Query psy3721
Match_columns 207
No_of_seqs 111 out of 1671
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 23:52:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2.7E-34 9.1E-39 224.1 17.8 155 32-186 12-182 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 4.5E-33 1.5E-37 207.6 19.5 149 36-184 1-166 (166)
3 1b7f_A Protein (SXL-lethal pro 100.0 1.6E-32 5.5E-37 205.3 19.9 148 34-182 2-168 (168)
4 2qfj_A FBP-interacting repress 100.0 1.5E-32 5.2E-37 213.5 19.0 157 34-190 27-210 (216)
5 1fxl_A Paraneoplastic encephal 100.0 2.3E-32 8E-37 203.9 18.9 148 34-182 1-167 (167)
6 1l3k_A Heterogeneous nuclear r 100.0 5.3E-32 1.8E-36 207.5 18.8 157 31-189 9-187 (196)
7 2adc_A Polypyrimidine tract-bi 100.0 5.4E-32 1.8E-36 213.2 19.0 158 28-185 27-228 (229)
8 3pgw_A U1-A; protein-RNA compl 100.0 9.9E-32 3.4E-36 217.4 20.8 154 30-183 4-281 (282)
9 2yh0_A Splicing factor U2AF 65 100.0 1E-31 3.5E-36 206.1 19.6 154 34-188 3-197 (198)
10 3nmr_A Cugbp ELAV-like family 100.0 8.7E-32 3E-36 202.4 18.6 150 34-183 2-175 (175)
11 2g4b_A Splicing factor U2AF 65 100.0 1.1E-31 3.9E-36 201.6 19.0 148 34-183 3-172 (172)
12 3tyt_A Heterogeneous nuclear r 100.0 1.4E-31 4.9E-36 207.6 17.0 149 34-182 3-204 (205)
13 1fje_B Nucleolin RBD12, protei 100.0 6.3E-32 2.1E-36 203.8 14.0 155 30-185 8-174 (175)
14 1qm9_A Polypyrimidine tract-bi 100.0 8.8E-32 3E-36 207.0 15.1 152 34-185 2-197 (198)
15 2cjk_A Nuclear polyadenylated 100.0 6.4E-32 2.2E-36 202.0 10.5 148 34-185 2-166 (167)
16 3smz_A Protein raver-1, ribonu 100.0 1.1E-29 3.9E-34 205.5 20.0 155 33-187 93-266 (284)
17 3smz_A Protein raver-1, ribonu 100.0 2.9E-29 1E-33 203.1 21.7 146 34-187 21-177 (284)
18 3sde_A Paraspeckle component 1 100.0 1.9E-29 6.6E-34 202.3 20.4 149 32-187 19-181 (261)
19 2ghp_A U4/U6 snRNA-associated 100.0 1.6E-29 5.4E-34 205.4 17.1 151 34-185 116-291 (292)
20 2ghp_A U4/U6 snRNA-associated 100.0 4.1E-29 1.4E-33 203.0 16.6 149 31-188 37-200 (292)
21 2i2y_A Fusion protein consists 99.9 1.6E-22 5.5E-27 149.0 9.9 117 69-186 13-149 (150)
22 4f25_A Polyadenylate-binding p 99.9 4E-22 1.4E-26 140.6 10.6 97 34-130 4-113 (115)
23 2kn4_A Immunoglobulin G-bindin 99.9 7.5E-22 2.6E-26 146.5 11.9 121 69-189 13-154 (158)
24 4fxv_A ELAV-like protein 1; RN 99.8 2.6E-19 8.9E-24 122.8 10.3 73 113-185 18-99 (99)
25 2dgt_A RNA-binding protein 30; 99.8 4.7E-19 1.6E-23 119.8 11.4 84 110-193 6-90 (92)
26 4fxv_A ELAV-like protein 1; RN 99.8 6.8E-19 2.3E-23 120.8 10.4 73 34-106 18-98 (99)
27 2dnq_A RNA-binding protein 4B; 99.8 1E-18 3.5E-23 117.6 11.1 81 111-191 5-86 (90)
28 3lqv_A PRE-mRNA branch site pr 99.8 3.4E-19 1.2E-23 125.3 7.3 99 33-140 6-109 (115)
29 2dnq_A RNA-binding protein 4B; 99.8 3.7E-18 1.3E-22 114.8 11.9 79 32-110 5-83 (90)
30 1wf1_A RNA-binding protein RAL 99.8 1.4E-18 4.9E-23 121.2 9.9 97 95-191 6-106 (110)
31 2dnp_A RNA-binding protein 14; 99.8 2.1E-18 7.3E-23 116.0 10.4 79 110-188 5-84 (90)
32 2cpd_A Apobec-1 stimulating pr 99.8 4.5E-18 1.5E-22 116.4 12.2 80 111-190 12-94 (99)
33 2dgt_A RNA-binding protein 30; 99.8 4.5E-18 1.5E-22 114.9 11.9 81 30-110 5-85 (92)
34 2dnp_A RNA-binding protein 14; 99.8 4.1E-18 1.4E-22 114.6 11.6 81 31-111 5-85 (90)
35 1wex_A Hypothetical protein (r 99.8 3.6E-18 1.2E-22 118.1 11.1 84 110-193 11-99 (104)
36 2dgu_A Heterogeneous nuclear r 99.8 5.7E-18 1.9E-22 116.8 12.0 81 111-191 8-89 (103)
37 4f25_A Polyadenylate-binding p 99.8 2.3E-18 8E-23 121.2 10.2 77 113-189 4-87 (115)
38 2cq1_A PTB-like protein L; RRM 99.8 9.9E-18 3.4E-22 115.3 13.0 80 110-189 11-95 (101)
39 2dgx_A KIAA0430 protein; RRM d 99.8 3.4E-18 1.2E-22 116.5 10.4 80 111-190 6-95 (96)
40 2hvz_A Splicing factor, argini 99.8 1.4E-18 4.8E-23 119.3 8.3 89 36-124 1-101 (101)
41 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.5E-18 8.5E-23 128.5 10.3 116 74-189 11-156 (165)
42 2dnz_A Probable RNA-binding pr 99.8 6.6E-18 2.3E-22 114.6 11.4 81 112-192 3-92 (95)
43 2cq0_A Eukaryotic translation 99.8 7.9E-18 2.7E-22 116.0 11.9 82 110-191 11-101 (103)
44 2kvi_A Nuclear polyadenylated 99.8 1.4E-18 4.9E-23 118.3 7.9 81 111-191 7-89 (96)
45 2cq3_A RNA-binding protein 9; 99.8 1.5E-17 5.1E-22 114.6 13.1 82 110-191 11-99 (103)
46 1x4a_A Splicing factor, argini 99.8 8.6E-18 2.9E-22 117.0 11.9 83 110-192 18-106 (109)
47 2lea_A Serine/arginine-rich sp 99.8 3.1E-19 1.1E-23 129.2 4.7 117 71-189 6-131 (135)
48 3r27_A HnRNP L, heterogeneous 99.8 3.9E-18 1.3E-22 116.6 9.8 76 110-185 17-97 (100)
49 2wbr_A GW182, gawky, LD47780P; 99.8 3.9E-18 1.3E-22 113.1 9.4 72 113-184 6-80 (89)
50 2xnq_A Nuclear polyadenylated 99.8 6.3E-18 2.2E-22 115.4 10.6 77 110-186 18-96 (97)
51 1sjq_A Polypyrimidine tract-bi 99.8 4.4E-18 1.5E-22 117.4 9.8 80 31-110 12-95 (105)
52 2cpd_A Apobec-1 stimulating pr 99.8 1.9E-17 6.4E-22 113.3 12.8 79 32-110 12-92 (99)
53 2d9p_A Polyadenylate-binding p 99.8 1.1E-17 3.7E-22 115.3 11.7 82 110-191 11-99 (103)
54 1sjq_A Polypyrimidine tract-bi 99.8 2.9E-18 9.9E-23 118.3 8.7 78 111-188 13-95 (105)
55 1x4d_A Matrin 3; structural ge 99.8 4E-18 1.4E-22 117.3 9.3 78 110-187 11-94 (102)
56 2dgo_A Cytotoxic granule-assoc 99.8 2E-17 6.8E-22 116.2 13.0 82 109-190 10-100 (115)
57 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.6E-17 5.4E-22 114.5 11.9 82 110-191 11-99 (103)
58 2xnq_A Nuclear polyadenylated 99.7 1.3E-17 4.6E-22 113.8 11.2 77 31-107 18-95 (97)
59 3r27_A HnRNP L, heterogeneous 99.7 1.2E-17 4E-22 114.2 10.7 75 33-107 19-97 (100)
60 1x4d_A Matrin 3; structural ge 99.7 7.4E-18 2.5E-22 116.0 9.8 79 31-109 11-94 (102)
61 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.9E-17 9.8E-22 113.1 12.8 80 30-109 10-95 (103)
62 2wbr_A GW182, gawky, LD47780P; 99.7 1E-17 3.6E-22 111.0 9.9 73 33-105 5-79 (89)
63 2cq3_A RNA-binding protein 9; 99.7 4.8E-17 1.6E-21 112.0 13.7 81 30-110 10-96 (103)
64 2dgu_A Heterogeneous nuclear r 99.7 1.8E-17 6.2E-22 114.2 11.5 77 33-109 9-85 (103)
65 3s8s_A Histone-lysine N-methyl 99.7 1.3E-17 4.4E-22 116.5 10.7 75 112-186 4-87 (110)
66 2jvo_A Nucleolar protein 3; nu 99.7 7.3E-18 2.5E-22 117.4 9.4 79 110-188 27-106 (108)
67 2dnm_A SRP46 splicing factor; 99.7 1.3E-17 4.6E-22 114.8 10.6 82 110-191 9-99 (103)
68 2cq1_A PTB-like protein L; RRM 99.7 3.4E-17 1.2E-21 112.6 12.4 79 31-109 11-93 (101)
69 2kvi_A Nuclear polyadenylated 99.7 7.8E-18 2.7E-22 114.7 9.2 78 32-109 7-85 (96)
70 2cpj_A Non-POU domain-containi 99.7 1.7E-17 5.9E-22 113.5 10.9 81 109-189 10-93 (99)
71 1x5u_A Splicing factor 3B subu 99.7 1.5E-17 5.2E-22 114.9 10.6 83 109-191 10-101 (105)
72 1x5t_A Splicing factor 3B subu 99.7 6.1E-18 2.1E-22 115.0 8.5 82 112-193 3-94 (96)
73 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.1E-17 3.8E-22 114.9 9.8 82 110-191 8-98 (102)
74 2dgo_A Cytotoxic granule-assoc 99.7 4.3E-17 1.5E-21 114.5 12.9 83 28-110 8-98 (115)
75 2d9p_A Polyadenylate-binding p 99.7 3.2E-17 1.1E-21 112.9 12.0 81 30-110 10-96 (103)
76 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.2E-17 4.2E-22 111.4 9.6 74 112-185 4-86 (87)
77 2dnh_A Bruno-like 5, RNA bindi 99.7 2.4E-17 8.1E-22 113.9 11.4 81 111-191 12-103 (105)
78 2dgs_A DAZ-associated protein 99.7 3.2E-17 1.1E-21 112.1 11.8 81 110-191 6-95 (99)
79 2cpf_A RNA binding motif prote 99.7 2E-17 7E-22 112.8 10.8 80 112-191 3-94 (98)
80 2e5h_A Zinc finger CCHC-type a 99.7 2.8E-17 9.4E-22 111.3 11.3 80 26-105 7-94 (94)
81 2cq0_A Eukaryotic translation 99.7 2.9E-17 1E-21 113.1 11.5 83 28-110 8-98 (103)
82 1whw_A Hypothetical protein ri 99.7 2.6E-17 9E-22 112.5 11.1 79 111-189 5-92 (99)
83 3md1_A Nuclear and cytoplasmic 99.7 2.4E-17 8.2E-22 108.9 10.6 74 35-108 1-82 (83)
84 2do0_A HnRNP M, heterogeneous 99.7 6.6E-17 2.3E-21 113.3 13.4 79 110-188 11-97 (114)
85 2cpz_A CUG triplet repeat RNA- 99.7 1.7E-17 5.7E-22 116.6 10.3 82 110-191 21-111 (115)
86 1wex_A Hypothetical protein (r 99.7 3.3E-17 1.1E-21 113.3 11.6 78 32-109 12-93 (104)
87 1x4c_A Splicing factor, argini 99.7 3.7E-17 1.3E-21 113.7 11.9 78 112-189 13-97 (108)
88 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.8E-17 9.6E-22 109.1 10.7 74 32-105 4-85 (85)
89 1why_A Hypothetical protein ri 99.7 1.7E-17 5.8E-22 113.1 9.8 77 111-187 14-95 (97)
90 1x4g_A Nucleolysin TIAR; struc 99.7 2.3E-17 7.9E-22 114.9 10.6 80 111-190 22-104 (109)
91 3s8s_A Histone-lysine N-methyl 99.7 2.3E-17 8E-22 115.2 10.7 75 33-107 4-86 (110)
92 1why_A Hypothetical protein ri 99.7 4.3E-17 1.5E-21 111.1 11.8 78 31-108 13-94 (97)
93 4a8x_A RNA-binding protein wit 99.7 3.6E-17 1.2E-21 109.2 11.2 75 34-108 3-86 (88)
94 2do4_A Squamous cell carcinoma 99.7 3.7E-17 1.2E-21 112.0 11.4 79 110-188 13-99 (100)
95 2cpz_A CUG triplet repeat RNA- 99.7 3.2E-17 1.1E-21 115.2 11.4 81 31-111 21-109 (115)
96 2dgv_A HnRNP M, heterogeneous 99.7 1.9E-17 6.6E-22 111.6 9.7 79 111-189 5-90 (92)
97 2dgx_A KIAA0430 protein; RRM d 99.7 3.2E-17 1.1E-21 111.6 10.9 77 33-109 7-92 (96)
98 1x5u_A Splicing factor 3B subu 99.7 4.1E-17 1.4E-21 112.7 11.6 82 28-109 8-97 (105)
99 1x4a_A Splicing factor, argini 99.7 7E-17 2.4E-21 112.4 12.8 81 30-110 17-102 (109)
100 1whw_A Hypothetical protein ri 99.7 3.7E-17 1.3E-21 111.7 11.2 79 32-110 5-91 (99)
101 4a8x_A RNA-binding protein wit 99.7 3.3E-17 1.1E-21 109.4 10.6 74 113-186 3-86 (88)
102 2cpj_A Non-POU domain-containi 99.7 4.9E-17 1.7E-21 111.2 11.8 78 32-109 12-91 (99)
103 2jvo_A Nucleolar protein 3; nu 99.7 2.4E-17 8.2E-22 114.7 10.2 78 32-109 28-105 (108)
104 2err_A Ataxin-2-binding protei 99.7 2.3E-17 8E-22 114.9 10.1 84 24-107 18-107 (109)
105 2ad9_A Polypyrimidine tract-bi 99.7 1.5E-17 5.1E-22 117.4 9.2 80 110-189 27-111 (119)
106 1x5s_A Cold-inducible RNA-bind 99.7 1.6E-17 5.6E-22 114.1 9.2 82 110-191 8-98 (102)
107 2do4_A Squamous cell carcinoma 99.7 5.2E-17 1.8E-21 111.2 11.7 79 30-108 12-97 (100)
108 2dnz_A Probable RNA-binding pr 99.7 6.1E-17 2.1E-21 109.8 11.9 78 33-110 3-88 (95)
109 3md1_A Nuclear and cytoplasmic 99.7 3.2E-17 1.1E-21 108.3 10.2 72 115-186 2-82 (83)
110 2cqc_A Arginine/serine-rich sp 99.7 4.1E-17 1.4E-21 110.5 10.9 78 29-106 9-94 (95)
111 2ad9_A Polypyrimidine tract-bi 99.7 4.8E-17 1.7E-21 114.8 11.5 79 31-109 27-109 (119)
112 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.3E-17 1.1E-21 108.8 10.1 73 111-183 4-85 (85)
113 2dnm_A SRP46 splicing factor; 99.7 4.2E-17 1.5E-21 112.3 11.0 81 29-109 7-95 (103)
114 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.9E-17 9.8E-22 109.5 9.8 75 33-107 4-86 (87)
115 2lxi_A RNA-binding protein 10; 99.7 2.9E-18 1E-22 115.7 4.9 74 114-187 1-85 (91)
116 2dgs_A DAZ-associated protein 99.7 8.6E-17 2.9E-21 109.9 12.3 79 31-110 6-92 (99)
117 1x4h_A RNA-binding protein 28; 99.7 5.3E-17 1.8E-21 113.2 11.4 81 110-190 11-106 (111)
118 1wf1_A RNA-binding protein RAL 99.7 5.9E-17 2E-21 112.9 11.7 77 33-109 25-102 (110)
119 2ytc_A PRE-mRNA-splicing facto 99.7 5.4E-17 1.8E-21 107.8 10.9 75 31-105 8-85 (85)
120 2x1f_A MRNA 3'-END-processing 99.7 3.5E-17 1.2E-21 111.3 9.9 75 113-187 1-84 (96)
121 2cqc_A Arginine/serine-rich sp 99.7 4.2E-17 1.4E-21 110.5 10.3 76 109-184 10-94 (95)
122 1oo0_B CG8781-PA, drosophila Y 99.7 3.4E-17 1.2E-21 114.1 10.0 78 111-188 23-109 (110)
123 2cph_A RNA binding motif prote 99.7 5.7E-17 1.9E-21 112.3 11.0 82 110-191 11-103 (107)
124 2cpi_A CCR4-NOT transcription 99.7 2.6E-17 9.1E-22 115.0 9.3 86 23-108 3-102 (111)
125 2dnh_A Bruno-like 5, RNA bindi 99.7 1E-16 3.4E-21 110.7 12.2 79 32-110 12-100 (105)
126 2ytc_A PRE-mRNA-splicing facto 99.7 4.2E-17 1.4E-21 108.3 9.9 74 110-183 8-85 (85)
127 1p27_B RNA-binding protein 8A; 99.7 4.9E-17 1.7E-21 112.5 10.6 78 31-108 19-104 (106)
128 1wi8_A EIF-4B, eukaryotic tran 99.7 6.2E-17 2.1E-21 111.7 10.9 79 110-190 11-99 (104)
129 2ywk_A Putative RNA-binding pr 99.7 4E-17 1.4E-21 110.7 9.8 77 30-106 11-94 (95)
130 2dng_A Eukaryotic translation 99.7 8.2E-17 2.8E-21 110.9 11.5 79 110-190 11-98 (103)
131 1u6f_A Tcubp1, RNA-binding pro 99.7 7E-17 2.4E-21 117.1 11.6 83 111-193 39-130 (139)
132 2cqh_A IGF-II mRNA-binding pro 99.7 2E-17 7E-22 111.8 8.2 79 111-189 5-87 (93)
133 1x4c_A Splicing factor, argini 99.7 1E-16 3.4E-21 111.5 11.9 77 33-109 13-95 (108)
134 2cpf_A RNA binding motif prote 99.7 7.9E-17 2.7E-21 109.9 11.1 78 33-110 3-91 (98)
135 2x1f_A MRNA 3'-END-processing 99.7 5.8E-17 2E-21 110.2 10.4 75 34-108 1-83 (96)
136 2fy1_A RNA-binding motif prote 99.7 4.4E-17 1.5E-21 114.8 10.0 78 112-189 5-90 (116)
137 1x4f_A Matrin 3; structural ge 99.7 2.6E-17 8.8E-22 115.0 8.6 79 111-189 22-106 (112)
138 2dhg_A TRNA selenocysteine ass 99.7 3.1E-17 1.1E-21 113.1 8.9 82 110-191 5-96 (104)
139 1p27_B RNA-binding protein 8A; 99.7 4.1E-17 1.4E-21 112.9 9.5 77 111-187 20-105 (106)
140 1x4g_A Nucleolysin TIAR; struc 99.7 8.9E-17 3E-21 111.9 11.2 78 32-109 22-101 (109)
141 2la6_A RNA-binding protein FUS 99.7 6.7E-17 2.3E-21 110.5 10.4 78 28-105 6-99 (99)
142 2jrs_A RNA-binding protein 39; 99.7 7.9E-17 2.7E-21 112.1 10.8 77 32-108 23-107 (108)
143 2lxi_A RNA-binding protein 10; 99.7 7.7E-18 2.6E-22 113.7 5.5 75 35-109 1-85 (91)
144 2e5h_A Zinc finger CCHC-type a 99.7 8.4E-17 2.9E-21 108.8 10.7 74 110-183 12-94 (94)
145 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.9E-17 2E-21 111.3 10.0 79 32-110 9-95 (102)
146 2cqd_A RNA-binding region cont 99.7 1.3E-16 4.3E-21 112.3 11.8 79 110-189 13-100 (116)
147 2cqh_A IGF-II mRNA-binding pro 99.7 5.9E-17 2E-21 109.5 9.7 78 32-109 5-85 (93)
148 2dgv_A HnRNP M, heterogeneous 99.7 7.7E-17 2.6E-21 108.6 10.2 77 33-109 6-88 (92)
149 1x5s_A Cold-inducible RNA-bind 99.7 6.7E-17 2.3E-21 111.0 10.0 79 32-110 9-95 (102)
150 1x5t_A Splicing factor 3B subu 99.7 5.4E-17 1.9E-21 110.2 9.4 78 33-110 3-89 (96)
151 2cpi_A CCR4-NOT transcription 99.7 9.9E-17 3.4E-21 112.1 10.9 76 112-187 13-103 (111)
152 2jrs_A RNA-binding protein 39; 99.7 6.9E-17 2.4E-21 112.4 10.0 77 110-186 22-107 (108)
153 2dgp_A Bruno-like 4, RNA bindi 99.7 4.8E-17 1.6E-21 112.5 9.1 82 109-190 8-101 (106)
154 2jvr_A Nucleolar protein 3; RN 99.7 2E-17 7E-22 115.6 7.2 75 112-186 26-106 (111)
155 2cpe_A RNA-binding protein EWS 99.7 9.5E-17 3.2E-21 112.4 10.7 83 27-109 7-105 (113)
156 1x5p_A Negative elongation fac 99.7 2.3E-16 8E-21 107.4 12.3 79 110-190 11-92 (97)
157 1u6f_A Tcubp1, RNA-binding pro 99.7 7.3E-17 2.5E-21 117.0 10.3 81 30-110 37-125 (139)
158 2err_A Ataxin-2-binding protei 99.7 5.9E-17 2E-21 112.9 9.3 76 110-185 25-107 (109)
159 2la4_A Nuclear and cytoplasmic 99.7 3E-17 1E-21 112.6 7.6 74 112-185 25-101 (101)
160 2cpe_A RNA-binding protein EWS 99.7 9.1E-17 3.1E-21 112.4 10.2 80 110-189 11-107 (113)
161 2la4_A Nuclear and cytoplasmic 99.7 4.5E-17 1.5E-21 111.7 8.5 75 32-106 24-100 (101)
162 2lkz_A RNA-binding protein 5; 99.7 2.4E-17 8.1E-22 112.1 6.8 73 112-184 7-94 (95)
163 2jvr_A Nucleolar protein 3; RN 99.7 3.7E-17 1.3E-21 114.3 7.9 76 32-107 25-105 (111)
164 1x4h_A RNA-binding protein 28; 99.7 2.2E-16 7.6E-21 110.0 12.0 80 31-110 11-104 (111)
165 1oo0_B CG8781-PA, drosophila Y 99.7 1.4E-16 4.6E-21 111.0 10.8 78 31-108 22-107 (110)
166 2cph_A RNA binding motif prote 99.7 2.5E-16 8.7E-21 109.0 12.1 80 30-109 10-99 (107)
167 3ex7_B RNA-binding protein 8A; 99.7 6.9E-17 2.4E-21 115.2 9.4 82 110-191 18-108 (126)
168 1nu4_A U1A RNA binding domain; 99.7 9.7E-17 3.3E-21 109.2 9.7 76 111-186 5-90 (97)
169 2ywk_A Putative RNA-binding pr 99.7 1E-16 3.4E-21 108.7 9.7 75 110-184 12-94 (95)
170 1nu4_A U1A RNA binding domain; 99.7 1.3E-16 4.5E-21 108.5 10.2 77 32-108 5-90 (97)
171 2lkz_A RNA-binding protein 5; 99.7 6.3E-17 2.1E-21 110.0 8.5 76 31-106 5-94 (95)
172 1whx_A Hypothetical protein ri 99.7 5.4E-17 1.9E-21 113.5 8.4 75 33-107 8-84 (111)
173 2fc9_A NCL protein; structure 99.7 1.5E-16 5.1E-21 109.1 10.4 81 110-190 11-96 (101)
174 3p5t_L Cleavage and polyadenyl 99.7 9.2E-18 3.2E-22 112.9 4.2 75 115-189 2-87 (90)
175 2cqd_A RNA-binding region cont 99.7 2.2E-16 7.6E-21 111.0 11.5 81 29-110 11-99 (116)
176 2fy1_A RNA-binding motif prote 99.7 1.7E-16 5.7E-21 111.9 10.8 78 32-109 4-88 (116)
177 1x4f_A Matrin 3; structural ge 99.7 8.5E-17 2.9E-21 112.3 9.0 78 32-109 22-104 (112)
178 2fc8_A NCL protein; structure 99.7 2E-16 7E-21 108.6 10.8 82 110-191 11-98 (102)
179 2dh8_A DAZ-associated protein 99.7 1.2E-16 4.2E-21 110.3 9.7 80 110-190 12-100 (105)
180 1wi8_A EIF-4B, eukaryotic tran 99.7 3E-16 1E-20 108.2 11.6 77 32-110 12-97 (104)
181 2kxn_B Transformer-2 protein h 99.7 9.7E-17 3.3E-21 115.2 9.4 77 110-186 42-127 (129)
182 2kxn_B Transformer-2 protein h 99.7 1.2E-16 4.1E-21 114.7 9.9 79 30-108 41-127 (129)
183 2a3j_A U1 small nuclear ribonu 99.7 1.1E-16 3.9E-21 114.4 9.7 77 32-108 26-111 (127)
184 2dgp_A Bruno-like 4, RNA bindi 99.7 1.6E-16 5.5E-21 109.9 10.2 81 29-109 7-98 (106)
185 3ucg_A Polyadenylate-binding p 99.7 1.4E-16 4.6E-21 106.7 9.5 72 114-186 6-86 (89)
186 2div_A TRNA selenocysteine ass 99.7 1.1E-16 3.8E-21 109.3 9.2 78 32-109 6-96 (99)
187 2khc_A Testis-specific RNP-typ 99.7 1.5E-16 5E-21 112.2 10.0 74 110-183 36-118 (118)
188 2dh8_A DAZ-associated protein 99.7 1.1E-16 3.7E-21 110.6 9.1 83 27-110 8-98 (105)
189 2e5j_A Methenyltetrahydrofolat 99.7 1.4E-16 4.8E-21 108.5 9.5 77 31-108 15-95 (97)
190 3p5t_L Cleavage and polyadenyl 99.7 2.1E-17 7.3E-22 111.1 5.3 75 36-110 2-86 (90)
191 3ulh_A THO complex subunit 4; 99.7 2.2E-16 7.6E-21 109.3 10.6 74 32-105 26-106 (107)
192 2cpx_A Hypothetical protein FL 99.7 5.7E-17 1.9E-21 113.8 7.7 82 110-191 21-111 (115)
193 2khc_A Testis-specific RNP-typ 99.7 1.6E-16 5.6E-21 112.0 10.1 74 32-105 37-118 (118)
194 2m2b_A RNA-binding protein 10; 99.7 6E-17 2E-21 116.5 7.9 96 111-206 20-129 (131)
195 2div_A TRNA selenocysteine ass 99.7 9.5E-17 3.2E-21 109.7 8.5 78 110-187 5-96 (99)
196 3ulh_A THO complex subunit 4; 99.7 2.2E-16 7.4E-21 109.4 10.5 75 110-184 25-107 (107)
197 1whx_A Hypothetical protein ri 99.7 1.1E-16 3.7E-21 112.0 8.9 74 113-186 9-85 (111)
198 2e5j_A Methenyltetrahydrofolat 99.7 8E-17 2.7E-21 109.8 8.1 77 110-187 15-96 (97)
199 2la6_A RNA-binding protein FUS 99.7 1.5E-16 5.2E-21 108.7 9.4 74 110-183 9-99 (99)
200 2dis_A Unnamed protein product 99.7 1.5E-16 5.3E-21 110.5 9.4 79 111-189 5-96 (109)
201 3lqv_A PRE-mRNA branch site pr 99.7 1.1E-16 3.9E-21 112.3 8.7 77 111-187 5-87 (115)
202 2kt5_A RNA and export factor-b 99.7 3.3E-16 1.1E-20 111.4 11.1 79 31-109 31-116 (124)
203 2dng_A Eukaryotic translation 99.7 5.1E-16 1.7E-20 106.8 11.7 77 32-110 12-96 (103)
204 2a3j_A U1 small nuclear ribonu 99.7 1.1E-16 3.6E-21 114.6 8.5 77 110-186 25-111 (127)
205 2do0_A HnRNP M, heterogeneous 99.7 5.5E-16 1.9E-20 108.5 12.0 76 32-107 12-94 (114)
206 1h2v_Z 20 kDa nuclear CAP bind 99.7 3E-16 1E-20 116.0 11.2 78 112-189 37-123 (156)
207 1s79_A Lupus LA protein; RRM, 99.7 1.7E-16 5.7E-21 109.5 8.9 74 32-106 8-88 (103)
208 2cq2_A Hypothetical protein LO 99.7 1.3E-16 4.3E-21 111.6 8.3 80 111-190 22-111 (114)
209 2hvz_A Splicing factor, argini 99.7 8.1E-17 2.8E-21 110.5 7.1 75 115-189 1-79 (101)
210 3ucg_A Polyadenylate-binding p 99.7 2.8E-16 9.4E-21 105.1 9.6 73 34-107 5-85 (89)
211 2cqp_A RNA-binding protein 12; 99.7 1.4E-16 4.8E-21 108.6 8.1 76 32-107 12-95 (98)
212 3ex7_B RNA-binding protein 8A; 99.7 3.5E-16 1.2E-20 111.5 10.4 78 32-109 19-104 (126)
213 3pgw_S U1-70K; protein-RNA com 99.7 4.5E-17 1.5E-21 139.1 6.7 75 112-186 100-183 (437)
214 3ns6_A Eukaryotic translation 99.7 5.8E-17 2E-21 111.2 5.9 73 113-185 5-93 (100)
215 1x4e_A RNA binding motif, sing 99.7 5.6E-17 1.9E-21 107.7 5.4 73 33-105 3-83 (85)
216 2dhg_A TRNA selenocysteine ass 99.7 2.5E-16 8.4E-21 108.5 8.9 78 32-109 6-92 (104)
217 3s7r_A Heterogeneous nuclear r 99.7 4.2E-16 1.4E-20 103.9 9.7 73 31-104 7-87 (87)
218 2nlw_A Eukaryotic translation 99.7 2.8E-16 9.6E-21 108.7 9.1 78 30-107 10-100 (105)
219 2cpx_A Hypothetical protein FL 99.7 4.6E-16 1.6E-20 109.1 10.3 78 33-110 23-108 (115)
220 1p1t_A Cleavage stimulation fa 99.7 1.2E-16 4E-21 110.1 7.1 76 33-108 6-89 (104)
221 2dgw_A Probable RNA-binding pr 99.7 4.5E-16 1.6E-20 104.7 9.8 76 110-187 6-89 (91)
222 3beg_B Splicing factor, argini 99.7 2.7E-16 9.2E-21 110.6 9.0 77 113-189 15-98 (115)
223 2fc9_A NCL protein; structure 99.7 5.7E-16 2E-20 106.2 10.3 80 31-110 11-94 (101)
224 2cq4_A RNA binding motif prote 99.7 1.6E-16 5.6E-21 111.4 7.6 73 114-187 25-106 (114)
225 3ns6_A Eukaryotic translation 99.7 1.5E-16 5E-21 109.2 7.2 73 34-106 5-92 (100)
226 2cqp_A RNA-binding protein 12; 99.7 1.9E-16 6.6E-21 107.9 7.7 75 111-185 12-95 (98)
227 2kt5_A RNA and export factor-b 99.7 6.3E-16 2.2E-20 110.0 10.5 80 111-190 32-119 (124)
228 2cq2_A Hypothetical protein LO 99.7 3.7E-16 1.3E-20 109.3 8.9 77 33-109 23-108 (114)
229 1x4e_A RNA binding motif, sing 99.7 8.1E-17 2.8E-21 106.9 5.3 73 112-184 3-84 (85)
230 2dis_A Unnamed protein product 99.7 3.8E-16 1.3E-20 108.5 9.0 77 33-109 6-94 (109)
231 2fc8_A NCL protein; structure 99.7 8.8E-16 3E-20 105.4 10.6 83 27-109 7-94 (102)
232 2jwn_A Embryonic polyadenylate 99.7 4.2E-16 1.4E-20 110.8 9.3 75 114-189 36-119 (124)
233 2cqg_A TDP-43, TAR DNA-binding 99.7 1.4E-15 4.8E-20 104.6 11.7 78 110-189 11-97 (103)
234 1wg1_A KIAA1579 protein, homol 99.7 4.8E-16 1.6E-20 104.0 9.0 74 34-108 4-79 (88)
235 3s7r_A Heterogeneous nuclear r 99.7 8.7E-16 3E-20 102.4 10.2 72 110-182 7-87 (87)
236 2nlw_A Eukaryotic translation 99.7 4.2E-16 1.5E-20 107.8 8.8 74 112-185 13-100 (105)
237 3zzy_A Polypyrimidine tract-bi 99.7 7.7E-16 2.6E-20 110.0 10.4 73 114-186 28-107 (130)
238 1x5p_A Negative elongation fac 99.7 2.4E-15 8.3E-20 102.3 12.5 76 32-109 12-89 (97)
239 2dgw_A Probable RNA-binding pr 99.7 8.1E-16 2.8E-20 103.4 10.0 76 31-108 6-88 (91)
240 2ek1_A RNA-binding protein 12; 99.7 1.6E-16 5.5E-21 107.6 6.5 74 33-106 13-94 (95)
241 1fjc_A Nucleolin RBD2, protein 99.7 2.5E-16 8.4E-21 107.0 7.5 79 110-188 12-94 (96)
242 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.8E-16 6.1E-21 108.7 6.8 78 29-108 13-99 (100)
243 2diu_A KIAA0430 protein; struc 99.7 3.4E-16 1.2E-20 104.7 7.9 74 112-187 6-86 (96)
244 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.1E-15 3.6E-20 113.0 11.4 77 33-109 37-121 (156)
245 2i2y_A Fusion protein consists 99.7 7.2E-16 2.5E-20 113.2 10.3 78 30-107 68-148 (150)
246 1x4b_A Heterogeneous nuclear r 99.7 4.8E-16 1.6E-20 109.3 8.9 77 113-190 26-111 (116)
247 1s79_A Lupus LA protein; RRM, 99.7 2.8E-16 9.6E-21 108.4 7.5 72 112-184 9-88 (103)
248 2rs2_A Musashi-1, RNA-binding 99.6 9.1E-16 3.1E-20 106.8 10.1 79 30-109 20-106 (109)
249 2cqg_A TDP-43, TAR DNA-binding 99.6 2.2E-15 7.7E-20 103.5 11.9 78 31-110 11-96 (103)
250 3n9u_C Cleavage and polyadenyl 99.6 5.1E-16 1.8E-20 114.9 9.3 74 34-107 54-137 (156)
251 2lea_A Serine/arginine-rich sp 99.6 2.6E-16 8.8E-21 113.8 7.4 85 26-110 38-130 (135)
252 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.4E-16 8.1E-21 108.1 6.9 74 111-186 16-99 (100)
253 1sjr_A Polypyrimidine tract-bi 99.6 7.1E-16 2.4E-20 114.2 9.9 78 31-108 42-125 (164)
254 1wg1_A KIAA1579 protein, homol 99.6 5.9E-16 2E-20 103.6 8.6 73 113-186 4-79 (88)
255 2ek1_A RNA-binding protein 12; 99.6 1.9E-16 6.6E-21 107.2 6.2 73 112-184 13-94 (95)
256 2cq4_A RNA binding motif prote 99.6 3E-16 1E-20 110.0 7.3 74 33-107 23-104 (114)
257 2e44_A Insulin-like growth fac 99.6 9.6E-16 3.3E-20 104.0 9.6 77 32-108 12-93 (96)
258 1p1t_A Cleavage stimulation fa 99.6 2.9E-16 9.8E-21 108.2 6.9 75 113-187 7-90 (104)
259 3n9u_C Cleavage and polyadenyl 99.6 4.3E-16 1.5E-20 115.3 8.3 73 113-185 54-137 (156)
260 2rs2_A Musashi-1, RNA-binding 99.6 9.3E-16 3.2E-20 106.8 9.5 76 111-187 22-106 (109)
261 1x5o_A RNA binding motif, sing 99.6 1.7E-15 6E-20 106.0 11.0 77 31-107 21-112 (114)
262 1wez_A HnRNP H', FTP-3, hetero 99.6 8.7E-16 3E-20 105.7 9.2 79 110-190 11-97 (102)
263 3beg_B Splicing factor, argini 99.6 8.4E-16 2.9E-20 108.0 9.3 76 33-108 14-95 (115)
264 1fjc_A Nucleolin RBD2, protein 99.6 7.6E-16 2.6E-20 104.5 8.7 79 31-109 12-93 (96)
265 1wg5_A Heterogeneous nuclear r 99.6 1.2E-15 4.1E-20 105.3 9.8 76 32-108 12-95 (104)
266 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.5E-16 1.2E-20 101.8 6.6 68 36-104 1-76 (77)
267 2e5i_A Heterogeneous nuclear r 99.6 1.7E-15 5.9E-20 107.6 10.6 72 115-186 26-103 (124)
268 1x5o_A RNA binding motif, sing 99.6 1.7E-15 5.8E-20 106.1 10.5 75 111-185 22-112 (114)
269 2kn4_A Immunoglobulin G-bindin 99.6 1.4E-15 4.9E-20 112.4 10.5 78 32-109 67-152 (158)
270 2cpy_A RNA-binding protein 12; 99.6 4.7E-16 1.6E-20 109.1 7.4 76 31-107 11-94 (114)
271 2e44_A Insulin-like growth fac 99.6 1.1E-15 3.6E-20 103.8 8.7 75 112-186 13-93 (96)
272 1sjr_A Polypyrimidine tract-bi 99.6 7.5E-16 2.6E-20 114.1 8.5 74 113-186 45-125 (164)
273 1wg5_A Heterogeneous nuclear r 99.6 1.9E-15 6.4E-20 104.3 10.1 75 111-186 12-95 (104)
274 1x4b_A Heterogeneous nuclear r 99.6 8.7E-16 3E-20 107.9 8.5 77 33-110 25-109 (116)
275 2db1_A Heterogeneous nuclear r 99.6 5.2E-16 1.8E-20 109.6 7.4 77 30-107 12-98 (118)
276 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.4E-15 4.6E-20 110.2 9.7 74 31-104 59-140 (140)
277 2e5g_A U6 snRNA-specific termi 99.6 1.6E-15 5.6E-20 102.6 9.5 78 112-190 6-87 (94)
278 3zzy_A Polypyrimidine tract-bi 99.6 2.5E-15 8.6E-20 107.4 10.8 76 33-108 26-107 (130)
279 2hzc_A Splicing factor U2AF 65 99.6 1.1E-15 3.7E-20 101.8 8.4 70 33-103 4-86 (87)
280 2krb_A Eukaryotic translation 99.6 3.4E-16 1.2E-20 103.1 5.8 66 36-101 2-80 (81)
281 2m2b_A RNA-binding protein 10; 99.6 6.2E-16 2.1E-20 111.1 7.7 78 31-109 19-110 (131)
282 2e5i_A Heterogeneous nuclear r 99.6 4.6E-15 1.6E-19 105.4 12.0 76 33-108 23-103 (124)
283 2mss_A Protein (musashi1); RNA 99.6 3.7E-16 1.3E-20 101.3 5.8 67 37-104 1-75 (75)
284 1rk8_A CG8781-PA, CG8781-PA pr 99.6 2.2E-15 7.5E-20 112.4 10.6 79 31-109 68-154 (165)
285 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.6E-15 5.4E-20 109.8 9.6 73 110-182 59-140 (140)
286 2jwn_A Embryonic polyadenylate 99.6 1.8E-15 6.3E-20 107.5 9.6 75 34-109 35-117 (124)
287 2hgn_A Heterogeneous nuclear r 99.6 1.3E-16 4.3E-21 115.9 3.6 115 70-187 2-125 (139)
288 2e5g_A U6 snRNA-specific termi 99.6 2.4E-15 8.3E-20 101.7 9.7 77 32-109 5-84 (94)
289 2lcw_A RNA-binding protein FUS 99.4 2.9E-17 9.9E-22 115.6 0.0 82 111-192 4-102 (116)
290 3tyt_A Heterogeneous nuclear r 99.6 2.1E-15 7.1E-20 116.5 10.2 73 113-185 3-80 (205)
291 3d2w_A TAR DNA-binding protein 99.6 2.4E-15 8.3E-20 100.9 9.2 74 110-187 7-86 (89)
292 2ki2_A SS-DNA binding protein 99.6 1.2E-16 4.1E-21 107.2 2.7 74 115-189 2-84 (90)
293 2bz2_A Negative elongation fac 99.6 1.4E-15 4.9E-20 107.8 8.3 78 110-189 35-115 (121)
294 2ki2_A SS-DNA binding protein 99.6 1.9E-16 6.4E-21 106.3 3.5 73 36-109 2-82 (90)
295 1wez_A HnRNP H', FTP-3, hetero 99.6 1.6E-15 5.4E-20 104.4 8.2 77 31-109 11-94 (102)
296 2hgl_A HNRPF protein, heteroge 99.6 8.3E-16 2.8E-20 111.2 6.6 77 29-106 38-124 (136)
297 2dnn_A RNA-binding protein 12; 99.6 2.1E-15 7.2E-20 105.0 8.2 73 32-106 13-92 (109)
298 2krb_A Eukaryotic translation 99.6 5.5E-16 1.9E-20 102.1 5.0 65 115-179 2-80 (81)
299 2mss_A Protein (musashi1); RNA 99.6 4.5E-16 1.5E-20 100.8 4.4 66 116-182 1-75 (75)
300 3d2w_A TAR DNA-binding protein 99.6 4E-15 1.4E-19 99.8 9.2 73 32-108 8-85 (89)
301 2cpy_A RNA-binding protein 12; 99.6 2.1E-15 7.1E-20 105.8 8.1 75 111-186 12-95 (114)
302 1fj7_A Nucleolin RBD1, protein 99.6 6.9E-16 2.4E-20 105.8 5.4 77 32-109 14-97 (101)
303 2diu_A KIAA0430 protein; struc 99.6 2.8E-15 9.6E-20 100.3 8.1 74 34-109 8-86 (96)
304 3egn_A RNA-binding protein 40; 99.6 1.4E-15 4.9E-20 110.8 7.2 78 110-187 41-132 (143)
305 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1E-15 3.6E-20 99.5 5.6 67 115-182 1-76 (77)
306 1fj7_A Nucleolin RBD1, protein 99.6 4.4E-16 1.5E-20 106.7 3.9 75 112-187 15-97 (101)
307 2db1_A Heterogeneous nuclear r 99.6 1.8E-15 6.2E-20 106.8 7.0 74 111-185 14-98 (118)
308 1wel_A RNA-binding protein 12; 99.6 8.3E-16 2.8E-20 109.4 5.2 75 32-107 22-104 (124)
309 2hzc_A Splicing factor U2AF 65 99.6 3.6E-15 1.2E-19 99.2 7.5 69 112-181 4-86 (87)
310 3egn_A RNA-binding protein 40; 99.6 3.8E-15 1.3E-19 108.5 8.2 76 33-108 43-131 (143)
311 2hgl_A HNRPF protein, heteroge 99.6 1.5E-15 5.2E-20 109.8 5.9 75 110-185 40-125 (136)
312 1wel_A RNA-binding protein 12; 99.6 8.9E-16 3.1E-20 109.2 4.6 74 111-185 22-104 (124)
313 2lmi_A GRSF-1, G-rich sequence 99.6 1.2E-15 4.3E-20 105.8 5.2 75 32-107 8-92 (107)
314 1wf0_A TDP-43, TAR DNA-binding 99.6 2.5E-15 8.5E-20 100.4 6.3 75 112-190 3-83 (88)
315 2f3j_A RNA and export factor b 99.6 6.2E-15 2.1E-19 111.3 9.2 77 32-108 85-168 (177)
316 1b7f_A Protein (SXL-lethal pro 99.6 1.1E-14 3.8E-19 108.0 10.5 76 113-188 2-86 (168)
317 1iqt_A AUF1, heterogeneous nuc 99.6 1.3E-15 4.6E-20 98.5 4.8 67 37-104 1-75 (75)
318 3q2s_C Cleavage and polyadenyl 99.6 3.7E-15 1.3E-19 117.0 7.9 73 34-106 67-149 (229)
319 1fxl_A Paraneoplastic encephal 99.6 1.3E-14 4.3E-19 107.4 10.2 74 114-187 2-84 (167)
320 2bz2_A Negative elongation fac 99.6 1.2E-14 4.1E-19 103.1 9.6 76 32-109 36-113 (121)
321 2lmi_A GRSF-1, G-rich sequence 99.6 1.4E-15 4.7E-20 105.5 4.4 75 110-185 7-92 (107)
322 2xs2_A Deleted in azoospermia- 99.6 3.5E-15 1.2E-19 102.4 6.4 74 33-108 7-87 (102)
323 4f02_A Polyadenylate-binding p 99.6 1.2E-14 4E-19 112.7 10.1 77 110-186 11-96 (213)
324 3md3_A Nuclear and cytoplasmic 99.6 2.6E-14 9E-19 105.5 11.5 76 30-105 82-165 (166)
325 3q2s_C Cleavage and polyadenyl 99.6 3.4E-15 1.2E-19 117.2 6.9 72 113-184 67-149 (229)
326 1wf0_A TDP-43, TAR DNA-binding 99.6 4.6E-15 1.6E-19 99.1 6.3 76 33-110 3-81 (88)
327 2dnn_A RNA-binding protein 12; 99.6 9E-15 3.1E-19 101.8 7.9 70 114-185 16-93 (109)
328 3u1l_A PRE-mRNA-splicing facto 99.6 6.5E-15 2.2E-19 115.8 7.9 77 111-187 131-231 (240)
329 2f3j_A RNA and export factor b 99.6 9.7E-15 3.3E-19 110.2 8.2 77 111-187 85-169 (177)
330 2voo_A Lupus LA protein; RNA-b 99.6 4.7E-14 1.6E-18 107.9 12.0 107 78-185 63-187 (193)
331 2xs2_A Deleted in azoospermia- 99.5 8.5E-15 2.9E-19 100.4 6.7 73 113-187 8-88 (102)
332 2lcw_A RNA-binding protein FUS 99.3 4.2E-16 1.4E-20 109.6 0.0 77 33-109 5-97 (116)
333 3u1l_A PRE-mRNA-splicing facto 99.5 1.6E-14 5.6E-19 113.5 8.7 78 32-109 131-231 (240)
334 1iqt_A AUF1, heterogeneous nuc 99.5 2.6E-15 8.9E-20 97.2 3.3 66 116-182 1-75 (75)
335 2g4b_A Splicing factor U2AF 65 99.5 4.7E-14 1.6E-18 105.0 10.5 73 33-105 92-172 (172)
336 2qfj_A FBP-interacting repress 99.5 5E-14 1.7E-18 108.7 11.0 78 33-110 123-208 (216)
337 2yh0_A Splicing factor U2AF 65 99.5 6.3E-14 2.1E-18 106.7 11.2 78 32-109 111-196 (198)
338 2hgn_A Heterogeneous nuclear r 99.5 4.5E-15 1.5E-19 107.7 4.5 77 31-109 42-125 (139)
339 2hgm_A HNRPF protein, heteroge 99.5 1.4E-14 4.9E-19 103.2 7.0 73 32-106 39-120 (126)
340 2dha_A FLJ20171 protein; RRM d 99.5 5.6E-15 1.9E-19 105.0 4.7 73 33-106 21-104 (123)
341 3pgw_S U1-70K; protein-RNA com 99.5 5E-14 1.7E-18 120.3 10.8 78 31-108 98-183 (437)
342 2adc_A Polypyrimidine tract-bi 99.5 3.1E-14 1.1E-18 111.5 8.7 77 109-185 29-110 (229)
343 2dit_A HIV TAT specific factor 99.5 1.3E-13 4.3E-18 96.3 10.5 78 110-187 11-104 (112)
344 2hgm_A HNRPF protein, heteroge 99.5 3E-14 1E-18 101.5 6.8 73 111-185 39-121 (126)
345 2dha_A FLJ20171 protein; RRM d 99.5 1.2E-14 4E-19 103.3 4.2 72 113-185 22-105 (123)
346 3pgw_A U1-A; protein-RNA compl 99.5 1.1E-13 3.8E-18 111.3 10.2 77 110-186 5-91 (282)
347 2pe8_A Splicing factor 45; RRM 99.5 1.4E-13 4.7E-18 95.1 9.3 74 112-185 6-94 (105)
348 1qm9_A Polypyrimidine tract-bi 99.5 4.6E-14 1.6E-18 107.8 7.5 73 114-186 3-80 (198)
349 1fje_B Nucleolin RBD12, protei 99.5 1.1E-13 3.9E-18 103.4 9.4 75 32-107 96-174 (175)
350 2dnl_A Cytoplasmic polyadenyla 99.5 8.9E-14 3.1E-18 97.4 8.1 69 33-104 6-85 (114)
351 1l3k_A Heterogeneous nuclear r 99.5 1.2E-13 4.1E-18 104.9 9.4 77 110-187 9-94 (196)
352 3sde_A Paraspeckle component 1 99.5 1.1E-13 3.8E-18 110.4 9.4 75 111-185 19-96 (261)
