AmiGO: BLAST Results


BLAST match view associations BLAST with lark lark lark	protein from Drosophila melanogaster	5.1e-58
BLAST match view associations BLAST with rbm4.1 rbm4.1 rbm4.1 RNA binding motif protein 4.1	gene_product from Danio rerio	2.9e-32
BLAST match view associations BLAST with zgc:77262 zgc:77262 zgc:77262	gene_product from Danio rerio	1.3e-29
BLAST match view associations BLAST with LOC100859076 LOC100859076 LOC100859076 Uncharacterized protein	protein from Gallus gallus	1.6e-29
BLAST match view associations BLAST with RBM4B RBM4B RBM4B Uncharacterized protein	protein from Bos taurus	2.1e-29
BLAST match view associations BLAST with RBM4B RBM4B RBM4B Uncharacterized protein	protein from Canis lupus familiaris	2.1e-29
BLAST match view associations BLAST with RBM4B RBM4B RBM4B RNA-binding protein 4B	protein from Homo sapiens	2.1e-29
BLAST match view associations BLAST with RBM4B RBM4B RBM4B RNA-binding protein 4B	protein from Sus scrofa	2.1e-29
BLAST match view associations BLAST with RBM4 RBM4 RBM4 RNA-binding protein 4	protein from Oryctolagus cuniculus	2.1e-29
BLAST match view associations BLAST with Rbm4b Rbm4b Rbm4b RNA binding motif protein 4B	protein from Mus musculus	2.1e-29
BLAST match view associations BLAST with Rbm4b Rbm4b Rbm4b RNA binding motif protein 4B	gene from Rattus norvegicus	2.1e-29
BLAST match view associations BLAST with Rbm4b Rbm4b Rbm4b RNA-binding protein 4B	protein from Rattus norvegicus	2.1e-29
BLAST match view associations BLAST with RBM4 RBM4 RBM4 RNA-binding protein 4	protein from Bos taurus	2.1e-29
BLAST match view associations BLAST with RBM4 RBM4 RBM4 Uncharacterized protein	protein from Canis lupus familiaris	2.1e-29
BLAST match view associations BLAST with RBM4 RBM4 RBM4 RNA-binding protein 4	protein from Homo sapiens	2.1e-29
BLAST match view associations BLAST with RBM4 RBM4 RBM4 RNA-binding protein 4	protein from Homo sapiens	2.1e-29
BLAST match view associations BLAST with RBM4 RBM4 RBM4 RNA-binding protein 4	protein from Macaca fascicularis	2.1e-29
BLAST match view associations BLAST with rbm4.2 rbm4.2 rbm4.2 RNA binding motif protein 4.2	gene_product from Danio rerio	3.4e-29
BLAST match view associations BLAST with RBM4B RBM4B RBM4B RNA-binding protein 4B	protein from Sus scrofa	1.1e-25
BLAST match view associations BLAST with RBM4 RBM4 RBM4 RNA-binding protein 4	protein from Homo sapiens	1.6e-24
BLAST match view associations BLAST with rbm14b rbm14b rbm14b RNA binding motif protein 14b	gene_product from Danio rerio	2.4e-24
BLAST match view associations BLAST with rbm4.3 rbm4.3 rbm4.3 RNA binding motif protein 4.3	gene_product from Danio rerio	3.3e-24
BLAST match view associations BLAST with RBM4B RBM4B RBM4B RNA-binding protein 4B	protein from Homo sapiens	8.7e-24
BLAST match view associations BLAST with RBM4B RBM4B RBM4B RNA-binding protein 4B	protein from Homo sapiens	1.4e-23
BLAST match view associations BLAST with Rbm4 Rbm4 Rbm4 RNA binding motif protein 4	gene from Rattus norvegicus	1.4e-23
BLAST match view associations BLAST with RBM4 RBM4 RBM4 RNA-binding protein 4	protein from Homo sapiens	2.3e-23
BLAST match view associations BLAST with RBM4 RBM4 RBM4 Uncharacterized protein	protein from Sus scrofa	1.0e-22
BLAST match view associations BLAST with RBM14 RBM14 RBM14 RNA-binding protein 14	protein from Homo sapiens	1.0e-22
BLAST match view associations BLAST with RBM14 RBM14 RBM14 Uncharacterized protein	protein from Canis lupus familiaris	1.3e-22
BLAST match view associations BLAST with RBM14 RBM14 RBM14 RNA-binding protein 14	protein from Bos taurus	1.6e-22
BLAST match view associations BLAST with RBM14 RBM14 RBM14 RNA-binding protein 14	protein from Bos taurus	1.6e-22
BLAST match view associations BLAST with Rbm14 Rbm14 Rbm14 RNA binding motif protein 14	protein from Mus musculus	7.3e-22
BLAST match view associations BLAST with rbm14a rbm14a rbm14a RNA binding motif protein 14a	gene_product from Danio rerio	1.9e-18
BLAST match view associations BLAST with rnp-1 rnp-1 rnp-1	gene from Caenorhabditis elegans	4.7e-16
BLAST match view associations BLAST with RBM14 RBM14 RBM14 RNA-binding protein 14	protein from Homo sapiens	1.6e-15
BLAST match view associations BLAST with RBM14 RBM14 RBM14 RNA-binding protein 14	protein from Homo sapiens	8.8e-15
BLAST match view associations BLAST with RBM14-RBM4 RBM14-RBM4 RBM14-RBM4 Protein RBM14-RBM4	protein from Homo sapiens	8.8e-15
BLAST match view associations BLAST with PAB1 PAB1 PAB1 Polyadenylate-binding protein, cytoplasmic and nuclear	protein from Magnaporthe oryzae 70-15	5.7e-14
BLAST match view associations BLAST with pabpc1-a pabpc1-a pabpc1-a Polyadenylate-binding protein 1-A	protein from Xenopus laevis	2.7e-13
BLAST match view associations BLAST with Rox8 Rox8 Rox8	protein from Drosophila melanogaster	3.3e-13
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Gallus gallus	5.6e-13
BLAST match view associations BLAST with pabpc1A pabpc1A pabpc1A polyadenylate binding protein (PABP)	gene from Dictyostelium discoideum	6.0e-13
BLAST match view associations BLAST with pabpc1l pabpc1l pabpc1l poly(A) binding protein, cytoplasmic 1-like	gene_product from Danio rerio	9.0e-13
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Canis lupus familiaris	9.2e-13
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Sus scrofa	9.2e-13
BLAST match view associations BLAST with pabpc4 pabpc4 pabpc4 poly(A) binding protein, cytoplasmic 4 (inducible form)	gene_product from Danio rerio	9.4e-13
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Canis lupus familiaris	1.1e-12
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Poly(A) binding protein, cytoplasmic 4 (Inducible form), isoform CRA_e	protein from Homo sapiens	1.1e-12
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	1.2e-12
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Bos taurus	1.2e-12
BLAST match view associations BLAST with RBP31 RBP31 RBP31 AT4G24770	protein from Arabidopsis thaliana	1.2e-12
BLAST match view associations BLAST with PAB8 PAB8 PAB8 AT1G49760	protein from Arabidopsis thaliana	1.3e-12
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Gallus gallus	1.7e-12
BLAST match view associations BLAST with epabp epabp epabp Embryonic polyadenylate-binding protein	protein from Xenopus (Silurana) tropicalis	1.9e-12
BLAST match view associations BLAST with Pabpc1 Pabpc1 Pabpc1 poly(A) binding protein, cytoplasmic 1	protein from Mus musculus	2.0e-12
BLAST match view associations BLAST with Pabpc1 Pabpc1 Pabpc1 poly(A) binding protein, cytoplasmic 1	gene from Rattus norvegicus	2.0e-12
BLAST match view associations BLAST with DAZAP1 DAZAP1 DAZAP1 DAZ-associated protein 1	protein from Homo sapiens	2.4e-12
BLAST match view associations BLAST with PAB2 PAB2 PAB2 AT4G34110	protein from Arabidopsis thaliana	2.5e-12
BLAST match view associations BLAST with pabpc1b pabpc1b pabpc1b poly A binding protein, cytoplasmic 1 b	gene_product from Danio rerio	2.5e-12
BLAST match view associations BLAST with Pabpc6 Pabpc6 Pabpc6 poly(A) binding protein, cytoplasmic 6	gene from Rattus norvegicus	2.6e-12
BLAST match view associations BLAST with epabp-a epabp-a epabp-a Embryonic polyadenylate-binding protein A	protein from Xenopus laevis	3.2e-12
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Homo sapiens	3.7e-12
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Canis lupus familiaris	3.7e-12
BLAST match view associations BLAST with pabpc1a pabpc1a pabpc1a poly A binding protein, cytoplasmic 1 a	gene_product from Danio rerio	4.1e-12
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Bos taurus	4.1e-12
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Canis lupus familiaris	4.1e-12
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Homo sapiens	4.1e-12
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Sus scrofa	4.1e-12
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Pongo abelii	4.1e-12
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Sus scrofa	4.2e-12
BLAST match view associations BLAST with Pabpc2 Pabpc2 Pabpc2 poly(A) binding protein, cytoplasmic 2	gene from Rattus norvegicus	5.2e-12
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	5.3e-12
BLAST match view associations BLAST with epabp-b epabp-b epabp-b Embryonic polyadenylate-binding protein B	protein from Xenopus laevis	6.7e-12
BLAST match view associations BLAST with pabpc1-b pabpc1-b pabpc1-b Polyadenylate-binding protein 1-B	protein from Xenopus laevis	6.7e-12
BLAST match view associations BLAST with CG4612 CG4612 CG4612	protein from Drosophila melanogaster	1.0e-11
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Sus scrofa	1.3e-11
BLAST match view associations BLAST with PAB7 PAB7 PAB7 AT2G36660	protein from Arabidopsis thaliana	1.3e-11
BLAST match view associations BLAST with CG7903 CG7903 CG7903	protein from Drosophila melanogaster	1.5e-11
BLAST match view associations BLAST with PABPC3 PABPC3 PABPC3 Polyadenylate-binding protein 3	protein from Homo sapiens	1.6e-11
BLAST match view associations BLAST with CP31B CP31B CP31B AT5G50250	protein from Arabidopsis thaliana	1.8e-11
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Gallus gallus	2.3e-11
BLAST match view associations BLAST with PABPC3 PABPC3 PABPC3 Polyadenylate-binding protein 3	protein from Homo sapiens	2.5e-11
BLAST match view associations BLAST with PAB4 PAB4 PAB4 AT2G23350	protein from Arabidopsis thaliana	2.5e-11
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Bos taurus	4.7e-11
BLAST match view associations BLAST with PABPC3 PABPC3 PABPC3 Polyadenylate-binding protein 3	protein from Homo sapiens	7.9e-11
BLAST match view associations BLAST with Pabpc4l Pabpc4l Pabpc4l poly(A) binding protein, cytoplasmic 4-like	gene from Rattus norvegicus	8.0e-11
BLAST match view associations BLAST with RS31 RS31 RS31 AT3G61860	protein from Arabidopsis thaliana	9.9e-11
BLAST match view associations BLAST with PFL1170w PFL1170w PFL1170w polyadenylate-binding protein, putative	gene from Plasmodium falciparum	9.9e-11
BLAST match view associations BLAST with PFL1170w PFL1170w PFL1170w Polyadenylate-binding protein, putative	protein from Plasmodium falciparum 3D7	9.9e-11
BLAST match view associations BLAST with orf19.3037 orf19.3037 orf19.3037	gene_product from Candida albicans	1.0e-10
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy3721
        (207 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0011640 - symbol:lark "lark" species:7227 "Drosoph...   596  5.1e-58   1
ZFIN|ZDB-GENE-030131-3902 - symbol:rbm4.1 "RNA binding mo...   353  2.9e-32   1
ZFIN|ZDB-GENE-040426-1811 - symbol:zgc:77262 "zgc:77262" ...   328  1.3e-29   1
UNIPROTKB|H9L1A3 - symbol:LOC100859076 "Uncharacterized p...   327  1.6e-29   1
UNIPROTKB|Q2KIV3 - symbol:RBM4B "Uncharacterized protein"...   326  2.1e-29   1
UNIPROTKB|E2RSD7 - symbol:RBM4B "Uncharacterized protein"...   326  2.1e-29   1
UNIPROTKB|Q9BQ04 - symbol:RBM4B "RNA-binding protein 4B" ...   326  2.1e-29   1
UNIPROTKB|Q06AT9 - symbol:RBM4B "RNA-binding protein 4B" ...   326  2.1e-29   1
UNIPROTKB|Q9BDY9 - symbol:RBM4 "RNA-binding protein 4" sp...   326  2.1e-29   1
MGI|MGI:1913954 - symbol:Rbm4b "RNA binding motif protein...   326  2.1e-29   1
RGD|1359343 - symbol:Rbm4b "RNA binding motif protein 4B"...   326  2.1e-29   1
UNIPROTKB|D4A1W5 - symbol:Rbm4 "Protein Rbm4" species:101...   326  2.1e-29   1
UNIPROTKB|Q64LC9 - symbol:Rbm4b "RNA-binding protein 4B" ...   326  2.1e-29   1
UNIPROTKB|Q3MHX3 - symbol:RBM4 "RNA-binding protein 4" sp...   326  2.1e-29   1
UNIPROTKB|E2RS70 - symbol:RBM4 "Uncharacterized protein" ...   326  2.1e-29   1
UNIPROTKB|E9PB51 - symbol:RBM4 "RNA-binding protein 4" sp...   326  2.1e-29   1
UNIPROTKB|Q9BWF3 - symbol:RBM4 "RNA-binding protein 4" sp...   326  2.1e-29   1
UNIPROTKB|Q4R979 - symbol:RBM4 "RNA-binding protein 4" sp...   326  2.1e-29   1
ZFIN|ZDB-GENE-030131-3019 - symbol:rbm4.2 "RNA binding mo...   324  3.4e-29   1
UNIPROTKB|F1RUT8 - symbol:RBM4B "RNA-binding protein 4B" ...   291  1.1e-25   1
UNIPROTKB|J3QRR5 - symbol:RBM4 "RNA-binding protein 4" sp...   280  1.6e-24   1
ZFIN|ZDB-GENE-040426-2455 - symbol:rbm14b "RNA binding mo...   285  2.4e-24   1
ZFIN|ZDB-GENE-040426-1938 - symbol:rbm4.3 "RNA binding mo...   277  3.3e-24   1
UNIPROTKB|E9PLB0 - symbol:RBM4B "RNA-binding protein 4B" ...   273  8.7e-24   1
UNIPROTKB|E9PM61 - symbol:RBM4B "RNA-binding protein 4B" ...   271  1.4e-23   1
RGD|1306891 - symbol:Rbm4 "RNA binding motif protein 4" s...   271  1.4e-23   1
UNIPROTKB|D6R9K7 - symbol:RBM4 "RNA-binding protein 4" sp...   269  2.3e-23   1
UNIPROTKB|F1RUT1 - symbol:RBM4 "Uncharacterized protein" ...   263  1.0e-22   1
UNIPROTKB|Q96PK6 - symbol:RBM14 "RNA-binding protein 14" ...   272  1.0e-22   1
UNIPROTKB|E2RS43 - symbol:RBM14 "Uncharacterized protein"...   271  1.3e-22   1
UNIPROTKB|F1MI47 - symbol:RBM14 "RNA-binding protein 14" ...   270  1.6e-22   1
UNIPROTKB|Q5EA36 - symbol:RBM14 "RNA-binding protein 14" ...   270  1.6e-22   1
MGI|MGI:1929092 - symbol:Rbm14 "RNA binding motif protein...   264  7.3e-22   1
UNIPROTKB|E9PTC9 - symbol:Rbm4 "Protein Rbm4" species:101...   243  1.1e-19   1
UNIPROTKB|E9PTZ4 - symbol:Rbm4 "Protein Rbm4" species:101...   243  1.3e-19   1
UNIPROTKB|B0LM41 - symbol:RBM14/RBM4 fusion "Transcriptio...   188  2.2e-19   2
ZFIN|ZDB-GENE-050522-496 - symbol:rbm14a "RNA binding mot...   229  1.9e-18   1
WB|WBGene00004384 - symbol:rnp-1 species:6239 "Caenorhabd...   200  4.7e-16   1
UNIPROTKB|F8WDX3 - symbol:RBM14 "RNA-binding protein 14" ...   195  1.6e-15   1
UNIPROTKB|B8ZZ74 - symbol:RBM14 "RNA-binding protein 14" ...   188  8.8e-15   1
UNIPROTKB|F2Z2W2 - symbol:RBM14-RBM4 "Protein RBM14-RBM4"...   188  8.8e-15   1
UNIPROTKB|Q2PYN1 - symbol:RBM14 "RNA-binding protein 14" ...   188  8.8e-15   1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro...   173  5.7e-14   2
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding...   184  2.7e-13   1
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species...   183  3.0e-13   1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph...   181  3.3e-13   1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species...   183  3.4e-13   1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a...   183  3.7e-13   1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein...   181  5.6e-13   1
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi...   180  6.0e-13   1
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi...   179  9.0e-13   1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein...   179  9.2e-13   1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein...   179  9.2e-13   1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin...   179  9.4e-13   1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein...   179  1.1e-12   1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p...   178  1.1e-12   1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p...   178  1.2e-12   1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein...   178  1.2e-12   1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370...   172  1.2e-12   1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling...   178  1.2e-12   1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702...   178  1.3e-12   1
UNIPROTKB|D4A1U6 - symbol:Rbm4 "Protein Rbm4" species:101...   176  1.6e-12   1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein...   176  1.7e-12   1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-...   176  1.9e-12   1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,...   176  2.0e-12   1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto...   176  2.0e-12   1
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ...   165  2.4e-12   1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702...   175  2.5e-12   1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p...   175  2.5e-12   1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt...   175  2.6e-12   1
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat...   174  3.2e-12   1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p...   173  3.7e-12   1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein...   173  3.7e-12   1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin...   173  4.1e-12   1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p...   173  4.1e-12   1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein...   173  4.1e-12   1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p...   173  4.1e-12   1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein...   173  4.1e-12   1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p...   173  4.1e-12   1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein...   173  4.2e-12   1
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt...   172  5.2e-12   1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p...   171  5.3e-12   1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat...   171  6.7e-12   1
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding...   171  6.7e-12   1
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m...   163  1.0e-11   1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei...   168  1.3e-11   1
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein...   168  1.3e-11   1
FB|FBgn0039730 - symbol:CG7903 species:7227 "Drosophila m...   164  1.5e-11   1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p...   158  1.6e-11   1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin...   160  1.8e-11   1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei...   166  2.3e-11   1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p...   161  2.5e-11   1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702...   166  2.5e-11   1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei...   163  4.7e-11   1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p...   161  7.9e-11   1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy...   157  8.0e-11   1
TAIR|locus:2079502 - symbol:RS31 "arginine/serine-rich sp...   152  9.9e-11   1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl...   162  9.9e-11   1
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding...   162  9.9e-11   1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ...   160  1.0e-10   1

WARNING:  Descriptions of 634 database sequences were not reported due to the
          limiting value of parameter V = 100.


