 1.7E-07 50.4 3.4 69 115-183 8-87 (479)
182 KOG2416|consensus 95.9 0.0072 1.6E-07 53.1 3.2 73 33-105 442-520 (718)
183 PF10309 DUF2414: Protein of u 95.8 0.06 1.3E-06 33.5 6.3 52 36-89 6-62 (62)
184 PF08675 RNA_bind: RNA binding 95.8 0.079 1.7E-06 34.9 7.1 55 115-169 9-64 (87)
185 KOG2591|consensus 95.8 0.029 6.4E-07 49.1 6.6 67 33-99 173-244 (684)
186 KOG2591|consensus 95.8 0.029 6.3E-07 49.1 6.4 92 80-178 148-245 (684)
187 PF10309 DUF2414: Protein of u 95.6 0.058 1.2E-06 33.6 5.6 52 114-167 5-62 (62)
188 PF03880 DbpA: DbpA RNA bindin 95.6 0.068 1.5E-06 34.5 6.3 58 125-182 12-74 (74)
189 PF15023 DUF4523: Protein of u 95.5 0.1 2.2E-06 37.9 7.4 72 33-105 84-160 (166)
190 PF07292 NID: Nmi/IFP 35 domai 95.5 0.039 8.4E-07 36.9 4.8 65 72-136 1-74 (88)
191 PF04847 Calcipressin: Calcipr 95.4 0.056 1.2E-06 41.3 6.1 61 47-107 7-71 (184)
192 KOG4849|consensus 95.3 0.011 2.5E-07 48.8 2.3 70 114-183 80-161 (498)
193 PF04847 Calcipressin: Calcipr 95.2 0.05 1.1E-06 41.6 5.5 59 127-185 8-71 (184)
194 KOG2135|consensus 95.2 0.02 4.3E-07 49.2 3.3 86 22-108 359-447 (526)
195 PF15023 DUF4523: Protein of u 95.1 0.093 2E-06 38.2 6.1 73 111-184 83-161 (166)
196 KOG2135|consensus 94.5 0.022 4.7E-07 48.9 2.0 67 119-186 377-447 (526)
197 PF07576 BRAP2: BRCA1-associat 94.2 0.48 1E-05 33.1 7.8 61 114-174 13-81 (110)
198 PF03467 Smg4_UPF3: Smg-4/UPF3 94.1 0.083 1.8E-06 40.1 4.3 72 113-184 6-97 (176)
199 PF03880 DbpA: DbpA RNA bindin 94.0 0.48 1E-05 30.5 7.1 58 46-104 12-74 (74)
200 KOG2253|consensus 93.9 0.033 7.2E-07 49.6 1.8 81 100-181 26-107 (668)
201 KOG4574|consensus 93.7 0.068 1.5E-06 49.1 3.5 73 117-189 301-378 (1007)
202 KOG2068|consensus 93.6 0.029 6.2E-07 46.2 0.9 72 114-185 77-163 (327)
203 PF07576 BRAP2: BRCA1-associat 93.4 1.1 2.4E-05 31.2 8.5 61 36-96 13-81 (110)
204 KOG0115|consensus 92.5 0.15 3.3E-06 40.5 3.5 59 36-94 32-97 (275)
205 KOG0804|consensus 92.2 0.57 1.2E-05 40.3 6.7 65 32-96 71-142 (493)
206 PF14111 DUF4283: Domain of un 91.9 0.24 5.3E-06 36.2 3.8 100 47-147 29-138 (153)
207 KOG4285|consensus 91.0 1.5 3.3E-05 35.9 7.6 71 35-107 197-270 (350)
208 KOG0804|consensus 91.0 1 2.2E-05 38.8 6.9 61 114-174 74-142 (493)
209 PF11767 SET_assoc: Histone ly 90.8 1.9 4.1E-05 27.2 6.5 55 46-101 11-65 (66)
210 KOG2068|consensus 90.8 0.11 2.5E-06 42.8 1.1 73 35-107 77-163 (327)
211 PF11767 SET_assoc: Histone ly 89.5 2.4 5.2E-05 26.7 6.2 54 125-179 11-65 (66)
212 KOG4285|consensus 89.3 0.69 1.5E-05 37.8 4.5 66 115-182 198-267 (350)
213 KOG2253|consensus 89.0 0.3 6.5E-06 43.8 2.4 69 34-103 39-107 (668)
214 KOG4574|consensus 86.2 0.55 1.2E-05 43.4 2.4 71 37-107 300-374 (1007)
215 PF10567 Nab6_mRNP_bdg: RNA-re 84.3 22 0.00047 29.2 12.1 137 33-170 13-214 (309)
216 KOG2891|consensus 80.3 1.1 2.4E-05 36.2 1.8 122 64-185 69-268 (445)
217 KOG4410|consensus 75.8 5.3 0.00012 32.6 4.4 48 33-80 328-378 (396)
218 KOG4019|consensus 75.0 1.7 3.7E-05 33.0 1.3 56 131-186 32-91 (193)
219 KOG2318|consensus 68.7 29 0.00063 31.2 7.6 72 32-103 171-302 (650)
220 PF02714 DUF221: Domain of unk 61.2 19 0.00041 29.7 5.1 55 72-135 1-55 (325)
221 KOG2295|consensus 60.3 2.2 4.8E-05 37.8 -0.7 64 33-96 229-300 (648)
222 KOG2891|consensus 60.0 8.8 0.00019 31.3 2.7 33 36-68 150-194 (445)
223 KOG1295|consensus 58.9 15 0.00032 31.3 3.9 63 32-94 4-77 (376)
224 KOG4019|consensus 55.6 20 0.00043 27.4 3.7 73 36-108 11-91 (193)
225 PF15513 DUF4651: Domain of un 55.3 24 0.00052 21.9 3.5 19 50-68 9-27 (62)
226 PF14893 PNMA: PNMA 54.7 14 0.00031 31.0 3.2 48 33-80 16-73 (331)
227 KOG4483|consensus 52.5 39 0.00084 29.1 5.3 58 30-87 386-445 (528)
228 KOG4410|consensus 52.4 26 0.00057 28.7 4.2 44 114-157 330-376 (396)
229 PF07292 NID: Nmi/IFP 35 domai 49.5 10 0.00022 25.3 1.3 25 32-56 49-73 (88)
230 TIGR03636 L23_arch archaeal ri 49.2 61 0.0013 21.0 4.9 51 117-167 16-74 (77)
231 KOG4008|consensus 46.3 14 0.0003 29.4 1.7 44 33-76 38-81 (261)
232 PRK10629 EnvZ/OmpR regulon mod 44.9 1.1E+02 0.0025 21.8 6.9 58 126-183 50-109 (127)
233 COG0018 ArgS Arginyl-tRNA synt 44.3 1.4E+02 0.0031 27.2 8.0 95 48-147 59-163 (577)
234 PRK14548 50S ribosomal protein 44.0 78 0.0017 20.9 4.8 50 118-167 24-81 (84)
235 KOG4483|consensus 41.4 49 0.0011 28.5 4.3 53 114-166 391-446 (528)
236 KOG4008|consensus 40.0 16 0.00034 29.1 1.2 34 114-147 40-73 (261)
237 KOG2318|consensus 38.7 1.5E+02 0.0032 27.0 6.9 73 113-185 173-308 (650)
238 PF09902 DUF2129: Uncharacteri 38.6 83 0.0018 20.0 4.2 50 37-94 5-54 (71)
239 PF10567 Nab6_mRNP_bdg: RNA-re 37.1 90 0.0019 25.8 5.1 72 113-184 14-107 (309)
240 PRK11634 ATP-dependent RNA hel 35.0 98 0.0021 28.5 5.6 60 124-183 497-561 (629)
241 PRK02302 hypothetical protein; 34.4 1E+02 0.0022 20.6 4.2 51 36-94 10-60 (89)
242 PF03468 XS: XS domain; Inter 32.4 76 0.0016 22.3 3.6 43 126-168 29-77 (116)
243 PRK02886 hypothetical protein; 30.9 1.3E+02 0.0027 20.1 4.2 51 36-94 8-58 (87)
244 PF11823 DUF3343: Protein of u 30.3 86 0.0019 19.7 3.3 25 70-94 2-26 (73)
245 PF03439 Spt5-NGN: Early trans 28.7 1.1E+02 0.0024 19.9 3.7 34 61-94 33-69 (84)
246 KOG2295|consensus 28.5 18 0.00039 32.4 -0.2 64 115-178 232-304 (648)
247 PF12829 Mhr1: Transcriptional 27.4 1.3E+02 0.0029 20.1 3.9 50 119-168 17-72 (91)
248 PF13689 DUF4154: Domain of un 26.6 2E+02 0.0042 20.7 5.1 48 75-124 32-79 (145)
249 COG0030 KsgA Dimethyladenosine 22.7 2.6E+02 0.0057 22.6 5.5 28 114-141 95-122 (259)
250 KOG0862|consensus 22.2 61 0.0013 25.4 1.7 29 129-157 89-118 (216)
251 COG0445 GidA Flavin-dependent 20.0 5.3E+02 0.012 23.7 7.2 81 71-151 238-339 (621)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.98 E-value=4.1e-31 Score=219.62 Aligned_cols=155 Identities=23% Similarity=0.472 Sum_probs=140.2
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
....++|||+|||+++|+++|+++|+.||+|.+++++ ++||||+|.++++|++|++.|++..+.++.|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 3467899999999999999999999999999999886 47999999999999999999999999999999999
Q ss_pred cccCCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCC
Q psy3721 104 ATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDG 174 (207)
Q Consensus 104 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g 174 (207)
+.+... .....+|||+|||.++++++|+++|+.||.|+.++++ +++|||+|.+ ++|.+|+..||+..+.+
T Consensus 184 a~p~~~-~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g 262 (346)
T TIGR01659 184 ARPGGE-SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEG 262 (346)
T ss_pred cccccc-ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 875432 2345689999999999999999999999999999987 4699999999 99999999999999866
Q ss_pred --eeEEEEeccCccC
Q psy3721 175 --KPMKVQISTSRVR 187 (207)
Q Consensus 175 --~~i~v~~~~~~~~ 187 (207)
++|+|.++.+..+
T Consensus 263 ~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 263 GSQPLTVRLAEEHGK 277 (346)
T ss_pred CceeEEEEECCcccc
Confidence 7999999987644
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=2.7e-30 Score=225.69 Aligned_cols=155 Identities=17% Similarity=0.467 Sum_probs=139.8
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
..++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.++|..+.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45799999999999999999999999999999985 7899999999999999999999999999999998765
Q ss_pred cCCC----------CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHH
Q psy3721 106 SRKG----------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKE 166 (207)
Q Consensus 106 ~~~~----------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~ 166 (207)
.... +.....+|||+|||+++++++|+++|+.||.|.++++. +|||||+|.+ ++|.+|+..
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 3321 11235789999999999999999999999999999986 6799999999 999999999
Q ss_pred hCCceeCCeeEEEEeccCccCC
Q psy3721 167 LNGMMVDGKPMKVQISTSRVRQ 188 (207)
Q Consensus 167 l~g~~~~g~~i~v~~~~~~~~~ 188 (207)
|||..++|+.|+|.++.+.+..
T Consensus 266 mNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred hCCCeeCCeEEEEEecCCCccc
Confidence 9999999999999999875433
No 3
>KOG0148|consensus
Probab=99.97 E-value=2.3e-30 Score=200.76 Aligned_cols=153 Identities=26% Similarity=0.575 Sum_probs=143.4
Q ss_pred cccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
..-+||+.|.+.++-++|++.|.+||+|.+.++. +|||||.|.+.++|+.|+..|+|..+++|.|+..|+.+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 3458999999999999999999999999999987 68999999999999999999999999999999999988
Q ss_pred CCC---------------CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhC
Q psy3721 107 RKG---------------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELN 168 (207)
Q Consensus 107 ~~~---------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~ 168 (207)
+.. .++.++++|++|++..+++++|++.|++||.|.+++++ +||+||+|++ |+|.+|+..+|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mN 221 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMN 221 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhc
Confidence 754 23567899999999999999999999999999999998 7899999999 99999999999
Q ss_pred CceeCCeeEEEEeccCccC
Q psy3721 169 GMMVDGKPMKVQISTSRVR 187 (207)
Q Consensus 169 g~~~~g~~i~v~~~~~~~~ 187 (207)
|+.++|+.++|.|.++...
T Consensus 222 ntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 222 NTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred CceeCceEEEEeccccCCC
Confidence 9999999999999997754
No 4
>KOG0109|consensus
Probab=99.97 E-value=1.7e-30 Score=203.22 Aligned_cols=158 Identities=44% Similarity=0.797 Sum_probs=151.5
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCCCCCCCc
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT 115 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~ 115 (207)
..|||+|||..+++.+|+.+|+.||+|.++.|.++||||..++...|+.|++-|++..++|..|.|+.++++ +.++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK---sk~st 79 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK---SKAST 79 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEecccc---CCCcc
Confidence 479999999999999999999999999999999999999999999999999999999999999999999887 45678
Q ss_pred eeeecCCCCCCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccCCCCCCCc
Q psy3721 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194 (207)
Q Consensus 116 ~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~ 194 (207)
+|+|+|+.+.++.++|+..|++||.|..|+++++|+||.|+- ++|..|+..|||+.|.|++++|..++++-+..|++++
T Consensus 80 kl~vgNis~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrtapgmgD 159 (346)
T KOG0109|consen 80 KLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 159 (346)
T ss_pred ccccCCCCccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHhcccccccccceeeeeeeccccccCCCCCC
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999898888887
Q ss_pred cc
Q psy3721 195 VV 196 (207)
Q Consensus 195 ~~ 196 (207)
..
T Consensus 160 q~ 161 (346)
T KOG0109|consen 160 QS 161 (346)
T ss_pred HH
Confidence 53
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.1e-28 Score=206.81 Aligned_cols=152 Identities=25% Similarity=0.545 Sum_probs=137.9
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
+.++|||+|||+.+++++|+++|+.||+|.+++++ +|||||+|.+.++|++|+..|++..+.|+.|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999996 4799999999999999999999999999999999987
Q ss_pred cCCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCC--
Q psy3721 106 SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDG-- 174 (207)
Q Consensus 106 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g-- 174 (207)
+... .....+|||+|||.++++++|+++|+.||.|..+.+. +++|||+|.+ ++|.+|+..|||..+.|
T Consensus 82 ~~~~-~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~ 160 (352)
T TIGR01661 82 PSSD-SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCT 160 (352)
T ss_pred cccc-ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCc
Confidence 6543 2346689999999999999999999999999998886 5799999999 99999999999999877
Q ss_pred eeEEEEeccCcc
Q psy3721 175 KPMKVQISTSRV 186 (207)
Q Consensus 175 ~~i~v~~~~~~~ 186 (207)
.+|.+.|+....
T Consensus 161 ~~i~v~~a~~~~ 172 (352)
T TIGR01661 161 EPITVKFANNPS 172 (352)
T ss_pred eeEEEEECCCCC
Confidence 678888886543
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=5.7e-28 Score=202.54 Aligned_cols=155 Identities=24% Similarity=0.514 Sum_probs=136.0
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCC--eeeEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNE--KPLKI 101 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g--~~i~v 101 (207)
....++|||+|||+.+++++|+++|+.||.|..+.+. +|||||+|.+.++|+.|++.|++..+.| ..|.+
T Consensus 86 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v 165 (352)
T TIGR01661 86 SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITV 165 (352)
T ss_pred ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 3456799999999999999999999999999888875 5799999999999999999999998876 56888
Q ss_pred EEcccCCCC-----------------------------------------------------------------------
Q psy3721 102 EAATSRKGP----------------------------------------------------------------------- 110 (207)
Q Consensus 102 ~~~~~~~~~----------------------------------------------------------------------- 110 (207)
.++......
T Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (352)
T TIGR01661 166 KFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRAS 245 (352)
T ss_pred EECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCC
Confidence 876433200
Q ss_pred --------------------CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHH
Q psy3721 111 --------------------NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDIN 161 (207)
Q Consensus 111 --------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~ 161 (207)
...+.+|||+|||+.+++++|+++|++||.|.+++++ +|||||+|.+ ++|.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 246 PPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred CccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHH
Confidence 0112369999999999999999999999999999997 7899999999 9999
Q ss_pred HHHHHhCCceeCCeeEEEEeccCcc
Q psy3721 162 KCIKELNGMMVDGKPMKVQISTSRV 186 (207)
Q Consensus 162 ~A~~~l~g~~~~g~~i~v~~~~~~~ 186 (207)
+|+..|||..++|+.|+|.|...+.
T Consensus 326 ~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 326 MAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHHhCCCEECCeEEEEEEccCCC
Confidence 9999999999999999999998764
No 7
>KOG0117|consensus
Probab=99.96 E-value=5e-28 Score=198.87 Aligned_cols=156 Identities=29% Similarity=0.502 Sum_probs=139.1
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCee-CCeeeEEEE
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIV-NEKPLKIEA 103 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~-~g~~i~v~~ 103 (207)
.-.|.|||+.||.++.|++|.-+|++.|+|.++.++ +|||||+|.+.+.|++|++.||+..+ .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 457899999999999999999999999999999998 78999999999999999999999988 677777766
Q ss_pred cccCCC--------------------------------------------------------------------------
Q psy3721 104 ATSRKG-------------------------------------------------------------------------- 109 (207)
Q Consensus 104 ~~~~~~-------------------------------------------------------------------------- 109 (207)
+.....
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 533210
Q ss_pred -----CC---------CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCC
Q psy3721 110 -----PN---------TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 174 (207)
Q Consensus 110 -----~~---------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g 174 (207)
++ .....|||.||+.++|++.|+++|..||.|++++.+++||||.|.+ ++|.+|++.+||+.|+|
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkeldG 320 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAMKETNGKELDG 320 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccceeEEeecchHHHHHHHHHhcCceecC
Confidence 00 0236899999999999999999999999999999999999999999 99999999999999999
Q ss_pred eeEEEEeccCccCC
Q psy3721 175 KPMKVQISTSRVRQ 188 (207)
Q Consensus 175 ~~i~v~~~~~~~~~ 188 (207)
..|.|.+++|...+
T Consensus 321 ~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 321 SPIEVTLAKPVDKK 334 (506)
T ss_pred ceEEEEecCChhhh
Confidence 99999999987543
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=9.8e-27 Score=201.45 Aligned_cols=150 Identities=23% Similarity=0.478 Sum_probs=135.8
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
...++|||+|||..+++++|+++|+.||.|.++.++ +|||||+|.+.++|.+|+ .++|..+.|+.|.|.+.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEeec
Confidence 456799999999999999999999999999999996 579999999999999999 58999999999999886
Q ss_pred ccCCC-----------CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHH
Q psy3721 105 TSRKG-----------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCI 164 (207)
Q Consensus 105 ~~~~~-----------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~ 164 (207)
..... ..+...+|||+|||..+++++|+++|+.||.|..+.+. +|||||+|.+ ++|.+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~ 245 (457)
T TIGR01622 166 QAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEAL 245 (457)
T ss_pred chhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 53321 11335899999999999999999999999999999987 5799999999 9999999
Q ss_pred HHhCCceeCCeeEEEEecc
Q psy3721 165 KELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 165 ~~l~g~~~~g~~i~v~~~~ 183 (207)
..|||..+.|+.|+|.|+.
T Consensus 246 ~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 246 EVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred HhcCCcEECCEEEEEEEcc
Confidence 9999999999999999976
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=9.9e-27 Score=202.34 Aligned_cols=152 Identities=16% Similarity=0.201 Sum_probs=133.4
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHh--cCCeeCCeeeEEEEcccCCC
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKEL--NGQIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l--~~~~~~g~~i~v~~~~~~~~ 109 (207)
++++|||+|||+.+++++|+++|+.||.|.++.++ ++||||+|.+.++|+.|++.+ ++..++|+.|+|.|+.....
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~ 80 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEI 80 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCccc
Confidence 36799999999999999999999999999999887 689999999999999999864 67889999999999864321
Q ss_pred C-----------CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe----cCEEEEEEcc-HhHHHHHHHhCCceeC
Q psy3721 110 P-----------NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----RNYGFVHIDS-PDINKCIKELNGMMVD 173 (207)
Q Consensus 110 ~-----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~----~~~afv~f~~-e~a~~A~~~l~g~~~~ 173 (207)
. ......|||+||++.+++++|+++|+.||.|.++.+. +++|||+|.+ ++|.+|+..|||..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~ 160 (481)
T TIGR01649 81 KRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIY 160 (481)
T ss_pred ccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCccc
Confidence 1 0122478999999999999999999999999999987 2489999999 9999999999999996
Q ss_pred C--eeEEEEeccCc
Q psy3721 174 G--KPMKVQISTSR 185 (207)
Q Consensus 174 g--~~i~v~~~~~~ 185 (207)
| ..|+|.|+++.
T Consensus 161 ~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 161 NGCCTLKIEYAKPT 174 (481)
T ss_pred CCceEEEEEEecCC
Confidence 5 48999998853
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=2e-26 Score=200.44 Aligned_cols=153 Identities=21% Similarity=0.356 Sum_probs=136.9
Q ss_pred CCcccEEEcCCCC-CCCHHHHHHHhhcCCceEEEEEE---CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCC
Q psy3721 33 VGTFKIFIGNVNP-GTSVELIRPLFEKYGKVVECDVV---KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108 (207)
Q Consensus 33 ~~~~~l~V~~lp~-~~t~~~l~~~f~~~g~i~~i~~~---~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 108 (207)
.+.++|||+|||+ .+|+++|+++|+.||.|.+++++ +|+|||+|.+.++|..|+..|++..+.|+.|+|.++....
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 3568999999998 69999999999999999999987 6899999999999999999999999999999999874321
Q ss_pred C------------------------------------CCCCCceeeecCCCCCCChhHHHHhcccCCc--EEEEEEe---
Q psy3721 109 G------------------------------------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGT--VVECDIV--- 147 (207)
Q Consensus 109 ~------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~--i~~~~~~--- 147 (207)
. ..+++.+|||+|||.++++++|+++|+.||. +..+++.
T Consensus 353 ~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~ 432 (481)
T TIGR01649 353 VQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD 432 (481)
T ss_pred ccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC
Confidence 0 0124578999999999999999999999997 8888886
Q ss_pred ---cCEEEEEEcc-HhHHHHHHHhCCceeCCee------EEEEeccCc
Q psy3721 148 ---RNYGFVHIDS-PDINKCIKELNGMMVDGKP------MKVQISTSR 185 (207)
Q Consensus 148 ---~~~afv~f~~-e~a~~A~~~l~g~~~~g~~------i~v~~~~~~ 185 (207)
+++|||+|.+ ++|.+|+..|||..+.|+. |+|.|++++
T Consensus 433 ~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 433 NERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 4799999999 9999999999999999986 999999875
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.1e-26 Score=205.83 Aligned_cols=153 Identities=27% Similarity=0.602 Sum_probs=139.5
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeC----CeeeEE
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVN----EKPLKI 101 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~----g~~i~v 101 (207)
...++|||+|||+++|+++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.+++..+. |+.+.|
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 445789999999999999999999999999999887 569999999999999999999999999 999999
Q ss_pred EEcccCCCC-----------------CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc
Q psy3721 102 EAATSRKGP-----------------NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS 157 (207)
Q Consensus 102 ~~~~~~~~~-----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~ 157 (207)
.++..+... ...+.+|||+||++++++++|+++|+.||.|.++++. +|+|||+|.+
T Consensus 256 ~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~ 335 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSN 335 (562)
T ss_pred ecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCC
Confidence 887654332 2346789999999999999999999999999999996 6899999999
Q ss_pred -HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 158 -PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 158 -e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
++|.+|+..|||..++|++|.|.++..+
T Consensus 336 ~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 336 PEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred HHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 9999999999999999999999999864
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.2e-26 Score=205.52 Aligned_cols=149 Identities=23% Similarity=0.550 Sum_probs=135.5
Q ss_pred cEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCC
Q psy3721 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108 (207)
Q Consensus 37 ~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 108 (207)
+|||+|||+++||++|+++|+.||.|.+|++. +|||||+|.+.++|++|+..+++..+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999996 3799999999999999999999999999999999986443
Q ss_pred C-CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEE
Q psy3721 109 G-PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179 (207)
Q Consensus 109 ~-~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v 179 (207)
. ......+|||+|||.++++++|+++|+.||.|.+|++. +|||||+|.+ ++|.+|+..|||..+.|+.|.|
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v 161 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV 161 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE
Confidence 2 22335689999999999999999999999999999886 6799999999 9999999999999999999999
Q ss_pred EeccCc
Q psy3721 180 QISTSR 185 (207)
Q Consensus 180 ~~~~~~ 185 (207)
.....+
T Consensus 162 ~~~~~~ 167 (562)
T TIGR01628 162 GRFIKK 167 (562)
T ss_pred eccccc
Confidence 776554
No 13
>KOG0131|consensus
Probab=99.95 E-value=3.8e-27 Score=173.30 Aligned_cols=165 Identities=22% Similarity=0.433 Sum_probs=146.3
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEE
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 101 (207)
...+...+|||+||+..++++.|.++|-..|+|.++.+. +||||++|.++|+|+.|++.|+...+.|+.|+|
T Consensus 4 ~~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv 83 (203)
T KOG0131|consen 4 IERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV 83 (203)
T ss_pred cccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE
Confidence 344567799999999999999999999999999999987 689999999999999999999999999999999
Q ss_pred EEcccCCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEE-EEe--------cCEEEEEEcc-HhHHHHHHHhCCce
Q psy3721 102 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC-DIV--------RNYGFVHIDS-PDINKCIKELNGMM 171 (207)
Q Consensus 102 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~-~~~--------~~~afv~f~~-e~a~~A~~~l~g~~ 171 (207)
..+.........+..|||+||.+.+++..|++.|+.||.+... ++. +++||+.|.+ +.+.+|+..+||+.
T Consensus 84 ~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 84 NKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred EecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 9998555555667899999999999999999999999987663 222 6799999999 99999999999999
Q ss_pred eCCeeEEEEeccCccCCCCCCCc
Q psy3721 172 VDGKPMKVQISTSRVRQRPGVDE 194 (207)
Q Consensus 172 ~~g~~i~v~~~~~~~~~~~~~~~ 194 (207)
+.+++++|.|+.-+..++.+.+.
T Consensus 164 l~nr~itv~ya~k~~~kg~~~g~ 186 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDTKGERHGT 186 (203)
T ss_pred hcCCceEEEEEEecCCCcccCCC
Confidence 99999999999887766644443
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=3.8e-26 Score=199.32 Aligned_cols=156 Identities=23% Similarity=0.403 Sum_probs=136.6
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCc-eEEEEEE---------CCEEEEEeCChHHHHHHHHHhcC--CeeCCeeeE
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGK-VVECDVV---------KNYGFVHMENDEEGRTAIKELNG--QIVNEKPLK 100 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~-i~~i~~~---------~~~~fV~f~~~~~a~~a~~~l~~--~~~~g~~i~ 100 (207)
...++|||+|||+.+++++|.+.|+.++. +.++.+. ++||||+|.++++|.+|++.|+. ..++|+.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 45689999999999999999999999864 4444332 68999999999999999988864 457899999
Q ss_pred EEEcccCCCCC----CCCceeeecCCCCCCChhHHHHhcccC--CcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeC
Q psy3721 101 IEAATSRKGPN----TPTTKVFVGNLSDNTRAPEVRELFVPY--GTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVD 173 (207)
Q Consensus 101 v~~~~~~~~~~----~~~~~l~v~nl~~~~t~~~l~~~f~~~--g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~ 173 (207)
|.|+.+..... ....+|||+||+.++++++|+++|+.| |.|+++++.++||||+|.+ ++|.+|+..|||..|+
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i~ 295 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAMDELNGKELE 295 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 99998764322 235789999999999999999999999 9999999999999999999 9999999999999999
Q ss_pred CeeEEEEeccCccCC
Q psy3721 174 GKPMKVQISTSRVRQ 188 (207)
Q Consensus 174 g~~i~v~~~~~~~~~ 188 (207)
|+.|+|.|+++....