353 3nmr_A Cugbp ELAV-like family 99.5 1.6E-13 5.5E-18 102.2 9.3 74 32-105 92-175 (175)
354 2cjk_A Nuclear polyadenylated 99.5 5.1E-14 1.8E-18 104.3 6.3 74 33-107 85-166 (167)
355 2dit_A HIV TAT specific factor 99.5 5.2E-13 1.8E-17 93.2 10.8 78 31-108 11-103 (112)
356 2voo_A Lupus LA protein; RNA-b 99.5 2.7E-13 9.3E-18 103.6 9.4 73 34-107 108-187 (193)
357 2pe8_A Splicing factor 45; RRM 99.5 5.1E-13 1.7E-17 92.2 9.8 74 33-106 6-93 (105)
358 2j8a_A Histone-lysine N-methyl 99.5 2E-13 6.7E-18 96.5 7.7 71 115-185 3-96 (136)
359 2dnl_A Cytoplasmic polyadenyla 99.4 4.8E-13 1.7E-17 93.6 8.8 68 112-182 6-85 (114)
360 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.7E-12 5.9E-17 88.7 10.0 82 96-190 10-95 (100)
361 2j8a_A Histone-lysine N-methyl 99.4 4.3E-13 1.5E-17 94.8 6.4 70 36-105 3-94 (136)
362 3v4m_A Splicing factor U2AF 65 99.4 1.2E-12 4.2E-17 90.3 7.8 74 112-185 3-97 (105)
363 3tht_A Alkylated DNA repair pr 99.3 3.1E-12 1.1E-16 105.5 8.5 73 111-183 15-97 (345)
364 3v4m_A Splicing factor U2AF 65 99.3 6.1E-12 2.1E-16 86.8 8.4 73 34-106 4-96 (105)
365 3tht_A Alkylated DNA repair pr 99.3 5.6E-12 1.9E-16 104.0 9.0 73 32-104 15-96 (345)
366 2d9o_A DNAJ (HSP40) homolog, s 99.3 5.6E-11 1.9E-15 81.1 12.0 73 35-109 10-92 (100)
367 3ue2_A Poly(U)-binding-splicin 99.3 1.3E-11 4.4E-16 86.9 9.0 73 113-185 19-109 (118)
368 1jmt_A Splicing factor U2AF 35 99.3 9.4E-13 3.2E-17 90.7 2.7 64 119-182 20-103 (104)
369 3s6e_A RNA-binding protein 39; 99.3 1.2E-11 4.1E-16 86.5 8.1 75 111-185 4-93 (114)
370 2dnr_A Synaptojanin-1; RRM dom 99.3 1.5E-11 5.1E-16 81.5 7.6 73 112-185 5-86 (91)
371 3s6e_A RNA-binding protein 39; 99.3 3.1E-11 1.1E-15 84.4 9.6 74 33-106 5-92 (114)
372 1jmt_A Splicing factor U2AF 35 99.3 2.3E-12 7.9E-17 88.8 3.3 66 40-105 20-104 (104)
373 3ue2_A Poly(U)-binding-splicin 99.2 4.1E-11 1.4E-15 84.3 9.3 73 34-106 19-108 (118)
374 2dnr_A Synaptojanin-1; RRM dom 99.1 7E-10 2.4E-14 73.5 8.4 73 35-108 7-87 (91)
375 1owx_A Lupus LA protein, SS-B, 99.1 6.8E-10 2.3E-14 78.0 8.7 74 110-183 14-94 (121)
376 1owx_A Lupus LA protein, SS-B, 99.1 8.4E-10 2.9E-14 77.5 9.0 73 33-105 16-94 (121)
377 1ufw_A Synaptojanin 2; RNP dom 99.1 4.2E-10 1.4E-14 74.9 6.6 73 111-184 12-94 (95)
378 1ufw_A Synaptojanin 2; RNP dom 98.8 1.5E-08 5.1E-13 67.4 7.4 71 34-105 14-93 (95)
379 3dxb_A Thioredoxin N-terminall 98.7 5E-08 1.7E-12 75.6 7.3 60 126-185 141-213 (222)
380 2l9w_A U4/U6 snRNA-associated- 98.7 1.3E-07 4.5E-12 64.2 8.1 72 112-183 19-98 (117)
381 3dxb_A Thioredoxin N-terminall 98.6 1.7E-07 5.7E-12 72.6 7.8 60 47-106 141-212 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.5 6.5E-07 2.2E-11 60.8 8.8 71 33-103 19-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.5 2.9E-06 1E-10 57.1 11.8 90 33-128 6-100 (104)
384 1wey_A Calcipressin 1; structu 98.0 2.2E-05 7.4E-10 53.0 7.7 73 114-186 5-85 (104)
385 1wey_A Calcipressin 1; structu 98.0 1.9E-05 6.6E-10 53.3 7.1 73 35-107 5-84 (104)
386 2dhx_A Poly (ADP-ribose) polym 97.9 0.00018 6.1E-09 48.4 10.7 75 113-188 7-87 (104)
387 1uw4_A UPF3X; nonsense mediate 97.8 7.5E-05 2.6E-09 49.4 7.4 61 36-96 2-72 (91)
388 1whv_A Poly(A)-specific ribonu 97.7 0.00029 1E-08 46.8 8.3 59 31-90 12-70 (100)
389 1wwh_A Nucleoporin 35, nucleop 97.5 0.00047 1.6E-08 47.7 8.2 83 21-105 10-95 (119)
390 1uw4_A UPF3X; nonsense mediate 97.3 0.0014 4.8E-08 43.2 7.9 60 115-174 2-72 (91)
391 3ctr_A Poly(A)-specific ribonu 97.3 0.00054 1.9E-08 45.6 5.7 54 36-90 7-60 (101)
392 2l08_A Regulator of nonsense t 97.1 0.00052 1.8E-08 45.7 4.1 63 34-96 8-80 (97)
393 1whv_A Poly(A)-specific ribonu 97.1 0.0024 8.2E-08 42.4 7.1 54 114-168 16-70 (100)
394 3ctr_A Poly(A)-specific ribonu 97.0 0.0022 7.4E-08 42.7 6.5 52 116-168 8-60 (101)
395 1wwh_A Nucleoporin 35, nucleop 96.7 0.0086 3E-07 41.3 7.6 69 113-183 23-95 (119)
396 3p3d_A Nucleoporin 53; structu 96.2 0.0081 2.8E-07 42.1 5.2 72 34-107 6-99 (132)
397 2l08_A Regulator of nonsense t 96.0 0.0092 3.2E-07 39.6 4.5 61 114-174 9-80 (97)
398 3pq1_A Poly(A) RNA polymerase; 95.4 0.008 2.7E-07 51.3 3.0 53 34-87 52-107 (464)
399 3p3d_A Nucleoporin 53; structu 94.4 0.046 1.6E-06 38.3 4.0 69 115-185 8-99 (132)
400 3pq1_A Poly(A) RNA polymerase; 93.9 0.027 9.3E-07 48.0 2.6 53 113-166 52-108 (464)
401 3d45_A Poly(A)-specific ribonu 93.5 0.23 8E-06 42.8 7.9 55 35-90 440-494 (507)
402 2g0c_A ATP-dependent RNA helic 90.5 0.97 3.3E-05 28.0 6.2 59 125-183 12-75 (76)
403 3d45_A Poly(A)-specific ribonu 87.0 1.9 6.6E-05 37.1 7.6 56 114-170 440-496 (507)
404 4eyt_A Telomerase associated p 75.4 14 0.00047 23.9 8.0 57 34-90 11-67 (129)
405 2g0c_A ATP-dependent RNA helic 73.0 13 0.00045 22.6 7.1 58 47-105 13-75 (76)
406 4eyt_A Telomerase associated p 62.6 28 0.00096 22.4 7.0 54 114-167 12-66 (129)
407 3ts2_A Protein LIN-28 homolog 46.8 5.1 0.00017 28.4 0.5 28 129-156 2-29 (148)
408 3ts2_A Protein LIN-28 homolog 45.5 3.6 0.00012 29.2 -0.5 28 50-77 2-29 (148)
409 2e5p_A Protein PHF1, PHD finge 29.5 28 0.00097 21.0 1.7 19 139-157 28-46 (68)
410 2od0_A Hypothetical protein VP 25.5 43 0.0015 21.8 2.4 27 47-73 4-30 (105)
411 2m0o_A PHD finger protein 1; t 25.4 36 0.0012 21.1 1.7 19 139-157 45-63 (79)
412 2cu1_A Mitogen-activated prote 21.9 1.6E+02 0.0055 19.2 4.4 52 41-92 22-74 (103)
413 2eqj_A Metal-response element- 21.4 49 0.0017 19.9 1.7 19 139-157 32-50 (66)
414 3syn_E ATP-binding protein YLX 20.9 33 0.0011 15.4 0.7 12 1-12 3-14 (23)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.7e-34 Score=224.08 Aligned_cols=155 Identities=21% Similarity=0.503 Sum_probs=140.1
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
..+.++|||+|||+++|+++|+++|+.||.|.++.++ +|||||+|.+.++|.+|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 3567899999999999999999999999999999987 46999999999999999999999999999999999
Q ss_pred cccCCCC-CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe------cCEEEEEEcc-HhHHHHHHHhCCceeCCe
Q psy3721 104 ATSRKGP-NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGK 175 (207)
Q Consensus 104 ~~~~~~~-~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~------~~~afv~f~~-e~a~~A~~~l~g~~~~g~ 175 (207)
+...... .....+|||+|||+++++++|+++|+.||.|.+++++ +|||||+|.+ ++|.+|+..|||..++|+
T Consensus 92 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~ 171 (213)
T 4f02_A 92 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171 (213)
T ss_dssp CCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred ccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 8754421 2235689999999999999999999999999999986 6899999999 999999999999999999
Q ss_pred eEEEEeccCcc
Q psy3721 176 PMKVQISTSRV 186 (207)
Q Consensus 176 ~i~v~~~~~~~ 186 (207)
+|+|.+++++.
T Consensus 172 ~i~V~~a~~~~ 182 (213)
T 4f02_A 172 KVFVGRFKSRK 182 (213)
T ss_dssp ECEEEECCCHH
T ss_pred EEEEEEcCCCc
Confidence 99999998753
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-33 Score=207.64 Aligned_cols=149 Identities=22% Similarity=0.512 Sum_probs=139.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCC
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 108 (207)
++|||+|||+++|+++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.+++..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 589999999999999999999999999999996 4799999999999999999999999999999999997654
Q ss_pred C-CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEE
Q psy3721 109 G-PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMK 178 (207)
Q Consensus 109 ~-~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~ 178 (207)
. ...+..+|||+|||..+++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+..|||..++|+.|+
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 4 44567899999999999999999999999999999997 5699999999 999999999999999999999
Q ss_pred EEeccC
Q psy3721 179 VQISTS 184 (207)
Q Consensus 179 v~~~~~ 184 (207)
|.|+++
T Consensus 161 v~~a~~ 166 (166)
T 3md3_A 161 INWAAK 166 (166)
T ss_dssp EEESCC
T ss_pred EEecCC
Confidence 999864
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.6e-32 Score=205.30 Aligned_cols=148 Identities=24% Similarity=0.492 Sum_probs=137.4
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
+.++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.+++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999886 4799999999999999999999999999999999998
Q ss_pred cCCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCC--
Q psy3721 106 SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDG-- 174 (207)
Q Consensus 106 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g-- 174 (207)
+... ..+..+|||+|||..+++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+..|||..+.|
T Consensus 82 ~~~~-~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 160 (168)
T 1b7f_A 82 PGGE-SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGS 160 (168)
T ss_dssp CCSS-TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred CCcc-cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCC
Confidence 6553 3457899999999999999999999999999999987 3699999999 99999999999999988
Q ss_pred eeEEEEec
Q psy3721 175 KPMKVQIS 182 (207)
Q Consensus 175 ~~i~v~~~ 182 (207)
++|+|.||
T Consensus 161 ~~l~V~~A 168 (168)
T 1b7f_A 161 QPLSVRLA 168 (168)
T ss_dssp SCCEEEEC
T ss_pred eEEEEEeC
Confidence 99999986
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.5e-32 Score=213.49 Aligned_cols=157 Identities=15% Similarity=0.382 Sum_probs=141.9
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
..++|||+|||+++|+++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.+++..+.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45799999999999999999999999999999995 6899999999999999999999999999999999876
Q ss_pred cCCC----------CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHH
Q psy3721 106 SRKG----------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKE 166 (207)
Q Consensus 106 ~~~~----------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~ 166 (207)
.... ......+|||+|||.++++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 5532 12456899999999999999999999999999999997 5699999999 999999999
Q ss_pred hCCceeCCeeEEEEeccCccCCCC
Q psy3721 167 LNGMMVDGKPMKVQISTSRVRQRP 190 (207)
Q Consensus 167 l~g~~~~g~~i~v~~~~~~~~~~~ 190 (207)
|||..++|+.|+|.|+.+.+...+
T Consensus 187 l~g~~~~g~~i~V~~a~~~~~~~~ 210 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPPMPLL 210 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCSSTTS
T ss_pred ccCCEeCCcEEEEEEecCCCCCCC
Confidence 999999999999999998755443
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2.3e-32 Score=203.94 Aligned_cols=148 Identities=26% Similarity=0.520 Sum_probs=136.1
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
++++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.++++|++|++.+++..+.|+.|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999987 2799999999999999999999999999999999988
Q ss_pred cCCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCee
Q psy3721 106 SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKP 176 (207)
Q Consensus 106 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~ 176 (207)
+... .....+|||+|||.++++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+..|||..+.|+.
T Consensus 81 ~~~~-~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 81 PSSA-SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp CCCG-GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred CCcc-cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 6543 3456789999999999999999999999999999986 5799999999 9999999999999999965
Q ss_pred --EEEEec
Q psy3721 177 --MKVQIS 182 (207)
Q Consensus 177 --i~v~~~ 182 (207)
|+|.||
T Consensus 160 ~~i~v~~A 167 (167)
T 1fxl_A 160 EPITVKFA 167 (167)
T ss_dssp SCCEEEEC
T ss_pred cceEEEeC
Confidence 888875
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=5.3e-32 Score=207.45 Aligned_cols=157 Identities=26% Similarity=0.490 Sum_probs=135.2
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
++...++|||+|||+++|+++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 34568899999999999999999999999999999987 46999999999999999966 8999999999999
Q ss_pred EcccCCCC-----CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhC
Q psy3721 103 AATSRKGP-----NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELN 168 (207)
Q Consensus 103 ~~~~~~~~-----~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~ 168 (207)
++...... ..+..+|||+|||+++++++|+++|+.||.|..+.+. +|+|||+|.+ ++|.+|+.. +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~ 166 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K 166 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C
Confidence 98765432 2345899999999999999999999999999999997 5699999999 999999987 8
Q ss_pred CceeCCeeEEEEeccCccCCC
Q psy3721 169 GMMVDGKPMKVQISTSRVRQR 189 (207)
Q Consensus 169 g~~~~g~~i~v~~~~~~~~~~ 189 (207)
|..++|+.|.|.++.++....
T Consensus 167 ~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 167 YHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp CCEETTEECEEEECC------
T ss_pred CcEECCEEEEEEecCChhHhc
Confidence 999999999999999875433
No 7
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=5.4e-32 Score=213.21 Aligned_cols=158 Identities=21% Similarity=0.440 Sum_probs=143.4
Q ss_pred CCCCCCCcccEEEcCCCC-CCCHHHHHHHhhcCCceEEEEEE---CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 28 PGFSSVGTFKIFIGNVNP-GTSVELIRPLFEKYGKVVECDVV---KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 28 ~~~~~~~~~~l~V~~lp~-~~t~~~l~~~f~~~g~i~~i~~~---~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
|.....+.++|||+|||+ .+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.+++..+.|+.|.|.+
T Consensus 27 p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 27 PGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp GGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 334446788999999999 99999999999999999999998 69999999999999999999999999999999999
Q ss_pred cccCCC----------------------------------CCCCCceeeecCCCCCCChhHHHHhcccCC-cEEEEEEe-
Q psy3721 104 ATSRKG----------------------------------PNTPTTKVFVGNLSDNTRAPEVRELFVPYG-TVVECDIV- 147 (207)
Q Consensus 104 ~~~~~~----------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~i~~~~~~- 147 (207)
+..... ..+++.+|||+|||..+++++|+++|+.|| .|..+++.
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 875410 013468899999999999999999999999 99999994
Q ss_pred --cCEEEEEEcc-HhHHHHHHHhCCceeC-CeeEEEEeccCc
Q psy3721 148 --RNYGFVHIDS-PDINKCIKELNGMMVD-GKPMKVQISTSR 185 (207)
Q Consensus 148 --~~~afv~f~~-e~a~~A~~~l~g~~~~-g~~i~v~~~~~~ 185 (207)
+++|||+|.+ ++|.+|+..|||..+. |+.|+|.|++++
T Consensus 187 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 187 KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 7899999999 9999999999999999 999999999875
No 8
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=9.9e-32 Score=217.44 Aligned_cols=154 Identities=21% Similarity=0.418 Sum_probs=140.0
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHH----HHhhcCCceEEEEEE-----CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeE
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIR----PLFEKYGKVVECDVV-----KNYGFVHMENDEEGRTAIKELNGQIVNEKPLK 100 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~----~~f~~~g~i~~i~~~-----~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 100 (207)
....+.++|||+|||+++++++|+ ++|+.||.|.++.+. +|||||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 345678999999999999999977 899999999999987 48999999999999999999999999999999
Q ss_pred EEEcccCCC-----------------------------------------------------------------------
Q psy3721 101 IEAATSRKG----------------------------------------------------------------------- 109 (207)
Q Consensus 101 v~~~~~~~~----------------------------------------------------------------------- 109 (207)
|.++.....
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 999865431
Q ss_pred ---------------------------------------CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe---
Q psy3721 110 ---------------------------------------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 147 (207)
Q Consensus 110 ---------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--- 147 (207)
...++.+|||+|||..+++++|+++|+.||.|.++++.
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 11245789999999999999999999999999999997
Q ss_pred cCEEEEEEcc-HhHHHHHHHhCCceeC-CeeEEEEecc
Q psy3721 148 RNYGFVHIDS-PDINKCIKELNGMMVD-GKPMKVQIST 183 (207)
Q Consensus 148 ~~~afv~f~~-e~a~~A~~~l~g~~~~-g~~i~v~~~~ 183 (207)
+|+|||+|.+ ++|.+|+..|||..+. |+.|+|.|++
T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 4899999999 9999999999999999 9999999986
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1e-31 Score=206.13 Aligned_cols=154 Identities=23% Similarity=0.457 Sum_probs=139.0
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcC----C-------ceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeE
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKY----G-------KVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNEKPLK 100 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~----g-------~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 100 (207)
..++|||+|||+++|+++|+++|+.| | .|.++.+. +|||||+|.+.++|++|+ .+++..+.|+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 46899999999999999999999999 5 77777776 799999999999999999 8999999999999
Q ss_pred EEEcccCCCC-------------------CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEE
Q psy3721 101 IEAATSRKGP-------------------NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFV 153 (207)
Q Consensus 101 v~~~~~~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv 153 (207)
|.++...... ..+..+|||+|||..+++++|+++|+.||.|.++.+. +|+|||
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV 161 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 161 (198)
T ss_dssp EECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEE
T ss_pred EeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEE
Confidence 9998654221 1456899999999999999999999999999999987 569999
Q ss_pred EEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccCC
Q psy3721 154 HIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188 (207)
Q Consensus 154 ~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 188 (207)
+|.+ ++|.+|+..|||..++|+.|+|.|++++.++
T Consensus 162 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 162 EYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKN 197 (198)
T ss_dssp EESSSSHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred EECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999 9999999999999999999999999987543
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=8.7e-32 Score=202.44 Aligned_cols=150 Identities=28% Similarity=0.490 Sum_probs=138.1
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE----------CCEEEEEeCChHHHHHHHHHhcCCeeC---CeeeE
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV----------KNYGFVHMENDEEGRTAIKELNGQIVN---EKPLK 100 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~----------~~~~fV~f~~~~~a~~a~~~l~~~~~~---g~~i~ 100 (207)
+.++|||+|||+++|+++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999885 469999999999999999999998875 68899
Q ss_pred EEEcccCCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCcee
Q psy3721 101 IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMV 172 (207)
Q Consensus 101 v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~ 172 (207)
+.++........+..+|||+|||+.+++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+..|||..+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 99988887777788999999999999999999999999999999997 5699999999 999999999999987
Q ss_pred C---CeeEEEEecc
Q psy3721 173 D---GKPMKVQIST 183 (207)
Q Consensus 173 ~---g~~i~v~~~~ 183 (207)
. |++|+|.|+.
T Consensus 162 ~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 162 MEGCSSPMVVKFAD 175 (175)
T ss_dssp CTTCSSCCEEEECC
T ss_pred cCCCCCCeEEEecC
Confidence 6 4999999973
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=1.1e-31 Score=201.55 Aligned_cols=148 Identities=25% Similarity=0.497 Sum_probs=136.3
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcC----C-------ceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeE
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKY----G-------KVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNEKPLK 100 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~----g-------~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 100 (207)
+.++|||+|||+++|+++|+++|+.| | .|.++.+. +|||||+|.++++|++|+ .+++..+.|+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 46899999999999999999999999 7 78888876 799999999999999999 8999999999999
Q ss_pred EEEcccCCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCce
Q psy3721 101 IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMM 171 (207)
Q Consensus 101 v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~ 171 (207)
|.++.... ......+|||+|||.++++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+..|||..
T Consensus 82 v~~~~~~~-~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (172)
T 2g4b_A 82 IRRPHDYQ-PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ 160 (172)
T ss_dssp EECCSSCC-CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCE
T ss_pred ecCCcccC-CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCE
Confidence 99876544 33457899999999999999999999999999999996 4699999999 99999999999999
Q ss_pred eCCeeEEEEecc
Q psy3721 172 VDGKPMKVQIST 183 (207)
Q Consensus 172 ~~g~~i~v~~~~ 183 (207)
++|+.|+|.|+.
T Consensus 161 ~~g~~l~V~~As 172 (172)
T 2g4b_A 161 LGDKKLLVQRAS 172 (172)
T ss_dssp ETTEECEEEECC
T ss_pred ECCeEEEEEeCC
Confidence 999999999973
No 12
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.98 E-value=1.4e-31 Score=207.61 Aligned_cols=149 Identities=14% Similarity=0.205 Sum_probs=132.6
Q ss_pred CcccEEEcCCC-CCCCHHHHHHHhhcCCceEEEEEE---CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCC
Q psy3721 34 GTFKIFIGNVN-PGTSVELIRPLFEKYGKVVECDVV---KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 34 ~~~~l~V~~lp-~~~t~~~l~~~f~~~g~i~~i~~~---~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 109 (207)
+.++|||+||| ..+++++|+++|+.||.|.++++. +|||||+|.+.++|+.|++.|+|..+.|+.|+|.++.....
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 46799999999 799999999999999999999997 58999999999999999999999999999999999853210
Q ss_pred ------------------------------------CCCCCceeeecCCCCCCChhHHHHhcccCCcE--EEEEEe----
Q psy3721 110 ------------------------------------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV--VECDIV---- 147 (207)
Q Consensus 110 ------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i--~~~~~~---- 147 (207)
..+++.+|||+|||+++++++|+++|+.||.| ..+++.
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 01345689999999999999999999999998 888886
Q ss_pred --cCEEEEEEcc-HhHHHHHHHhCCceeCCe----eEEEEec
Q psy3721 148 --RNYGFVHIDS-PDINKCIKELNGMMVDGK----PMKVQIS 182 (207)
Q Consensus 148 --~~~afv~f~~-e~a~~A~~~l~g~~~~g~----~i~v~~~ 182 (207)
+|+|||+|.+ ++|.+|+..|||..+.|+ ++.|+++
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 3699999999 999999999999999887 5666664
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=6.3e-32 Score=203.76 Aligned_cols=155 Identities=23% Similarity=0.383 Sum_probs=136.3
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEE-----EEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE-----CDVV--KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~-----i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
..+.+.++|||+|||+++++++|+++|+.||.+.. ...- +|||||+|.+.++|++|+ .+++..+.|+.|+|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 44567899999999999999999999999886533 2221 699999999999999999 599999999999999
Q ss_pred EcccCCC-CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEE---ecCEEEEEEcc-HhHHHHHHHhCCceeCCeeE
Q psy3721 103 AATSRKG-PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI---VRNYGFVHIDS-PDINKCIKELNGMMVDGKPM 177 (207)
Q Consensus 103 ~~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~---~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i 177 (207)
++..... ...+..+|||+|||.++++++|+++|+.||.|..+.. .+|+|||+|.+ ++|.+|+..|||..++|+.|
T Consensus 87 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 166 (175)
T 1fje_B 87 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 166 (175)
T ss_dssp CCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEE
T ss_pred cCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 9986543 3446789999999999999999999999999988811 17899999999 99999999999999999999
Q ss_pred EEEeccCc
Q psy3721 178 KVQISTSR 185 (207)
Q Consensus 178 ~v~~~~~~ 185 (207)
+|.|++++
T Consensus 167 ~v~~a~~k 174 (175)
T 1fje_B 167 SLYYTGEK 174 (175)
T ss_dssp EEEECSSC
T ss_pred EEEecCCC
Confidence 99999875
No 14
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.98 E-value=8.8e-32 Score=207.00 Aligned_cols=152 Identities=20% Similarity=0.418 Sum_probs=139.9
Q ss_pred CcccEEEcCCCC-CCCHHHHHHHhhcCCceEEEEEE---CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCC
Q psy3721 34 GTFKIFIGNVNP-GTSVELIRPLFEKYGKVVECDVV---KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 34 ~~~~l~V~~lp~-~~t~~~l~~~f~~~g~i~~i~~~---~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 109 (207)
+.++|||+|||+ .+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.+++..+.|+.|.|.++.....
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 457999999999 99999999999999999999998 68999999999999999999999999999999999875421
Q ss_pred ----------------------------------CCCCCceeeecCCCCCCChhHHHHhcccCC-cEEEEEEe---cCEE
Q psy3721 110 ----------------------------------PNTPTTKVFVGNLSDNTRAPEVRELFVPYG-TVVECDIV---RNYG 151 (207)
Q Consensus 110 ----------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~i~~~~~~---~~~a 151 (207)
..+++.+|||+|||..+++++|+++|+.|| .|..+++. +|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~a 161 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA 161 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCE
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEE
Confidence 113478899999999999999999999999 99999994 6899
Q ss_pred EEEEcc-HhHHHHHHHhCCceeC-CeeEEEEeccCc
Q psy3721 152 FVHIDS-PDINKCIKELNGMMVD-GKPMKVQISTSR 185 (207)
Q Consensus 152 fv~f~~-e~a~~A~~~l~g~~~~-g~~i~v~~~~~~ 185 (207)
||+|.+ ++|.+|+..|||..++ |+.|+|.|++++
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 999999 9999999999999999 999999999875
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=6.4e-32 Score=202.01 Aligned_cols=148 Identities=26% Similarity=0.542 Sum_probs=133.9
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
+.++|||+|||+++|+++|+++|+.||.|.++.+. +|||||+|.+.++|++|++. +..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 46899999999999999999999999999999987 47999999999999999984 678999999999886
Q ss_pred cCCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCee
Q psy3721 106 SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKP 176 (207)
Q Consensus 106 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~ 176 (207)
+... ..+..+|||+|||+++++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+. ++|..++|++
T Consensus 80 ~~~~-~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 157 (167)
T 2cjk_A 80 PRDE-QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRK 157 (167)
T ss_dssp CHHH-HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSC
T ss_pred chhh-ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeE
Confidence 5432 2345789999999999999999999999999999987 4699999999 99999998 8999999999
Q ss_pred EEEEeccCc
Q psy3721 177 MKVQISTSR 185 (207)
Q Consensus 177 i~v~~~~~~ 185 (207)
|+|.|+.++
T Consensus 158 i~V~~a~pk 166 (167)
T 2cjk_A 158 IEIKRAEPR 166 (167)
T ss_dssp EEEEECCCC
T ss_pred EEEeecCCC
Confidence 999999875
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.1e-29 Score=205.51 Aligned_cols=155 Identities=13% Similarity=0.272 Sum_probs=142.1
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
...++|||+|||+.+++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|++.+++..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 356799999999999999999999999999999886 469999999999999999999999999999999999
Q ss_pred ccCCC--CCCCCceeeecCCCCCC-ChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeC
Q psy3721 105 TSRKG--PNTPTTKVFVGNLSDNT-RAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVD 173 (207)
Q Consensus 105 ~~~~~--~~~~~~~l~v~nl~~~~-t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~ 173 (207)
.+... ...+..+|||+|||.++ ++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+..|||..++
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 87654 33467899999999995 999999999999999999986 5799999999 9999999999999999
Q ss_pred CeeEEEEeccCccC
Q psy3721 174 GKPMKVQISTSRVR 187 (207)
Q Consensus 174 g~~i~v~~~~~~~~ 187 (207)
|++|+|.|++++..
T Consensus 253 g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 253 GSHLRVSFCAPGPP 266 (284)
T ss_dssp TEECEEEECCSSSC
T ss_pred CeEEEEEEecCCCc
Confidence 99999999988754
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.9e-29 Score=203.10 Aligned_cols=146 Identities=21% Similarity=0.364 Sum_probs=136.5
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCCCC
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN 111 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~ 111 (207)
+.++|||+|||+++|+++|+++|+.|| |.++.+. +|||||+|.+.++|.+|++.+++..+.|+.|.|.+..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~------ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP------ 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC------
Confidence 468999999999999999999999999 9888886 6999999999999999999999999999999999864
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
+..+|||+|||+++++++|+++|+.||.|..+.+. +|+|||+|.+ ++|.+|+..|||..++|+.|.|.++
T Consensus 94 -~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 94 -TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp -CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred -CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 34689999999999999999999999999999886 5699999999 9999999999999999999999999
Q ss_pred cCccC
Q psy3721 183 TSRVR 187 (207)
Q Consensus 183 ~~~~~ 187 (207)
.+...
T Consensus 173 ~~~~~ 177 (284)
T 3smz_A 173 DAGQL 177 (284)
T ss_dssp CGGGC
T ss_pred CCCCC
Confidence 87654
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.9e-29 Score=202.31 Aligned_cols=149 Identities=26% Similarity=0.457 Sum_probs=137.4
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCC
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 109 (207)
..+.++|||+|||+++|+++|+++|+.||.|.++.+. +|||||+|.+.++|..|+..+++..+.|+.|.|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~--- 95 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH--- 95 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC---
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc---
Confidence 3566899999999999999999999999999999998 79999999999999999999999999999999999874
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHh-CCceeC---CeeE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKEL-NGMMVD---GKPM 177 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l-~g~~~~---g~~i 177 (207)
+.+|||+|||+.+++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+..| +|..+. |++|
T Consensus 96 ----~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 96 ----GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp ----SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred ----CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 5689999999999999999999999999999986 6799999999 9999999999 555555 9999
Q ss_pred EEEeccCccC
Q psy3721 178 KVQISTSRVR 187 (207)
Q Consensus 178 ~v~~~~~~~~ 187 (207)
.|.++.+...