>FB|FBgn0011640 [details] [associations]
            symbol:lark "lark" species:7227 "Drosophila melanogaster"
            [GO:0009790 "embryo development" evidence=IMP] [GO:0008062
            "eclosion rhythm" evidence=NAS;IMP;TAS] [GO:0007623 "circadian
            rhythm" evidence=NAS;IMP] [GO:0045804 "negative regulation of
            eclosion" evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0045475 "locomotor rhythm" evidence=IMP;TAS]
            [GO:0007562 "eclosion" evidence=TAS] [GO:0040011 "locomotion"
            evidence=TAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0048477 "oogenesis"
            evidence=IMP] [GO:0003723 "RNA binding" evidence=NAS] [GO:0007303
            "cytoplasmic transport, nurse cell to oocyte" evidence=IMP]
            [GO:0008104 "protein localization" evidence=IMP] [GO:0030036 "actin
            cytoskeleton organization" evidence=IMP] [GO:0007067 "mitosis"
            evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 GO:GO:0005737 GO:GO:0008104
            EMBL:AE014296 GO:GO:0007067 GO:GO:0000166 GO:GO:0046872
            GO:GO:0030036 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0009790 GO:GO:0007303 GO:GO:0045475 Gene3D:4.10.60.10
            GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0008062 EMBL:U59476
            EMBL:AY061458 RefSeq:NP_523957.1 RefSeq:NP_729237.1
            RefSeq:NP_729238.1 RefSeq:NP_729239.1 RefSeq:NP_729240.1
            UniGene:Dm.7078 ProteinModelPortal:Q94901 SMR:Q94901
            MINT:MINT-786921 STRING:Q94901 PaxDb:Q94901 PRIDE:Q94901
            EnsemblMetazoa:FBtr0076841 EnsemblMetazoa:FBtr0076842
            EnsemblMetazoa:FBtr0076843 EnsemblMetazoa:FBtr0076844
            EnsemblMetazoa:FBtr0076845 GeneID:38811 KEGG:dme:Dmel_CG8597
            UCSC:CG8597-RA CTD:38811 FlyBase:FBgn0011640 eggNOG:NOG294108
            GeneTree:ENSGT00390000020883 InParanoid:Q94901 KO:K13187
            OMA:GGHWSKE OrthoDB:EOG4DV42Z PhylomeDB:Q94901 GenomeRNAi:38811
            NextBio:810485 Bgee:Q94901 GermOnline:CG8597 GO:GO:0045804
            Uniprot:Q94901
        Length = 352

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 113/169 (66%), Positives = 136/169 (80%)

Query:    27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAI 86
             MPG    GTFK+FIGN++  T    +R LFEKYG VVECDVVKNYGFVHME +++GR AI
Sbjct:     1 MPG---AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAI 57

Query:    87 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
             + LNG  +NE  +K+EAA SR+ PNTPTTK+FVGNL+D TRAPEVRELF  YGTVVECDI
Sbjct:    58 QNLNGYTLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDI 117

Query:   147 VRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
             VRNYGFVH+D   D+   IKELNG +VDG+P+KVQ+STSRVR +PG+ +
Sbjct:   118 VRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGD 166

 Score = 190 (71.9 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 37/90 (41%), Positives = 57/90 (63%)

Query:   110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELN 168
             P   T K+F+GNL + T+A E+R LF  YGTVVECD+V+NYGFVH+++    +  I+ LN
Sbjct:     2 PGAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLN 61

Query:   169 GMMVDGKPMKVQISTSRVRQRPGVDEVVIG 198
             G  ++   +KV+ + SR        ++ +G
Sbjct:    62 GYTLNEFAIKVEAAKSRRAPNTPTTKIFVG 91


>ZFIN|ZDB-GENE-030131-3902 [details] [associations]
            symbol:rbm4.1 "RNA binding motif protein 4.1"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            ZFIN:ZDB-GENE-030131-3902 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
            eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
            EMBL:BC046057 EMBL:BC071513 IPI:IPI00501593 RefSeq:NP_955999.1
            UniGene:Dr.132298 ProteinModelPortal:Q6IQ97 SMR:Q6IQ97 PRIDE:Q6IQ97
            Ensembl:ENSDART00000052862 GeneID:573001 KEGG:dre:573001 CTD:573001
            HOGENOM:HOG000026790 HOVERGEN:HBG062217 InParanoid:Q6IQ97
            OMA:PYEERDP OrthoDB:EOG4NP74W NextBio:20891027 ArrayExpress:Q6IQ97
            Bgee:Q6IQ97 Uniprot:Q6IQ97
        Length = 419

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 71/159 (44%), Positives = 104/159 (65%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             KIF+GN++P T+ E IR LF +YGK+ ECD+VKN+GFVHM++  E   AI+ L+  ++N 
Sbjct:     3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +E +  +  P T +TK+ VGN+S +    E+R  F  YG VVECDIV++Y FVH++
Sbjct:    63 MAMNVEMSKGK--PKT-STKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHME 119

Query:   157 S-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
                D  + I  L+     GK M V++STSR+R  PG+ E
Sbjct:   120 RVEDAMEAISGLDNTAFQGKLMSVKLSTSRLRTAPGMGE 158


>ZFIN|ZDB-GENE-040426-1811 [details] [associations]
            symbol:zgc:77262 "zgc:77262" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-1811 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HSSP:P19339 HOVERGEN:HBG002295 eggNOG:NOG294108
            GeneTree:ENSGT00390000020883 EMBL:BX530031 EMBL:BC065633
            IPI:IPI00497767 RefSeq:NP_991217.1 UniGene:Dr.6046
            Ensembl:ENSDART00000065402 Ensembl:ENSDART00000145013 GeneID:402952
            KEGG:dre:402952 InParanoid:Q6P0G2 OMA:HMAKERE NextBio:20816762
            Uniprot:Q6P0G2
        Length = 331

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 67/149 (44%), Positives = 97/149 (65%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             KIF+GNV   T+ + +R LFEKYG V +CD++KNYGFVHM+ +E  + A+  L+   VN 
Sbjct:     3 KIFVGNVASATTEDELRALFEKYGAVSDCDILKNYGFVHMDEEEAAQKAVSALHKHEVNG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +E AT+ K  N   TK++VGN+ +   A +++ELF P+G VVECDIV+NY FVH+ 
Sbjct:    63 SRITVEYATT-KVRNA--TKIYVGNVPEGVAAAKIKELFQPFGKVVECDIVKNYAFVHMQ 119

Query:   157 SP-DINKCIKELNGMMVDGKPMKVQISTS 184
                +    I +LN   VDG+ + V +S S
Sbjct:   120 RENEALDAIAKLNHSKVDGQKIFVSLSRS 148

 Score = 173 (66.0 bits), Expect = 9.9e-13, P = 9.9e-13
 Identities = 35/75 (46%), Positives = 49/75 (65%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             KI++GNV  G +   I+ LF+ +GKVVECD+VKNY FVHM+ + E   AI +LN   V+ 
Sbjct:    79 KIYVGNVPEGVAAAKIKELFQPFGKVVECDIVKNYAFVHMQRENEALDAIAKLNHSKVDG 138

Query:    97 KPLKIEAATSRKGPN 111
             +  KI  + SR  P+
Sbjct:   139 Q--KIFVSLSRSNPS 151

 Score = 161 (61.7 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 31/73 (42%), Positives = 48/73 (65%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDI-NKCIKELNGMMVDG 174
             K+FVGN++  T   E+R LF  YG V +CDI++NYGFVH+D  +   K +  L+   V+G
Sbjct:     3 KIFVGNVASATTEDELRALFEKYGAVSDCDILKNYGFVHMDEEEAAQKAVSALHKHEVNG 62

Query:   175 KPMKVQISTSRVR 187
               + V+ +T++VR
Sbjct:    63 SRITVEYATTKVR 75


>UNIPROTKB|H9L1A3 [details] [associations]
            symbol:LOC100859076 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
            ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
            Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883 EMBL:AADN02074654
            Ensembl:ENSGALT00000029963 OMA:EAYNEQY Uniprot:H9L1A3
        Length = 306

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 67/159 (42%), Positives = 103/159 (64%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VCINVEAS---KNKSKASTKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
              + D  + I+ L+     GK M+VQ+STSR+R  PG+ +
Sbjct:   120 RAEDAVEAIRGLDNTEFQGKRMRVQLSTSRLRTAPGMGD 158

 Score = 163 (62.4 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 33/77 (42%), Positives = 52/77 (67%)

Query:    32 SVGTFKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELN 90
             S  + K+ +GN++P  T++EL R  FE+YG V+ECD+VK+Y FVHME  E+   AI+ L+
Sbjct:    74 SKASTKLHVGNISPTCTNLEL-RAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132

Query:    91 GQIVNEKPLKIEAATSR 107
                   K ++++ +TSR
Sbjct:   133 NTEFQGKRMRVQLSTSR 149


>UNIPROTKB|Q2KIV3 [details] [associations]
            symbol:RBM4B "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043153 "entrainment of circadian clock by photoperiod"
            evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
            evidence=IEA] [GO:0010628 "positive regulation of gene expression"
            evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
            GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
            KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
            CTD:83759 OMA:VYYNDAY EMBL:DAAA02063594 EMBL:BC112497
            IPI:IPI00711574 RefSeq:NP_001039393.1 UniGene:Bt.88781 SMR:Q2KIV3
            Ensembl:ENSBTAT00000007153 GeneID:505756 KEGG:bta:505756
            InParanoid:Q2KIV3 NextBio:20867298 Uniprot:Q2KIV3
        Length = 359

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 67/159 (42%), Positives = 102/159 (64%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
              + D  + I+ L+     GK M VQ+STSR+R  PG+ +
Sbjct:   120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158

 Score = 168 (64.2 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 34/93 (36%), Positives = 55/93 (59%)

Query:    15 YSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 74
             Y  + +NI+       S   T K+ +GN++P  + + +R  FE+YG V+ECD+VK+Y FV
Sbjct:    58 YKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFV 116

Query:    75 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
             HME  E+   AI+ L+      K + ++ +TSR
Sbjct:   117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149


>UNIPROTKB|E2RSD7 [details] [associations]
            symbol:RBM4B "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043153 "entrainment of circadian clock by
            photoperiod" evidence=IEA] [GO:0032922 "circadian regulation of
            gene expression" evidence=IEA] [GO:0010628 "positive regulation of
            gene expression" evidence=IEA] [GO:0006417 "regulation of
            translation" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0006417 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0032922 GO:GO:0010628
            Gene3D:4.10.60.10 GO:GO:0043153 GeneTree:ENSGT00390000020883
            KO:K13187 CTD:83759 OMA:VYYNDAY EMBL:AAEX03011624
            RefSeq:XP_533216.1 ProteinModelPortal:E2RSD7
            Ensembl:ENSCAFT00000019655 GeneID:476008 KEGG:cfa:476008
            NextBio:20851739 Uniprot:E2RSD7
        Length = 359

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 67/159 (42%), Positives = 102/159 (64%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
              + D  + I+ L+     GK M VQ+STSR+R  PG+ +
Sbjct:   120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158

 Score = 168 (64.2 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 34/93 (36%), Positives = 55/93 (59%)

Query:    15 YSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 74
             Y  + +NI+       S   T K+ +GN++P  + + +R  FE+YG V+ECD+VK+Y FV
Sbjct:    58 YKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFV 116

Query:    75 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
             HME  E+   AI+ L+      K + ++ +TSR
Sbjct:   117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149


>UNIPROTKB|Q9BQ04 [details] [associations]
            symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
            regulation of gene expression" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0006417 "regulation of translation"
            evidence=ISS] [GO:0007623 "circadian rhythm" evidence=ISS]
            [GO:0032922 "circadian regulation of gene expression" evidence=ISS]
            [GO:0043153 "entrainment of circadian clock by photoperiod"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
            GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 EMBL:CH471076 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
            GO:GO:0043153 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
            HOVERGEN:HBG062217 OrthoDB:EOG4NP74W EMBL:AK095158 EMBL:BC003503
            EMBL:BC004951 IPI:IPI00027838 RefSeq:NP_113680.1 UniGene:Hs.618713
            PDB:2DGT PDBsum:2DGT ProteinModelPortal:Q9BQ04 SMR:Q9BQ04
            IntAct:Q9BQ04 MINT:MINT-1379498 STRING:Q9BQ04 PhosphoSite:Q9BQ04
            DMDM:62511129 SWISS-2DPAGE:Q9BQ04 PaxDb:Q9BQ04 PeptideAtlas:Q9BQ04
            PRIDE:Q9BQ04 DNASU:83759 Ensembl:ENST00000310046
            Ensembl:ENST00000525754 GeneID:83759 KEGG:hsa:83759 UCSC:uc001oja.3
            CTD:83759 GeneCards:GC11M066432 HGNC:HGNC:28842 neXtProt:NX_Q9BQ04
            PharmGKB:PA134977404 InParanoid:Q9BQ04 OMA:VYYNDAY PhylomeDB:Q9BQ04
            ChiTaRS:RBM4B EvolutionaryTrace:Q9BQ04 GenomeRNAi:83759
            NextBio:72795 ArrayExpress:Q9BQ04 Bgee:Q9BQ04 CleanEx:HS_RBM4B
            Genevestigator:Q9BQ04 GermOnline:ENSG00000173914 Uniprot:Q9BQ04
        Length = 359

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 67/159 (42%), Positives = 102/159 (64%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
              + D  + I+ L+     GK M VQ+STSR+R  PG+ +
Sbjct:   120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158

 Score = 168 (64.2 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 34/93 (36%), Positives = 55/93 (59%)

Query:    15 YSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 74
             Y  + +NI+       S   T K+ +GN++P  + + +R  FE+YG V+ECD+VK+Y FV
Sbjct:    58 YKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFV 116

Query:    75 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
             HME  E+   AI+ L+      K + ++ +TSR
Sbjct:   117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149


>UNIPROTKB|Q06AT9 [details] [associations]
            symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
            scrofa" [GO:0007623 "circadian rhythm" evidence=ISS] [GO:0006417
            "regulation of translation" evidence=ISS] [GO:0043153 "entrainment
            of circadian clock by photoperiod" evidence=ISS] [GO:0032922
            "circadian regulation of gene expression" evidence=ISS] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0032922 Gene3D:4.10.60.10 GO:GO:0043153
            eggNOG:NOG294108 KO:K13187 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
            CTD:83759 EMBL:DQ917636 RefSeq:NP_001116660.1 UniGene:Ssc.53769
            ProteinModelPortal:Q06AT9 SMR:Q06AT9 GeneID:100144418
            KEGG:ssc:100144418 Uniprot:Q06AT9
        Length = 359

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 67/159 (42%), Positives = 102/159 (64%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
              + D  + I+ L+     GK M VQ+STSR+R  PG+ +
Sbjct:   120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158

 Score = 168 (64.2 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 34/93 (36%), Positives = 55/93 (59%)

Query:    15 YSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 74
             Y  + +NI+       S   T K+ +GN++P  + + +R  FE+YG V+ECD+VK+Y FV
Sbjct:    58 YKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFV 116

Query:    75 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
             HME  E+   AI+ L+      K + ++ +TSR
Sbjct:   117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149