T Consensus 296 Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 296 GSEIEVTLAKPVDKK 310 (578)
T ss_pred CEEEEEEEccCCCcc
Confidence 999999999886443
No 15
>KOG0144|consensus
Probab=99.95 E-value=5.2e-27 Score=192.19 Aligned_cols=157 Identities=31% Similarity=0.538 Sum_probs=142.7
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCee---CCeeeEE
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIV---NEKPLKI 101 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~---~g~~i~v 101 (207)
.+..++||+-||+.++|.||+.+|++||.|.+|.+. +|||||.|.+.++|.+|+..||.... ....|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 456789999999999999999999999999999998 57999999999999999999998764 3478999
Q ss_pred EEcccCCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCce-e
Q psy3721 102 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMM-V 172 (207)
Q Consensus 102 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~-~ 172 (207)
+++..+........+|||+-|++.+++.+++++|.+||.|++|.+. ||+|||+|.+ |.|..|++.|||.. +
T Consensus 112 k~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tm 191 (510)
T KOG0144|consen 112 KYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTM 191 (510)
T ss_pred cccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceee
Confidence 9999887776678899999999999999999999999999999997 7899999999 99999999999988 5
Q ss_pred CC--eeEEEEeccCccCCC
Q psy3721 173 DG--KPMKVQISTSRVRQR 189 (207)
Q Consensus 173 ~g--~~i~v~~~~~~~~~~ 189 (207)
.| .+|.|+|+.+.+++.
T Consensus 192 eGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 192 EGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred ccCCCceEEEecccCCCch
Confidence 55 699999999876554
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=1.1e-25 Score=197.25 Aligned_cols=154 Identities=19% Similarity=0.367 Sum_probs=132.2
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcC------------CceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCC
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKY------------GKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNE 96 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~------------g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g 96 (207)
.....++|||+|||+.+|+++|+++|..+ +.|..+.+. ++||||+|.+.++|..|+ .|+|..+.|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g 249 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSN 249 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeC
Confidence 34456899999999999999999999864 456666665 689999999999999999 699999999
Q ss_pred eeeEEEEcccCCC----------------------------CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-
Q psy3721 97 KPLKIEAATSRKG----------------------------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147 (207)
Q Consensus 97 ~~i~v~~~~~~~~----------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~- 147 (207)
+.|+|........ ......+|||+|||..+++++|+++|+.||.|..+.++
T Consensus 250 ~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~ 329 (509)
T TIGR01642 250 VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIK 329 (509)
T ss_pred ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe
Confidence 9999975432110 01234689999999999999999999999999999886
Q ss_pred -------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 148 -------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 148 -------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
+|||||+|.+ ++|..|+..|||..++|+.|.|.++...
T Consensus 330 ~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 330 DIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 6799999999 9999999999999999999999999754
No 17
>KOG0145|consensus
Probab=99.93 E-value=2.4e-25 Score=172.22 Aligned_cols=153 Identities=24% Similarity=0.541 Sum_probs=138.9
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEEC--------CEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~--------~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
.++.+.|.|.-||.++|++|++.+|...|+|.++++.+ |||||.|.++++|++|+..|+|..+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 56788999999999999999999999999999999984 6999999999999999999999999999999999
Q ss_pred cccCCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCC
Q psy3721 104 ATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDG 174 (207)
Q Consensus 104 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g 174 (207)
+++... ......|||++||+.+|..+|.++|++||.|...++. ||.|||+|+. .+|..|+..|||+.-.|
T Consensus 118 ARPSs~-~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g 196 (360)
T KOG0145|consen 118 ARPSSD-SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 196 (360)
T ss_pred ccCChh-hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCC
Confidence 987654 2345689999999999999999999999988776664 8999999999 99999999999999655
Q ss_pred --eeEEEEeccCc
Q psy3721 175 --KPMKVQISTSR 185 (207)
Q Consensus 175 --~~i~v~~~~~~ 185 (207)
.+|.|+|+...
T Consensus 197 ~tepItVKFannP 209 (360)
T KOG0145|consen 197 CTEPITVKFANNP 209 (360)
T ss_pred CCCCeEEEecCCc
Confidence 69999999743
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=1.2e-23 Score=184.51 Aligned_cols=153 Identities=22% Similarity=0.352 Sum_probs=132.1
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
.+.++|||+|||..+++++|+++|+.||.|..+.+. +|||||+|.+.++|..|+..|+|..++|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 456799999999999999999999999999988875 589999999999999999999999999999999997
Q ss_pred ccCCC---------------------------CCCCCceeeecCCCCC--C--------ChhHHHHhcccCCcEEEEEEe
Q psy3721 105 TSRKG---------------------------PNTPTTKVFVGNLSDN--T--------RAPEVRELFVPYGTVVECDIV 147 (207)
Q Consensus 105 ~~~~~---------------------------~~~~~~~l~v~nl~~~--~--------t~~~l~~~f~~~g~i~~~~~~ 147 (207)
..... ...++.+|++.|+... + ..++|+++|+.||.|..|.++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 53211 0124577899998642 1 126799999999999999987
Q ss_pred c-----------CEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 148 R-----------NYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 148 ~-----------~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
+ |++||+|.+ ++|.+|+..|||..|+|+.|.+.|..+.
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 2 689999999 9999999999999999999999998653
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.91 E-value=1.4e-23 Score=183.31 Aligned_cols=148 Identities=24% Similarity=0.396 Sum_probs=128.3
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeC-CeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVN-EKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~ 103 (207)
+...++|||+|||+++++++|+++|+.||.|.+++++ +|||||+|.++++|++|++.|++..+. |+.|.|.+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 4456899999999999999999999999999999986 689999999999999999999999884 77777766
Q ss_pred cccCCCCCCCCceeeecCCCCCCChhHHHHhcccCCc-EEEEEEe---------cCEEEEEEcc-HhHHHHHHHhCC--c
Q psy3721 104 ATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT-VVECDIV---------RNYGFVHIDS-PDINKCIKELNG--M 170 (207)
Q Consensus 104 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~-i~~~~~~---------~~~afv~f~~-e~a~~A~~~l~g--~ 170 (207)
+. ..++|||+|||.++++++|.+.|+.++. +.++.+. ++||||+|.+ ++|.+|+..|+. .
T Consensus 135 S~-------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki 207 (578)
T TIGR01648 135 SV-------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRI 207 (578)
T ss_pred cc-------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccce
Confidence 53 2578999999999999999999999863 4444432 6899999999 999999998864 3
Q ss_pred eeCCeeEEEEeccCcc
Q psy3721 171 MVDGKPMKVQISTSRV 186 (207)
Q Consensus 171 ~~~g~~i~v~~~~~~~ 186 (207)
.+.|+.|.|.|+.+..
T Consensus 208 ~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 208 QLWGHVIAVDWAEPEE 223 (578)
T ss_pred EecCceEEEEeecccc
Confidence 5899999999998764
No 20
>KOG0127|consensus
Probab=99.91 E-value=1.5e-23 Score=176.22 Aligned_cols=152 Identities=23% Similarity=0.462 Sum_probs=139.2
Q ss_pred cccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
..||||++||++++.++|.++|+..|+|..+.+. +|||||+|.-.++++.|++...+..|+|+.|.|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 3799999999999999999999999999988887 78999999999999999999999999999999998865
Q ss_pred CCCC-------------------------CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEE
Q psy3721 107 RKGP-------------------------NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVH 154 (207)
Q Consensus 107 ~~~~-------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~ 154 (207)
.... ..+.+.|.|.|||+.+...+|+.+|+.||.|..+.++ .|||||+
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEE
Confidence 4321 1136789999999999999999999999999999998 5799999
Q ss_pred Ecc-HhHHHHHHHhCCceeCCeeEEEEeccCcc
Q psy3721 155 IDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186 (207)
Q Consensus 155 f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 186 (207)
|.. .+|..|+..+||..|.|++|-|.|+-++.
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 999 99999999999999999999999998653
No 21
>KOG0124|consensus
Probab=99.90 E-value=4.3e-24 Score=172.19 Aligned_cols=152 Identities=18% Similarity=0.489 Sum_probs=138.3
Q ss_pred cccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
-|+|||+.|.....|+.|+..|.+||+|.+|.+. +|||||+|+-+|.|+.|++.+||..++|+.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 4799999999999999999999999999999986 79999999999999999999999999999999996654
Q ss_pred CCCC----------CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHh
Q psy3721 107 RKGP----------NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKEL 167 (207)
Q Consensus 107 ~~~~----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l 167 (207)
-... ...-++|||..+..+.+++||+..|+.||+|..|.+- +||||++|.+ .+-..|+..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 3321 2245799999999999999999999999999999996 7899999999 9999999999
Q ss_pred CCceeCCeeEEEEeccCcc
Q psy3721 168 NGMMVDGKPMKVQISTSRV 186 (207)
Q Consensus 168 ~g~~~~g~~i~v~~~~~~~ 186 (207)
|-..++|..|+|..+-..+
T Consensus 273 NlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred chhhcccceEecccccCCC
Confidence 9999999999998876544
No 22
>KOG0145|consensus
Probab=99.90 E-value=1.3e-22 Score=157.12 Aligned_cols=159 Identities=22% Similarity=0.477 Sum_probs=139.8
Q ss_pred CCCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCC--
Q psy3721 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNE-- 96 (207)
Q Consensus 27 ~~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g-- 96 (207)
-|+........|||.+||+.+|..||+++|++||.|....+. +|.|||.|....+|+.|++.|+|..-.|
T Consensus 119 RPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~t 198 (360)
T KOG0145|consen 119 RPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCT 198 (360)
T ss_pred cCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCC
Confidence 456666777899999999999999999999999998654443 7899999999999999999999998755
Q ss_pred eeeEEEEcccCCCC--------------------------------------------------------------CCCC
Q psy3721 97 KPLKIEAATSRKGP--------------------------------------------------------------NTPT 114 (207)
Q Consensus 97 ~~i~v~~~~~~~~~--------------------------------------------------------------~~~~ 114 (207)
..|.|+++...... ...+
T Consensus 199 epItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g 278 (360)
T KOG0145|consen 199 EPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGG 278 (360)
T ss_pred CCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCe
Confidence 67999998765320 1135
Q ss_pred ceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
+.|||.||..+.++.-|.++|.+||.|..+++. ||||||.+.+ ++|..|+..|||..++++.|.|.|...+
T Consensus 279 ~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 279 WCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred eEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 899999999999999999999999999999997 7899999999 9999999999999999999999998764
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.89 E-value=5.8e-22 Score=171.69 Aligned_cols=151 Identities=23% Similarity=0.424 Sum_probs=130.7
Q ss_pred cccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
.++|||+|||+.+++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|++.|+|..+.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 6899999999999999999999999999999887 47999999999999999999999999999999999431
Q ss_pred CCC-----------------------------------------------------------------------------
Q psy3721 107 RKG----------------------------------------------------------------------------- 109 (207)
Q Consensus 107 ~~~----------------------------------------------------------------------------- 109 (207)
...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 100
Q ss_pred ------------CCCCCceeeecCCCCCCC----------hhHHHHhcccCCcEEEEEEe----cCEEEEEEcc-HhHHH
Q psy3721 110 ------------PNTPTTKVFVGNLSDNTR----------APEVRELFVPYGTVVECDIV----RNYGFVHIDS-PDINK 162 (207)
Q Consensus 110 ------------~~~~~~~l~v~nl~~~~t----------~~~l~~~f~~~g~i~~~~~~----~~~afv~f~~-e~a~~ 162 (207)
...+..+|+|.|+....+ .++|++.|.+||.|..+.+. .|++||+|.+ ++|.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 002345678888855433 26899999999999999887 6899999999 99999
Q ss_pred HHHHhCCceeCCeeEEEEeccCc
Q psy3721 163 CIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 163 A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
|+..|||..|+|+.|.+.|....
T Consensus 426 A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 426 AFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred HHHHhcCcccCCeEEEEEEEcHH
Confidence 99999999999999999998754
No 24
>KOG0110|consensus
Probab=99.87 E-value=9.2e-22 Score=169.91 Aligned_cols=151 Identities=25% Similarity=0.498 Sum_probs=138.1
Q ss_pred cccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-----------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-----------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
.++|||.|++..+|.+++..+|...|.|.++.|. .|||||+|.+.++|+.|++.|+|..+.|+.|.+..
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 4459999999999999999999999999998776 28999999999999999999999999999999999
Q ss_pred ccc--------CCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHH
Q psy3721 104 ATS--------RKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKE 166 (207)
Q Consensus 104 ~~~--------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~ 166 (207)
+.. .......+..|+|.|+|+..+-.+++.+|..||.+.+++++ +|||||+|-+ .+|.+|+..
T Consensus 595 S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 595 SENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred ccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 882 22233446799999999999999999999999999999998 7899999999 999999999
Q ss_pred hCCceeCCeeEEEEeccCc
Q psy3721 167 LNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 167 l~g~~~~g~~i~v~~~~~~ 185 (207)
|..+-+.|+.|.+.|++..
T Consensus 675 l~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 675 LGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred hcccceechhhheehhccc
Confidence 9999999999999999865
No 25
>KOG0127|consensus
Probab=99.87 E-value=3.2e-21 Score=162.38 Aligned_cols=151 Identities=26% Similarity=0.514 Sum_probs=133.9
Q ss_pred cccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccC
Q psy3721 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 107 (207)
.-+|.|.|||..|.+.+|+.+|+.||.|++|.|+ .|||||+|.+..+|.+|++.+++..+.|+.|.|.|+..+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 5589999999999999999999999999999998 479999999999999999999999999999999999654
Q ss_pred CC--------------------------------------------C--C------------------------------
Q psy3721 108 KG--------------------------------------------P--N------------------------------ 111 (207)
Q Consensus 108 ~~--------------------------------------------~--~------------------------------ 111 (207)
.. + .
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 21 0 0
Q ss_pred -------------CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHh--
Q psy3721 112 -------------TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKEL-- 167 (207)
Q Consensus 112 -------------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l-- 167 (207)
.-..+|||.|||+++++++|+..|+.||.|.+..++ +|.|||.|.+ .+|+.++...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 012689999999999999999999999999999887 7899999999 9999998876
Q ss_pred ---CC-ceeCCeeEEEEeccCc
Q psy3721 168 ---NG-MMVDGKPMKVQISTSR 185 (207)
Q Consensus 168 ---~g-~~~~g~~i~v~~~~~~ 185 (207)
.| ..+.|+.|+|..+-++
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred cCCCceEEEeccEEeeeeccch
Confidence 34 5589999999998755
No 26
>KOG0123|consensus
Probab=99.87 E-value=3e-21 Score=161.59 Aligned_cols=141 Identities=23% Similarity=0.550 Sum_probs=132.0
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEEC-----CEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCCC
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK-----NYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP 110 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~-----~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 110 (207)
..|||+ +++|+..|.++|+++|++.++.+.+ |||||.|.++++|.+|+++++...++|+.+++.|+.....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~- 77 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS- 77 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc-
Confidence 368999 8999999999999999999999985 7999999999999999999999999999999999986554
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
.+||.||+++++..+|.++|+.||.|.+|++. +|| ||+|.+ ++|.+|+..+||..+.|+.|-|....
T Consensus 78 -----~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 78 -----LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred -----eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 29999999999999999999999999999997 778 999999 99999999999999999999998887
Q ss_pred Ccc
Q psy3721 184 SRV 186 (207)
Q Consensus 184 ~~~ 186 (207)
.+.
T Consensus 152 ~~~ 154 (369)
T KOG0123|consen 152 RKE 154 (369)
T ss_pred chh
Confidence 654
No 27
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.82 E-value=1.2e-18 Score=152.92 Aligned_cols=73 Identities=26% Similarity=0.517 Sum_probs=68.6
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
..++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|+..+|+..++|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999886 5899999999999999999999999999999999876
Q ss_pred c
Q psy3721 106 S 106 (207)
Q Consensus 106 ~ 106 (207)
+
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 28
>KOG0148|consensus
Probab=99.82 E-value=9.2e-20 Score=141.96 Aligned_cols=128 Identities=26% Similarity=0.538 Sum_probs=113.5
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCCCCC
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNT 112 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~ 112 (207)
+..++|||+||+..+||+-|..||...|.|.++++... +++|.|+......+.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~---------------------------e~~v~wa~~p~nQsk 56 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---------------------------ELKVNWATAPGNQSK 56 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh---------------------------hhccccccCcccCCC
Confidence 45789999999999999999999999999999988653 677777765543332
Q ss_pred ----CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEE
Q psy3721 113 ----PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179 (207)
Q Consensus 113 ----~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v 179 (207)
....+||+.|...++-++|++.|.+||+|.+++++ ||||||.|.. ++|++|+..|||+.|++|.|+.
T Consensus 57 ~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRT 136 (321)
T KOG0148|consen 57 PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRT 136 (321)
T ss_pred CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeec
Confidence 24569999999999999999999999999999998 7899999999 9999999999999999999999
Q ss_pred EeccCccC
Q psy3721 180 QISTSRVR 187 (207)
Q Consensus 180 ~~~~~~~~ 187 (207)
.|+..++.
T Consensus 137 NWATRKp~ 144 (321)
T KOG0148|consen 137 NWATRKPS 144 (321)
T ss_pred cccccCcc
Confidence 99998763
No 29
>KOG0105|consensus
Probab=99.80 E-value=2.6e-18 Score=127.22 Aligned_cols=142 Identities=20% Similarity=0.341 Sum_probs=126.3
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-----CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccC
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-----~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 107 (207)
..+++|||+|||+++-+.+|.++|-.||.|..|.+. ..||||+|+++.+|+.|+..-+|..+.|..|+|+++..-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 457899999999999999999999999999999987 359999999999999999999999999999999998654
Q ss_pred CC-------------------------CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-cCEEEEEEcc-HhH
Q psy3721 108 KG-------------------------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-RNYGFVHIDS-PDI 160 (207)
Q Consensus 108 ~~-------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-~~~afv~f~~-e~a 160 (207)
.. ...+...+.|.+||.+-++++|+++....|.|-...+. -+.+.|+|.. |+.
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg~GvV~~~r~eDM 163 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDGVGVVEYLRKEDM 163 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecccceeeeeeehhhH
Confidence 21 01134679999999999999999999999999888887 5699999999 999
Q ss_pred HHHHHHhCCceeCC
Q psy3721 161 NKCIKELNGMMVDG 174 (207)
Q Consensus 161 ~~A~~~l~g~~~~g 174 (207)
.-|+..|+.+.+..
T Consensus 164 kYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 164 KYAVRKLDDQKFRS 177 (241)
T ss_pred HHHHHhhccccccC
Confidence 99999999988755
No 30
>KOG0144|consensus
Probab=99.80 E-value=5.7e-19 Score=145.22 Aligned_cols=179 Identities=21% Similarity=0.450 Sum_probs=149.5
Q ss_pred hhccccccceeecccCCCCCCCC--CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHH
Q psy3721 11 KVSRYSNNQINISCRNMPGFSSV--GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEE 81 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~ 81 (207)
+....+.+-+....+-.++.... ..++|||+.|++.+||.|++++|++||.|.++.+. ||||||+|.+.|.
T Consensus 98 n~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~ 177 (510)
T KOG0144|consen 98 NQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEM 177 (510)
T ss_pred cccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHH
Confidence 33445555555555555543332 37899999999999999999999999999999998 6899999999999
Q ss_pred HHHHHHHhcCCe-eCC--eeeEEEEcccCCCCCC----------------------------------------------
Q psy3721 82 GRTAIKELNGQI-VNE--KPLKIEAATSRKGPNT---------------------------------------------- 112 (207)
Q Consensus 82 a~~a~~~l~~~~-~~g--~~i~v~~~~~~~~~~~---------------------------------------------- 112 (207)
|..|++.||+.. +.| ..|.|+|+.++.+...
T Consensus 178 A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~ 257 (510)
T KOG0144|consen 178 AVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNV 257 (510)
T ss_pred HHHHHHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCC
Confidence 999999999975 444 6899999987632000
Q ss_pred --------------------------------------------------------------------------------
Q psy3721 113 -------------------------------------------------------------------------------- 112 (207)
Q Consensus 113 -------------------------------------------------------------------------------- 112 (207)
T Consensus 258 g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~ 337 (510)
T KOG0144|consen 258 GTLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQT 337 (510)
T ss_pred cccccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy3721 113 -------------------------------------------------------------------------------- 112 (207)
Q Consensus 113 -------------------------------------------------------------------------------- 112 (207)
T Consensus 338 ~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~ 417 (510)
T KOG0144|consen 338 FPGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNG 417 (510)
T ss_pred CCCCchhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCc
Confidence
Q ss_pred -----CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEE
Q psy3721 113 -----PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMK 178 (207)
Q Consensus 113 -----~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~ 178 (207)
.+..|||++||-+.-+.+|-..|.+||.|...++. +.|+||.|++ .+|..||..|||..+++++++
T Consensus 418 q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~Krlk 497 (510)
T KOG0144|consen 418 QVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLK 497 (510)
T ss_pred cccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccce
Confidence 34679999999999999999999999999999887 6799999999 999999999999999999999
Q ss_pred EEeccCccCCC
Q psy3721 179 VQISTSRVRQR 189 (207)
Q Consensus 179 v~~~~~~~~~~ 189 (207)
|...+++..+.
T Consensus 498 VQlk~~~~np~ 508 (510)
T KOG0144|consen 498 VQLKRDRNNPY 508 (510)
T ss_pred EEeeeccCCCC
Confidence 99988775543
No 31
>KOG0146|consensus
Probab=99.80 E-value=2.3e-19 Score=139.72 Aligned_cols=157 Identities=27% Similarity=0.553 Sum_probs=140.7
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCee-C--CeeeEEEE
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIV-N--EKPLKIEA 103 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~-~--g~~i~v~~ 103 (207)
+.++|||+.|.+.-+|+|++.+|+.||.+.++.+. +|++||.|.++-+|..|+..|||..- . ...|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 56899999999999999999999999999999998 67999999999999999999999864 3 36789999
Q ss_pred cccCCCC-------------------------------------------------------------------------
Q psy3721 104 ATSRKGP------------------------------------------------------------------------- 110 (207)
Q Consensus 104 ~~~~~~~------------------------------------------------------------------------- 110 (207)
++.+.++
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 8765320
Q ss_pred --------------------------------------------------------------------------------
Q psy3721 111 -------------------------------------------------------------------------------- 110 (207)
Q Consensus 111 -------------------------------------------------------------------------------- 110 (207)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ------------------------CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-
Q psy3721 111 ------------------------NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS- 157 (207)
Q Consensus 111 ------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~- 157 (207)
.+.++.|||..||....+.+|-..|-+||-|.+.+++ |.||||.|++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 0046899999999999999999999999999999887 7799999999
Q ss_pred HhHHHHHHHhCCceeCCeeEEEEeccCccCCCC
Q psy3721 158 PDINKCIKELNGMMVDGKPMKVQISTSRVRQRP 190 (207)
Q Consensus 158 e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~ 190 (207)
.+|+.|+..|||..|+=++|+|...+|+...+|
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanRP 370 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRP 370 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCCC
Confidence 999999999999999999999999999876665
No 32
>KOG0123|consensus
Probab=99.78 E-value=3.5e-18 Score=143.20 Aligned_cols=160 Identities=26% Similarity=0.534 Sum_probs=140.2
Q ss_pred ecccCCCCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE------CCEEEEEeCChHHHHHHHHHhcCCeeC
Q psy3721 22 ISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNGQIVN 95 (207)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~------~~~~fV~f~~~~~a~~a~~~l~~~~~~ 95 (207)
.+++.|++... ...|||.||+++++..+|.++|+.||.|.++++. +|| ||+|.+++.|++|++.++|..+.
T Consensus 65 ~~~rim~s~rd--~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~ 141 (369)
T KOG0123|consen 65 KPIRIMWSQRD--PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLN 141 (369)
T ss_pred cEEEeehhccC--CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccC
Confidence 35555555333 3339999999999999999999999999999998 678 99999999999999999999999
Q ss_pred CeeeEEEEcccCCCCC-------CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhH
Q psy3721 96 EKPLKIEAATSRKGPN-------TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDI 160 (207)
Q Consensus 96 g~~i~v~~~~~~~~~~-------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a 160 (207)
|+.|.|.....+.... ..-..+++.+++.+.++..|..+|..+|.|..+.+. ++|+||.|.+ ++|
T Consensus 142 ~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a 221 (369)
T KOG0123|consen 142 GKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDA 221 (369)
T ss_pred CCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHH
Confidence 9999998877654422 234578999999999999999999999999999997 6799999999 999
Q ss_pred HHHHHHhCCceeCCeeEEEEeccC
Q psy3721 161 NKCIKELNGMMVDGKPMKVQISTS 184 (207)
Q Consensus 161 ~~A~~~l~g~~~~g~~i~v~~~~~ 184 (207)
..|+..|||..+.+..+-|..+..
T Consensus 222 ~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 222 KKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred HHHHHhccCCcCCccceeeccccc
Confidence 999999999999999888887765
No 33
>KOG4206|consensus
Probab=99.78 E-value=1.2e-17 Score=127.39 Aligned_cols=147 Identities=20% Similarity=0.436 Sum_probs=132.7
Q ss_pred cEEEcCCCCCCCHHHHHH----HhhcCCceEEEEEE-----CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccC
Q psy3721 37 KIFIGNVNPGTSVELIRP----LFEKYGKVVECDVV-----KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107 (207)
Q Consensus 37 ~l~V~~lp~~~t~~~l~~----~f~~~g~i~~i~~~-----~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 107 (207)
+|||.||......++|+. +|+.||.|.+|... +|.|||.|.+.+.|-.|++.|+|..+.|+.+++.++..+
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~ 90 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSD 90 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCc
Confidence 999999999999999998 99999999999887 799999999999999999999999999999999998664
Q ss_pred CC-------------------------------------------------CCCCCceeeecCCCCCCChhHHHHhcccC
Q psy3721 108 KG-------------------------------------------------PNTPTTKVFVGNLSDNTRAPEVRELFVPY 138 (207)
Q Consensus 108 ~~-------------------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~ 138 (207)
.. ..++...+|+.|||..++.+.+..+|+.|
T Consensus 91 sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf 170 (221)
T KOG4206|consen 91 SDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQF 170 (221)
T ss_pred cchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhC
Confidence 31 02456789999999999999999999999
Q ss_pred CcEEEEEEe---cCEEEEEEcc-HhHHHHHHHhCCceeC-CeeEEEEecc
Q psy3721 139 GTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVD-GKPMKVQIST 183 (207)
Q Consensus 139 g~i~~~~~~---~~~afv~f~~-e~a~~A~~~l~g~~~~-g~~i~v~~~~ 183 (207)
...+.+++. ++.|||+|.+ ..|..|...+.|..+- .+.+.+.+++
T Consensus 171 ~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 171 PGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred cccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 988888887 7899999999 8889999999999986 8888888764
No 34
>KOG0106|consensus
Probab=99.76 E-value=1.4e-18 Score=133.64 Aligned_cols=148 Identities=24% Similarity=0.519 Sum_probs=133.3
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCC------C
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------G 109 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~------~ 109 (207)
..+||++||+.+.+.+|..||..||.+.++.+..+|+||+|.+..+|..|+..+++..+.|..+.++|+.... .
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~ 81 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPR 81 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCCC
Confidence 4799999999999999999999999999999999999999999999999999999999999889999887421 1
Q ss_pred -------------CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCe
Q psy3721 110 -------------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGK 175 (207)
Q Consensus 110 -------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~ 175 (207)
+..+...+.+.+++..+.+++|.+.|.++|.+.......+++||+|.+ ++|.+|+..|+|..+.|+
T Consensus 82 ~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~ 161 (216)
T KOG0106|consen 82 GGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARRNFAFVEFSEQEDAKRALEKLDGKKLNGR 161 (216)
T ss_pred CCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhccccceeehhhhhhhhcchhccchhhcCc
Confidence 122456788999999999999999999999997777779999999999 999999999999999999
Q ss_pred eEEEEecc
Q psy3721 176 PMKVQIST 183 (207)
Q Consensus 176 ~i~v~~~~ 183 (207)
.|++...-
T Consensus 162 ~l~~~~~~ 169 (216)
T KOG0106|consen 162 RISVEKNS 169 (216)
T ss_pred eeeecccC
Confidence 99995543
No 35
>KOG4205|consensus
Probab=99.75 E-value=8.5e-18 Score=136.79 Aligned_cols=153 Identities=26% Similarity=0.480 Sum_probs=132.7
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEEC--------CEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~--------~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
..++|+|++|++.++++.|++.|..||+|.++.+++ +|+||+|.+++....++. .....+.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 678999999999999999999999999999999984 899999999999888773 35667889999999888
Q ss_pred cCCCCCC-----CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEccHhHHHHHHHhCCcee
Q psy3721 106 SRKGPNT-----PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDINKCIKELNGMMV 172 (207)
Q Consensus 106 ~~~~~~~-----~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~e~a~~A~~~l~g~~~ 172 (207)
+...... ....|||++||.++++++++++|++||.|.++.++ ++|+||.|.++++...+....-+.|
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~ 163 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDF 163 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeee
Confidence 7764333 35589999999999999999999999998888886 7899999999555555666689999
Q ss_pred CCeeEEEEeccCccC
Q psy3721 173 DGKPMKVQISTSRVR 187 (207)
Q Consensus 173 ~g~~i~v~~~~~~~~ 187 (207)
.|+.+.|..|-++..