T Consensus 172 ~v~~~~~~~~ 181 (261)
T 3sde_A 172 IVEPMEQFDD 181 (261)
T ss_dssp EEEECCCEES
T ss_pred EEeeccccCc
Confidence 9999987643
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.6e-29 Score=205.42 Aligned_cols=151 Identities=15% Similarity=0.357 Sum_probs=138.8
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCC-ceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYG-KVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g-~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
..++|||+|||+.+++++|+++|+.|| .|..+.+. +|||||+|.+.++|.+|+..+++..+.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 99998885 6899999999999999999999999999999999987
Q ss_pred cCCC------CCCCCceeeecCCCCC-CChhHHHHhcccCCcEEEEEEe---------cCEEEEEEcc-HhHHHHHHHhC
Q psy3721 106 SRKG------PNTPTTKVFVGNLSDN-TRAPEVRELFVPYGTVVECDIV---------RNYGFVHIDS-PDINKCIKELN 168 (207)
Q Consensus 106 ~~~~------~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~i~~~~~~---------~~~afv~f~~-e~a~~A~~~l~ 168 (207)
+... ...+..+|||+|||.+ +++++|+++|+.||.|..+++. +|+|||+|.+ ++|.+|+ .||
T Consensus 196 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~ 274 (292)
T 2ghp_A 196 PLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN 274 (292)
T ss_dssp CC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT
T ss_pred CCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc
Confidence 6543 2345789999999999 9999999999999999999986 3689999999 9999999 999
Q ss_pred CceeCCeeEEEEeccCc
Q psy3721 169 GMMVDGKPMKVQISTSR 185 (207)
Q Consensus 169 g~~~~g~~i~v~~~~~~ 185 (207)
|..++|+.|+|.|++++
T Consensus 275 g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 275 RSLLGNREISVSLADKK 291 (292)
T ss_dssp TEEETTEEEEEEECCCC
T ss_pred CCEECCcEEEEEEecCC
Confidence 99999999999999886
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=4.1e-29 Score=203.00 Aligned_cols=149 Identities=14% Similarity=0.349 Sum_probs=134.4
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
...+.++|||+|||+++|+++|+++|+.||.|.++.+. +|||||+|.+.++|.+|+ .+++..+.|+.|.|.++
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEEC
Confidence 34568999999999999999999999999999999987 479999999999999999 59999999999999987
Q ss_pred ccCCCCCCCCceeeecCCCCCCChhHHHHhcccCC-cEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCe
Q psy3721 105 TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG-TVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 175 (207)
Q Consensus 105 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~ 175 (207)
. ..+|||+|||..+++++|+++|+.|| .|..+.+. +|+|||+|.+ ++|.+|+..|||..+.|+
T Consensus 116 ~--------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 187 (292)
T 2ghp_A 116 T--------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGY 187 (292)
T ss_dssp C--------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred C--------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 4 67999999999999999999999999 99999985 6899999999 999999999999999999
Q ss_pred eEEEEeccCccCC
Q psy3721 176 PMKVQISTSRVRQ 188 (207)
Q Consensus 176 ~i~v~~~~~~~~~ 188 (207)
.|.|.++.+....
T Consensus 188 ~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 188 TLVTKVSNPLEKS 200 (292)
T ss_dssp ECEEEECCCC---
T ss_pred EEEEEECCCCccc
Confidence 9999999876543
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.88 E-value=1.6e-22 Score=149.04 Aligned_cols=117 Identities=22% Similarity=0.358 Sum_probs=106.8
Q ss_pred CCEEEEEeCChHHHHHHHHHh-cCCeeCCeeeEEEEcccC---------------CCCCCCCceeeecCCCCCCChhHHH
Q psy3721 69 KNYGFVHMENDEEGRTAIKEL-NGQIVNEKPLKIEAATSR---------------KGPNTPTTKVFVGNLSDNTRAPEVR 132 (207)
Q Consensus 69 ~~~~fV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~~~~~---------------~~~~~~~~~l~v~nl~~~~t~~~l~ 132 (207)
+|+++|+|.+.++|++|++.+ ++..+.| .+.+.++... .....+..+|||+|||+++++++|+
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~ 91 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELE 91 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHH
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 689999999999999999999 9999999 9999987642 2233467899999999999999999
Q ss_pred HhcccCCcEEEEEEe---cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCcc
Q psy3721 133 ELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186 (207)
Q Consensus 133 ~~f~~~g~i~~~~~~---~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 186 (207)
++|+.||.|.++++. +|||||+|.+ ++|.+|+..|||..++|++|+|.|+++++
T Consensus 92 ~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 92 RAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999997 7899999999 99999999999999999999999998864
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=4e-22 Score=140.61 Aligned_cols=97 Identities=30% Similarity=0.581 Sum_probs=70.2
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccC
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 107 (207)
+.++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.++.+.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 46789999999999999999999999999999987 579999999999999999999999999999999998765
Q ss_pred CCC-------CCCCceeeecCCCCCCChhH
Q psy3721 108 KGP-------NTPTTKVFVGNLSDNTRAPE 130 (207)
Q Consensus 108 ~~~-------~~~~~~l~v~nl~~~~t~~~ 130 (207)
... .....+|||+|||+++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 432 12345799999999998864
No 23
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=7.5e-22 Score=146.52 Aligned_cols=121 Identities=18% Similarity=0.280 Sum_probs=98.2
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEE-------EEccc-----CCCCCCCCceeeecCCCCCCChhHHHHhcc
Q psy3721 69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI-------EAATS-----RKGPNTPTTKVFVGNLSDNTRAPEVRELFV 136 (207)
Q Consensus 69 ~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v-------~~~~~-----~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~ 136 (207)
+|||||+|.++++|++|++.+++....+..+.+ ..... .........+|||+|||+++++++|+++|+
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~ 92 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFE 92 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 689999999999999999888754332222222 22111 112234578999999999999999999999
Q ss_pred cCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccCCC
Q psy3721 137 PYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189 (207)
Q Consensus 137 ~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~ 189 (207)
.||.|.++.+. +|||||+|.+ ++|.+|+..|||..++|++|+|.++++...+.
T Consensus 93 ~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 93 KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp HHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred hcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 99999999996 5699999999 99999999999999999999999999875433
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=122.85 Aligned_cols=73 Identities=30% Similarity=0.528 Sum_probs=68.8
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
.+.+|||+|||+++|+++|+++|+.||.|.++++. +|||||+|.+ ++|.+|+..|||..++|++|+|.|++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 46789999999999999999999999999999986 5699999999 99999999999999999999999998
Q ss_pred Cc
Q psy3721 184 SR 185 (207)
Q Consensus 184 ~~ 185 (207)
|.
T Consensus 98 PS 99 (99)
T 4fxv_A 98 PS 99 (99)
T ss_dssp BC
T ss_pred CC
Confidence 73
No 25
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.7e-19 Score=119.77 Aligned_cols=84 Identities=42% Similarity=0.725 Sum_probs=77.8
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccCC
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 188 (207)
...+..+|||+|||.++++++|+++|+.||.|..+.+.+++|||+|.+ ++|.+|+..|||..+.|+.|+|.+++++...
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCCC
Confidence 445678999999999999999999999999999999999999999999 9999999999999999999999999988776
Q ss_pred CCCCC
Q psy3721 189 RPGVD 193 (207)
Q Consensus 189 ~~~~~ 193 (207)
.++++
T Consensus 86 ~~~~~ 90 (92)
T 2dgt_A 86 ASGPS 90 (92)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 66544
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=6.8e-19 Score=120.76 Aligned_cols=73 Identities=23% Similarity=0.444 Sum_probs=68.6
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
..++|||+|||+++|+++|+++|+.||.|.++.+. +|||||+|.++++|++|++.|+|..+.|+.|+|.|+.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 35789999999999999999999999999999986 4699999999999999999999999999999999987
Q ss_pred c
Q psy3721 106 S 106 (207)
Q Consensus 106 ~ 106 (207)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 27
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=117.61 Aligned_cols=81 Identities=36% Similarity=0.746 Sum_probs=75.3
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccCCC
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~ 189 (207)
..+..+|||+|||.++++++|+++|+.||.|.++.+.++||||+|.+ ++|.+|+..|||..+.|+.|+|.+++++....
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 84 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKAS 84 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCCC
Confidence 45678999999999999999999999999999999999999999999 99999999999999999999999999876554
Q ss_pred CC
Q psy3721 190 PG 191 (207)
Q Consensus 190 ~~ 191 (207)
++
T Consensus 85 ~~ 86 (90)
T 2dnq_A 85 SG 86 (90)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 28
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=3.4e-19 Score=125.31 Aligned_cols=99 Identities=18% Similarity=0.276 Sum_probs=89.8
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-----CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccC
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-----~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 107 (207)
.+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|..|++.|+|..+.|+.|.|.++.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 567899999999999999999999999999999996 579999999999999999999999999999999999865
Q ss_pred CCCCCCCceeeecCCCCCCChhHHHHhcccCCc
Q psy3721 108 KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140 (207)
Q Consensus 108 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~ 140 (207)
... .+++...++++|.++|+.||.
T Consensus 86 ~~~---------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 86 RAF---------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHT---------TTSCHHHHHHHHHHHHHHHCC
T ss_pred hhh---------hhhhHhHhHHHHHHHHHHhCC
Confidence 432 567788889999999999983
No 29
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.7e-18 Score=114.81 Aligned_cols=79 Identities=41% Similarity=0.763 Sum_probs=74.5
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCCC
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP 110 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 110 (207)
..+.++|||+|||+++++++|+++|+.||.|.++.+.++||||+|.+.++|++|++.+++..+.|+.|+|.++.+....
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999876553
No 30
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.77 E-value=1.4e-18 Score=121.23 Aligned_cols=97 Identities=24% Similarity=0.555 Sum_probs=82.9
Q ss_pred CCeeeEEEEcccCC--CCCCCCceeeecCCCCC-CChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCc
Q psy3721 95 NEKPLKIEAATSRK--GPNTPTTKVFVGNLSDN-TRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGM 170 (207)
Q Consensus 95 ~g~~i~v~~~~~~~--~~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~ 170 (207)
.|..+.+..+.... .+.....+|||+|||.. +++++|+++|+.||.|..+.+.++||||+|.+ ++|.+|+..|||.
T Consensus 6 ~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~ 85 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGR 85 (110)
T ss_dssp CSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTC
T ss_pred CCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCC
Confidence 45666666655332 23345689999999999 99999999999999999999999999999999 9999999999999
Q ss_pred eeCCeeEEEEeccCccCCCCC
Q psy3721 171 MVDGKPMKVQISTSRVRQRPG 191 (207)
Q Consensus 171 ~~~g~~i~v~~~~~~~~~~~~ 191 (207)
.+.|+.|+|.++++....+++
T Consensus 86 ~~~g~~l~V~~a~~~~~~~~~ 106 (110)
T 1wf1_A 86 VLAGQTLDINMAGEPKPDRSG 106 (110)
T ss_dssp EETTEECCEEESCCCCSCCCC
T ss_pred EECCeEEEEEECCCCCCCCCC
Confidence 999999999999876555444
No 31
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=116.01 Aligned_cols=79 Identities=41% Similarity=0.725 Sum_probs=74.0
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccCC
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 188 (207)
...+..+|||+|||.++++++|+++|+.||.|.++.+.+++|||+|.+ ++|.+|+..|||..+.|+.|+|.++++...+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCCC
Confidence 345678999999999999999999999999999999999999999999 9999999999999999999999999987543
No 32
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.5e-18 Score=116.41 Aligned_cols=80 Identities=26% Similarity=0.477 Sum_probs=74.4
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccC--CcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccC
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPY--GTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVR 187 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~--g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~ 187 (207)
..+..+|||+|||..+++++|+++|+.| |.|.++.+.++||||+|.+ ++|.+|+..|||..+.|+.|+|.|++++.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 3467899999999999999999999999 9999999999999999999 999999999999999999999999998765
Q ss_pred CCC
Q psy3721 188 QRP 190 (207)
Q Consensus 188 ~~~ 190 (207)
...
T Consensus 92 ~~~ 94 (99)
T 2cpd_A 92 DSS 94 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 33
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.5e-18 Score=114.86 Aligned_cols=81 Identities=37% Similarity=0.664 Sum_probs=75.4
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCC
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 109 (207)
....+.++|||+|||+++++++|+++|+.||.|.++.+.++||||+|.+.++|++|++.|++..+.|+.|+|.++.++..
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred C
Q psy3721 110 P 110 (207)
Q Consensus 110 ~ 110 (207)
.
T Consensus 85 ~ 85 (92)
T 2dgt_A 85 T 85 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.1e-18 Score=114.59 Aligned_cols=81 Identities=44% Similarity=0.791 Sum_probs=75.2
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCCC
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP 110 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 110 (207)
.+.+.++|||+|||+++++++|+++|+.||.|.++.+.++||||+|.+.++|++|++.|++..+.|+.|+|.++.+....
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999876544
Q ss_pred C
Q psy3721 111 N 111 (207)
Q Consensus 111 ~ 111 (207)
.
T Consensus 85 ~ 85 (90)
T 2dnp_A 85 S 85 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 35
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.6e-18 Score=118.12 Aligned_cols=84 Identities=18% Similarity=0.328 Sum_probs=74.5
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCc--eeCCeeEEEEeccC
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGM--MVDGKPMKVQISTS 184 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~--~~~g~~i~v~~~~~ 184 (207)
..+++.+|||+|||+++++++|+++|++||.|.++.+. |++|||+|.+ ++|.+|+..|++. .+.|++|+|.|+++
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 34567899999999999999999999999999999988 7899999999 9999999998765 49999999999998
Q ss_pred ccCCCCCCC
Q psy3721 185 RVRQRPGVD 193 (207)
Q Consensus 185 ~~~~~~~~~ 193 (207)
+....++..
T Consensus 91 ~~~~~~~~~ 99 (104)
T 1wex_A 91 KRITRPGNS 99 (104)
T ss_dssp SSCCCSCCS
T ss_pred ccccCCCCC
Confidence 876665533
No 36
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=5.7e-18 Score=116.78 Aligned_cols=81 Identities=20% Similarity=0.450 Sum_probs=74.7
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccCCC
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~ 189 (207)
..+..+|||+|||.++++++|+++|+.||.|..+.+.++||||+|.+ ++|.+|+..|||..+.|+.|+|.|+++.....
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcccc
Confidence 34568999999999999999999999999999999999999999999 99999999999999999999999999876544
Q ss_pred CC
Q psy3721 190 PG 191 (207)
Q Consensus 190 ~~ 191 (207)
..
T Consensus 88 ~~ 89 (103)
T 2dgu_A 88 KE 89 (103)
T ss_dssp CC
T ss_pred hh
Confidence 33
No 37
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=2.3e-18 Score=121.20 Aligned_cols=77 Identities=25% Similarity=0.610 Sum_probs=69.8
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
...+|||+|||+++++++|+++|+.||.|.++++. +|||||+|.+ ++|.+|+..|||..++|+.|+|.+++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 35689999999999999999999999999999997 6799999999 9999999999999999999999999876
Q ss_pred cCCC
Q psy3721 186 VRQR 189 (207)
Q Consensus 186 ~~~~ 189 (207)
..+.
T Consensus 84 ~~~~ 87 (115)
T 4f25_A 84 KERE 87 (115)
T ss_dssp CC--
T ss_pred cccc
Confidence 5433
No 38
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.9e-18 Score=115.27 Aligned_cols=80 Identities=16% Similarity=0.301 Sum_probs=72.3
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHh--CCceeCCeeEEEEeccC
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKEL--NGMMVDGKPMKVQISTS 184 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l--~g~~~~g~~i~v~~~~~ 184 (207)
..+++.+|||+|||+.+++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+..| ++..+.|++|+|.|+++
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 44567899999999999999999999999999999988 6899999999 9999999976 57789999999999998
Q ss_pred ccCCC
Q psy3721 185 RVRQR 189 (207)
Q Consensus 185 ~~~~~ 189 (207)
+..+.
T Consensus 91 ~~~~~ 95 (101)
T 2cq1_A 91 KELKT 95 (101)
T ss_dssp SSCCC
T ss_pred ccCcC
Confidence 76554
No 39
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.4e-18 Score=116.50 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=74.1
Q ss_pred CCCCceeeecCCCCCCChhHHH----HhcccCCcEEEEEEe-----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVR----ELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~----~~f~~~g~i~~~~~~-----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
.....+|||+|||+++++++|+ ++|+.||.|.++++. ++||||+|.+ ++|.+|+..|||..++|+.|+|.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456899999999999999999 999999999999998 8899999999 99999999999999999999999
Q ss_pred eccCccCCCC
Q psy3721 181 ISTSRVRQRP 190 (207)
Q Consensus 181 ~~~~~~~~~~ 190 (207)
++++...+.+
T Consensus 86 ~a~~~~~~~~ 95 (96)
T 2dgx_A 86 LATGASGPSS 95 (96)
T ss_dssp ECCCSSCCCC
T ss_pred EcCCCCCCCC
Confidence 9988765554
No 40
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=119.34 Aligned_cols=89 Identities=20% Similarity=0.460 Sum_probs=79.3
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE---CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCCCC-
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN- 111 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~---~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~- 111 (207)
++|||+|||+++++++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.|++..+.|+.|+|.++.+.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 589999999999999999999999999999996 6799999999999999999999999999999999997754321
Q ss_pred --------CCCceeeecCCCC
Q psy3721 112 --------TPTTKVFVGNLSD 124 (207)
Q Consensus 112 --------~~~~~l~v~nl~~ 124 (207)
.....|||+||+.
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCCC
T ss_pred CCCCCccccCCCceecCCCCC
Confidence 1256899999973
No 41
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=2.5e-18 Score=128.54 Aligned_cols=116 Identities=19% Similarity=0.341 Sum_probs=70.8
Q ss_pred EEeCChHHHHHHHHHhcCCeeC--CeeeEEEEccc-------------------CCCCCCCCceeeecCCCCCCChhHHH
Q psy3721 74 VHMENDEEGRTAIKELNGQIVN--EKPLKIEAATS-------------------RKGPNTPTTKVFVGNLSDNTRAPEVR 132 (207)
Q Consensus 74 V~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~~~-------------------~~~~~~~~~~l~v~nl~~~~t~~~l~ 132 (207)
.+|.+.++|+.++..+++.... |+.....+... ......++.+|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6889999999999988887664 55555554211 11123346789999999999999999
Q ss_pred HhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccCCC
Q psy3721 133 ELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189 (207)
Q Consensus 133 ~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~ 189 (207)
.+|+.||.|..+.+. +|||||+|.+ ++|.+|+..|||..|.|+.|.|.|+.+....+
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999997 5799999999 99999999999999999999999998775443
No 42
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=6.6e-18 Score=114.57 Aligned_cols=81 Identities=26% Similarity=0.570 Sum_probs=74.3
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
.++.+|||+|||.++++++|+++|+.||.|..+.+. +++|||+|.+ ++|.+|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 457899999999999999999999999999999997 4699999999 9999999999999999999999999
Q ss_pred cCccCCCCCC
Q psy3721 183 TSRVRQRPGV 192 (207)
Q Consensus 183 ~~~~~~~~~~ 192 (207)
+++...+++.
T Consensus 83 ~~~~~~~~~~ 92 (95)
T 2dnz_A 83 TERLDGGSGP 92 (95)
T ss_dssp SCCCCCCCCC
T ss_pred ccccCCCCCC
Confidence 9887655443
No 43
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.9e-18 Score=115.97 Aligned_cols=82 Identities=22% Similarity=0.465 Sum_probs=75.1
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
+..+..+|||+|||.++++++|+++|+.||.|..+.+. ++||||+|.+ ++|.+|+..|||..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45567899999999999999999999999999999997 4599999999 99999999999999999999999
Q ss_pred eccCccCCCCC
Q psy3721 181 ISTSRVRQRPG 191 (207)
Q Consensus 181 ~~~~~~~~~~~ 191 (207)
|++++....+.
T Consensus 91 ~a~~~~~~~~~ 101 (103)
T 2cq0_A 91 WAKPSTNSGPS 101 (103)
T ss_dssp ESSCCCCSCCC
T ss_pred ECCCCCCCCCC
Confidence 99988766554
No 44
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.4e-18 Score=118.32 Aligned_cols=81 Identities=26% Similarity=0.539 Sum_probs=72.2
Q ss_pred CCCCceeeecCCCC-CCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccCC
Q psy3721 111 NTPTTKVFVGNLSD-NTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188 (207)
Q Consensus 111 ~~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 188 (207)
.++..+|||+|||. .+++++|+++|+.||.|.++.+.++||||+|.+ ++|.+|+..|||..+.|+.|+|.++++..++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNARP 86 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC-
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCCC
Confidence 45678999999998 999999999999999999999999999999999 9999999999999999999999999887655
Q ss_pred CCC
Q psy3721 189 RPG 191 (207)
Q Consensus 189 ~~~ 191 (207)
...
T Consensus 87 ~~~ 89 (96)
T 2kvi_A 87 QFD 89 (96)
T ss_dssp ---
T ss_pred CCC
Confidence 444
No 45
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-17 Score=114.56 Aligned_cols=82 Identities=26% Similarity=0.652 Sum_probs=75.1
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
...+..+|||+|||.++++++|+++|+.||.|.++.+. +++|||+|.+ ++|.+|+..|||..+.|+.|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 44567899999999999999999999999999999998 6799999999 9999999999999999999999999
Q ss_pred cCccCCCCC
Q psy3721 183 TSRVRQRPG 191 (207)
Q Consensus 183 ~~~~~~~~~ 191 (207)
+++....+.
T Consensus 91 ~~~~~~~~~ 99 (103)
T 2cq3_A 91 TARVMTNSG 99 (103)
T ss_dssp CSSCCCCCS
T ss_pred ccCCCCCCC
Confidence 987655443
No 46
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.6e-18 Score=117.00 Aligned_cols=83 Identities=22% Similarity=0.494 Sum_probs=75.2
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
...+..+|||+|||.++++++|+++|+.||.|..+.+. ++||||+|.+ ++|.+|+..|||..+.|+.|+|.|++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 34567899999999999999999999999999999997 5799999999 99999999999999999999999999
Q ss_pred CccCCCCCC
Q psy3721 184 SRVRQRPGV 192 (207)
Q Consensus 184 ~~~~~~~~~ 192 (207)
+..+.+++.
T Consensus 98 ~~~~~~~~~ 106 (109)
T 1x4a_A 98 SGRGTGSGP 106 (109)
T ss_dssp CCCCCCCCS
T ss_pred cCCCCCCCC
Confidence 886655443
No 47
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=3.1e-19 Score=129.23 Aligned_cols=117 Identities=19% Similarity=0.290 Sum_probs=74.6
Q ss_pred EEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe---
Q psy3721 71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 147 (207)
Q Consensus 71 ~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--- 147 (207)
++|.++.+...+..|+..+++....|+. ...+.. ...+..+..+|||+|||.++++++|+++|+.||.|..+.+.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~-~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~ 83 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGR-PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 83 (135)
T ss_dssp ------------------------------CCSCC-SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCS
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCC-CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence 5788899999999999998887765543 222222 22233457899999999999999999999999999999986
Q ss_pred -----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccCCC
Q psy3721 148 -----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189 (207)
Q Consensus 148 -----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~ 189 (207)
+|||||+|.+ ++|.+|+..|||..+.|+.|+|.|+++.....
T Consensus 84 ~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 84 YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp SSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred CCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 5699999999 99999999999999999999999999875443
No 48
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=116.56 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=70.9
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCce--eCCeeEEEEeccC
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMM--VDGKPMKVQISTS 184 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~--~~g~~i~v~~~~~ 184 (207)
..+++.+|||+|||+++++++|+++|++||.|.++++. ||+|||+|.+ ++|.+|+..|+|.. +.|++|.|.|+++
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 44678899999999999999999999999999999997 7899999999 99999999999886 7899999999987
Q ss_pred c
Q psy3721 185 R 185 (207)
Q Consensus 185 ~ 185 (207)
+
T Consensus 97 k 97 (100)
T 3r27_A 97 Q 97 (100)
T ss_dssp S
T ss_pred c
Confidence 5
No 49
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=3.9e-18 Score=113.07 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=68.6
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccC
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTS 184 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~ 184 (207)
.+..|||+||++++|+++|+++|.+||+|.++.+. +|||||+|.+ ++|.+|+..|||+.++|++|+|.++++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 46789999999999999999999999999999987 8999999999 999999999999999999999999964
No 50
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=6.3e-18 Score=115.44 Aligned_cols=77 Identities=25% Similarity=0.537 Sum_probs=72.2
Q ss_pred CCCCCceeeecCCCC-CCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCcc
Q psy3721 110 PNTPTTKVFVGNLSD-NTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 186 (207)
..+++.+|||+|||. ++++++|+++|+.||.|.++.+.+|||||+|.+ ++|.+|+..|||..++|+.|+|.+++++.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 345678999999998 999999999999999999999999999999999 99999999999999999999999998764
No 51
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.4e-18 Score=117.38 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=72.4
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcC--CeeCCeeeEEEEccc
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNG--QIVNEKPLKIEAATS 106 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~~~~ 106 (207)
.+.+.++|||+|||+++|+++|+++|++||.|.++.+. +|||||+|.+.++|..|++.+++ ..+.|+.|+|.++..
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 34577899999999999999999999999999999998 68999999999999999998864 789999999999987
Q ss_pred CCCC
Q psy3721 107 RKGP 110 (207)
Q Consensus 107 ~~~~ 110 (207)
+...
T Consensus 92 ~~~~ 95 (105)
T 1sjq_A 92 KELK 95 (105)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6543
No 52
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-17 Score=113.30 Aligned_cols=79 Identities=27% Similarity=0.487 Sum_probs=73.9
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcC--CceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCC
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKY--GKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~--g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 109 (207)
..+.++|||+|||+.+++++|+++|+.| |.|.++.+.++||||+|.+.++|++|++.|++..+.|+.|+|.++.+...
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 3567899999999999999999999999 99999999999999999999999999999999999999999999987654
Q ss_pred C
Q psy3721 110 P 110 (207)
Q Consensus 110 ~ 110 (207)
.
T Consensus 92 ~ 92 (99)
T 2cpd_A 92 D 92 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 53
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=115.26 Aligned_cols=82 Identities=27% Similarity=0.607 Sum_probs=74.8
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
...+..+|||+|||+++++++|+++|+.||.|..+.+. ++||||+|.+ ++|.+|+..|||..+.|+.|+|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 44567899999999999999999999999999999997 6799999999 9999999999999999999999999
Q ss_pred cCccCCCCC
Q psy3721 183 TSRVRQRPG 191 (207)
Q Consensus 183 ~~~~~~~~~ 191 (207)
+++..+.+.
T Consensus 91 ~~~~~~~~~ 99 (103)
T 2d9p_A 91 QRKEERQSG 99 (103)
T ss_dssp SSCCCCCCC
T ss_pred cccccCCCC
Confidence 987655443
No 54
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=118.32 Aligned_cols=78 Identities=19% Similarity=0.397 Sum_probs=71.3
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhC--CceeCCeeEEEEeccCc
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELN--GMMVDGKPMKVQISTSR 185 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~--g~~~~g~~i~v~~~~~~ 185 (207)
+.+..+|||+|||+++++++|+++|++||.|.++++. ||||||+|.+ ++|.+|+..|+ +..+.|++|+|.|++++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 4567899999999999999999999999999999998 7899999999 99999999886 47899999999999886
Q ss_pred cCC
Q psy3721 186 VRQ 188 (207)
Q Consensus 186 ~~~ 188 (207)
...
T Consensus 93 ~~~ 95 (105)
T 1sjq_A 93 ELK 95 (105)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 55
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4e-18 Score=117.32 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=70.7
Q ss_pred CCCCCceeeecCCCC-CCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCc--eeCCeeEEEEecc
Q psy3721 110 PNTPTTKVFVGNLSD-NTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGM--MVDGKPMKVQIST 183 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~--~~~g~~i~v~~~~ 183 (207)
...++.+|||+|||+ ++++++|+++|++||.|.++.+. +++|||+|.+ ++|.+|+..||+. .+.|++|.|.|++
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 345688999999999 99999999999999999999998 5899999999 9999999998864 5999999999998
Q ss_pred CccC
Q psy3721 184 SRVR 187 (207)
Q Consensus 184 ~~~~ 187 (207)
....
T Consensus 91 ~~~~ 94 (102)
T 1x4d_A 91 KYKR 94 (102)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 7543
No 56
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=2e-17 Score=116.20 Aligned_cols=82 Identities=23% Similarity=0.524 Sum_probs=74.4
Q ss_pred CCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEE
Q psy3721 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179 (207)
Q Consensus 109 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v 179 (207)
.+..+..+|||+|||..+++++|+++|+.||.|..+.+. ++||||+|.+ ++|.+|+..|||..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567899999999999999999999999999999997 4699999999 9999999999999999999999
Q ss_pred EeccCccCCCC
Q psy3721 180 QISTSRVRQRP 190 (207)
Q Consensus 180 ~~~~~~~~~~~ 190 (207)
.|++++.....
T Consensus 90 ~~a~~~~~~~~ 100 (115)
T 2dgo_A 90 NWATRKPPAPK 100 (115)
T ss_dssp EESSCCCCCSC
T ss_pred EEccCCCCCCc
Confidence 99998765443
No 57
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-17 Score=114.46 Aligned_cols=82 Identities=27% Similarity=0.483 Sum_probs=74.7
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
...+..+|||+|||..+++++|+++|+.||.|..+.+. ++||||+|.+ ++|.+|+..|||..+.|+.|+|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 34567899999999999999999999999999999997 4799999999 9999999999999999999999999
Q ss_pred cCccCCCCC
Q psy3721 183 TSRVRQRPG 191 (207)
Q Consensus 183 ~~~~~~~~~ 191 (207)
+++......
T Consensus 91 ~~~~~~~~~ 99 (103)
T 2cqi_A 91 TTPSSQKSG 99 (103)
T ss_dssp CCTTCCCCC
T ss_pred CCCcccccC
Confidence 987655544
No 58
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=1.3e-17 Score=113.80 Aligned_cols=77 Identities=26% Similarity=0.460 Sum_probs=72.1
Q ss_pred CCCCcccEEEcCCCC-CCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccC
Q psy3721 31 SSVGTFKIFIGNVNP-GTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~-~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 107 (207)
...+.++|||+|||. ++++++|+++|+.||.|.++.+.+|||||+|.+.++|.+|++.+++..+.|+.|+|.++...
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 345678999999998 99999999999999999999999999999999999999999999999999999999998764
No 59
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=114.23 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=69.7
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCe--eCCeeeEEEEcccC
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQI--VNEKPLKIEAATSR 107 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~--~~g~~i~v~~~~~~ 107 (207)
.++++|||+|||.++|+++|+++|++||.|.++.+. +|||||+|.+.++|..|++.+++.. +.|+.|+|.+++.+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 457899999999999999999999999999999987 7999999999999999999999875 78999999999864
No 60
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.4e-18 Score=115.99 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=71.1
Q ss_pred CCCCcccEEEcCCCC-CCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCC--eeCCeeeEEEEcc
Q psy3721 31 SSVGTFKIFIGNVNP-GTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQ--IVNEKPLKIEAAT 105 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~-~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~--~~~g~~i~v~~~~ 105 (207)
...+.++|||+|||+ .+++++|+++|++||.|.++.++ ++||||+|.+.++|..|++.|++. .+.|+.|+|.++.
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 345678999999999 99999999999999999999998 589999999999999999998864 5999999999998
Q ss_pred cCCC
Q psy3721 106 SRKG 109 (207)
Q Consensus 106 ~~~~ 109 (207)
....
T Consensus 91 ~~~~ 94 (102)
T 1x4d_A 91 KYKR 94 (102)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 6543
No 61
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-17 Score=113.15 Aligned_cols=80 Identities=23% Similarity=0.418 Sum_probs=73.9
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEEC------CEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK------NYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~------~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
......++|||+|||+.+++++|+++|+.||.|.++.+.+ +||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456789999999999999999999999999999999974 8999999999999999999999999999999999
Q ss_pred cccCCC
Q psy3721 104 ATSRKG 109 (207)
Q Consensus 104 ~~~~~~ 109 (207)
+.+...
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987654
No 62
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=1e-17 Score=111.00 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=69.0
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
-.+..|||+||++.+|+++|+++|.+||+|.++.+. +|||||+|.++++|++|++.||+..+.|+.|+|..+.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356799999999999999999999999999999887 8999999999999999999999999999999999874
No 63
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.8e-17 Score=112.01 Aligned_cols=81 Identities=23% Similarity=0.480 Sum_probs=74.7
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
....+.++|||+|||+.+++++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445677999999999999999999999999999999998 67999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy3721 104 ATSRKGP 110 (207)
Q Consensus 104 ~~~~~~~ 110 (207)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876543
No 64
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=1.8e-17 Score=114.24 Aligned_cols=77 Identities=21% Similarity=0.453 Sum_probs=73.0
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCC
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 109 (207)
.+.++|||+|||+++++++|+++|+.||.|.++.+.++||||+|.+.++|++|++.|++..+.|+.|+|.++.+...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999987654
No 65
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=116.51 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=70.4
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
++..+|||+|||+++++++|+++|++||.|.++.+. +|||||+|.+ ++|.+|+..|||..++|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999986 6799999999 9999999999999999999999999
Q ss_pred cCcc
Q psy3721 183 TSRV 186 (207)
Q Consensus 183 ~~~~ 186 (207)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7654
No 66
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=7.3e-18 Score=117.38 Aligned_cols=79 Identities=24% Similarity=0.504 Sum_probs=72.7
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccCC
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 188 (207)
...+..+|||+|||.++++++|+++|+.||.|..+.+.+|||||+|.+ ++|.+|+..|||..++|+.|+|.|++++..+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~r 106 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAKR 106 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC--
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCCC
Confidence 345678999999999999999999999999999999999999999999 9999999999999999999999999987543
No 67
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=114.82 Aligned_cols=82 Identities=26% Similarity=0.430 Sum_probs=74.2
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
...+..+|||+|||.++++++|+++|+.||.|..+.+. +++|||+|.+ ++|.+|+..|||..+.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999996 5799999999 99999999999999999999999
Q ss_pred eccCccCCCCC
Q psy3721 181 ISTSRVRQRPG 191 (207)
Q Consensus 181 ~~~~~~~~~~~ 191 (207)
++++..+..+.
T Consensus 89 ~a~~~~~~~~~ 99 (103)
T 2dnm_A 89 VARYGRRDLSG 99 (103)
T ss_dssp ECSSCCSCCCC
T ss_pred ECCcCCCCCCC
Confidence 99987654443
No 68
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.4e-17 Score=112.59 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=71.2
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhc--CCeeCCeeeEEEEccc
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELN--GQIVNEKPLKIEAATS 106 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~~~~ 106 (207)
...+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|..|++.++ +..+.|+.|+|.++..
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 34567899999999999999999999999999999988 5899999999999999999774 6789999999999986
Q ss_pred CCC
Q psy3721 107 RKG 109 (207)
Q Consensus 107 ~~~ 109 (207)
...
T Consensus 91 ~~~ 93 (101)
T 2cq1_A 91 KEL 93 (101)
T ss_dssp SSC
T ss_pred ccC
Confidence 553
No 69
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=7.8e-18 Score=114.65 Aligned_cols=78 Identities=24% Similarity=0.423 Sum_probs=72.5
Q ss_pred CCCcccEEEcCCCC-CCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCC
Q psy3721 32 SVGTFKIFIGNVNP-GTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 32 ~~~~~~l~V~~lp~-~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 109 (207)
..+.++|||+|||+ .+++++|+++|+.||.|.++.+.+|||||+|.+.++|+.|++.|++..+.|+.|+|.++.....
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 45688999999998 9999999999999999999999999999999999999999999999999999999999976554
No 70
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=113.47 Aligned_cols=81 Identities=27% Similarity=0.485 Sum_probs=74.1
Q ss_pred CCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 109 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
....+..+|||+|||..+++++|+++|+.||.|..+.+. ++||||+|.+ ++|.+|+..|||..+.|+.|+|.|++++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 344567899999999999999999999999999999998 5899999999 9999999999999999999999999986
Q ss_pred cCCC
Q psy3721 186 VRQR 189 (207)
Q Consensus 186 ~~~~ 189 (207)
....
T Consensus 90 ~~~~ 93 (99)
T 2cpj_A 90 ASLT 93 (99)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 5443
No 71
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=114.90 Aligned_cols=83 Identities=29% Similarity=0.536 Sum_probs=75.1
Q ss_pred CCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEE
Q psy3721 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179 (207)
Q Consensus 109 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v 179 (207)
....+..+|||+|||.++++++|+++|+.||.|..+.+. ++||||+|.+ ++|.+|+..|||..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 344567899999999999999999999999999999996 4699999999 9999999999999999999999
Q ss_pred EeccCccCCCCC
Q psy3721 180 QISTSRVRQRPG 191 (207)
Q Consensus 180 ~~~~~~~~~~~~ 191 (207)
.++++.......
T Consensus 90 ~~a~~~~~~~~~ 101 (105)
T 1x5u_A 90 NKASAHNKNLSG 101 (105)
T ss_dssp EETTTTSCCCCC
T ss_pred EECCCCCcCCCC
Confidence 999988665443
No 72
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.1e-18 Score=114.98 Aligned_cols=82 Identities=20% Similarity=0.486 Sum_probs=74.0
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEE-EEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC-DIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~-~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
.++.+|||+|||.++++++|+++|+.||.|..+ ++. ++||||+|.+ ++|.+|+..|||..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999988 776 5799999999 999999999999999999999999
Q ss_pred ccCccCCCCCCC
Q psy3721 182 STSRVRQRPGVD 193 (207)
Q Consensus 182 ~~~~~~~~~~~~ 193 (207)
++++..++...+
T Consensus 83 a~~~~~~~~~~g 94 (96)
T 1x5t_A 83 AFKKDSKGSGPS 94 (96)
T ss_dssp SCCCCCCCCCCC
T ss_pred ecccCCCCCCCC
Confidence 998776554443
No 73
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=114.94 Aligned_cols=82 Identities=21% Similarity=0.475 Sum_probs=74.7
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
...+..+|||+|||..+++++|+++|+.||.|.++.+. ++||||+|.+ ++|.+|+..|||..+.|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999985 6799999999 99999999999999999999999
Q ss_pred eccCccCCCCC
Q psy3721 181 ISTSRVRQRPG 191 (207)
Q Consensus 181 ~~~~~~~~~~~ 191 (207)
++++...+.+.
T Consensus 88 ~a~~~~~~~~~ 98 (102)
T 2cqb_A 88 LAKPMRIKESG 98 (102)
T ss_dssp ECCCCCCCCCC
T ss_pred eCCCCCCCCCC
Confidence 99988655543
No 74
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=4.3e-17 Score=114.46 Aligned_cols=83 Identities=27% Similarity=0.549 Sum_probs=75.4
Q ss_pred CCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeee
Q psy3721 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPL 99 (207)
Q Consensus 28 ~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i 99 (207)
......+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455678999999999999999999999999999999987 3699999999999999999999999999999
Q ss_pred EEEEcccCCCC
Q psy3721 100 KIEAATSRKGP 110 (207)
Q Consensus 100 ~v~~~~~~~~~ 110 (207)
+|.++.+....
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999876554
No 75
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.2e-17 Score=112.89 Aligned_cols=81 Identities=28% Similarity=0.578 Sum_probs=74.5
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
....+.++|||+|||+.+++++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 344678999999999999999999999999999999998 57999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy3721 104 ATSRKGP 110 (207)
Q Consensus 104 ~~~~~~~ 110 (207)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9876654
No 76
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=111.36 Aligned_cols=74 Identities=26% Similarity=0.577 Sum_probs=67.4
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
.+..+|||+|||.++++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+..|||..++|+.|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 456899999999999999999999999999999996 4699999999 9999999999999999999999999
Q ss_pred cCc
Q psy3721 183 TSR 185 (207)
Q Consensus 183 ~~~ 185 (207)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 77
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=2.4e-17 Score=113.90 Aligned_cols=81 Identities=25% Similarity=0.505 Sum_probs=74.3
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCC---eeEEE
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDG---KPMKV 179 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g---~~i~v 179 (207)
..+..+|||+|||..+++++|+++|+.||.|..+.+. ++||||+|.+ ++|.+|+..|||..+.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 3567899999999999999999999999999999998 5799999999 99999999999999988 99999
Q ss_pred EeccCccCCCCC
Q psy3721 180 QISTSRVRQRPG 191 (207)
Q Consensus 180 ~~~~~~~~~~~~ 191 (207)
.|+++...+.+.
T Consensus 92 ~~a~~~~~~~~~ 103 (105)
T 2dnh_A 92 KFADTDKESGPS 103 (105)
T ss_dssp EESCSSCCCSCS
T ss_pred EECccCcccCCC
Confidence 999988765543
No 78
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.2e-17 Score=112.11 Aligned_cols=81 Identities=25% Similarity=0.560 Sum_probs=73.2
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
...+..+|||+|||..+++++|+++|+.||.|..+.+. ++||||+|.+ ++|.+|+. |||..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999996 5799999999 99999998 99999999999999
Q ss_pred eccCccCCCCC
Q psy3721 181 ISTSRVRQRPG 191 (207)
Q Consensus 181 ~~~~~~~~~~~ 191 (207)
+++++....+.
T Consensus 85 ~a~~~~~~~~~ 95 (99)
T 2dgs_A 85 RAEPRDSKSSG 95 (99)
T ss_dssp ECCCCCCCCCC
T ss_pred ECCCCcccCCC
Confidence 99987654443
No 79
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=112.82 Aligned_cols=80 Identities=28% Similarity=0.553 Sum_probs=72.8
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-----------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEE
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-----------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v 179 (207)
.+..+|||+|||.++++++|+++|+.||.|..+.+. ++||||+|.+ ++|.+|+..|||..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 457899999999999999999999999999999886 3699999999 9999999999999999999999
Q ss_pred EeccCccCCCCC
Q psy3721 180 QISTSRVRQRPG 191 (207)
Q Consensus 180 ~~~~~~~~~~~~ 191 (207)
.+++++...++.