>UNIPROTKB|Q9BDY9 [details] [associations]
            symbol:RBM4 "RNA-binding protein 4" species:9986
            "Oryctolagus cuniculus" [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=ISS] [GO:0002190
            "cap-independent translational initiation" evidence=ISS]
            [GO:0002192 "IRES-dependent translational initiation" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
            evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0017148
            "negative regulation of translation" evidence=ISS] [GO:0032055
            "negative regulation of translation in response to stress"
            evidence=ISS] [GO:0033554 "cellular response to stress"
            evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS] [GO:0035278
            "negative regulation of translation involved in gene silencing by
            miRNA" evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
            [GO:0043153 "entrainment of circadian clock by photoperiod"
            evidence=ISS] [GO:0045947 "negative regulation of translational
            initiation" evidence=ISS] [GO:0046822 "regulation of
            nucleocytoplasmic transport" evidence=ISS] [GO:0051149 "positive
            regulation of muscle cell differentiation" evidence=ISS]
            [GO:0051403 "stress-activated MAPK cascade" evidence=ISS]
            [GO:0097157 "pre-mRNA intronic binding" evidence=ISS] [GO:0097158
            "pre-mRNA intronic pyrimidine-rich binding" evidence=ISS]
            [GO:0097167 "circadian regulation of translation" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 GO:GO:0030154 GO:GO:0005730
            GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0045947
            GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0046822 GO:GO:0051149 GO:GO:0003730 GO:GO:0032922
            GO:GO:0010628 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
            GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 CTD:38811
            eggNOG:NOG294108 GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
            HOVERGEN:HBG062217 OrthoDB:EOG4NP74W OMA:VYYNDAY GO:GO:0097158
            GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:AF233063
            RefSeq:NP_001075548.1 UniGene:Ocu.2534 ProteinModelPortal:Q9BDY9
            SMR:Q9BDY9 PRIDE:Q9BDY9 Ensembl:ENSOCUT00000006692 GeneID:100008755
            Uniprot:Q9BDY9
        Length = 359

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 67/159 (42%), Positives = 102/159 (64%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
              + D  + I+ L+     GK M VQ+STSR+R  PG+ +
Sbjct:   120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158

 Score = 168 (64.2 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 34/93 (36%), Positives = 55/93 (59%)

Query:    15 YSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 74
             Y  + +NI+       S   T K+ +GN++P  + + +R  FE+YG V+ECD+VK+Y FV
Sbjct:    58 YKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFV 116

Query:    75 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
             HME  E+   AI+ L+      K + ++ +TSR
Sbjct:   117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149


>MGI|MGI:1913954 [details] [associations]
            symbol:Rbm4b "RNA binding motif protein 4B" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0006417 "regulation of translation"
            evidence=IDA] [GO:0007623 "circadian rhythm" evidence=IDA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0010628 "positive regulation of gene
            expression" evidence=IDA] [GO:0032922 "circadian regulation of gene
            expression" evidence=IDA] [GO:0043153 "entrainment of circadian
            clock by photoperiod" evidence=IDA] [GO:0046872 "metal ion binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 MGI:MGI:1913954
            GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
            GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
            KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
            CTD:83759 OMA:VYYNDAY EMBL:BC019488 IPI:IPI00177224
            RefSeq:NP_079993.2 UniGene:Mm.396734 ProteinModelPortal:Q8VE92
            SMR:Q8VE92 PhosphoSite:Q8VE92 PaxDb:Q8VE92 PRIDE:Q8VE92
            Ensembl:ENSMUST00000036744 GeneID:66704 KEGG:mmu:66704
            UCSC:uc008gar.1 InParanoid:Q8VE92 NextBio:322415 Bgee:Q8VE92
            CleanEx:MM_RBM4B Genevestigator:Q8VE92
            GermOnline:ENSMUSG00000033760 Uniprot:Q8VE92
        Length = 357

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 67/159 (42%), Positives = 102/159 (64%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
              + D  + I+ L+     GK M VQ+STSR+R  PG+ +
Sbjct:   120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158

 Score = 168 (64.2 bits), Expect = 4.5e-12, P = 4.5e-12
 Identities = 34/93 (36%), Positives = 55/93 (59%)

Query:    15 YSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 74
             Y  + +NI+       S   T K+ +GN++P  + + +R  FE+YG V+ECD+VK+Y FV
Sbjct:    58 YKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFV 116

Query:    75 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
             HME  E+   AI+ L+      K + ++ +TSR
Sbjct:   117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149


>RGD|1359343 [details] [associations]
            symbol:Rbm4b "RNA binding motif protein 4B" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0006417 "regulation
            of translation" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
            evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
            regulation of gene expression" evidence=IEA;ISO] [GO:0032922
            "circadian regulation of gene expression" evidence=ISO;ISS]
            [GO:0043153 "entrainment of circadian clock by photoperiod"
            evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1359343
            GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
            GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
            KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
            CTD:83759 OMA:VYYNDAY EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747
            RefSeq:NP_001007015.2 UniGene:Rn.203522 ProteinModelPortal:Q64LC9
            SMR:Q64LC9 IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
            GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
            NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
            Uniprot:Q64LC9
        Length = 357

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 67/159 (42%), Positives = 102/159 (64%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
              + D  + I+ L+     GK M VQ+STSR+R  PG+ +
Sbjct:   120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158

 Score = 168 (64.2 bits), Expect = 4.5e-12, P = 4.5e-12
 Identities = 34/93 (36%), Positives = 55/93 (59%)

Query:    15 YSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 74
             Y  + +NI+       S   T K+ +GN++P  + + +R  FE+YG V+ECD+VK+Y FV
Sbjct:    58 YKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFV 116

Query:    75 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
             HME  E+   AI+ L+      K + ++ +TSR
Sbjct:   117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149


>UNIPROTKB|D4A1W5 [details] [associations]
            symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
            ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1306891
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00371612
            ProteinModelPortal:D4A1W5 Ensembl:ENSRNOT00000026611
            ArrayExpress:D4A1W5 Uniprot:D4A1W5
        Length = 361

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 67/159 (42%), Positives = 102/159 (64%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
              + D  + I+ L+     GK M VQ+STSR+R  PG+ +
Sbjct:   120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158

 Score = 168 (64.2 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 34/93 (36%), Positives = 55/93 (59%)

Query:    15 YSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 74
             Y  + +NI+       S   T K+ +GN++P  + + +R  FE+YG V+ECD+VK+Y FV
Sbjct:    58 YKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFV 116

Query:    75 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
             HME  E+   AI+ L+      K + ++ +TSR
Sbjct:   117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149


>UNIPROTKB|Q64LC9 [details] [associations]
            symbol:Rbm4b "RNA-binding protein 4B" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 RGD:1359343 GO:GO:0006417 GO:GO:0005730
            GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0032922
            GO:GO:0010628 Gene3D:4.10.60.10 GO:GO:0043153 eggNOG:NOG294108
            GeneTree:ENSGT00390000020883 KO:K13187 HOGENOM:HOG000026790
            HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:83759 OMA:VYYNDAY
            EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747 RefSeq:NP_001007015.2
            UniGene:Rn.203522 ProteinModelPortal:Q64LC9 SMR:Q64LC9
            IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
            GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
            NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
            Uniprot:Q64LC9
        Length = 357

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 67/159 (42%), Positives = 102/159 (64%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
              + D  + I+ L+     GK M VQ+STSR+R  PG+ +
Sbjct:   120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158

 Score = 168 (64.2 bits), Expect = 4.5e-12, P = 4.5e-12
 Identities = 34/93 (36%), Positives = 55/93 (59%)

Query:    15 YSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 74
             Y  + +NI+       S   T K+ +GN++P  + + +R  FE+YG V+ECD+VK+Y FV
Sbjct:    58 YKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFV 116

Query:    75 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
             HME  E+   AI+ L+      K + ++ +TSR
Sbjct:   117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149


>UNIPROTKB|Q3MHX3 [details] [associations]
            symbol:RBM4 "RNA-binding protein 4" species:9913 "Bos
            taurus" [GO:0097167 "circadian regulation of translation"
            evidence=ISS] [GO:0002192 "IRES-dependent translational initiation"
            evidence=ISS] [GO:0002190 "cap-independent translational
            initiation" evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0046822
            "regulation of nucleocytoplasmic transport" evidence=ISS]
            [GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0016607
            "nuclear speck" evidence=ISS] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
            [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
            [GO:0043153 "entrainment of circadian clock by photoperiod"
            evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=ISS]
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0051403 "stress-activated MAPK cascade"
            evidence=ISS] [GO:0051149 "positive regulation of muscle cell
            differentiation" evidence=ISS] [GO:0045947 "negative regulation of
            translational initiation" evidence=ISS] [GO:0035278 "negative
            regulation of translation involved in gene silencing by miRNA"
            evidence=ISS] [GO:0033554 "cellular response to stress"
            evidence=ISS] [GO:0032055 "negative regulation of translation in
            response to stress" evidence=ISS] [GO:0017148 "negative regulation
            of translation" evidence=ISS] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0030154 "cell differentiation" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0030154 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
            GO:GO:0046872 GO:GO:0045947 GO:GO:0016607 GO:GO:0008270
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149
            GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
            GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381
            eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
            HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
            EMBL:BT030489 EMBL:BC104570 IPI:IPI00689636 RefSeq:NP_001070478.1
            UniGene:Bt.20177 ProteinModelPortal:Q3MHX3 SMR:Q3MHX3
            Ensembl:ENSBTAT00000000541 GeneID:767937 KEGG:bta:767937 CTD:5936
            InParanoid:Q3MHX3 OMA:IPTIDTC NextBio:20918294 GO:GO:0097158
            GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 Uniprot:Q3MHX3
        Length = 362

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 67/159 (42%), Positives = 102/159 (64%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
              + D  + I+ L+     GK M VQ+STSR+R  PG+ +
Sbjct:   120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158


>UNIPROTKB|E2RS70 [details] [associations]
            symbol:RBM4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
            KO:K13187 CTD:5936 OMA:IPTIDTC EMBL:AAEX03011624 RefSeq:XP_852303.1
            ProteinModelPortal:E2RS70 Ensembl:ENSCAFT00000019680 GeneID:610648
            KEGG:cfa:610648 NextBio:20896200 Uniprot:E2RS70
        Length = 365

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 67/159 (42%), Positives = 102/159 (64%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
              + D  + I+ L+     GK M VQ+STSR+R  PG+ +
Sbjct:   120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158


>UNIPROTKB|E9PB51 [details] [associations]
            symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
            HGNC:HGNC:9901 ChiTaRS:RBM4 IPI:IPI00974578
            ProteinModelPortal:E9PB51 SMR:E9PB51 Ensembl:ENST00000510173
            ArrayExpress:E9PB51 Bgee:E9PB51 Uniprot:E9PB51
        Length = 240

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 67/159 (42%), Positives = 102/159 (64%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
              + D  + I+ L+     GK M VQ+STSR+R  PG+ +
Sbjct:   120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158


>UNIPROTKB|Q9BWF3 [details] [associations]
            symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0051149 "positive regulation of muscle cell
            differentiation" evidence=IDA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0003729 "mRNA binding" evidence=IDA] [GO:0046822 "regulation of
            nucleocytoplasmic transport" evidence=IDA] [GO:0005654
            "nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0043153 "entrainment of circadian clock by
            photoperiod" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
            [GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0032055
            "negative regulation of translation in response to stress"
            evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IDA] [GO:0033554 "cellular response to stress"
            evidence=IDA] [GO:0051403 "stress-activated MAPK cascade"
            evidence=IDA] [GO:0017148 "negative regulation of translation"
            evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0045947
            "negative regulation of translational initiation" evidence=IDA]
            [GO:0035198 "miRNA binding" evidence=IDA] [GO:0035278 "negative
            regulation of translation involved in gene silencing by miRNA"
            evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0002192 "IRES-dependent translational initiation" evidence=IDA]
            [GO:0002190 "cap-independent translational initiation"
            evidence=IDA] [GO:0097167 "circadian regulation of translation"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
            GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
            GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0006396 GO:GO:0051149
            GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
            GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 EMBL:AP001157
            GO:GO:0000381 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
            HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:5936 OMA:IPTIDTC
            GO:GO:0097158 GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:U89505
            EMBL:AK097592 EMBL:AK303984 EMBL:AL832566 EMBL:BC000307
            EMBL:BC021120 EMBL:BC032735 EMBL:BC064960 IPI:IPI00003704
            IPI:IPI00556034 IPI:IPI00908491 IPI:IPI00940890
            RefSeq:NP_001185772.1 RefSeq:NP_001185773.1 RefSeq:NP_002887.2
            UniGene:Hs.523822 UniGene:Hs.728823 PDB:2DNQ PDBsum:2DNQ
            ProteinModelPortal:Q9BWF3 SMR:Q9BWF3 DIP:DIP-44199N IntAct:Q9BWF3
            MINT:MINT-1187795 STRING:Q9BWF3 PhosphoSite:Q9BWF3 DMDM:62511089
            PaxDb:Q9BWF3 PRIDE:Q9BWF3 DNASU:5936 Ensembl:ENST00000310092
            Ensembl:ENST00000396053 Ensembl:ENST00000398692
            Ensembl:ENST00000408993 Ensembl:ENST00000409406
            Ensembl:ENST00000483858 Ensembl:ENST00000530235
            Ensembl:ENST00000532968 GeneID:5936 KEGG:hsa:5936 UCSC:uc001oiv.3
            UCSC:uc001oiw.2 UCSC:uc001oix.2 GeneCards:GC11P066406
            HGNC:HGNC:9901 MIM:602571 neXtProt:NX_Q9BWF3 PharmGKB:PA34266
            ChiTaRS:RBM4 EvolutionaryTrace:Q9BWF3 GenomeRNAi:5936 NextBio:23140
            ArrayExpress:Q9BWF3 Bgee:Q9BWF3 CleanEx:HS_RBM4
            Genevestigator:Q9BWF3 GermOnline:ENSG00000173933 Uniprot:Q9BWF3
        Length = 364

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 67/159 (42%), Positives = 102/159 (64%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
              + D  + I+ L+     GK M VQ+STSR+R  PG+ +
Sbjct:   120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158


>UNIPROTKB|Q4R979 [details] [associations]
            symbol:RBM4 "RNA-binding protein 4" species:9541 "Macaca
            fascicularis" [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0002190 "cap-independent
            translational initiation" evidence=ISS] [GO:0002192 "IRES-dependent
            translational initiation" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003730
            "mRNA 3'-UTR binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
            "nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016607
            "nuclear speck" evidence=ISS] [GO:0017148 "negative regulation of
            translation" evidence=ISS] [GO:0032055 "negative regulation of
            translation in response to stress" evidence=ISS] [GO:0033554
            "cellular response to stress" evidence=ISS] [GO:0035198 "miRNA
            binding" evidence=ISS] [GO:0035278 "negative regulation of
            translation involved in gene silencing by miRNA" evidence=ISS]
            [GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0043153
            "entrainment of circadian clock by photoperiod" evidence=ISS]
            [GO:0045947 "negative regulation of translational initiation"
            evidence=ISS] [GO:0046822 "regulation of nucleocytoplasmic
            transport" evidence=ISS] [GO:0051149 "positive regulation of muscle
            cell differentiation" evidence=ISS] [GO:0051403 "stress-activated
            MAPK cascade" evidence=ISS] [GO:0097157 "pre-mRNA intronic binding"
            evidence=ISS] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
            binding" evidence=ISS] [GO:0097167 "circadian regulation of
            translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
            GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
            GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149 GO:GO:0003730
            GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10 GO:GO:0051403
            GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 HSSP:Q99K48
            HOVERGEN:HBG062217 GO:GO:0097158 GO:GO:0097167 GO:GO:0002192
            GO:GO:0032055 EMBL:AB168217 ProteinModelPortal:Q4R979 SMR:Q4R979
            PRIDE:Q4R979 Uniprot:Q4R979
        Length = 364

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 67/159 (42%), Positives = 102/159 (64%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
              + D  + I+ L+     GK M VQ+STSR+R  PG+ +
Sbjct:   120 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGD 158


>ZFIN|ZDB-GENE-030131-3019 [details] [associations]
            symbol:rbm4.2 "RNA binding motif protein 4.2"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            ZFIN:ZDB-GENE-030131-3019 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339
            HOGENOM:HOG000026790 HOVERGEN:HBG062217 EMBL:BC044503 EMBL:BC153457
            IPI:IPI00493444 RefSeq:NP_955971.1 UniGene:Dr.123162 SMR:Q803F7
            STRING:Q803F7 GeneID:557528 KEGG:dre:557528 CTD:557528
            InParanoid:Q803F7 NextBio:20882029 Uniprot:Q803F7
        Length = 385

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 67/159 (42%), Positives = 101/159 (63%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             KIFIGN++P ++ + +R LF ++G V ECDV+KNYGFVHM++ +E   AI++L+   +  
Sbjct:     3 KIFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFVHMDSKKEAEAAIRKLHHYELKG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
             + + +E +   KG    +TK+ V N+S      E+R  F  YG VVECDIV++Y FVH++
Sbjct:    63 QAINVELS---KGKPRGSTKLHVSNISSGCTNQELRAKFEEYGPVVECDIVKDYAFVHME 119

Query:   157 S-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
                D  + I  L      GK +KVQ+STSR+R  PG+ +
Sbjct:   120 RMDDAMEAISGLENTTFQGKLIKVQLSTSRLRTAPGMGD 158

 Score = 161 (61.7 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query:    34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQI 93
             G+ K+ + N++ G + + +R  FE+YG VVECD+VK+Y FVHME  ++   AI  L    
Sbjct:    76 GSTKLHVSNISSGCTNQELRAKFEEYGPVVECDIVKDYAFVHMERMDDAMEAISGLENTT 135