T Consensus 164 ~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 164 NGKKVEVKRAIPKEV 178 (311)
T ss_pred cCceeeEeeccchhh
Confidence 999999999987743
No 36
>KOG1457|consensus
Probab=99.74 E-value=4.6e-17 Score=123.87 Aligned_cols=144 Identities=19% Similarity=0.281 Sum_probs=119.5
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE---------CCEEEEEeCChHHHHHHHHHhcCCee---CCe
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---------KNYGFVHMENDEEGRTAIKELNGQIV---NEK 97 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~---------~~~~fV~f~~~~~a~~a~~~l~~~~~---~g~ 97 (207)
..+...++|||.+||.++...||..+|.+|.--....+. +-+||++|.+..+|..|++.|+|..| .+.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 344568999999999999999999999998655554444 25899999999999999999999999 567
Q ss_pred eeEEEEcccCCCC-------------------------------------------------------------------
Q psy3721 98 PLKIEAATSRKGP------------------------------------------------------------------- 110 (207)
Q Consensus 98 ~i~v~~~~~~~~~------------------------------------------------------------------- 110 (207)
.|+++.++...+.
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 8888877543210
Q ss_pred ------------------CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-c---CEEEEEEcc-HhHHHHHHHh
Q psy3721 111 ------------------NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-R---NYGFVHIDS-PDINKCIKEL 167 (207)
Q Consensus 111 ------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-~---~~afv~f~~-e~a~~A~~~l 167 (207)
...+.+|||.||...+++++|+.+|+.|-....+++. | ..||++|++ +.|..||..|
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHh
Confidence 0034689999999999999999999999888887776 2 379999999 9999999999
Q ss_pred CCceeC
Q psy3721 168 NGMMVD 173 (207)
Q Consensus 168 ~g~~~~ 173 (207)
.|..+-
T Consensus 269 qg~~~s 274 (284)
T KOG1457|consen 269 QGNLLS 274 (284)
T ss_pred hcceec
Confidence 998763
No 37
>KOG0110|consensus
Probab=99.73 E-value=5.3e-17 Score=140.70 Aligned_cols=152 Identities=26% Similarity=0.398 Sum_probs=132.7
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECC--EEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCC
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~--~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 109 (207)
.-+.+.++|+|||..+..++|...|..||+|.++.++.+ .++|+|.++.+|..|++.|.+..+....+.+.|+....-
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf 461 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVF 461 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhc
Confidence 345689999999999999999999999999999966643 589999999999999999999999998888888743210
Q ss_pred C-----------------------------------C--------------CCCceeeecCCCCCCChhHHHHhcccCCc
Q psy3721 110 P-----------------------------------N--------------TPTTKVFVGNLSDNTRAPEVRELFVPYGT 140 (207)
Q Consensus 110 ~-----------------------------------~--------------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~ 140 (207)
. . ....+|||.||+++++.+++...|...|.
T Consensus 462 ~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~ 541 (725)
T KOG0110|consen 462 TEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGT 541 (725)
T ss_pred cCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCe
Confidence 0 0 01134999999999999999999999999
Q ss_pred EEEEEEe-----------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 141 VVECDIV-----------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 141 i~~~~~~-----------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
|.++.+. .|||||+|.+ ++|..|+..|+|+.+.|+.|.|+++.
T Consensus 542 VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 542 VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999886 2899999999 99999999999999999999999998
No 38
>KOG0147|consensus
Probab=99.72 E-value=1.4e-17 Score=140.70 Aligned_cols=156 Identities=24% Similarity=0.465 Sum_probs=136.3
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
.....+++|+.-|+...++.+|.+||+..|+|.++.++ +|.|||+|.+.+.+-.|+ .|.|+.+.|..|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 34557899999999999999999999999999999987 689999999999999999 899999999999998
Q ss_pred EcccCCCC-------------CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhH
Q psy3721 103 AATSRKGP-------------NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDI 160 (207)
Q Consensus 103 ~~~~~~~~-------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a 160 (207)
..-...+. ..+-..|||+||-.++++++|+.+|++||.|..+.+. +|||||+|.. ++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 76433211 1122339999999999999999999999999999887 7899999999 999
Q ss_pred HHHHHHhCCceeCCeeEEEEeccCccC
Q psy3721 161 NKCIKELNGMMVDGKPMKVQISTSRVR 187 (207)
Q Consensus 161 ~~A~~~l~g~~~~g~~i~v~~~~~~~~ 187 (207)
.+|+..|||..+-|+.|+|........
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeeecc
Confidence 999999999999999999988776543
No 39
>KOG0124|consensus
Probab=99.70 E-value=8e-17 Score=130.41 Aligned_cols=174 Identities=21% Similarity=0.356 Sum_probs=147.8
Q ss_pred hhhhhccccccceeecccCCCCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCCh
Q psy3721 8 QLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMEND 79 (207)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~ 79 (207)
++.|+++.+|+..+.++.-+-..+...-.+|||..+.++.+++||+..|+.||+|..|++. +|||||+|.+.
T Consensus 183 RNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~ 262 (544)
T KOG0124|consen 183 RNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL 262 (544)
T ss_pred ccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccc
Confidence 3457888899988888877777777788999999999999999999999999999999997 68999999999
Q ss_pred HHHHHHHHHhcCCeeCCeeeEEEEcccCCCC-------------------------------------------------
Q psy3721 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP------------------------------------------------- 110 (207)
Q Consensus 80 ~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~------------------------------------------------- 110 (207)
..-..|+..+|-+.++|..|+|..+......
T Consensus 263 qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA 342 (544)
T KOG0124|consen 263 QSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPA 342 (544)
T ss_pred cchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCcc
Confidence 9999999999999999999999988654310
Q ss_pred --------------------------------------------------------------------------------
Q psy3721 111 -------------------------------------------------------------------------------- 110 (207)
Q Consensus 111 -------------------------------------------------------------------------------- 110 (207)
T Consensus 343 ~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~Q 422 (544)
T KOG0124|consen 343 PRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQ 422 (544)
T ss_pred ccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhh
Confidence
Q ss_pred --------------------CCCCceeeecCC--CCCCC---hhHHHHhcccCCcEEEEEEecC------------EEEE
Q psy3721 111 --------------------NTPTTKVFVGNL--SDNTR---APEVRELFVPYGTVVECDIVRN------------YGFV 153 (207)
Q Consensus 111 --------------------~~~~~~l~v~nl--~~~~t---~~~l~~~f~~~g~i~~~~~~~~------------~afv 153 (207)
...++.|.+.|+ |.+++ +.+|++.|.+||.|.++.+.+. .-||
T Consensus 423 E~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFV 502 (544)
T KOG0124|consen 423 EHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFV 502 (544)
T ss_pred hCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeee
Confidence 003467778886 55555 4789999999999999888621 5799
Q ss_pred EEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 154 HIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 154 ~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
+|.. .++.+|...|||..|+|+++.-..
T Consensus 503 efS~~~e~~rak~ALdGRfFgGr~VvAE~ 531 (544)
T KOG0124|consen 503 EFSIASETHRAKQALDGRFFGGRKVVAEV 531 (544)
T ss_pred eechhhHHHHHHHhhccceecCceeehhh
Confidence 9999 999999999999999999887543
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=3.7e-16 Score=115.02 Aligned_cols=90 Identities=28% Similarity=0.563 Sum_probs=78.4
Q ss_pred eeecccCCCCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcC
Q psy3721 20 INISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNG 91 (207)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~ 91 (207)
.+.+...+-..-....++|||+|||+.+++++|+++|+.||.|.++.+. ++||||+|.+.++|+.|++.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng 98 (144)
T PLN03134 19 GNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDG 98 (144)
T ss_pred CCCccccccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC
Confidence 3444445555555678899999999999999999999999999999886 58999999999999999999999
Q ss_pred CeeCCeeeEEEEcccCCC
Q psy3721 92 QIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 92 ~~~~g~~i~v~~~~~~~~ 109 (207)
..+.|+.|+|.++..+..
T Consensus 99 ~~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 99 KELNGRHIRVNPANDRPS 116 (144)
T ss_pred CEECCEEEEEEeCCcCCC
Confidence 999999999999876543
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=7.7e-16 Score=113.29 Aligned_cols=76 Identities=29% Similarity=0.607 Sum_probs=70.7
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
..+.+|||+|||+++++++|+++|++||.|.++.++ ++||||+|.+ ++|++|+..|||..++|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 346789999999999999999999999999999996 6899999999 9999999999999999999999999
Q ss_pred cCccC
Q psy3721 183 TSRVR 187 (207)
Q Consensus 183 ~~~~~ 187 (207)
+++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 87653
No 42
>KOG1190|consensus
Probab=99.67 E-value=1.7e-15 Score=124.21 Aligned_cols=151 Identities=17% Similarity=0.383 Sum_probs=131.9
Q ss_pred cccEEEcCCCCC-CCHHHHHHHhhcCCceEEEEEE---CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCC-
Q psy3721 35 TFKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVV---KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG- 109 (207)
Q Consensus 35 ~~~l~V~~lp~~-~t~~~l~~~f~~~g~i~~i~~~---~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~- 109 (207)
.+.|.|.||-.. +|.+.|..+|+.||+|.+|++. +..|+|++.+...|+.|+..|+|.+++|+.|+|.+++...-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 578889998865 9999999999999999999998 67999999999999999999999999999999999864321
Q ss_pred ---------------------------------CCCCCceeeecCCCCCCChhHHHHhcccCCc-EEEEEEe---cCEEE
Q psy3721 110 ---------------------------------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGT-VVECDIV---RNYGF 152 (207)
Q Consensus 110 ---------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~-i~~~~~~---~~~af 152 (207)
--+++.+|+..|+|.++++++++..|..-|. ++-.++. +.++.
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 0135679999999999999999999988885 4555555 67999
Q ss_pred EEEcc-HhHHHHHHHhCCceeCCe-eEEEEeccCc
Q psy3721 153 VHIDS-PDINKCIKELNGMMVDGK-PMKVQISTSR 185 (207)
Q Consensus 153 v~f~~-e~a~~A~~~l~g~~~~g~-~i~v~~~~~~ 185 (207)
+.+.+ |+|..|+..++.+.+++. .++|+|+++.
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 99999 999999999999998664 9999999864
No 43
>KOG0147|consensus
Probab=99.65 E-value=1.2e-15 Score=129.13 Aligned_cols=151 Identities=23% Similarity=0.416 Sum_probs=123.2
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
+..+|||+||+.++++++|+..|++||.|..|.+. +|||||+|.+.++|++|+..|+|..+-|+.|+|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 34459999999999999999999999999998887 6899999999999999999999999999999987654
Q ss_pred cCCCC-----------------------------------------------------------------------C---
Q psy3721 106 SRKGP-----------------------------------------------------------------------N--- 111 (207)
Q Consensus 106 ~~~~~-----------------------------------------------------------------------~--- 111 (207)
..... .
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 32110 0
Q ss_pred ----CCCceeeecCCCC--CCC--------hhHHHHhcccCCcEEEEEEec---CEEEEEEcc-HhHHHHHHHhCCceeC
Q psy3721 112 ----TPTTKVFVGNLSD--NTR--------APEVRELFVPYGTVVECDIVR---NYGFVHIDS-PDINKCIKELNGMMVD 173 (207)
Q Consensus 112 ----~~~~~l~v~nl~~--~~t--------~~~l~~~f~~~g~i~~~~~~~---~~afv~f~~-e~a~~A~~~l~g~~~~ 173 (207)
.++.++.+.|+=. ..| .+++.+.+.+||.|.+|.+.+ |+.||+|.+ +.|..|.+.|||..|.
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~ 516 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFA 516 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhc
Confidence 1122334444422 122 177888899999999999984 689999999 9999999999999999
Q ss_pred CeeEEEEeccC
Q psy3721 174 GKPMKVQISTS 184 (207)
Q Consensus 174 g~~i~v~~~~~ 184 (207)
|+.|+.+|-..
T Consensus 517 gr~Ita~~~~~ 527 (549)
T KOG0147|consen 517 GRMITAKYLPL 527 (549)
T ss_pred cceeEEEEeeh
Confidence 99999998763
No 44
>KOG4211|consensus
Probab=99.62 E-value=1.2e-14 Score=121.68 Aligned_cols=148 Identities=14% Similarity=0.226 Sum_probs=122.6
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
.....|-+.+||++||++||.+||+.++ |.++.+. .|-|||+|.++|++++|++ .+...+..+.|.|..+..
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 3456788999999999999999999985 7776665 4689999999999999995 588899999999988855
Q ss_pred CCC--------CC--CCCceeeecCCCCCCChhHHHHhcccCCcEEE-EEEe-------cCEEEEEEcc-HhHHHHHHHh
Q psy3721 107 RKG--------PN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE-CDIV-------RNYGFVHIDS-PDINKCIKEL 167 (207)
Q Consensus 107 ~~~--------~~--~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~-~~~~-------~~~afv~f~~-e~a~~A~~~l 167 (207)
... +. .+...|-+.+||+.|++++|.++|+..-.+.. +.++ -+.|||+|++ +.|++|+..
T Consensus 86 ~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r- 164 (510)
T KOG4211|consen 86 AEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR- 164 (510)
T ss_pred ccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-
Confidence 432 11 24568889999999999999999998865555 3333 4689999999 999999988
Q ss_pred CCceeCCeeEEEEecc
Q psy3721 168 NGMMVDGKPMKVQIST 183 (207)
Q Consensus 168 ~g~~~~g~~i~v~~~~ 183 (207)
|...++.+.|.|..+.
T Consensus 165 hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 165 HRENIGHRYIEVFRSS 180 (510)
T ss_pred HHHhhccceEEeehhH
Confidence 7888888999988776
No 45
>KOG1190|consensus
Probab=99.62 E-value=3.9e-14 Score=116.31 Aligned_cols=166 Identities=19% Similarity=0.320 Sum_probs=136.2
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE---CC-EEEEEeCChHHHHHHHHHhcCCeeCC--eeeEEEEcccC
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---KN-YGFVHMENDEEGRTAIKELNGQIVNE--KPLKIEAATSR 107 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~---~~-~~fV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~~ 107 (207)
...++.|.++-+.++.|.|..+|++||.|.+|... .+ .|+|+|.+.+.|..|-..|+|..+.+ +.|++.++.-.
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt 228 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLT 228 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcc
Confidence 45678999999999999999999999999888765 23 48999999999999999999998854 34555444211
Q ss_pred ----------CCC---------------------------------------------------CC-CCceeeecCCCC-
Q psy3721 108 ----------KGP---------------------------------------------------NT-PTTKVFVGNLSD- 124 (207)
Q Consensus 108 ----------~~~---------------------------------------------------~~-~~~~l~v~nl~~- 124 (207)
.++ .+ .+..|.|.||..
T Consensus 229 ~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~ 308 (492)
T KOG1190|consen 229 DLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEE 308 (492)
T ss_pred cceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchh
Confidence 000 00 136788888876
Q ss_pred CCChhHHHHhcccCCcEEEEEEe---cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccCCCCCCCcccCCC
Q psy3721 125 NTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQ 199 (207)
Q Consensus 125 ~~t~~~l~~~f~~~g~i~~~~~~---~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~ 199 (207)
.+|.+.|..+|.-||.|.++++. +..|.|+|.+ ..|+-|+.+|+|..++|+.|+|.+++...-.-|..+++..+.
T Consensus 309 ~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~gl 387 (492)
T KOG1190|consen 309 AVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGL 387 (492)
T ss_pred ccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccc
Confidence 69999999999999999999998 5689999999 999999999999999999999999998876666666665553
No 46
>KOG0107|consensus
Probab=99.60 E-value=3.4e-15 Score=109.74 Aligned_cols=77 Identities=23% Similarity=0.484 Sum_probs=71.8
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE---CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCC
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~---~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 109 (207)
...++|||+||+..+++.||+..|..||++.++|+. .|||||+|+++.+|+.|+..|+|..+.|..|+|+.+.....
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 346899999999999999999999999999999997 68999999999999999999999999999999999876543
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=1e-14 Score=93.79 Aligned_cols=63 Identities=33% Similarity=0.767 Sum_probs=59.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeE
Q psy3721 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLK 100 (207)
Q Consensus 38 l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 100 (207)
|||+|||+++|+++|+++|+.||.+..+.+. +++|||+|.+.++|+.|++.+++..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999888887 46999999999999999999999999999885
No 48
>KOG4212|consensus
Probab=99.57 E-value=1.6e-13 Score=113.68 Aligned_cols=149 Identities=20% Similarity=0.319 Sum_probs=129.4
Q ss_pred cccEEEcCCCCCCCHHHHHHHhhc-CCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 35 TFKIFIGNVNPGTSVELIRPLFEK-YGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~l~~~f~~-~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
.+.+||.|||++....+|+++|.+ .|+|..+.+. +++|.|+|+++|.+++|++.|+...+.|++|+|+....
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 455999999999999999999985 5888888886 78999999999999999999999999999999986544
Q ss_pred CCC-----------------------------------------------------------------------------
Q psy3721 107 RKG----------------------------------------------------------------------------- 109 (207)
Q Consensus 107 ~~~----------------------------------------------------------------------------- 109 (207)
...
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 210
Q ss_pred -------CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCC
Q psy3721 110 -------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDG 174 (207)
Q Consensus 110 -------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g 174 (207)
.++-...+||.||.+.+....|++.|.-.|.+..+.+. ++++.++|++ -+|.+|+..|++.-+..
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD 283 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc
Confidence 01124679999999999999999999999999988775 7899999999 99999999999988888
Q ss_pred eeEEEEecc
Q psy3721 175 KPMKVQIST 183 (207)
Q Consensus 175 ~~i~v~~~~ 183 (207)
++..++..+
T Consensus 284 ~~~~~Rl~~ 292 (608)
T KOG4212|consen 284 RRMTVRLDR 292 (608)
T ss_pred ccceeeccc
Confidence 888888755
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.56 E-value=2.4e-14 Score=91.98 Aligned_cols=62 Identities=31% Similarity=0.744 Sum_probs=59.0
Q ss_pred eeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEE
Q psy3721 117 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMK 178 (207)
Q Consensus 117 l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~ 178 (207)
|||+|||.++++++|+++|+.||.+..+.+. +++|||+|.+ ++|.+|+..|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999887 4699999999 999999999999999999985
No 50
>KOG1548|consensus
Probab=99.55 E-value=2.3e-13 Score=109.73 Aligned_cols=153 Identities=16% Similarity=0.274 Sum_probs=126.4
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceE--------EEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCe
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEK 97 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~--------~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~ 97 (207)
.-.+.|||.|||.++|.+++.++|+.||.|. .|++. +|=|++.|-..+++..|++.|++..+.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3456799999999999999999999999884 35554 67899999999999999999999999999
Q ss_pred eeEEEEcccCCC-------------------------------------CCCCCceeeecCCCC----CCC-------hh
Q psy3721 98 PLKIEAATSRKG-------------------------------------PNTPTTKVFVGNLSD----NTR-------AP 129 (207)
Q Consensus 98 ~i~v~~~~~~~~-------------------------------------~~~~~~~l~v~nl~~----~~t-------~~ 129 (207)
.|+|+.+..... .....++|.+.|+=. ..+ .+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 999998854321 011346788888622 122 37
Q ss_pred HHHHhcccCCcEEEEEEe----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 130 EVRELFVPYGTVVECDIV----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 130 ~l~~~f~~~g~i~~~~~~----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
+|++-+.+||.|..+.+. .|.+-|.|.+ ++|..++..|+|..|+|+.|.-.....+
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 788889999999999886 6899999999 9999999999999999999997776544
No 51
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.50 E-value=2.1e-13 Score=107.80 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=68.1
Q ss_pred cccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-----CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCC
Q psy3721 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-----~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 108 (207)
.++|||+|||+.+++++|+++|+.||.|.++.+. ++||||+|.++++|+.|+ .|+|..+.|+.|.|.++....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccCCC
Confidence 5799999999999999999999999999999996 589999999999999999 599999999999999987544
No 52
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.50 E-value=1.1e-13 Score=115.49 Aligned_cols=77 Identities=31% Similarity=0.506 Sum_probs=70.9
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
.....++|||+|||+++++++|+++|+.||.|++|+++ ++||||+|.+ ++|.+|+..|||..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34457899999999999999999999999999999996 4799999999 99999999999999999999999
Q ss_pred eccCcc
Q psy3721 181 ISTSRV 186 (207)
Q Consensus 181 ~~~~~~ 186 (207)
|+++..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 998653
No 53
>KOG0125|consensus
Probab=99.49 E-value=1.2e-13 Score=110.63 Aligned_cols=94 Identities=26% Similarity=0.614 Sum_probs=78.5
Q ss_pred CeeCCeeeEEEEcccCCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe------cCEEEEEEcc-HhHHHHH
Q psy3721 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCI 164 (207)
Q Consensus 92 ~~~~g~~i~v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~------~~~afv~f~~-e~a~~A~ 164 (207)
....|..+.+..+.... .....++|+|+|||+...+-||+..|.+||.|.++.++ ||||||+|++ +||.+|-
T Consensus 75 ~~t~g~~~~~~~st~s~-s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRAR 153 (376)
T KOG0125|consen 75 APTDGQPIQTQPSTNSS-SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRAR 153 (376)
T ss_pred CCCCCCccccCCCCcCC-CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHH
Confidence 33444444544443332 22345789999999999999999999999999999997 8899999999 9999999
Q ss_pred HHhCCceeCCeeEEEEeccCcc
Q psy3721 165 KELNGMMVDGKPMKVQISTSRV 186 (207)
Q Consensus 165 ~~l~g~~~~g~~i~v~~~~~~~ 186 (207)
.+|||+.+.||+|.|.-++.+.
T Consensus 154 a~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 154 AELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred HHhhcceeeceEEEEeccchhh
Confidence 9999999999999999998764
No 54
>KOG0107|consensus
Probab=99.49 E-value=1.1e-13 Score=101.80 Aligned_cols=78 Identities=28% Similarity=0.516 Sum_probs=72.1
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEEEe---cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccCCC
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~---~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~ 189 (207)
.+.|||+||+...+..+|...|..||.+..+.+- +|||||+|++ .+|..|+..|||..|.|..|+|.+++...+..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r~~ 89 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPRGS 89 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcccc
Confidence 5789999999999999999999999999999886 7899999999 99999999999999999999999998776644
Q ss_pred CC
Q psy3721 190 PG 191 (207)
Q Consensus 190 ~~ 191 (207)
..
T Consensus 90 r~ 91 (195)
T KOG0107|consen 90 RR 91 (195)
T ss_pred cc
Confidence 43
No 55
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.46 E-value=4.6e-13 Score=86.35 Aligned_cols=63 Identities=27% Similarity=0.679 Sum_probs=57.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeE
Q psy3721 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLK 100 (207)
Q Consensus 38 l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 100 (207)
|||+|||+++++++|+++|+.+|.|..+.+. +++|||+|.++++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999998887 37999999999999999999999999999874
No 56
>KOG0125|consensus
Probab=99.45 E-value=2.7e-13 Score=108.65 Aligned_cols=76 Identities=30% Similarity=0.573 Sum_probs=71.2
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
+....+|+|.|||...-|-||+..|..||+|.++.|+ ||||||+|++.+||++|..+|||..+.||+|.|..+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 3556899999999999999999999999999999998 7999999999999999999999999999999999886
Q ss_pred cC
Q psy3721 106 SR 107 (207)
Q Consensus 106 ~~ 107 (207)
..
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 54
No 57
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.45 E-value=5.6e-13 Score=105.38 Aligned_cols=71 Identities=14% Similarity=0.270 Sum_probs=66.3
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
.++|||+|||+.+++++|+++|+.||.|.++.+. ++||||+|.+ ++|..|+. |||..+.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 4689999999999999999999999999999996 6799999999 99999995 9999999999999998744
No 58
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.44 E-value=2.6e-12 Score=102.68 Aligned_cols=113 Identities=31% Similarity=0.580 Sum_probs=98.8
Q ss_pred cccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc-
Q psy3721 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT- 105 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~- 105 (207)
.++|||+|||..+++++|+++|..||.+..+.+. +|||||+|.++++|..|+..+++..+.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999888776 6899999999999999999999999999999999953
Q ss_pred ---cCCCC-------------------CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe
Q psy3721 106 ---SRKGP-------------------NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 147 (207)
Q Consensus 106 ---~~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~ 147 (207)
..... ......+++.+++...+...+...|..+|.+....+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 21111 1235789999999999999999999999998666665
No 59
>KOG0120|consensus
Probab=99.43 E-value=1.1e-12 Score=112.13 Aligned_cols=154 Identities=21% Similarity=0.355 Sum_probs=123.8
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
......+||++||...+++++.++...||++....+. +||||.+|.++-....|+..|+|..++++.+.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 3556899999999999999999999999998766665 68999999999999999999999999999999988
Q ss_pred cccCCCCC-----------------------CCCceeeecCC--CCCCC--------hhHHHHhcccCCcEEEEEEec--
Q psy3721 104 ATSRKGPN-----------------------TPTTKVFVGNL--SDNTR--------APEVRELFVPYGTVVECDIVR-- 148 (207)
Q Consensus 104 ~~~~~~~~-----------------------~~~~~l~v~nl--~~~~t--------~~~l~~~f~~~g~i~~~~~~~-- 148 (207)
+....... .+...|+..|+ |.... -++++..+.+||.|..|.+++
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~ 445 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPY 445 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCC
Confidence 75432210 11222333322 11111 177788899999999999973
Q ss_pred ---------CEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 149 ---------NYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 149 ---------~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
|..||+|.+ +++++|+.+|+|..|.|+.|...|-.+.
T Consensus 446 ~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 446 PDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 479999999 9999999999999999999999987653
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.43 E-value=1.3e-12 Score=84.22 Aligned_cols=62 Identities=29% Similarity=0.679 Sum_probs=56.7
Q ss_pred eeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEE
Q psy3721 117 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMK 178 (207)
Q Consensus 117 l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~ 178 (207)
|||+|||+++++++|+++|+.||.|..+.+. +++|||+|.+ ++|.+|+..++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999887 4799999999 999999999999999999885
No 61
>KOG0114|consensus
Probab=99.42 E-value=9.2e-13 Score=88.98 Aligned_cols=74 Identities=26% Similarity=0.358 Sum_probs=69.6
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
.-+..|||.|||+.+|.++..++|.+||.|..|++- +|-|||.|++ .+|.+|+.+|+|..+.++.+.|-|..+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 346789999999999999999999999999999996 8899999999 9999999999999999999999998765
No 62
>KOG0121|consensus
Probab=99.42 E-value=4.1e-13 Score=94.06 Aligned_cols=73 Identities=21% Similarity=0.414 Sum_probs=67.8
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
..+++|||+||+..++|+.|.++|+.+|+|..|.+- =|||||+|-+.++|..|++.+++..+..+.|++.|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 457899999999999999999999999999998774 279999999999999999999999999999999986
Q ss_pred c
Q psy3721 105 T 105 (207)
Q Consensus 105 ~ 105 (207)
-
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 63
>KOG0122|consensus
Probab=99.40 E-value=1.8e-12 Score=100.20 Aligned_cols=77 Identities=19% Similarity=0.355 Sum_probs=72.3
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
+..+..+|-|.||+.++++++|.+||..||.|.++.+. +|||||+|.+.++|.+|+..|+|.-+.+-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 45577899999999999999999999999999999987 7899999999999999999999999999999999
Q ss_pred EcccC
Q psy3721 103 AATSR 107 (207)
Q Consensus 103 ~~~~~ 107 (207)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99875
No 64
>KOG0109|consensus
Probab=99.36 E-value=1.5e-12 Score=102.96 Aligned_cols=81 Identities=38% Similarity=0.737 Sum_probs=73.4
Q ss_pred ceeeecCCCCCCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccCCCCCCC
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVD 193 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~ 193 (207)
..|||+|||...++.+|+.+|++||+|..|+++|+||||..++ ..|..|+..|||-.|+|..|+|.-++.+.......+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stkl~ 82 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTKLH 82 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccccc
Confidence 3699999999999999999999999999999999999999999 999999999999999999999999998854444444
Q ss_pred cc
Q psy3721 194 EV 195 (207)
Q Consensus 194 ~~ 195 (207)
++
T Consensus 83 vg 84 (346)
T KOG0109|consen 83 VG 84 (346)
T ss_pred cC
Confidence 43
No 65
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=6.4e-12 Score=97.99 Aligned_cols=73 Identities=15% Similarity=0.307 Sum_probs=67.3
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEEC-----CEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccC
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK-----NYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~-----~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 107 (207)
..++|||+||++.+|+++|+++|+.||+|.++.+.+ ++|||+|+++++|+.|+ .|+|..+.++.|.|..+...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCccc
Confidence 457999999999999999999999999999999983 69999999999999999 79999999999999987643
No 66
>smart00362 RRM_2 RNA recognition motif.