T Consensus 83 ~~a~~~~~~~~~ 94 (98)
T 2cpf_A 83 RISERATKPASG 94 (98)
T ss_dssp ECSSCSSCCCCC
T ss_pred EEccCCCCCCCC
Confidence 999987655443
No 80
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-17 Score=111.26 Aligned_cols=80 Identities=19% Similarity=0.358 Sum_probs=72.7
Q ss_pred CCCCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCe
Q psy3721 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEK 97 (207)
Q Consensus 26 ~~~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~ 97 (207)
.++.....+.++|||+|||+.+++++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.|++..+.|+
T Consensus 7 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 86 (94)
T 2e5h_A 7 GMSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR 86 (94)
T ss_dssp CCCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 3445556678999999999999999999999999999999996 46999999999999999999999999999
Q ss_pred eeEEEEcc
Q psy3721 98 PLKIEAAT 105 (207)
Q Consensus 98 ~i~v~~~~ 105 (207)
.|+|.+++
T Consensus 87 ~l~v~~ak 94 (94)
T 2e5h_A 87 VIKASIAI 94 (94)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999874
No 81
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.9e-17 Score=113.10 Aligned_cols=83 Identities=19% Similarity=0.307 Sum_probs=75.4
Q ss_pred CCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeee
Q psy3721 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPL 99 (207)
Q Consensus 28 ~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i 99 (207)
+.....+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 34456678999999999999999999999999999999997 3599999999999999999999999999999
Q ss_pred EEEEcccCCCC
Q psy3721 100 KIEAATSRKGP 110 (207)
Q Consensus 100 ~v~~~~~~~~~ 110 (207)
+|.++.+....
T Consensus 88 ~v~~a~~~~~~ 98 (103)
T 2cq0_A 88 NVEWAKPSTNS 98 (103)
T ss_dssp EEEESSCCCCS
T ss_pred EEEECCCCCCC
Confidence 99999876654
No 82
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-17 Score=112.46 Aligned_cols=79 Identities=24% Similarity=0.415 Sum_probs=72.8
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
..+..+|||+|||.++++++|+++|+.||.|.++.+. ++||||+|.+ ++|.+|+..|||..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3457899999999999999999999999999999996 4799999999 999999999999999999999999
Q ss_pred ccCccCCC
Q psy3721 182 STSRVRQR 189 (207)
Q Consensus 182 ~~~~~~~~ 189 (207)
++++....
T Consensus 85 a~~~~~~~ 92 (99)
T 1whw_A 85 STIKKEAS 92 (99)
T ss_dssp CCCCSTTC
T ss_pred cCCCcccc
Confidence 99876543
No 83
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=2.4e-17 Score=108.95 Aligned_cols=74 Identities=28% Similarity=0.617 Sum_probs=69.5
Q ss_pred cccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
+++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 4689999999999999999999999999999987 57999999999999999999999999999999999986
Q ss_pred CC
Q psy3721 107 RK 108 (207)
Q Consensus 107 ~~ 108 (207)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 84
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=6.6e-17 Score=113.27 Aligned_cols=79 Identities=27% Similarity=0.442 Sum_probs=72.0
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
...+..+|||+|||+++++++|+++|..||.|.++.+. ++||||+|.+ ++|.+|+..|||..+.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 34567899999999999999999999999999999987 4699999999 999999999999999999999999
Q ss_pred ccCccCC
Q psy3721 182 STSRVRQ 188 (207)
Q Consensus 182 ~~~~~~~ 188 (207)
++....+
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9865443
No 85
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=1.7e-17 Score=116.64 Aligned_cols=82 Identities=24% Similarity=0.541 Sum_probs=74.2
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
..++..+|||+|||.++++++|+++|+.||.|.++++. ++||||+|.+ ++|.+|+..|||..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999987 4699999999 99999999999999999999999
Q ss_pred eccCccCCCCC
Q psy3721 181 ISTSRVRQRPG 191 (207)
Q Consensus 181 ~~~~~~~~~~~ 191 (207)
|++++....+.
T Consensus 101 ~a~~~~~~~~~ 111 (115)
T 2cpz_A 101 LKRSKNDSKSG 111 (115)
T ss_dssp CCCCSCCCCCC
T ss_pred EcCCCCcCCCC
Confidence 99988665543
No 86
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.3e-17 Score=113.26 Aligned_cols=78 Identities=12% Similarity=0.131 Sum_probs=70.6
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCC--eeCCeeeEEEEcccC
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQ--IVNEKPLKIEAATSR 107 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~--~~~g~~i~v~~~~~~ 107 (207)
..+.++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.+++. .+.|+.|+|.++..+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 4567899999999999999999999999999999988 689999999999999999988754 589999999999865
Q ss_pred CC
Q psy3721 108 KG 109 (207)
Q Consensus 108 ~~ 109 (207)
..
T Consensus 92 ~~ 93 (104)
T 1wex_A 92 RI 93 (104)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 87
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.7e-17 Score=113.66 Aligned_cols=78 Identities=17% Similarity=0.299 Sum_probs=72.9
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEec-CEEEEEEcc-HhHHHHHHHhCCceeCC-----eeEEEEeccC
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR-NYGFVHIDS-PDINKCIKELNGMMVDG-----KPMKVQISTS 184 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~-~~afv~f~~-e~a~~A~~~l~g~~~~g-----~~i~v~~~~~ 184 (207)
....+|||+|||+++++++|+++|+.||.|..+.+.+ +||||+|.+ ++|.+|+..|||..+.| +.|+|.++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 4578999999999999999999999999999999997 999999999 99999999999999999 9999999998
Q ss_pred ccCCC
Q psy3721 185 RVRQR 189 (207)
Q Consensus 185 ~~~~~ 189 (207)
+.+.+
T Consensus 93 ~~~~~ 97 (108)
T 1x4c_A 93 RSPSY 97 (108)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 75543
No 88
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=2.8e-17 Score=109.10 Aligned_cols=74 Identities=15% Similarity=0.407 Sum_probs=69.2
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
..+.++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999999884 68999999999999999999999999999999998
Q ss_pred cc
Q psy3721 104 AT 105 (207)
Q Consensus 104 ~~ 105 (207)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 89
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=113.08 Aligned_cols=77 Identities=21% Similarity=0.450 Sum_probs=71.9
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCceeC--CeeEEEEeccCc
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVD--GKPMKVQISTSR 185 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~~--g~~i~v~~~~~~ 185 (207)
..+..+|||+|||.++++++|+++|+.||.|.++.+. +++|||+|.+ ++|.+|+..|||..+. |+.|+|.|++++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 4557899999999999999999999999999999998 5699999999 9999999999999999 999999999987
Q ss_pred cC
Q psy3721 186 VR 187 (207)
Q Consensus 186 ~~ 187 (207)
+.
T Consensus 94 ~~ 95 (97)
T 1why_A 94 PS 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 90
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=114.86 Aligned_cols=80 Identities=19% Similarity=0.447 Sum_probs=73.8
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccC
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVR 187 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~ 187 (207)
.....+|||+|||.++++++|+++|+.||.|..+.+. ++||||+|.+ ++|.+|+..|||..+.|+.|+|.|++++..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 3457899999999999999999999999999999998 7999999999 999999999999999999999999998765
Q ss_pred CCC
Q psy3721 188 QRP 190 (207)
Q Consensus 188 ~~~ 190 (207)
..+
T Consensus 102 ~~~ 104 (109)
T 1x4g_A 102 MTS 104 (109)
T ss_dssp SCC
T ss_pred CCC
Confidence 443
No 91
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=115.20 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=70.1
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
.+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999986 579999999999999999999999999999999998
Q ss_pred ccC
Q psy3721 105 TSR 107 (207)
Q Consensus 105 ~~~ 107 (207)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 92
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.3e-17 Score=111.09 Aligned_cols=78 Identities=19% Similarity=0.470 Sum_probs=72.5
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeC--CeeeEEEEccc
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVN--EKPLKIEAATS 106 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~~~ 106 (207)
...+.++|||+|||+++++++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.|++..+. |+.|+|.++.+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 44567899999999999999999999999999999998 569999999999999999999999999 99999999987
Q ss_pred CC
Q psy3721 107 RK 108 (207)
Q Consensus 107 ~~ 108 (207)
+.
T Consensus 93 ~~ 94 (97)
T 1why_A 93 GP 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 93
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=3.6e-17 Score=109.24 Aligned_cols=75 Identities=25% Similarity=0.484 Sum_probs=70.0
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEE---------ECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDV---------VKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~---------~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
..++|||+|||+++++++|+++|+.||.|.++.+ .+|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4679999999999999999999999999999988 4789999999999999999999999999999999998
Q ss_pred ccCC
Q psy3721 105 TSRK 108 (207)
Q Consensus 105 ~~~~ 108 (207)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 94
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.7e-17 Score=112.00 Aligned_cols=79 Identities=22% Similarity=0.393 Sum_probs=72.7
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
...+..+|||+|||.++++++|+++|+.||.|.++.+. +++|||+|.+ ++|.+|+..|||..+.|+.|+|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999997 4899999999 999999999999999999999999
Q ss_pred ccCccCC
Q psy3721 182 STSRVRQ 188 (207)
Q Consensus 182 ~~~~~~~ 188 (207)
++++..+
T Consensus 93 a~~~~~~ 99 (100)
T 2do4_A 93 SNSGPSS 99 (100)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 9987543
No 95
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=3.2e-17 Score=115.16 Aligned_cols=81 Identities=25% Similarity=0.407 Sum_probs=73.5
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
...+.++|||+|||+++++++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999887 3699999999999999999999999999999999
Q ss_pred EcccCCCCC
Q psy3721 103 AATSRKGPN 111 (207)
Q Consensus 103 ~~~~~~~~~ 111 (207)
++.++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 998766543
No 96
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=1.9e-17 Score=111.60 Aligned_cols=79 Identities=23% Similarity=0.395 Sum_probs=73.0
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
..+..+|||+|||.++++++|+++|+.||.|..+.+. +++|||+|.+ ++|.+|+..|||..+.|+.|+|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3557899999999999999999999999999999997 5899999999 99999999999999999999999999
Q ss_pred CccCCC
Q psy3721 184 SRVRQR 189 (207)
Q Consensus 184 ~~~~~~ 189 (207)
+....+
T Consensus 85 ~~~~~~ 90 (92)
T 2dgv_A 85 NASGPS 90 (92)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 876544
No 97
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.2e-17 Score=111.60 Aligned_cols=77 Identities=21% Similarity=0.278 Sum_probs=72.1
Q ss_pred CCcccEEEcCCCCCCCHHHHH----HHhhcCCceEEEEEE-----CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 33 VGTFKIFIGNVNPGTSVELIR----PLFEKYGKVVECDVV-----KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~----~~f~~~g~i~~i~~~-----~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
.+.++|||+|||+.+++++|+ ++|+.||.|.++.+. ++||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346799999999999999999 999999999999998 78999999999999999999999999999999999
Q ss_pred cccCCC
Q psy3721 104 ATSRKG 109 (207)
Q Consensus 104 ~~~~~~ 109 (207)
+.+...
T Consensus 87 a~~~~~ 92 (96)
T 2dgx_A 87 ATGASG 92 (96)
T ss_dssp CCCSSC
T ss_pred cCCCCC
Confidence 986654
No 98
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.1e-17 Score=112.70 Aligned_cols=82 Identities=24% Similarity=0.425 Sum_probs=74.7
Q ss_pred CCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeee
Q psy3721 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPL 99 (207)
Q Consensus 28 ~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i 99 (207)
+.....+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34455678999999999999999999999999999999986 4699999999999999999999999999999
Q ss_pred EEEEcccCCC
Q psy3721 100 KIEAATSRKG 109 (207)
Q Consensus 100 ~v~~~~~~~~ 109 (207)
+|.++.+...
T Consensus 88 ~v~~a~~~~~ 97 (105)
T 1x5u_A 88 RVNKASAHNK 97 (105)
T ss_dssp EEEETTTTSC
T ss_pred EEEECCCCCc
Confidence 9999987654
No 99
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7e-17 Score=112.36 Aligned_cols=81 Identities=23% Similarity=0.447 Sum_probs=74.0
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-----CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-----~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
....+.++|||+|||+++++++|+++|+.||.|..+.+. ++||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 344567899999999999999999999999999999987 579999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy3721 105 TSRKGP 110 (207)
Q Consensus 105 ~~~~~~ 110 (207)
......
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876543
No 100
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.7e-17 Score=111.70 Aligned_cols=79 Identities=28% Similarity=0.430 Sum_probs=73.2
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
..+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999986 47999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy3721 104 ATSRKGP 110 (207)
Q Consensus 104 ~~~~~~~ 110 (207)
+.+....
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876553
No 101
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=3.3e-17 Score=109.43 Aligned_cols=74 Identities=24% Similarity=0.525 Sum_probs=69.3
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEE---------ecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI---------VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~---------~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
...+|||+|||.++++++|+++|+.||.|.++.+ .+|+|||+|.+ ++|.+|+..|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 3578999999999999999999999999999998 47899999999 9999999999999999999999999
Q ss_pred cCcc
Q psy3721 183 TSRV 186 (207)
Q Consensus 183 ~~~~ 186 (207)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 102
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.9e-17 Score=111.20 Aligned_cols=78 Identities=31% Similarity=0.494 Sum_probs=72.7
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCC
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 109 (207)
..+.++|||+|||+.+++++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.|++..+.|+.|+|.++.++..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 3567899999999999999999999999999999998 59999999999999999999999999999999999987553
No 103
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.73 E-value=2.4e-17 Score=114.75 Aligned_cols=78 Identities=18% Similarity=0.414 Sum_probs=73.0
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCC
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 109 (207)
..+.++|||+|||+++++++|+++|+.||.|.++.+.+|||||+|.+.++|++|++.|++..+.|+.|+|.++.....
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence 356789999999999999999999999999999999999999999999999999999999999999999999886543
No 104
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=114.94 Aligned_cols=84 Identities=23% Similarity=0.483 Sum_probs=74.4
Q ss_pred ccCCCCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE------CCEEEEEeCChHHHHHHHHHhcCCeeCCe
Q psy3721 24 CRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEK 97 (207)
Q Consensus 24 ~~~~~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~ 97 (207)
...++.......++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.+++..++|+
T Consensus 18 ~~S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 18 GSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp ----CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 334455566778999999999999999999999999999999997 68999999999999999999999999999
Q ss_pred eeEEEEcccC
Q psy3721 98 PLKIEAATSR 107 (207)
Q Consensus 98 ~i~v~~~~~~ 107 (207)
.|+|.++.++
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998764
No 105
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=117.43 Aligned_cols=80 Identities=19% Similarity=0.394 Sum_probs=72.2
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCC--ceeCCeeEEEEeccC
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNG--MMVDGKPMKVQISTS 184 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g--~~~~g~~i~v~~~~~ 184 (207)
..+++.+|||+|||+++++++|+++|++||.|.++++. +|+|||+|.+ ++|.+|+..|++ ..+.|++|+|.|+++
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 34567899999999999999999999999999999998 7899999999 999999999884 689999999999988
Q ss_pred ccCCC
Q psy3721 185 RVRQR 189 (207)
Q Consensus 185 ~~~~~ 189 (207)
+..+.
T Consensus 107 k~~~~ 111 (119)
T 2ad9_A 107 KELKT 111 (119)
T ss_dssp SSCCC
T ss_pred CCCCc
Confidence 75443
No 106
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=114.13 Aligned_cols=82 Identities=30% Similarity=0.588 Sum_probs=74.4
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
...+..+|||+|||.++++++|+++|+.||.|..+.+. ++||||+|.+ ++|.+|+..|||..+.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999996 4699999999 99999999999999999999999
Q ss_pred eccCccCCCCC
Q psy3721 181 ISTSRVRQRPG 191 (207)
Q Consensus 181 ~~~~~~~~~~~ 191 (207)
+++++...+.+
T Consensus 88 ~a~~~~~~~~~ 98 (102)
T 1x5s_A 88 QAGKSSDNRSG 98 (102)
T ss_dssp EEECCCCCCCC
T ss_pred ECCCCCCCCCC
Confidence 99987655443
No 107
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=5.2e-17 Score=111.24 Aligned_cols=79 Identities=22% Similarity=0.388 Sum_probs=72.8
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
....+.++|||+|||+.+++++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344667899999999999999999999999999999987 3799999999999999999999999999999999
Q ss_pred EcccCC
Q psy3721 103 AATSRK 108 (207)
Q Consensus 103 ~~~~~~ 108 (207)
++.+..
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 998654
No 108
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=6.1e-17 Score=109.76 Aligned_cols=78 Identities=26% Similarity=0.586 Sum_probs=72.3
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
.+.++|||+|||+++++++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 457899999999999999999999999999999997 369999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy3721 105 TSRKGP 110 (207)
Q Consensus 105 ~~~~~~ 110 (207)
..+...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876553
No 109
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=3.2e-17 Score=108.32 Aligned_cols=72 Identities=24% Similarity=0.545 Sum_probs=68.4
Q ss_pred ceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
.+|||+|||.++++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+..|||..++|+.|+|.+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 589999999999999999999999999999987 6799999999 9999999999999999999999999876
Q ss_pred c
Q psy3721 186 V 186 (207)
Q Consensus 186 ~ 186 (207)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 110
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.1e-17 Score=110.54 Aligned_cols=78 Identities=19% Similarity=0.362 Sum_probs=71.7
Q ss_pred CCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeE
Q psy3721 29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLK 100 (207)
Q Consensus 29 ~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 100 (207)
...+.+.++|||+|||+.+++++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445678999999999999999999999999999999987 46999999999999999999999999999999
Q ss_pred EEEccc
Q psy3721 101 IEAATS 106 (207)
Q Consensus 101 v~~~~~ 106 (207)
|.++.+
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999864
No 111
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.8e-17 Score=114.78 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=71.8
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhc--CCeeCCeeeEEEEccc
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELN--GQIVNEKPLKIEAATS 106 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~~~~ 106 (207)
...+.++|||+|||+++++++|+++|++||.|.++.+. +|||||+|.+.++|.+|++.++ +..+.|+.|+|.++..
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 34567899999999999999999999999999999998 6899999999999999999887 4689999999999986
Q ss_pred CCC
Q psy3721 107 RKG 109 (207)
Q Consensus 107 ~~~ 109 (207)
+..
T Consensus 107 k~~ 109 (119)
T 2ad9_A 107 KEL 109 (119)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 112
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.72 E-value=3.3e-17 Score=108.76 Aligned_cols=73 Identities=22% Similarity=0.530 Sum_probs=68.6
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
..+..+|||+|||.++++++|+++|+.||.|.++.+. +++|||+|.+ ++|.+|+..|||..++|+.|+|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999984 6799999999 999999999999999999999999
Q ss_pred cc
Q psy3721 182 ST 183 (207)
Q Consensus 182 ~~ 183 (207)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 113
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=112.27 Aligned_cols=81 Identities=22% Similarity=0.454 Sum_probs=73.9
Q ss_pred CCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeE
Q psy3721 29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLK 100 (207)
Q Consensus 29 ~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 100 (207)
.....+.++|||+|||+.+++++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3345668999999999999999999999999999999986 47999999999999999999999999999999
Q ss_pred EEEcccCCC
Q psy3721 101 IEAATSRKG 109 (207)
Q Consensus 101 v~~~~~~~~ 109 (207)
|.++.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dnm_A 87 VQVARYGRR 95 (103)
T ss_dssp EEECSSCCS
T ss_pred EEECCcCCC
Confidence 999986654
No 114
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=109.54 Aligned_cols=75 Identities=28% Similarity=0.598 Sum_probs=68.0
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
.+.++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 357899999999999999999999999999999987 369999999999999999999999999999999998
Q ss_pred ccC
Q psy3721 105 TSR 107 (207)
Q Consensus 105 ~~~ 107 (207)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 115
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.72 E-value=2.9e-18 Score=115.75 Aligned_cols=74 Identities=15% Similarity=0.342 Sum_probs=67.1
Q ss_pred CceeeecCCCCCCChhHHHHhcccCC-cEEEEEEe--------cCEEEEEEcc-HhHHHHHHHh-CCceeCCeeEEEEec
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYG-TVVECDIV--------RNYGFVHIDS-PDINKCIKEL-NGMMVDGKPMKVQIS 182 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g-~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l-~g~~~~g~~i~v~~~ 182 (207)
+++|||+|||+++|+++|+++|+.|| .|.+++++ +|||||+|.+ ++|.+|+..+ ++..++|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 79999886 6899999999 9999999987 466799999999999
Q ss_pred cCccC
Q psy3721 183 TSRVR 187 (207)
Q Consensus 183 ~~~~~ 187 (207)
.++++
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 88654
No 116
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=8.6e-17 Score=109.93 Aligned_cols=79 Identities=23% Similarity=0.463 Sum_probs=72.5
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
.....++|||+|||..+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++ +++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999996 5799999999999999998 99999999999999
Q ss_pred EcccCCCC
Q psy3721 103 AATSRKGP 110 (207)
Q Consensus 103 ~~~~~~~~ 110 (207)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99876553
No 117
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.3e-17 Score=113.18 Aligned_cols=81 Identities=22% Similarity=0.452 Sum_probs=73.8
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhC------CceeCC
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELN------GMMVDG 174 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~------g~~~~g 174 (207)
...+..+|||+|||+++++++|+++|+.||.|.++.+. ++||||+|.+ ++|.+|+..|| |..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999997 6799999999 99999999999 999999
Q ss_pred eeEEEEeccCccCCCC
Q psy3721 175 KPMKVQISTSRVRQRP 190 (207)
Q Consensus 175 ~~i~v~~~~~~~~~~~ 190 (207)
+.|+|.|++++.....
T Consensus 91 ~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAAS 106 (111)
T ss_dssp CEEEEECCCCCCCCCC
T ss_pred EEEEEEECCCCccCCC
Confidence 9999999998755443
No 118
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.72 E-value=5.9e-17 Score=112.94 Aligned_cols=77 Identities=32% Similarity=0.584 Sum_probs=72.0
Q ss_pred CCcccEEEcCCCCC-CCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCC
Q psy3721 33 VGTFKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 33 ~~~~~l~V~~lp~~-~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 109 (207)
...++|||+|||+. +++++|+++|+.||.|.++.+.++||||+|.+.++|++|++.|++..+.|+.|+|.++.....
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 34589999999999 999999999999999999999999999999999999999999999999999999999985443
No 119
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.4e-17 Score=107.76 Aligned_cols=75 Identities=17% Similarity=0.346 Sum_probs=69.8
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHh-cCCeeCCeeeEEEEcc
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKEL-NGQIVNEKPLKIEAAT 105 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~~~ 105 (207)
...+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.| ++..+.|+.|+|.|++
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34567899999999999999999999999999999998 599999999999999999988 9999999999999874
No 120
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.72 E-value=3.5e-17 Score=111.31 Aligned_cols=75 Identities=17% Similarity=0.426 Sum_probs=70.6
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
++++|||+|||.++++++|+++|+.||.|.++++. +|||||+|.+ ++|.+|+..|||..++|+.|+|.+++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46799999999999999999999999999999996 6799999999 99999999999999999999999999
Q ss_pred CccC
Q psy3721 184 SRVR 187 (207)
Q Consensus 184 ~~~~ 187 (207)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 8754
No 121
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.2e-17 Score=110.50 Aligned_cols=76 Identities=30% Similarity=0.495 Sum_probs=70.6
Q ss_pred CCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEE
Q psy3721 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179 (207)
Q Consensus 109 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v 179 (207)
....+..+|||+|||.++++++|+++|+.||.|.++.+. +++|||+|.+ ++|.+|+..|||..+.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345567899999999999999999999999999999996 5699999999 9999999999999999999999
Q ss_pred EeccC
Q psy3721 180 QISTS 184 (207)
Q Consensus 180 ~~~~~ 184 (207)
.|+++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99875
No 122
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=3.4e-17 Score=114.07 Aligned_cols=78 Identities=18% Similarity=0.367 Sum_probs=72.3
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
..++.+|||+|||..+++++|+++|+.||.|..+.+. +|+|||+|.+ ++|.+|+..|||..++|+.|+|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3457899999999999999999999999999999996 5799999999 999999999999999999999999
Q ss_pred ccCccCC
Q psy3721 182 STSRVRQ 188 (207)
Q Consensus 182 ~~~~~~~ 188 (207)
++++..+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9887543
No 123
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.7e-17 Score=112.31 Aligned_cols=82 Identities=26% Similarity=0.487 Sum_probs=74.3
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe---------cCEEEEEEcc-HhHHHHHHHh-CCceeCCeeEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---------RNYGFVHIDS-PDINKCIKEL-NGMMVDGKPMK 178 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~---------~~~afv~f~~-e~a~~A~~~l-~g~~~~g~~i~ 178 (207)
...+..+|||+|||..+++++|+++|+.||.|..+.+. ++||||+|.+ ++|.+|+..| ||..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 44567899999999999999999999999999999995 4699999999 9999999999 99999999999
Q ss_pred EEeccCccCCCCC
Q psy3721 179 VQISTSRVRQRPG 191 (207)
Q Consensus 179 v~~~~~~~~~~~~ 191 (207)
|.|++++.....+
T Consensus 91 v~~a~~~~~~~~~ 103 (107)
T 2cph_A 91 LEWADSEVTVQSG 103 (107)
T ss_dssp EEECCCCCCCCCS
T ss_pred EEeCCCCCCCCCC
Confidence 9999987655443
No 124
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=115.02 Aligned_cols=86 Identities=19% Similarity=0.253 Sum_probs=77.8
Q ss_pred cccCCCCCCCCCcccEEEcCCCCCCCHHHHH---HHhhcCCceEEEEEEC-----------CEEEEEeCChHHHHHHHHH
Q psy3721 23 SCRNMPGFSSVGTFKIFIGNVNPGTSVELIR---PLFEKYGKVVECDVVK-----------NYGFVHMENDEEGRTAIKE 88 (207)
Q Consensus 23 ~~~~~~~~~~~~~~~l~V~~lp~~~t~~~l~---~~f~~~g~i~~i~~~~-----------~~~fV~f~~~~~a~~a~~~ 88 (207)
+..+++.......++|||+|||+.+++++|+ ++|+.||.|.++.+.+ |||||+|.+.++|++|++.
T Consensus 3 s~s~~~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ 82 (111)
T 2cpi_A 3 SGSSGASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC 82 (111)
T ss_dssp SCSSCSCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHH
Confidence 4455666677788999999999999999999 9999999999999872 5999999999999999999
Q ss_pred hcCCeeCCeeeEEEEcccCC
Q psy3721 89 LNGQIVNEKPLKIEAATSRK 108 (207)
Q Consensus 89 l~~~~~~g~~i~v~~~~~~~ 108 (207)
|++..+.|+.|+|.++.++.
T Consensus 83 lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 83 VNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp HTTEEETTEEEEEESCCCCS
T ss_pred hCCCEECCEEEEEEeccccc
Confidence 99999999999999998765
No 125
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=1e-16 Score=110.71 Aligned_cols=79 Identities=29% Similarity=0.462 Sum_probs=72.7
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCC---eeeEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNE---KPLKI 101 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g---~~i~v 101 (207)
..+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|++..+.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 3567899999999999999999999999999999998 4799999999999999999999999988 99999
Q ss_pred EEcccCCCC
Q psy3721 102 EAATSRKGP 110 (207)
Q Consensus 102 ~~~~~~~~~ 110 (207)
.++......
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999876653
No 126
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=108.30 Aligned_cols=74 Identities=19% Similarity=0.472 Sum_probs=69.3
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHh-CCceeCCeeEEEEecc
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKEL-NGMMVDGKPMKVQIST 183 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l-~g~~~~g~~i~v~~~~ 183 (207)
...+..+|||+|||.++++++|+++|+.||.|.++.+. +++|||+|.+ ++|.+|+..| +|..+.|+.|+|.|++
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34567899999999999999999999999999999998 5999999999 9999999999 9999999999999985
No 127
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.9e-17 Score=112.48 Aligned_cols=78 Identities=27% Similarity=0.446 Sum_probs=72.2
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
...+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999999999999999987 4799999999999999999999999999999999
Q ss_pred EcccCC
Q psy3721 103 AATSRK 108 (207)
Q Consensus 103 ~~~~~~ 108 (207)
++.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998654
No 128
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.2e-17 Score=111.70 Aligned_cols=79 Identities=16% Similarity=0.446 Sum_probs=71.8
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe---------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~---------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v 179 (207)
+..+..+|||+|||+++++++|+++|+.|| |..+.+. ++||||+|.+ ++|.+|+ .|||..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 445678999999999999999999999999 9999986 5699999999 9999999 99999999999999
Q ss_pred EeccCccCCCC
Q psy3721 180 QISTSRVRQRP 190 (207)
Q Consensus 180 ~~~~~~~~~~~ 190 (207)
.+++++..+..
T Consensus 89 ~~a~~~~~~~~ 99 (104)
T 1wi8_A 89 DVADQAQDKDS 99 (104)
T ss_dssp EECCCCCCCCC
T ss_pred EEccCCCCCCC
Confidence 99998765543
No 129
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=110.69 Aligned_cols=77 Identities=25% Similarity=0.455 Sum_probs=70.7
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
....+.++|||+|||+.+++++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 344677999999999999999999999999999999997 4699999999999999999999999999999999
Q ss_pred Eccc
Q psy3721 103 AATS 106 (207)
Q Consensus 103 ~~~~ 106 (207)
++..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8763
No 130
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=8.2e-17 Score=110.86 Aligned_cols=79 Identities=20% Similarity=0.525 Sum_probs=71.4
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
+..+..+|||+|||.++++++|+++|+.|| |..+.+. +|||||+|.+ ++|.+|+ .|||..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 445678999999999999999999999997 9999987 5699999999 9999999 999999999999999
Q ss_pred eccCccCCCC
Q psy3721 181 ISTSRVRQRP 190 (207)
Q Consensus 181 ~~~~~~~~~~ 190 (207)
+++++.....
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2dng_A 89 IAEGRKQDKS 98 (103)
T ss_dssp ECCCCCCCCS
T ss_pred EecCCCCCCC
Confidence 9998765443
No 131
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=7e-17 Score=117.11 Aligned_cols=83 Identities=27% Similarity=0.446 Sum_probs=74.5
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
..+..+|||+|||.++++++|+++|+.||.|.++.+. +|||||+|.+ ++|.+|+..|||..+.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999996 6799999999 999999999999999999999999
Q ss_pred ccCccCCCCCCC
Q psy3721 182 STSRVRQRPGVD 193 (207)
Q Consensus 182 ~~~~~~~~~~~~ 193 (207)
++++..++...+
T Consensus 119 a~~~~~~~~~~~ 130 (139)
T 1u6f_A 119 AASGHQRPGIAG 130 (139)
T ss_dssp SSCCCCCCCSSC
T ss_pred CCCCCCCCCCCC
Confidence 998765544333
No 132
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=111.79 Aligned_cols=79 Identities=27% Similarity=0.407 Sum_probs=70.7
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCc-EEEEEEe-cCEEEEEEcc-HhHHHHHHHhCC-ceeCCeeEEEEeccCcc
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGT-VVECDIV-RNYGFVHIDS-PDINKCIKELNG-MMVDGKPMKVQISTSRV 186 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~-i~~~~~~-~~~afv~f~~-e~a~~A~~~l~g-~~~~g~~i~v~~~~~~~ 186 (207)
..+..+|||+|||.++++++|+++|+.||. |..+.+. ++||||+|.+ ++|.+|+..||| ..++|+.|+|.|++++.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 345689999999999999999999999998 6666655 8999999999 999999999999 99999999999999875
Q ss_pred CCC
Q psy3721 187 RQR 189 (207)
Q Consensus 187 ~~~ 189 (207)
.+.
T Consensus 85 ~~~ 87 (93)
T 2cqh_A 85 LRS 87 (93)
T ss_dssp CCC
T ss_pred ccC
Confidence 443
No 133
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1e-16 Score=111.48 Aligned_cols=77 Identities=16% Similarity=0.284 Sum_probs=72.5
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEEC-CEEEEEeCChHHHHHHHHHhcCCeeCC-----eeeEEEEccc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK-NYGFVHMENDEEGRTAIKELNGQIVNE-----KPLKIEAATS 106 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~-~~~fV~f~~~~~a~~a~~~l~~~~~~g-----~~i~v~~~~~ 106 (207)
...++|||+|||+++++++|+++|+.||.|..+.+.+ +||||+|.+.++|++|++.|++..+.| +.|+|.++.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 4578999999999999999999999999999999997 999999999999999999999999999 9999999987
Q ss_pred CCC
Q psy3721 107 RKG 109 (207)
Q Consensus 107 ~~~ 109 (207)
...
T Consensus 93 ~~~ 95 (108)
T 1x4c_A 93 RSP 95 (108)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 134
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.9e-17 Score=109.88 Aligned_cols=78 Identities=28% Similarity=0.574 Sum_probs=71.8
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-----------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEE
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-----------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 101 (207)
.+.++|||+|||+++++++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 457899999999999999999999999999998886 269999999999999999999999999999999
Q ss_pred EEcccCCCC
Q psy3721 102 EAATSRKGP 110 (207)
Q Consensus 102 ~~~~~~~~~ 110 (207)
.++.+....
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876553
No 135
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=5.8e-17 Score=110.21 Aligned_cols=75 Identities=21% Similarity=0.401 Sum_probs=70.5
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
++++|||+|||.++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.+++..+.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35799999999999999999999999999999986 5799999999999999999999999999999999998
Q ss_pred cCC
Q psy3721 106 SRK 108 (207)
Q Consensus 106 ~~~ 108 (207)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 136
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=4.4e-17 Score=114.85 Aligned_cols=78 Identities=24% Similarity=0.488 Sum_probs=72.0
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
....+|||+|||.++++++|+++|+.||.|..+.+. +|||||+|.+ ++|.+|+..|||..+.|+.|+|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 456899999999999999999999999999999997 3899999999 99999999999999999999999999
Q ss_pred CccCCC
Q psy3721 184 SRVRQR 189 (207)
Q Consensus 184 ~~~~~~ 189 (207)
+.....
T Consensus 85 ~~~~~~ 90 (116)
T 2fy1_A 85 KPSFQS 90 (116)
T ss_dssp CSSCSS
T ss_pred CCCCCC
Confidence 776443
No 137
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=114.98 Aligned_cols=79 Identities=16% Similarity=0.309 Sum_probs=70.9
Q ss_pred CCCCceeeecCCCCC-CChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhC--CceeCCeeEEEEeccC
Q psy3721 111 NTPTTKVFVGNLSDN-TRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELN--GMMVDGKPMKVQISTS 184 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~--g~~~~g~~i~v~~~~~ 184 (207)
..++.+|||+|||++ +++++|+++|+.||.|.++.+. +++|||+|.+ ++|.+|+..|| +..+.|++|+|.|++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 456889999999998 9999999999999999999998 6899999999 99999999886 4569999999999987
Q ss_pred ccCCC
Q psy3721 185 RVRQR 189 (207)
Q Consensus 185 ~~~~~ 189 (207)
..+..
T Consensus 102 ~~~~~ 106 (112)
T 1x4f_A 102 YKKLV 106 (112)
T ss_dssp CSSSS
T ss_pred ccccc
Confidence 65443
No 138
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=113.10 Aligned_cols=82 Identities=22% Similarity=0.505 Sum_probs=74.0
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhccc-CCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCce-eCCeeEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVP-YGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMM-VDGKPMKV 179 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~-~~g~~i~v 179 (207)
+..+..+|||+|||+++++++|+++|+. ||.|.++.+. ++||||+|.+ ++|.+|+..|||.. ++|+.|+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4456789999999999999999999999 9999999996 6799999999 99999999999999 99999999
Q ss_pred EeccCccCCCCC
Q psy3721 180 QISTSRVRQRPG 191 (207)
Q Consensus 180 ~~~~~~~~~~~~ 191 (207)
.+++++......
T Consensus 85 ~~a~~~~~~~~~ 96 (104)
T 2dhg_A 85 SVAIPKASRVKP 96 (104)
T ss_dssp CBCCCCCSCCCC
T ss_pred EEccCCCcCCCC
Confidence 999877654433
No 139
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.1e-17 Score=112.90 Aligned_cols=77 Identities=18% Similarity=0.399 Sum_probs=71.4
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
..++.+|||+|||.++++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+..|||..++|+.|+|.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3456899999999999999999999999999999997 5799999999 999999999999999999999999
Q ss_pred ccCccC
Q psy3721 182 STSRVR 187 (207)
Q Consensus 182 ~~~~~~ 187 (207)
+++++.
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 988643
No 140
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.9e-17 Score=111.86 Aligned_cols=78 Identities=24% Similarity=0.458 Sum_probs=73.1
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCC
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 109 (207)
....++|||+|||+.+++++|+++|+.||.|.++.+. ++||||+|.+.++|.+|++.|++..+.|+.|+|.|+.+...
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 3567899999999999999999999999999999998 69999999999999999999999999999999999987654
No 141
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.71 E-value=6.7e-17 Score=110.52 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=70.7
Q ss_pred CCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEE--------EEEE--------CCEEEEEeCChHHHHHHHHHhcC
Q psy3721 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE--------CDVV--------KNYGFVHMENDEEGRTAIKELNG 91 (207)
Q Consensus 28 ~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~--------i~~~--------~~~~fV~f~~~~~a~~a~~~l~~ 91 (207)
+...+...++|||+|||+++++++|+++|+.||.|.+ +.+. +|||||+|.+.++|++|++.|++
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3345567899999999999999999999999999988 8876 46999999999999999999999
Q ss_pred CeeCCeeeEEEEcc
Q psy3721 92 QIVNEKPLKIEAAT 105 (207)
Q Consensus 92 ~~~~g~~i~v~~~~ 105 (207)
..+.|+.|+|.++.
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999863
No 142
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=7.9e-17 Score=112.10 Aligned_cols=77 Identities=26% Similarity=0.663 Sum_probs=71.5
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
+.+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.+++..+.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999987 46999999999999999999999999999999999
Q ss_pred cccCC
Q psy3721 104 ATSRK 108 (207)
Q Consensus 104 ~~~~~ 108 (207)
+.++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 88653
No 143
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=7.7e-18 Score=113.66 Aligned_cols=75 Identities=8% Similarity=0.192 Sum_probs=67.1
Q ss_pred cccEEEcCCCCCCCHHHHHHHhhcCC-ceEEEEEE--------CCEEEEEeCChHHHHHHHHHhc-CCeeCCeeeEEEEc
Q psy3721 35 TFKIFIGNVNPGTSVELIRPLFEKYG-KVVECDVV--------KNYGFVHMENDEEGRTAIKELN-GQIVNEKPLKIEAA 104 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~l~~~f~~~g-~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~-~~~~~g~~i~v~~~ 104 (207)
+.+|||+|||+++|+++|+++|+.|| .|.++.++ +|||||+|.+.++|++|++.++ +..++|+.|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 35899999999999999999999999 78888875 5899999999999999998874 56799999999999
Q ss_pred ccCCC
Q psy3721 105 TSRKG 109 (207)
Q Consensus 105 ~~~~~ 109 (207)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 144
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=8.4e-17 Score=108.83 Aligned_cols=74 Identities=22% Similarity=0.431 Sum_probs=69.1
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
..++..+|||+|||.++++++|+++|+.||.|..+.+. +++|||+|.+ ++|.+|+..|||..+.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999996 4699999999 99999999999999999999999
Q ss_pred ecc
Q psy3721 181 IST 183 (207)
Q Consensus 181 ~~~ 183 (207)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 145
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.9e-17 Score=111.32 Aligned_cols=79 Identities=14% Similarity=0.366 Sum_probs=72.8
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
..+.++|||+|||+.+++++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 3467899999999999999999999999999999885 57999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy3721 104 ATSRKGP 110 (207)
Q Consensus 104 ~~~~~~~ 110 (207)
+.+....
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 146
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-16 Score=112.28 Aligned_cols=79 Identities=29% Similarity=0.569 Sum_probs=71.4
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
...+..+|||+|||.++++++|+++|+.||.|.++++. ++||||+|.+ ++|.+|+..+++ .+.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 44567899999999999999999999999999999997 4699999999 999999999999 8999999999
Q ss_pred eccCccCCC
Q psy3721 181 ISTSRVRQR 189 (207)
Q Consensus 181 ~~~~~~~~~ 189 (207)
++.+....+
T Consensus 92 ~a~~~~~~~ 100 (116)
T 2cqd_A 92 LAYLGAKPR 100 (116)
T ss_dssp ESTTTCCCC
T ss_pred EcccCCCcc
Confidence 998764433
No 147
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.9e-17 Score=109.51 Aligned_cols=78 Identities=26% Similarity=0.427 Sum_probs=70.1
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCc-eEEEEEE-CCEEEEEeCChHHHHHHHHHhcC-CeeCCeeeEEEEcccCC
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGK-VVECDVV-KNYGFVHMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRK 108 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~-i~~i~~~-~~~~fV~f~~~~~a~~a~~~l~~-~~~~g~~i~v~~~~~~~ 108 (207)
..+.++|||+|||+++++++|+++|+.||. |..+.+. ++||||+|.+.++|++|++.|++ ..+.|+.|+|.++.++.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 356789999999999999999999999999 6555544 89999999999999999999999 99999999999998765
Q ss_pred C
Q psy3721 109 G 109 (207)
Q Consensus 109 ~ 109 (207)
.
T Consensus 85 ~ 85 (93)
T 2cqh_A 85 L 85 (93)
T ss_dssp C
T ss_pred c
Confidence 4
No 148
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=7.7e-17 Score=108.59 Aligned_cols=77 Identities=22% Similarity=0.432 Sum_probs=71.9
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
.+.++|||+|||+++++++|+++|+.||.|..+.+. ++||||+|.+.++|++|++.|++..+.|+.|+|.++.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 467899999999999999999999999999999987 58999999999999999999999999999999999987
Q ss_pred CCC
Q psy3721 107 RKG 109 (207)
Q Consensus 107 ~~~ 109 (207)
...