Query:    94 VNEKPLKIEAATSR 107
                K +K++ +TSR
Sbjct:   136 FQGKLIKVQLSTSR 149


>UNIPROTKB|F1RUT8 [details] [associations]
            symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
            scrofa" [GO:0043153 "entrainment of circadian clock by photoperiod"
            evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
            evidence=IEA] [GO:0010628 "positive regulation of gene expression"
            evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
            GO:GO:0043153 GeneTree:ENSGT00390000020883 OMA:VYYNDAY
            Ensembl:ENSSSCT00000014136 Uniprot:F1RUT8
        Length = 359

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 61/160 (38%), Positives = 98/160 (61%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG ++ C + ++Y F+H++
Sbjct:    63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEAYGGLLRCFLKKDYIFIHLE 119

Query:   157 SPDINKCIKE--LNGMMVDGKPMKVQISTSRVRQRPGVDE 194
                   C++   L+G    GK M VQ+STSR+R  PG+ +
Sbjct:   120 REQ-PACLRVPGLDGTQAQGKRMHVQLSTSRLRTAPGMGD 158

 Score = 126 (49.4 bits), Expect = 6.7e-06, P = 6.7e-06
 Identities = 26/93 (27%), Positives = 50/93 (53%)

Query:    15 YSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 74
             Y  + +NI+       S   T K+ +GN++P  + + +R  FE YG ++ C + K+Y F+
Sbjct:    58 YKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEAYGGLLRCFLKKDYIFI 116

Query:    75 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 107
             H+E ++     +  L+G     K + ++ +TSR
Sbjct:   117 HLEREQPACLRVPGLDGTQAQGKRMHVQLSTSR 149


>UNIPROTKB|J3QRR5 [details] [associations]
            symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
            HGNC:HGNC:9901 ChiTaRS:RBM4 ProteinModelPortal:J3QRR5
            Ensembl:ENST00000578778 Uniprot:J3QRR5
        Length = 155

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 60/157 (38%), Positives = 95/157 (60%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 SPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVD 193
               +    ++ + G+  D    +V+    RV Q  G+D
Sbjct:   120 RAE--DAVEAIRGL--DNTEFQVETGFHRVNQ-DGLD 151


>ZFIN|ZDB-GENE-040426-2455 [details] [associations]
            symbol:rbm14b "RNA binding motif protein 14b"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            ZFIN:ZDB-GENE-040426-2455 GO:GO:0000166 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF57756 HSSP:P19339
            KO:K13189 HOVERGEN:HBG062132 EMBL:BC056604 EMBL:BC068361
            IPI:IPI00492284 RefSeq:NP_997973.1 UniGene:Dr.132507 GeneID:402858
            KEGG:dre:402858 CTD:402858 InParanoid:Q6NV05 NextBio:20816684
            Uniprot:Q6NV05
        Length = 556

 Score = 285 (105.4 bits), Expect = 2.4e-24, P = 2.4e-24
 Identities = 58/149 (38%), Positives = 93/149 (62%)

Query:    35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
             T K+F+GN+   T+ E +  +FE YG+VV C V++ + FVH++ +     AI+ELNG+  
Sbjct:     6 TVKLFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF 65

Query:    95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
               + L +E +  R  P   +TKVFVGNLS      +++ELF  +G V+ECD V+ Y FVH
Sbjct:    66 KGRNLVVEESRGR--P-LHSTKVFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVH 122

Query:   155 IDSP-DINKCIKELNGMMVDGKPMKVQIS 182
             +++  D  + I+ L+G    G+P+ V++S
Sbjct:   123 MENKEDALQAIEALHGTSFKGRPLSVELS 151

 Score = 184 (69.8 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 34/81 (41%), Positives = 52/81 (64%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+F+GN++   + E ++ LF+ +GKV+ECD VK Y FVHMEN E+   AI+ L+G     
Sbjct:    84 KVFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKG 143

Query:    97 KPLKIEAATSRKGPNTPTTKV 117
             +PL +E +  +    TPT K+
Sbjct:   144 RPLSVELSKVQPSKQTPTGKI 164

 Score = 136 (52.9 bits), Expect = 7.0e-07, P = 7.0e-07
 Identities = 28/73 (38%), Positives = 42/73 (57%)

Query:   114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDI-NKCIKELNGMMV 172
             T K+FVGNL+ +T   E+  +F  YG VV C ++R + FVH+       + I+ELNG   
Sbjct:     6 TVKLFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF 65

Query:   173 DGKPMKVQISTSR 185
              G+ + V+ S  R
Sbjct:    66 KGRNLVVEESRGR 78


>ZFIN|ZDB-GENE-040426-1938 [details] [associations]
            symbol:rbm4.3 "RNA binding motif protein 4.3"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016772
            "transferase activity, transferring phosphorus-containing groups"
            evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
            [GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1938
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
            HOVERGEN:HBG062217 EMBL:AL928799 EMBL:BC067153 IPI:IPI00493442
            RefSeq:NP_998482.1 UniGene:Dr.5277 SMR:Q6NXC1 STRING:Q6NXC1
            Ensembl:ENSDART00000037817 Ensembl:ENSDART00000135207 GeneID:406277
            KEGG:dre:406277 CTD:406277 InParanoid:Q6NXC1 OMA:RPYDAER
            OrthoDB:EOG4J9N12 NextBio:20817910 Uniprot:Q6NXC1
        Length = 341

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 61/152 (40%), Positives = 90/152 (59%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             KIFIGN+     V+ ++ LF +YG V EC ++KN+ FVHM++ +    AIK L+   ++ 
Sbjct:     3 KIFIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHLYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
              P+ +EA+   +G N    K+ V N+   T   E+R LF  YGTV EC I++N+ FVH++
Sbjct:    63 TPINVEAS---RGKNQGPVKLHVANVEKGTD-DELRALFEDYGTVAECAIIKNFAFVHMN 118

Query:   157 SPD-INKCIKELNGMMVDGKPMKVQISTSRVR 187
             + D     IK L+     GK + VQIS SR R
Sbjct:   119 NSDEAMDAIKGLDNTEFQGKRIHVQISKSRPR 150

 Score = 156 (60.0 bits), Expect = 8.4e-11, P = 8.4e-11
 Identities = 32/74 (43%), Positives = 43/74 (58%)

Query:    34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQI 93
             G  K+ + NV  GT  EL R LFE YG V EC ++KN+ FVHM N +E   AIK L+   
Sbjct:    76 GPVKLHVANVEKGTDDEL-RALFEDYGTVAECAIIKNFAFVHMNNSDEAMDAIKGLDNTE 134

Query:    94 VNEKPLKIEAATSR 107
                K + ++ + SR
Sbjct:   135 FQGKRIHVQISKSR 148


>UNIPROTKB|E9PLB0 [details] [associations]
            symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
            HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00979194
            ProteinModelPortal:E9PLB0 SMR:E9PLB0 Ensembl:ENST00000531969
            ArrayExpress:E9PLB0 Bgee:E9PLB0 Uniprot:E9PLB0
        Length = 143

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 56/140 (40%), Positives = 88/140 (62%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELNGMMVDGK 175
              + D  + I+ L+     G+
Sbjct:   120 RAEDAVEAIRGLDNTEFQGR 139

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query:    15 YSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 74
             Y  + +NI+       S   T K+ +GN++P  + + +R  FE+YG V+ECD+VK+Y FV
Sbjct:    58 YKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFV 116

Query:    75 HMENDEEGRTAIKELN 90
             HME  E+   AI+ L+
Sbjct:   117 HMERAEDAVEAIRGLD 132


>UNIPROTKB|E9PM61 [details] [associations]
            symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
            HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00977800
            ProteinModelPortal:E9PM61 SMR:E9PM61 Ensembl:ENST00000524637
            ArrayExpress:E9PM61 Bgee:E9PM61 Uniprot:E9PM61
        Length = 147

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 56/139 (40%), Positives = 87/139 (62%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELNGMMVDG 174
              + D  + I+ L+     G
Sbjct:   120 RAEDAVEAIRGLDNTEFQG 138

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query:    15 YSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 74
             Y  + +NI+       S   T K+ +GN++P  + + +R  FE+YG V+ECD+VK+Y FV
Sbjct:    58 YKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFV 116

Query:    75 HMENDEEGRTAIKELN 90
             HME  E+   AI+ L+
Sbjct:   117 HMERAEDAVEAIRGLD 132


>RGD|1306891 [details] [associations]
            symbol:Rbm4 "RNA binding motif protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0002190 "cap-independent
            translational initiation" evidence=ISO] [GO:0002192 "IRES-dependent
            translational initiation" evidence=ISO] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
            [GO:0003729 "mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494
            "cytoplasmic stress granule" evidence=ISO] [GO:0016607 "nuclear
            speck" evidence=ISO] [GO:0017148 "negative regulation of
            translation" evidence=ISO] [GO:0032055 "negative regulation of
            translation in response to stress" evidence=ISO] [GO:0032922
            "circadian regulation of gene expression" evidence=ISO] [GO:0033554
            "cellular response to stress" evidence=ISO] [GO:0035198 "miRNA
            binding" evidence=ISO] [GO:0035278 "negative regulation of
            translation involved in gene silencing by miRNA" evidence=ISO]
            [GO:0045727 "positive regulation of translation" evidence=ISO]
            [GO:0045947 "negative regulation of translational initiation"
            evidence=ISO] [GO:0046822 "regulation of nucleocytoplasmic
            transport" evidence=ISO] [GO:0051149 "positive regulation of muscle
            cell differentiation" evidence=ISO] [GO:0051403 "stress-activated
            MAPK cascade" evidence=ISO] [GO:0097157 "pre-mRNA intronic binding"
            evidence=ISO] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
            binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1306891 RGD:1359343
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
            EMBL:CH473953 UniGene:Rn.203522 HOGENOM:HOG000089965 EMBL:BC086338
            IPI:IPI00950131 SMR:Q5U212 STRING:Q5U212 Ensembl:ENSRNOT00000067093
            InParanoid:Q5U212 Genevestigator:Q5U212 Uniprot:Q5U212
        Length = 143

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 56/139 (40%), Positives = 87/139 (62%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELNGMMVDG 174
              + D  + I+ L+     G
Sbjct:   120 RAEDAVEAIRGLDNTEFQG 138

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query:    15 YSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 74
             Y  + +NI+       S   T K+ +GN++P  + + +R  FE+YG V+ECD+VK+Y FV
Sbjct:    58 YKLHGVNINVEASKNKSKAST-KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFV 116

Query:    75 HMENDEEGRTAIKELN 90
             HME  E+   AI+ L+
Sbjct:   117 HMERAEDAVEAIRGLD 132


>UNIPROTKB|D6R9K7 [details] [associations]
            symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
            HGNC:HGNC:9901 ChiTaRS:RBM4 HOGENOM:HOG000089965 IPI:IPI00965408
            ProteinModelPortal:D6R9K7 SMR:D6R9K7 Ensembl:ENST00000506523
            ArrayExpress:D6R9K7 Bgee:D6R9K7 Uniprot:D6R9K7
        Length = 150

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 55/133 (41%), Positives = 86/133 (64%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S      E+R  F  YG V+ECDIV++Y FVH++
Sbjct:    63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHME 119

Query:   157 -SPDINKCIKELN 168
              + D  + I+ L+
Sbjct:   120 RAEDAVEAIRGLD 132


>UNIPROTKB|F1RUT1 [details] [associations]
            symbol:RBM4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
            Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
            Ensembl:ENSSSCT00000014143 OMA:NTAMANH Uniprot:F1RUT1
        Length = 356

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 58/159 (36%), Positives = 92/159 (57%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+FIGN+    + + IR LFE+YGKV+ECD++KNYGFVH+E+      AI+ L+   ++ 
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 156
               + +EA+   K  +  +TK+ VGN+S       +R  F+ YG     DI +++ FVH  
Sbjct:    63 VNINVEAS---KNKSKTSTKLHVGNISPTCTNKSLRSKFLCYGRAFILDIFKDFFFVHQQ 119

Query:   157 SPDINKCIKELNGMMV-DGKPMKVQISTSRVRQRPGVDE 194
                       ++ + +  GK M VQ+STSR+R  PG+ +
Sbjct:   120 KKKKKVHALRISDLTIFKGKRMHVQLSTSRLRTAPGMGD 158


>UNIPROTKB|Q96PK6 [details] [associations]
            symbol:RBM14 "RNA-binding protein 14" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030374
            "ligand-dependent nuclear receptor transcription coactivator
            activity" evidence=IPI] [GO:0016592 "mediator complex"
            evidence=NAS] [GO:0001104 "RNA polymerase II transcription cofactor
            activity" evidence=NAS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0016575 "histone deacetylation" evidence=IPI] [GO:0009725
            "response to hormone stimulus" evidence=TAS] [GO:0030529
            "ribonucleoprotein complex" evidence=TAS] [GO:0030520
            "intracellular estrogen receptor signaling pathway" evidence=NAS]
            [GO:0042921 "glucocorticoid receptor signaling pathway"
            evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0006310
            "DNA recombination" evidence=NAS] [GO:0006281 "DNA repair"
            evidence=NAS] [GO:0006260 "DNA replication" evidence=NAS]
            [GO:0030674 "protein binding, bridging" evidence=NAS] [GO:0005667
            "transcription factor complex" evidence=IPI] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0042921 GO:GO:0000166 GO:GO:0006260 GO:GO:0006281
            EMBL:CH471076 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0030674
            GO:GO:0003723 GO:GO:0005667 GO:GO:0006310 GO:GO:0009725
            GO:GO:0030529 GO:GO:0030520 GO:GO:0030374 GO:GO:0016575
            eggNOG:COG0724 EMBL:AP001157 GO:GO:0016592 GO:GO:0001104 CTD:10432
            HOGENOM:HOG000065673 HOVERGEN:HBG053180 KO:K13189 OrthoDB:EOG45X7XS
            EMBL:AF315632 EMBL:AF315633 EMBL:AF080561 EMBL:AK021768
            EMBL:AK222830 EMBL:BC000488 EMBL:BE885635 EMBL:CR749306
            IPI:IPI00013174 IPI:IPI00644837 IPI:IPI01009009
            RefSeq:NP_001185765.1 RefSeq:NP_001185775.1 RefSeq:NP_006319.1
            UniGene:Hs.533712 PDB:2DNP PDBsum:2DNP ProteinModelPortal:Q96PK6
            SMR:Q96PK6 IntAct:Q96PK6 MINT:MINT-2798129 STRING:Q96PK6
            PhosphoSite:Q96PK6 DMDM:73913750 PaxDb:Q96PK6 PRIDE:Q96PK6
            DNASU:10432 Ensembl:ENST00000310137 Ensembl:ENST00000393979
            Ensembl:ENST00000500635 GeneID:100526737 GeneID:10432
            KEGG:hsa:10432 UCSC:uc001oit.3 UCSC:uc009yri.3 CTD:100526737
            GeneCards:GC11P066384 HGNC:HGNC:14219 HPA:HPA006628 MIM:612409
            neXtProt:NX_Q96PK6 PharmGKB:PA34263 InParanoid:Q96PK6 OMA:SLTSYGA
            PhylomeDB:Q96PK6 ChiTaRS:RBM14 ChiTaRS:RBM14-RBM4
            EvolutionaryTrace:Q96PK6 GenomeRNAi:10432 NextBio:39542
            ArrayExpress:Q96PK6 Bgee:Q96PK6 Genevestigator:Q96PK6
            GermOnline:ENSG00000173959 Uniprot:Q96PK6
        Length = 669

 Score = 272 (100.8 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 66/168 (39%), Positives = 97/168 (57%)

Query:    37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
             KIF+GNV+   T+ E +  LF  YG V+ C V+K + FVHM  +     AI+ L+G  + 
Sbjct:     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61

Query:    96 E-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
               + L +E   SR  P   T K+FVGN+S    + E+R LF   G V+ECD+V++Y FVH
Sbjct:    62 PGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118

Query:   155 IDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKS 201
             ++   D    I +LNG  V GK + V++ST   ++ PG+  V  G K+
Sbjct:   119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL-AVQSGDKT 165

 Score = 200 (75.5 bits), Expect = 5.6e-15, P = 5.6e-15
 Identities = 37/80 (46%), Positives = 57/80 (71%)

Query:    33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
             + T+KIF+GNV+   + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct:    76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135

Query:    93 IVNEKPLKIEAATS--RKGP 110
              V  K + +E +T   +KGP
Sbjct:   136 EVKGKRINVELSTKGQKKGP 155


>UNIPROTKB|E2RS43 [details] [associations]
            symbol:RBM14 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0030374
            "ligand-dependent nuclear receptor transcription coactivator
            activity" evidence=IEA] [GO:0016575 "histone deacetylation"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003676
            GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
            GeneTree:ENSGT00390000020883 CTD:10432 KO:K13189 OMA:SLTSYGA
            EMBL:AAEX03011624 EMBL:AAEX03011625 RefSeq:XP_852283.2
            ProteinModelPortal:E2RS43 Ensembl:ENSCAFT00000019697 GeneID:610639
            KEGG:cfa:610639 NextBio:20896193 Uniprot:E2RS43
        Length = 669