Probab=99.36 E-value=8e-12 Score=79.68 Aligned_cols=65 Identities=31% Similarity=0.714 Sum_probs=60.8
Q ss_pred cEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--C----CEEEEEeCChHHHHHHHHHhcCCeeCCeeeEE
Q psy3721 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--K----NYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101 (207)
Q Consensus 37 ~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~----~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 101 (207)
+|||+|||+.+++++|+++|+.||.+..+.+. . ++|||+|.+.++|+.|+..+++..+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999988887 3 89999999999999999999999999998876
No 67
>KOG0114|consensus
Probab=99.35 E-value=6.9e-12 Score=84.78 Aligned_cols=76 Identities=21% Similarity=0.262 Sum_probs=70.4
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-----CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccC
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-----~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 107 (207)
+-.+.|||.|||.++|.+++.++|.+||.|+-|.+- +|-|||.|++..+|++|++.|.|..+.++.+.|-+..+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 567789999999999999999999999999998885 789999999999999999999999999999999988754
Q ss_pred C
Q psy3721 108 K 108 (207)
Q Consensus 108 ~ 108 (207)
.
T Consensus 96 ~ 96 (124)
T KOG0114|consen 96 D 96 (124)
T ss_pred H
Confidence 3
No 68
>PLN03213 repressor of silencing 3; Provisional
Probab=99.34 E-value=6e-12 Score=105.95 Aligned_cols=75 Identities=15% Similarity=0.347 Sum_probs=70.1
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE----CCEEEEEeCCh--HHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV----KNYGFVHMEND--EEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~----~~~~fV~f~~~--~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
....+||||||++.+++++|+.+|++||.|.++.++ ||||||+|.+. .++.+|+..|+|....|+.|+|..+++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 456899999999999999999999999999999998 78999999998 789999999999999999999999876
Q ss_pred C
Q psy3721 107 R 107 (207)
Q Consensus 107 ~ 107 (207)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 4
No 69
>KOG0121|consensus
Probab=99.34 E-value=2.9e-12 Score=89.84 Aligned_cols=73 Identities=25% Similarity=0.422 Sum_probs=67.7
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
.+++|||+||...++++.|.++|+.+|.|..|.+- =|||||+|.+ ++|..|+..++|+.++.++|++.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 47899999999999999999999999999999885 3699999999 99999999999999999999999986
Q ss_pred Cc
Q psy3721 184 SR 185 (207)
Q Consensus 184 ~~ 185 (207)
.-
T Consensus 115 GF 116 (153)
T KOG0121|consen 115 GF 116 (153)
T ss_pred cc
Confidence 44
No 70
>KOG0117|consensus
Probab=99.33 E-value=3.1e-12 Score=106.26 Aligned_cols=77 Identities=26% Similarity=0.503 Sum_probs=72.7
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCCC
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP 110 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 110 (207)
....|||+||+.++|++.|+++|++||.|.+|+.+++||||+|.+.++|-+||+.+++..+.|..|.|..+++..+.
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999887653
No 71
>PLN03213 repressor of silencing 3; Provisional
Probab=99.32 E-value=5.7e-12 Score=106.06 Aligned_cols=73 Identities=19% Similarity=0.476 Sum_probs=68.1
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe----cCEEEEEEcc---HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----RNYGFVHIDS---PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~----~~~afv~f~~---e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
...+||||||++.+++++|+..|..||.|.++.++ ||||||+|.+ .++.+|+..|||..+.|+.|+|..+++.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 45789999999999999999999999999999998 7899999986 3689999999999999999999999965
No 72
>smart00362 RRM_2 RNA recognition motif.
Probab=99.32 E-value=1.3e-11 Score=78.71 Aligned_cols=65 Identities=34% Similarity=0.726 Sum_probs=60.6
Q ss_pred eeeecCCCCCCChhHHHHhcccCCcEEEEEEe--c----CEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--R----NYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 116 ~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~----~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
+|+|+|||..+++++|+++|..||.+..+.+. + ++|||+|.+ ++|.+|+..++|..+.|+.+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999887 3 899999999 99999999999999999998863
No 73
>KOG0122|consensus
Probab=99.32 E-value=7.2e-12 Score=96.84 Aligned_cols=73 Identities=30% Similarity=0.547 Sum_probs=69.6
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
..++|-|.||+.++++.+|.++|.+||.|.++.+. ||||||.|.+ ++|++|+..|||.-+++=-|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 45789999999999999999999999999999987 7899999999 99999999999999999999999999
Q ss_pred Cc
Q psy3721 184 SR 185 (207)
Q Consensus 184 ~~ 185 (207)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 74
>KOG0111|consensus
Probab=99.32 E-value=1.5e-12 Score=99.26 Aligned_cols=76 Identities=22% Similarity=0.538 Sum_probs=71.7
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
..++|||++|...+++.-|...|=+||.|++|.++ |+||||+|.- |+|..|+..||+..+.|+.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 35799999999999999999999999999999997 8899999999 99999999999999999999999999
Q ss_pred CccCC
Q psy3721 184 SRVRQ 188 (207)
Q Consensus 184 ~~~~~ 188 (207)
|.+.+
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 87543
No 75
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.31 E-value=1.8e-11 Score=75.45 Aligned_cols=52 Identities=35% Similarity=0.684 Sum_probs=48.3
Q ss_pred HHHhcccCCcEEEEEEec---CEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 131 VRELFVPYGTVVECDIVR---NYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 131 l~~~f~~~g~i~~~~~~~---~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
|+++|++||.|..+.+.+ ++|||+|.+ ++|.+|+..|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678999999999999984 899999999 9999999999999999999999986
No 76
>KOG4207|consensus
Probab=99.31 E-value=3.8e-12 Score=96.16 Aligned_cols=76 Identities=22% Similarity=0.499 Sum_probs=71.2
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
+-++.++|.|.||-+.++.++|+.+|+.||.|-+|.|. +|||||-|....+|+.|++.|+|..+.|++|.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 45678899999999999999999999999999999998 6899999999999999999999999999999998
Q ss_pred Eccc
Q psy3721 103 AATS 106 (207)
Q Consensus 103 ~~~~ 106 (207)
.+.-
T Consensus 89 ~ary 92 (256)
T KOG4207|consen 89 MARY 92 (256)
T ss_pred hhhc
Confidence 8754
No 77
>KOG4207|consensus
Probab=99.31 E-value=4.3e-12 Score=95.89 Aligned_cols=74 Identities=27% Similarity=0.513 Sum_probs=69.2
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccC
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTS 184 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~ 184 (207)
-..|-|.||.+.++.++|+.+|++||.|-+|.++ +|||||.|.. .+|+.|+..|+|..|+|+.|+|.+++.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 4689999999999999999999999999999998 7899999999 999999999999999999999999985
Q ss_pred ccC
Q psy3721 185 RVR 187 (207)
Q Consensus 185 ~~~ 187 (207)
...
T Consensus 93 gr~ 95 (256)
T KOG4207|consen 93 GRP 95 (256)
T ss_pred CCC
Confidence 543
No 78
>KOG1456|consensus
Probab=99.30 E-value=8.5e-11 Score=95.95 Aligned_cols=156 Identities=15% Similarity=0.198 Sum_probs=124.8
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHH--hcCCeeCCeeeEEEEcc
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKE--LNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~--l~~~~~~g~~i~v~~~~ 105 (207)
-++..+-.|.|.+|-.+++|.+|.+..+.||.|.-+..+ +..|+|+|++.+-|+.++.- -+...+.|+...+.++.
T Consensus 26 hk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySt 105 (494)
T KOG1456|consen 26 HKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYST 105 (494)
T ss_pred CCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccch
Confidence 345566789999999999999999999999999777665 78999999999999998852 23345677777777764
Q ss_pred cCC------CCCCCCceeeec--CCCCCCChhHHHHhcccCCcEEEEEEecC---EEEEEEcc-HhHHHHHHHhCCceeC
Q psy3721 106 SRK------GPNTPTTKVFVG--NLSDNTRAPEVRELFVPYGTVVECDIVRN---YGFVHIDS-PDINKCIKELNGMMVD 173 (207)
Q Consensus 106 ~~~------~~~~~~~~l~v~--nl~~~~t~~~l~~~f~~~g~i~~~~~~~~---~afv~f~~-e~a~~A~~~l~g~~~~ 173 (207)
+.. +...++..|.+. |--+.+|-+.|+.++...|+|.+|.+++. -|.|+|++ +.|++|...|||..|+
T Consensus 106 sq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIY 185 (494)
T KOG1456|consen 106 SQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIY 185 (494)
T ss_pred hhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhccccccc
Confidence 432 122334445444 55567999999999999999999999854 69999999 9999999999999986
Q ss_pred C--eeEEEEeccCc
Q psy3721 174 G--KPMKVQISTSR 185 (207)
Q Consensus 174 g--~~i~v~~~~~~ 185 (207)
. -.|+|.|++|.
T Consensus 186 sGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 186 SGCCTLKIEYAKPT 199 (494)
T ss_pred ccceeEEEEecCcc
Confidence 5 57889999976
No 79
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.29 E-value=3.8e-11 Score=76.92 Aligned_cols=67 Identities=37% Similarity=0.772 Sum_probs=62.4
Q ss_pred cEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 37 ~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
+|+|+|||+.+++++|+++|+.+|.+..+.+. +++|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999988887 47999999999999999999999999999998864
No 80
>KOG0113|consensus
Probab=99.29 E-value=2e-11 Score=96.81 Aligned_cols=79 Identities=24% Similarity=0.447 Sum_probs=72.7
Q ss_pred CCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeee
Q psy3721 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPL 99 (207)
Q Consensus 28 ~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i 99 (207)
|....++.+||||+-|+++++|++|+..|+.||+|..|.++ +|||||+|+++.+-..|.+..+|..+.|+.|
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 44455889999999999999999999999999999999997 6899999999999999999999999999999
Q ss_pred EEEEccc
Q psy3721 100 KIEAATS 106 (207)
Q Consensus 100 ~v~~~~~ 106 (207)
.|..-..
T Consensus 174 ~VDvERg 180 (335)
T KOG0113|consen 174 LVDVERG 180 (335)
T ss_pred EEEeccc
Confidence 9987653
No 81
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.29 E-value=1.9e-11 Score=95.35 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=63.8
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
.+.+|||+||++.+|+++|+++|+.||.|.+|.+. +++|||+|.+ +++..|+ .|+|..|.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 46799999999999999999999999999999998 4699999999 7776666 889999999999998865
No 82
>KOG0105|consensus
Probab=99.28 E-value=9.4e-12 Score=92.57 Aligned_cols=73 Identities=26% Similarity=0.557 Sum_probs=68.7
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
..+.|||+|||.++.+.+|.++|.+||.|..|.+. ..||||+|++ .+|..|+..-+|-.++|..|+|.|++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 45789999999999999999999999999999996 5699999999 9999999999999999999999999855
No 83
>KOG0130|consensus
Probab=99.28 E-value=8.9e-12 Score=88.14 Aligned_cols=77 Identities=17% Similarity=0.370 Sum_probs=71.6
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
+..++.|||.++-...++++|.+.|..||.|+.+.+. +|||.|+|.+ ++|+.|+..+||..+.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 3457899999999999999999999999999999886 8899999999 999999999999999999999999
Q ss_pred ccCccC
Q psy3721 182 STSRVR 187 (207)
Q Consensus 182 ~~~~~~ 187 (207)
+..+++
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 986654
No 84
>KOG0130|consensus
Probab=99.27 E-value=1e-11 Score=87.87 Aligned_cols=78 Identities=24% Similarity=0.379 Sum_probs=71.8
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
...-.|||.++.+.+++++|.+.|..||+|.++.+. +|||+|+|++.+.|+.|+..+||..+.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 445678999999999999999999999999999886 789999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy3721 105 TSRKGP 110 (207)
Q Consensus 105 ~~~~~~ 110 (207)
..+..+
T Consensus 150 Fv~gp~ 155 (170)
T KOG0130|consen 150 FVKGPE 155 (170)
T ss_pred EecCCc
Confidence 876553
No 85
>KOG4212|consensus
Probab=99.27 E-value=1.9e-10 Score=95.73 Aligned_cols=68 Identities=26% Similarity=0.394 Sum_probs=63.6
Q ss_pred ceeeecCCCCCCChhHHHHhcccCCcEEEEEEe---cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~---~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
++|+|.|||.++|++.|++.|..||.|.+..+. +..+.|+|.+ ++|.+|+..|||..+.|+.|+|.|.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 679999999999999999999999999999886 4567899999 9999999999999999999999874
No 86
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.25 E-value=7.1e-11 Score=72.75 Aligned_cols=53 Identities=36% Similarity=0.683 Sum_probs=49.1
Q ss_pred HHHHhhcCCceEEEEEEC---CEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 52 IRPLFEKYGKVVECDVVK---NYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 52 l~~~f~~~g~i~~i~~~~---~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
|+++|++||+|.++.+.+ ++|||+|.+.++|+.|++.|++..+.|+.|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678999999999999984 89999999999999999999999999999999985
No 87
>KOG1456|consensus
Probab=99.25 E-value=6.3e-10 Score=90.97 Aligned_cols=148 Identities=22% Similarity=0.302 Sum_probs=125.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCceEEEEEECC---EEEEEeCChHHHHHHHHHhcCCeeCC--eeeEEEEcccCCC---
Q psy3721 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN---YGFVHMENDEEGRTAIKELNGQIVNE--KPLKIEAATSRKG--- 109 (207)
Q Consensus 38 l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~---~~fV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~~~~--- 109 (207)
+.|-|--+..|.+.|..++-..|+|.+|.+.+. .|.|+|.+-+.|++|-+.|+|..+.. +.|+++++++..-
T Consensus 125 ~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~ 204 (494)
T KOG1456|consen 125 FTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQ 204 (494)
T ss_pred EEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeee
Confidence 345666678999999999999999999998843 69999999999999999999998733 6788888866410
Q ss_pred ------------------------------------------------------------------------------CC
Q psy3721 110 ------------------------------------------------------------------------------PN 111 (207)
Q Consensus 110 ------------------------------------------------------------------------------~~ 111 (207)
..
T Consensus 205 knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~ 284 (494)
T KOG1456|consen 205 KNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGG 284 (494)
T ss_pred ecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCC
Confidence 00
Q ss_pred CCCceeeecCCCCC-CChhHHHHhcccCCcEEEEEEe---cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 112 TPTTKVFVGNLSDN-TRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 112 ~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~i~~~~~~---~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
.++..+.|.+|... +.-+.|..+|..||.|++++++ .|-|.|++.+ .+.++|+.+||+..+.|.+|.|.+++..
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 13568889999885 7778999999999999999998 5789999999 9999999999999999999999998854
No 88
>KOG0149|consensus
Probab=99.24 E-value=1.6e-11 Score=94.57 Aligned_cols=74 Identities=27% Similarity=0.534 Sum_probs=65.7
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
..-.+||||+|++.++.++|+++|++||+|++..++ ||||||+|.+ ++|.+|... ..-.|+||+..|.++
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 345689999999999999999999999999999887 8899999999 999999988 556689999999888
Q ss_pred cCcc
Q psy3721 183 TSRV 186 (207)
Q Consensus 183 ~~~~ 186 (207)
.-..
T Consensus 89 ~lg~ 92 (247)
T KOG0149|consen 89 SLGG 92 (247)
T ss_pred hhcC
Confidence 7533
No 89
>smart00360 RRM RNA recognition motif.
Probab=99.23 E-value=5.2e-11 Score=75.53 Aligned_cols=62 Identities=37% Similarity=0.777 Sum_probs=57.4
Q ss_pred EcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEE
Q psy3721 40 IGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101 (207)
Q Consensus 40 V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 101 (207)
|+|||..+++++|+++|+.||.|..+.+. +++|||+|.+.++|..|++.+++..+.|+.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 57999999999999999999999988887 359999999999999999999999999998876
No 90
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.23 E-value=9e-11 Score=75.12 Aligned_cols=66 Identities=35% Similarity=0.746 Sum_probs=61.7
Q ss_pred eeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 116 ~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
+|+|+|||..+++++|+++|..+|.+..+.+. +++|+|+|.+ ++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999887 4799999999 999999999999999999998864
No 91
>KOG0120|consensus
Probab=99.20 E-value=4.7e-11 Score=102.35 Aligned_cols=158 Identities=23% Similarity=0.417 Sum_probs=131.1
Q ss_pred CCCCCCCcccEEEcCCCCCCCHHHHHHHhhcC-----------C-ceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCe
Q psy3721 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKY-----------G-KVVECDVV--KNYGFVHMENDEEGRTAIKELNGQI 93 (207)
Q Consensus 28 ~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~-----------g-~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~ 93 (207)
.....-..+.+||+++|+.++++.+-.+|..- | .+..+.+. +++||++|.+.+.|..++ .+++..
T Consensus 168 ~~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~-~~~~~~ 246 (500)
T KOG0120|consen 168 DSQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAM-ALDGII 246 (500)
T ss_pred CcchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhh-cccchh
Confidence 33334456899999999999999999998653 3 25555555 789999999999999998 678988
Q ss_pred eCCeeeEEEEcccCCC----------------------CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe----
Q psy3721 94 VNEKPLKIEAATSRKG----------------------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---- 147 (207)
Q Consensus 94 ~~g~~i~v~~~~~~~~----------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~---- 147 (207)
+.|..+++........ .......+||++||..+++..++++...||.+....++
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~ 326 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA 326 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc
Confidence 9898887765543221 12245789999999999999999999999999998887
Q ss_pred ----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCcc
Q psy3721 148 ----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186 (207)
Q Consensus 148 ----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 186 (207)
++|||++|.+ ....+|+..|||..+++..+.|..+-...
T Consensus 327 ~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 327 TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred cccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 7899999999 99999999999999999999999987664
No 92
>smart00360 RRM RNA recognition motif.
Probab=99.20 E-value=7.1e-11 Score=74.89 Aligned_cols=62 Identities=39% Similarity=0.774 Sum_probs=57.2
Q ss_pred ecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 119 VGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 119 v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
|+|||..+++++|+++|+.||.|..+.+. +++|||+|.+ ++|.+|+..+++..+.|+.++|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999886 3599999999 99999999999999999998863
No 93
>KOG0132|consensus
Probab=99.19 E-value=5e-11 Score=104.93 Aligned_cols=104 Identities=14% Similarity=0.268 Sum_probs=84.0
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCCCC
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN 111 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~ 111 (207)
-++||||++|+..+++.||.++|++||+|.+|.+. +++|||.+.+.++|.+|+..|....+.++.|++.|+.......
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 46899999999999999999999999999999987 8999999999999999999999999999999999998776544
Q ss_pred --CCCc--eeeecCCCCCCChhHHHHhccc
Q psy3721 112 --TPTT--KVFVGNLSDNTRAPEVRELFVP 137 (207)
Q Consensus 112 --~~~~--~l~v~nl~~~~t~~~l~~~f~~ 137 (207)
...+ .+=|.-||+.--..+++.+++.
T Consensus 500 e~k~~wD~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 500 EYKDYWDVELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred hhhhhhhcccCeeEeehHhcCHHHHHhhhh
Confidence 1111 1224445665333336666543
No 94
>KOG0113|consensus
Probab=99.17 E-value=1.7e-10 Score=91.68 Aligned_cols=75 Identities=25% Similarity=0.581 Sum_probs=69.8
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
.+-.||||+-|++++++.+|+..|+.||.|+.|.++ +|||||+|.+ .+...|....+|..|+|+.|-|.+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 466899999999999999999999999999999998 7899999999 8999999999999999999999998
Q ss_pred cCcc
Q psy3721 183 TSRV 186 (207)
Q Consensus 183 ~~~~ 186 (207)
+...
T Consensus 179 RgRT 182 (335)
T KOG0113|consen 179 RGRT 182 (335)
T ss_pred cccc
Confidence 7543
No 95
>KOG0111|consensus
Probab=99.17 E-value=3.2e-11 Score=92.03 Aligned_cols=78 Identities=17% Similarity=0.419 Sum_probs=72.7
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
...++|||++|...++|..|-..|-+||+|.+|+++ ||||||+|.-.|+|..|+.-+++..+.|+.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 457899999999999999999999999999999997 789999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy3721 105 TSRKGP 110 (207)
Q Consensus 105 ~~~~~~ 110 (207)
.+..-.
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 876543
No 96
>KOG0153|consensus
Probab=99.16 E-value=1.6e-10 Score=93.50 Aligned_cols=76 Identities=20% Similarity=0.507 Sum_probs=68.1
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHH-hCCceeCCeeEEEEeccCc
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKE-LNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~-l~g~~~~g~~i~v~~~~~~ 185 (207)
+.....+|||++|...+++.+|+++|.+||+|+++.+. +++|||+|.+ ++|..|+.+ +|...+.|.+|+|.|+++.
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRPK 303 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCCc
Confidence 44556899999999999999999999999999999998 7799999999 999999877 5656689999999999994
No 97
>KOG0129|consensus
Probab=99.16 E-value=8.2e-10 Score=93.63 Aligned_cols=133 Identities=22% Similarity=0.300 Sum_probs=102.3
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEE----------ECC---EEEEEeCChHHHHHHHHHhcC----Cee--
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDV----------VKN---YGFVHMENDEEGRTAIKELNG----QIV-- 94 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~----------~~~---~~fV~f~~~~~a~~a~~~l~~----~~~-- 94 (207)
-++.|||++||++++|++|...|..||.+.-=+- .+| |.|+-|+++..++..+..... ..|
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~v 337 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKV 337 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEE
Confidence 4689999999999999999999999998753332 156 999999999999887764432 111
Q ss_pred -----CCeeeEEEEcccCC--------CCCCCCceeeecCCCCCCChhHHHHhcc-cCCcEEEEEEe--------cCEEE
Q psy3721 95 -----NEKPLKIEAATSRK--------GPNTPTTKVFVGNLSDNTRAPEVRELFV-PYGTVVECDIV--------RNYGF 152 (207)
Q Consensus 95 -----~g~~i~v~~~~~~~--------~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~g~i~~~~~~--------~~~af 152 (207)
..+.+.|.++...+ .+-.+..|||||+||.-++.++|-.+|. .||.|..+-+. +|.|.
T Consensus 338 ss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGR 417 (520)
T KOG0129|consen 338 SSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGR 417 (520)
T ss_pred ecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcce
Confidence 22334444333221 2345789999999999999999999998 99999988775 78999
Q ss_pred EEEcc-HhHHHHHHH
Q psy3721 153 VHIDS-PDINKCIKE 166 (207)
Q Consensus 153 v~f~~-e~a~~A~~~ 166 (207)
|.|.+ .+=.+|+..
T Consensus 418 VtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 418 VTFSNQQAYIKAISA 432 (520)
T ss_pred eeecccHHHHHHHhh
Confidence 99999 777777765
No 98
>KOG0149|consensus
Probab=99.15 E-value=8.3e-11 Score=90.63 Aligned_cols=72 Identities=32% Similarity=0.538 Sum_probs=61.6
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
.-++|||++|++.+..++|++.|+.||+|.+..+. +|||||+|++.+.|.+|++. ..-.+.||+..+..+.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 35789999999999999999999999999988887 78999999999999999963 3445678877776665
Q ss_pred c
Q psy3721 106 S 106 (207)
Q Consensus 106 ~ 106 (207)
.
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 99
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.12 E-value=3.1e-10 Score=90.55 Aligned_cols=71 Identities=37% Similarity=0.711 Sum_probs=67.2
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccC
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTS 184 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~ 184 (207)
..+|||+|||..+++++|+++|..||.+..+.+. +|+|||+|.+ ++|..|+..++|..+.|+.|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999888886 6899999999 999999999999999999999999753
No 100
>KOG0108|consensus
Probab=99.12 E-value=2.5e-10 Score=97.14 Aligned_cols=73 Identities=32% Similarity=0.575 Sum_probs=69.5
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccC
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 107 (207)
+.|||||||+.+++++|.++|+..|.|.++++. +||||++|.+.++|..|++.|+|..+.|+.|+|.|....
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999987 789999999999999999999999999999999998654
Q ss_pred C
Q psy3721 108 K 108 (207)
Q Consensus 108 ~ 108 (207)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 101
>KOG4206|consensus
Probab=99.11 E-value=2.2e-10 Score=87.86 Aligned_cols=74 Identities=24% Similarity=0.565 Sum_probs=68.7
Q ss_pred CCceeeecCCCCCCChhHHHH----hcccCCcEEEEEEe-----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRE----LFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~----~f~~~g~i~~~~~~-----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
++.+|||.||++.+..++|+. +|+.||.|.+|... +|-|||.|.+ +.|..|+..|+|..+.|+++++.||
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 345999999999999999988 99999999999887 7899999999 9999999999999999999999999
Q ss_pred cCcc
Q psy3721 183 TSRV 186 (207)
Q Consensus 183 ~~~~ 186 (207)
+.+.
T Consensus 88 ~s~s 91 (221)
T KOG4206|consen 88 KSDS 91 (221)
T ss_pred cCcc
Confidence 8663
No 102
>KOG0112|consensus
Probab=99.10 E-value=8.5e-11 Score=104.92 Aligned_cols=153 Identities=24% Similarity=0.437 Sum_probs=134.1
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEEC-------CEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK-------NYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~-------~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
....+.+||++|++..+++.+|+..|..+|.+.+|.+.. -||||.|.+...+-.|...+.+..+....+++..
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 345678999999999999999999999999999888872 4899999999999999989999988777777766
Q ss_pred cccCCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEecC--EEEEEEcc-HhHHHHHHHhCCceeCC--eeEE
Q psy3721 104 ATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--YGFVHIDS-PDINKCIKELNGMMVDG--KPMK 178 (207)
Q Consensus 104 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~--~afv~f~~-e~a~~A~~~l~g~~~~g--~~i~ 178 (207)
... .......+++++|+..+....|...|..||.|..|.+.+| |++|.|.+ ..++.|+..|-|..++| +.++
T Consensus 448 G~~---kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 448 GQP---KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccc---ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 654 3345678999999999999999999999999999999865 99999999 99999999999999977 6788
Q ss_pred EEeccCcc
Q psy3721 179 VQISTSRV 186 (207)
Q Consensus 179 v~~~~~~~ 186 (207)
|.|+.+..
T Consensus 525 vdla~~~~ 532 (975)
T KOG0112|consen 525 VDLASPPG 532 (975)
T ss_pred cccccCCC
Confidence 88887653
No 103
>KOG0108|consensus
Probab=99.09 E-value=1.6e-10 Score=98.30 Aligned_cols=73 Identities=25% Similarity=0.560 Sum_probs=69.7
Q ss_pred ceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
..+||||+|++.++++|..+|+..|.|.+++++ +||||++|.+ ++|.+|+..|||..+.|++|+|.|+.-.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999999999997 8899999999 9999999999999999999999999866
Q ss_pred cC
Q psy3721 186 VR 187 (207)
Q Consensus 186 ~~ 187 (207)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 104
>KOG0131|consensus
Probab=99.09 E-value=1.6e-10 Score=85.80 Aligned_cols=72 Identities=31% Similarity=0.564 Sum_probs=68.0
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
....+|||+||+..++++-|+++|-+.|.|.++.++ +||||++|.+ |+|.-|++-||...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 345799999999999999999999999999999997 6899999999 9999999999999999999999998
Q ss_pred c
Q psy3721 183 T 183 (207)
Q Consensus 183 ~ 183 (207)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 8
No 105
>KOG0126|consensus
Probab=99.08 E-value=1.9e-11 Score=90.66 Aligned_cols=74 Identities=20% Similarity=0.440 Sum_probs=68.7
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
.++-=|||+|||+..||.||.-.|++||++.+|.+. +||||+.|++..+...|+.-|+|..+.|+.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 345679999999999999999999999999999998 589999999999999999999999999999999876
Q ss_pred cc
Q psy3721 105 TS 106 (207)
Q Consensus 105 ~~ 106 (207)
..