T Consensus 86 ~~~ 88 (92)
T 2dgv_A 86 ASG 88 (92)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 149
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.7e-17 Score=111.04 Aligned_cols=79 Identities=27% Similarity=0.561 Sum_probs=72.7
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
..+.++|||+|||+++++++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567899999999999999999999999999999996 46999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy3721 104 ATSRKGP 110 (207)
Q Consensus 104 ~~~~~~~ 110 (207)
+.+....
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 150
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.4e-17 Score=110.21 Aligned_cols=78 Identities=26% Similarity=0.580 Sum_probs=71.6
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEE-EEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVEC-DVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i-~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
.+.++|||+|||+.+++++|+++|+.||.|.++ .+. ++||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999888 776 47999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy3721 104 ATSRKGP 110 (207)
Q Consensus 104 ~~~~~~~ 110 (207)
+.+....
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 151
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=9.9e-17 Score=112.09 Aligned_cols=76 Identities=28% Similarity=0.415 Sum_probs=70.8
Q ss_pred CCCceeeecCCCCCCChhHHH---HhcccCCcEEEEEEec-----------CEEEEEEcc-HhHHHHHHHhCCceeCCee
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVR---ELFVPYGTVVECDIVR-----------NYGFVHIDS-PDINKCIKELNGMMVDGKP 176 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~---~~f~~~g~i~~~~~~~-----------~~afv~f~~-e~a~~A~~~l~g~~~~g~~ 176 (207)
...++|||+|||+++++++|+ ++|+.||.|.++.+.+ |||||+|.+ ++|.+|+..|||..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 456799999999999999999 9999999999999971 599999999 9999999999999999999
Q ss_pred EEEEeccCccC
Q psy3721 177 MKVQISTSRVR 187 (207)
Q Consensus 177 i~v~~~~~~~~ 187 (207)
|+|.|++++..
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 99999998764
No 152
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=6.9e-17 Score=112.40 Aligned_cols=77 Identities=29% Similarity=0.597 Sum_probs=71.6
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
...+..+|||+|||..+++++|+++|+.||.|..+.+. +|||||+|.+ ++|.+|+..|||..+.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999987 5799999999 99999999999999999999999
Q ss_pred eccCcc
Q psy3721 181 ISTSRV 186 (207)
Q Consensus 181 ~~~~~~ 186 (207)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998764
No 153
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=4.8e-17 Score=112.52 Aligned_cols=82 Identities=18% Similarity=0.359 Sum_probs=73.8
Q ss_pred CCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCcee---CCee
Q psy3721 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMV---DGKP 176 (207)
Q Consensus 109 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~---~g~~ 176 (207)
....+..+|||+|||.++++++|+++|+.||.|.++.+. ++||||+|.+ ++|.+|+..|||..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 344567899999999999999999999999999999996 4799999999 999999999999998 8999
Q ss_pred EEEEeccCccCCCC
Q psy3721 177 MKVQISTSRVRQRP 190 (207)
Q Consensus 177 i~v~~~~~~~~~~~ 190 (207)
|+|.++++......
T Consensus 88 l~v~~a~~~~~~~~ 101 (106)
T 2dgp_A 88 IQVKPADSESRGGS 101 (106)
T ss_dssp CEEEECCCCSCCCC
T ss_pred EEEEECCcccccCC
Confidence 99999998765443
No 154
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=2e-17 Score=115.56 Aligned_cols=75 Identities=12% Similarity=0.186 Sum_probs=69.1
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCC-cEEEEEEe----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYG-TVVECDIV----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~i~~~~~~----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
....+|||+|||+++++++|+++|+.|| .|..+.+. +|||||+|.+ ++|.+|+..|||..+.|+.|+|.+++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3468999999999999999999999999 89999995 7999999999 9999999999999999999999999765
Q ss_pred c
Q psy3721 186 V 186 (207)
Q Consensus 186 ~ 186 (207)
+
T Consensus 106 p 106 (111)
T 2jvr_A 106 P 106 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 155
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.5e-17 Score=112.35 Aligned_cols=83 Identities=16% Similarity=0.232 Sum_probs=74.3
Q ss_pred CCCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceE--------EEEEE--------CCEEEEEeCChHHHHHHHHHhc
Q psy3721 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVV--------KNYGFVHMENDEEGRTAIKELN 90 (207)
Q Consensus 27 ~~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~--------~i~~~--------~~~~fV~f~~~~~a~~a~~~l~ 90 (207)
+........++|||+|||+.+++++|+++|+.||.|. .+.+. +|||||+|.+.++|++|++.|+
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 86 (113)
T 2cpe_A 7 GDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD 86 (113)
T ss_dssp CCCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred CCcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC
Confidence 3444566789999999999999999999999999998 57776 4699999999999999999999
Q ss_pred CCeeCCeeeEEEEcccCCC
Q psy3721 91 GQIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 91 ~~~~~g~~i~v~~~~~~~~ 109 (207)
+..+.|+.|+|.++.....
T Consensus 87 g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 87 GKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp TCEETTEECEEECSSCCCC
T ss_pred CCccCCCEEEEEECCCCCC
Confidence 9999999999999987654
No 156
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-16 Score=107.42 Aligned_cols=79 Identities=22% Similarity=0.415 Sum_probs=71.6
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCcc
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 186 (207)
...+..+|||+|+ ++++++|+++|+.||.|.++.+. +++|||+|.+ ++|.+|+..|||..+.|+.|+|.|++++.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 4456789999996 89999999999999999999997 7899999999 99999999999999999999999998875
Q ss_pred CCCC
Q psy3721 187 RQRP 190 (207)
Q Consensus 187 ~~~~ 190 (207)
...+
T Consensus 89 ~~~~ 92 (97)
T 1x5p_A 89 MLDS 92 (97)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 5443
No 157
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.70 E-value=7.3e-17 Score=117.01 Aligned_cols=81 Identities=26% Similarity=0.418 Sum_probs=73.9
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEE
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 101 (207)
......++|||+|||.++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344667899999999999999999999999999999986 569999999999999999999999999999999
Q ss_pred EEcccCCCC
Q psy3721 102 EAATSRKGP 110 (207)
Q Consensus 102 ~~~~~~~~~ 110 (207)
.++......
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 158
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.9e-17 Score=112.90 Aligned_cols=76 Identities=25% Similarity=0.657 Sum_probs=71.4
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
......+|||+|||.++++++|+++|+.||.|.++.+. +|||||+|.+ ++|.+|+..|||..++|+.|+|.++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34567899999999999999999999999999999997 7899999999 9999999999999999999999999
Q ss_pred cCc
Q psy3721 183 TSR 185 (207)
Q Consensus 183 ~~~ 185 (207)
+++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 875
No 159
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=3e-17 Score=112.64 Aligned_cols=74 Identities=18% Similarity=0.426 Sum_probs=69.9
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
....+|||+|||.++++++|+++|+.||.|.++++. ++||||+|.+ ++|.+|+..|||..++|+.|+|.|++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 346899999999999999999999999999999997 8899999999 9999999999999999999999999864
No 160
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.1e-17 Score=112.44 Aligned_cols=80 Identities=16% Similarity=0.349 Sum_probs=72.2
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEE--------EEEEe--------cCEEEEEEcc-HhHHHHHHHhCCcee
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVV--------ECDIV--------RNYGFVHIDS-PDINKCIKELNGMMV 172 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~--------~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~ 172 (207)
...+..+|||+|||.++++++|+++|+.||.|. .+++. ++||||+|.+ ++|.+|+..|||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999998 57776 5699999999 999999999999999
Q ss_pred CCeeEEEEeccCccCCC
Q psy3721 173 DGKPMKVQISTSRVRQR 189 (207)
Q Consensus 173 ~g~~i~v~~~~~~~~~~ 189 (207)
.|+.|+|.+++++....
T Consensus 91 ~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPMN 107 (113)
T ss_dssp TTEECEEECSSCCCCST
T ss_pred CCCEEEEEECCCCCCCC
Confidence 99999999999876543
No 161
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.5e-17 Score=111.74 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=70.4
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
+...++|||+|||.++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|+..|++..+.|+.|+|.|+.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3456899999999999999999999999999999997 79999999999999999999999999999999999875
No 162
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.70 E-value=2.4e-17 Score=112.13 Aligned_cols=73 Identities=22% Similarity=0.469 Sum_probs=65.9
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCc--EEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCc----eeCCee
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGT--VVECDIV--------RNYGFVHIDS-PDINKCIKELNGM----MVDGKP 176 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~--i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~----~~~g~~ 176 (207)
..-.+|||+|||+++|+++|+++|++||. +.++++. +|||||+|.+ ++|.+|+..|||. .++|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34579999999999999999999999995 6678775 6799999999 9999999999997 499999
Q ss_pred EEEEeccC
Q psy3721 177 MKVQISTS 184 (207)
Q Consensus 177 i~v~~~~~ 184 (207)
|.|.|+++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999986
No 163
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=3.7e-17 Score=114.25 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=70.2
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCC-ceEEEEEE----CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYG-KVVECDVV----KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g-~i~~i~~~----~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
+...++|||+|||+++++++|+++|+.|| .|..+.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.++..
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34678999999999999999999999999 89998885 79999999999999999999999999999999999875
Q ss_pred C
Q psy3721 107 R 107 (207)
Q Consensus 107 ~ 107 (207)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 164
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-16 Score=110.00 Aligned_cols=80 Identities=19% Similarity=0.364 Sum_probs=73.4
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhc------CCeeCC
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELN------GQIVNE 96 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~------~~~~~g 96 (207)
...+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.++ +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999986 5799999999999999999999 999999
Q ss_pred eeeEEEEcccCCCC
Q psy3721 97 KPLKIEAATSRKGP 110 (207)
Q Consensus 97 ~~i~v~~~~~~~~~ 110 (207)
+.|+|.++.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999876543
No 165
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=1.4e-16 Score=111.02 Aligned_cols=78 Identities=19% Similarity=0.376 Sum_probs=72.3
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
...+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999986 5799999999999999999999999999999999
Q ss_pred EcccCC
Q psy3721 103 AATSRK 108 (207)
Q Consensus 103 ~~~~~~ 108 (207)
++.+..
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 998654
No 166
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.5e-16 Score=108.99 Aligned_cols=80 Identities=23% Similarity=0.356 Sum_probs=73.4
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE---------CCEEEEEeCChHHHHHHHHHh-cCCeeCCeee
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---------KNYGFVHMENDEEGRTAIKEL-NGQIVNEKPL 99 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~---------~~~~fV~f~~~~~a~~a~~~l-~~~~~~g~~i 99 (207)
....+.++|||+|||+.+++++|+++|+.||.|..+.+. +|||||+|.+.++|++|+..| ++..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 345678999999999999999999999999999999985 469999999999999999999 9999999999
Q ss_pred EEEEcccCCC
Q psy3721 100 KIEAATSRKG 109 (207)
Q Consensus 100 ~v~~~~~~~~ 109 (207)
+|.++.+...
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987654
No 167
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=6.9e-17 Score=115.21 Aligned_cols=82 Identities=17% Similarity=0.370 Sum_probs=74.0
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
...+..+|||+|||..+++++|+++|+.||.|..+.+. +++|||+|.+ ++|.+|+..|||..+.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34557899999999999999999999999999999996 6799999999 99999999999999999999999
Q ss_pred eccCccCCCCC
Q psy3721 181 ISTSRVRQRPG 191 (207)
Q Consensus 181 ~~~~~~~~~~~ 191 (207)
|+.+...+...
T Consensus 98 ~a~~~~~~~~~ 108 (126)
T 3ex7_B 98 WCFVRGPPKGK 108 (126)
T ss_dssp ESEESSSCCC-
T ss_pred EecCCCCCCCC
Confidence 99877655443
No 168
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=9.7e-17 Score=109.17 Aligned_cols=76 Identities=18% Similarity=0.517 Sum_probs=71.1
Q ss_pred CCCCceeeecCCCCCCChhHHH----HhcccCCcEEEEEEe-----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVR----ELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~----~~f~~~g~i~~~~~~-----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
.+++.+|||+|||.++++++|+ ++|+.||.|.++.+. +|+|||+|.+ ++|.+|+..|||..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3567899999999999999999 999999999999987 7899999999 99999999999999999999999
Q ss_pred eccCcc
Q psy3721 181 ISTSRV 186 (207)
Q Consensus 181 ~~~~~~ 186 (207)
|++++.
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 998864
No 169
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=108.67 Aligned_cols=75 Identities=31% Similarity=0.556 Sum_probs=69.8
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
...+..+|||+|||..+++++|+++|+.||.|.++.+. +++|||+|.+ ++|.+|+..|||..+.|+.|+|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34557899999999999999999999999999999997 5699999999 999999999999999999999999
Q ss_pred ccC
Q psy3721 182 STS 184 (207)
Q Consensus 182 ~~~ 184 (207)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 875
No 170
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=1.3e-16 Score=108.48 Aligned_cols=77 Identities=19% Similarity=0.452 Sum_probs=71.6
Q ss_pred CCCcccEEEcCCCCCCCHHHHH----HHhhcCCceEEEEEE-----CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIR----PLFEKYGKVVECDVV-----KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~----~~f~~~g~i~~i~~~-----~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
..+.++|||+|||+++++++|+ ++|+.||.|.++.+. +|||||+|.+.++|..|++.|++..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3567899999999999999999 999999999999887 6999999999999999999999999999999999
Q ss_pred EcccCC
Q psy3721 103 AATSRK 108 (207)
Q Consensus 103 ~~~~~~ 108 (207)
++.+..
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 998754
No 171
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.70 E-value=6.3e-17 Score=110.02 Aligned_cols=76 Identities=18% Similarity=0.341 Sum_probs=67.0
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCc--eEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCC----eeCC
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGK--VVECDVV--------KNYGFVHMENDEEGRTAIKELNGQ----IVNE 96 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~--i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~----~~~g 96 (207)
....-.+|||+|||+.+|+++|+++|++||. +.++.+. +|||||+|.+.++|++|++.+++. .+.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3445678999999999999999999999996 4577765 579999999999999999999997 4899
Q ss_pred eeeEEEEccc
Q psy3721 97 KPLKIEAATS 106 (207)
Q Consensus 97 ~~i~v~~~~~ 106 (207)
+.|.|.++..
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999874
No 172
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.4e-17 Score=113.49 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=70.4
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccC
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 107 (207)
.+.++|||+|||+.+++++|+++|+.||.|.++.+. ++||||+|.+.++|+.|++.|++..+.|+.|+|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 356899999999999999999999999999999886 789999999999999999999999999999999998754
No 173
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=109.14 Aligned_cols=81 Identities=15% Similarity=0.287 Sum_probs=70.5
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEE----ecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccC
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI----VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTS 184 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~----~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~ 184 (207)
...+..+|||+|||.++++++|+++|+.||.|..+.. .++||||+|.+ ++|.+|+..|||..+.|+.|+|.|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 3456789999999999999999999999998843332 27899999999 999999999999999999999999998
Q ss_pred ccCCCC
Q psy3721 185 RVRQRP 190 (207)
Q Consensus 185 ~~~~~~ 190 (207)
+.+...
T Consensus 91 ~~~~~~ 96 (101)
T 2fc9_A 91 RGSPNS 96 (101)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 765443
No 174
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.69 E-value=9.2e-18 Score=112.94 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=62.8
Q ss_pred ceeeecCCCCCCChhHHHHhcccCC--cEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPYG--TVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~g--~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
.+|||+|||+++++++|+++|+.|| .|.++++. +|||||+|.+ ++|.+|+..|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999886 5699999999 99999999999999999999999999
Q ss_pred CccCCC
Q psy3721 184 SRVRQR 189 (207)
Q Consensus 184 ~~~~~~ 189 (207)
+.....
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 876544
No 175
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-16 Score=110.99 Aligned_cols=81 Identities=27% Similarity=0.446 Sum_probs=72.9
Q ss_pred CCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeE
Q psy3721 29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLK 100 (207)
Q Consensus 29 ~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 100 (207)
.......++|||+|||+.+++++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.+++ .+.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 3455678999999999999999999999999999999997 46999999999999999999998 89999999
Q ss_pred EEEcccCCCC
Q psy3721 101 IEAATSRKGP 110 (207)
Q Consensus 101 v~~~~~~~~~ 110 (207)
|.++.....+
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999765443
No 176
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=111.86 Aligned_cols=78 Identities=28% Similarity=0.520 Sum_probs=72.3
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEEC-------CEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK-------NYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~-------~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
....++|||+|||+++++++|+++|+.||.|.++.+.. |||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45678999999999999999999999999999999983 89999999999999999999999999999999999
Q ss_pred ccCCC
Q psy3721 105 TSRKG 109 (207)
Q Consensus 105 ~~~~~ 109 (207)
.....
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 86543
No 177
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=8.5e-17 Score=112.34 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=70.5
Q ss_pred CCCcccEEEcCCCCC-CCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcC--CeeCCeeeEEEEccc
Q psy3721 32 SVGTFKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNG--QIVNEKPLKIEAATS 106 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~-~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~~~~ 106 (207)
..+.++|||+|||++ +++++|+++|+.||.|.++.+. +|||||+|.+.++|..|++.|++ ..+.|+.|+|.++..
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 456889999999998 9999999999999999999998 68999999999999999998864 568999999999976
Q ss_pred CCC
Q psy3721 107 RKG 109 (207)
Q Consensus 107 ~~~ 109 (207)
...
T Consensus 102 ~~~ 104 (112)
T 1x4f_A 102 YKK 104 (112)
T ss_dssp CSS
T ss_pred ccc
Confidence 543
No 178
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2e-16 Score=108.58 Aligned_cols=82 Identities=20% Similarity=0.337 Sum_probs=70.7
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
...+..+|||+|||.++++++|+++|+.|+.+..+.-. ++||||+|.+ ++|.+|+..|||..+.|+.|+|.|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 45567899999999999999999999998755544432 5799999999 99999999999999999999999999
Q ss_pred CccCCCCC
Q psy3721 184 SRVRQRPG 191 (207)
Q Consensus 184 ~~~~~~~~ 191 (207)
++...+.+
T Consensus 91 ~~~~~~~~ 98 (102)
T 2fc8_A 91 PKGEGGSG 98 (102)
T ss_dssp CCCSSSCS
T ss_pred CCCCCCCC
Confidence 87655443
No 179
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=110.30 Aligned_cols=80 Identities=29% Similarity=0.497 Sum_probs=72.6
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
...+..+|||+|||+.+++++|+++|+.||.|..+.+. ++||||+|.+ ++|.+|+.. ||..+.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 34567899999999999999999999999999999997 4699999999 999999999 9999999999999
Q ss_pred eccCccCCCC
Q psy3721 181 ISTSRVRQRP 190 (207)
Q Consensus 181 ~~~~~~~~~~ 190 (207)
+++++....+
T Consensus 91 ~a~~~~~~~~ 100 (105)
T 2dh8_A 91 PCTPRGMQPS 100 (105)
T ss_dssp CSCCSSCCTT
T ss_pred EccCCCCCCC
Confidence 9998765444
No 180
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3e-16 Score=108.18 Aligned_cols=77 Identities=18% Similarity=0.400 Sum_probs=70.8
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE---------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~---------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
..+.++|||+|||+.+++++|+++|+.|| |.++.+. +|||||+|.+.++|++|+ .+++..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35679999999999999999999999999 9999886 469999999999999999 999999999999999
Q ss_pred EcccCCCC
Q psy3721 103 AATSRKGP 110 (207)
Q Consensus 103 ~~~~~~~~ 110 (207)
++.++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99876543
No 181
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=9.7e-17 Score=115.18 Aligned_cols=77 Identities=30% Similarity=0.512 Sum_probs=72.0
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
...+..+|||+|||+++++++|+++|+.||.|..+++. +|||||+|.+ ++|.+|+..|||..+.|+.|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999996 5799999999 99999999999999999999999
Q ss_pred eccCcc
Q psy3721 181 ISTSRV 186 (207)
Q Consensus 181 ~~~~~~ 186 (207)
|+++++
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998864
No 182
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=1.2e-16 Score=114.68 Aligned_cols=79 Identities=18% Similarity=0.374 Sum_probs=73.0
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEE
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 101 (207)
..+.+.++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 445678999999999999999999999999999999996 579999999999999999999999999999999
Q ss_pred EEcccCC
Q psy3721 102 EAATSRK 108 (207)
Q Consensus 102 ~~~~~~~ 108 (207)
.++.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9988654
No 183
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=114.41 Aligned_cols=77 Identities=17% Similarity=0.321 Sum_probs=70.2
Q ss_pred CCCcccEEEcCCCCCCCHHHHH----HHhhcCCceEEEEEE-----CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIR----PLFEKYGKVVECDVV-----KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~----~~f~~~g~i~~i~~~-----~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
..+.++|||+|||+.+++++|+ ++|+.||.|.++.+. +|||||+|.+.++|..|++.|+|..+.|+.|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3457899999999999999876 699999999999886 5899999999999999999999999999999999
Q ss_pred EcccCC
Q psy3721 103 AATSRK 108 (207)
Q Consensus 103 ~~~~~~ 108 (207)
|+..+.
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998654
No 184
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.69 E-value=1.6e-16 Score=109.88 Aligned_cols=81 Identities=27% Similarity=0.500 Sum_probs=73.4
Q ss_pred CCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCee---CCe
Q psy3721 29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIV---NEK 97 (207)
Q Consensus 29 ~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~---~g~ 97 (207)
.....+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.|++..+ .|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 3345678999999999999999999999999999999986 47999999999999999999999987 899
Q ss_pred eeEEEEcccCCC
Q psy3721 98 PLKIEAATSRKG 109 (207)
Q Consensus 98 ~i~v~~~~~~~~ 109 (207)
.|+|.++.....
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999987654
No 185
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=1.4e-16 Score=106.66 Aligned_cols=72 Identities=18% Similarity=0.430 Sum_probs=67.6
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccC
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTS 184 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~ 184 (207)
.++|||+|||.++++++|+++|+.||.|.++.+. +++|||+|.+ ++|.+|+ .|||..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4689999999999999999999999999999987 5699999999 9999999 9999999999999999987
Q ss_pred cc
Q psy3721 185 RV 186 (207)
Q Consensus 185 ~~ 186 (207)
..
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 53
No 186
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=109.32 Aligned_cols=78 Identities=19% Similarity=0.371 Sum_probs=71.3
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceE-EEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCee----
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVV-ECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKP---- 98 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~-~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~---- 98 (207)
....++|||+|||+++++++|+++|+.||.|. ++.+. +|||||+|.+.++|++|++.|++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34678999999999999999999999999998 99886 379999999999999999999999999999
Q ss_pred eEEEEcccCCC
Q psy3721 99 LKIEAATSRKG 109 (207)
Q Consensus 99 i~v~~~~~~~~ 109 (207)
|+|.|+.+...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999986543
No 187
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.69 E-value=1.5e-16 Score=112.21 Aligned_cols=74 Identities=26% Similarity=0.552 Sum_probs=68.5
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
+..+..+|||+|||+++++++|+++|+.||.|.++++. +|||||+|.+ ++|.+|+..|||..++|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999996 5799999999 99999999999999999999999
Q ss_pred ecc
Q psy3721 181 IST 183 (207)
Q Consensus 181 ~~~ 183 (207)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 975
No 188
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=110.59 Aligned_cols=83 Identities=23% Similarity=0.459 Sum_probs=74.2
Q ss_pred CCCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCee
Q psy3721 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKP 98 (207)
Q Consensus 27 ~~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~ 98 (207)
+......+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++. ++..+.|+.
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (105)
T 2dh8_A 8 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRN 86 (105)
T ss_dssp CCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEE
T ss_pred CCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 334456678999999999999999999999999999999987 36999999999999999988 999999999
Q ss_pred eEEEEcccCCCC
Q psy3721 99 LKIEAATSRKGP 110 (207)
Q Consensus 99 i~v~~~~~~~~~ 110 (207)
|+|.++.++...
T Consensus 87 l~V~~a~~~~~~ 98 (105)
T 2dh8_A 87 IDPKPCTPRGMQ 98 (105)
T ss_dssp EBCCCSCCSSCC
T ss_pred EEEEEccCCCCC
Confidence 999999876543
No 189
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=108.53 Aligned_cols=77 Identities=16% Similarity=0.346 Sum_probs=69.6
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE----CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV----KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~----~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
.....++|||+|||+.+++++|+++|+.||.|. +.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.++.+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 445678999999999999999999999999985 4444 79999999999999999999999999999999999986
Q ss_pred CC
Q psy3721 107 RK 108 (207)
Q Consensus 107 ~~ 108 (207)
+.
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 190
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.69 E-value=2.1e-17 Score=111.14 Aligned_cols=75 Identities=13% Similarity=0.245 Sum_probs=63.3
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcCC--ceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKYG--KVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~g--~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
.+|||+|||+++++++|+++|+.|| .|.++.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 89888886 4699999999999999999999999999999999988
Q ss_pred cCCCC
Q psy3721 106 SRKGP 110 (207)
Q Consensus 106 ~~~~~ 110 (207)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 191
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.69 E-value=2.2e-16 Score=109.32 Aligned_cols=74 Identities=26% Similarity=0.398 Sum_probs=69.7
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
..+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3567899999999999999999999999999999987 579999999999999999999999999999999987
Q ss_pred c
Q psy3721 105 T 105 (207)
Q Consensus 105 ~ 105 (207)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 192
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.7e-17 Score=113.80 Aligned_cols=82 Identities=17% Similarity=0.400 Sum_probs=72.8
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcE----EEEEEe----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV----VECDIV----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i----~~~~~~----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
...++.+|||+|||.++++++|+++|+.||.| ..+++. +|||||+|.+ ++|.+|+..|||..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999988 566655 6899999999 99999999999999999999999
Q ss_pred eccCccCCCCC
Q psy3721 181 ISTSRVRQRPG 191 (207)
Q Consensus 181 ~~~~~~~~~~~ 191 (207)
|+++...+.+.
T Consensus 101 ~a~~~~~~~~~ 111 (115)
T 2cpx_A 101 FGKNKKQRSSG 111 (115)
T ss_dssp ECCCCSCCCCC
T ss_pred EccCCCCCCCC
Confidence 99988665544
No 193
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.69 E-value=1.6e-16 Score=111.97 Aligned_cols=74 Identities=27% Similarity=0.447 Sum_probs=68.8
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
..+.++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4567999999999999999999999999999999996 57999999999999999999999999999999998
Q ss_pred cc
Q psy3721 104 AT 105 (207)
Q Consensus 104 ~~ 105 (207)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 194
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.69 E-value=6e-17 Score=116.50 Aligned_cols=96 Identities=17% Similarity=0.398 Sum_probs=77.6
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEE--EEEe--------cCEEEEEEccHhHHHHHHHhCCc----eeCCee
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE--CDIV--------RNYGFVHIDSPDINKCIKELNGM----MVDGKP 176 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~--~~~~--------~~~afv~f~~e~a~~A~~~l~g~----~~~g~~ 176 (207)
..+..+|||+|||+++++++|+++|+.||.|.. ++++ +|||||+|.+.+|.+|+..|||. .++|+.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIEAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHHHHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCHHHHHHHHHhcCCCCCccCCCEE
Confidence 346789999999999999999999999999966 7776 68999999998889999999999 999999
Q ss_pred EEEEeccCccCCCCCCCcccCCCCCccccc
Q psy3721 177 MKVQISTSRVRQRPGVDEVVIGQKSVPVQA 206 (207)
Q Consensus 177 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (207)
|+|.++++..+.............++++.|
T Consensus 100 l~V~~a~~~~~~~~~~~~~~~s~~s~as~a 129 (131)
T 2m2b_A 100 INVEFAKGSKRDMASNEGSRISAASVASTA 129 (131)
T ss_dssp CCCEECCCSCCCCCCCCCCCCCCCCCCCCC
T ss_pred EEEEECCCCCCCCCCCCCCccchhhhhhhh
Confidence 999999987554433333333334444443
No 195
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.5e-17 Score=109.67 Aligned_cols=78 Identities=21% Similarity=0.412 Sum_probs=71.4
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEE-EEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCee---
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVV-ECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKP--- 176 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~-~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~--- 176 (207)
...+..+|||+|||.++++++|+++|+.||.|. ++++. ++||||+|.+ ++|.+|+..|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345678999999999999999999999999999 99886 4799999999 9999999999999999999
Q ss_pred -EEEEeccCccC
Q psy3721 177 -MKVQISTSRVR 187 (207)
Q Consensus 177 -i~v~~~~~~~~ 187 (207)
|+|.|+++...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999988754
No 196
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.69 E-value=2.2e-16 Score=109.38 Aligned_cols=75 Identities=31% Similarity=0.512 Sum_probs=70.0
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
...+..+|||+|||+.+++++|+++|+.||.|..+.+. +++|||+|.+ ++|.+|+..|||..+.|+.|+|.+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 44567899999999999999999999999999999997 6799999999 999999999999999999999999
Q ss_pred ccC
Q psy3721 182 STS 184 (207)
Q Consensus 182 ~~~ 184 (207)
+++
T Consensus 105 a~s 107 (107)
T 3ulh_A 105 VTS 107 (107)
T ss_dssp ECC
T ss_pred eCC
Confidence 863
No 197
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=111.96 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=69.8
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCcc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 186 (207)
..++|||+|||+++++++|+++|+.||.|.++.+. +++|||+|.+ ++|.+|+..|||..+.|+.|.|.|++...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 35799999999999999999999999999999996 7899999999 99999999999999999999999998754
No 198
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=8e-17 Score=109.77 Aligned_cols=77 Identities=18% Similarity=0.408 Sum_probs=69.4
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccC
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTS 184 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~ 184 (207)
......+|||+|||+++++++|+++|+.||.|. +.+. ++||||+|.+ ++|.+|+..|||..++|+.|+|.++++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 344578999999999999999999999999986 5554 7899999999 999999999999999999999999988
Q ss_pred ccC
Q psy3721 185 RVR 187 (207)
Q Consensus 185 ~~~ 187 (207)
+.+
T Consensus 94 ~~~ 96 (97)
T 2e5j_A 94 QRD 96 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 199
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=108.74 Aligned_cols=74 Identities=23% Similarity=0.449 Sum_probs=68.6
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEE--------EEEe--------cCEEEEEEcc-HhHHHHHHHhCCcee
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE--------CDIV--------RNYGFVHIDS-PDINKCIKELNGMMV 172 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~--------~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~ 172 (207)
...+..+|||+|||.++++++|+++|+.||.|.. +++. +|+|||+|.+ ++|.+|+..|||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4556789999999999999999999999999998 8876 5699999999 999999999999999
Q ss_pred CCeeEEEEecc
Q psy3721 173 DGKPMKVQIST 183 (207)
Q Consensus 173 ~g~~i~v~~~~ 183 (207)
.|+.|+|.+++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999974
No 200
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=110.51 Aligned_cols=79 Identities=15% Similarity=0.307 Sum_probs=71.5
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCc-EEEEEEe---------cCEEEEEEcc-HhHHHHHHHhC--CceeCCeeE
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGT-VVECDIV---------RNYGFVHIDS-PDINKCIKELN--GMMVDGKPM 177 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~-i~~~~~~---------~~~afv~f~~-e~a~~A~~~l~--g~~~~g~~i 177 (207)
..+.++|||+|||.++++++|+++|..||. |.++.+. +|||||+|.+ ++|.+|+..|| +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999986 6799999999 99999999996 589999999
Q ss_pred EEEeccCccCCC
Q psy3721 178 KVQISTSRVRQR 189 (207)
Q Consensus 178 ~v~~~~~~~~~~ 189 (207)
+|.|++++....
T Consensus 85 ~V~~a~~~~~~~ 96 (109)
T 2dis_A 85 AVDWAEPEIDVD 96 (109)
T ss_dssp EEEESCSSCSTT
T ss_pred EEEEcCCCCCcC
Confidence 999999876543
No 201
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=1.1e-16 Score=112.30 Aligned_cols=77 Identities=18% Similarity=0.316 Sum_probs=71.7
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccC
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTS 184 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~ 184 (207)
+.++.+|||+|||.++++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+..|||..++|+.|+|.|+.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4557899999999999999999999999999999996 6799999999 999999999999999999999999987
Q ss_pred ccC
Q psy3721 185 RVR 187 (207)
Q Consensus 185 ~~~ 187 (207)
...
T Consensus 85 ~~~ 87 (115)
T 3lqv_A 85 NRA 87 (115)
T ss_dssp HHH
T ss_pred Chh
Confidence 654
No 202
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=3.3e-16 Score=111.42 Aligned_cols=79 Identities=23% Similarity=0.365 Sum_probs=73.0
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
.....++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.+++..+.|+.|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44667899999999999999999999999999999996 57999999999999999999999999999999999
Q ss_pred cccCCC
Q psy3721 104 ATSRKG 109 (207)
Q Consensus 104 ~~~~~~ 109 (207)
+.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987554
No 203
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=5.1e-16 Score=106.84 Aligned_cols=77 Identities=18% Similarity=0.434 Sum_probs=70.3
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
..+.++|||+|||+.+++++|+++|+.|| |.++.+. +|||||+|.+.++|++|+ .|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 35678999999999999999999999997 9999887 469999999999999999 8999999999999999
Q ss_pred cccCCCC
Q psy3721 104 ATSRKGP 110 (207)
Q Consensus 104 ~~~~~~~ 110 (207)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9876543
No 204
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=114.60 Aligned_cols=77 Identities=12% Similarity=0.319 Sum_probs=70.3
Q ss_pred CCCCCceeeecCCCCCCChhHHH----HhcccCCcEEEEEEe-----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVR----ELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~----~~f~~~g~i~~~~~~-----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v 179 (207)
...++.+|||+|||+.+++++|+ ++|+.||.|.+|.+. +|||||+|.+ ++|.+|+..|||..+.|++|+|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 34567899999999999999876 699999999999886 6899999999 9999999999999999999999
Q ss_pred EeccCcc
Q psy3721 180 QISTSRV 186 (207)
Q Consensus 180 ~~~~~~~ 186 (207)
.|++++.
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998764
No 205
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=5.5e-16 Score=108.55 Aligned_cols=76 Identities=22% Similarity=0.407 Sum_probs=70.6
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
....++|||+|||+.+++++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 3567899999999999999999999999999999987 469999999999999999999999999999999998
Q ss_pred ccC
Q psy3721 105 TSR 107 (207)
Q Consensus 105 ~~~ 107 (207)
...
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 754
No 206
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=3e-16 Score=115.98 Aligned_cols=78 Identities=23% Similarity=0.357 Sum_probs=72.0
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
.+..+|||+|||..+++++|+++|+.||.|..|.+. ++||||+|.+ ++|.+|+..|||..+.|+.|+|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999996 5799999999 9999999999999999999999999
Q ss_pred cCccCCC
Q psy3721 183 TSRVRQR 189 (207)
Q Consensus 183 ~~~~~~~ 189 (207)
++....+
T Consensus 117 ~~~~~~~ 123 (156)
T 1h2v_Z 117 AGFKEGR 123 (156)
T ss_dssp SCCCTTC
T ss_pred CCCCCcC
Confidence 8765433
No 207
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=109.52 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=68.5
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
....++|||+|||+++|+++|+++|+.||.|.++.++ +|||||+|.++++|..|+. +++..+.|+.|.|.+.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3456899999999999999999999999999999997 5899999999999999997 8999999999999987
Q ss_pred cc
Q psy3721 105 TS 106 (207)
Q Consensus 105 ~~ 106 (207)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 208
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=111.62 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=71.8
Q ss_pred CCCCceeee--cCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCcee-----CCeeEEEE
Q psy3721 111 NTPTTKVFV--GNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMV-----DGKPMKVQ 180 (207)
Q Consensus 111 ~~~~~~l~v--~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~-----~g~~i~v~ 180 (207)
..++.+||| +||++++++++|+++|++||.|.++.+. +|||||+|.+ ++|.+|+..|||..+ .|++|.|.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 456788999 7799999999999999999999999987 7899999999 999999999999998 78999999
Q ss_pred eccCccCCCC
Q psy3721 181 ISTSRVRQRP 190 (207)
Q Consensus 181 ~~~~~~~~~~ 190 (207)
|++.-+-..|
T Consensus 102 ~a~~~p~~~~ 111 (114)
T 2cq2_A 102 FVEKVQWSGP 111 (114)
T ss_dssp EESCCCCSSC
T ss_pred ecccCcccCC
Confidence 9986654444
No 209
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=8.1e-17 Score=110.47 Aligned_cols=75 Identities=28% Similarity=0.520 Sum_probs=70.1
Q ss_pred ceeeecCCCCCCChhHHHHhcccCCcEEEEEEe---cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccCCC
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~---~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~ 189 (207)
++|||+|||.++++++|+++|+.||.|..+.+. +++|||+|.+ ++|.+|+..|||..+.|+.|+|.++++..++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 79 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS 79 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc
Confidence 479999999999999999999999999999996 6799999999 99999999999999999999999999876543
No 210
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=2.8e-16 Score=105.14 Aligned_cols=73 Identities=21% Similarity=0.481 Sum_probs=68.3
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
+.++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|+ .+++..+.|+.|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 35799999999999999999999999999999987 469999999999999999 999999999999999987
Q ss_pred cC
Q psy3721 106 SR 107 (207)
Q Consensus 106 ~~ 107 (207)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 211
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=108.61 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=68.2
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
....++|||+|||+.+++++|+++|+.||.|..+.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4567899999999999999999999999998654443 58999999999999999999999999999999999
Q ss_pred cccC
Q psy3721 104 ATSR 107 (207)
Q Consensus 104 ~~~~ 107 (207)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8753
No 212
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=3.5e-16 Score=111.51 Aligned_cols=78 Identities=27% Similarity=0.440 Sum_probs=72.4
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
..+.++|||+|||+.+|+++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3457899999999999999999999999999999986 67999999999999999999999999999999999
Q ss_pred cccCCC
Q psy3721 104 ATSRKG 109 (207)
Q Consensus 104 ~~~~~~ 109 (207)
+.....
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 986654
No 213
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.67 E-value=4.5e-17 Score=139.11 Aligned_cols=75 Identities=24% Similarity=0.516 Sum_probs=70.4
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
.+..+|||+|||+.+|+++|+.+|..||.|..|.++ +|||||+|.+ ++|.+|+..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456799999999999999999999999999999996 6799999999 9999999999999999999999999
Q ss_pred cCcc
Q psy3721 183 TSRV 186 (207)
Q Consensus 183 ~~~~ 186 (207)
.+..
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8754
No 214
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=5.8e-17 Score=111.21 Aligned_cols=73 Identities=21% Similarity=0.258 Sum_probs=68.9
Q ss_pred CCceeeecCCCC------CCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCC-ee
Q psy3721 113 PTTKVFVGNLSD------NTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDG-KP 176 (207)
Q Consensus 113 ~~~~l~v~nl~~------~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g-~~ 176 (207)
.+++|||+|||+ ++++++|+++|+.||.|.++.++ +|||||+|.+ ++|.+|+..|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 367999999999 99999999999999999999986 6899999999 99999999999999999 99
Q ss_pred EEEEeccCc
Q psy3721 177 MKVQISTSR 185 (207)
Q Consensus 177 i~v~~~~~~ 185 (207)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999875
No 215
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.6e-17 Score=107.73 Aligned_cols=73 Identities=26% Similarity=0.503 Sum_probs=67.8
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
.+.++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|++..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 467899999999999999999999999999999987 579999999999999999999999999999988765
Q ss_pred c
Q psy3721 105 T 105 (207)
Q Consensus 105 ~ 105 (207)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 216
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=108.54 Aligned_cols=78 Identities=27% Similarity=0.575 Sum_probs=72.0
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhc-CCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCe-eCCeeeEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEK-YGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQI-VNEKPLKIE 102 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~-~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~-~~g~~i~v~ 102 (207)
+.+.++|||+|||+++++++|+++|+. ||.|.++.+. +|||||+|.+.++|.+|++.+++.. +.|+.|+|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 356789999999999999999999999 9999999986 5799999999999999999999999 999999999
Q ss_pred EcccCCC
Q psy3721 103 AATSRKG 109 (207)
Q Consensus 103 ~~~~~~~ 109 (207)
++.+...
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9976554
No 217
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.67 E-value=4.2e-16 Score=103.90 Aligned_cols=73 Identities=19% Similarity=0.455 Sum_probs=66.4
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
...+.++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++ +++..+.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999987 4699999999999999995 58888999999998
Q ss_pred Ec
Q psy3721 103 AA 104 (207)
Q Consensus 103 ~~ 104 (207)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 218
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=108.68 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=70.6
Q ss_pred CCCCCcccEEEcCCCCCC------CHHHHHHHhhcCCceEEEEEE------CCEEEEEeCChHHHHHHHHHhcCCeeCCe
Q psy3721 30 FSSVGTFKIFIGNVNPGT------SVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEK 97 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~------t~~~l~~~f~~~g~i~~i~~~------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~ 97 (207)
......++|||+|||+.+ ++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.|+|..+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 334457899999999999 789999999999999999987 58999999999999999999999999998
Q ss_pred -eeEEEEcccC
Q psy3721 98 -PLKIEAATSR 107 (207)
Q Consensus 98 -~i~v~~~~~~ 107 (207)
.|+|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998753
No 219
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.6e-16 Score=109.11 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=70.6
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCce----EEEEEE----CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKV----VECDVV----KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i----~~i~~~----~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
.+.++|||+|||+.+++++|+++|+.||.| ..+.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 457899999999999999999999999998 566655 689999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy3721 105 TSRKGP 110 (207)
Q Consensus 105 ~~~~~~ 110 (207)
.+....