 Score = 271 (100.5 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 65/168 (38%), Positives = 97/168 (57%)

Query:    37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
             KIF+GNV+   T+ E +  LF  YG V+ C V+K + FVHM  +     AI+ L+G  + 
Sbjct:     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61

Query:    96 E-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
               + L +E   SR  P   T K+FVGN+S    + E+R LF   G V+ECD+V++Y FVH
Sbjct:    62 PGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118

Query:   155 IDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKS 201
             ++   D    I +LNG  V GK + V++ST   ++ PG+  +  G K+
Sbjct:   119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL-AIQSGDKT 165

 Score = 200 (75.5 bits), Expect = 5.6e-15, P = 5.6e-15
 Identities = 37/80 (46%), Positives = 57/80 (71%)

Query:    33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
             + T+KIF+GNV+   + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct:    76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135

Query:    93 IVNEKPLKIEAATS--RKGP 110
              V  K + +E +T   +KGP
Sbjct:   136 EVKGKRINVELSTKGQKKGP 155


>UNIPROTKB|F1MI47 [details] [associations]
            symbol:RBM14 "RNA-binding protein 14" species:9913 "Bos
            taurus" [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0030374 "ligand-dependent
            nuclear receptor transcription coactivator activity" evidence=IEA]
            [GO:0016575 "histone deacetylation" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003676 GO:GO:0005667 GO:GO:0030374
            GO:GO:0016575 GeneTree:ENSGT00390000020883 IPI:IPI00690613
            UniGene:Bt.91172 OMA:SLTSYGA EMBL:DAAA02063594
            Ensembl:ENSBTAT00000001619 Uniprot:F1MI47
        Length = 669

 Score = 270 (100.1 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 65/168 (38%), Positives = 97/168 (57%)

Query:    37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
             KIF+GNV+   T+ E +  LF  YG V+ C V+K + FVHM  +     AI+ L+G  + 
Sbjct:     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61

Query:    96 E-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
               + L +E   SR  P   T K+FVGN+S    + E+R LF   G V+ECD+V++Y FVH
Sbjct:    62 PGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118

Query:   155 IDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKS 201
             ++   D    I +LNG  V GK + V++ST   ++ PG+  +  G K+
Sbjct:   119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL-AIQSGDKT 165

 Score = 200 (75.5 bits), Expect = 5.6e-15, P = 5.6e-15
 Identities = 37/80 (46%), Positives = 57/80 (71%)

Query:    33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
             + T+KIF+GNV+   + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct:    76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135

Query:    93 IVNEKPLKIEAATS--RKGP 110
              V  K + +E +T   +KGP
Sbjct:   136 EVKGKRINVELSTKGQKKGP 155


>UNIPROTKB|Q5EA36 [details] [associations]
            symbol:RBM14 "RNA-binding protein 14" species:9913 "Bos
            taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
            GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351
            GO:GO:0003723 eggNOG:COG0724 EMBL:BT020733 IPI:IPI00690613
            RefSeq:NP_001014901.1 UniGene:Bt.91172 ProteinModelPortal:Q5EA36
            SMR:Q5EA36 STRING:Q5EA36 PRIDE:Q5EA36 GeneID:511512 KEGG:bta:511512
            CTD:10432 HOGENOM:HOG000065673 HOVERGEN:HBG053180 InParanoid:Q5EA36
            KO:K13189 OrthoDB:EOG45X7XS NextBio:20869968 Uniprot:Q5EA36
        Length = 669

 Score = 270 (100.1 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 65/168 (38%), Positives = 97/168 (57%)

Query:    37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
             KIF+GNV+   T+ E +  LF  YG V+ C V+K + FVHM  +     AI+ L+G  + 
Sbjct:     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61

Query:    96 E-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
               + L +E   SR  P   T K+FVGN+S    + E+R LF   G V+ECD+V++Y FVH
Sbjct:    62 PGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118

Query:   155 IDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKS 201
             ++   D    I +LNG  V GK + V++ST   ++ PG+  +  G K+
Sbjct:   119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGL-AIQSGDKT 165

 Score = 200 (75.5 bits), Expect = 5.6e-15, P = 5.6e-15
 Identities = 37/80 (46%), Positives = 57/80 (71%)

Query:    33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
             + T+KIF+GNV+   + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct:    76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135

Query:    93 IVNEKPLKIEAATS--RKGP 110
              V  K + +E +T   +KGP
Sbjct:   136 EVKGKRINVELSTKGQKKGP 155


>MGI|MGI:1929092 [details] [associations]
            symbol:Rbm14 "RNA binding motif protein 14" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005667 "transcription factor complex" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0016575 "histone deacetylation" evidence=ISO]
            [GO:0030374 "ligand-dependent nuclear receptor transcription
            coactivator activity" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1929092 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006351
            GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
            eggNOG:COG0724 GeneTree:ENSGT00390000020883 CTD:10432
            HOGENOM:HOG000065673 HOVERGEN:HBG053180 KO:K13189 OrthoDB:EOG45X7XS
            OMA:SLTSYGA ChiTaRS:RBM14 EMBL:AK004928 EMBL:AK088201 EMBL:AK167503
            EMBL:BC010294 IPI:IPI00404707 IPI:IPI00649362 RefSeq:NP_063922.2
            UniGene:Mm.276338 UniGene:Mm.441002 ProteinModelPortal:Q8C2Q3
            SMR:Q8C2Q3 DIP:DIP-58946N IntAct:Q8C2Q3 STRING:Q8C2Q3
            PhosphoSite:Q8C2Q3 PaxDb:Q8C2Q3 PRIDE:Q8C2Q3
            Ensembl:ENSMUST00000006625 GeneID:56275 KEGG:mmu:56275
            UCSC:uc008gay.1 UCSC:uc008gaz.1 InParanoid:Q8C2Q3 NextBio:312164
            Bgee:Q8C2Q3 CleanEx:MM_RBM14 Genevestigator:Q8C2Q3
            GermOnline:ENSMUSG00000006456 Uniprot:Q8C2Q3
        Length = 669

 Score = 264 (98.0 bits), Expect = 7.3e-22, P = 7.3e-22
 Identities = 64/168 (38%), Positives = 96/168 (57%)

Query:    37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
             KIF+GNV+   T+ E +  LF  YG V+ C V+K + FVHM  +     AI+ L+G  + 
Sbjct:     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61

Query:    96 E-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
               + L +E   SR  P   T K+FVGN+S    + E+R LF   G V+ECD+V++Y FVH
Sbjct:    62 PGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVH 118

Query:   155 IDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKS 201
             ++   D    I +LNG  V GK + V++ST   ++ P +  +  G K+
Sbjct:   119 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPAL-AIQSGDKT 165

 Score = 200 (75.5 bits), Expect = 5.6e-15, P = 5.6e-15
 Identities = 37/80 (46%), Positives = 57/80 (71%)

Query:    33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
             + T+KIF+GNV+   + + +R LFE+ G+V+ECDVVK+Y FVHME + + + AI +LNG+
Sbjct:    76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGK 135

Query:    93 IVNEKPLKIEAATS--RKGP 110
              V  K + +E +T   +KGP
Sbjct:   136 EVKGKRINVELSTKGQKKGP 155


>UNIPROTKB|E9PTC9 [details] [associations]
            symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1306891 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00781602 Ensembl:ENSRNOT00000054844 ArrayExpress:E9PTC9
            Uniprot:E9PTC9
        Length = 615

 Score = 243 (90.6 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 62/168 (36%), Positives = 91/168 (54%)

Query:    37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
             KIF+GNV+   T+ E +  LF  YG V+ C V+K + FVHM  +     AI+ L+G  + 
Sbjct:     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61

Query:    96 E-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
               + L +E   SR  P   T K+FVGN+S    + E+R LF   G V+ECD+V+ Y F H
Sbjct:    62 PGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKVYSFAH 118

Query:   155 IDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKS 201
             +D   D       LN   V GK + V++ST   ++ P +  +  G K+
Sbjct:   119 LDKQADAEPACMCLNRSEVSGKRINVELSTKGQKKGPAL-AIQSGDKT 165

 Score = 162 (62.1 bits), Expect = 6.0e-11, P = 6.0e-11
 Identities = 32/80 (40%), Positives = 50/80 (62%)

Query:    33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
             + T+KIF+GNV+   + + +R LFE+ G+V+ECDVVK Y F H++   +   A   LN  
Sbjct:    76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKVYSFAHLDKQADAEPACMCLNRS 135

Query:    93 IVNEKPLKIEAATS--RKGP 110
              V+ K + +E +T   +KGP
Sbjct:   136 EVSGKRINVELSTKGQKKGP 155


>UNIPROTKB|E9PTZ4 [details] [associations]
            symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1306891 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003676 GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
            IPI:IPI00948500 Ensembl:ENSRNOT00000026621 ArrayExpress:E9PTZ4
            Uniprot:E9PTZ4
        Length = 667

 Score = 243 (90.6 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 62/168 (36%), Positives = 91/168 (54%)

Query:    37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
             KIF+GNV+   T+ E +  LF  YG V+ C V+K + FVHM  +     AI+ L+G  + 
Sbjct:     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61

Query:    96 E-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
               + L +E   SR  P   T K+FVGN+S    + E+R LF   G V+ECD+V+ Y F H
Sbjct:    62 PGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKVYSFAH 118

Query:   155 IDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKS 201
             +D   D       LN   V GK + V++ST   ++ P +  +  G K+
Sbjct:   119 LDKQADAEPACMCLNRSEVSGKRINVELSTKGQKKGPAL-AIQSGDKT 165

 Score = 162 (62.1 bits), Expect = 6.7e-11, P = 6.7e-11
 Identities = 32/80 (40%), Positives = 50/80 (62%)

Query:    33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
             + T+KIF+GNV+   + + +R LFE+ G+V+ECDVVK Y F H++   +   A   LN  
Sbjct:    76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKVYSFAHLDKQADAEPACMCLNRS 135

Query:    93 IVNEKPLKIEAATS--RKGP 110
              V+ K + +E +T   +KGP
Sbjct:   136 EVSGKRINVELSTKGQKKGP 155


>UNIPROTKB|B0LM41 [details] [associations]
            symbol:RBM14/RBM4 fusion "Transcriptional coactivator CoAZ"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001157 UniGene:Hs.533712
            GeneID:100526737 CTD:100526737 ChiTaRS:RBM14-RBM4
            HOGENOM:HOG000026790 HOVERGEN:HBG062217 UniGene:Hs.523822
            EMBL:EU287938 IPI:IPI00719549 RefSeq:NP_001185774.1 SMR:B0LM41
            STRING:B0LM41 Ensembl:ENST00000412278 KEGG:hsa:100526737
            UCSC:uc009yrk.3 HGNC:HGNC:38840 OrthoDB:EOG4M65KF
            GenomeRNAi:100526737 Uniprot:B0LM41
        Length = 339

 Score = 188 (71.2 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
 Identities = 46/114 (40%), Positives = 66/114 (57%)

Query:    37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
             KIF+GNV+   T+ E +  LF  YG V+ C V+K + FVHM  +     AI+ L+G  + 
Sbjct:     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61

Query:    96 E-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
               + L +E   SR  P   T K+FVGN+S    + E+R LF   G V+ECD+V+
Sbjct:    62 PGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112

 Score = 116 (45.9 bits), Expect = 0.00010, P = 0.00010
 Identities = 25/73 (34%), Positives = 44/73 (60%)

Query:   116 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMV- 172
             K+FVGN+      PE +  LF PYGTV+ C +++ + FVH+ ++    + I+ L+G  + 
Sbjct:     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61

Query:   173 DGKPMKVQISTSR 185
              G+ + V++S  R
Sbjct:    62 PGRALVVEMSRPR 74

 Score = 107 (42.7 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
 Identities = 19/37 (51%), Positives = 29/37 (78%)

Query:    33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 69
             + T+KIF+GNV+   + + +R LFE+ G+V+ECDVVK
Sbjct:    76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112

 Score = 65 (27.9 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query:   171 MVDGKPMKVQISTSRVRQRPGVDE 194
             +V GK M VQ+STSR+R  PG+ +
Sbjct:   110 VVKGKRMHVQLSTSRLRTAPGMGD 133


>ZFIN|ZDB-GENE-050522-496 [details] [associations]
            symbol:rbm14a "RNA binding motif protein 14a"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            ZFIN:ZDB-GENE-050522-496 GO:GO:0000166 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            GeneTree:ENSGT00390000020883 EMBL:BX511175 EMBL:BC095368
            EMBL:BC157376 IPI:IPI00487638 RefSeq:NP_001108616.1
            UniGene:Dr.77963 STRING:Q503D7 Ensembl:ENSDART00000009234
            Ensembl:ENSDART00000122073 GeneID:323721 KEGG:dre:323721 CTD:323721
            HOGENOM:HOG000063724 HOVERGEN:HBG062132 InParanoid:Q503D7
            OMA:HMERKEE OrthoDB:EOG4Q2DFQ NextBio:20808405 Uniprot:Q503D7
        Length = 471

 Score = 229 (85.7 bits), Expect = 1.9e-18, P = 1.9e-18
 Identities = 53/160 (33%), Positives = 95/160 (59%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+F+GN++  T+ + +  LF  +G+VV   V++ + FVH++ +    +AI++LNG+    
Sbjct:     8 KLFVGNLDLETTQDDLIALFAPFGEVVHITVLRQFAFVHLQGEGAADSAIRDLNGREYRG 67

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN------- 149
             + L +E +   KG    +TKVFVGNL  +    ++ +LF PYG V++CD V+        
Sbjct:    68 RSLVVEES---KGRPLNSTKVFVGNLCASCSVEDLYDLFSPYGKVLDCDKVKTKPSSLTG 124

Query:   150 YGFVHID-SPDINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
             Y FV+++   D  + I+ L+G    G+P+ V++S  +V+Q
Sbjct:   125 YAFVYMEHKEDAEQAIEGLHGTTFMGRPLAVELS--KVQQ 162

 Score = 138 (53.6 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
 Identities = 31/82 (37%), Positives = 47/82 (57%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKEL 89
             K+F+GN+    SVE +  LF  YGKV++CD VK        Y FV+ME+ E+   AI+ L
Sbjct:    84 KVFVGNLCASCSVEDLYDLFSPYGKVLDCDKVKTKPSSLTGYAFVYMEHKEDAEQAIEGL 143

Query:    90 NGQIVNEKPLKIEAATSRKGPN 111
             +G     +PL +E +  ++  N
Sbjct:   144 HGTTFMGRPLAVELSKVQQSTN 165

 Score = 118 (46.6 bits), Expect = 0.00010, P = 0.00010
 Identities = 25/76 (32%), Positives = 41/76 (53%)

Query:   111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDI-NKCIKELNG 169
             ++   K+FVGNL   T   ++  LF P+G VV   ++R + FVH+      +  I++LNG
Sbjct:     3 DSSAVKLFVGNLDLETTQDDLIALFAPFGEVVHITVLRQFAFVHLQGEGAADSAIRDLNG 62

Query:   170 MMVDGKPMKVQISTSR 185
                 G+ + V+ S  R
Sbjct:    63 REYRGRSLVVEESKGR 78

 Score = 45 (20.9 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query:   164 IKELNGMMVDGKPMKVQISTSRVRQ-RPGVDEVVIGQKS 201
             +K+L    VDGKP+   +  +   Q    V + VIG  S
Sbjct:   234 LKDLTTSRVDGKPVSSMVYGALASQVYSSVADQVIGSTS 272


>WB|WBGene00004384 [details] [associations]
            symbol:rnp-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
            "reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003723
            EMBL:Z78019 EMBL:U21302 eggNOG:NOG294108
            GeneTree:ENSGT00390000020883 PIR:T28063 RefSeq:NP_001256408.1
            ProteinModelPortal:Q10667 SMR:Q10667 DIP:DIP-24668N IntAct:Q10667
            MINT:MINT-1103041 STRING:Q10667 PaxDb:Q10667
            EnsemblMetazoa:ZK863.7a GeneID:179672 KEGG:cel:CELE_ZK863.7
            UCSC:ZK863.7 CTD:179672 WormBase:ZK863.7 HOGENOM:HOG000022464
            InParanoid:Q10667 OMA:FCKVTEC NextBio:906394 ArrayExpress:Q10667
            Uniprot:Q10667
        Length = 305

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 35/78 (44%), Positives = 55/78 (70%)

Query:   115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDG 174
             +K+FVGNL DN  + +++++F P+  V ECDIV+NY FVHI+  D++  I  L G  +DG
Sbjct:     3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEEDDVDPIITRLTGYTIDG 62

Query:   175 KPMKVQISTSRVRQRPGV 192
             K + ++ STS++R  PG+
Sbjct:    63 KVVNIKKSTSKLRPTPGM 80

 Score = 146 (56.5 bits), Expect = 7.2e-09, P = 7.2e-09
 Identities = 34/96 (35%), Positives = 53/96 (55%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             K+F+GN+        ++ +F+ + KV ECD+VKNY FVH+E D+     I  L G  ++ 
Sbjct:     4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEEDDVD-PIITRLTGYTIDG 62

Query:    97 KPLKIEAATSRKGPNTP--TTKVFVGNLSDNTRAPE 130
             K + I+ +TS+  P TP    + F    SD  R P+
Sbjct:    63 KVVNIKKSTSKLRP-TPGMPNRCFRCQ-SDEHRTPQ 96