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 54
No 106
>KOG0126|consensus
Probab=99.07 E-value=2e-11 Score=90.58 Aligned_cols=75 Identities=16% Similarity=0.465 Sum_probs=68.9
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
....+..|||||||+.+|+.+|--+|+.||.|.+|-++ +||||+.|++ .+..-|+..|||..+.||.|+|.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 44557899999999999999999999999999999998 6899999999 99999999999999999999998
Q ss_pred eccC
Q psy3721 181 ISTS 184 (207)
Q Consensus 181 ~~~~ 184 (207)
....
T Consensus 111 Hv~~ 114 (219)
T KOG0126|consen 111 HVSN 114 (219)
T ss_pred eccc
Confidence 7653
No 107
>KOG4211|consensus
Probab=99.07 E-value=3.3e-09 Score=89.51 Aligned_cols=152 Identities=12% Similarity=0.146 Sum_probs=116.7
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEE-EEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE-CDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~-i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
.....|-+.+||..||++||.+||+..-.+.. +.+. .+-|||+|+++++|++|+. .|...++.+.|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 34568999999999999999999998765554 3333 4689999999999999995 4778888888887665
Q ss_pred ccCCC---------------------------------------------------------------------------
Q psy3721 105 TSRKG--------------------------------------------------------------------------- 109 (207)
Q Consensus 105 ~~~~~--------------------------------------------------------------------------- 109 (207)
.....
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 22100
Q ss_pred CC-----------------CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHH
Q psy3721 110 PN-----------------TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCI 164 (207)
Q Consensus 110 ~~-----------------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~ 164 (207)
.. ..+..++..+||++.++.++..+|+..-.+ .+.+. .+.|.|+|.| ++|..|+
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhh
Confidence 00 012568889999999999999999887554 44443 5789999999 9999999
Q ss_pred HHhCCceeCCeeEEEEeccCccC
Q psy3721 165 KELNGMMVDGKPMKVQISTSRVR 187 (207)
Q Consensus 165 ~~l~g~~~~g~~i~v~~~~~~~~ 187 (207)
.+ ++..+..+.|.+........
T Consensus 339 sk-d~anm~hrYVElFln~~~ga 360 (510)
T KOG4211|consen 339 GK-DGANMGHRYVELFLNGAPGA 360 (510)
T ss_pred cc-CCcccCcceeeecccCCccc
Confidence 88 88888888888777654333
No 108
>KOG0132|consensus
Probab=98.99 E-value=1e-09 Score=96.79 Aligned_cols=77 Identities=18% Similarity=0.426 Sum_probs=72.1
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccCCC
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~ 189 (207)
.++||||+.|+..+++.+|..+|+.||.|.+|.+. +++|||.+.. .+|.+|+.+|+...+.++.|++.|+...+.+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 35899999999999999999999999999999997 8999999999 99999999999999999999999998876544
No 109
>KOG1365|consensus
Probab=98.96 E-value=2.1e-09 Score=88.20 Aligned_cols=160 Identities=12% Similarity=0.176 Sum_probs=118.5
Q ss_pred cccCCCCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceE----EEEEE-------CCEEEEEeCChHHHHHHHHHhcC
Q psy3721 23 SCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVV----ECDVV-------KNYGFVHMENDEEGRTAIKELNG 91 (207)
Q Consensus 23 ~~~~~~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~----~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~ 91 (207)
++..++-........|-..+||.++++.++.++|.....|. .+-.. .|-|||.|..+++|+.|+.+ |.
T Consensus 149 s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hr 227 (508)
T KOG1365|consen 149 SNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HR 227 (508)
T ss_pred cccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HH
Confidence 33344444445566788999999999999999997543332 22222 47899999999999999954 77
Q ss_pred CeeCCeeeEEEEcccCC------------------------------CCCCCCceeeecCCCCCCChhHHHHhcccCCc-
Q psy3721 92 QIVNEKPLKIEAATSRK------------------------------GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT- 140 (207)
Q Consensus 92 ~~~~g~~i~v~~~~~~~------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~- 140 (207)
..++.+.|.+..+.... .+......|-+.+||+..+-++|-++|..|..
T Consensus 228 q~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~ 307 (508)
T KOG1365|consen 228 QNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATD 307 (508)
T ss_pred HHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhh
Confidence 77777766554432210 01123578999999999999999999998874
Q ss_pred EEE--EEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 141 VVE--CDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 141 i~~--~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
|.. +.+. .|.|||+|.+ |+|..|+..-+++...++.|.|.-+.
T Consensus 308 i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 308 IRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred cccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 333 2232 5689999999 99999999989888889999988776
No 110
>KOG0128|consensus
Probab=98.96 E-value=8.9e-11 Score=104.36 Aligned_cols=141 Identities=18% Similarity=0.267 Sum_probs=117.3
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccC
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 107 (207)
.++||.||++.+.+.+|...|..+|.+..+.+. +|+||++|.+++.+..|+. +....+.|
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~-f~d~~~~g----------- 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA-FRDSCFFG----------- 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh-hhhhhhhh-----------
Confidence 578999999999999999999999887665553 7999999999999999995 44444444
Q ss_pred CCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEE
Q psy3721 108 KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179 (207)
Q Consensus 108 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v 179 (207)
...++|.|.|++.|.++++.++..+|.+.+.+++ +|.+++.|.+ .++.++....++..+.-..+.+
T Consensus 736 ------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v 809 (881)
T KOG0128|consen 736 ------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEV 809 (881)
T ss_pred ------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccc
Confidence 2468999999999999999999999999998776 6789999999 9999999998988888888888
Q ss_pred EeccCccCCCCCCCc
Q psy3721 180 QISTSRVRQRPGVDE 194 (207)
Q Consensus 180 ~~~~~~~~~~~~~~~ 194 (207)
..+.|.+++..+.+.
T Consensus 810 ~vsnp~~~K~k~~~~ 824 (881)
T KOG0128|consen 810 QVSNPERDKKKGEDK 824 (881)
T ss_pred cccCCccccccccCC
Confidence 886664444433333
No 111
>KOG4454|consensus
Probab=98.96 E-value=3.3e-10 Score=86.46 Aligned_cols=140 Identities=19% Similarity=0.275 Sum_probs=112.0
Q ss_pred CCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEEC------CEEEEEeCChHHHHHHHHHhcCCeeCCeeeEE
Q psy3721 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK------NYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101 (207)
Q Consensus 28 ~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~------~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 101 (207)
+.......++|||.|+-..++|+-|.++|-..|+|.++.|.. .||||.|+++-....|+..++|..+.+.++.+
T Consensus 2 gaaaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 2 GAAAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCCCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhc
Confidence 344456778999999999999999999999999999999982 49999999999999999999999999999988
Q ss_pred EEcccCCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeC
Q psy3721 102 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVD 173 (207)
Q Consensus 102 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~ 173 (207)
.+.....-. -|...++++-+...|+..|.+..++.. +.++++.+-- .+.-.++...++....
T Consensus 82 ~~r~G~sha----------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 82 TLRCGNSHA----------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred ccccCCCcc----------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 754422111 166778888899999999998888886 4588888776 6666666666666544
Q ss_pred CeeE
Q psy3721 174 GKPM 177 (207)
Q Consensus 174 g~~i 177 (207)
-+++
T Consensus 152 ~~~~ 155 (267)
T KOG4454|consen 152 QKKV 155 (267)
T ss_pred CCCc
Confidence 4443
No 112
>KOG0153|consensus
Probab=98.94 E-value=4.3e-09 Score=85.32 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=68.3
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHh-cCCeeCCeeeEEEEccc
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKEL-NGQIVNEKPLKIEAATS 106 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~~~~ 106 (207)
.+...-++|||++|-..++|.+|++.|-.||+|+.+.+. +++|||+|.+.+.|+.|..+. +...+.|.+|++.|+.+
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 344566899999999999999999999999999999887 679999999999999988654 44567999999999998
Q ss_pred C
Q psy3721 107 R 107 (207)
Q Consensus 107 ~ 107 (207)
.
T Consensus 303 ~ 303 (377)
T KOG0153|consen 303 K 303 (377)
T ss_pred c
Confidence 3
No 113
>smart00361 RRM_1 RNA recognition motif.
Probab=98.94 E-value=3.7e-09 Score=68.12 Aligned_cols=52 Identities=25% Similarity=0.478 Sum_probs=46.1
Q ss_pred hhHHHHhcc----cCCcEEEEE-Ee----------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEE
Q psy3721 128 APEVRELFV----PYGTVVECD-IV----------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179 (207)
Q Consensus 128 ~~~l~~~f~----~~g~i~~~~-~~----------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v 179 (207)
+++|+++|+ .||.|.++. +. +|+|||+|.+ ++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999884 32 6799999999 9999999999999999999976
No 114
>KOG4660|consensus
Probab=98.90 E-value=8.5e-10 Score=94.25 Aligned_cols=157 Identities=16% Similarity=0.207 Sum_probs=114.7
Q ss_pred CCCCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE---CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 26 ~~~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~---~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
.-|..+..++.+|+|-|||..+++++|..+|+.||+|+.+..- ++.+||+|.|..+|+.|+++|++..+.|++|+..
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~ 145 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRP 145 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCC
Confidence 4566667788999999999999999999999999999987664 7899999999999999999999999999998822
Q ss_pred EcccCCC-----------------CCC----CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe---cCEEEEEEcc-
Q psy3721 103 AATSRKG-----------------PNT----PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS- 157 (207)
Q Consensus 103 ~~~~~~~-----------------~~~----~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~---~~~afv~f~~- 157 (207)
....... ... +...+ ++.|++..+..-++..+..+|.+.. +.. +.--++.|.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~-~g~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~ 223 (549)
T KOG4660|consen 146 GGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQL-FGMLSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADN 223 (549)
T ss_pred CcccccchhcccchhhhhccchhhcCCCCCCcCCcc-eeeeccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccc
Confidence 1111110 000 11223 2338888777777777888886666 332 3345666777
Q ss_pred HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 158 PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 158 e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
.++..+.... |..+.+......++.+.
T Consensus 224 ~s~a~~~~~~-G~~~s~~~~v~t~S~~~ 250 (549)
T KOG4660|consen 224 RSYAFSEPRG-GFLISNSSGVITFSGPG 250 (549)
T ss_pred cchhhcccCC-ceecCCCCceEEecCCC
Confidence 7775555544 77777777777777764
No 115
>KOG0146|consensus
Probab=98.89 E-value=3.1e-09 Score=83.55 Aligned_cols=90 Identities=27% Similarity=0.591 Sum_probs=76.3
Q ss_pred CeeeEEEEcccCCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHh
Q psy3721 96 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKEL 167 (207)
Q Consensus 96 g~~i~v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l 167 (207)
++.|.|+++.++.... ..++|||+=|.++-.|+|++.+|..||.+++|.+. ||++||+|.+ .+|+.|++.|
T Consensus 2 nrpiqvkpadsesrg~-~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aL 80 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGG-DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINAL 80 (371)
T ss_pred CCCccccccccccCCc-cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHh
Confidence 4667777777655432 46789999999999999999999999999999997 7799999999 9999999999
Q ss_pred CCce-eCC--eeEEEEeccCcc
Q psy3721 168 NGMM-VDG--KPMKVQISTSRV 186 (207)
Q Consensus 168 ~g~~-~~g--~~i~v~~~~~~~ 186 (207)
||.. +.| ..|.|+|+...+
T Consensus 81 HgSqTmpGASSSLVVK~ADTdk 102 (371)
T KOG0146|consen 81 HGSQTMPGASSSLVVKFADTDK 102 (371)
T ss_pred cccccCCCCccceEEEeccchH
Confidence 9988 444 678899997653
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=98.89 E-value=1e-08 Score=66.03 Aligned_cols=53 Identities=23% Similarity=0.418 Sum_probs=47.0
Q ss_pred HHHHHHHhh----cCCceEEEE-EE----------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEE
Q psy3721 49 VELIRPLFE----KYGKVVECD-VV----------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101 (207)
Q Consensus 49 ~~~l~~~f~----~~g~i~~i~-~~----------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 101 (207)
+++|+++|+ .||.|.++. +. +|||||+|.+.++|.+|++.|+|..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999998884 22 579999999999999999999999999999876
No 117
>KOG1457|consensus
Probab=98.87 E-value=1.9e-08 Score=77.27 Aligned_cols=78 Identities=18% Similarity=0.356 Sum_probs=67.0
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe---------cCEEEEEEcc-HhHHHHHHHhCCceeC---CeeE
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---------RNYGFVHIDS-PDINKCIKELNGMMVD---GKPM 177 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~---------~~~afv~f~~-e~a~~A~~~l~g~~~~---g~~i 177 (207)
....++|||.+||.++...+|+.+|..|-.-+.+.+. +.+||+.|.+ .+|..|++.|||..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3457899999999999999999999999766666665 3589999999 9999999999999984 5789
Q ss_pred EEEeccCccCC
Q psy3721 178 KVQISTSRVRQ 188 (207)
Q Consensus 178 ~v~~~~~~~~~ 188 (207)
++.++++..+.
T Consensus 111 hiElAKSNtK~ 121 (284)
T KOG1457|consen 111 HIELAKSNTKR 121 (284)
T ss_pred EeeehhcCccc
Confidence 99999877543
No 118
>KOG0415|consensus
Probab=98.85 E-value=5.4e-09 Score=85.06 Aligned_cols=74 Identities=24% Similarity=0.592 Sum_probs=68.5
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECC--------EEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~--------~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
.+...|||..|.|-+++++|.-+|++||.|.++.+.++ ||||+|.+.++++.|.-+|++..+.++.|.|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 34669999999999999999999999999999999853 8999999999999999999999999999999987
Q ss_pred cc
Q psy3721 105 TS 106 (207)
Q Consensus 105 ~~ 106 (207)
.+
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 54
No 119
>KOG2193|consensus
Probab=98.84 E-value=2e-10 Score=95.12 Aligned_cols=146 Identities=23% Similarity=0.374 Sum_probs=123.5
Q ss_pred cEEEcCCCCCCCHHHHHHHhhcCC--ceEEEEEECCEEEEEeCChHHHHHHHHHhcCC-eeCCeeeEEEEcccCCCCCCC
Q psy3721 37 KIFIGNVNPGTSVELIRPLFEKYG--KVVECDVVKNYGFVHMENDEEGRTAIKELNGQ-IVNEKPLKIEAATSRKGPNTP 113 (207)
Q Consensus 37 ~l~V~~lp~~~t~~~l~~~f~~~g--~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~-~~~g~~i~v~~~~~~~~~~~~ 113 (207)
.+|++||.+..+.++|..+|...- --...-+..+|+||+..+..+|.+|++.+++. .+.|.++.+..+-++...
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr--- 79 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR--- 79 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH---
Confidence 689999999999999999998642 11233344799999999999999999999987 579999999887765432
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEEEecC-----EEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-----YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~-----~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
++.+-+.|+|....++.|..+...||.++.|....- ..-++|.+ +.+..|+.+|+|..+.+..+++.|....
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 567999999999999999999999999999877621 34467889 9999999999999999999999998744
No 120
>KOG0415|consensus
Probab=98.76 E-value=1.7e-08 Score=82.16 Aligned_cols=74 Identities=20% Similarity=0.572 Sum_probs=69.1
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEec--------CEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR--------NYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~--------~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
..+|-+.|||--|++-+++++|.-+|+.||.|..|.+.+ .||||+|.+ +++.+|.-+|++..|.++.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 456778999999999999999999999999999999984 399999999 99999999999999999999999
Q ss_pred ecc
Q psy3721 181 IST 183 (207)
Q Consensus 181 ~~~ 183 (207)
|+-
T Consensus 315 FSQ 317 (479)
T KOG0415|consen 315 FSQ 317 (479)
T ss_pred hhh
Confidence 875
No 121
>KOG0151|consensus
Probab=98.74 E-value=3.1e-08 Score=86.92 Aligned_cols=75 Identities=28% Similarity=0.538 Sum_probs=69.7
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-----------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEE
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-----------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 101 (207)
..++.|||+||++.+++..|..-|.+||++-.++++ +.+|||-|-+..+|+.|++.|+|..+.+.++++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 357899999999999999999999999999999987 469999999999999999999999999999999
Q ss_pred EEcccC
Q psy3721 102 EAATSR 107 (207)
Q Consensus 102 ~~~~~~ 107 (207)
.|+..-
T Consensus 252 gWgk~V 257 (877)
T KOG0151|consen 252 GWGKAV 257 (877)
T ss_pred cccccc
Confidence 999543
No 122
>KOG4661|consensus
Probab=98.71 E-value=3.3e-08 Score=85.00 Aligned_cols=73 Identities=33% Similarity=0.653 Sum_probs=68.4
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
.+..|||.+|...+...+|+.+|++||.|.-.+++ +.|+||++.+ ++|.+.|.+||.+.|+|+-|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 45789999999999999999999999999999998 6699999999 99999999999999999999999998
Q ss_pred Cc
Q psy3721 184 SR 185 (207)
Q Consensus 184 ~~ 185 (207)
-.
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 54
No 123
>KOG0106|consensus
Probab=98.71 E-value=1.6e-08 Score=78.20 Aligned_cols=71 Identities=24% Similarity=0.590 Sum_probs=68.0
Q ss_pred eeeecCCCCCCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCcc
Q psy3721 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186 (207)
Q Consensus 116 ~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 186 (207)
.+||++||+...+.+|..+|..||.+.++.+..+|+||+|.+ .+|..|+..|||..|.|..+.+.|++...
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 589999999999999999999999999999999999999999 99999999999999999999999999653
No 124
>KOG0226|consensus
Probab=98.64 E-value=2.1e-08 Score=78.25 Aligned_cols=151 Identities=21% Similarity=0.446 Sum_probs=113.5
Q ss_pred cccEEEcCCCCCCCHHH-H--HHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 35 TFKIFIGNVNPGTSVEL-I--RPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~-l--~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
....+++++-..+..+- | ...|+.+-.+...++. ++++|+.|.....-.++...-+++.++...++....
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 44555666555544443 2 4556666555554444 579999999998888888877788887777777666
Q ss_pred ccCCCCC-----CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCc
Q psy3721 105 TSRKGPN-----TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGM 170 (207)
Q Consensus 105 ~~~~~~~-----~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~ 170 (207)
....+++ .....||.+.|...++++.|-..|.+|-....-++. +||+||.|.+ .++.+|+.+|||.
T Consensus 176 tswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gk 255 (290)
T KOG0226|consen 176 TSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGK 255 (290)
T ss_pred cccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccc
Confidence 5554432 345789999999999999999999988655555444 7899999999 9999999999999
Q ss_pred eeCCeeEEEEeccCc
Q psy3721 171 MVDGKPMKVQISTSR 185 (207)
Q Consensus 171 ~~~g~~i~v~~~~~~ 185 (207)
+++.++|+++.+.-+
T Consensus 256 yVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 256 YVGSRPIKLRKSEWK 270 (290)
T ss_pred ccccchhHhhhhhHH
Confidence 999999988765543
No 125
>KOG4208|consensus
Probab=98.62 E-value=1.7e-07 Score=71.13 Aligned_cols=75 Identities=20% Similarity=0.335 Sum_probs=67.3
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcC-CceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKY-GKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~-g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
.....+|+..+|-.+.+.++..+|..+ |.+....+. +|||||+|++++.|+-|-+.||++.|.++.|.+..
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345688999999999999999999988 777888774 68999999999999999999999999999999998
Q ss_pred cccC
Q psy3721 104 ATSR 107 (207)
Q Consensus 104 ~~~~ 107 (207)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7765
No 126
>KOG4661|consensus
Probab=98.61 E-value=1.1e-07 Score=81.84 Aligned_cols=75 Identities=28% Similarity=0.492 Sum_probs=69.0
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
..+.|||.+|...+-..+|+++|+.||+|...+++ +=|+||++.+.++|.+++.-||...++|+.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 35789999999999999999999999999988887 3399999999999999999999999999999999987
Q ss_pred cCC
Q psy3721 106 SRK 108 (207)
Q Consensus 106 ~~~ 108 (207)
...
T Consensus 484 NEp 486 (940)
T KOG4661|consen 484 NEP 486 (940)
T ss_pred cCc
Confidence 654
No 127
>KOG4210|consensus
Probab=98.59 E-value=6.3e-08 Score=78.85 Aligned_cols=154 Identities=16% Similarity=0.300 Sum_probs=119.8
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
..++.|++++.....+.+...++..+|......+. ++++.+.|...+.+..++.........++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 57789999999999998888999998876544443 7899999999999999986544334444433322222
Q ss_pred cCC---------CCCCCCceee-ecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHH
Q psy3721 106 SRK---------GPNTPTTKVF-VGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKE 166 (207)
Q Consensus 106 ~~~---------~~~~~~~~l~-v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~ 166 (207)
... ....+..+++ +++++..++.++|+..|..+|.|..++++ +++|+++|.. ..+..++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 111 1122334455 99999999999999999999999999997 6799999999 999998888
Q ss_pred hCCceeCCeeEEEEeccCccCC
Q psy3721 167 LNGMMVDGKPMKVQISTSRVRQ 188 (207)
Q Consensus 167 l~g~~~~g~~i~v~~~~~~~~~ 188 (207)
+...+.++++.+.+..+.+..
T Consensus 247 -~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 247 -QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred -ccCcccCcccccccCCCCccc
Confidence 888899999999999887543
No 128
>KOG4208|consensus
Probab=98.56 E-value=2.9e-07 Score=69.94 Aligned_cols=76 Identities=16% Similarity=0.319 Sum_probs=68.6
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccC-CcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPY-GTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~-g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v 179 (207)
.......+++..+|..+-+..+..+|.+| |.+.++++. +|||||+|++ +.|.-|...||+-.++++-|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34456789999999999999999999999 678888884 7899999999 9999999999999999999999
Q ss_pred EeccCc
Q psy3721 180 QISTSR 185 (207)
Q Consensus 180 ~~~~~~ 185 (207)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 999876
No 129
>KOG1365|consensus
Probab=98.56 E-value=1.9e-07 Score=76.86 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=111.4
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
++.+.+-..++|+..++.++..+|+...-....... .+.+.|.|.++|.-+.|++. |+..++++.|.|..+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeecc
Confidence 356678899999999999999999865332211111 57899999999999999964 888889999999887
Q ss_pred ccCCC---------------CCCCCceeeecCCCCCCChhHHHHhcc---cCC-cEEEEEEe-------cCEEEEEEcc-
Q psy3721 105 TSRKG---------------PNTPTTKVFVGNLSDNTRAPEVRELFV---PYG-TVVECDIV-------RNYGFVHIDS- 157 (207)
Q Consensus 105 ~~~~~---------------~~~~~~~l~v~nl~~~~t~~~l~~~f~---~~g-~i~~~~~~-------~~~afv~f~~- 157 (207)
..+.- .....-.|-+.+||+++++.++.++|. ..+ ..+.+.++ .|-|||.|..
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 65531 111234677889999999999999995 222 34444443 4689999999
Q ss_pred HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 158 PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 158 e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
++|+.|+.+ |...++-|.|.+..++
T Consensus 217 e~aq~aL~k-hrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 217 EDAQFALRK-HRQNIGQRYIELFRST 241 (508)
T ss_pred HHHHHHHHH-HHHHHhHHHHHHHHHh
Confidence 999999988 6677777777665554
No 130
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.55 E-value=3.7e-07 Score=59.70 Aligned_cols=68 Identities=21% Similarity=0.306 Sum_probs=48.2
Q ss_pred ceeeecCCCCCCChhH----HHHhcccCC-cEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccC
Q psy3721 115 TKVFVGNLSDNTRAPE----VRELFVPYG-TVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTS 184 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~----l~~~f~~~g-~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~ 184 (207)
..|+|.|||.+.+... |+.++..+| .|..+ ..+-|.|.|.+ +.|.+|.+.|+|..+.|+.|.|+|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 4699999999988754 557777887 56665 47899999999 999999999999999999999999854
No 131
>KOG0533|consensus
Probab=98.51 E-value=5.4e-07 Score=71.23 Aligned_cols=75 Identities=23% Similarity=0.387 Sum_probs=66.9
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
...++|+|.|||+.++++||+++|..||.+..+.+. .|.|-|.|...++|..|++.+++..+.|+.+++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 345789999999999999999999999988777776 4789999999999999999999999999998888766
Q ss_pred cC
Q psy3721 106 SR 107 (207)
Q Consensus 106 ~~ 107 (207)
+.
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 44
No 132
>KOG0151|consensus
Probab=98.49 E-value=2.7e-07 Score=81.16 Aligned_cols=72 Identities=31% Similarity=0.506 Sum_probs=68.0
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-----------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEE
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-----------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v 179 (207)
+....|||+||++.+++..|-..|..||+|..++++ +.+|||-|-+ .+|.+|+..|+|..+++..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 445789999999999999999999999999999998 5699999999 9999999999999999999999
Q ss_pred Eecc
Q psy3721 180 QIST 183 (207)
Q Consensus 180 ~~~~ 183 (207)
.|++
T Consensus 252 gWgk 255 (877)
T KOG0151|consen 252 GWGK 255 (877)
T ss_pred cccc
Confidence 9996
No 133
>KOG0533|consensus
Probab=98.44 E-value=6.7e-07 Score=70.73 Aligned_cols=72 Identities=31% Similarity=0.530 Sum_probs=65.7
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
...|+|.|||+.+++++|+++|..||.++.+.++ .|.|-|.|.. ++|.+|+..+||..++|+.+++....+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 4689999999999999999999999988888887 5789999999 9999999999999999999998877644
No 134
>KOG4205|consensus
Probab=98.43 E-value=4.6e-07 Score=74.29 Aligned_cols=134 Identities=22% Similarity=0.323 Sum_probs=97.3
Q ss_pred cccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
+..+||++||.+++++++++.|..||.|..+.++ ++|+||+|.+++.+++++ ......+.++.+.|..+.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeeccc
Confidence 5589999999999999999999999988777766 789999999999999988 4577889999999999988
Q ss_pred CCCCCCCC----ceeeecCCCCCCChhHHHHhcccCCcEEEEEE-------------ecCEEEEEEcc-HhHHHHHHHhC
Q psy3721 107 RKGPNTPT----TKVFVGNLSDNTRAPEVRELFVPYGTVVECDI-------------VRNYGFVHIDS-PDINKCIKELN 168 (207)
Q Consensus 107 ~~~~~~~~----~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~-------------~~~~afv~f~~-e~a~~A~~~l~ 168 (207)
+..-.... ...+..++....+.-.|...|..|+......- ..+.+|..|.. .....+...++
T Consensus 176 k~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~ 255 (311)
T KOG4205|consen 176 KEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYGPLFNGGSGYPEFGNSGLGFGYGNKLN 255 (311)
T ss_pred hhhccccccccccccccccccccccccccchhccccCccccccccccccccccccccCCCccccccCccccccccccccC
Confidence 76533221 12222244444444555666666654431110 14678888887 77777777766
Q ss_pred C
Q psy3721 169 G 169 (207)
Q Consensus 169 g 169 (207)
+
T Consensus 256 ~ 256 (311)
T KOG4205|consen 256 R 256 (311)
T ss_pred C
Confidence 6
No 135
>KOG4660|consensus
Probab=98.40 E-value=1.8e-07 Score=80.21 Aligned_cols=68 Identities=25% Similarity=0.360 Sum_probs=63.4
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe---cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEE
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMK 178 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~---~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~ 178 (207)
..+..+|+|-|||.+++.++|+.+|+.||+|+.++.- ++.+||+|.+ .+|.+|++.|++..+.|+.++
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4467899999999999999999999999999997764 7899999999 999999999999999999998
No 136
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.36 E-value=3.4e-06 Score=57.52 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=56.8
Q ss_pred cccEEEcCCCCCCCHHHHHHHhhcC--CceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeC----CeeeE
Q psy3721 35 TFKIFIGNVNPGTSVELIRPLFEKY--GKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVN----EKPLK 100 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~l~~~f~~~--g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~----g~~i~ 100 (207)
.+||+|+|||...|.++|.+++.+. |...-+.++ .|||||.|.+++.|.+..+.++|.... .+.+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 3799999999999999999998753 333333333 589999999999999999999998763 45566
Q ss_pred EEEcccC
Q psy3721 101 IEAATSR 107 (207)
Q Consensus 101 v~~~~~~ 107 (207)
+.++.-.