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 876543
No 220
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=110.14 Aligned_cols=76 Identities=29% Similarity=0.568 Sum_probs=70.8
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
.+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.+++..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 356899999999999999999999999999999887 579999999999999999999999999999999999
Q ss_pred ccCC
Q psy3721 105 TSRK 108 (207)
Q Consensus 105 ~~~~ 108 (207)
.+..
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8654
No 221
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.5e-16 Score=104.66 Aligned_cols=76 Identities=22% Similarity=0.294 Sum_probs=69.5
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
+.....+|||+|||+++++++|+++|+.| .|..+.+. +|+|||+|.+ ++|.+|+. |||..++|+.|+|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 34557899999999999999999999999 89999886 5699999999 99999999 999999999999999
Q ss_pred ccCccC
Q psy3721 182 STSRVR 187 (207)
Q Consensus 182 ~~~~~~ 187 (207)
+++++.
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 988743
No 222
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.67 E-value=2.7e-16 Score=110.58 Aligned_cols=77 Identities=17% Similarity=0.319 Sum_probs=66.8
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEec-CEEEEEEcc-HhHHHHHHHhCCceeCCee-----EEEEeccCc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR-NYGFVHIDS-PDINKCIKELNGMMVDGKP-----MKVQISTSR 185 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~-~~afv~f~~-e~a~~A~~~l~g~~~~g~~-----i~v~~~~~~ 185 (207)
...+|||+|||+++++++|+++|+.||.|.++.+.+ +||||+|.+ ++|.+|+..|||..++|+. |+|..+.+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC--
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCC
Confidence 468999999999999999999999999999999987 999999999 9999999999999999998 777777765
Q ss_pred cCCC
Q psy3721 186 VRQR 189 (207)
Q Consensus 186 ~~~~ 189 (207)
...+
T Consensus 95 ~~~~ 98 (115)
T 3beg_B 95 SPSY 98 (115)
T ss_dssp --CC
T ss_pred CCCC
Confidence 4433
No 223
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.7e-16 Score=106.18 Aligned_cols=80 Identities=19% Similarity=0.318 Sum_probs=69.5
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEE----ECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDV----VKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~----~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
.+.+.++|||+|||+.+++++|+++|+.||.|.-+.. .++||||+|.+.++|++|++.|++..+.|+.|+|.++.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 3456899999999999999999999999998832221 168999999999999999999999999999999999987
Q ss_pred CCCC
Q psy3721 107 RKGP 110 (207)
Q Consensus 107 ~~~~ 110 (207)
....
T Consensus 91 ~~~~ 94 (101)
T 2fc9_A 91 RGSP 94 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 224
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=111.36 Aligned_cols=73 Identities=23% Similarity=0.411 Sum_probs=68.6
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccC
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTS 184 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~ 184 (207)
.++|||+|||.++++++|+++|+.||.|..+.+. +|||||+|.+ ++|.+|+ .|||..+.|+.|+|.++++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 4799999999999999999999999999999996 5799999999 9999999 9999999999999999987
Q ss_pred ccC
Q psy3721 185 RVR 187 (207)
Q Consensus 185 ~~~ 187 (207)
+..
T Consensus 104 ~~~ 106 (114)
T 2cq4_A 104 EKN 106 (114)
T ss_dssp HHH
T ss_pred Ccc
Confidence 653
No 225
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.66 E-value=1.5e-16 Score=109.16 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=68.7
Q ss_pred CcccEEEcCCCC------CCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCC-ee
Q psy3721 34 GTFKIFIGNVNP------GTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNE-KP 98 (207)
Q Consensus 34 ~~~~l~V~~lp~------~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g-~~ 98 (207)
..++|||+|||. .+++++|+++|+.||.|.++.++ +|||||+|.+.++|++|++.|++..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 99999999999999999999886 6899999999999999999999999999 99
Q ss_pred eEEEEccc
Q psy3721 99 LKIEAATS 106 (207)
Q Consensus 99 i~v~~~~~ 106 (207)
|+|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999865
No 226
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=107.91 Aligned_cols=75 Identities=15% Similarity=0.243 Sum_probs=67.7
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
.....+|||+|||+++++++|+++|..||.|..+.+. +++|||+|.+ ++|.+|+..|||..++|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3456899999999999999999999999988765443 6899999999 999999999999999999999999
Q ss_pred ccCc
Q psy3721 182 STSR 185 (207)
Q Consensus 182 ~~~~ 185 (207)
++.+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 9864
No 227
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.66 E-value=6.3e-16 Score=109.97 Aligned_cols=80 Identities=26% Similarity=0.477 Sum_probs=73.0
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
..++.+|||+|||..+++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+..|||..+.|+.|+|.++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 3457899999999999999999999999999999996 5799999999 9999999999999999999999999
Q ss_pred cCccCCCC
Q psy3721 183 TSRVRQRP 190 (207)
Q Consensus 183 ~~~~~~~~ 190 (207)
.+.....+
T Consensus 112 ~~~~~~~~ 119 (124)
T 2kt5_A 112 ASQIDLEH 119 (124)
T ss_dssp CCTTCCCC
T ss_pred CCCCCCCC
Confidence 88654443
No 228
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.7e-16 Score=109.27 Aligned_cols=77 Identities=26% Similarity=0.355 Sum_probs=69.3
Q ss_pred CCcccEEE--cCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCee-----CCeeeEEEE
Q psy3721 33 VGTFKIFI--GNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIV-----NEKPLKIEA 103 (207)
Q Consensus 33 ~~~~~l~V--~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~-----~g~~i~v~~ 103 (207)
.++++||| +||+.++++++|+++|++||.|.++.+. +|||||+|.+.++|++|++.|||..+ .|+.|.|.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 45778999 7799999999999999999999999887 68999999999999999999999988 688999988
Q ss_pred cccCCC
Q psy3721 104 ATSRKG 109 (207)
Q Consensus 104 ~~~~~~ 109 (207)
+.....
T Consensus 103 a~~~p~ 108 (114)
T 2cq2_A 103 VEKVQW 108 (114)
T ss_dssp ESCCCC
T ss_pred cccCcc
Confidence 775443
No 229
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.1e-17 Score=106.95 Aligned_cols=73 Identities=25% Similarity=0.465 Sum_probs=67.5
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
.++.+|||+|||.++++++|+++|+.||.|.++.+. +|||||+|.+ ++|.+|+..|||..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 457899999999999999999999999999999987 5799999999 9999999999999999999988776
Q ss_pred cC
Q psy3721 183 TS 184 (207)
Q Consensus 183 ~~ 184 (207)
++
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 230
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.8e-16 Score=108.48 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=70.9
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCc-eEEEEEE---------CCEEEEEeCChHHHHHHHHHhc--CCeeCCeeeE
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGK-VVECDVV---------KNYGFVHMENDEEGRTAIKELN--GQIVNEKPLK 100 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~-i~~i~~~---------~~~~fV~f~~~~~a~~a~~~l~--~~~~~g~~i~ 100 (207)
.+.++|||+|||+.+++++|+++|+.||. |.++.+. +|||||+|.+.++|.+|++.|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999886 5799999999999999999996 5899999999
Q ss_pred EEEcccCCC
Q psy3721 101 IEAATSRKG 109 (207)
Q Consensus 101 v~~~~~~~~ 109 (207)
|.++.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 231
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=8.8e-16 Score=105.38 Aligned_cols=83 Identities=16% Similarity=0.298 Sum_probs=70.8
Q ss_pred CCCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-----CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEE
Q psy3721 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101 (207)
Q Consensus 27 ~~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-----~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 101 (207)
-|.....+.++|||+|||+.+++++|+++|+.|+.+.-+... ++||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 7 GPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp TTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 344556778999999999999999999999988655433322 479999999999999999999999999999999
Q ss_pred EEcccCCC
Q psy3721 102 EAATSRKG 109 (207)
Q Consensus 102 ~~~~~~~~ 109 (207)
.++.++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99987654
No 232
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=4.2e-16 Score=110.78 Aligned_cols=75 Identities=16% Similarity=0.428 Sum_probs=69.4
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccC
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTS 184 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~ 184 (207)
..+|||+|||.++++++|+++|+.||.|.++.+. +|||||+|.+ ++|.+|+ .|||..++|+.|+|.++++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 5799999999999999999999999999999986 5799999999 9999999 8999999999999999987
Q ss_pred ccCCC
Q psy3721 185 RVRQR 189 (207)
Q Consensus 185 ~~~~~ 189 (207)
.....
T Consensus 115 ~~~~~ 119 (124)
T 2jwn_A 115 NMPGI 119 (124)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 65443
No 233
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-15 Score=104.57 Aligned_cols=78 Identities=22% Similarity=0.402 Sum_probs=69.6
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
...+..+|||+|||..+++++|+++|+.||.|..+.+. +|||||+|.+ ++|.+|+. ++..++|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34567899999999999999999999999999999997 4699999999 99999998 4789999999999
Q ss_pred eccCccCCC
Q psy3721 181 ISTSRVRQR 189 (207)
Q Consensus 181 ~~~~~~~~~ 189 (207)
++.++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqg_A 89 LPNSKQSQD 97 (103)
T ss_dssp CCCTTCCCC
T ss_pred ecCCCCcCC
Confidence 999875433
No 234
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=4.8e-16 Score=104.00 Aligned_cols=74 Identities=22% Similarity=0.364 Sum_probs=68.7
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCC
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 108 (207)
..++|||+|||+.+++++|+++|+.| .|.++.+. +|||||+|.++++|++|++.+++..+.|+.|+|.++....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 56899999999999999999999999 89888875 7999999999999999999999999999999999987543
No 235
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.66 E-value=8.7e-16 Score=102.36 Aligned_cols=72 Identities=26% Similarity=0.599 Sum_probs=65.6
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
...+..+|||+|||+++++++|+++|+.||.|..+.+. +|+|||+|.+ ++|.+|+.. ++..++|+.|+|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEE
Confidence 34567899999999999999999999999999999997 5699999999 999999954 8899999999998
Q ss_pred ec
Q psy3721 181 IS 182 (207)
Q Consensus 181 ~~ 182 (207)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 236
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.65 E-value=4.2e-16 Score=107.77 Aligned_cols=74 Identities=16% Similarity=0.288 Sum_probs=68.6
Q ss_pred CCCceeeecCCCCCC------ChhHHHHhcccCCcEEEEEEe------cCEEEEEEcc-HhHHHHHHHhCCceeCCe-eE
Q psy3721 112 TPTTKVFVGNLSDNT------RAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGK-PM 177 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~------t~~~l~~~f~~~g~i~~~~~~------~~~afv~f~~-e~a~~A~~~l~g~~~~g~-~i 177 (207)
...++|||+|||+.+ ++++|+++|+.||.|.++.+. +|||||+|.+ ++|.+|+..|||..++|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346799999999999 779999999999999999987 6899999999 999999999999999998 99
Q ss_pred EEEeccCc
Q psy3721 178 KVQISTSR 185 (207)
Q Consensus 178 ~v~~~~~~ 185 (207)
+|.++.+.
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99999764
No 237
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=7.7e-16 Score=110.03 Aligned_cols=73 Identities=14% Similarity=0.261 Sum_probs=67.5
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEEEe---cCE-EEEEEcc-HhHHHHHHHhCCceeCC--eeEEEEeccCcc
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNY-GFVHIDS-PDINKCIKELNGMMVDG--KPMKVQISTSRV 186 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~---~~~-afv~f~~-e~a~~A~~~l~g~~~~g--~~i~v~~~~~~~ 186 (207)
...|||+||++.+|+++|+++|++||.|.++.+. +++ |||+|.+ ++|.+|+..|||..+.| +.|+|.|+++..
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 4578899999999999999999999999999887 466 9999999 99999999999999988 899999999763
No 238
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.4e-15 Score=102.35 Aligned_cols=76 Identities=24% Similarity=0.387 Sum_probs=70.4
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCC
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 109 (207)
..+.++|||+|+ ++++++|+++|+.||.|.++.+. ++||||+|.+.++|.+|+..|++..+.|+.|+|.++.+...
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 456789999996 89999999999999999999987 78999999999999999999999999999999999987654
No 239
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.1e-16 Score=103.41 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=69.5
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
.....++|||+|||+++++++|+++|+.| .|.++.+. +|||||+|.+.++|++|++ +++..+.|+.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 34567899999999999999999999999 89888887 4699999999999999999 999999999999999
Q ss_pred cccCC
Q psy3721 104 ATSRK 108 (207)
Q Consensus 104 ~~~~~ 108 (207)
+.+..
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 88654
No 240
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=1.6e-16 Score=107.64 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=65.7
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
.+.++|||+|||+.+++++|+++|+.||.|..+.+. ++||||+|.++++|++|++.|++..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 346899999999999999999999999998765554 579999999999999999999999999999999987
Q ss_pred cc
Q psy3721 105 TS 106 (207)
Q Consensus 105 ~~ 106 (207)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 241
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=106.98 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=70.3
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEE---ecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI---VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~---~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
...+..+|||+|||..+++++|+++|+.||.|..+.. .+|+|||+|.+ ++|.+|+..|||..+.|+.|+|.+++++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 3456789999999999999999999999998887722 27899999999 9999999999999999999999999887
Q ss_pred cCC
Q psy3721 186 VRQ 188 (207)
Q Consensus 186 ~~~ 188 (207)
...
T Consensus 92 ~~~ 94 (96)
T 1fjc_A 92 GGT 94 (96)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 242
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=108.68 Aligned_cols=78 Identities=17% Similarity=0.401 Sum_probs=66.9
Q ss_pred CCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE---------CCEEEEEeCChHHHHHHHHHhcCCeeCCeee
Q psy3721 29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---------KNYGFVHMENDEEGRTAIKELNGQIVNEKPL 99 (207)
Q Consensus 29 ~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~---------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i 99 (207)
.......++|||+|||.++++++|+++|+.|| |.++.+. +|||||+|.+.++|.+|+ .+++..+.|+.|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34456789999999999999999999999999 9999985 469999999999999999 999999999999
Q ss_pred EEEEcccCC
Q psy3721 100 KIEAATSRK 108 (207)
Q Consensus 100 ~v~~~~~~~ 108 (207)
+|.++.+..
T Consensus 91 ~V~~a~~~~ 99 (100)
T 2j76_E 91 RVDVADQAQ 99 (100)
T ss_dssp CCEECCCSC
T ss_pred EEEeccCCC
Confidence 999987653
No 243
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.4e-16 Score=104.71 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=66.2
Q ss_pred CCCce-eeecCCCCCCChhH----HHHhcccCC-cEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccC
Q psy3721 112 TPTTK-VFVGNLSDNTRAPE----VRELFVPYG-TVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTS 184 (207)
Q Consensus 112 ~~~~~-l~v~nl~~~~t~~~----l~~~f~~~g-~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~ 184 (207)
+++.+ |||+|||+.+++++ |+++|+.|| .|.++. .|+|||+|.+ ++|.+|+..|||..+.|++|+|.|++.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 44566 99999999999988 558999995 999984 4999999999 999999999999999999999999998
Q ss_pred ccC
Q psy3721 185 RVR 187 (207)
Q Consensus 185 ~~~ 187 (207)
+.+
T Consensus 84 ~sd 86 (96)
T 2diu_A 84 NRE 86 (96)
T ss_dssp SCC
T ss_pred Ccc
Confidence 743
No 244
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.65 E-value=1.1e-15 Score=113.04 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=71.7
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
.+.++|||+|||+.+|+++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.|++..+.|+.|+|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999996 469999999999999999999999999999999999
Q ss_pred ccCCC
Q psy3721 105 TSRKG 109 (207)
Q Consensus 105 ~~~~~ 109 (207)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86544
No 245
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.65 E-value=7.2e-16 Score=113.24 Aligned_cols=78 Identities=21% Similarity=0.382 Sum_probs=72.6
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE---CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~---~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
......++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|..|+..|++..+.|+.|+|.++.+
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 344567899999999999999999999999999999997 68999999999999999999999999999999999876
Q ss_pred C
Q psy3721 107 R 107 (207)
Q Consensus 107 ~ 107 (207)
+
T Consensus 148 ~ 148 (150)
T 2i2y_A 148 E 148 (150)
T ss_dssp C
T ss_pred C
Confidence 5
No 246
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.8e-16 Score=109.27 Aligned_cols=77 Identities=22% Similarity=0.523 Sum_probs=70.5
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
+..+|||+|||.++++++|+++|+.||.|..+.+. +|||||+|.+ ++|.+|+.. +|..++|+.|+|.+++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 35799999999999999999999999999999997 4699999999 999999998 9999999999999999
Q ss_pred CccCCCC
Q psy3721 184 SRVRQRP 190 (207)
Q Consensus 184 ~~~~~~~ 190 (207)
++.....
T Consensus 105 ~~~~~~~ 111 (116)
T 1x4b_A 105 AREESGS 111 (116)
T ss_dssp SCCCCCC
T ss_pred CCccCCC
Confidence 8765443
No 247
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.8e-16 Score=108.40 Aligned_cols=72 Identities=14% Similarity=0.275 Sum_probs=67.6
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
....+|||+|||+++|+++|+++|+.||.|.++.++ +|||||+|.+ ++|.+|+. ++|..++|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 446899999999999999999999999999999997 5899999999 99999999 89999999999999987
Q ss_pred C
Q psy3721 184 S 184 (207)
Q Consensus 184 ~ 184 (207)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 248
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.65 E-value=9.1e-16 Score=106.84 Aligned_cols=79 Identities=24% Similarity=0.443 Sum_probs=67.5
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEE
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 101 (207)
....+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|+..+ +..+.|+.|+|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 344567899999999999999999999999999999987 479999999999999999876 58899999999
Q ss_pred EEcccCCC
Q psy3721 102 EAATSRKG 109 (207)
Q Consensus 102 ~~~~~~~~ 109 (207)
.++.+...
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99986543
No 249
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.2e-15 Score=103.54 Aligned_cols=78 Identities=15% Similarity=0.285 Sum_probs=70.0
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
...+.++|||+|||+.+++++|+++|+.||.|..+.+. +|||||+|.+.++|++|+. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 44567899999999999999999999999999999987 3599999999999999998 4778999999999
Q ss_pred EcccCCCC
Q psy3721 103 AATSRKGP 110 (207)
Q Consensus 103 ~~~~~~~~ 110 (207)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99876653
No 250
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.65 E-value=5.1e-16 Score=114.93 Aligned_cols=74 Identities=19% Similarity=0.329 Sum_probs=68.1
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCC--ceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYG--KVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g--~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
..++|||+|||+++++++|+++|+.|| .|.++.+. +|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 89999986 56999999999999999999999999999999999
Q ss_pred cccC
Q psy3721 104 ATSR 107 (207)
Q Consensus 104 ~~~~ 107 (207)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8653
No 251
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.65 E-value=2.6e-16 Score=113.80 Aligned_cols=85 Identities=22% Similarity=0.489 Sum_probs=75.8
Q ss_pred CCCCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCe
Q psy3721 26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEK 97 (207)
Q Consensus 26 ~~~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~ 97 (207)
..|.....+.++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|++..+.|+
T Consensus 38 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 38 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3444556678899999999999999999999999999999986 46999999999999999999999999999
Q ss_pred eeEEEEcccCCCC
Q psy3721 98 PLKIEAATSRKGP 110 (207)
Q Consensus 98 ~i~v~~~~~~~~~ 110 (207)
.|+|.++.+...+
T Consensus 118 ~l~V~~a~~~~~~ 130 (135)
T 2lea_A 118 ELRVQMARYGRPP 130 (135)
T ss_dssp CCEEEECCCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 252
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=108.07 Aligned_cols=74 Identities=15% Similarity=0.434 Sum_probs=66.5
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe---------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~---------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
....++|||+|||.++++++|+++|+.|| |.++++. +|||||+|.+ ++|.+|+ .|||..++|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34578999999999999999999999999 9999986 5699999999 9999999 999999999999999
Q ss_pred eccCcc
Q psy3721 181 ISTSRV 186 (207)
Q Consensus 181 ~~~~~~ 186 (207)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998764
No 253
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.65 E-value=7.1e-16 Score=114.23 Aligned_cols=78 Identities=15% Similarity=0.301 Sum_probs=70.6
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE----CCEEEEEeCChHHHHHHHHHhcCCeeCC--eeeEEEEc
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV----KNYGFVHMENDEEGRTAIKELNGQIVNE--KPLKIEAA 104 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~----~~~~fV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~ 104 (207)
.+....+|||+||++.+|+++|+++|+.||.|.++.+. ++||||+|.+.++|+.|++.|+|..+.| +.|+|.|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 34556789999999999999999999999999999986 4599999999999999999999999965 99999999
Q ss_pred ccCC
Q psy3721 105 TSRK 108 (207)
Q Consensus 105 ~~~~ 108 (207)
++..
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8764
No 254
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=5.9e-16 Score=103.57 Aligned_cols=73 Identities=21% Similarity=0.395 Sum_probs=68.3
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCcc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 186 (207)
...+|||+|||+++++++|+++|+.| .|.++++. +|+|||+|.+ ++|.+|+..|||..++|+.|+|.++..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 46789999999999999999999999 99999886 8999999999 99999999999999999999999997653
No 255
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=1.9e-16 Score=107.24 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=65.3
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
++..+|||+|||+++++++|+++|+.||.|..+.+. +++|||+|.+ ++|.+|+..|||..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 446899999999999999999999999998766554 5799999999 9999999999999999999999998
Q ss_pred cC
Q psy3721 183 TS 184 (207)
Q Consensus 183 ~~ 184 (207)
++
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 65
No 256
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3e-16 Score=109.97 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=69.1
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
...++|||+|||..+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|+ .+++..+.|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 446899999999999999999999999999999996 579999999999999999 99999999999999998
Q ss_pred ccC
Q psy3721 105 TSR 107 (207)
Q Consensus 105 ~~~ 107 (207)
...
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 754
No 257
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=9.6e-16 Score=104.03 Aligned_cols=77 Identities=25% Similarity=0.359 Sum_probs=69.8
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEE-EE----CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECD-VV----KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~-~~----~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
....++|||+|||+++++++|+++|+.||.|.++. +. .+.|||+|.+.++|++|++.|++..+.|+.|+|.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34578999999999999999999999999999994 65 24599999999999999999999999999999999987
Q ss_pred CC
Q psy3721 107 RK 108 (207)
Q Consensus 107 ~~ 108 (207)
+.
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 258
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.9e-16 Score=108.16 Aligned_cols=75 Identities=25% Similarity=0.526 Sum_probs=70.2
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
+.++|||+|||.++++++|+++|+.||.|..+.+. +|||||+|.+ ++|.+|+..|||..+.|+.|+|.+++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35789999999999999999999999999999987 6799999999 99999999999999999999999999
Q ss_pred CccC
Q psy3721 184 SRVR 187 (207)
Q Consensus 184 ~~~~ 187 (207)
+...
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 8754
No 259
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.64 E-value=4.3e-16 Score=115.33 Aligned_cols=73 Identities=25% Similarity=0.399 Sum_probs=67.8
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCC--cEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYG--TVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g--~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
...+|||+|||+++++++|+++|+.|| .|.++++. +|||||+|.+ ++|.+|+..|||..++|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 357999999999999999999999999 99999996 6799999999 999999999999999999999999
Q ss_pred ccCc
Q psy3721 182 STSR 185 (207)
Q Consensus 182 ~~~~ 185 (207)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 260
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.64 E-value=9.3e-16 Score=106.79 Aligned_cols=76 Identities=28% Similarity=0.515 Sum_probs=67.3
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
..+.++|||+|||.++++++|+++|+.||.|.++.+. +|||||+|.+ ++|.+|+..+ |..++|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 3457899999999999999999999999999999996 5799999999 9999999986 5999999999999
Q ss_pred ccCccC
Q psy3721 182 STSRVR 187 (207)
Q Consensus 182 ~~~~~~ 187 (207)
+.++..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 998654
No 261
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.7e-15 Score=106.00 Aligned_cols=77 Identities=18% Similarity=0.431 Sum_probs=69.6
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCee--------C
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIV--------N 95 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~--------~ 95 (207)
...+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|++..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 34567899999999999999999999999999999987 46999999999999999999999999 5
Q ss_pred CeeeEEEEcccC
Q psy3721 96 EKPLKIEAATSR 107 (207)
Q Consensus 96 g~~i~v~~~~~~ 107 (207)
++.|.|.++.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 778999988753
No 262
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.7e-16 Score=105.72 Aligned_cols=79 Identities=10% Similarity=0.148 Sum_probs=68.9
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
......+|||+|||+++++++|+++|+.||.+ .+.++ +|||||+|.+ ++|.+|+ .+|+..++|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 34557899999999999999999999999955 88886 6799999999 9999999 5799999999999999
Q ss_pred ccCccCCCC
Q psy3721 182 STSRVRQRP 190 (207)
Q Consensus 182 ~~~~~~~~~ 190 (207)
+.+....+.
T Consensus 89 ~~~~~~~~~ 97 (102)
T 1wez_A 89 NSTAGTSGS 97 (102)
T ss_dssp ECCCCCCCC
T ss_pred CCCCCCCCC
Confidence 887654433
No 263
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=8.4e-16 Score=108.02 Aligned_cols=76 Identities=16% Similarity=0.311 Sum_probs=66.5
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEEC-CEEEEEeCChHHHHHHHHHhcCCeeCCee-----eEEEEccc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK-NYGFVHMENDEEGRTAIKELNGQIVNEKP-----LKIEAATS 106 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~-~~~fV~f~~~~~a~~a~~~l~~~~~~g~~-----i~v~~~~~ 106 (207)
...++|||+|||+++++++|+++|+.||.|..+.+.. +||||+|.+.++|++|++.|++..+.|+. |+|....+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 3568999999999999999999999999999999987 99999999999999999999999999988 77777655
Q ss_pred CC
Q psy3721 107 RK 108 (207)
Q Consensus 107 ~~ 108 (207)
..
T Consensus 94 ~~ 95 (115)
T 3beg_B 94 RS 95 (115)
T ss_dssp --
T ss_pred CC
Confidence 43
No 264
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=7.6e-16 Score=104.53 Aligned_cols=79 Identities=9% Similarity=0.237 Sum_probs=70.0
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEE---ECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccC
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDV---VKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~---~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 107 (207)
...+.++|||+|||+.+++++|+++|+.||.|..+.. .+|||||+|.+.++|++|++.+++..+.|+.|+|.++.+.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 3456789999999999999999999999999877721 2689999999999999999999999999999999999765
Q ss_pred CC
Q psy3721 108 KG 109 (207)
Q Consensus 108 ~~ 109 (207)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 265
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=105.30 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=68.6
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEE-EEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE-CDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~-i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
....++|||+|||+.+++++|+++|+.||.|.+ +.+. +|||||+|.++++|++|++. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 456789999999999999999999999999987 7664 68999999999999999987 99999999999999
Q ss_pred cccCC
Q psy3721 104 ATSRK 108 (207)
Q Consensus 104 ~~~~~ 108 (207)
+....
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87654
No 266
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.5e-16 Score=101.79 Aligned_cols=68 Identities=26% Similarity=0.505 Sum_probs=64.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|+..++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999886 4799999999999999999999 9999999999986
No 267
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.7e-15 Score=107.62 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=65.9
Q ss_pred ceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCE-EEEEEcc-HhHHHHHHHhCCceeCC--eeEEEEeccCcc
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNY-GFVHIDS-PDINKCIKELNGMMVDG--KPMKVQISTSRV 186 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~-afv~f~~-e~a~~A~~~l~g~~~~g--~~i~v~~~~~~~ 186 (207)
..|||+||++.+++++|+++|+.||.|.++.+. .|+ |||+|.+ ++|.+|+..|||..|.| +.|+|.|++++.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 346799999999999999999999999999987 475 9999999 99999999999999988 689999999764
No 268
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.7e-15 Score=106.06 Aligned_cols=75 Identities=23% Similarity=0.509 Sum_probs=68.9
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCcee--------CC
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMV--------DG 174 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~--------~g 174 (207)
..+..+|||+|||.++++++|+++|+.||.|.++++. ++||||+|.+ ++|.+|+..|||..+ .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 3456899999999999999999999999999999997 5699999999 999999999999999 67
Q ss_pred eeEEEEeccCc
Q psy3721 175 KPMKVQISTSR 185 (207)
Q Consensus 175 ~~i~v~~~~~~ 185 (207)
++|.|.|++++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999864
No 269
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.64 E-value=1.4e-15 Score=112.43 Aligned_cols=78 Identities=22% Similarity=0.494 Sum_probs=72.1
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
....++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3457899999999999999999999999999999986 47999999999999999999999999999999999
Q ss_pred cccCCC
Q psy3721 104 ATSRKG 109 (207)
Q Consensus 104 ~~~~~~ 109 (207)
+.+...
T Consensus 147 a~~~~~ 152 (158)
T 2kn4_A 147 ARYGRP 152 (158)
T ss_dssp ECCSSC
T ss_pred CCCCCC
Confidence 987644
No 270
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.7e-16 Score=109.11 Aligned_cols=76 Identities=12% Similarity=0.120 Sum_probs=69.2
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCce-EEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV-VECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i-~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
.+.+.++|||+|||+.+|+++|+++|+.||.| .++.+. +|||||+|.+.++|++|++. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 44567899999999999999999999999999 778885 68999999999999999976 9999999999999
Q ss_pred EcccC
Q psy3721 103 AATSR 107 (207)
Q Consensus 103 ~~~~~ 107 (207)
++..+
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98754
No 271
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=103.82 Aligned_cols=75 Identities=20% Similarity=0.339 Sum_probs=68.5
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEE-Ee----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD-IV----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~-~~----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
....+|||+|||+++++++|+++|+.||.|..++ +. .+.|||+|.+ ++|.+|+..|||..++|+.|+|.++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3468999999999999999999999999999995 65 3359999999 9999999999999999999999999987
Q ss_pred c
Q psy3721 186 V 186 (207)
Q Consensus 186 ~ 186 (207)
.
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 3
No 272
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=7.5e-16 Score=114.12 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=68.2
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe----cCEEEEEEcc-HhHHHHHHHhCCceeCC--eeEEEEeccCc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----RNYGFVHIDS-PDINKCIKELNGMMVDG--KPMKVQISTSR 185 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~----~~~afv~f~~-e~a~~A~~~l~g~~~~g--~~i~v~~~~~~ 185 (207)
...+|||+||++.+++++|+++|++||.|.++.+. +++|||+|.+ ++|.+|+..|||..|.| +.|+|.|++++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 35679999999999999999999999999999996 4599999999 99999999999999966 99999999976
Q ss_pred c
Q psy3721 186 V 186 (207)
Q Consensus 186 ~ 186 (207)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 3
No 273
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=104.33 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=68.0
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEE-EEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE-CDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~-~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
.....+|||+|||+++++++|+++|+.||.|.. +.+. +|||||+|.+ ++|.+|+.. ||..++|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 345789999999999999999999999999987 7764 6899999999 999999998 99999999999999
Q ss_pred ccCcc
Q psy3721 182 STSRV 186 (207)
Q Consensus 182 ~~~~~ 186 (207)
+.+..
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87653
No 274
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.7e-16 Score=107.94 Aligned_cols=77 Identities=25% Similarity=0.475 Sum_probs=70.6
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
...++|||+|||+.+++++|+++|+.||.|..+.+. +|||||+|.+.++|++|++. ++..+.|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 446899999999999999999999999999999987 46999999999999999987 999999999999999
Q ss_pred ccCCCC
Q psy3721 105 TSRKGP 110 (207)
Q Consensus 105 ~~~~~~ 110 (207)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 876653
No 275
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=5.2e-16 Score=109.61 Aligned_cols=77 Identities=10% Similarity=0.192 Sum_probs=69.3
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCc---eEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeee
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGK---VVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPL 99 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~---i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i 99 (207)
......++|||+|||+++|+++|+++|+.||. |.++.+. +|||||+|.++++|++|++ +++..++|+.|
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 34456789999999999999999999999999 7888876 5799999999999999998 99999999999
Q ss_pred EEEEcccC
Q psy3721 100 KIEAATSR 107 (207)
Q Consensus 100 ~v~~~~~~ 107 (207)
+|.++...
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99988643
No 276
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=110.17 Aligned_cols=74 Identities=16% Similarity=0.416 Sum_probs=68.4
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
...+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44568899999999999999999999999999999985 5799999999999999999999999999999998
Q ss_pred Ec
Q psy3721 103 AA 104 (207)
Q Consensus 103 ~~ 104 (207)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 74
No 277
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=102.59 Aligned_cols=78 Identities=15% Similarity=0.350 Sum_probs=68.1
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEecC---EEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccC
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVR 187 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~---~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~ 187 (207)
....+|||+|||+++++++|+++|+.||.|.+|...+. ||||+|.+ ++|.+|+. |||..++|+.|+|.++.++..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 34579999999999999999999999999999844321 99999999 99999999 999999999999999887654
Q ss_pred CCC
Q psy3721 188 QRP 190 (207)
Q Consensus 188 ~~~ 190 (207)
..+
T Consensus 85 ~~~ 87 (94)
T 2e5g_A 85 QSP 87 (94)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 278
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=2.5e-15 Score=107.35 Aligned_cols=76 Identities=16% Similarity=0.349 Sum_probs=69.5
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE---CCE-EEEEeCChHHHHHHHHHhcCCeeCC--eeeEEEEccc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---KNY-GFVHMENDEEGRTAIKELNGQIVNE--KPLKIEAATS 106 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~---~~~-~fV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~ 106 (207)
.....|||+||++.+|+++|+++|+.||.|.++.+. +++ |||+|.+.++|+.|++.|+|..+.| +.|+|.+++.
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 456788999999999999999999999999999887 466 9999999999999999999999987 8999999986
Q ss_pred CC
Q psy3721 107 RK 108 (207)
Q Consensus 107 ~~ 108 (207)
..
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 279
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=1.1e-15 Score=101.77 Aligned_cols=70 Identities=24% Similarity=0.493 Sum_probs=66.1
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcC----C-------ceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCCeee
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKY----G-------KVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNEKPL 99 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~----g-------~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i 99 (207)
.+.++|||+|||+++++++|+++|+.| | .|.++.+. +|||||+|.+.++|.+|+ .+++..+.|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 457899999999999999999999999 8 89999988 799999999999999999 999999999999
Q ss_pred EEEE
Q psy3721 100 KIEA 103 (207)
Q Consensus 100 ~v~~ 103 (207)
+|..
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9975
No 280
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.63 E-value=3.4e-16 Score=103.06 Aligned_cols=66 Identities=21% Similarity=0.364 Sum_probs=61.9
Q ss_pred ccEEEcCCCCCC------CHHHHHHHhhcCCceEEEEEE------CCEEEEEeCChHHHHHHHHHhcCCeeCCe-eeEE
Q psy3721 36 FKIFIGNVNPGT------SVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNGQIVNEK-PLKI 101 (207)
Q Consensus 36 ~~l~V~~lp~~~------t~~~l~~~f~~~g~i~~i~~~------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~-~i~v 101 (207)
++|||+|||+.+ ++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|+|..+.|+ .|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 779999999999999999987 58999999999999999999999999999 8865
No 281
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.63 E-value=6.2e-16 Score=111.12 Aligned_cols=78 Identities=19% Similarity=0.368 Sum_probs=70.5
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEE--EEEE--------CCEEEEEeCChHHHHHHHHHhcCC----eeCC
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE--CDVV--------KNYGFVHMENDEEGRTAIKELNGQ----IVNE 96 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~--i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~----~~~g 96 (207)
.....++|||+|||+++|+++|+++|+.||.|.. +.++ +|||||+|.+. +|.+|+..|++. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999966 7775 58999999999 999999999999 9999
Q ss_pred eeeEEEEcccCCC
Q psy3721 97 KPLKIEAATSRKG 109 (207)
Q Consensus 97 ~~i~v~~~~~~~~ 109 (207)
+.|+|.++.+...
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987644
No 282
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=4.6e-15 Score=105.38 Aligned_cols=76 Identities=22% Similarity=0.213 Sum_probs=68.0
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCE-EEEEeCChHHHHHHHHHhcCCeeCC--eeeEEEEcccC
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNY-GFVHMENDEEGRTAIKELNGQIVNE--KPLKIEAATSR 107 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~-~fV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~~ 107 (207)
.....|||+||++.+++++|+++|+.||.|.++.+. .|| |||+|.+.++|..|++.|+|..+.| +.|+|.++.+.
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 345667899999999999999999999999999887 475 9999999999999999999999977 68999998865
Q ss_pred C
Q psy3721 108 K 108 (207)
Q Consensus 108 ~ 108 (207)
.
T Consensus 103 ~ 103 (124)
T 2e5i_A 103 R 103 (124)
T ss_dssp C
T ss_pred c
Confidence 3
No 283
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.63 E-value=3.7e-16 Score=101.27 Aligned_cols=67 Identities=28% Similarity=0.550 Sum_probs=62.7
Q ss_pred cEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 37 ~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
+|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999886 4699999999999999996 9999999999999874
No 284
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.63 E-value=2.2e-15 Score=112.44 Aligned_cols=79 Identities=19% Similarity=0.364 Sum_probs=71.6
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
...+.++|||+|||+.+++++|+++|+.||.|..+.+. +|||||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999997 4799999999999999999999999999999999
Q ss_pred EcccCCC
Q psy3721 103 AATSRKG 109 (207)
Q Consensus 103 ~~~~~~~ 109 (207)
|+.+...
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9986554
No 285
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=109.82 Aligned_cols=73 Identities=22% Similarity=0.531 Sum_probs=67.6
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
...+..+|||+|||..+++++|+++|+.||.|..+++. +|||||+|.+ ++|.+|+..|||..+.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999985 6799999999 99999999999999999999999
Q ss_pred ec
Q psy3721 181 IS 182 (207)
Q Consensus 181 ~~ 182 (207)
|+
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 286
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.62 E-value=1.8e-15 Score=107.46 Aligned_cols=75 Identities=13% Similarity=0.400 Sum_probs=69.3
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
+.++|||+|||.++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|+ .+++..+.|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 36899999999999999999999999999999986 569999999999999999 899999999999999988
Q ss_pred cCCC
Q psy3721 106 SRKG 109 (207)
Q Consensus 106 ~~~~ 109 (207)
....
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6443
No 287
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=1.3e-16 Score=115.86 Aligned_cols=115 Identities=9% Similarity=0.076 Sum_probs=67.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc-CCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-
Q psy3721 70 NYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS-RKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147 (207)
Q Consensus 70 ~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~-~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~- 147 (207)
++|+.+|..++.+..+...+... .+|...--..... .........+|||+|||+++++++|+++|+.|| +.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~ 79 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEI 79 (139)
T ss_dssp --------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE
Confidence 56777777777766555432222 2332221111111 112334567999999999999999999999999 6688886
Q ss_pred ------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCccC
Q psy3721 148 ------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVR 187 (207)
Q Consensus 148 ------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~~ 187 (207)
+|||||+|.+ ++|.+|+ .+|+..++|+.|+|.++.+...
T Consensus 80 d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 80 GPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp SSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred CCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 6799999999 9999999 8899999999999999987654
No 288
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-15 Score=101.74 Aligned_cols=77 Identities=14% Similarity=0.275 Sum_probs=67.8
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEEC--C-EEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCC
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--N-YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~--~-~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 108 (207)
....++|||+|||+++++++|+++|+.||.|.++...+ + ||||+|.+.++|++|+. +++..+.|+.|.|.++....
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 34567999999999999999999999999999983332 1 99999999999999998 99999999999999887554
Q ss_pred C
Q psy3721 109 G 109 (207)
Q Consensus 109 ~ 109 (207)
.
T Consensus 84 ~ 84 (94)
T 2e5g_A 84 F 84 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 289
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=2.9e-17 Score=115.61 Aligned_cols=82 Identities=24% Similarity=0.432 Sum_probs=72.9
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEE--------EEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeC
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE--------CDIV--------RNYGFVHIDS-PDINKCIKELNGMMVD 173 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~--------~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~ 173 (207)
..+..+|||+|||.++++++|+++|+.||.|.. +.+. ++||||+|.+ ++|.+|+..|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345789999999999999999999999999988 6665 5799999999 9999999999999999
Q ss_pred CeeEEEEeccCccCCCCCC
Q psy3721 174 GKPMKVQISTSRVRQRPGV 192 (207)
Q Consensus 174 g~~i~v~~~~~~~~~~~~~ 192 (207)
|+.|+|.+++++.....+.