>UNIPROTKB|F8WDX3 [details] [associations]
            symbol:RBM14 "RNA-binding protein 14" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
            HGNC:HGNC:14219 ChiTaRS:RBM14 IPI:IPI00916896
            ProteinModelPortal:F8WDX3 SMR:F8WDX3 Ensembl:ENST00000443702
            ArrayExpress:F8WDX3 Bgee:F8WDX3 Uniprot:F8WDX3
        Length = 129

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 47/116 (40%), Positives = 67/116 (57%)

Query:    37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
             KIF+GNV+   T+ E +  LF  YG V+ C V+K + FVHM  +     AI+ L+G  + 
Sbjct:     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61

Query:    96 E-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY 150
               + L +E   SR  P   T K+FVGN+S    + E+R LF   G V+ECD+V+ Y
Sbjct:    62 PGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKGY 114

 Score = 116 (45.9 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 25/73 (34%), Positives = 44/73 (60%)

Query:   116 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMV- 172
             K+FVGN+      PE +  LF PYGTV+ C +++ + FVH+ ++    + I+ L+G  + 
Sbjct:     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61

Query:   173 DGKPMKVQISTSR 185
              G+ + V++S  R
Sbjct:    62 PGRALVVEMSRPR 74

 Score = 114 (45.2 bits), Expect = 9.6e-07, P = 9.6e-07
 Identities = 20/39 (51%), Positives = 30/39 (76%)

Query:    33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 71
             + T+KIF+GNV+   + + +R LFE+ G+V+ECDVVK Y
Sbjct:    76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKGY 114


>UNIPROTKB|B8ZZ74 [details] [associations]
            symbol:RBM14 "RNA-binding protein 14" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
            HOVERGEN:HBG002295 HGNC:HGNC:14219 ChiTaRS:RBM14 IPI:IPI00917085
            ProteinModelPortal:B8ZZ74 SMR:B8ZZ74 STRING:B8ZZ74 PRIDE:B8ZZ74
            Ensembl:ENST00000409372 HOGENOM:HOG000089965 ArrayExpress:B8ZZ74
            Bgee:B8ZZ74 Uniprot:B8ZZ74
        Length = 159

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 46/114 (40%), Positives = 66/114 (57%)

Query:    37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
             KIF+GNV+   T+ E +  LF  YG V+ C V+K + FVHM  +     AI+ L+G  + 
Sbjct:     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61

Query:    96 E-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
               + L +E   SR  P   T K+FVGN+S    + E+R LF   G V+ECD+V+
Sbjct:    62 PGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112

 Score = 116 (45.9 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 25/73 (34%), Positives = 44/73 (60%)

Query:   116 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMV- 172
             K+FVGN+      PE +  LF PYGTV+ C +++ + FVH+ ++    + I+ L+G  + 
Sbjct:     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61

Query:   173 DGKPMKVQISTSR 185
              G+ + V++S  R
Sbjct:    62 PGRALVVEMSRPR 74

 Score = 107 (42.7 bits), Expect = 8.0e-05, P = 8.0e-05
 Identities = 19/37 (51%), Positives = 29/37 (78%)

Query:    33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 69
             + T+KIF+GNV+   + + +R LFE+ G+V+ECDVVK
Sbjct:    76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112


>UNIPROTKB|F2Z2W2 [details] [associations]
            symbol:RBM14-RBM4 "Protein RBM14-RBM4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
            ChiTaRS:RBM14-RBM4 HGNC:HGNC:38840 IPI:IPI00916274
            ProteinModelPortal:F2Z2W2 SMR:F2Z2W2 Ensembl:ENST00000421355
            ArrayExpress:F2Z2W2 Bgee:F2Z2W2 Uniprot:F2Z2W2
        Length = 147

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 46/114 (40%), Positives = 66/114 (57%)

Query:    37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
             KIF+GNV+   T+ E +  LF  YG V+ C V+K + FVHM  +     AI+ L+G  + 
Sbjct:     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61

Query:    96 E-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
               + L +E   SR  P   T K+FVGN+S    + E+R LF   G V+ECD+V+
Sbjct:    62 PGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112

 Score = 116 (45.9 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 25/73 (34%), Positives = 44/73 (60%)

Query:   116 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMV- 172
             K+FVGN+      PE +  LF PYGTV+ C +++ + FVH+ ++    + I+ L+G  + 
Sbjct:     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61

Query:   173 DGKPMKVQISTSR 185
              G+ + V++S  R
Sbjct:    62 PGRALVVEMSRPR 74

 Score = 107 (42.7 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 19/37 (51%), Positives = 29/37 (78%)

Query:    33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 69
             + T+KIF+GNV+   + + +R LFE+ G+V+ECDVVK
Sbjct:    76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112


>UNIPROTKB|Q2PYN1 [details] [associations]
            symbol:RBM14 "RNA-binding protein 14" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
            HOVERGEN:HBG002295 CTD:10432 KO:K13189 UniGene:Hs.533712
            DNASU:10432 GeneID:10432 KEGG:hsa:10432 HGNC:HGNC:14219
            ChiTaRS:RBM14 GenomeRNAi:10432 NextBio:39542 HOGENOM:HOG000089965
            EMBL:DQ294957 IPI:IPI00969146 RefSeq:NP_001185766.1 SMR:Q2PYN1
            STRING:Q2PYN1 Ensembl:ENST00000409738 UCSC:uc009yrh.3
            Uniprot:Q2PYN1
        Length = 119

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 46/114 (40%), Positives = 66/114 (57%)

Query:    37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
             KIF+GNV+   T+ E +  LF  YG V+ C V+K + FVHM  +     AI+ L+G  + 
Sbjct:     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61

Query:    96 E-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
               + L +E   SR  P   T K+FVGN+S    + E+R LF   G V+ECD+V+
Sbjct:    62 PGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112

 Score = 116 (45.9 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 25/73 (34%), Positives = 44/73 (60%)

Query:   116 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMV- 172
             K+FVGN+      PE +  LF PYGTV+ C +++ + FVH+ ++    + I+ L+G  + 
Sbjct:     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61

Query:   173 DGKPMKVQISTSR 185
              G+ + V++S  R
Sbjct:    62 PGRALVVEMSRPR 74

 Score = 107 (42.7 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 19/37 (51%), Positives = 29/37 (78%)

Query:    33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 69
             + T+KIF+GNV+   + + +R LFE+ G+V+ECDVVK
Sbjct:    76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112


>UNIPROTKB|A4QUF0 [details] [associations]
            symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
            nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
            EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
            SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
            KEGG:mgr:MGG_09505 Uniprot:A4QUF0
        Length = 762

 Score = 173 (66.0 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
 Identities = 49/175 (28%), Positives = 77/175 (44%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
             P     G   +FI N++     + +   F  +G ++ C V        K YGFVH E DE
Sbjct:   141 PALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDE 200

Query:    81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
                 AIK +NG ++NEK + +     +K   +         T ++V N++      E R 
Sbjct:   201 AASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRT 260

Query:   134 LFVPYGTVVECDIVRN--------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
             LF  YG V    + R+        +GFV+  S  D +K ++ELN     G+ + V
Sbjct:   261 LFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYV 315

 Score = 145 (56.1 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
 Identities = 40/161 (24%), Positives = 79/161 (49%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEGRTAIKEL 89
             +++G ++P  +  ++  LF + G V     C D V      Y +V+     +G  A++EL
Sbjct:    63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122

Query:    90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
             N  ++  +P +I    S++ P    T    VF+ NL        + + F  +G ++ C +
Sbjct:   123 NYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 180

Query:   147 VRN-------YGFVHIDSPDI-NKCIKELNGMMVDGKPMKV 179
              ++       YGFVH ++ +  ++ IK +NGM+++ K + V
Sbjct:   181 AQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 221

 Score = 43 (20.2 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query:   174 GKPMKVQISTSRVRQRPGVDEVVIGQKSVP-VQAL 207
             G P  +Q   + V   PG  + ++G+   P +QA+
Sbjct:   661 GAPEGLQGQLAAVADNPGQQKQILGEAIFPKIQAI 695


>UNIPROTKB|P20965 [details] [associations]
            symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
            species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
            initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
            self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
            EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
            ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
            KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
        Length = 633

 Score = 184 (69.8 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 49/183 (26%), Positives = 84/183 (45%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IFI N++     + +   F  +G ++ C VV      K YGFVH E  E 
Sbjct:    91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI ++NG ++N++ + +    SRK      G      T V++ N  D+     ++E+
Sbjct:   151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEM 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  YG  +   ++       + +GFV  +   D  K + E+NG  ++GK M V  +  +V
Sbjct:   211 FGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 101 (40.6 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
 Identities = 24/80 (30%), Positives = 43/80 (53%)

Query:   117 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNG 169
             ++V NL D      +R+ F+P+GT+    ++      + +GFV   SP+   K + E+NG
Sbjct:   296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355

Query:   170 MMVDGKPMKVQISTSRVRQR 189
              +V  KP+ V ++  R  +R
Sbjct:   356 RIVATKPLYVALA-QRKEER 374

 Score = 92 (37.4 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
 Identities = 23/88 (26%), Positives = 42/88 (47%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
             ++I N     + E ++ +F KYG  +   V+       K +GFV  E  E+ + A+ E+N
Sbjct:   193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252

Query:    91 GQIVNEKPLKIEAATSRKGPNTPTTKVF 118
             G+ +N K + +  A  +    T   + F
Sbjct:   253 GKDMNGKSMFVGRAQKKVERQTELKRKF 280


>UNIPROTKB|D4AC21 [details] [associations]
            symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
            ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
            ArrayExpress:D4AC21 Uniprot:D4AC21
        Length = 588

 Score = 183 (69.5 bits), Expect = 3.0e-13, P = 3.0e-13
 Identities = 48/183 (26%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   +FI N++     + +   F  +G ++ C VV      K Y FVH E  E 
Sbjct:    20 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 79

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  +      +REL
Sbjct:    80 ANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLREL 139

Query:   135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++R+       +GFV  +   D NK ++E+NG  + GK + V  +  +V
Sbjct:   140 FSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV 199

Query:   187 RQR 189
              ++
Sbjct:   200 ERQ 202


>FB|FBgn0005649 [details] [associations]
            symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
            [GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
            binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
            GO:GO:0000381 HSSP:P11940 GO:GO:0005685
            GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
            FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
            UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
            STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
            EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
            KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
            GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
        Length = 470

 Score = 181 (68.8 bits), Expect = 3.3e-13, P = 3.3e-13
 Identities = 45/167 (26%), Positives = 80/167 (47%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
             +++GN++   S +L+  LF   G V  C +++      Y F+   N +   TA+  +N +
Sbjct:     9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKR 68

Query:    93 IVNEKPLKIEAATSRKG-PNTPTTK---VFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
             +  EK +K+  ATS    P T  +    +FVG+LS       +RE F P+G +  C IVR
Sbjct:    69 LFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVR 128

Query:   149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
             +        Y FV  +   +    I+ +NG  +  + ++   ST ++
Sbjct:   129 DPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKL 175


>UNIPROTKB|D4AC14 [details] [associations]
            symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
            Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
        Length = 631

 Score = 183 (69.5 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 48/183 (26%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   +FI N++     + +   F  +G ++ C VV      K Y FVH E  E 
Sbjct:    91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  +      +REL
Sbjct:   151 ANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLREL 210

Query:   135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++R+       +GFV  +   D NK ++E+NG  + GK + V  +  +V
Sbjct:   211 FSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 132 (51.5 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 42/189 (22%), Positives = 92/189 (48%)

Query:    31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEG 82
             SS     +++G+++   +  ++   F   G V+    C D++      Y +V+ +   + 
Sbjct:     6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65

Query:    83 RTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYG 139
               A+  +N  ++  KP++I    S++ P+   +    VF+ NL  +     + + F  +G
Sbjct:    66 ERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123

Query:   140 TVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
              ++ C +V      + Y FVH ++ +  NK I+++NGM+++ + + V    SR ++R   
Sbjct:   124 NILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSR-KER--- 179

Query:   193 DEVVIGQKS 201
              E  +G K+
Sbjct:   180 -EAELGAKA 187


>UNIPROTKB|G3V9N0 [details] [associations]
            symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
            OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
        Length = 660

 Score = 183 (69.5 bits), Expect = 3.7e-13, P = 3.7e-13
 Identities = 48/183 (26%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   +FI N++     + +   F  +G ++ C VV      K Y FVH E  E 
Sbjct:    91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  +      +REL
Sbjct:   151 ANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLREL 210

Query:   135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++R+       +GFV  +   D NK ++E+NG  + GK + V  +  +V
Sbjct:   211 FSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 132 (51.5 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 42/189 (22%), Positives = 92/189 (48%)

Query:    31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEG 82
             SS     +++G+++   +  ++   F   G V+    C D++      Y +V+ +   + 
Sbjct:     6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65

Query:    83 RTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYG 139
               A+  +N  ++  KP++I    S++ P+   +    VF+ NL  +     + + F  +G
Sbjct:    66 ERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123

Query:   140 TVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
              ++ C +V      + Y FVH ++ +  NK I+++NGM+++ + + V    SR ++R   
Sbjct:   124 NILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSR-KER--- 179

Query:   193 DEVVIGQKS 201
              E  +G K+
Sbjct:   180 -EAELGAKA 187


>UNIPROTKB|E1C903 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
            EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
            UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
            Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
            NextBio:20822696 Uniprot:E1C903
        Length = 630

 Score = 181 (68.8 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 47/183 (25%), Positives = 86/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   +FI N++     + +   F  +G ++ C VV      K Y FVH E  + 
Sbjct:    91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  D+     ++EL
Sbjct:   151 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEL 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  YG  +   ++       + +GFV  +   D NK ++E+NG  ++GK + V  +  +V
Sbjct:   211 FSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 136 (52.9 bits), Expect = 8.4e-07, P = 8.4e-07
 Identities = 42/189 (22%), Positives = 93/189 (49%)

Query:    31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEG 82
             SS     +++G+++P  +  ++   F   G V+    C D++      Y +V+ +   + 
Sbjct:     6 SSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65

Query:    83 RTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYG 139
               A+  +N  ++  KP++I    S++ P+   +    VF+ NL  +     + + F  +G
Sbjct:    66 ERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123

Query:   140 TVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
              ++ C +V      + Y FVH ++ D  ++ I+++NGM+++ + + V    SR ++R   
Sbjct:   124 NILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR-KER--- 179

Query:   193 DEVVIGQKS 201
              E  +G K+
Sbjct:   180 -EAELGAKA 187


>DICTYBASE|DDB_G0293558 [details] [associations]
            symbol:pabpc1A "polyadenylate binding protein (PABP)"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
            GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
            ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
            EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
            ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
        Length = 565

 Score = 180 (68.4 bits), Expect = 6.0e-13, P = 6.0e-13
 Identities = 48/169 (28%), Positives = 79/169 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
             P     G   +FI N++ G   + +   F  +G ++ C VV       K +GFVH E  E
Sbjct:    90 PSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQE 149

Query:    81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT----TKVFVGNLSDNTRAPEVRELFV 136
                 AI ++NG ++N + + +    S K    PT    T VF  NLS++    +++EL  
Sbjct:   150 SADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQ 209

Query:   137 PYGTVVECDIV-------RNYGFVHIDSPDINKCIKEL-NGMMVDGKPM 177
              YG +    I+       + +GF + +S +  K + E  NG +  GKP+
Sbjct:   210 QYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPI 258

 Score = 134 (52.2 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 46/177 (25%), Positives = 85/177 (48%)

Query:    30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECD---VVKNYGFVHMENDEEGRTAI 86
             F++V  FK    +V P    EL++   E     +  D     K +GF + E+ E  +  +
Sbjct:   187 FTNV-FFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVV 245

Query:    87 KELNGQIVNEKPL-------KIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEVREL 134
             +  NG+I + KP+       KIE     K  +T  TK     +++ N+ D+    ++RE+
Sbjct:   246 ENENGKIFHGKPIYAGRAQKKIEREAELK--HTFETKYQGVNLYIKNIDDSIDNDKLREV 303

Query:   135 FVPYGTVVECDIVRN--------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQIS 182
             F  +GT+    ++++        +GFV   +PD   + + E+NG M+  KP+ V ++
Sbjct:   304 FSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALA 360

 Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
 Identities = 33/133 (24%), Positives = 66/133 (49%)

Query:    70 NYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNT 126
             +Y +V+  N  +   A+  LN   +  K  +I    S++ P+   +    VF+ NL    
Sbjct:    52 SYAYVNYYNGADAERALDTLNNTPIRGKACRI--MWSQRDPSLRKSGVGNVFIKNLDKGI 109

Query:   127 RAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMK 178
                 + + F  +G ++ C +V       + +GFVH ++ +  +K I ++NGMM++G+ + 
Sbjct:   110 DHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVF 169

Query:   179 V-QISTSRVRQRP 190
             V    +S+ R +P
Sbjct:   170 VGPFKSSKERGQP 182


>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
            symbol:pabpc1l "poly(A) binding protein,
            cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
            HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
            UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
            GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
            Bgee:Q803E7 Uniprot:Q803E7
        Length = 620