T Consensus 81 i~yAriQ 87 (97)
T PF04059_consen 81 ISYARIQ 87 (97)
T ss_pred EehhHhh
Confidence 6666543
No 137
>KOG0116|consensus
Probab=98.33 E-value=1.6e-06 Score=73.77 Aligned_cols=72 Identities=22% Similarity=0.489 Sum_probs=63.3
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccC
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTS 184 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~ 184 (207)
...|||.|||.++++++|+++|..||.|+...+. .+||||+|.+ ++++.|+.. +-..++++++.|.-.++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 3569999999999999999999999999987775 2699999999 999999988 57779999999988876
Q ss_pred cc
Q psy3721 185 RV 186 (207)
Q Consensus 185 ~~ 186 (207)
..
T Consensus 367 ~~ 368 (419)
T KOG0116|consen 367 GF 368 (419)
T ss_pred cc
Confidence 43
No 138
>KOG0116|consensus
Probab=98.30 E-value=1.4e-06 Score=74.19 Aligned_cols=71 Identities=23% Similarity=0.469 Sum_probs=61.7
Q ss_pred cccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--C------CEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--K------NYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~------~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
..+|||+|||.++++++|+++|..||.|....+. . .||||+|++...++.++.. +...++++++.|+--.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 4559999999999999999999999999776654 2 6999999999999999965 57888999999986654
No 139
>KOG4209|consensus
Probab=98.27 E-value=2.2e-06 Score=67.75 Aligned_cols=75 Identities=17% Similarity=0.368 Sum_probs=67.4
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
.......+|++|+++.++.+++...|+.||.+..+.+. ++++||+|.+ +.+..|+. |||..+.|+.+.+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 34456789999999999999999999999999877775 6799999999 99999999 99999999999999
Q ss_pred eccCc
Q psy3721 181 ISTSR 185 (207)
Q Consensus 181 ~~~~~ 185 (207)
+.+..
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 98865
No 140
>KOG4307|consensus
Probab=98.23 E-value=4e-06 Score=73.92 Aligned_cols=152 Identities=11% Similarity=0.048 Sum_probs=118.4
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
..+++-+-+.+++.+..+.|++++|.... +....+. .|-++|+|....++++|++. +...+-++.+.+..
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P 385 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGP 385 (944)
T ss_pred cchhheeeecccccccccchhhhhcCccc-ccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecC
Confidence 34677888899999999999999997532 3222222 57899999999999999854 66666677777766
Q ss_pred cccCCC--------------------------------------CCCCCceeeecCCCCCCChhHHHHhcccCCcEEE-E
Q psy3721 104 ATSRKG--------------------------------------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE-C 144 (207)
Q Consensus 104 ~~~~~~--------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~-~ 144 (207)
...... +...+..|||..||..++..++.+.|...-.|++ |
T Consensus 386 ~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I 465 (944)
T KOG4307|consen 386 PGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFI 465 (944)
T ss_pred CCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhee
Confidence 543321 1124678999999999999999999988777777 5
Q ss_pred EEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 145 DIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 145 ~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
.+- ++.|||.|.. +++..|...-+.++++.+.|+|.-....
T Consensus 466 ~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 466 ELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred EeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 553 5689999999 9999999988999999999998776543
No 141
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.22 E-value=3.5e-06 Score=58.54 Aligned_cols=67 Identities=21% Similarity=0.450 Sum_probs=44.3
Q ss_pred ceeeecCCCCCCChhHHHHhcccCCcEEEEEEecC--EEEEEEcc-HhHHHHHHHhCCc-----eeCCeeEEEEe
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--YGFVHIDS-PDINKCIKELNGM-----MVDGKPMKVQI 181 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~--~afv~f~~-e~a~~A~~~l~g~-----~~~g~~i~v~~ 181 (207)
..|+|.+++..++.++|++.|+.||.|.+|.+.+| .|+|+|.+ ++|+.|+..+... .+.+..+++..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 56889999999999999999999999999999976 89999999 9999998775544 35666655544
No 142
>KOG4676|consensus
Probab=98.18 E-value=8.2e-07 Score=73.38 Aligned_cols=136 Identities=16% Similarity=0.207 Sum_probs=108.0
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-----------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-----------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
..|-|.||.+.+|.+.++.+|.-+|+|..+.++ ...|||.|.+...+..|- .|....|-++.|.|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 388999999999999999999999999988886 247999999999988776 56777777888888776
Q ss_pred ccCCCCC-------------------------------------------------------CCCceeeecCCCCCCChh
Q psy3721 105 TSRKGPN-------------------------------------------------------TPTTKVFVGNLSDNTRAP 129 (207)
Q Consensus 105 ~~~~~~~-------------------------------------------------------~~~~~l~v~nl~~~~t~~ 129 (207)
.....+. ....+++|.+|+......
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 5432100 012578999999999999
Q ss_pred HHHHhcccCCcEEEEEEe----cCEEEEEEcc-HhHHHHHHHhCCceeC
Q psy3721 130 EVRELFVPYGTVVECDIV----RNYGFVHIDS-PDINKCIKELNGMMVD 173 (207)
Q Consensus 130 ~l~~~f~~~g~i~~~~~~----~~~afv~f~~-e~a~~A~~~l~g~~~~ 173 (207)
++.+.|..+|.|.+..+. ..+|.+.|.. .....|+.. +|..+.
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 999999999998887765 4478899988 666666655 676655
No 143
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.17 E-value=1.8e-05 Score=51.89 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=48.5
Q ss_pred ccEEEcCCCCCCCHHHHHH----HhhcCC-ceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccC
Q psy3721 36 FKIFIGNVNPGTSVELIRP----LFEKYG-KVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~----~f~~~g-~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 107 (207)
+.|+|.|||.+.+...++. ++.-|| .|..+ ..+-|+|.|.+++.|++|.+.|+|-.+.|++|.|.+....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 4689999999888777555 555675 56555 5889999999999999999999999999999999987543
No 144
>KOG4209|consensus
Probab=98.16 E-value=3.5e-06 Score=66.60 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=68.0
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
...+...+||+|+...+|.+++...|+.||.+..+.+. ++|+||+|.+.+.++++++ |++..+.|..+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 34567899999999999999999999999999877776 6799999999999999997 99999999999998
Q ss_pred EcccC
Q psy3721 103 AATSR 107 (207)
Q Consensus 103 ~~~~~ 107 (207)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87644
No 145
>KOG1548|consensus
Probab=98.08 E-value=1.3e-05 Score=65.54 Aligned_cols=72 Identities=18% Similarity=0.286 Sum_probs=63.8
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEE--------EEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeE
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVE--------CDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPM 177 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~--------~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i 177 (207)
+..|||+|||.++|.+++.++|++||.|.+ |++- +|-|.|.|-- ++..-|+..|++..+.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 456999999999999999999999997765 3332 7789999999 99999999999999999999
Q ss_pred EEEeccCc
Q psy3721 178 KVQISTSR 185 (207)
Q Consensus 178 ~v~~~~~~ 185 (207)
+|..|+-.
T Consensus 214 rVerAkfq 221 (382)
T KOG1548|consen 214 RVERAKFQ 221 (382)
T ss_pred EEehhhhh
Confidence 99999844
No 146
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.99 E-value=3.6e-05 Score=62.79 Aligned_cols=72 Identities=22% Similarity=0.489 Sum_probs=61.7
Q ss_pred CceeeecCCCCCCChhH----H--HHhcccCCcEEEEEEecC---------E--EEEEEcc-HhHHHHHHHhCCceeCCe
Q psy3721 114 TTKVFVGNLSDNTRAPE----V--RELFVPYGTVVECDIVRN---------Y--GFVHIDS-PDINKCIKELNGMMVDGK 175 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~----l--~~~f~~~g~i~~~~~~~~---------~--afv~f~~-e~a~~A~~~l~g~~~~g~ 175 (207)
.+-+||-+||..+..++ | .++|.+||.|..|.+.+. . .+|+|.+ ++|++++...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35789999999877766 2 489999999999999732 2 4999999 999999999999999999
Q ss_pred eEEEEeccCc
Q psy3721 176 PMKVQISTSR 185 (207)
Q Consensus 176 ~i~v~~~~~~ 185 (207)
.|+..|...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999998744
No 147
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.88 E-value=5.4e-05 Score=52.60 Aligned_cols=67 Identities=22% Similarity=0.398 Sum_probs=43.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECC--EEEEEeCChHHHHHHHHHhcCC-----eeCCeeeEEE
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--YGFVHMENDEEGRTAIKELNGQ-----IVNEKPLKIE 102 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~--~~fV~f~~~~~a~~a~~~l~~~-----~~~g~~i~v~ 102 (207)
+.|.+.+++..++-++|++.|+.||.|.-|.+.+| -|+|-|.+++.|+.|+..+... .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 56889999999999999999999999999998876 7999999999999999866544 3445444443
No 148
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.82 E-value=0.00016 Score=49.28 Aligned_cols=72 Identities=17% Similarity=0.186 Sum_probs=57.7
Q ss_pred ceeeecCCCCCCChhHHHHhcccC--CcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeC----CeeEEE
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPY--GTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVD----GKPMKV 179 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~--g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~----g~~i~v 179 (207)
.+|-+.|+|...|.++|.+++... |....+-++ .|||||.|.+ +.|.+-...++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 578999999999999999888433 444444444 6899999999 9999999999999975 456778
Q ss_pred EeccCcc
Q psy3721 180 QISTSRV 186 (207)
Q Consensus 180 ~~~~~~~ 186 (207)
.||+-.+
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8887543
No 149
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.80 E-value=5e-05 Score=45.97 Aligned_cols=50 Identities=18% Similarity=0.405 Sum_probs=42.9
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHH
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAI 86 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~ 86 (207)
+.|-|.+.+++..+..| ..|..||+|.++.+. ..+.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 56889999988776555 588899999999998 789999999999999885
No 150
>KOG4454|consensus
Probab=97.78 E-value=1.1e-05 Score=61.99 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=65.8
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
...+|||+|+...++++-|.++|-..|.|..+.++ ..||||.|.+ -...-|++.+||..+.+..+.+++-...
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 45799999999999999999999999999999998 2399999999 8999999999999999999988876543
No 151
>KOG0226|consensus
Probab=97.68 E-value=4.2e-05 Score=60.15 Aligned_cols=74 Identities=26% Similarity=0.569 Sum_probs=63.0
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
....+||.+.|...++++.|-..|..|-.-...++. +||+||.|.++.++..|+++++|..++.+.|++..+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 346799999999999999999999988655444443 689999999999999999999999999999988765
Q ss_pred cc
Q psy3721 105 TS 106 (207)
Q Consensus 105 ~~ 106 (207)
.-
T Consensus 268 ~w 269 (290)
T KOG0226|consen 268 EW 269 (290)
T ss_pred hH
Confidence 43
No 152
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.57 E-value=0.00019 Score=58.64 Aligned_cols=98 Identities=16% Similarity=0.306 Sum_probs=74.5
Q ss_pred cccEEEcCCCCCCCHHHH------HHHhhcCCceEEEEEEC---------CE--EEEEeCChHHHHHHHHHhcCCeeCCe
Q psy3721 35 TFKIFIGNVNPGTSVELI------RPLFEKYGKVVECDVVK---------NY--GFVHMENDEEGRTAIKELNGQIVNEK 97 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~l------~~~f~~~g~i~~i~~~~---------~~--~fV~f~~~~~a~~a~~~l~~~~~~g~ 97 (207)
..-+||-+||+.+-.+++ .++|..||.|.+|.+.+ +. .||+|.+.|+|.+++...+|..+.|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 446899999998776662 35899999999998873 22 39999999999999999999999999
Q ss_pred eeEEEEcccC-------CCCCCCCceeeecCCCC---CCChhHHH
Q psy3721 98 PLKIEAATSR-------KGPNTPTTKVFVGNLSD---NTRAPEVR 132 (207)
Q Consensus 98 ~i~v~~~~~~-------~~~~~~~~~l~v~nl~~---~~t~~~l~ 132 (207)
.|+..+...+ ...=+....+|+..-.+ ..+.++|.
T Consensus 194 ~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~ 238 (480)
T COG5175 194 VLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELC 238 (480)
T ss_pred eEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHh
Confidence 9999988764 12223455677765443 35556654
No 153
>KOG3152|consensus
Probab=97.53 E-value=6.4e-05 Score=59.13 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=58.5
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEEC------------C--------EEEEEeCChHHHHHHHHHhcCCe
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK------------N--------YGFVHMENDEEGRTAIKELNGQI 93 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~------------~--------~~fV~f~~~~~a~~a~~~l~~~~ 93 (207)
.+-.||+++|||.+...-|+++++.||.|-+|.+.. | -|+|+|.+...|......||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 456899999999999999999999999999998861 1 38999999999999999999999
Q ss_pred eCCee
Q psy3721 94 VNEKP 98 (207)
Q Consensus 94 ~~g~~ 98 (207)
++|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98876
No 154
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.43 E-value=0.00026 Score=42.82 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=41.1
Q ss_pred ceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHH
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCI 164 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~ 164 (207)
..|-|.+.+....+..|+ .|..||.|.++.+. ....+|+|.+ .+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 467788888777665555 88899999999998 7799999999 9999884
No 155
>KOG3152|consensus
Probab=97.43 E-value=7.5e-05 Score=58.75 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=57.7
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEec------------C--------EEEEEEcc-HhHHHHHHHhCCce
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR------------N--------YGFVHIDS-PDINKCIKELNGMM 171 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~------------~--------~afv~f~~-e~a~~A~~~l~g~~ 171 (207)
....||+++||+.+....|+++|+.||.|-++.+-+ + .|.|+|.+ ..|.+....|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 357899999999999999999999999999999861 1 48899999 99999999999999
Q ss_pred eCCee
Q psy3721 172 VDGKP 176 (207)
Q Consensus 172 ~~g~~ 176 (207)
++|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99975
No 156
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.37 E-value=0.0015 Score=42.84 Aligned_cols=59 Identities=14% Similarity=0.239 Sum_probs=46.1
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcC
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG 91 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~ 91 (207)
+......+|+ .|+.+...||.++|+.||.|.=-++.-.-|||.+.+.+.|..++..+..
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHHhcc
Confidence 3344566676 9999999999999999999987777788999999999999999987754
No 157
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.37 E-value=0.0015 Score=47.65 Aligned_cols=57 Identities=23% Similarity=0.414 Sum_probs=45.8
Q ss_pred hHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCcc
Q psy3721 129 PEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186 (207)
Q Consensus 129 ~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 186 (207)
.+|-+.|..||.+.-+++..+.-+|+|.+ +.|.+|+.. +|..++|+.|+|+...+.=
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~~mwVTF~dg~sALaals~-dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGDTMWVTFRDGQSALAALSL-DGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETTCEEEEESSCHHHHHHHHG-CCSEETTEEEEEEE-----
T ss_pred HHHHHHHHhCCceEEEEEeCCeEEEEECccHHHHHHHcc-CCcEECCEEEEEEeCCccH
Confidence 46778889999999999999999999999 888877665 9999999999999988763
No 158
>KOG4307|consensus
Probab=97.26 E-value=0.00082 Score=59.84 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=62.3
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCce-EEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEE
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV-VECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i-~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 101 (207)
.+....+.|-+.|+|.+++.+||.+||..|-.+ .+|.+. .|-|-|-|++.+.|..|+..|+++.+.++.+++
T Consensus 862 ~~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l 941 (944)
T KOG4307|consen 862 IKSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSL 941 (944)
T ss_pred cCCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEE
Confidence 344455688999999999999999999999765 344444 578999999999999999999999999999887
Q ss_pred EE
Q psy3721 102 EA 103 (207)
Q Consensus 102 ~~ 103 (207)
..
T Consensus 942 ~i 943 (944)
T KOG4307|consen 942 RI 943 (944)
T ss_pred Ee
Confidence 53
No 159
>KOG1855|consensus
Probab=97.24 E-value=0.00049 Score=57.95 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=54.8
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe---------------------cCEEEEEEcc-HhHHHHHHHh
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---------------------RNYGFVHIDS-PDINKCIKEL 167 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~---------------------~~~afv~f~~-e~a~~A~~~l 167 (207)
+..++.+|.+-|||.+-.-+.|.++|..+|.|+.|++. +-+|+|+|.. +.|.+|...|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 34578999999999998889999999999999999996 1279999999 9999999888
Q ss_pred CCcee
Q psy3721 168 NGMMV 172 (207)
Q Consensus 168 ~g~~~ 172 (207)
+....
T Consensus 307 ~~e~~ 311 (484)
T KOG1855|consen 307 NPEQN 311 (484)
T ss_pred chhhh
Confidence 65553
No 160
>KOG0128|consensus
Probab=97.15 E-value=4.5e-05 Score=68.84 Aligned_cols=138 Identities=19% Similarity=0.221 Sum_probs=108.7
Q ss_pred cccEEEcCCCCCCCHH-HHHHHhhcCCceEEEEEEC-C-------EEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 35 TFKIFIGNVNPGTSVE-LIRPLFEKYGKVVECDVVK-N-------YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~-~l~~~f~~~g~i~~i~~~~-~-------~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
....++.++.+..... ..+..|..+|.+.++.... | ++++.+..+..++.+. ...+..+.++.+.+..++
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCCCC
Confidence 4456677777775555 5677889999999998874 3 5789899998888887 567888888888888777
Q ss_pred cCCCCC---------CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHh
Q psy3721 106 SRKGPN---------TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKEL 167 (207)
Q Consensus 106 ~~~~~~---------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l 167 (207)
.+.... ..-.++|++||+..+.+.+|+..|..+|.+..+++. ||+|++.|.. +++.+|+...
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 654321 123679999999999999999999999987776654 8899999999 9999998776
Q ss_pred CCceeC
Q psy3721 168 NGMMVD 173 (207)
Q Consensus 168 ~g~~~~ 173 (207)
+++.++
T Consensus 730 d~~~~g 735 (881)
T KOG0128|consen 730 DSCFFG 735 (881)
T ss_pred hhhhhh
Confidence 666554
No 161
>KOG1855|consensus
Probab=97.14 E-value=0.00043 Score=58.25 Aligned_cols=72 Identities=22% Similarity=0.257 Sum_probs=58.7
Q ss_pred ccCCCCCCCC--CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEEC---------------------CEEEEEeCChH
Q psy3721 24 CRNMPGFSSV--GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK---------------------NYGFVHMENDE 80 (207)
Q Consensus 24 ~~~~~~~~~~--~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~---------------------~~~fV~f~~~~ 80 (207)
+..+|..... ..++|.+.|||.+-..+-|.++|+.+|.|..|.+.+ -+|+|+|...+
T Consensus 218 isPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~ 297 (484)
T KOG1855|consen 218 ISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVE 297 (484)
T ss_pred cCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhH
Confidence 3444554443 779999999999988899999999999999999972 26899999999
Q ss_pred HHHHHHHHhcCCeeC
Q psy3721 81 EGRTAIKELNGQIVN 95 (207)
Q Consensus 81 ~a~~a~~~l~~~~~~ 95 (207)
.|.+|.+.++...-+
T Consensus 298 ~A~KA~e~~~~e~~w 312 (484)
T KOG1855|consen 298 AARKARELLNPEQNW 312 (484)
T ss_pred HHHHHHHhhchhhhh
Confidence 999999888654443
No 162
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.08 E-value=0.0029 Score=43.42 Aligned_cols=70 Identities=14% Similarity=0.260 Sum_probs=51.2
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEE-------------EE--CCEEEEEeCChHHHHHHHHHhcCCeeCCe-
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECD-------------VV--KNYGFVHMENDEEGRTAIKELNGQIVNEK- 97 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~-------------~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g~- 97 (207)
..+-|.|-+.|+. ....+.+.|++||.|.+.. .. .++.-|+|.++.+|.+|+ ..||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 4567889999988 4566778999999998875 22 568899999999999999 4599999775
Q ss_pred eeEEEEcc
Q psy3721 98 PLKIEAAT 105 (207)
Q Consensus 98 ~i~v~~~~ 105 (207)
.+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 55566664
No 163
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.02 E-value=0.0025 Score=43.78 Aligned_cols=70 Identities=21% Similarity=0.308 Sum_probs=49.9
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEE-------------Ee--cCEEEEEEcc-HhHHHHHHHhCCceeCCe-e
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECD-------------IV--RNYGFVHIDS-PDINKCIKELNGMMVDGK-P 176 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~-------------~~--~~~afv~f~~-e~a~~A~~~l~g~~~~g~-~ 176 (207)
...|.|-+.|...+ ..+-+.|+.||.|.+.. .. .+-..|+|.+ .+|.+|+.. ||..+.|. -
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 35677888888844 45567889999988875 33 5578899999 999999999 99999885 5
Q ss_pred EEEEeccCc
Q psy3721 177 MKVQISTSR 185 (207)
Q Consensus 177 i~v~~~~~~ 185 (207)
+-|.+.++.
T Consensus 84 vGV~~~~~~ 92 (100)
T PF05172_consen 84 VGVKPCDPA 92 (100)
T ss_dssp EEEEE-HHH
T ss_pred EEEEEcHHh
Confidence 557777543
No 164
>KOG0112|consensus
Probab=97.02 E-value=0.0011 Score=60.42 Aligned_cols=78 Identities=18% Similarity=0.400 Sum_probs=69.3
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECC--EEEEEeCChHHHHHHHHHhcCCeeCC--eeeEEEEccc
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--YGFVHMENDEEGRTAIKELNGQIVNE--KPLKIEAATS 106 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~--~~fV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~ 106 (207)
+....+.+|+++|++++....|...|..||.|..|.+.+| |++|.|.+...++.|++.+-+..+++ +.+.|.++..
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 4556789999999999999999999999999999999854 99999999999999999999999965 6788877765
Q ss_pred CC
Q psy3721 107 RK 108 (207)
Q Consensus 107 ~~ 108 (207)
..
T Consensus 531 ~~ 532 (975)
T KOG0112|consen 531 PG 532 (975)
T ss_pred CC
Confidence 43
No 165
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.00 E-value=0.0049 Score=44.95 Aligned_cols=57 Identities=28% Similarity=0.393 Sum_probs=47.1
Q ss_pred HHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCC
Q psy3721 51 LIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108 (207)
Q Consensus 51 ~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 108 (207)
+|.+.|..||.+.-++...+.-+|+|.+.+.|-+|+ .++|..++|+.|+|..-.+..
T Consensus 52 ~ll~~~~~~GevvLvRfv~~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGDTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETTCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE-----
T ss_pred HHHHHHHhCCceEEEEEeCCeEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCccH
Confidence 577788999999988888999999999999999998 789999999999999876653
No 166
>KOG2314|consensus
Probab=96.99 E-value=0.0032 Score=54.93 Aligned_cols=69 Identities=22% Similarity=0.369 Sum_probs=54.9
Q ss_pred cccEEEcCCCCC--CCHH----HHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCee-CCeeeE
Q psy3721 35 TFKIFIGNVNPG--TSVE----LIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIV-NEKPLK 100 (207)
Q Consensus 35 ~~~l~V~~lp~~--~t~~----~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~-~g~~i~ 100 (207)
...|+|.|+|.- ...+ .|.++|+.+|++....++ +||.|++|.+..+|+.|++.|||..+ .++...
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 457889999843 2222 245679999999998887 68999999999999999999999998 556666
Q ss_pred EEE
Q psy3721 101 IEA 103 (207)
Q Consensus 101 v~~ 103 (207)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 644
No 167
>KOG1996|consensus
Probab=96.90 E-value=0.0023 Score=51.53 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=48.9
Q ss_pred hhHHHHhcccCCcEEEEEEe--c-------CEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 128 APEVRELFVPYGTVVECDIV--R-------NYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 128 ~~~l~~~f~~~g~i~~~~~~--~-------~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
++++++.+++||.|..|.++ . -.-||+|.. ++|-+|+-.|||.+|+|+.++-.|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 47888999999999999887 1 158999999 99999999999999999999866644
No 168
>KOG2416|consensus
Probab=96.78 E-value=0.0022 Score=56.26 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=63.2
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcc-cCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCcee---CCeeEEEEecc
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFV-PYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMV---DGKPMKVQIST 183 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~-~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~---~g~~i~v~~~~ 183 (207)
..+++.|||.||-.-.|.-.|+.++. ..|.|+...+. +.+|||.|.+ ++|......|||..+ +++.|.+.|..
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 44678999999999999999999998 55567776553 8899999999 999999999999985 56788888887
Q ss_pred C
Q psy3721 184 S 184 (207)
Q Consensus 184 ~ 184 (207)
.
T Consensus 521 ~ 521 (718)
T KOG2416|consen 521 A 521 (718)
T ss_pred h
Confidence 3
No 169
>KOG1995|consensus
Probab=96.68 E-value=0.0027 Score=52.45 Aligned_cols=77 Identities=17% Similarity=0.196 Sum_probs=65.5
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEE--------EEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeC
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE--------CDVV--------KNYGFVHMENDEEGRTAIKELNGQIVN 95 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~--------i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~ 95 (207)
....-+|||-++|..+++++|.++|..+|.|.. |++. ++-|.|+|.+...|+.|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345678999999999999999999999998842 2222 578999999999999999999999999
Q ss_pred CeeeEEEEcccCC
Q psy3721 96 EKPLKIEAATSRK 108 (207)
Q Consensus 96 g~~i~v~~~~~~~ 108 (207)
+..|+|..+....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998876544
No 170
>KOG2193|consensus
Probab=96.62 E-value=0.002 Score=54.32 Aligned_cols=73 Identities=25% Similarity=0.393 Sum_probs=61.8
Q ss_pred ceeeecCCCCCCChhHHHHhcccC--CcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCce-eCCeeEEEEeccCccC
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPY--GTVVECDIVRNYGFVHIDS-PDINKCIKELNGMM-VDGKPMKVQISTSRVR 187 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~--g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~-~~g~~i~v~~~~~~~~ 187 (207)
+.+|++||.+..+.++|..+|... +.-..+-+..+|+|+.+.+ ..|.+|+..++|+. +.|.++.+.+.-++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 468999999999999999999654 3334445558999999999 99999999999988 8999999998877653
No 171
>KOG1995|consensus
Probab=96.61 E-value=0.0015 Score=53.91 Aligned_cols=74 Identities=18% Similarity=0.299 Sum_probs=63.8
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEE--------e--------cCEEEEEEcc-HhHHHHHHHhCCceeCCe
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI--------V--------RNYGFVHIDS-PDINKCIKELNGMMVDGK 175 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~--------~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~ 175 (207)
...++||.++|..++..+|.++|..+|.|..=+- - |+.|.|.|.+ ..|+.|+.-+++..+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4578999999999999999999999997765211 1 6789999999 999999999999999999
Q ss_pred eEEEEeccCcc
Q psy3721 176 PMKVQISTSRV 186 (207)
Q Consensus 176 ~i~v~~~~~~~ 186 (207)
.|+|..+....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999887543
No 172
>KOG0115|consensus
Probab=96.52 E-value=0.0069 Score=47.94 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=69.6
Q ss_pred HHHHHHHHhcCCeeCCeeeEEEEcccCCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEE
Q psy3721 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFV 153 (207)
Q Consensus 81 ~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv 153 (207)
-|..|-.+|++....|+.+.|.++.. ..|+|.||+..++.+.+...|+.||.|..-.+. .+.++|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~--------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v 77 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH--------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIV 77 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc--------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchh
Confidence 45566678899999999999999884 469999999999999999999999988876554 458999
Q ss_pred EEcc-HhHHHHHHHhCCc
Q psy3721 154 HIDS-PDINKCIKELNGM 170 (207)
Q Consensus 154 ~f~~-e~a~~A~~~l~g~ 170 (207)
.|.. ..|.+|+...+-.