T Consensus 84 g~~l~V~~a~~~~~~~~gg 102 (116)
T 2lcw_A 84 GNPIKVSFATRRADFNRGG 102 (116)
Confidence 9999999999886554443
No 290
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=2.1e-15 Score=116.52 Aligned_cols=73 Identities=21% Similarity=0.343 Sum_probs=69.2
Q ss_pred CCceeeecCCC-CCCChhHHHHhcccCCcEEEEEEe---cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 113 PTTKVFVGNLS-DNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 113 ~~~~l~v~nl~-~~~t~~~l~~~f~~~g~i~~~~~~---~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
++.+|||+||| +.+++++|+++|+.||.|.++++. +|+|||+|.+ ++|.+|+..|||..+.|+.|+|.+++..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 46899999999 899999999999999999999997 6899999999 9999999999999999999999999754
No 291
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=2.4e-15 Score=100.88 Aligned_cols=74 Identities=26% Similarity=0.460 Sum_probs=60.1
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe---cCEEEEEEcc-HhHHHHHHHhCCcee--CCeeEEEEecc
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMV--DGKPMKVQIST 183 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~---~~~afv~f~~-e~a~~A~~~l~g~~~--~g~~i~v~~~~ 183 (207)
...+..+|||+|||+++++++|+++|+.||.|.+++++ +|||||+|.+ ++|. .++|..+ .|+.|.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEEcC
Confidence 34567899999999999999999999999999999997 7999999999 8876 3677664 59999999998
Q ss_pred CccC
Q psy3721 184 SRVR 187 (207)
Q Consensus 184 ~~~~ 187 (207)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 7643
No 292
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.62 E-value=1.2e-16 Score=107.24 Aligned_cols=74 Identities=23% Similarity=0.566 Sum_probs=64.3
Q ss_pred ceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
++|||+|||.++++++|+++|+.||.|.++.+. +|+|||+|.+ + |.+|+..|||..++|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999999997 5799999999 9 99999999999999999999999887
Q ss_pred cCCC
Q psy3721 186 VRQR 189 (207)
Q Consensus 186 ~~~~ 189 (207)
....
T Consensus 81 ~~~~ 84 (90)
T 2ki2_A 81 KSLE 84 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 5443
No 293
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.62 E-value=1.4e-15 Score=107.83 Aligned_cols=78 Identities=22% Similarity=0.419 Sum_probs=70.2
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCcc
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 186 (207)
...+..+|||+|+ ++++++|+++|+.||.|.++.+. +|||||+|.+ ++|.+|+..|||..+.|+.|+|.|+++..
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 4456789999995 69999999999999999999998 8999999999 99999999999999999999999999875
Q ss_pred CCC
Q psy3721 187 RQR 189 (207)
Q Consensus 187 ~~~ 189 (207)
...
T Consensus 113 ~~~ 115 (121)
T 2bz2_A 113 MLD 115 (121)
T ss_dssp C--
T ss_pred CCC
Confidence 433
No 294
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.62 E-value=1.9e-16 Score=106.31 Aligned_cols=73 Identities=26% Similarity=0.563 Sum_probs=65.3
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccC
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 107 (207)
++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.+ |.+|+..+++..+.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999987 569999999999 99999999999999999999999875
Q ss_pred CC
Q psy3721 108 KG 109 (207)
Q Consensus 108 ~~ 109 (207)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 295
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=104.41 Aligned_cols=77 Identities=8% Similarity=0.083 Sum_probs=68.0
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
.+...++|||+|||+++|+++|+++|+.||.+ ++.+. +|||||+|.++++|++|+ .+++..+.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 34567899999999999999999999999955 88886 579999999999999999 5799999999999998
Q ss_pred cccCCC
Q psy3721 104 ATSRKG 109 (207)
Q Consensus 104 ~~~~~~ 109 (207)
+.....
T Consensus 89 ~~~~~~ 94 (102)
T 1wez_A 89 NSTAGT 94 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 876543
No 296
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=8.3e-16 Score=111.17 Aligned_cols=77 Identities=12% Similarity=0.201 Sum_probs=69.6
Q ss_pred CCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCc---eEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCee
Q psy3721 29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGK---VVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKP 98 (207)
Q Consensus 29 ~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~---i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~ 98 (207)
.......++|||+|||+++|+++|+++|+.||. |.++.+. +|||||+|.+.++|++|++ +++..+.|+.
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 444566789999999999999999999999999 7788876 5799999999999999998 9999999999
Q ss_pred eEEEEccc
Q psy3721 99 LKIEAATS 106 (207)
Q Consensus 99 i~v~~~~~ 106 (207)
|.|.++..
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99998764
No 297
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=105.00 Aligned_cols=73 Identities=12% Similarity=0.219 Sum_probs=66.7
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
....++|||+|||+++++++|+++|+.| .|.++.+. +|||||+|.++++|++|+ .+++..++|+.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3456899999999999999999999999 88889886 689999999999999999 79999999999999887
Q ss_pred cc
Q psy3721 105 TS 106 (207)
Q Consensus 105 ~~ 106 (207)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 298
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=5.5e-16 Score=102.06 Aligned_cols=65 Identities=17% Similarity=0.344 Sum_probs=61.1
Q ss_pred ceeeecCCCCCC------ChhHHHHhcccCCcEEEEEEe------cCEEEEEEcc-HhHHHHHHHhCCceeCCe-eEEE
Q psy3721 115 TKVFVGNLSDNT------RAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGK-PMKV 179 (207)
Q Consensus 115 ~~l~v~nl~~~~------t~~~l~~~f~~~g~i~~~~~~------~~~afv~f~~-e~a~~A~~~l~g~~~~g~-~i~v 179 (207)
++|||+|||..+ ++++|+++|+.||.|.++.+. +|||||+|.+ ++|.+|+..|||..++|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 679999999999999999987 6899999999 999999999999999999 8876
No 299
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.61 E-value=4.5e-16 Score=100.85 Aligned_cols=66 Identities=29% Similarity=0.529 Sum_probs=61.8
Q ss_pred eeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 116 ~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
+|||+|||+++++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+. |||..++|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999886 4799999999 99999987 9999999999999875
No 300
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.60 E-value=4e-15 Score=99.81 Aligned_cols=73 Identities=22% Similarity=0.456 Sum_probs=60.7
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE---CCEEEEEeCChHHHHHHHHHhcCCee--CCeeeEEEEccc
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---KNYGFVHMENDEEGRTAIKELNGQIV--NEKPLKIEAATS 106 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~---~~~~fV~f~~~~~a~~a~~~l~~~~~--~g~~i~v~~~~~ 106 (207)
..+.++|||+|||+++|+++|+++|+.||.|.++.+. +|||||+|.++++|++ +++..+ .|+.|.|.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 4567899999999999999999999999999999997 6999999999999983 455554 699999999886
Q ss_pred CC
Q psy3721 107 RK 108 (207)
Q Consensus 107 ~~ 108 (207)
+.
T Consensus 84 k~ 85 (89)
T 3d2w_A 84 KH 85 (89)
T ss_dssp --
T ss_pred CC
Confidence 54
No 301
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=105.79 Aligned_cols=75 Identities=12% Similarity=0.133 Sum_probs=68.6
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcE-EEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTV-VECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i-~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
..+..+|||+|||+++++++|+++|+.||.| ..+.++ +|||||+|.+ ++|.+|+.. ||..++|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 4457899999999999999999999999999 778875 7899999999 999999988 99999999999999
Q ss_pred ccCcc
Q psy3721 182 STSRV 186 (207)
Q Consensus 182 ~~~~~ 186 (207)
+.++.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98764
No 302
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=6.9e-16 Score=105.76 Aligned_cols=77 Identities=30% Similarity=0.510 Sum_probs=67.1
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEE-------ECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~-------~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
....++|||+|||+++++++|+++|+.||.|....+ .+|||||+|.+.++|++|++ +++..+.|+.|+|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 346789999999999999999999999997754111 16899999999999999998 9999999999999999
Q ss_pred ccCCC
Q psy3721 105 TSRKG 109 (207)
Q Consensus 105 ~~~~~ 109 (207)
.+...
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86543
No 303
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=100.28 Aligned_cols=74 Identities=14% Similarity=0.198 Sum_probs=66.4
Q ss_pred CcccEEEcCCCCCCCHHH----HHHHhhcC-CceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCC
Q psy3721 34 GTFKIFIGNVNPGTSVEL----IRPLFEKY-GKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~----l~~~f~~~-g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 108 (207)
..+.|||+|||..+++++ |+++|+.| |+|.+|. .|+|||.|.+.++|.+|++.|+|..+.|+.|+|.++....
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 344599999999999998 55899999 5999884 5999999999999999999999999999999999998765
Q ss_pred C
Q psy3721 109 G 109 (207)
Q Consensus 109 ~ 109 (207)
+
T Consensus 86 d 86 (96)
T 2diu_A 86 E 86 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 304
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=110.77 Aligned_cols=78 Identities=26% Similarity=0.499 Sum_probs=68.9
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEE--------EEEe-----cCEEEEEEcc-HhHHHHHHHhCCceeCCe
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE--------CDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGK 175 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~--------~~~~-----~~~afv~f~~-e~a~~A~~~l~g~~~~g~ 175 (207)
...++.+|||+|||+++++++|+++|+.||.|.. +.+. +|||||+|.+ ++|.+|+..|||..+.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 3456789999999999999999999999998765 3333 7899999999 999999999999999999
Q ss_pred eEEEEeccCccC
Q psy3721 176 PMKVQISTSRVR 187 (207)
Q Consensus 176 ~i~v~~~~~~~~ 187 (207)
.|+|.|+++...
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987643
No 305
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1e-15 Score=99.51 Aligned_cols=67 Identities=30% Similarity=0.583 Sum_probs=63.2
Q ss_pred ceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
++|||+|||.++++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+..++ ..++|+.|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 379999999999999999999999999999986 5699999999 99999999999 9999999999986
No 306
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=4.4e-16 Score=106.73 Aligned_cols=75 Identities=25% Similarity=0.465 Sum_probs=65.9
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEE-------ecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~-------~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
.+..+|||+|||+++++++|+++|+.||.|....+ .+|||||+|.+ ++|.+|+. |||..+.|+.|+|.+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 45789999999999999999999999997655111 17899999999 99999998 99999999999999998
Q ss_pred CccC
Q psy3721 184 SRVR 187 (207)
Q Consensus 184 ~~~~ 187 (207)
++..
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 307
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.59 E-value=1.8e-15 Score=106.82 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=67.8
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCc---EEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEE
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGT---VVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~---i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v 179 (207)
.....+|||+|||+++++++|+++|+.||. |..+++. +|||||+|.+ ++|.+|+. +||..++|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 345689999999999999999999999998 8888886 6799999999 99999999 9999999999999
Q ss_pred EeccCc
Q psy3721 180 QISTSR 185 (207)
Q Consensus 180 ~~~~~~ 185 (207)
.++..+
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999754
No 308
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.3e-16 Score=109.41 Aligned_cols=75 Identities=15% Similarity=0.283 Sum_probs=66.6
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEE-EEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE-CDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~-i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
....++|||+|||+.+|+++|+++|+.||.|.+ +.+. +|||||+|.+.++|++|+. +++..+.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 345689999999999999999999999999866 3332 6899999999999999998 999999999999999
Q ss_pred cccC
Q psy3721 104 ATSR 107 (207)
Q Consensus 104 ~~~~ 107 (207)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8753
No 309
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=3.6e-15 Score=99.24 Aligned_cols=69 Identities=19% Similarity=0.521 Sum_probs=64.7
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccC----C-------cEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCceeCCeeE
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPY----G-------TVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPM 177 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~----g-------~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i 177 (207)
.+..+|||+|||+++++++|+++|+.| | .|.++.+. ++||||+|.+ ++|.+|+ .|||..+.|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 346899999999999999999999999 8 89999997 8999999999 9999999 999999999999
Q ss_pred EEEe
Q psy3721 178 KVQI 181 (207)
Q Consensus 178 ~v~~ 181 (207)
+|..
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9874
No 310
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=3.8e-15 Score=108.46 Aligned_cols=76 Identities=21% Similarity=0.403 Sum_probs=68.2
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEE--------EEEE-----CCEEEEEeCChHHHHHHHHHhcCCeeCCeee
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE--------CDVV-----KNYGFVHMENDEEGRTAIKELNGQIVNEKPL 99 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~--------i~~~-----~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i 99 (207)
.+.++|||+|||+.+|+++|+++|+.||.|.. +.+. +|||||+|.+.++|..|+..|++..+.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 56789999999999999999999999998754 4333 6799999999999999999999999999999
Q ss_pred EEEEcccCC
Q psy3721 100 KIEAATSRK 108 (207)
Q Consensus 100 ~v~~~~~~~ 108 (207)
+|.++.+..
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999997654
No 311
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.58 E-value=1.5e-15 Score=109.79 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=68.4
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCc---EEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGT---VVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMK 178 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~---i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~ 178 (207)
+.....+|||+|||+++|+++|+++|+.||. |.++++. +|||||+|.+ ++|.+|+. |||..++|+.|+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3445789999999999999999999999998 7888886 6799999999 99999999 999999999999
Q ss_pred EEeccCc
Q psy3721 179 VQISTSR 185 (207)
Q Consensus 179 v~~~~~~ 185 (207)
|.++.+.
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9998754
No 312
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.9e-16 Score=109.24 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=65.9
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEE-Ee-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD-IV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~-~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
.....+|||+|||+++++++|+++|+.||.|..+. +. +|||||+|.+ ++|.+|+. |||..++|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34568999999999999999999999999887633 32 6899999999 99999999 999999999999999
Q ss_pred ccCc
Q psy3721 182 STSR 185 (207)
Q Consensus 182 ~~~~ 185 (207)
+.+.
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9764
No 313
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.58 E-value=1.2e-15 Score=105.75 Aligned_cols=75 Identities=9% Similarity=0.146 Sum_probs=68.3
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCc---eEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGK---VVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~---i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 101 (207)
....++|||+|||+++|+++|+++|+.||. |.++.+. +|||||+|.+.++|++|++ +++..++|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 456789999999999999999999999998 8888886 5799999999999999998 9999999999999
Q ss_pred EEcccC
Q psy3721 102 EAATSR 107 (207)
Q Consensus 102 ~~~~~~ 107 (207)
.++...
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 988653
No 314
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.5e-15 Score=100.42 Aligned_cols=75 Identities=24% Similarity=0.446 Sum_probs=64.4
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe---cCEEEEEEcc-HhHHHHHHHhCCce--eCCeeEEEEeccCc
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMM--VDGKPMKVQISTSR 185 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~---~~~afv~f~~-e~a~~A~~~l~g~~--~~g~~i~v~~~~~~ 185 (207)
.++++|||+|||+++++++|+++|+.||.|.++++. +|||||+|.+ ++|.+ +++.. +.|+.|+|.+++++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQS----LCGEDLIIKGISVHISNAEPK 78 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEecCCC
Confidence 346899999999999999999999999999999997 7899999999 88864 35554 59999999999887
Q ss_pred cCCCC
Q psy3721 186 VRQRP 190 (207)
Q Consensus 186 ~~~~~ 190 (207)
.....
T Consensus 79 ~~~~~ 83 (88)
T 1wf0_A 79 HNSNS 83 (88)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 65443
No 315
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.58 E-value=6.2e-15 Score=111.29 Aligned_cols=77 Identities=23% Similarity=0.373 Sum_probs=71.2
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
....++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.+++..+.|+.|+|.++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3457899999999999999999999999999999996 489999999999999999999999999999999998
Q ss_pred ccCC
Q psy3721 105 TSRK 108 (207)
Q Consensus 105 ~~~~ 108 (207)
....
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 7543
No 316
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.58 E-value=1.1e-14 Score=107.95 Aligned_cols=76 Identities=30% Similarity=0.486 Sum_probs=70.6
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
++++|||+|||.++++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+..|||..+.|+.|+|.+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46799999999999999999999999999999986 4799999999 99999999999999999999999998
Q ss_pred CccCC
Q psy3721 184 SRVRQ 188 (207)
Q Consensus 184 ~~~~~ 188 (207)
+....
T Consensus 82 ~~~~~ 86 (168)
T 1b7f_A 82 PGGES 86 (168)
T ss_dssp CCSST
T ss_pred CCccc
Confidence 76544
No 317
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.58 E-value=1.3e-15 Score=98.54 Aligned_cols=67 Identities=25% Similarity=0.493 Sum_probs=62.1
Q ss_pred cEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 37 ~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
+|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++. ++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 68999999999999999999999999999886 57999999999999999974 889999999999874
No 318
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.58 E-value=3.7e-15 Score=117.01 Aligned_cols=73 Identities=14% Similarity=0.257 Sum_probs=67.6
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCC--ceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYG--KVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g--~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
..++|||+|||+.+|+++|+++|+.|| .|.++.++ +|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999987 46999999999999999999999999999999999
Q ss_pred ccc
Q psy3721 104 ATS 106 (207)
Q Consensus 104 ~~~ 106 (207)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 319
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.57 E-value=1.3e-14 Score=107.38 Aligned_cols=74 Identities=32% Similarity=0.539 Sum_probs=69.5
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccC
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTS 184 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~ 184 (207)
.++|||+|||.++++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+..|||..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999999999997 3799999999 999999999999999999999999987
Q ss_pred ccC
Q psy3721 185 RVR 187 (207)
Q Consensus 185 ~~~ 187 (207)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 320
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=1.2e-14 Score=103.07 Aligned_cols=76 Identities=24% Similarity=0.387 Sum_probs=70.1
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCC
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 109 (207)
+.+.++|||+|+ ++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.|++..+.|+.|+|.++.+...
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 356789999995 79999999999999999999988 79999999999999999999999999999999999987643
No 321
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-15 Score=105.54 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=68.6
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCc---EEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGT---VVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMK 178 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~---i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~ 178 (207)
+.....+|||+|||+++++++|+++|+.||. |..+.+. +|+|||+|.+ ++|.+|+. +||..++|+.|+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3456789999999999999999999999998 8888886 6799999999 99999999 999999999999
Q ss_pred EEeccCc
Q psy3721 179 VQISTSR 185 (207)
Q Consensus 179 v~~~~~~ 185 (207)
|.++.+.
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9999865
No 322
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.57 E-value=3.5e-15 Score=102.39 Aligned_cols=74 Identities=27% Similarity=0.512 Sum_probs=68.3
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
...++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|+. ++..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 456899999999999999999999999999999986 4899999999999999997 9999999999999987
Q ss_pred cCC
Q psy3721 106 SRK 108 (207)
Q Consensus 106 ~~~ 108 (207)
+..
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 654
No 323
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.57 E-value=1.2e-14 Score=112.69 Aligned_cols=77 Identities=22% Similarity=0.514 Sum_probs=68.8
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
+..+..+|||+|||+++++++|+++|+.||.|.+|++. +|||||+|.+ ++|.+|+..+||..+.|+.+++.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 34467899999999999999999999999999999986 5699999999 99999999999999999999999
Q ss_pred eccCcc
Q psy3721 181 ISTSRV 186 (207)
Q Consensus 181 ~~~~~~ 186 (207)
++....
T Consensus 91 ~~~~~~ 96 (213)
T 4f02_A 91 WSQRDP 96 (213)
T ss_dssp ECCCCT
T ss_pred cccccc
Confidence 987653
No 324
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.6e-14 Score=105.52 Aligned_cols=76 Identities=30% Similarity=0.599 Sum_probs=70.4
Q ss_pred CCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEE
Q psy3721 30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101 (207)
Q Consensus 30 ~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 101 (207)
....+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|+..|++..++|+.|+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 344567899999999999999999999999999999987 459999999999999999999999999999999
Q ss_pred EEcc
Q psy3721 102 EAAT 105 (207)
Q Consensus 102 ~~~~ 105 (207)
.|+.
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9986
No 325
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.57 E-value=3.4e-15 Score=117.22 Aligned_cols=72 Identities=18% Similarity=0.286 Sum_probs=66.7
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCC--cEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEe
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYG--TVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQI 181 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g--~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~ 181 (207)
...+|||+||++++++++|+++|+.|| .|.+|+++ +|||||+|.+ ++|.+|+..|||..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 356899999999999999999999999 99999996 5799999999 999999999999999999999999
Q ss_pred ccC
Q psy3721 182 STS 184 (207)
Q Consensus 182 ~~~ 184 (207)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 326
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.6e-15 Score=99.09 Aligned_cols=76 Identities=20% Similarity=0.460 Sum_probs=64.4
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE---CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccCCC
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 109 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~---~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 109 (207)
...++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|+++... ...+.|+.|.|.++.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 356899999999999999999999999999999997 68999999999999754321 3345899999999887654
Q ss_pred C
Q psy3721 110 P 110 (207)
Q Consensus 110 ~ 110 (207)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 327
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=9e-15 Score=101.78 Aligned_cols=70 Identities=21% Similarity=0.265 Sum_probs=65.1
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
..+|||+|||+++++++|+++|+.| .|.++.+. +|+|||+|.+ ++|.+|+ .+||..++|+.|.|..+.+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4689999999999999999999999 88999886 7899999999 9999999 79999999999999988754
No 328
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.56 E-value=6.5e-15 Score=115.78 Aligned_cols=77 Identities=16% Similarity=0.325 Sum_probs=69.2
Q ss_pred CCCCceeeecCCCCCC---------ChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCcee------
Q psy3721 111 NTPTTKVFVGNLSDNT---------RAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMV------ 172 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~---------t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~------ 172 (207)
.....+|||+||+..+ ++++|+.+|+.||.|.+|+++ +|+|||+|.+ ++|..|+..|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 3457899999999998 799999999999999999998 8999999999 999999999999999
Q ss_pred ------CCeeEEEEeccCccC
Q psy3721 173 ------DGKPMKVQISTSRVR 187 (207)
Q Consensus 173 ------~g~~i~v~~~~~~~~ 187 (207)
.|+.|.|.|+++.+.
T Consensus 211 e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TGGGGGGSCCCEEEECC----
T ss_pred cccccCCCCEEEEEEccCCCC
Confidence 899999999997643
No 329
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=9.7e-15 Score=110.22 Aligned_cols=77 Identities=27% Similarity=0.505 Sum_probs=71.2
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
..++.+|||+|||+.+++++|+++|+.||.|..|.+. +++|||+|.+ ++|.+|+..|||..+.|+.|+|.|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3457899999999999999999999999999999996 5899999999 9999999999999999999999999
Q ss_pred cCccC
Q psy3721 183 TSRVR 187 (207)
Q Consensus 183 ~~~~~ 187 (207)
.....
T Consensus 165 ~~~~~ 169 (177)
T 2f3j_A 165 ASQID 169 (177)
T ss_dssp SSGGG
T ss_pred cCCCC
Confidence 87643
No 330
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.55 E-value=4.7e-14 Score=107.87 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=85.3
Q ss_pred ChHHHHHHHHHh--cCCeeCCeeeEEEEcccCCCCC--------CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe
Q psy3721 78 NDEEGRTAIKEL--NGQIVNEKPLKIEAATSRKGPN--------TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 147 (207)
Q Consensus 78 ~~~~a~~a~~~l--~~~~~~g~~i~v~~~~~~~~~~--------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~ 147 (207)
+.+.+..|+... ....+.+...++........+. ...++|||+|||+++++++|+++|+.||.|..+++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667777888766 4556666666666653222111 124789999999999999999999999999999987
Q ss_pred -------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 148 -------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 148 -------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
+|+|||+|.+ ++|.+|+..++ ..+.|+.|.|.+++.-
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 6899999999 99999997754 5899999999998764
No 331
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.55 E-value=8.5e-15 Score=100.44 Aligned_cols=73 Identities=29% Similarity=0.564 Sum_probs=67.2
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccC
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTS 184 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~ 184 (207)
..++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+ ++|.+|+. +|..++|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 46799999999999999999999999999999996 5899999999 99999999 99999999999999987
Q ss_pred ccC
Q psy3721 185 RVR 187 (207)
Q Consensus 185 ~~~ 187 (207)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 643
No 332
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=4.2e-16 Score=109.61 Aligned_cols=77 Identities=19% Similarity=0.371 Sum_probs=70.3
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEE--------EEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCC
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE--------CDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNE 96 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~--------i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g 96 (207)
.+.++|||+|||+.+++++|+++|+.||.|.. +.+. +|||||+|.+.++|++|++.|++..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999987 6665 5799999999999999999999999999
Q ss_pred eeeEEEEcccCCC
Q psy3721 97 KPLKIEAATSRKG 109 (207)
Q Consensus 97 ~~i~v~~~~~~~~ 109 (207)
+.|+|.++.++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999987654
No 333
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.54 E-value=1.6e-14 Score=113.49 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=70.1
Q ss_pred CCCcccEEEcCCCCCC---------CHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCee------
Q psy3721 32 SVGTFKIFIGNVNPGT---------SVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIV------ 94 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~---------t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~------ 94 (207)
....++|||+||+..+ ++++|+++|+.||.|.++.+. +|||||+|.+.++|+.|++.|++..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 4467899999999998 799999999999999999998 89999999999999999999999999
Q ss_pred ------CCeeeEEEEcccCCC
Q psy3721 95 ------NEKPLKIEAATSRKG 109 (207)
Q Consensus 95 ------~g~~i~v~~~~~~~~ 109 (207)
.|+.|.|.|+.....
T Consensus 211 e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TGGGGGGSCCCEEEECC----
T ss_pred cccccCCCCEEEEEEccCCCC
Confidence 899999999986554
No 334
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.54 E-value=2.6e-15 Score=97.15 Aligned_cols=66 Identities=24% Similarity=0.473 Sum_probs=61.6
Q ss_pred eeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 116 ~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
+|||+|||.++++++|+++|+.||.|.++.+. +|+|||+|.+ ++|.+|+.. ++..+.|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 58999999999999999999999999999886 5799999999 999999986 999999999999875
No 335
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=4.7e-14 Score=105.05 Aligned_cols=73 Identities=26% Similarity=0.456 Sum_probs=68.3
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
...++|||+|||+.+++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|++.|++..++|+.|.|.++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 457899999999999999999999999999999986 469999999999999999999999999999999987
Q ss_pred c
Q psy3721 105 T 105 (207)
Q Consensus 105 ~ 105 (207)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 336
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.53 E-value=5e-14 Score=108.67 Aligned_cols=78 Identities=23% Similarity=0.434 Sum_probs=71.8
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
...++|||+|||..+++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|++.|++..++|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 345799999999999999999999999999999987 469999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy3721 105 TSRKGP 110 (207)
Q Consensus 105 ~~~~~~ 110 (207)
.....+
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 876543
No 337
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.53 E-value=6.3e-14 Score=106.67 Aligned_cols=78 Identities=23% Similarity=0.382 Sum_probs=72.1
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
..+.++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3567999999999999999999999999999999987 46999999999999999999999999999999999
Q ss_pred cccCCC
Q psy3721 104 ATSRKG 109 (207)
Q Consensus 104 ~~~~~~ 109 (207)
+.+...
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987543
No 338
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.53 E-value=4.5e-15 Score=107.66 Aligned_cols=77 Identities=10% Similarity=0.103 Sum_probs=67.4
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
.+...++|||+|||+++|+++|+++|+.|| +.++.+. +|||||+|.++++|++|+ .+++..+.|+.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999 6688886 679999999999999999 8899999999999998
Q ss_pred cccCCC
Q psy3721 104 ATSRKG 109 (207)
Q Consensus 104 ~~~~~~ 109 (207)
+.....
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876543
No 339
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.53 E-value=1.4e-14 Score=103.19 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=64.7
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceE--EEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVV--ECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~--~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
....++|||+|||+++|+++|+++|+.| .|. ++.+. +|||||+|.++++|++|++. ++..+.|+.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 3456889999999999999999999999 566 78776 68999999999999999974 7899999999998
Q ss_pred Eccc
Q psy3721 103 AATS 106 (207)
Q Consensus 103 ~~~~ 106 (207)
++..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8764
No 340
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=5.6e-15 Score=104.97 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=64.8
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCce----EEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEE
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKV----VECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i----~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 101 (207)
...++|||+|||+++|+++|+++|+.||.| .++.+. +|||||+|.++++|++|++. ++..++|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456899999999999999999999999975 467765 57999999999999999976 999999999999
Q ss_pred EEccc
Q psy3721 102 EAATS 106 (207)
Q Consensus 102 ~~~~~ 106 (207)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87754
No 341
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.52 E-value=5e-14 Score=120.26 Aligned_cols=78 Identities=22% Similarity=0.444 Sum_probs=72.1
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEE
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 102 (207)
...+.++|||+|||+.+|+++|.++|+.||.|..|.++ +|||||+|.+.++|..|++.|++..|.|+.|.|.
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999986 6799999999999999999999999999999999
Q ss_pred EcccCC
Q psy3721 103 AATSRK 108 (207)
Q Consensus 103 ~~~~~~ 108 (207)
++....
T Consensus 178 ~a~~~~ 183 (437)
T 3pgw_S 178 VERGRT 183 (437)
T ss_pred EeCCCC
Confidence 998643
No 342
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.52 E-value=3.1e-14 Score=111.50 Aligned_cols=77 Identities=22% Similarity=0.415 Sum_probs=72.1
Q ss_pred CCCCCCceeeecCCCC-CCChhHHHHhcccCCcEEEEEEe---cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 109 GPNTPTTKVFVGNLSD-NTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 109 ~~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~i~~~~~~---~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
...+++.+|||+|||. ++++++|+++|+.||.|.++++. +|||||+|.+ ++|.+|+..|||..+.|+.|+|.+++
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 3445688999999999 99999999999999999999998 7899999999 99999999999999999999999998
Q ss_pred Cc
Q psy3721 184 SR 185 (207)
Q Consensus 184 ~~ 185 (207)
+.
T Consensus 109 ~~ 110 (229)
T 2adc_A 109 HQ 110 (229)
T ss_dssp CC
T ss_pred Cc
Confidence 65
No 343
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.3e-13 Score=96.32 Aligned_cols=78 Identities=14% Similarity=0.236 Sum_probs=68.3
Q ss_pred CCCCCceeeecCCCCCCC-----------hhHHHHhcccCCcEEEEEEe----cCEEEEEEcc-HhHHHHHHHhCCceeC
Q psy3721 110 PNTPTTKVFVGNLSDNTR-----------APEVRELFVPYGTVVECDIV----RNYGFVHIDS-PDINKCIKELNGMMVD 173 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t-----------~~~l~~~f~~~g~i~~~~~~----~~~afv~f~~-e~a~~A~~~l~g~~~~ 173 (207)
.+.++.+|+|.||..... +++|+++|++||.|.++.+. +|+|||+|.+ ++|.+|+..|||..++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456688999999954332 58999999999999999776 7899999999 9999999999999999
Q ss_pred CeeEEEEeccCccC
Q psy3721 174 GKPMKVQISTSRVR 187 (207)
Q Consensus 174 g~~i~v~~~~~~~~ 187 (207)
|+.|+|.|+.+..+
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999987643
No 344
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.50 E-value=3e-14 Score=101.52 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=64.9
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEE--EEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVV--ECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~--~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
.....+|||+|||+++++++|+++|+.| .|. +|++. +|||||+|.+ ++|.+|+.. ++..++|+.|+|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 3456889999999999999999999999 566 88886 6899999999 999999985 7899999999999
Q ss_pred eccCc
Q psy3721 181 ISTSR 185 (207)
Q Consensus 181 ~~~~~ 185 (207)
.+.++
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 345
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=103.34 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=64.6
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcE----EEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTV----VECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i----~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
...+|||+|||+++|+++|+++|+.||.| .++.++ +|||||+|.+ ++|.+|+.. |+..++|+.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 46799999999999999999999999975 567765 6899999999 999999987 9999999999999
Q ss_pred eccCc
Q psy3721 181 ISTSR 185 (207)
Q Consensus 181 ~~~~~ 185 (207)
.+.+.
T Consensus 101 ~a~~~ 105 (123)
T 2dha_A 101 RSTAA 105 (123)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88754
No 346
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.49 E-value=1.1e-13 Score=111.30 Aligned_cols=77 Identities=18% Similarity=0.512 Sum_probs=70.7
Q ss_pred CCCCCceeeecCCCCCCChhHHH----HhcccCCcEEEEEEe-----cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVR----ELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~----~~f~~~g~i~~~~~~-----~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v 179 (207)
+..+.++|||+|||+++++++|+ ++|+.||.|.+|++. +|||||+|.+ ++|.+|+..|||..+.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 34567899999999999999977 899999999999987 5899999999 9999999999999999999999
Q ss_pred EeccCcc
Q psy3721 180 QISTSRV 186 (207)
Q Consensus 180 ~~~~~~~ 186 (207)
.|++...
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9997654
No 347
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.49 E-value=1.4e-13 Score=95.12 Aligned_cols=74 Identities=24% Similarity=0.347 Sum_probs=65.6
Q ss_pred CCCceeeecCCCC-----CCChhHHHHhcccCCcEEEEEEe---------cCEEEEEEcc-HhHHHHHHHhCCceeCCee
Q psy3721 112 TPTTKVFVGNLSD-----NTRAPEVRELFVPYGTVVECDIV---------RNYGFVHIDS-PDINKCIKELNGMMVDGKP 176 (207)
Q Consensus 112 ~~~~~l~v~nl~~-----~~t~~~l~~~f~~~g~i~~~~~~---------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~ 176 (207)
.++.+|++.|+.. +-++++|++.|++||.|.++.+. +|+|||+|.+ ++|.+|+..|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 24789999999999999999986 4799999999 9999999999999999999
Q ss_pred EEEEeccCc
Q psy3721 177 MKVQISTSR 185 (207)
Q Consensus 177 i~v~~~~~~ 185 (207)
|.|.++.+.
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999999764
No 348
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.49 E-value=4.6e-14 Score=107.76 Aligned_cols=73 Identities=23% Similarity=0.449 Sum_probs=69.4
Q ss_pred CceeeecCCCC-CCChhHHHHhcccCCcEEEEEEe---cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCcc
Q psy3721 114 TTKVFVGNLSD-NTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186 (207)
Q Consensus 114 ~~~l~v~nl~~-~~t~~~l~~~f~~~g~i~~~~~~---~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 186 (207)
+++|||+|||. ++++++|+++|+.||.|.++++. +|+|||+|.+ ++|.+|+..|||..+.|+.|+|.++++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 57999999999 99999999999999999999998 7899999999 99999999999999999999999998653
No 349
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.49 E-value=1.1e-13 Score=103.38 Aligned_cols=75 Identities=8% Similarity=0.223 Sum_probs=68.5
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE----CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccC
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV----KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~----~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 107 (207)
....++|||+|||+.+++++|+++|+.||.|..+ .. +|||||+|.+.++|.+|+..|++..+.|+.|+|.++.++
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 3467899999999999999999999999999877 22 689999999999999999999999999999999998764
No 350
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=8.9e-14 Score=97.38 Aligned_cols=69 Identities=22% Similarity=0.393 Sum_probs=58.4
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-----------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEE
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKI 101 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-----------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 101 (207)
...++|||+|||+++++++|+++|+.||.|. +.+. +|||||+|.+.++|++|++.++ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999998 5553 5799999999999999999883 366666666
Q ss_pred EEc
Q psy3721 102 EAA 104 (207)
Q Consensus 102 ~~~ 104 (207)
...
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 351
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.48 E-value=1.2e-13 Score=104.93 Aligned_cols=77 Identities=26% Similarity=0.519 Sum_probs=68.3
Q ss_pred CCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
......+|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+ ++|.+|+.. +|..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 34567899999999999999999999999999999987 5699999999 999999977 9999999999999
Q ss_pred eccCccC
Q psy3721 181 ISTSRVR 187 (207)
Q Consensus 181 ~~~~~~~ 187 (207)
++.+...
T Consensus 88 ~~~~~~~ 94 (196)
T 1l3k_A 88 RAVSRED 94 (196)
T ss_dssp ECCC---
T ss_pred cccCccc
Confidence 9987643
No 352
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=1.1e-13 Score=110.42 Aligned_cols=75 Identities=28% Similarity=0.576 Sum_probs=70.3
Q ss_pred CCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
....++|||+|||.++|+++|+++|+.||.|..+.+. +|+|||+|.+ ++|.+|+..|||..+.|+.|+|.++.+.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 3456799999999999999999999999999999998 8899999999 9999999999999999999999999763
No 353
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.48 E-value=1.6e-13 Score=102.20 Aligned_cols=74 Identities=26% Similarity=0.498 Sum_probs=67.0
Q ss_pred CCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeC---CeeeEE
Q psy3721 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVN---EKPLKI 101 (207)
Q Consensus 32 ~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~---g~~i~v 101 (207)
....++|||+|||+.+|+++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.|++..+. ++.|+|
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 3467899999999999999999999999999999987 469999999999999999999998775 499999
Q ss_pred EEcc
Q psy3721 102 EAAT 105 (207)
Q Consensus 102 ~~~~ 105 (207)
.|+.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9863
No 354
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.47 E-value=5.1e-14 Score=104.32 Aligned_cols=74 Identities=19% Similarity=0.439 Sum_probs=68.1
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
...++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++ +++..+.|+.|+|.++
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 346799999999999999999999999999999887 3699999999999999997 8999999999999998
Q ss_pred ccC
Q psy3721 105 TSR 107 (207)
Q Consensus 105 ~~~ 107 (207)
.++
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.2e-13 Score=93.16 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=68.4
Q ss_pred CCCCcccEEEcCCCCCCC-----------HHHHHHHhhcCCceEEEEEE----CCEEEEEeCChHHHHHHHHHhcCCeeC
Q psy3721 31 SSVGTFKIFIGNVNPGTS-----------VELIRPLFEKYGKVVECDVV----KNYGFVHMENDEEGRTAIKELNGQIVN 95 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t-----------~~~l~~~f~~~g~i~~i~~~----~~~~fV~f~~~~~a~~a~~~l~~~~~~ 95 (207)
.+.++++|+|.||..... +++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.|++..+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 445688999999954432 58999999999999999776 799999999999999999999999999
Q ss_pred CeeeEEEEcccCC
Q psy3721 96 EKPLKIEAATSRK 108 (207)
Q Consensus 96 g~~i~v~~~~~~~ 108 (207)
|+.|+|.++.+..
T Consensus 91 gr~l~v~~a~~~~ 103 (112)
T 2dit_A 91 GRQITAQAWDGTT 103 (112)
T ss_dssp TEECEEEECCSCC
T ss_pred CcEEEEEEeCCCC
Confidence 9999999987654
No 356
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.45 E-value=2.7e-13 Score=103.62 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=66.0
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
..++|||+|||+.+++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|+..+ +..+.|+.|.|.+...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 35899999999999999999999999999999887 589999999999999999765 4589999999998764
Q ss_pred C
Q psy3721 107 R 107 (207)
Q Consensus 107 ~ 107 (207)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 357
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.45 E-value=5.1e-13 Score=92.24 Aligned_cols=74 Identities=23% Similarity=0.239 Sum_probs=66.0
Q ss_pred CCcccEEEcCCCC-----CCCHHHHHHHhhcCCceEEEEEE---------CCEEEEEeCChHHHHHHHHHhcCCeeCCee
Q psy3721 33 VGTFKIFIGNVNP-----GTSVELIRPLFEKYGKVVECDVV---------KNYGFVHMENDEEGRTAIKELNGQIVNEKP 98 (207)
Q Consensus 33 ~~~~~l~V~~lp~-----~~t~~~l~~~f~~~g~i~~i~~~---------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~ 98 (207)
.++++|+|.|+.. +-++++|++.|+.||.|.++.+. +|+|||+|.+.++|.+|++.|||..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999973 24789999999999999999986 469999999999999999999999999999
Q ss_pred eEEEEccc
Q psy3721 99 LKIEAATS 106 (207)
Q Consensus 99 i~v~~~~~ 106 (207)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.45 E-value=2e-13 Score=96.50 Aligned_cols=71 Identities=13% Similarity=0.261 Sum_probs=64.5
Q ss_pred ceeeecCC----CCCCChhHHHHhcccCCcEEEEEEe--------cCEEEEEEc------cHh---HHHHHH--HhCCce
Q psy3721 115 TKVFVGNL----SDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHID------SPD---INKCIK--ELNGMM 171 (207)
Q Consensus 115 ~~l~v~nl----~~~~t~~~l~~~f~~~g~i~~~~~~--------~~~afv~f~------~e~---a~~A~~--~l~g~~ 171 (207)
..|||+|| |+.+++++|+.+|+.||+|.++.++ +|||||+|. +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999997 789999998 322 788888 789999
Q ss_pred eCCeeEEEEeccCc
Q psy3721 172 VDGKPMKVQISTSR 185 (207)
Q Consensus 172 ~~g~~i~v~~~~~~ 185 (207)
++|+.|+|.+.+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999998764
No 359
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4.8e-13 Score=93.60 Aligned_cols=68 Identities=26% Similarity=0.414 Sum_probs=55.9
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe-----------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEE
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~-----------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v 179 (207)
...++|||+|||+++++++|+++|+.||.|. +.++ +|||||+|.+ ++|.+|+..|+ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3468999999999999999999999999998 6554 5799999999 99999999983 245555554
Q ss_pred Eec
Q psy3721 180 QIS 182 (207)
Q Consensus 180 ~~~ 182 (207)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 433
No 360
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.7e-12 Score=88.70 Aligned_cols=82 Identities=12% Similarity=0.197 Sum_probs=65.9
Q ss_pred CeeeEEEEcccCCCCCCCCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe---cCEEEEEEcc-HhHHHHHHHhCCce
Q psy3721 96 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMM 171 (207)
Q Consensus 96 g~~i~v~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~---~~~afv~f~~-e~a~~A~~~l~g~~ 171 (207)
..+|+|.|....... -+..+++++|+++|++||.|.++.+. +|||||+|.+ ++|.+|+..+++
T Consensus 10 ~~~~~v~w~~~~~~~-----------~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~-- 76 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDE-----------SKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG-- 76 (100)
T ss_dssp SCEEEEECCCCSSCS-----------CCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--
T ss_pred cceEEEeeeccCccC-----------cCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--
Confidence 356777775532211 14679999999999999999999996 7899999999 999999998555
Q ss_pred eCCeeEEEEeccCccCCCC
Q psy3721 172 VDGKPMKVQISTSRVRQRP 190 (207)
Q Consensus 172 ~~g~~i~v~~~~~~~~~~~ 190 (207)
+.|++|+|.|+++.+...+
T Consensus 77 ~~g~~l~V~~a~~~~~~~~ 95 (100)
T 2d9o_A 77 LVDNPLKISWLEGQPQDAS 95 (100)
T ss_dssp CSSSBCEEECSSCCCCCCS
T ss_pred CCCCeEEEEEccCCCCCCC
Confidence 6799999999988765443
No 361
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.40 E-value=4.3e-13 Score=94.77 Aligned_cols=70 Identities=13% Similarity=0.222 Sum_probs=62.0
Q ss_pred ccEEEcCC----CCCCCHHHHHHHhhcCCceEEEEEE--------CCEEEEEeCC----hHH----HHHHHH--HhcCCe
Q psy3721 36 FKIFIGNV----NPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMEN----DEE----GRTAIK--ELNGQI 93 (207)
Q Consensus 36 ~~l~V~~l----p~~~t~~~l~~~f~~~g~i~~i~~~--------~~~~fV~f~~----~~~----a~~a~~--~l~~~~ 93 (207)
+.|||+|| |+.+++++|+++|+.||+|.++.+. +|||||+|.+ +++ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999987 6899999996 323 888988 789999
Q ss_pred eCCeeeEEEEcc
Q psy3721 94 VNEKPLKIEAAT 105 (207)
Q Consensus 94 ~~g~~i~v~~~~ 105 (207)
+.|+.|+|..-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999654
No 362
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.38 E-value=1.2e-12 Score=90.32 Aligned_cols=74 Identities=22% Similarity=0.290 Sum_probs=64.7
Q ss_pred CCCceeeecCC--CCCCC--------hhHHHHhcccCCcEEEEEEe----------cCEEEEEEcc-HhHHHHHHHhCCc
Q psy3721 112 TPTTKVFVGNL--SDNTR--------APEVRELFVPYGTVVECDIV----------RNYGFVHIDS-PDINKCIKELNGM 170 (207)
Q Consensus 112 ~~~~~l~v~nl--~~~~t--------~~~l~~~f~~~g~i~~~~~~----------~~~afv~f~~-e~a~~A~~~l~g~ 170 (207)
.|+..|.+.|+ |..+. .++|++.|++||.|.++.++ +|+|||+|.+ ++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46788999998 33443 37999999999999999986 4799999999 9999999999999
Q ss_pred eeCCeeEEEEeccCc
Q psy3721 171 MVDGKPMKVQISTSR 185 (207)
Q Consensus 171 ~~~g~~i~v~~~~~~ 185 (207)
.++|+.|++.|..+.