 Score = 179 (68.1 bits), Expect = 9.0e-13, P = 9.0e-13
 Identities = 49/185 (26%), Positives = 90/185 (48%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             PG    G   IFI N++     + +   F  +G ++ C VV      K YGFVH E  E 
Sbjct:    91 PGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+ +NG ++N++ + +    SRK      G      T V++ N  ++  + +++ +
Sbjct:   151 ANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNI 210

Query:   135 FVPYG-TVVECDIV------RNYGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G T+  C +       R +GFV+ ++  D  + + E+NG  ++G+ + V  +  R+
Sbjct:   211 FTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRL 270

Query:   187 RQRPG 191
              +R G
Sbjct:   271 -ERQG 274

 Score = 135 (52.6 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 36/181 (19%), Positives = 91/181 (50%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEGRTAIKEL 89
             +++G+++   +  ++   F   G+++    C DV+      Y +++ +   +   A+  +
Sbjct:    13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72

Query:    90 NGQIVNEKPLKIEAATSRKG-PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
             N +++  +P++I  +    G   +    +F+ N+ ++     + + F  +G ++ C +V 
Sbjct:    73 NYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVC 132

Query:   148 -----RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKS 201
                  + YGFVH ++ +  N+ I+ +NGM+++ + + V    SR ++R    E  +G K+
Sbjct:   133 DENGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSR-KER----EAEMGAKA 187

Query:   202 V 202
             V
Sbjct:   188 V 188

 Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
 Identities = 35/125 (28%), Positives = 61/125 (48%)

Query:    87 KELNGQIVN----EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVREL 134
             KELNG+++     +K L+ +    RK       ++        +V NL D+    ++R+ 
Sbjct:   254 KELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKE 313

Query:   135 FVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVR 187
             F PYGT+    ++      R +GFV   SP+   K + E+NG +V  KP+ V ++  R  
Sbjct:   314 FAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA-QRKE 372

Query:   188 QRPGV 192
             +R  +
Sbjct:   373 ERKAI 377


>UNIPROTKB|E2R9I0 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
            EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
            Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
        Length = 631

 Score = 179 (68.1 bits), Expect = 9.2e-13, P = 9.2e-13
 Identities = 47/183 (25%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   +FI N++     + +   F  +G ++ C VV      K Y FVH E  E 
Sbjct:    91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  +      ++EL
Sbjct:   151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210

Query:   135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++R+       +GFV  +   D NK ++E+NG  + GK + V  +  +V
Sbjct:   211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 41/189 (21%), Positives = 92/189 (48%)

Query:    31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEG 82
             SS     +++G+++   +  ++   F   G V+    C D++      Y +V+ +   + 
Sbjct:     6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65

Query:    83 RTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYG 139
               A+  +N  ++  KP++I    S++ P+   +    VF+ NL  +     + + F  +G
Sbjct:    66 ERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123

Query:   140 TVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
              ++ C +V      + Y FVH ++ +  +K I+++NGM+++ + + V    SR ++R   
Sbjct:   124 NILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR-KER--- 179

Query:   193 DEVVIGQKS 201
              E  +G K+
Sbjct:   180 -EAELGAKA 187


>UNIPROTKB|F1SV06 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
            GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
            EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
        Length = 631

 Score = 179 (68.1 bits), Expect = 9.2e-13, P = 9.2e-13
 Identities = 47/183 (25%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   +FI N++     + +   F  +G ++ C VV      K Y FVH E  E 
Sbjct:    91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  +      ++EL
Sbjct:   151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKEL 210

Query:   135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++R+       +GFV  +   D NK ++E+NG  + GK + V  +  +V
Sbjct:   211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 41/189 (21%), Positives = 92/189 (48%)

Query:    31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEG 82
             SS     +++G+++   +  ++   F   G V+    C D++      Y +V+ +   + 
Sbjct:     6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65

Query:    83 RTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYG 139
               A+  +N  ++  KP++I    S++ P+   +    VF+ NL  +     + + F  +G
Sbjct:    66 ERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123

Query:   140 TVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
              ++ C +V      + Y FVH ++ +  +K I+++NGM+++ + + V    SR ++R   
Sbjct:   124 NILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR-KER--- 179

Query:   193 DEVVIGQKS 201
              E  +G K+
Sbjct:   180 -EAELGAKA 187


>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
            symbol:pabpc4 "poly(A) binding protein,
            cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
            EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
            ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
            GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
            NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
        Length = 637

 Score = 179 (68.1 bits), Expect = 9.4e-13, P = 9.4e-13
 Identities = 47/173 (27%), Positives = 81/173 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   +FI N++     + +   F  +G ++ C VV      K Y FVH E  + 
Sbjct:    92 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDA 151

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  D+     ++EL
Sbjct:   152 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKEL 211

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
             F  YG  +   ++       R +GFV  +   D NK ++E+NG  ++GK + V
Sbjct:   212 FDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFV 264

 Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 37/166 (22%), Positives = 83/166 (50%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEGRTAIKEL 89
             +++G+++P  +  ++   F   G V+    C D++      Y +V+ +   +   A+  +
Sbjct:    14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73

Query:    90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
             N  +V  KP++I    S++ P+   +    VF+ NL  +     + + F  +G ++ C +
Sbjct:    74 NFDVVKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 131

Query:   147 V------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSR 185
             V      + Y FVH ++ D  ++ I+++NGM+++ + + V    SR
Sbjct:   132 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR 177

 Score = 104 (41.7 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 28/120 (23%), Positives = 60/120 (50%)

Query:    99 LKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGF 152
             LK E  +  +G N     +++ NL D     ++R+ F P+G++    ++      + +GF
Sbjct:   284 LKQERISRYQGVN-----LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGF 338

Query:   153 VHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVD----EVVIGQKSVPVQAL 207
             V   SP+   K + E+NG +V  KP+ V ++  +  ++  +     + + G +++P  A+
Sbjct:   339 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAI 398

 Score = 92 (37.4 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 21/77 (27%), Positives = 39/77 (50%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKELN 90
             ++I N       + ++ LF+KYGK +   V+       + +GFV  E  E+   A++E+N
Sbjct:   194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMN 253

Query:    91 GQIVNEKPLKIEAATSR 107
             G  +N K + +  A  +
Sbjct:   254 GTELNGKTVFVGRAQKK 270


>UNIPROTKB|E2R9I1 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
            InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
            Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
        Length = 700

 Score = 179 (68.1 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 47/183 (25%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   +FI N++     + +   F  +G ++ C VV      K Y FVH E  E 
Sbjct:   131 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 190

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  +      ++EL
Sbjct:   191 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 250

Query:   135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++R+       +GFV  +   D NK ++E+NG  + GK + V  +  +V
Sbjct:   251 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV 310

Query:   187 RQR 189
              ++
Sbjct:   311 ERQ 313


>UNIPROTKB|B1ANR0 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
            EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
            HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
            UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
            SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
        Length = 615

 Score = 178 (67.7 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 47/183 (25%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   +FI N++     + +   F  +G ++ C VV      K Y FVH E  E 
Sbjct:    91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  +      ++EL
Sbjct:   151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210

Query:   135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++R+       +GFV  +   D NK ++E+NG  + GK + V  +  +V
Sbjct:   211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 41/189 (21%), Positives = 92/189 (48%)

Query:    31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEG 82
             SS     +++G+++   +  ++   F   G V+    C D++      Y +V+ +   + 
Sbjct:     6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65

Query:    83 RTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYG 139
               A+  +N  ++  KP++I    S++ P+   +    VF+ NL  +     + + F  +G
Sbjct:    66 ERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123

Query:   140 TVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
              ++ C +V      + Y FVH ++ +  +K I+++NGM+++ + + V    SR ++R   
Sbjct:   124 NILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR-KER--- 179

Query:   193 DEVVIGQKS 201
              E  +G K+
Sbjct:   180 -EAELGAKA 187


>UNIPROTKB|Q13310 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
            "cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
            binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
            coagulation" evidence=TAS] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
            GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
            GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
            EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
            IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
            RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
            UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
            IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
            DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
            Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
            KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
            GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
            neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
            PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
            NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
            Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
        Length = 644

 Score = 178 (67.7 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 47/183 (25%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   +FI N++     + +   F  +G ++ C VV      K Y FVH E  E 
Sbjct:    91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  +      ++EL
Sbjct:   151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210

Query:   135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++R+       +GFV  +   D NK ++E+NG  + GK + V  +  +V
Sbjct:   211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 41/189 (21%), Positives = 92/189 (48%)

Query:    31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEG 82
             SS     +++G+++   +  ++   F   G V+    C D++      Y +V+ +   + 
Sbjct:     6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65

Query:    83 RTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYG 139
               A+  +N  ++  KP++I    S++ P+   +    VF+ NL  +     + + F  +G
Sbjct:    66 ERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123

Query:   140 TVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
              ++ C +V      + Y FVH ++ +  +K I+++NGM+++ + + V    SR ++R   
Sbjct:   124 NILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR-KER--- 179

Query:   193 DEVVIGQKS 201
              E  +G K+
Sbjct:   180 -EAELGAKA 187


>UNIPROTKB|A4IFC3 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
            OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
            IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
            Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
            InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
        Length = 645

 Score = 178 (67.7 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 47/183 (25%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   +FI N++     + +   F  +G ++ C VV      K Y FVH E  E 
Sbjct:    91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  +      ++EL
Sbjct:   151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKEL 210

Query:   135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++R+       +GFV  +   D NK ++E+NG  + GK + V  +  +V
Sbjct:   211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 41/189 (21%), Positives = 92/189 (48%)

Query:    31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEG 82
             SS     +++G+++   +  ++   F   G V+    C D++      Y +V+ +   + 
Sbjct:     6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65

Query:    83 RTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYG 139
               A+  +N  ++  KP++I    S++ P+   +    VF+ NL  +     + + F  +G
Sbjct:    66 ERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123

Query:   140 TVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
              ++ C +V      + Y FVH ++ +  +K I+++NGM+++ + + V    SR ++R   
Sbjct:   124 NILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR-KER--- 179

Query:   193 DEVVIGQKS 201
              E  +G K+
Sbjct:   180 -EAELGAKA 187


>TAIR|locus:2122009 [details] [associations]
            symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
            immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
            evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
            [GO:0009073 "aromatic amino acid family biosynthetic process"
            evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
            [GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
            "protein targeting to chloroplast" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
            conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
            stabilization" evidence=IMP] [GO:0006396 "RNA processing"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
            GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
            EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
            EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
            IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
            PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
            ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
            PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
            KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
            OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
            Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
            Uniprot:Q04836
        Length = 329

 Score = 172 (65.6 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 50/177 (28%), Positives = 90/177 (50%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+F+GN+    + + +  LFE+ G V   +V+ N        +GFV M + +E  TA+++
Sbjct:   151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210

Query:    89 LNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
              N   +N + L +  A  R     + P    P  +V+VGNL  +     + +LF  +G V
Sbjct:   211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 270

Query:   142 VECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
             VE  +V        R +GFV + D  ++N+ I  L+G  ++G+ ++V ++  R  +R
Sbjct:   271 VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRR 327


>POMBASE|SPAC57A7.04c [details] [associations]
            symbol:pabp "mRNA export shuttling protein"
            species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
            translational initiation" evidence=NAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006446 "regulation of translational initiation"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
            GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
            GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
            RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
            IntAct:P31209 STRING:P31209 PRIDE:P31209
            EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
            OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
        Length = 653

 Score = 178 (67.7 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 47/174 (27%), Positives = 79/174 (45%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
             P    +GT  +FI N++P    + +   F  +GK++ C V        K YGFVH ++ E
Sbjct:   160 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVE 219

Query:    81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
                 AI+ +NG ++N+K + +    SR+   +         T V++ NL       E  +
Sbjct:   220 SANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSD 279

Query:   134 LFVPYGTVVECDIV-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKV 179
             LF  +G +    +V       R +GFV+  + +   K + ELN     GK + V
Sbjct:   280 LFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYV 333

 Score = 170 (64.9 bits), Expect = 9.0e-12, P = 9.0e-12
 Identities = 52/196 (26%), Positives = 92/196 (46%)

Query:    13 SRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVV 68
             S  ++   N S    P  ++  +  +++G ++P  +  ++  LF   G V     C D V
Sbjct:    57 SESTSTPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAV 116

Query:    69 KN----YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP---TTKVFVGN 121
                   Y +V+  N E+G  A+ ELN  ++  +P +I    S++ P+     T  VF+ N
Sbjct:   117 TRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRI--MWSQRDPSLRKMGTGNVFIKN 174

Query:   122 LSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVD 173
             L        + + F  +G ++ C +        + YGFVH DS +  N  I+ +NGM+++
Sbjct:   175 LDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLN 234

Query:   174 GKPMKVQISTSRVRQR 189
              K + V    SR R+R
Sbjct:   235 DKKVYVGHHVSR-RER 249


>TAIR|locus:2012161 [details] [associations]
            symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
            evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
            biosynthetic process" evidence=RCA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
            EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
            RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
            UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
            SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
            ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
            GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
            OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
        Length = 671

 Score = 178 (67.7 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 50/177 (28%), Positives = 81/177 (45%)

Query:    19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
             ++  S R+ P     G   IFI N++     + +   F  +G ++ C V        K Y
Sbjct:   117 RVMYSVRD-PSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGY 175

Query:    72 GFVHMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNT 126
             GFV  + DE  + AI +LNG ++N+K     P   +      G     T V+V NLS++ 
Sbjct:   176 GFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESL 235

Query:   127 RAPEVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 175
                E+ ++F  +G    C I+R+       +GFV+ + S D  + +  LNG   D K
Sbjct:   236 SDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDK 292

 Score = 133 (51.9 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 40/186 (21%), Positives = 89/186 (47%)

Query:    29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDE 80
             G +  GT  +++G+++   +   +   F + G+VV   V ++        YG+V+    +
Sbjct:    38 GAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQ 97

Query:    81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 137
             +   A+ ELN   +N + +++    S + P+   +    +F+ NL  +     + E F  
Sbjct:    98 DASRALNELNFMALNGRAIRV--MYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSA 155

Query:   138 YGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQR 189
             +G ++ C +        + YGFV  D+ +  +  I +LNGM+++ K + V     ++++ 
Sbjct:   156 FGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRD 215

Query:   190 PGVDEV 195
             P  ++V
Sbjct:   216 PSGEKV 221

 Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
 Identities = 31/95 (32%), Positives = 52/95 (54%)

Query:    96 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN------ 149
             E+ LK EAA   +G N     ++V NL ++    ++RE F P+GT+  C ++R+      
Sbjct:   314 EQSLK-EAADKSQGSN-----LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSR 367

Query:   150 -YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQIS 182
               GFV   +P+   + I E+NG M+  KP+ V ++
Sbjct:   368 GSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402


>UNIPROTKB|D4A1U6 [details] [associations]
            symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1306891 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00200107 PRIDE:D4A1U6 Ensembl:ENSRNOT00000026636
            ArrayExpress:D4A1U6 Uniprot:D4A1U6
        Length = 566

 Score = 176 (67.0 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 54/160 (33%), Positives = 83/160 (51%)

Query:    37 KIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
             KIF+GNV+   T+ E +  LF  YG V+ C V+K + FVHM  +   R   +    ++  
Sbjct:     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGARH--RGPAWELRP 59

Query:    96 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI 155
              + L +E   SR  P   T K+FVGN+S    + E+R LF   G V+ECD+V+ + F  +
Sbjct:    60 GRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKGWAFGPL 116

Query:   156 D--SPDINK--CIKELNGMMVDGKPMKVQISTSRVRQRPG 191
             +  SP +    C+ EL  + V     +  +  SR  Q+ G
Sbjct:   117 EEQSPSLAPIACL-ELQRLGV----RQADVCISRKGQKKG 151

 Score = 132 (51.5 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 36/109 (33%), Positives = 55/109 (50%)

Query:    33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
             + T+KIF+GNV+   + + +R LFE+ G+V+ECDVVK + F  +E        I  L  Q
Sbjct:    73 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKGWAFGPLEEQSPSLAPIACLELQ 132

Query:    93 IVNEKPLKIEAATSRKGPNT-PTTKVFVGNLSDNTRAPEVRELFVPYGT 140
              +  +  + +   SRKG    P   +  G   D T+ P   +   P GT
Sbjct:   133 RLGVR--QADVCISRKGQKKGPALAIQSG---DKTKKPGAGDTAFP-GT 175


>UNIPROTKB|F1NH81 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
            EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
            Uniprot:F1NH81
        Length = 573

 Score = 176 (67.0 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 47/183 (25%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IFI N++     + +   F  +G ++ C VV      K YGFVH E  E 
Sbjct:    27 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 86

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  ++     ++EL
Sbjct:    87 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 146

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++       + +GFV  +   D  K + E+NG  ++GK + V  +  +V
Sbjct:   147 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 206

Query:   187 RQR 189
              ++
Sbjct:   207 ERQ 209


>UNIPROTKB|Q6DEY7 [details] [associations]
            symbol:epabp "Embryonic polyadenylate-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
            evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
            evidence=ISS] [GO:0043009 "chordate embryonic development"
            evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
            eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
            ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
            GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
            HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
            Uniprot:Q6DEY7
        Length = 629

 Score = 176 (67.0 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 47/185 (25%), Positives = 87/185 (47%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             PG    G   +FI N++     + +   F  +G ++ C VV      + YGFVH E  E 
Sbjct:    91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+ +NG ++N++ + +    SR+      G      T V++ N  ++     +RE+
Sbjct:   151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++       R +GFV+  +  +  K + E+NG  V+G+ + V  +  R+
Sbjct:   211 FSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI 270