T Consensus 78 ~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 78 EFAKKPNARKAARRCREG 95 (275)
T ss_pred hhhcchhHHHHHHHhccC
Confidence 9999 8888988887433
No 173
>KOG4849|consensus
Probab=96.29 E-value=0.0033 Score=51.83 Aligned_cols=72 Identities=11% Similarity=0.203 Sum_probs=60.2
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCc--eEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGK--VVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~--i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
....+||+||-+.+|++||.+.....|. +.++++. +|||+|...+....++.++.|....++|..-.|-.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 3567899999999999999999888774 3344443 78999999999999999999999999998877765
Q ss_pred cc
Q psy3721 104 AT 105 (207)
Q Consensus 104 ~~ 105 (207)
.+
T Consensus 159 ~N 160 (498)
T KOG4849|consen 159 YN 160 (498)
T ss_pred cc
Confidence 54
No 174
>KOG4210|consensus
Probab=96.26 E-value=0.0041 Score=50.91 Aligned_cols=76 Identities=16% Similarity=0.382 Sum_probs=65.0
Q ss_pred CCcccEE-EcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 33 VGTFKIF-IGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 33 ~~~~~l~-V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
....++| |++++..+++++|+..|..+|.|..+.+. +++|+|+|.+...+..++.- +...+.++.+.+..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3344555 99999999999999999999999998887 57999999999999999876 78888899999988
Q ss_pred cccCCC
Q psy3721 104 ATSRKG 109 (207)
Q Consensus 104 ~~~~~~ 109 (207)
..+...
T Consensus 261 ~~~~~~ 266 (285)
T KOG4210|consen 261 DEPRPK 266 (285)
T ss_pred CCCCcc
Confidence 776543
No 175
>KOG1996|consensus
Probab=96.26 E-value=0.014 Score=47.10 Aligned_cols=58 Identities=24% Similarity=0.240 Sum_probs=49.2
Q ss_pred HHHHHHHhhcCCceEEEEEE--C-------CEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 49 VELIRPLFEKYGKVVECDVV--K-------NYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 49 ~~~l~~~f~~~g~i~~i~~~--~-------~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
++++++-++.||.|.++.+. . --.||+|...+.|.+|+-.|+|..|+|+.++..+.+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 45667788999999988776 2 2479999999999999999999999999998887654
No 176
>KOG0129|consensus
Probab=96.26 E-value=0.013 Score=50.75 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=48.7
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhh-cCCceEEEEEE--------CCEEEEEeCChHHHHHHHH
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFE-KYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~-~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~ 87 (207)
++.+|||||+||.-++.++|..++. -||.|.-+-|- +|.|-|+|.+...-.+|+.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 6789999999999999999999999 78988655543 7899999999999999985
No 177
>KOG2202|consensus
Probab=96.23 E-value=0.0026 Score=50.30 Aligned_cols=56 Identities=25% Similarity=0.484 Sum_probs=47.3
Q ss_pred HHHHhh-cCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccC
Q psy3721 52 IRPLFE-KYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107 (207)
Q Consensus 52 l~~~f~-~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 107 (207)
|...++ +||+|.++.+. .|-.+|.|..+++|++|+..|++..+.|+.|....+...
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 333344 79999988776 577899999999999999999999999999999987643
No 178
>KOG2202|consensus
Probab=96.07 E-value=0.0024 Score=50.49 Aligned_cols=57 Identities=21% Similarity=0.416 Sum_probs=48.5
Q ss_pred hHHHHhcc-cCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 129 PEVRELFV-PYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 129 ~~l~~~f~-~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
+++...++ +||.|+.+.+- .|-++|.|.. ++|++|+..|||..+.|++|...+....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 45555555 99999998664 6789999999 9999999999999999999998887644
No 179
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.00 E-value=0.01 Score=45.13 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=44.6
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhc-CCce---EEEEEE----------CCEEEEEeCChHHHHHHHHHhcCCeeCC
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEK-YGKV---VECDVV----------KNYGFVHMENDEEGRTAIKELNGQIVNE 96 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~-~g~i---~~i~~~----------~~~~fV~f~~~~~a~~a~~~l~~~~~~g 96 (207)
...+.|.|.+|||++|++++.+.++. ++.- ..+.-. -.-|||.|.+.+++....+.++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 45679999999999999999987776 6655 222211 1259999999999999999999988743
No 180
>KOG2314|consensus
Probab=95.98 E-value=0.015 Score=50.86 Aligned_cols=70 Identities=24% Similarity=0.320 Sum_probs=55.5
Q ss_pred CceeeecCCCCCCC------hhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeC-CeeEE
Q psy3721 114 TTKVFVGNLSDNTR------APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVD-GKPMK 178 (207)
Q Consensus 114 ~~~l~v~nl~~~~t------~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~-g~~i~ 178 (207)
...|+|.|+|---. ...|.++|+++|.+....++ +|+.|++|.+ .+|..|++.|||..++ ++...
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 35788888886322 35677899999999998887 7899999999 9999999999999974 55666
Q ss_pred EEecc
Q psy3721 179 VQIST 183 (207)
Q Consensus 179 v~~~~ 183 (207)
|..-+
T Consensus 138 v~~f~ 142 (698)
T KOG2314|consen 138 VRLFK 142 (698)
T ss_pred eehhh
Confidence 55443
No 181
>KOG4676|consensus
Probab=95.93 E-value=0.0077 Score=50.43 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=58.7
Q ss_pred ceeeecCCCCCCChhHHHHhcccCCcEEEEEEec-----------CEEEEEEccHhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR-----------NYGFVHIDSPDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~-----------~~afv~f~~e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
..|.|.||.++.+.+.++.+|...|.|..+++.. ..|||.|.+....-+..+|.++.+-++.|-|-...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 4899999999999999999999999999999873 47999999966667778889999888877765543
No 182
>KOG2416|consensus
Probab=95.89 E-value=0.0072 Score=53.09 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=61.5
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhc-CCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCee---CCeeeEEEEcc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEK-YGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIV---NEKPLKIEAAT 105 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~-~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~---~g~~i~v~~~~ 105 (207)
..+..|+|.||-...|.-.|+.++++ .|.|.+.||- +..|||.|.+.++|......|||..- +++.|.+.+..
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 45678999999999999999999995 5566677664 78999999999999999999999875 56777777664
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.83 E-value=0.06 Score=33.49 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=41.6
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcC----CceEEEEEE-CCEEEEEeCChHHHHHHHHHh
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKY----GKVVECDVV-KNYGFVHMENDEEGRTAIKEL 89 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~----g~i~~i~~~-~~~~fV~f~~~~~a~~a~~~l 89 (207)
..|+|.++. .++.++++.+|..| ++. .|... -.-|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEecCCcEEEEECCHHHHHHHHHcC
Confidence 378999986 68889999999999 544 44444 457899999999999998653
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.82 E-value=0.079 Score=34.91 Aligned_cols=55 Identities=18% Similarity=0.358 Sum_probs=43.9
Q ss_pred ceeeecCCCCCCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCC
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNG 169 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g 169 (207)
.-+|--..|..--..||.++|+.||.|.---+....|||.... +.|..++..++-
T Consensus 9 dHVFhltFPkeWK~~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEeCchHhhhhhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHHhcc
Confidence 3455445999999999999999999998888889999999999 999998888764
No 185
>KOG2591|consensus
Probab=95.82 E-value=0.029 Score=49.06 Aligned_cols=67 Identities=21% Similarity=0.464 Sum_probs=53.8
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhc--CCceEEEEEE-CCEEEEEeCChHHHHHHHHHhcC--CeeCCeee
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEK--YGKVVECDVV-KNYGFVHMENDEEGRTAIKELNG--QIVNEKPL 99 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~--~g~i~~i~~~-~~~~fV~f~~~~~a~~a~~~l~~--~~~~g~~i 99 (207)
...|.|.+..||..+..++++.||.. |-++.++... ++-.||+|++..||+.|.+.|.. +.|.|+.|
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 34678899999999999999999985 5566777765 77899999999999999886653 34566554
No 186
>KOG2591|consensus
Probab=95.79 E-value=0.029 Score=49.07 Aligned_cols=92 Identities=21% Similarity=0.335 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCCeeCCeeeEEEEcccCCCCCCCCceeeecCCCCCCChhHHHHhccc--CCcEEEEEEe-cCEEEEEEc
Q psy3721 80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVP--YGTVVECDIV-RNYGFVHID 156 (207)
Q Consensus 80 ~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~--~g~i~~~~~~-~~~afv~f~ 156 (207)
....+++++..+..+..+-.+|.... ..+.+.+..||.++..++++.+|.. +-.+.+|.+- +.-=||+|.
T Consensus 148 dLI~Evlresp~VqvDekgekVrp~~-------kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nWyITfe 220 (684)
T KOG2591|consen 148 DLIVEVLRESPNVQVDEKGEKVRPNH-------KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNWYITFE 220 (684)
T ss_pred HHHHHHHhcCCCceeccCccccccCc-------ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCceEEEee
Confidence 44455666666777766655665333 2567889999999999999999965 5578888775 667889999
Q ss_pred c-HhHHHHHHHhCCce--eCCeeEE
Q psy3721 157 S-PDINKCIKELNGMM--VDGKPMK 178 (207)
Q Consensus 157 ~-e~a~~A~~~l~g~~--~~g~~i~ 178 (207)
+ .||++|...|.... |.|++|.
T Consensus 221 sd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 221 SDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cchhHHHHHHHHHHHHHhhcCcchh
Confidence 9 99999987765433 6666554
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.62 E-value=0.058 Score=33.56 Aligned_cols=52 Identities=12% Similarity=0.245 Sum_probs=40.8
Q ss_pred CceeeecCCCCCCChhHHHHhcccC----CcEEEEEE-ecCEEEEEEcc-HhHHHHHHHh
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPY----GTVVECDI-VRNYGFVHIDS-PDINKCIKEL 167 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~----g~i~~~~~-~~~~afv~f~~-e~a~~A~~~l 167 (207)
...|+|.+++. ++.++|+.+|..| +. .++.- .-..|-|.|.+ +.|.+|+..|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~-~~IEWIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGP-FRIEWIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCC-ceEEEecCCcEEEEECCHHHHHHHHHcC
Confidence 35799999855 8889999999988 43 33333 35689999999 9999999764
No 188
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.60 E-value=0.068 Score=34.47 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=38.7
Q ss_pred CCChhHHHHhcccCC-----cEEEEEEecCEEEEEEccHhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 125 NTRAPEVRELFVPYG-----TVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 125 ~~t~~~l~~~f~~~g-----~i~~~~~~~~~afv~f~~e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
.++..+|..++...+ .|-.+++...|+||+-..+.|.+++..|++..+.|++++|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPEEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-TT-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECHHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 577788888876553 5788999999999999888999999999999999999999864
No 189
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.54 E-value=0.1 Score=37.95 Aligned_cols=72 Identities=7% Similarity=0.074 Sum_probs=55.0
Q ss_pred CCcccEEEcCCCCCCC-HHH---HHHHhhcCCceEEEEEE-CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 33 VGTFKIFIGNVNPGTS-VEL---IRPLFEKYGKVVECDVV-KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t-~~~---l~~~f~~~g~i~~i~~~-~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
.+-.+|.|.=|..++. .+| +...++.||+|.++.+. +--|.|.|++...|.+|+..++. ...|..+...|..
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 4456777777766643 233 44456789999999988 66899999999999999988776 6667888887754
No 190
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.48 E-value=0.039 Score=36.90 Aligned_cols=65 Identities=12% Similarity=0.262 Sum_probs=47.1
Q ss_pred EEEEeCChHHHHHHHHHhc-CCeeCCeeeEEEEcccCCC--------CCCCCceeeecCCCCCCChhHHHHhcc
Q psy3721 72 GFVHMENDEEGRTAIKELN-GQIVNEKPLKIEAATSRKG--------PNTPTTKVFVGNLSDNTRAPEVRELFV 136 (207)
Q Consensus 72 ~fV~f~~~~~a~~a~~~l~-~~~~~g~~i~v~~~~~~~~--------~~~~~~~l~v~nl~~~~t~~~l~~~f~ 136 (207)
|+|+|.+++-|+..++.-. ...+++..+.|........ ...+.++|.|.|||...++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999886322 2345676666665543322 234578899999999999999997754
No 191
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.36 E-value=0.056 Score=41.35 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=46.2
Q ss_pred CCHHHHHHHhhcCCceEEEEEECCE--EEEEeCChHHHHHHHHHhc--CCeeCCeeeEEEEcccC
Q psy3721 47 TSVELIRPLFEKYGKVVECDVVKNY--GFVHMENDEEGRTAIKELN--GQIVNEKPLKIEAATSR 107 (207)
Q Consensus 47 ~t~~~l~~~f~~~g~i~~i~~~~~~--~fV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~~~~~ 107 (207)
-..+.|+++|..++.+......++| ..|.|.+.+.|..+...|+ +..+.|..+++.++...
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3458899999999999888888765 7999999999999999999 89999999999988543
No 192
>KOG4849|consensus
Probab=95.32 E-value=0.011 Score=48.78 Aligned_cols=70 Identities=16% Similarity=0.329 Sum_probs=56.2
Q ss_pred CceeeecCCCCCCChhHHHHhcccCC--cEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCe-eEEEEe
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYG--TVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGK-PMKVQI 181 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g--~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~-~i~v~~ 181 (207)
...+||+||-+.+|+++|.+.+..-| .+.+++++ ||||.+...+ .+..+.+..|-.+.++|. ++.+.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 36799999999999999999887777 56666665 7899999999 777888888888888885 344444
Q ss_pred cc
Q psy3721 182 ST 183 (207)
Q Consensus 182 ~~ 183 (207)
.+
T Consensus 160 NK 161 (498)
T KOG4849|consen 160 NK 161 (498)
T ss_pred ch
Confidence 43
No 193
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.25 E-value=0.05 Score=41.62 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=44.5
Q ss_pred ChhHHHHhcccCCcEEEEEEecC--EEEEEEcc-HhHHHHHHHhC--CceeCCeeEEEEeccCc
Q psy3721 127 RAPEVRELFVPYGTVVECDIVRN--YGFVHIDS-PDINKCIKELN--GMMVDGKPMKVQISTSR 185 (207)
Q Consensus 127 t~~~l~~~f~~~g~i~~~~~~~~--~afv~f~~-e~a~~A~~~l~--g~~~~g~~i~v~~~~~~ 185 (207)
..+.|+++|..++.+..+...+. ...|.|.+ ++|.+|...|+ +..+.|..+++.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 34789999999999888888876 47788999 99999999999 99999999999999644
No 194
>KOG2135|consensus
Probab=95.18 E-value=0.02 Score=49.15 Aligned_cols=86 Identities=17% Similarity=0.292 Sum_probs=70.8
Q ss_pred ecccCCCCCCCCCcccEEEcCCCCC-CCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCCee
Q psy3721 22 ISCRNMPGFSSVGTFKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNEKP 98 (207)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~V~~lp~~-~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~ 98 (207)
.+.+.+++.-....+.|-+...|.. -+-.+|...|..||.|..|.+. ...|.|+|.+..+|-+|. ..++..|.++-
T Consensus 359 rrG~gv~g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~-~s~~avlnnr~ 437 (526)
T KOG2135|consen 359 RRGRGVPGHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAY-ASHGAVLNNRF 437 (526)
T ss_pred ccCCCCCcchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchh-ccccceecCce
Confidence 4555666666667778888888877 4667899999999999999886 368999999999997776 56899999999
Q ss_pred eEEEEcccCC
Q psy3721 99 LKIEAATSRK 108 (207)
Q Consensus 99 i~v~~~~~~~ 108 (207)
|++.|.++..
T Consensus 438 iKl~whnps~ 447 (526)
T KOG2135|consen 438 IKLFWHNPSP 447 (526)
T ss_pred eEEEEecCCc
Confidence 9999998754
No 195
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.11 E-value=0.093 Score=38.16 Aligned_cols=73 Identities=14% Similarity=0.257 Sum_probs=56.6
Q ss_pred CCCCceeeecCCCCCCCh----hHHHHhcccCCcEEEEEEe-cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccC
Q psy3721 111 NTPTTKVFVGNLSDNTRA----PEVRELFVPYGTVVECDIV-RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTS 184 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~----~~l~~~f~~~g~i~~~~~~-~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~ 184 (207)
.++-.+|.|.=|..++.. ..+...++.||+|.++... +..|.|.|.+ .+|.+|+..+.. ...|..+.+.|--.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqqr 161 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQR 161 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecccc
Confidence 345678888876665443 3444566899999999887 8899999999 999999999776 56778888887643
No 196
>KOG2135|consensus
Probab=94.52 E-value=0.022 Score=48.88 Aligned_cols=67 Identities=7% Similarity=0.187 Sum_probs=54.6
Q ss_pred ecCCCCC-CChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCcc
Q psy3721 119 VGNLSDN-TRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186 (207)
Q Consensus 119 v~nl~~~-~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 186 (207)
+.-.|.. -+-.+|-..|..||.|..|.+. ...|.|+|.+ .+|-+|... ++..|.|+.|+|.|..+.+
T Consensus 377 lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 377 LEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhcc-ccceecCceeEEEEecCCc
Confidence 3334443 3458899999999999999987 3689999999 888776655 8999999999999999854
No 197
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.18 E-value=0.48 Score=33.11 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=45.1
Q ss_pred CceeeecCCCCCCChhHHHHhcccCC-cEEEEEEecC------EEEEEEcc-HhHHHHHHHhCCceeCC
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYG-TVVECDIVRN------YGFVHIDS-PDINKCIKELNGMMVDG 174 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g-~i~~~~~~~~------~afv~f~~-e~a~~A~~~l~g~~~~g 174 (207)
...+.+...|+-++.++|..+.+.+- .|..+++.|. .+.++|.+ ++|..-...+||+.+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34455555556666677776666664 5778888733 79999999 99999999999999754
No 198
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.13 E-value=0.083 Score=40.15 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=49.5
Q ss_pred CCceeeecCCCCCCChhHHHHhccc-CCcE---EEEEEe----------cCEEEEEEcc-HhHHHHHHHhCCceeCC---
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVP-YGTV---VECDIV----------RNYGFVHIDS-PDINKCIKELNGMMVDG--- 174 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~-~g~i---~~~~~~----------~~~afv~f~~-e~a~~A~~~l~g~~~~g--- 174 (207)
....|.|..||+++|+++..+.+.. ++.. .++.-. ...|+|.|.+ ++...-...++|..|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3568999999999999999998887 6655 333322 1269999999 99999999999988643
Q ss_pred --eeEEEEeccC
Q psy3721 175 --KPMKVQISTS 184 (207)
Q Consensus 175 --~~i~v~~~~~ 184 (207)
....|.++--
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3445777754
No 199
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.00 E-value=0.48 Score=30.46 Aligned_cols=58 Identities=21% Similarity=0.370 Sum_probs=36.7
Q ss_pred CCCHHHHHHHhhcCCc-----eEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 46 GTSVELIRPLFEKYGK-----VVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 46 ~~t~~~l~~~f~~~g~-----i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
+++..+|..++...+. |-+|.+...|+||+.... .|..++..|++..+.|+.++|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4778888888766533 568889999999998766 778899999999999999999864
No 200
>KOG2253|consensus
Probab=93.86 E-value=0.033 Score=49.62 Aligned_cols=81 Identities=17% Similarity=0.221 Sum_probs=69.3
Q ss_pred EEEEcccCCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEE
Q psy3721 100 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMK 178 (207)
Q Consensus 100 ~v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~ 178 (207)
.+.+..+...+.++..++||+|+-+.+..+-++.+...+|.|..+...+ |||+.|.. ....+|+..++-..++|..+.
T Consensus 26 ~~~p~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 26 YVVPIQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred cccCCcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 4444455555667889999999999999999999999999998888777 99999999 999999999999989888776
Q ss_pred EEe
Q psy3721 179 VQI 181 (207)
Q Consensus 179 v~~ 181 (207)
+..
T Consensus 105 ~~~ 107 (668)
T KOG2253|consen 105 ENV 107 (668)
T ss_pred ccc
Confidence 555
No 201
>KOG4574|consensus
Probab=93.68 E-value=0.068 Score=49.07 Aligned_cols=73 Identities=21% Similarity=0.272 Sum_probs=61.6
Q ss_pred eeecCCCCCCChhHHHHhcccCCcEEEEEEecC--EEEEEEcc-HhHHHHHHHhCCce--eCCeeEEEEeccCccCCC
Q psy3721 117 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--YGFVHIDS-PDINKCIKELNGMM--VDGKPMKVQISTSRVRQR 189 (207)
Q Consensus 117 l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~--~afv~f~~-e~a~~A~~~l~g~~--~~g~~i~v~~~~~~~~~~ 189 (207)
.++.|.+-..+...|..+|..||.|.+.+..|+ +|.|.|.+ +.|..|...|+|++ .-|-+.+|.+++.-+--.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~e 378 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYE 378 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccccc
Confidence 445556666778999999999999999999765 79999999 99999999999999 577789999999765433
No 202
>KOG2068|consensus
Probab=93.57 E-value=0.029 Score=46.18 Aligned_cols=72 Identities=22% Similarity=0.475 Sum_probs=58.8
Q ss_pred CceeeecCCCCCCChhHHH---HhcccCCcEEEEEEecC-----------EEEEEEcc-HhHHHHHHHhCCceeCCeeEE
Q psy3721 114 TTKVFVGNLSDNTRAPEVR---ELFVPYGTVVECDIVRN-----------YGFVHIDS-PDINKCIKELNGMMVDGKPMK 178 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~---~~f~~~g~i~~~~~~~~-----------~afv~f~~-e~a~~A~~~l~g~~~~g~~i~ 178 (207)
.+.+||-+|+...-++.+- +.|..||.|..+...++ .++|+|.. ++|.+++...+|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3567888888876554443 67889999999988742 48999999 999999999999999999988
Q ss_pred EEeccCc
Q psy3721 179 VQISTSR 185 (207)
Q Consensus 179 v~~~~~~ 185 (207)
..+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8887754
No 203
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.37 E-value=1.1 Score=31.24 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=43.3
Q ss_pred ccEEEcCCCCC-CCHHHHHHHhhcCC-ceEEEEEECC------EEEEEeCChHHHHHHHHHhcCCeeCC
Q psy3721 36 FKIFIGNVNPG-TSVELIRPLFEKYG-KVVECDVVKN------YGFVHMENDEEGRTAIKELNGQIVNE 96 (207)
Q Consensus 36 ~~l~V~~lp~~-~t~~~l~~~f~~~g-~i~~i~~~~~------~~fV~f~~~~~a~~a~~~l~~~~~~g 96 (207)
+.+.+-..|+. ++-++|..+.+.+- .|..+++.++ -+++.|.+.++|+...+.+||..|..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 45555555655 55556666656554 3566677643 37999999999999999999998843
No 204
>KOG0115|consensus
Probab=92.54 E-value=0.15 Score=40.55 Aligned_cols=59 Identities=17% Similarity=0.336 Sum_probs=49.5
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCee
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIV 94 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~ 94 (207)
..|||.||+..++-+.+..-|+.||+|....+. .+-++|.|...-.|.+|.....-.-+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcc
Confidence 579999999999999999999999999765554 35789999999999999987743333
No 205
>KOG0804|consensus
Probab=92.19 E-value=0.57 Score=40.30 Aligned_cols=65 Identities=12% Similarity=0.224 Sum_probs=55.3
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCC-ceEEEEEECC------EEEEEeCChHHHHHHHHHhcCCeeCC
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYG-KVVECDVVKN------YGFVHMENDEEGRTAIKELNGQIVNE 96 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g-~i~~i~~~~~------~~fV~f~~~~~a~~a~~~l~~~~~~g 96 (207)
+.+.+.|.|..+|..+|-.||..|+..+- .|..+.+.|+ -.+|.|.+.++|......+||..|..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 33478999999999999999999988664 4678888753 37999999999999999999999854
No 206
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=91.86 E-value=0.24 Score=36.18 Aligned_cols=100 Identities=16% Similarity=0.093 Sum_probs=71.0
Q ss_pred CCHHHHHHHhh----cCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCCCCC-----CCcee
Q psy3721 47 TSVELIRPLFE----KYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNT-----PTTKV 117 (207)
Q Consensus 47 ~t~~~l~~~f~----~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~-----~~~~l 117 (207)
.+-..|...+. ..|.+.-..+-.++..+.|.+.+++.++++ .....+.|..+.+....+...... ...-|
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWV 107 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWV 107 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchhh
Confidence 45555555554 344444444458899999999999998885 355567788888887775443222 22346
Q ss_pred eecCCCCC-CChhHHHHhcccCCcEEEEEEe
Q psy3721 118 FVGNLSDN-TRAPEVRELFVPYGTVVECDIV 147 (207)
Q Consensus 118 ~v~nl~~~-~t~~~l~~~f~~~g~i~~~~~~ 147 (207)
-+.|||.. .+++-++.+-+.+|.+.++...
T Consensus 108 ri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 108 RIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred hhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 67899996 7778899999999999988775
No 207
>KOG4285|consensus
Probab=90.98 E-value=1.5 Score=35.91 Aligned_cols=71 Identities=18% Similarity=0.342 Sum_probs=54.6
Q ss_pred cccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCC-eeeEEEEcccC
Q psy3721 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNE-KPLKIEAATSR 107 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g-~~i~v~~~~~~ 107 (207)
..=|.|-++|+.-. ..|..+|++||.|.+.... -++-.|.|.+.-+|++|+ ..+|..+.| ..|-|..+..+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecCCH
Confidence 45677778887654 4567899999999988776 358899999999999999 458888855 55667765543
No 208
>KOG0804|consensus
Probab=90.95 E-value=1 Score=38.84 Aligned_cols=61 Identities=13% Similarity=0.276 Sum_probs=54.5
Q ss_pred CceeeecCCCCCCChhHHHHhcccCC-cEEEEEEecC------EEEEEEcc-HhHHHHHHHhCCceeCC
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYG-TVVECDIVRN------YGFVHIDS-PDINKCIKELNGMMVDG 174 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g-~i~~~~~~~~------~afv~f~~-e~a~~A~~~l~g~~~~g 174 (207)
+..|+|..+|..++..||-.++..+- .|.+++++|. .+.|+|.+ ++|..-...+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999999998775 6888988843 79999999 99999999999999755
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.79 E-value=1.9 Score=27.15 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=45.0
Q ss_pred CCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEE
Q psy3721 46 GTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101 (207)
Q Consensus 46 ~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 101 (207)
.++-++++..+..|+ ..+|...+.-=||.|.+.++|+++....++..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 578899999999986 4455555656689999999999999999999888777654
No 210
>KOG2068|consensus
Probab=90.76 E-value=0.11 Score=42.78 Aligned_cols=73 Identities=18% Similarity=0.342 Sum_probs=57.5
Q ss_pred cccEEEcCCCCCCCHHHHHH---HhhcCCceEEEEEECC-----------EEEEEeCChHHHHHHHHHhcCCeeCCeeeE
Q psy3721 35 TFKIFIGNVNPGTSVELIRP---LFEKYGKVVECDVVKN-----------YGFVHMENDEEGRTAIKELNGQIVNEKPLK 100 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~l~~---~f~~~g~i~~i~~~~~-----------~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 100 (207)
..-+||-+|+...-.+++.+ .|..||.|.++.+.++ -++|+|...++|..++...+|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 34568888887755444433 6888999988887642 379999999999999999999999999988
Q ss_pred EEEcccC
Q psy3721 101 IEAATSR 107 (207)
Q Consensus 101 v~~~~~~ 107 (207)
.....++
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8776654
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.52 E-value=2.4 Score=26.68 Aligned_cols=54 Identities=9% Similarity=0.190 Sum_probs=44.8
Q ss_pred CCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEE
Q psy3721 125 NTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179 (207)
Q Consensus 125 ~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v 179 (207)
.++-++++..+..|+ -.++...+.-=+|.|.+ ++|.+.....||+.+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 577889999999996 45666666667899999 9999999999999988877653
No 212
>KOG4285|consensus
Probab=89.35 E-value=0.69 Score=37.80 Aligned_cols=66 Identities=26% Similarity=0.313 Sum_probs=49.3
Q ss_pred ceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCceeCCe-eEEEEec
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGK-PMKVQIS 182 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~~g~-~i~v~~~ 182 (207)
..+.|-++|..... -|-.+|++||.|.+.... -+.-+|+|.+ -+|.+|+.+ ||+.|+|. -|.|+..