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998754
No 363
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.33 E-value=3.1e-12 Score=105.52 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=64.5
Q ss_pred CCCCceeeecC--CCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCceeC---Ce--eEEEE
Q psy3721 111 NTPTTKVFVGN--LSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVD---GK--PMKVQ 180 (207)
Q Consensus 111 ~~~~~~l~v~n--l~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~~---g~--~i~v~ 180 (207)
..++.+|||+| |++.+++++|+++|++||.|.++.+. ||||||+|.+ ++|.+|+..|||+.+. |+ .+.+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 45678999999 57899999999999999999999885 8999999999 9999999999999973 44 57777
Q ss_pred ecc
Q psy3721 181 IST 183 (207)
Q Consensus 181 ~~~ 183 (207)
|..
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 774
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.32 E-value=6.1e-12 Score=86.78 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=63.7
Q ss_pred CcccEEEcCCC--CCCC--------HHHHHHHhhcCCceEEEEEE----------CCEEEEEeCChHHHHHHHHHhcCCe
Q psy3721 34 GTFKIFIGNVN--PGTS--------VELIRPLFEKYGKVVECDVV----------KNYGFVHMENDEEGRTAIKELNGQI 93 (207)
Q Consensus 34 ~~~~l~V~~lp--~~~t--------~~~l~~~f~~~g~i~~i~~~----------~~~~fV~f~~~~~a~~a~~~l~~~~ 93 (207)
+++.|.+.|+- .... +++|++.|++||.|.++.+. +|+|||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 56788999983 3333 36899999999999999986 4799999999999999999999999
Q ss_pred eCCeeeEEEEccc
Q psy3721 94 VNEKPLKIEAATS 106 (207)
Q Consensus 94 ~~g~~i~v~~~~~ 106 (207)
+.|+.|+|.+...
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998764
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.31 E-value=5.6e-12 Score=104.02 Aligned_cols=73 Identities=29% Similarity=0.383 Sum_probs=63.5
Q ss_pred CCCcccEEEcC--CCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCee---CCe--eeEEE
Q psy3721 32 SVGTFKIFIGN--VNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIV---NEK--PLKIE 102 (207)
Q Consensus 32 ~~~~~~l~V~~--lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~---~g~--~i~v~ 102 (207)
+.++.+|||+| |+.++|+++|+++|++||.|.++.+. +|||||+|.+.++|++|++.|||..+ .|+ .+.+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 35678999999 57889999999999999999998875 89999999999999999999999987 244 46666
Q ss_pred Ec
Q psy3721 103 AA 104 (207)
Q Consensus 103 ~~ 104 (207)
+.
T Consensus 95 ~~ 96 (345)
T 3tht_A 95 FV 96 (345)
T ss_dssp EC
T ss_pred Ee
Confidence 65
No 366
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=5.6e-11 Score=81.11 Aligned_cols=73 Identities=21% Similarity=0.235 Sum_probs=61.0
Q ss_pred cccEEEcCCC-------CCCCHHHHHHHhhcCCceEEEEEE---CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 35 TFKIFIGNVN-------PGTSVELIRPLFEKYGKVVECDVV---KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 35 ~~~l~V~~lp-------~~~t~~~l~~~f~~~g~i~~i~~~---~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
..+|.|.-.. ..+++++|+++|+.||.|.++.+. +|||||+|.++++|+.|++.++ .+.|+.|+|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEc
Confidence 4466665544 458999999999999999999996 7899999999999999998744 467999999998
Q ss_pred ccCCC
Q psy3721 105 TSRKG 109 (207)
Q Consensus 105 ~~~~~ 109 (207)
.....
T Consensus 88 ~~~~~ 92 (100)
T 2d9o_A 88 EGQPQ 92 (100)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 86653
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.29 E-value=1.3e-11 Score=86.88 Aligned_cols=73 Identities=23% Similarity=0.297 Sum_probs=63.6
Q ss_pred CCceeeecCCCC--C---CChhHHHHhcccCCcEEEEEEe------------cCEEEEEEcc-HhHHHHHHHhCCceeCC
Q psy3721 113 PTTKVFVGNLSD--N---TRAPEVRELFVPYGTVVECDIV------------RNYGFVHIDS-PDINKCIKELNGMMVDG 174 (207)
Q Consensus 113 ~~~~l~v~nl~~--~---~t~~~l~~~f~~~g~i~~~~~~------------~~~afv~f~~-e~a~~A~~~l~g~~~~g 174 (207)
++.+|++.|+-. . -.+++|++.|++||.|.++.++ +|++||+|.+ ++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567899999832 2 2368999999999999999986 1689999999 99999999999999999
Q ss_pred eeEEEEeccCc
Q psy3721 175 KPMKVQISTSR 185 (207)
Q Consensus 175 ~~i~v~~~~~~ 185 (207)
+.|.+.|+...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998753
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.29 E-value=9.4e-13 Score=90.73 Aligned_cols=64 Identities=23% Similarity=0.446 Sum_probs=56.4
Q ss_pred ecCCCCCCChhHHHHhc------------ccCCcEEEEEEe-------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEE
Q psy3721 119 VGNLSDNTRAPEVRELF------------VPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMK 178 (207)
Q Consensus 119 v~nl~~~~t~~~l~~~f------------~~~g~i~~~~~~-------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~ 178 (207)
+.+|+..+++++|++.| ++||.|.++.+. +|+|||+|.+ ++|.+|+..|||..++|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45677777777776666 999999999997 6899999999 999999999999999999999
Q ss_pred EEec
Q psy3721 179 VQIS 182 (207)
Q Consensus 179 v~~~ 182 (207)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.28 E-value=1.2e-11 Score=86.50 Aligned_cols=75 Identities=16% Similarity=0.126 Sum_probs=63.9
Q ss_pred CCCCceeeecCCCCCC----------ChhHHHHhcccCCcEEEEEEe----cCEEEEEEcc-HhHHHHHHHhCCceeCCe
Q psy3721 111 NTPTTKVFVGNLSDNT----------RAPEVRELFVPYGTVVECDIV----RNYGFVHIDS-PDINKCIKELNGMMVDGK 175 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~~----------t~~~l~~~f~~~g~i~~~~~~----~~~afv~f~~-e~a~~A~~~l~g~~~~g~ 175 (207)
+.++.+|.+.|+=..- .+++|++.|++||.|.++.+. +|+|||+|.+ ++|.+|+..|||..++|+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3456788888873321 136889999999999999997 6899999999 999999999999999999
Q ss_pred eEEEEeccCc
Q psy3721 176 PMKVQISTSR 185 (207)
Q Consensus 176 ~i~v~~~~~~ 185 (207)
.|.|.|+...
T Consensus 84 ~i~v~~~~~~ 93 (114)
T 3s6e_A 84 MITAAYVPLP 93 (114)
T ss_dssp ECEEEEECHH
T ss_pred EEEEEEEcHH
Confidence 9999999744
No 370
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.5e-11 Score=81.48 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=63.1
Q ss_pred CCCceeeecCCCC----CCCh----hHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEec
Q psy3721 112 TPTTKVFVGNLSD----NTRA----PEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIS 182 (207)
Q Consensus 112 ~~~~~l~v~nl~~----~~t~----~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~ 182 (207)
++..+|+|.-.+. ..-+ .+|.+.|..||.|..+++..+.+||+|.+ ++|.+|+. |||..++|+.|+|.++
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 4566777776652 3334 77899999999999999999999999999 99999998 9999999999999999
Q ss_pred cCc
Q psy3721 183 TSR 185 (207)
Q Consensus 183 ~~~ 185 (207)
++.
T Consensus 84 t~d 86 (91)
T 2dnr_A 84 SPS 86 (91)
T ss_dssp CCS
T ss_pred CCC
Confidence 875
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.27 E-value=3.1e-11 Score=84.36 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=63.9
Q ss_pred CCcccEEEcCCCCCCC----------HHHHHHHhhcCCceEEEEEE----CCEEEEEeCChHHHHHHHHHhcCCeeCCee
Q psy3721 33 VGTFKIFIGNVNPGTS----------VELIRPLFEKYGKVVECDVV----KNYGFVHMENDEEGRTAIKELNGQIVNEKP 98 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t----------~~~l~~~f~~~g~i~~i~~~----~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~ 98 (207)
.+++.|.+.|+=..-. +++|++.|+.||.|.++.+. +|+|||+|.+.++|.+|++.|||..+.|+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4677888888854322 34789999999999999987 589999999999999999999999999999
Q ss_pred eEEEEccc
Q psy3721 99 LKIEAATS 106 (207)
Q Consensus 99 i~v~~~~~ 106 (207)
|+|.++..
T Consensus 85 i~v~~~~~ 92 (114)
T 3s6e_A 85 ITAAYVPL 92 (114)
T ss_dssp CEEEEECH
T ss_pred EEEEEEcH
Confidence 99999864
No 372
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.26 E-value=2.3e-12 Score=88.75 Aligned_cols=66 Identities=24% Similarity=0.425 Sum_probs=57.8
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCceEEEEEE-------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeE
Q psy3721 40 IGNVNPGTSVELIRPLF------------EKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLK 100 (207)
Q Consensus 40 V~~lp~~~t~~~l~~~f------------~~~g~i~~i~~~-------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 100 (207)
+.+||..+++++|++.| +.||.|.++.+. +|||||+|.++++|.+|++.|||..+.|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56677777787777666 999999999997 57999999999999999999999999999999
Q ss_pred EEEcc
Q psy3721 101 IEAAT 105 (207)
Q Consensus 101 v~~~~ 105 (207)
|.++.
T Consensus 100 v~~sp 104 (104)
T 1jmt_A 100 AELSP 104 (104)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 98863
No 373
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.24 E-value=4.1e-11 Score=84.29 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=63.5
Q ss_pred CcccEEEcCCCC-----CCCHHHHHHHhhcCCceEEEEEEC------------CEEEEEeCChHHHHHHHHHhcCCeeCC
Q psy3721 34 GTFKIFIGNVNP-----GTSVELIRPLFEKYGKVVECDVVK------------NYGFVHMENDEEGRTAIKELNGQIVNE 96 (207)
Q Consensus 34 ~~~~l~V~~lp~-----~~t~~~l~~~f~~~g~i~~i~~~~------------~~~fV~f~~~~~a~~a~~~l~~~~~~g 96 (207)
++++|++.|+-. +--+++|++.|+.||.|.++.+.+ |++||+|.+.++|.+|++.|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467899999842 124689999999999999998861 689999999999999999999999999
Q ss_pred eeeEEEEccc
Q psy3721 97 KPLKIEAATS 106 (207)
Q Consensus 97 ~~i~v~~~~~ 106 (207)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998764
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=7e-10 Score=73.45 Aligned_cols=73 Identities=12% Similarity=0.198 Sum_probs=61.9
Q ss_pred cccEEEcCCC----CCCCH----HHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 35 TFKIFIGNVN----PGTSV----ELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 35 ~~~l~V~~lp----~~~t~----~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
.-+|+|...+ ...-+ .+|.+.|+.||.|..+++..+.+||+|.+.++|..|+. |+|..+.|+.|+|...++
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 3466666555 23444 67899999999999999999999999999999999997 999999999999999886
Q ss_pred CC
Q psy3721 107 RK 108 (207)
Q Consensus 107 ~~ 108 (207)
..
T Consensus 86 dW 87 (91)
T 2dnr_A 86 SG 87 (91)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=6.8e-10 Score=77.96 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=65.5
Q ss_pred CCCCCceeeecCCCCC-CChhHHHHhcccCCcEEEEEEecC--EEEEEEcc--HhHHHHHHHhC--CceeCCeeEEEEec
Q psy3721 110 PNTPTTKVFVGNLSDN-TRAPEVRELFVPYGTVVECDIVRN--YGFVHIDS--PDINKCIKELN--GMMVDGKPMKVQIS 182 (207)
Q Consensus 110 ~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~i~~~~~~~~--~afv~f~~--e~a~~A~~~l~--g~~~~g~~i~v~~~ 182 (207)
.-+++..|+|+||++. ++.++|+++|+.||.|.+|.+.++ .|||+|.+ ++|..|+..|| |..+.|..+++...
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 3456889999999999 999999999999999999999854 89999999 58999999995 77799998888766
Q ss_pred c
Q psy3721 183 T 183 (207)
Q Consensus 183 ~ 183 (207)
.
T Consensus 94 ~ 94 (121)
T 1owx_A 94 E 94 (121)
T ss_dssp C
T ss_pred C
Confidence 5
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=8.4e-10 Score=77.50 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=64.9
Q ss_pred CCcccEEEcCCCCC-CCHHHHHHHhhcCCceEEEEEECC--EEEEEeCC-hHHHHHHHHHhc--CCeeCCeeeEEEEcc
Q psy3721 33 VGTFKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKN--YGFVHMEN-DEEGRTAIKELN--GQIVNEKPLKIEAAT 105 (207)
Q Consensus 33 ~~~~~l~V~~lp~~-~t~~~l~~~f~~~g~i~~i~~~~~--~~fV~f~~-~~~a~~a~~~l~--~~~~~g~~i~v~~~~ 105 (207)
...+.|||+||++. ++.++|+++|+.||+|..|.+.+| .|||.|.+ .++|..|++.++ +..+.|..+++....
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 45689999999999 999999999999999999999854 89999999 799999999985 677889888887654
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=4.2e-10 Score=74.90 Aligned_cols=73 Identities=22% Similarity=0.288 Sum_probs=62.9
Q ss_pred CCCCceeeecCCCCC-----CCh----hHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEE
Q psy3721 111 NTPTTKVFVGNLSDN-----TRA----PEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQ 180 (207)
Q Consensus 111 ~~~~~~l~v~nl~~~-----~t~----~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~ 180 (207)
.++..+|+|.-++.+ .-+ .+|.+.|..||.|..+++..+.+||+|.+ ++|.+|+. |||..++|+.|+|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~ 90 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVKGRAVKIS 90 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEETTEEEEEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeCCeEEEEe
Confidence 356678888877643 223 66889999999999999999999999999 99999998 99999999999999
Q ss_pred eccC
Q psy3721 181 ISTS 184 (207)
Q Consensus 181 ~~~~ 184 (207)
+..+
T Consensus 91 ~k~~ 94 (95)
T 1ufw_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8654
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=1.5e-08 Score=67.42 Aligned_cols=71 Identities=13% Similarity=0.238 Sum_probs=60.3
Q ss_pred CcccEEEcCCCCC-----CCH----HHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEc
Q psy3721 34 GTFKIFIGNVNPG-----TSV----ELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA 104 (207)
Q Consensus 34 ~~~~l~V~~lp~~-----~t~----~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 104 (207)
+.-||+|..++.. +-+ .+|.+.|+.||.|..+++..+-+||+|.+.++|.+|+. |+|..+.|+.|+|.+.
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEETTEEEEEECC
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeCCeEEEEecc
Confidence 4457778777632 333 56888999999999999999999999999999999997 9999999999999865
Q ss_pred c
Q psy3721 105 T 105 (207)
Q Consensus 105 ~ 105 (207)
.
T Consensus 93 ~ 93 (95)
T 1ufw_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.66 E-value=5e-08 Score=75.58 Aligned_cols=60 Identities=23% Similarity=0.268 Sum_probs=54.9
Q ss_pred CChhHHHHhcccCCcEEEEEEe------------cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 126 TRAPEVRELFVPYGTVVECDIV------------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 126 ~t~~~l~~~f~~~g~i~~~~~~------------~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
-.+++|++.|++||.|.++.+. +|++||+|.+ ++|.+|+..|||..+.|+.|.+.|....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 4568999999999999999986 4799999999 9999999999999999999999998654
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.3e-07 Score=64.22 Aligned_cols=72 Identities=17% Similarity=0.126 Sum_probs=65.8
Q ss_pred CCCceeeecCCCCCCChhHHHHhcccC-----CcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 112 TPTTKVFVGNLSDNTRAPEVRELFVPY-----GTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~-----g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
...++|-+-+||..+++..|+.+.+++ |.+..+.+. .+-|+|+|.+ ..|.+|...|||..|.|+.|++.-..
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv~ 98 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTIN 98 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECHH
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCHH
Confidence 346789999999999999999999999 999999998 5679999999 99999999999999999999997654
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.57 E-value=1.7e-07 Score=72.61 Aligned_cols=60 Identities=20% Similarity=0.173 Sum_probs=54.7
Q ss_pred CCHHHHHHHhhcCCceEEEEEE------------CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEccc
Q psy3721 47 TSVELIRPLFEKYGKVVECDVV------------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106 (207)
Q Consensus 47 ~t~~~l~~~f~~~g~i~~i~~~------------~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 106 (207)
-.+++|++.|+.||.|.++.+. +|++||+|.+.++|.+|++.|+|..+.|+.|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4567899999999999999986 36999999999999999999999999999999998763
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.53 E-value=6.5e-07 Score=60.81 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=65.7
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcC-----CceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEE
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKY-----GKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEA 103 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~-----g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 103 (207)
+..++|-+-|||-.+++.-|+.+.+++ |.+.++.+. .+-|+|+|.+...|-+|.-.|+|..|.|+.|++..
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 346799999999999999999999999 999999998 56799999999999999999999999999999874
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=2.9e-06 Score=57.08 Aligned_cols=90 Identities=16% Similarity=0.293 Sum_probs=76.2
Q ss_pred CCcccEEEcCCCCCCCHHHHHHHhhcC-----CceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccC
Q psy3721 33 VGTFKIFIGNVNPGTSVELIRPLFEKY-----GKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107 (207)
Q Consensus 33 ~~~~~l~V~~lp~~~t~~~l~~~f~~~-----g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 107 (207)
....+|.|.|||+.+.++.|.-.|+.- |+|.++....+-|+|+|.+.+.|++.++ -....+++..|.|.+..+.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~~~ 84 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLA-QADHELHGAQLSLRPAPPR 84 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECCCC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCCCC
Confidence 346799999999999999999999862 5799999989999999999999999885 2467889999999987655
Q ss_pred CCCCCCCceeeecCCCCCCCh
Q psy3721 108 KGPNTPTTKVFVGNLSDNTRA 128 (207)
Q Consensus 108 ~~~~~~~~~l~v~nl~~~~t~ 128 (207)
. ..+|++.+|++.++.
T Consensus 85 ~-----~~r~ll~gl~~~t~~ 100 (104)
T 2dhx_A 85 A-----PARLLLQGLPPGTSG 100 (104)
T ss_dssp C-----CCCCCCCSCCCCCCC
T ss_pred C-----cceEeeecCCCCCCC
Confidence 4 468999999998764
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.04 E-value=2.2e-05 Score=53.02 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=61.9
Q ss_pred CceeeecCCCCCC-Ch----hHHHHhcccCCcEEEEEEecC--EEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCc
Q psy3721 114 TTKVFVGNLSDNT-RA----PEVRELFVPYGTVVECDIVRN--YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185 (207)
Q Consensus 114 ~~~l~v~nl~~~~-t~----~~l~~~f~~~g~i~~~~~~~~--~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~ 185 (207)
.++|+|.||+..+ .. +.++++|..|+.+......+. ...|.|.+ ++|.+|-..||+..++|+.++|.|+.+.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 4689999998854 32 567899999998888877755 57888999 9999999999999999999999999854
Q ss_pred c
Q psy3721 186 V 186 (207)
Q Consensus 186 ~ 186 (207)
.
T Consensus 85 ~ 85 (104)
T 1wey_A 85 H 85 (104)
T ss_dssp S
T ss_pred C
Confidence 3
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.02 E-value=1.9e-05 Score=53.28 Aligned_cols=73 Identities=18% Similarity=0.147 Sum_probs=62.9
Q ss_pred cccEEEcCCCCCC-CH----HHHHHHhhcCCceEEEEEECCE--EEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcccC
Q psy3721 35 TFKIFIGNVNPGT-SV----ELIRPLFEKYGKVVECDVVKNY--GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107 (207)
Q Consensus 35 ~~~l~V~~lp~~~-t~----~~l~~~f~~~g~i~~i~~~~~~--~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 107 (207)
.++|+|.||+..+ .. +.++++|..|+++......+.| ..|.|.++++|.+|...||+..+.|+++++..+.+.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 4589999998864 32 4678999999999888888654 789999999999999999999999999999998743
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=0.00018 Score=48.36 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=62.4
Q ss_pred CCceeeecCCCCCCChhHHHHhcccC-----CcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCceeCCeeEEEEeccCcc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPY-----GTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~-----g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 186 (207)
...+|.|.|||..++++.|.-+|+.- |.|+++....+-|.|+|.+ +.|++.+.. ..+.|+|.+|.|.-..+..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~~~ 85 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPPRA 85 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCCCC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCCCC
Confidence 45789999999999999999999762 4899999999999999999 887776665 5778899999997766554
Q ss_pred CC
Q psy3721 187 RQ 188 (207)
Q Consensus 187 ~~ 188 (207)
..
T Consensus 86 ~~ 87 (104)
T 2dhx_A 86 PA 87 (104)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.84 E-value=7.5e-05 Score=49.41 Aligned_cols=61 Identities=11% Similarity=0.195 Sum_probs=51.9
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEEC----------CEEEEEeCChHHHHHHHHHhcCCeeCC
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK----------NYGFVHMENDEEGRTAIKELNGQIVNE 96 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~----------~~~fV~f~~~~~a~~a~~~l~~~~~~g 96 (207)
++|.|.+|||++|++++.+.++.+..+.-..... .-|+|.|.+.+++....+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5789999999999999999999988765444442 259999999999999999999998844
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.68 E-value=0.00029 Score=46.80 Aligned_cols=59 Identities=12% Similarity=0.181 Sum_probs=48.5
Q ss_pred CCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhc
Q psy3721 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELN 90 (207)
Q Consensus 31 ~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~ 90 (207)
++.-.+.+++ .+|+.+...||.++|+.||.+.=-++--..|||.|.+++.|..|+..+.
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 3344556666 9999999999999999999775555557799999999999999998653
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.55 E-value=0.00047 Score=47.69 Aligned_cols=83 Identities=11% Similarity=0.208 Sum_probs=61.2
Q ss_pred eecccCCCCCCCCCcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEE--CCEEEEEeCChHHHHHHHHHhcCCeeC-Ce
Q psy3721 21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVN-EK 97 (207)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~--~~~~fV~f~~~~~a~~a~~~l~~~~~~-g~ 97 (207)
.....++........+-|.|-+.|+.. .+.+...|+.||.|.+.... .++..|.|.++.+|++|+ ..||..+. +.
T Consensus 10 ~~~~~~l~~~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~ 87 (119)
T 1wwh_A 10 YTQGDSLTSEDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKAL-SKDGRIFGESI 87 (119)
T ss_dssp -----------CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHH-TTTTCEETTTE
T ss_pred eeCCcccCCCCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHH-HhCCeEecCCE
Confidence 344555556566678899999999885 56677889999999998885 479999999999999999 45999997 47
Q ss_pred eeEEEEcc
Q psy3721 98 PLKIEAAT 105 (207)
Q Consensus 98 ~i~v~~~~ 105 (207)
.|-|.+..
T Consensus 88 mIGV~p~~ 95 (119)
T 1wwh_A 88 MIGVKPCI 95 (119)
T ss_dssp ECEEEECC
T ss_pred EEEEEECC
Confidence 78888764
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.31 E-value=0.0014 Score=43.24 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=53.0
Q ss_pred ceeeecCCCCCCChhHHHHhcccCCcEEEEEEecC----------EEEEEEcc-HhHHHHHHHhCCceeCC
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN----------YGFVHIDS-PDINKCIKELNGMMVDG 174 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~----------~afv~f~~-e~a~~A~~~l~g~~~~g 174 (207)
.+|.|.+||+++|++++.+.+.....+.....++| .|+|.|.+ +++..-...++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 36899999999999999999999988877777633 79999999 99999999999999754
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.30 E-value=0.00054 Score=45.64 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=45.5
Q ss_pred ccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhc
Q psy3721 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELN 90 (207)
Q Consensus 36 ~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~ 90 (207)
+.+++ ++|+.+...||.++|+.||.+.=-++--..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999664444446799999999999999998764
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.11 E-value=0.00052 Score=45.72 Aligned_cols=63 Identities=11% Similarity=0.194 Sum_probs=48.9
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEEC----------CEEEEEeCChHHHHHHHHHhcCCeeCC
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK----------NYGFVHMENDEEGRTAIKELNGQIVNE 96 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~----------~~~fV~f~~~~~a~~a~~~l~~~~~~g 96 (207)
-+.+|.|..|||++|++++.+.++.+-++.-..... .-|+|.|.+.++.....+.++|..+.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 356899999999999999988887654432111111 358999999999999999999998843
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.09 E-value=0.0024 Score=42.40 Aligned_cols=54 Identities=13% Similarity=0.292 Sum_probs=46.6
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhC
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELN 168 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~ 168 (207)
...+++ ++|+.....||.++|+.||.|.--.+....|||.|.+ +.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 345666 9999999999999999999777667778899999999 99999998763
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.03 E-value=0.0022 Score=42.75 Aligned_cols=52 Identities=13% Similarity=0.305 Sum_probs=45.7
Q ss_pred eeeecCCCCCCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhC
Q psy3721 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELN 168 (207)
Q Consensus 116 ~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~ 168 (207)
.+++ ++|+.....||.++|+.||.|.--.+....|||.|.+ +.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 4556 9999999999999999999766666668899999999 99999999875
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.68 E-value=0.0086 Score=41.34 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=56.5
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe--cCEEEEEEcc-HhHHHHHHHhCCceeCC-eeEEEEecc
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDG-KPMKVQIST 183 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~--~~~afv~f~~-e~a~~A~~~l~g~~~~g-~~i~v~~~~ 183 (207)
....|.|-+.|... ...+-..|+.||.|.+.... .+.-.|+|.+ .+|++|+.. ||..+.| .-|.|....
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 35678888999886 45566778999999998885 5689999999 999999999 9999975 667777754
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.22 E-value=0.0081 Score=42.12 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=54.9
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEE-E---------------------ECCEEEEEeCChHHHHHHHHHhcC
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECD-V---------------------VKNYGFVHMENDEEGRTAIKELNG 91 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~-~---------------------~~~~~fV~f~~~~~a~~a~~~l~~ 91 (207)
..+.|.|-+.|+..+. .+.+.|++||.|.+-. . -.++.-|+|.++.+|.+|+ ..+|
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 3457778888766654 5567899999996621 0 1457799999999999999 5699
Q ss_pred CeeCCeeeEEEEcccC
Q psy3721 92 QIVNEKPLKIEAATSR 107 (207)
Q Consensus 92 ~~~~g~~i~v~~~~~~ 107 (207)
..+.|..|-|.+....
T Consensus 84 ~ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTKD 99 (132)
T ss_dssp CEETTEECEEEECCHH
T ss_pred eEeCcEEEEEEECCHH
Confidence 9999999999988654
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.02 E-value=0.0092 Score=39.65 Aligned_cols=61 Identities=11% Similarity=0.188 Sum_probs=50.2
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEEEecC----------EEEEEEcc-HhHHHHHHHhCCceeCC
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN----------YGFVHIDS-PDINKCIKELNGMMVDG 174 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~----------~afv~f~~-e~a~~A~~~l~g~~~~g 174 (207)
+-+|.|..||+++|++++.+.+...-.+.....+.| .|+|.|.+ ++...-....+|..+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 457999999999999999999987766555444422 69999999 99999999999999744
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.41 E-value=0.008 Score=51.26 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=40.6
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEEC---CEEEEEeCChHHHHHHHH
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK---NYGFVHMENDEEGRTAIK 87 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~---~~~fV~f~~~~~a~~a~~ 87 (207)
..++|+|. .|...++.+|.+.|+.||+|.++.+.+ -|+.|+|.+.+.+..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 35789997 799999999999999999999998883 389999999999986653
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.36 E-value=0.046 Score=38.29 Aligned_cols=69 Identities=17% Similarity=0.308 Sum_probs=52.2
Q ss_pred ceeeecCCCCCCChhHHHHhcccCCcEEE-EEE---------------------ecCEEEEEEcc-HhHHHHHHHhCCce
Q psy3721 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVE-CDI---------------------VRNYGFVHIDS-PDINKCIKELNGMM 171 (207)
Q Consensus 115 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~-~~~---------------------~~~~afv~f~~-e~a~~A~~~l~g~~ 171 (207)
..|.|-+.|...+...| +.|++||.|.+ +.. -.+-..|+|++ .+|.+|+.. ||+.
T Consensus 8 ~~VtVFGFp~~~~~~VI-~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMANQVI-AYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp CEEEEECCCGGGHHHHH-HHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred eEEEEEecCHHHHHHHH-HHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 35667778777666655 56799998766 211 13456899999 999999999 9999
Q ss_pred eCCeeEEEEeccCc
Q psy3721 172 VDGKPMKVQISTSR 185 (207)
Q Consensus 172 ~~g~~i~v~~~~~~ 185 (207)
+.|.-|-|...++.
T Consensus 86 i~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 86 FNGVLLGVIPYTKD 99 (132)
T ss_dssp ETTEECEEEECCHH
T ss_pred eCcEEEEEEECCHH
Confidence 99998888877643
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.93 E-value=0.027 Score=48.00 Aligned_cols=53 Identities=9% Similarity=0.154 Sum_probs=39.6
Q ss_pred CCceeeecCCCCCCChhHHHHhcccCCcEEEEEEe---cCEEEEEEcc-HhHHHHHHH
Q psy3721 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKE 166 (207)
Q Consensus 113 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~---~~~afv~f~~-e~a~~A~~~ 166 (207)
+.++|+|. .|..+++.+|.++|+.||.|.++.+- ..|+.|+|.+ ++++.++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 34789998 68899999999999999999999887 3389999999 777755433
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.54 E-value=0.23 Score=42.81 Aligned_cols=55 Identities=13% Similarity=0.197 Sum_probs=45.8
Q ss_pred cccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhc
Q psy3721 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELN 90 (207)
Q Consensus 35 ~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~ 90 (207)
...++|+ +|+.+...+|.++|+.||.+.=.++-...|||.|.+++.|..+++.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widdt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcCCeEEEEECCHHHHHHHHHHHH
Confidence 4566665 999999999999999999765444447799999999999999998874
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=90.52 E-value=0.97 Score=28.00 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=44.3
Q ss_pred CCChhHHHHhcccCC-----cEEEEEEecCEEEEEEccHhHHHHHHHhCCceeCCeeEEEEecc
Q psy3721 125 NTRAPEVRELFVPYG-----TVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQIST 183 (207)
Q Consensus 125 ~~t~~~l~~~f~~~g-----~i~~~~~~~~~afv~f~~e~a~~A~~~l~g~~~~g~~i~v~~~~ 183 (207)
.+...+|...+..-+ .|-.+++...+.||+-..+.+.+++..|++..+.|+.+++..++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECTTCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECHHHHHHHHHHhccccCcCceEEEEECC
Confidence 467777777775443 57889999999999999888999999999999999999987664
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.05 E-value=1.9 Score=37.06 Aligned_cols=56 Identities=13% Similarity=0.244 Sum_probs=46.3
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHhCCc
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGM 170 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l~g~ 170 (207)
...++++ +|......+|.+.|+.||.+.-..+-...|+|.|.+ +.|..++..++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widdt~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSSSEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcCCeEEEEECCHHHHHHHHHHHHhC
Confidence 4466666 899999999999999999765555668899999999 9999999988543
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=75.41 E-value=14 Score=23.87 Aligned_cols=57 Identities=25% Similarity=0.314 Sum_probs=49.1
Q ss_pred CcccEEEcCCCCCCCHHHHHHHhhcCCceEEEEEECCEEEEEeCChHHHHHHHHHhc
Q psy3721 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELN 90 (207)
Q Consensus 34 ~~~~l~V~~lp~~~t~~~l~~~f~~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~ 90 (207)
..|-+.|-|||.++-..++.-.....|--.-+....|.|.+.|.+.+.-..|++.|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyidgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSSCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecCeeEEEecCChHHHHHHHHHH
Confidence 457788999999999999888888888767788889999999999999999998654
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=73.00 E-value=13 Score=22.57 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=40.4
Q ss_pred CCHHHHHHHhhcCC-----ceEEEEEECCEEEEEeCChHHHHHHHHHhcCCeeCCeeeEEEEcc
Q psy3721 47 TSVELIRPLFEKYG-----KVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105 (207)
Q Consensus 47 ~t~~~l~~~f~~~g-----~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 105 (207)
+...+|..++..-+ .|-.+.+...|.||+..... |..+++.+.+..+.|+.+.+..+.
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 56666666665333 36788888999999987765 567889999999999999887653
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=62.61 E-value=28 Score=22.41 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=46.0
Q ss_pred CceeeecCCCCCCChhHHHHhcccCCcEEEEEEecCEEEEEEcc-HhHHHHHHHh
Q psy3721 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKEL 167 (207)
Q Consensus 114 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~~afv~f~~-e~a~~A~~~l 167 (207)
++-|-+-|+|..+...++.-.....|.--.|....|-|.++|.+ .+-.-|+..|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyidgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecCeeEEEecCChHHHHHHHHH
Confidence 45677889999999988888888888888999999999999999 7777777765
No 407
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=46.77 E-value=5.1 Score=28.43 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=21.5
Q ss_pred hHHHHhcccCCcEEEEEEecCEEEEEEc
Q psy3721 129 PEVRELFVPYGTVVECDIVRNYGFVHID 156 (207)
Q Consensus 129 ~~l~~~f~~~g~i~~~~~~~~~afv~f~ 156 (207)
+++.+++...|.|+.+...+||+||.-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETTTTEEEEEEE
T ss_pred CcccccccceeEEEEEECCCCeeEEeeC
Confidence 4566788888999999999999999975
No 408
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=45.49 E-value=3.6 Score=29.23 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=19.7
Q ss_pred HHHHHHhhcCCceEEEEEECCEEEEEeC
Q psy3721 50 ELIRPLFEKYGKVVECDVVKNYGFVHME 77 (207)
Q Consensus 50 ~~l~~~f~~~g~i~~i~~~~~~~fV~f~ 77 (207)
+|+.+++...|.|.-....+|||||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETTTTEEEEEEE
T ss_pred CcccccccceeEEEEEECCCCeeEEeeC
Confidence 4566778888888777777999999876
No 409
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.50 E-value=28 Score=20.96 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=15.4
Q ss_pred CcEEEEEEecCEEEEEEcc
Q psy3721 139 GTVVECDIVRNYGFVHIDS 157 (207)
Q Consensus 139 g~i~~~~~~~~~afv~f~~ 157 (207)
|.|..+...+..|+|.|.+
T Consensus 28 GtV~kV~~~~~~ClV~FeD 46 (68)
T 2e5p_A 28 GTIKKVDSAREVCLVQFED 46 (68)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred eEEEEEecCCcEEEEEEcc
Confidence 5677777778999999986
No 410
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=25.46 E-value=43 Score=21.76 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=21.3
Q ss_pred CCHHHHHHHhhcCCceEEEEEECCEEE
Q psy3721 47 TSVELIRPLFEKYGKVVECDVVKNYGF 73 (207)
Q Consensus 47 ~t~~~l~~~f~~~g~i~~i~~~~~~~f 73 (207)
.+++.+++.|+..|.|..-.+.-|||+
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MFGg~~l 30 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMFGGFGL 30 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEETTEEEE
T ss_pred hHHHHHHHHHhccCCceEeeccCcEEE
Confidence 466778999999999988777766654
No 411
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=25.36 E-value=36 Score=21.09 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=15.8
Q ss_pred CcEEEEEEecCEEEEEEcc
Q psy3721 139 GTVVECDIVRNYGFVHIDS 157 (207)
Q Consensus 139 g~i~~~~~~~~~afv~f~~ 157 (207)
|.|..+...++.|+|+|.+
T Consensus 45 GTI~kV~~~~e~ClV~F~D 63 (79)
T 2m0o_A 45 GTIKKVDSAREVCLVQFED 63 (79)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEeccCCCEEEEEEcC
Confidence 5777777778999999987
No 412
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.86 E-value=1.6e+02 Score=19.23 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=42.0
Q ss_pred cCCCCCCCHHHHHHHhh-cCCceEEEEEECCEEEEEeCChHHHHHHHHHhcCC
Q psy3721 41 GNVNPGTSVELIRPLFE-KYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92 (207)
Q Consensus 41 ~~lp~~~t~~~l~~~f~-~~g~i~~i~~~~~~~fV~f~~~~~a~~a~~~l~~~ 92 (207)
-.++..++-+||..-.. .||.-.++.....-..|-..+.++-++|++.|+..
T Consensus 22 i~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~EllIpl~sQeDLDkaIellDrs 74 (103)
T 2cu1_A 22 LQFPRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRS 74 (103)
T ss_dssp EEEESSCCHHHHHHHHHHHHSSCEEEEECSSSSCEECCSHHHHHHHHHHHHHC
T ss_pred EeccCCccHHHHHHHHHHHhCCeeeEEEecceEEEeccCHHHHHHHHHHHccC
Confidence 34567788888776544 68888888887888999999999999999988876
No 413
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=21.41 E-value=49 Score=19.90 Aligned_cols=19 Identities=21% Similarity=0.531 Sum_probs=14.6
Q ss_pred CcEEEEEEecCEEEEEEcc
Q psy3721 139 GTVVECDIVRNYGFVHIDS 157 (207)
Q Consensus 139 g~i~~~~~~~~~afv~f~~ 157 (207)
|.|..|.-.++.|+|+|.+
T Consensus 32 gtI~~V~~~~gtC~V~F~D 50 (66)
T 2eqj_A 32 GTIKKINILKQSCFIIFED 50 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred eEEEEEccCCcEEEEEEcc
Confidence 4566666668999999986
No 414
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=20.87 E-value=33 Score=15.44 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=9.0
Q ss_pred CchhhHhhhhhh
Q psy3721 1 MSRFDQQQLVKV 12 (207)
Q Consensus 1 ~~~~~~~~~~~~ 12 (207)
|.||+|...+..
T Consensus 3 mnrydqaatlra 14 (23)
T 3syn_E 3 MNRYDQAATLRA 14 (26)
T ss_pred cchHHHHHHHHH
Confidence 678888887754
Done!