T Consensus 198 ~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 198 TWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPC 267 (350)
T ss_pred ceEEEeccCccchh-HHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeec
Confidence 45666677765444 345678999998887665 3478999999 999999999 99999885 3445553
No 213
>KOG2253|consensus
Probab=88.98 E-value=0.3 Score=43.78 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=59.9
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
+..++||+|+...+..+-+......+|-|.+..... |||.+|..+.-+..|+..++...+.|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 456899999999999999999999999887665545 999999999999999999998888888877665
No 214
>KOG4574|consensus
Probab=86.21 E-value=0.55 Score=43.45 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=58.9
Q ss_pred cEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECC--EEEEEeCChHHHHHHHHHhcCCee--CCeeeEEEEcccC
Q psy3721 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--YGFVHMENDEEGRTAIKELNGQIV--NEKPLKIEAATSR 107 (207)
Q Consensus 37 ~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~--~~fV~f~~~~~a~~a~~~l~~~~~--~g~~i~v~~~~~~ 107 (207)
+.++.|.+-+.+-.-|..+|+.||.|.+.+..++ .|.|+|.+.+.|..|...++|+.+ -|-..+|..++.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3445566667788889999999999999999875 699999999999999999999875 6777788777654
No 215
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=84.26 E-value=22 Score=29.25 Aligned_cols=137 Identities=13% Similarity=0.181 Sum_probs=91.4
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECC---------------EEEEEeCChHHHHHH----HHHhcC--
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN---------------YGFVHMENDEEGRTA----IKELNG-- 91 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~---------------~~fV~f~~~~~a~~a----~~~l~~-- 91 (207)
--++.|...|+..+++...+..-|-.||+|.+|.+..+ ...+.|-+.+.|-.. ++.|..
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 44688999999999999999999999999999999833 479999999998753 344443
Q ss_pred CeeCCeeeEEEEcccC--------CC-----------------CCCCCceeeecCCCCCC-ChhHHHHhc---ccCC---
Q psy3721 92 QIVNEKPLKIEAATSR--------KG-----------------PNTPTTKVFVGNLSDNT-RAPEVRELF---VPYG--- 139 (207)
Q Consensus 92 ~~~~g~~i~v~~~~~~--------~~-----------------~~~~~~~l~v~nl~~~~-t~~~l~~~f---~~~g--- 139 (207)
..++...|.+.+..-. .. ...+.+.|.|. +...+ .++-+.+.+ ..-+
T Consensus 93 ~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~R 171 (309)
T PF10567_consen 93 TKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKR 171 (309)
T ss_pred HhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCce
Confidence 3456666766655420 00 11234555554 22334 222222222 2212
Q ss_pred -cEEEEEEe----------cCEEEEEEcc-HhHHHHHHHhCCc
Q psy3721 140 -TVVECDIV----------RNYGFVHIDS-PDINKCIKELNGM 170 (207)
Q Consensus 140 -~i~~~~~~----------~~~afv~f~~-e~a~~A~~~l~g~ 170 (207)
.++++.++ +.||.+.|-+ .-|...+..|.-.
T Consensus 172 YVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 172 YVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred EEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 47777776 5699999999 9999888776633
No 216
>KOG2891|consensus
Probab=80.32 E-value=1.1 Score=36.25 Aligned_cols=122 Identities=21% Similarity=0.416 Sum_probs=72.2
Q ss_pred EEEEE-CCEEEEEeC----ChHHHHHHHHHhcCCee--CC--eeeEEEEc-------ccCC--------------CCCCC
Q psy3721 64 ECDVV-KNYGFVHME----NDEEGRTAIKELNGQIV--NE--KPLKIEAA-------TSRK--------------GPNTP 113 (207)
Q Consensus 64 ~i~~~-~~~~fV~f~----~~~~a~~a~~~l~~~~~--~g--~~i~v~~~-------~~~~--------------~~~~~ 113 (207)
++++. ...-||-|. +....++.+..|+|..+ .| -.++|... .... .+...
T Consensus 69 sckiresnid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpger 148 (445)
T KOG2891|consen 69 SCKIRESNIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGER 148 (445)
T ss_pred ceeecccccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCC
Confidence 34444 235567665 44556677778888765 22 22333322 1111 12334
Q ss_pred CceeeecCCCC------------CCChhHHHHhcccCCcEEEEEEe------------------cCE---------EEEE
Q psy3721 114 TTKVFVGNLSD------------NTRAPEVRELFVPYGTVVECDIV------------------RNY---------GFVH 154 (207)
Q Consensus 114 ~~~l~v~nl~~------------~~t~~~l~~~f~~~g~i~~~~~~------------------~~~---------afv~ 154 (207)
..+||+.+||- -.+++.|+..|+.||.|..+.++ +|| |+|+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 56788877763 25678899999999999988886 222 4466
Q ss_pred Ecc-HhHHHHHHHhCCcee----CC----eeEEEEeccCc
Q psy3721 155 IDS-PDINKCIKELNGMMV----DG----KPMKVQISTSR 185 (207)
Q Consensus 155 f~~-e~a~~A~~~l~g~~~----~g----~~i~v~~~~~~ 185 (207)
|-. .--..|+..|.|..+ .| -.++|.|.+++
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 655 555667777776653 22 35666666543
No 217
>KOG4410|consensus
Probab=75.83 E-value=5.3 Score=32.58 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=37.9
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCce-EEEEEE--CCEEEEEeCChH
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKV-VECDVV--KNYGFVHMENDE 80 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i-~~i~~~--~~~~fV~f~~~~ 80 (207)
...+-||++|||.+.-..||+..+.+.|.+ .++... .+-||+.|-+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 345779999999999999999999887654 455444 678999998763
No 218
>KOG4019|consensus
Probab=74.96 E-value=1.7 Score=32.96 Aligned_cols=56 Identities=13% Similarity=0.234 Sum_probs=41.9
Q ss_pred HHHhcccCCcEEEEEEecCE--EEEEEcc-HhHHHHHHHhCCceeCCe-eEEEEeccCcc
Q psy3721 131 VRELFVPYGTVVECDIVRNY--GFVHIDS-PDINKCIKELNGMMVDGK-PMKVQISTSRV 186 (207)
Q Consensus 131 l~~~f~~~g~i~~~~~~~~~--afv~f~~-e~a~~A~~~l~g~~~~g~-~i~v~~~~~~~ 186 (207)
-..+|..|.....+++.|++ ..|-|.+ +.|..|...+++..|.|+ .++..++-+..
T Consensus 32 ~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~ 91 (193)
T KOG4019|consen 32 FENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGH 91 (193)
T ss_pred HHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCC
Confidence 34556666665555665554 5566999 999999999999999998 88888887653
No 219
>KOG2318|consensus
Probab=68.68 E-value=29 Score=31.24 Aligned_cols=72 Identities=15% Similarity=0.283 Sum_probs=58.2
Q ss_pred CCCcccEEEcCCCCC-CCHHHHHHHhhcC----CceEEEEEE----------------C---------------------
Q psy3721 32 SVGTFKIFIGNVNPG-TSVELIRPLFEKY----GKVVECDVV----------------K--------------------- 69 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~-~t~~~l~~~f~~~----g~i~~i~~~----------------~--------------------- 69 (207)
...+++|-|-|+.+. +...+|.-+|..| |.|.+|.|. .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456889999999987 8889999888765 468888875 0
Q ss_pred ----------------C--EEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 70 ----------------N--YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 70 ----------------~--~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
+ ||.|+|.+.+.|.......+|..|......+..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 0 799999999999999999999999665554443
No 220
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=61.21 E-value=19 Score=29.73 Aligned_cols=55 Identities=16% Similarity=0.290 Sum_probs=35.6
Q ss_pred EEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCCCCCCCceeeecCCCCCCChhHHHHhc
Q psy3721 72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135 (207)
Q Consensus 72 ~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 135 (207)
|||+|++.++|..+.+.+....- +.+.+..+..+. .|.=.||..+..+..+|..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP~-------DI~W~NL~~~~~~r~~R~~~ 55 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEPD-------DIIWENLSISSKQRFLRRII 55 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCcc-------cccccccCCChHHHHHHHHH
Confidence 79999999999999985554443 444666555433 34556665555555555443
No 221
>KOG2295|consensus
Probab=60.32 E-value=2.2 Score=37.78 Aligned_cols=64 Identities=17% Similarity=0.194 Sum_probs=51.2
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCC
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNE 96 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g 96 (207)
..+|+|++.|++|+.+.++|..++..+.-...+.+. ..+++|+|.-.-....|+-.|++..+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 567899999999999999999999988666666555 2468899987777777777778877644
No 222
>KOG2891|consensus
Probab=60.01 E-value=8.8 Score=31.25 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=27.5
Q ss_pred ccEEEcCCCCC------------CCHHHHHHHhhcCCceEEEEEE
Q psy3721 36 FKIFIGNVNPG------------TSVELIRPLFEKYGKVVECDVV 68 (207)
Q Consensus 36 ~~l~V~~lp~~------------~t~~~l~~~f~~~g~i~~i~~~ 68 (207)
-+|++.+||-. .+++-|+..|..||.|..+.++
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 48888888853 3678899999999999988876
No 223
>KOG1295|consensus
Probab=58.90 E-value=15 Score=31.26 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=47.3
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCc-eEEEEEE----------CCEEEEEeCChHHHHHHHHHhcCCee
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGK-VVECDVV----------KNYGFVHMENDEEGRTAIKELNGQIV 94 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~-i~~i~~~----------~~~~fV~f~~~~~a~~a~~~l~~~~~ 94 (207)
....+.|.|.+||+..++.++.+-...+-. +.-.... .+.++|.|.++++.......++|..|
T Consensus 4 ~~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 4 KEAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 345678999999999999999887766432 2111111 24689999999999999988888876
No 224
>KOG4019|consensus
Probab=55.58 E-value=20 Score=27.36 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=48.7
Q ss_pred ccEEEcCCCCCC--C---HHHHHHHhhcCCceEEEEEECC--EEEEEeCChHHHHHHHHHhcCCeeCCe-eeEEEEcccC
Q psy3721 36 FKIFIGNVNPGT--S---VELIRPLFEKYGKVVECDVVKN--YGFVHMENDEEGRTAIKELNGQIVNEK-PLKIEAATSR 107 (207)
Q Consensus 36 ~~l~V~~lp~~~--t---~~~l~~~f~~~g~i~~i~~~~~--~~fV~f~~~~~a~~a~~~l~~~~~~g~-~i~v~~~~~~ 107 (207)
+++.+.+|+..+ + .....++|..|.+..-.++.++ .-.|.|.+++.|..|...++...|.|+ .++...+.+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 356666776542 1 2223445555555444444443 456899999999999999999999887 8888777654
Q ss_pred C
Q psy3721 108 K 108 (207)
Q Consensus 108 ~ 108 (207)
.
T Consensus 91 ~ 91 (193)
T KOG4019|consen 91 H 91 (193)
T ss_pred C
Confidence 3
No 225
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=55.29 E-value=24 Score=21.86 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=15.6
Q ss_pred HHHHHHhhcCCceEEEEEE
Q psy3721 50 ELIRPLFEKYGKVVECDVV 68 (207)
Q Consensus 50 ~~l~~~f~~~g~i~~i~~~ 68 (207)
.+|+++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999766553
No 226
>PF14893 PNMA: PNMA
Probab=54.68 E-value=14 Score=31.01 Aligned_cols=48 Identities=8% Similarity=0.082 Sum_probs=32.1
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhc-CCceEEEEEE---------CCEEEEEeCChH
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEK-YGKVVECDVV---------KNYGFVHMENDE 80 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~-~g~i~~i~~~---------~~~~fV~f~~~~ 80 (207)
+..+.|.|.+||.+|++++|.+.++. +-+.-...+. ...++|+|...-
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~ 73 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDV 73 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccccc
Confidence 56789999999999999999987653 2122222222 235777776543
No 227
>KOG4483|consensus
Probab=52.54 E-value=39 Score=29.11 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=46.9
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCce-EEEEEE-CCEEEEEeCChHHHHHHHH
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV-VECDVV-KNYGFVHMENDEEGRTAIK 87 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i-~~i~~~-~~~~fV~f~~~~~a~~a~~ 87 (207)
.+.+-.+.|-|.++|.....+||...|..|+.- -+|+.+ ...+|..|.+...|..|+.
T Consensus 386 ~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 386 RESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred CcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecceeEEeecchHHHHHHhh
Confidence 344567899999999998888889999988753 445444 6799999999999999985
No 228
>KOG4410|consensus
Probab=52.42 E-value=26 Score=28.73 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=34.3
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCc-EEEEEE--ecCEEEEEEcc
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGT-VVECDI--VRNYGFVHIDS 157 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~-i~~~~~--~~~~afv~f~~ 157 (207)
...|+++||+.++.-.+|+..+..-|. -.++.- +.+.||+.|.+
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~ 376 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGN 376 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCC
Confidence 357999999999999999999987763 233322 37789999965
No 229
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=49.53 E-value=10 Score=25.33 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=21.1
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHh
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLF 56 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f 56 (207)
..+.++|.|.|||....+++|++..
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 3577899999999999999988654
No 230
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=49.23 E-value=61 Score=20.99 Aligned_cols=51 Identities=6% Similarity=0.146 Sum_probs=37.5
Q ss_pred eeecCCCCCCChhHHHHhccc-CC-cEEEEEEe-----cCEEEEEEcc-HhHHHHHHHh
Q psy3721 117 VFVGNLSDNTRAPEVRELFVP-YG-TVVECDIV-----RNYGFVHIDS-PDINKCIKEL 167 (207)
Q Consensus 117 l~v~nl~~~~t~~~l~~~f~~-~g-~i~~~~~~-----~~~afv~f~~-e~a~~A~~~l 167 (207)
-|+-.++...+-.+|+..++. || .|..+... ...|+|++.. ..|......+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 344456778889999988865 56 57776665 2479999999 8888877654
No 231
>KOG4008|consensus
Probab=46.28 E-value=14 Score=29.41 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=33.8
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEe
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHM 76 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f 76 (207)
....++|+-|+|..+|++-|..+.+.+|-+..+....-++|++-
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~~e~gl~es 81 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYNDEFGLHES 81 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheecccchhhhhC
Confidence 45679999999999999999999999986655544444444443
No 232
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=44.91 E-value=1.1e+02 Score=21.80 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=47.3
Q ss_pred CChhHHHHhcccCC-cEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 126 TRAPEVRELFVPYG-TVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 126 ~t~~~l~~~f~~~g-~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
.+...+++.+..-| .++++....+...|+|.+ ++-.+|...|....-.+..|.+..+.
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 56678888888888 688888889999999999 88888888888777666677766665
No 233
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.31 E-value=1.4e+02 Score=27.20 Aligned_cols=95 Identities=13% Similarity=0.160 Sum_probs=66.4
Q ss_pred CHHHHHHHhhcCCceEEEEEEC-CEEEEEeCChHHHHHHHHHhc--CCee------CCeeeEEEEcccCCCCCCCCceee
Q psy3721 48 SVELIRPLFEKYGKVVECDVVK-NYGFVHMENDEEGRTAIKELN--GQIV------NEKPLKIEAATSRKGPNTPTTKVF 118 (207)
Q Consensus 48 t~~~l~~~f~~~g~i~~i~~~~-~~~fV~f~~~~~a~~a~~~l~--~~~~------~g~~i~v~~~~~~~~~~~~~~~l~ 118 (207)
-.++|.+.+..-+.+.++.+.. ||-++.+.....++.....+. +..+ .|+++.|+++.+.. ..-++
T Consensus 59 iA~~i~~~l~~~~~~~~veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNp-----tkplH 133 (577)
T COG0018 59 IAEEIAEKLDTDEIIEKVEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANP-----TGPLH 133 (577)
T ss_pred HHHHHHHhccccCcEeEEEEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCC-----CCCcc
Confidence 3455555666555677888775 777777776666665555444 2222 56889999887544 35699
Q ss_pred ecCCCCCCChhHHHHhcccCC-cEEEEEEe
Q psy3721 119 VGNLSDNTRAPEVRELFVPYG-TVVECDIV 147 (207)
Q Consensus 119 v~nl~~~~t~~~l~~~f~~~g-~i~~~~~~ 147 (207)
||.+-..+--+.|..+++..| .|.+.-.+
T Consensus 134 iGHlR~aiiGDsLaril~~~Gy~V~r~~yv 163 (577)
T COG0018 134 IGHLRNAIIGDSLARILEFLGYDVTRENYV 163 (577)
T ss_pred cchhhhhHHHHHHHHHHHHcCCCeeEEeeE
Confidence 999999999999999999888 56554444
No 234
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=43.99 E-value=78 Score=20.88 Aligned_cols=50 Identities=10% Similarity=0.252 Sum_probs=36.4
Q ss_pred eecCCCCCCChhHHHHhccc-CC-cEEEEEEe-----cCEEEEEEcc-HhHHHHHHHh
Q psy3721 118 FVGNLSDNTRAPEVRELFVP-YG-TVVECDIV-----RNYGFVHIDS-PDINKCIKEL 167 (207)
Q Consensus 118 ~v~nl~~~~t~~~l~~~f~~-~g-~i~~~~~~-----~~~afv~f~~-e~a~~A~~~l 167 (207)
|.-..+...+-.+|+..++. || .|..+... ...|+|++.. ..|......+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 34446677888888888865 66 57777665 2479999999 8888876653
No 235
>KOG4483|consensus
Probab=41.42 E-value=49 Score=28.52 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=43.1
Q ss_pred CceeeecCCCCCCChhHHHHhcccCC--cEEEEEEecCEEEEEEcc-HhHHHHHHH
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYG--TVVECDIVRNYGFVHIDS-PDINKCIKE 166 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g--~i~~~~~~~~~afv~f~~-e~a~~A~~~ 166 (207)
...|-|.++|...-.++|-..|+.|+ ...--.+...+++..|.+ ..|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecceeEEeecchHHHHHHhhc
Confidence 35788999999988899999999996 344444558899999999 888888776
No 236
>KOG4008|consensus
Probab=40.03 E-value=16 Score=29.10 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=28.4
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEEEe
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 147 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~ 147 (207)
..+||+-|+|..++++-|..+.+..|-+......
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 4689999999999999999999999865554444
No 237
>KOG2318|consensus
Probab=38.65 E-value=1.5e+02 Score=27.02 Aligned_cols=73 Identities=19% Similarity=0.361 Sum_probs=57.4
Q ss_pred CCceeeecCCCCC-CChhHHHHhcccC----CcEEEEEEe----------------c-----------------------
Q psy3721 113 PTTKVFVGNLSDN-TRAPEVRELFVPY----GTVVECDIV----------------R----------------------- 148 (207)
Q Consensus 113 ~~~~l~v~nl~~~-~t~~~l~~~f~~~----g~i~~~~~~----------------~----------------------- 148 (207)
++.+|-|-|+.++ +...+|..+|..| |.|.+|.+- +
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4678999999995 8889998887665 478888874 1
Q ss_pred ----------------CEEEEEEcc-HhHHHHHHHhCCceeCCe--eEEEEeccCc
Q psy3721 149 ----------------NYGFVHIDS-PDINKCIKELNGMMVDGK--PMKVQISTSR 185 (207)
Q Consensus 149 ----------------~~afv~f~~-e~a~~A~~~l~g~~~~g~--~i~v~~~~~~ 185 (207)
-||.|+|.+ +.|.......+|..+... .+-++|....
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 179999999 999999999999998765 5556666543
No 238
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=38.58 E-value=83 Score=20.05 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=36.4
Q ss_pred cEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCee
Q psy3721 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94 (207)
Q Consensus 37 ~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~ 94 (207)
.||+.++ .+.+ -+..||.|.-+.=...|+. -|.|.++++..++.+....+
T Consensus 5 iVyl~~~------k~~r-~L~kfG~i~Y~Skk~kYvv-lYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 5 IVYLYSL------KDAR-QLRKFGDIHYVSKKMKYVV-LYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred EEEEech------HhHH-hHhhcccEEEEECCccEEE-EEECHHHHHHHHHHHhcCCC
Confidence 4566655 2333 3578999987766677884 48899999999998887765
No 239
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=37.12 E-value=90 Score=25.78 Aligned_cols=72 Identities=10% Similarity=0.181 Sum_probs=55.0
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEecC---------------EEEEEEcc-HhHHHH----HHHhCC--c
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---------------YGFVHIDS-PDINKC----IKELNG--M 170 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~---------------~afv~f~~-e~a~~A----~~~l~g--~ 170 (207)
..+.|.+.|+..+++-...-..|-.||+|+++.++.+ ...+-|-+ +.+..- ++.|+. +
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999832 46777888 777654 233442 3
Q ss_pred eeCCeeEEEEeccC
Q psy3721 171 MVDGKPMKVQISTS 184 (207)
Q Consensus 171 ~~~g~~i~v~~~~~ 184 (207)
.+....+++.|..-
T Consensus 94 ~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 94 KLKSESLTLSFVSL 107 (309)
T ss_pred hcCCcceeEEEEEE
Confidence 37788888887763
No 240
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=35.00 E-value=98 Score=28.52 Aligned_cols=60 Identities=10% Similarity=0.163 Sum_probs=50.4
Q ss_pred CCCChhHHHHhcccCC-----cEEEEEEecCEEEEEEccHhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 124 DNTRAPEVRELFVPYG-----TVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 124 ~~~t~~~l~~~f~~~g-----~i~~~~~~~~~afv~f~~e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
..++...|......-+ .|-.|++...|.||+...+.|...+..|++..+.|+.+.+..++
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeCCceEEEcChhhHHHHHHHhccccccCCceEEEECC
Confidence 3688888887776555 35567888999999998888899999999999999999999875
No 241
>PRK02302 hypothetical protein; Provisional
Probab=34.41 E-value=1e+02 Score=20.64 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=37.4
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCee
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~ 94 (207)
..||+..+. +.+ -+..||.|.-+.=...|+ |-|.|.++++..++.+....+
T Consensus 10 lIVyl~~~k------~~r-~LrkfG~I~Y~Skk~kYv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 10 LIVYLYYNR------DAR-KLSKYGDIVYHSKRSRYL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred EEEEEeecH------hHH-HHhhcCcEEEEeccccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 456776552 333 347899998776667787 458999999999998887766
No 242
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=32.36 E-value=76 Score=22.27 Aligned_cols=43 Identities=9% Similarity=0.096 Sum_probs=23.5
Q ss_pred CChhHHHHhcccCCcEEEEEEe-----cCEEEEEEcc-HhHHHHHHHhC
Q psy3721 126 TRAPEVRELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELN 168 (207)
Q Consensus 126 ~t~~~l~~~f~~~g~i~~~~~~-----~~~afv~f~~-e~a~~A~~~l~ 168 (207)
.+.++|++.|+.|..++-..+. .+++.|+|.. -...+-+..|+
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~ 77 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLE 77 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHH
Confidence 4668999999999876533332 5689999988 54444443333
No 243
>PRK02886 hypothetical protein; Provisional
Probab=30.88 E-value=1.3e+02 Score=20.11 Aligned_cols=51 Identities=14% Similarity=0.228 Sum_probs=37.2
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCee
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~ 94 (207)
..||+..+. +.+ -+..||.|.-+.=...|+ |-+.|.++++..++.+....+
T Consensus 8 lIVyl~~~k------~~r-~LrkyG~I~Y~Skr~kYv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 8 IIVWLHSLK------QAK-QLRKFGNVHYVSKRLKYA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred EEEEEeecH------hHH-HHhhcCcEEEEeccccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 456776552 333 347899998776667787 458899999999998887765
No 244
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=30.35 E-value=86 Score=19.67 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=20.7
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCee
Q psy3721 70 NYGFVHMENDEEGRTAIKELNGQIV 94 (207)
Q Consensus 70 ~~~fV~f~~~~~a~~a~~~l~~~~~ 94 (207)
.+.+|.|.+..+|.+|-+.+....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 4789999999999999887766555
No 245
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=28.74 E-value=1.1e+02 Score=19.90 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=23.8
Q ss_pred ceEEEEEE---CCEEEEEeCChHHHHHHHHHhcCCee
Q psy3721 61 KVVECDVV---KNYGFVHMENDEEGRTAIKELNGQIV 94 (207)
Q Consensus 61 ~i~~i~~~---~~~~fV~f~~~~~a~~a~~~l~~~~~ 94 (207)
.|.++... +||-|||=.++.++..|+..+.+...
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 45666665 89999999999999999976655443
No 246
>KOG2295|consensus
Probab=28.51 E-value=18 Score=32.37 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=51.7
Q ss_pred ceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEE
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMK 178 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~ 178 (207)
+++++.|++++++-++|..++..+-.+.++.+. ..+++|.|+- -....|...||+..+....+.
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~s 304 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLS 304 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccccc
Confidence 579999999999999999999998777776665 3478899987 777778888888877655443
No 247
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=27.39 E-value=1.3e+02 Score=20.15 Aligned_cols=50 Identities=12% Similarity=0.030 Sum_probs=34.3
Q ss_pred ecCCCCCCChhHHHHhcccCCc-EEEEEEe----cCEEEEEEcc-HhHHHHHHHhC
Q psy3721 119 VGNLSDNTRAPEVRELFVPYGT-VVECDIV----RNYGFVHIDS-PDINKCIKELN 168 (207)
Q Consensus 119 v~nl~~~~t~~~l~~~f~~~g~-i~~~~~~----~~~afv~f~~-e~a~~A~~~l~ 168 (207)
|..+-+.++...|...|..-|. -+-..+. +.+|.|.|.+ +.+..|...|-
T Consensus 17 lYS~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 17 LYSQTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred EEecCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 4456667777888777776662 2222222 5689999999 99999887653
No 248
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=26.63 E-value=2e+02 Score=20.71 Aligned_cols=48 Identities=15% Similarity=0.301 Sum_probs=34.1
Q ss_pred EeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCCCCCCCceeeecCCCC
Q psy3721 75 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSD 124 (207)
Q Consensus 75 ~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~v~nl~~ 124 (207)
.+-+.. ...++..+.+..++|+.+.|..... ..+...+..|||++-..
T Consensus 32 v~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~~-~~~~~~C~ilyi~~~~~ 79 (145)
T PF13689_consen 32 VLGDDP-FAEALSTLAGKQVGGRPIRVRRLSS-PNEISGCHILYISSSES 79 (145)
T ss_pred EECChH-HHHHHHHhhhcccCCCcEEEEECCC-CcccccccEEEECCCCh
Confidence 333444 4467788889999999999987753 33346678899987664
No 249
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=22.70 E-value=2.6e+02 Score=22.65 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=22.6
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcE
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTV 141 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i 141 (207)
.....|+|||++++..=+..++...-.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 3467899999999999999888765443
No 250
>KOG0862|consensus
Probab=22.23 E-value=61 Score=25.43 Aligned_cols=29 Identities=24% Similarity=0.525 Sum_probs=20.1
Q ss_pred hHHHHhc-ccCCcEEEEEEecCEEEEEEcc
Q psy3721 129 PEVRELF-VPYGTVVECDIVRNYGFVHIDS 157 (207)
Q Consensus 129 ~~l~~~f-~~~g~i~~~~~~~~~afv~f~~ 157 (207)
++|.+.| ..||.-..-...|.|+||+|++
T Consensus 89 edL~~EF~~~~~~~~~~~~~RPY~FieFD~ 118 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKNIIQPASRPYAFIEFDT 118 (216)
T ss_pred HHHHHHHHHhcccccCCccCCCeeEEehhH
Confidence 5555555 6676544445669999999986
No 251
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=20.04 E-value=5.3e+02 Score=23.68 Aligned_cols=81 Identities=12% Similarity=0.174 Sum_probs=54.5
Q ss_pred EEEEEeCChHHHHHHHHHhcCCeeCCeeeEE---EEccc-----------C------CCCCCCCceeeecCCCCCCChhH
Q psy3721 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKI---EAATS-----------R------KGPNTPTTKVFVGNLSDNTRAPE 130 (207)
Q Consensus 71 ~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v---~~~~~-----------~------~~~~~~~~~l~v~nl~~~~t~~~ 130 (207)
-|++++.+++.-+--.+-|+...+.+..|.- .++.+ . ..+......+|+.+|.-+++++.
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dV 317 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDV 317 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHHH
Confidence 5899999998887777777777665544331 11111 0 11233567899999999999888
Q ss_pred HHHhcccCCcEEEEEEec-CEE
Q psy3721 131 VRELFVPYGTVVECDIVR-NYG 151 (207)
Q Consensus 131 l~~~f~~~g~i~~~~~~~-~~a 151 (207)
-.++....-.++.+.+.| +||
T Consensus 318 Q~~~irsipGlEna~i~rpgYA 339 (621)
T COG0445 318 QEQIIRSIPGLENAEILRPGYA 339 (621)
T ss_pred HHHHHHhCcccccceeecccee
Confidence 777777777778877763 444
Done!