Query:   187 RQRPG 191
              +R G
Sbjct:   271 -ERQG 274

 Score = 142 (55.0 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 35/168 (20%), Positives = 84/168 (50%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
             +++G+++P  +  ++   F   G ++   V ++        Y +++ +   +   A+  +
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72

Query:    90 NGQIVNEKPLKIEAATSRKG-PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
             N +++  +P++I  +    G   +    VF+ NL ++     + + F  +G ++ C +V 
Sbjct:    73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC 132

Query:   148 -----RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQR 189
                  R YGFVH ++ +  N+ I+ +NGM+++ + + V    SR R+R
Sbjct:   133 DEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSR-RER 179


>MGI|MGI:1349722 [details] [associations]
            symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008022 "protein C-terminus binding"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
            EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
            EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
            EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
            PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
            ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
            STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
            PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
            KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
            CleanEx:MM_PABPC1 Genevestigator:P29341
            GermOnline:ENSMUSG00000022283 Uniprot:P29341
        Length = 636

 Score = 176 (67.0 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 47/183 (25%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IFI N++     + +   F  +G ++ C VV      K YGFVH E  E 
Sbjct:    91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  ++     ++EL
Sbjct:   151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++       + +GFV  +   D  K + E+NG  ++GK + V  +  +V
Sbjct:   211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 36/176 (20%), Positives = 85/176 (48%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMEND 79
             P   S     +++G+++P  +  ++   F   G ++    C D++      Y +V+ +  
Sbjct:     3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
              +   A+  +N  ++  KP++I    S++ P+   +    +F+ NL  +     + + F 
Sbjct:    63 ADAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120

Query:   137 PYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSR 185
              +G ++ C +V      + YGFVH ++ +   + I+++NGM+++ + + V    SR
Sbjct:   121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176


>RGD|619838 [details] [associations]
            symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008022 "protein C-terminus binding"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
            RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
            ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
            MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
            Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
            UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
            Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
        Length = 636

 Score = 176 (67.0 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 47/183 (25%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IFI N++     + +   F  +G ++ C VV      K YGFVH E  E 
Sbjct:    91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  ++     ++EL
Sbjct:   151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++       + +GFV  +   D  K + E+NG  ++GK + V  +  +V
Sbjct:   211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 36/176 (20%), Positives = 85/176 (48%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMEND 79
             P   S     +++G+++P  +  ++   F   G ++    C D++      Y +V+ +  
Sbjct:     3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
              +   A+  +N  ++  KP++I    S++ P+   +    +F+ NL  +     + + F 
Sbjct:    63 ADAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120

Query:   137 PYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSR 185
              +G ++ C +V      + YGFVH ++ +   + I+++NGM+++ + + V    SR
Sbjct:   121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176


>UNIPROTKB|K7EQ02 [details] [associations]
            symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
            Ensembl:ENST00000592453 Uniprot:K7EQ02
        Length = 225

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 53/196 (27%), Positives = 97/196 (49%)

Query:    26 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTA 85
             N  G   +G  K+F+G ++  T+ E +R  F +YG+VV+C ++K+      ++   G   
Sbjct:     2 NNSGADEIG--KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDK--TTNQSRGFGFVK 57

Query:    86 IKELN--GQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
              K+ N  G ++  +P  ++   ++KGP   N+ + K+FVG +  N    E+RE F  +G 
Sbjct:    58 FKDPNCVGTVLASRPHTLDGR-NQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGV 116

Query:   141 VVECDIV--------RNYGFVHID---SPD--INKCIKELNGMMVDGKPMKVQISTSRVR 187
             V E  ++        R +GF+  +   S D  +N    ++ G  V+ K  + + S S+  
Sbjct:   117 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAP 176

Query:   188 QRPGVDEVVIGQKSVP 203
              +PG  +   G + VP
Sbjct:   177 GQPGASQW--GSRVVP 190


>TAIR|locus:2124261 [details] [associations]
            symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0009651
            "response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
            "translational initiation" evidence=ISS] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
            EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
            EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
            UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
            STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
            EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
            TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
            ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
            Uniprot:P42731
        Length = 629

 Score = 175 (66.7 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 50/190 (26%), Positives = 90/190 (47%)

Query:     7 QQLVKVSRYSNN-QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVEC 65
             Q+L  +  Y    ++  S R+ P     G   IFI N++     + +   F  +G +V C
Sbjct:    95 QELNYIPLYGKPIRVMYSHRD-PSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSC 153

Query:    66 DVV-------KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTP 113
              V        K YGFV   N+E  + AI++LNG ++N+K + +     R+        T 
Sbjct:   154 KVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTK 213

Query:   114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIK 165
              T V+V NL+++T   +++  F  YG +    ++++       +GFV+ ++ D   + ++
Sbjct:   214 FTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVE 273

Query:   166 ELNGMMVDGK 175
              LNG   D K
Sbjct:   274 SLNGHKFDDK 283

 Score = 135 (52.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 41/165 (24%), Positives = 81/165 (49%)

Query:    34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEGRTA 85
             G   +++G+++   +   +   F + G VV    C D+V      YG+V+  N ++   A
Sbjct:    34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93

Query:    86 IKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVV 142
             I+ELN   +  KP+++    S + P+   +    +F+ NL ++     + + F  +G +V
Sbjct:    94 IQELNYIPLYGKPIRV--MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIV 151

Query:   143 ECDIV-------RNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV 179
              C +        + YGFV + +     K I++LNGM+++ K + V
Sbjct:   152 SCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196


>ZFIN|ZDB-GENE-050308-1 [details] [associations]
            symbol:pabpc1b "poly A binding protein, cytoplasmic 1
            b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
            EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
            UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
            Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
            InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
        Length = 634

 Score = 175 (66.7 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 46/183 (25%), Positives = 86/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IFI N++     + +   F  +G ++ C VV      K YGFVH E  E 
Sbjct:    91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  ++    +++++
Sbjct:   151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDI 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  YG  +   ++       R +GFV  +   D  + + E+NG  ++GK + V  +  +V
Sbjct:   211 FSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273


>RGD|1311201 [details] [associations]
            symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
            IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
            MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
            KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
            NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
        Length = 643

 Score = 175 (66.7 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 46/183 (25%), Positives = 86/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IF+ N++     + +   F  +G ++ C VV      K YGFVH E  EE
Sbjct:    91 PSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEE 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG  +N++ + +    SR+      G      T V++ NL ++     +++L
Sbjct:   151 AERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDL 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++       + +GFV  +   D  K + E+NG  ++GK + V  +  +V
Sbjct:   211 FSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 135 (52.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 38/180 (21%), Positives = 87/180 (48%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEND 79
             P   S     +++G+++P  +  ++   F   G ++   V ++        Y  V+ +  
Sbjct:     3 PSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQL 62

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
             E+   A+  +N  ++  KP++I    S++ P+   +    +FV NL  +  +  + + F 
Sbjct:    63 EDAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFS 120

Query:   137 PYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV-QISTSRVRQ 188
              +G ++ C +V      + YGFVH ++ +   + I+++NGM ++ + + V +  + R RQ
Sbjct:   121 AFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQ 180

 Score = 128 (50.1 bits), Expect = 9.3e-06, P = 9.3e-06
 Identities = 34/116 (29%), Positives = 56/116 (48%)

Query:    81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 140
             E +T +K   GQ+  +KP KIE     +        ++V NL D      +R+ F P+GT
Sbjct:   271 ERQTELKHKFGQMKQDKP-KIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGT 329

Query:   141 VVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQR 189
             +    +       + +GFV   SP+   K + E+NG +V  KP+ V ++  R  +R
Sbjct:   330 ITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA-QRKEER 384


>UNIPROTKB|Q98SP8 [details] [associations]
            symbol:epabp-a "Embryonic polyadenylate-binding protein A"
            species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
            initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
            embryonic development" evidence=IEP] [GO:0043621 "protein
            self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
            HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
            RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
            SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
            Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
        Length = 629

 Score = 174 (66.3 bits), Expect = 3.2e-12, P = 3.2e-12
 Identities = 45/183 (24%), Positives = 86/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             PG    G   +FI N++     + +   F  +G ++ C VV      + YGFVH E  E 
Sbjct:    91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+ +NG ++N++ + +    SR+      G      T V++ N  ++     +RE+
Sbjct:   151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++       R +GFV+  +  +  K + E+NG  V+G+ + V  +  R+
Sbjct:   211 FSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 143 (55.4 bits), Expect = 8.8e-08, P = 8.8e-08
 Identities = 37/168 (22%), Positives = 85/168 (50%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVK----NYGFVHMENDEEGRTAIKEL 89
             ++IG+++P  +  ++   F   G ++    C D+      +Y +++ +   +   A+  +
Sbjct:    13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72

Query:    90 NGQIVNEKPLKIEAATSRKG-PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
             N +++  +P++I  +    G   +    VF+ NL ++     + + F  +G ++ C +V 
Sbjct:    73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC 132

Query:   148 -----RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQR 189
                  R YGFVH ++ +  N+ I+ +NGM+++ + + V    SR R+R
Sbjct:   133 DEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSR-RER 179


>UNIPROTKB|E7EQV3 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
            ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
            ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
        Length = 591

 Score = 173 (66.0 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 46/183 (25%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IFI N++     + +   F  +G ++ C VV      K YGFVH E  E 
Sbjct:    46 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 105

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  ++     +++L
Sbjct:   106 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 165

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++       + +GFV  +   D  K + E+NG  ++GK + V  +  +V
Sbjct:   166 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 225

Query:   187 RQR 189
              ++
Sbjct:   226 ERQ 228

 Score = 118 (46.6 bits), Expect = 0.00014, P = 0.00014
 Identities = 28/125 (22%), Positives = 64/125 (51%)

Query:    71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTR 127
             Y +V+ +   +   A+  +N  ++  KP++I    S++ P+   +    +F+ NL  +  
Sbjct:     9 YAYVNFQQPADAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSID 66

Query:   128 APEVRELFVPYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQ 180
                + + F  +G ++ C +V      + YGFVH ++ +   + I+++NGM+++ + + V 
Sbjct:    67 NKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 126

Query:   181 ISTSR 185
                SR
Sbjct:   127 RFKSR 131


>UNIPROTKB|E2RQC8 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
            ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
            NextBio:20898275 Uniprot:E2RQC8
        Length = 596

 Score = 173 (66.0 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 46/183 (25%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IFI N++     + +   F  +G ++ C VV      K YGFVH E  E 
Sbjct:    91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  ++     +++L
Sbjct:   151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++       + +GFV  +   D  K + E+NG  ++GK + V  +  +V
Sbjct:   211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 133 (51.9 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 36/176 (20%), Positives = 85/176 (48%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMEND 79
             P   S     +++G+++P  +  ++   F   G ++    C D++      Y +V+ +  
Sbjct:     3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
              +   A+  +N  ++  KP++I    S++ P+   +    +F+ NL  +     + + F 
Sbjct:    63 ADAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120

Query:   137 PYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSR 185
              +G ++ C +V      + YGFVH ++ +   + I+++NGM+++ + + V    SR
Sbjct:   121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176


>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
            symbol:pabpc1a "poly A binding protein,
            cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
            EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
            UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
            GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
            NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
        Length = 634

 Score = 173 (66.0 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 45/173 (26%), Positives = 81/173 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IFI N++     + +   F  +G ++ C VV      K YGFVH E  E 
Sbjct:    91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  ++    +++E+
Sbjct:   151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEI 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
             F  YG  +   ++       + +GFV  +   D  + + E+NG  ++GK + V
Sbjct:   211 FCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 263

 Score = 128 (50.1 bits), Expect = 9.2e-06, P = 9.2e-06
 Identities = 34/176 (19%), Positives = 84/176 (47%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEND 79
             P   S     +++G+++P  +  ++   F   G ++   V ++        Y +V+ +  
Sbjct:     3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQP 62

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
              +   A+  +N  ++  +P++I    S++ P+   +    +F+ NL  +     + + F 
Sbjct:    63 ADAERALDTMNFDVIKGRPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120

Query:   137 PYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSR 185
              +G ++ C +V      + YGFVH ++ +   + I+++NGM+++ + + V    SR
Sbjct:   121 AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176


>UNIPROTKB|P61286 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9913 "Bos taurus" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
            [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
            GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
            UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
            Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
        Length = 636

 Score = 173 (66.0 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 46/183 (25%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IFI N++     + +   F  +G ++ C VV      K YGFVH E  E 
Sbjct:    91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  ++     +++L
Sbjct:   151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++       + +GFV  +   D  K + E+NG  ++GK + V  +  +V
Sbjct:   211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 36/176 (20%), Positives = 85/176 (48%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMEND 79
             P   S     +++G+++P  +  ++   F   G ++    C D++      Y +V+ +  
Sbjct:     3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
              +   A+  +N  ++  KP++I    S++ P+   +    +F+ NL  +     + + F 
Sbjct:    63 ADAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120

Query:   137 PYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSR 185
              +G ++ C +V      + YGFVH ++ +   + I+++NGM+++ + + V    SR
Sbjct:   121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176


>UNIPROTKB|J9P326 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
            OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
            ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
            KEGG:cfa:612751 Uniprot:J9P326
        Length = 636

 Score = 173 (66.0 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 46/183 (25%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IFI N++     + +   F  +G ++ C VV      K YGFVH E  E 
Sbjct:    91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  ++     +++L
Sbjct:   151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++       + +GFV  +   D  K + E+NG  ++GK + V  +  +V
Sbjct:   211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 36/176 (20%), Positives = 85/176 (48%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMEND 79
             P   S     +++G+++P  +  ++   F   G ++    C D++      Y +V+ +  
Sbjct:     3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
              +   A+  +N  ++  KP++I    S++ P+   +    +F+ NL  +     + + F 
Sbjct:    63 ADAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120

Query:   137 PYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSR 185
              +G ++ C +V      + YGFVH ++ +   + I+++NGM+++ + + V    SR
Sbjct:   121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176


>UNIPROTKB|P11940 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
            [GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
            "cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
            evidence=TAS] [GO:0008494 "translation activator activity"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
            "ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
            regulation of nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
            stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=TAS] [GO:0000288
            "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0000289
            "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
            evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
            metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
            process" evidence=TAS] [GO:0044267 "cellular protein metabolic
            process" evidence=TAS] [GO:0045727 "positive regulation of
            translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
            Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
            Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
            GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
            eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
            Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
            PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
            PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
            CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
            EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
            EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
            EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
            IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
            RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
            PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
            PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
            PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
            PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
            SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
            STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
            PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
            KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
            HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
            PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
            BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
            EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
            PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
            Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
        Length = 636

 Score = 173 (66.0 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 46/183 (25%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IFI N++     + +   F  +G ++ C VV      K YGFVH E  E 
Sbjct:    91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  ++     +++L
Sbjct:   151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++       + +GFV  +   D  K + E+NG  ++GK + V  +  +V
Sbjct:   211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 36/176 (20%), Positives = 85/176 (48%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMEND 79
             P   S     +++G+++P  +  ++   F   G ++    C D++      Y +V+ +  
Sbjct:     3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
              +   A+  +N  ++  KP++I    S++ P+   +    +F+ NL  +     + + F 
Sbjct:    63 ADAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120

Query:   137 PYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSR 185
              +G ++ C +V      + YGFVH ++ +   + I+++NGM+++ + + V    SR
Sbjct:   121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176


>UNIPROTKB|F2Z557 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
            EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
            ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
            Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
            Uniprot:F2Z557
        Length = 636

 Score = 173 (66.0 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 46/183 (25%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IFI N++     + +   F  +G ++ C VV      K YGFVH E  E 
Sbjct:    91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  ++     +++L
Sbjct:   151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++       + +GFV  +   D  K + E+NG  ++GK + V  +  +V
Sbjct:   211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 36/176 (20%), Positives = 85/176 (48%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMEND 79
             P   S     +++G+++P  +  ++   F   G ++    C D++      Y +V+ +  
Sbjct:     3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
              +   A+  +N  ++  KP++I    S++ P+   +    +F+ NL  +     + + F 
Sbjct:    63 ADAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120

Query:   137 PYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSR 185
              +G ++ C +V      + YGFVH ++ +   + I+++NGM+++ + + V    SR
Sbjct:   121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176


>UNIPROTKB|Q5R8F7 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
            RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
            SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
            InParanoid:Q5R8F7 Uniprot:Q5R8F7
        Length = 636

 Score = 173 (66.0 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 46/183 (25%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IFI N++     + +   F  +G ++ C VV      K YGFVH E  E 
Sbjct:    91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  ++     +++L
Sbjct:   151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++       + +GFV  +   D  K + E+NG  ++GK + V  +  +V
Sbjct:   211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 36/176 (20%), Positives = 85/176 (48%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMEND 79
             P   S     +++G+++P  +  ++   F   G ++    C D++      Y +V+ +  
Sbjct:     3 PSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
              +   A+  +N  ++  KP++I    S++ P+   +    +F+ NL  +     + + F 
Sbjct:    63 ADAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120

Query:   137 PYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSR 185
              +G ++ C +V      + YGFVH ++ +   + I+++NGM+++ + + V    SR
Sbjct:   121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176


>UNIPROTKB|I3LS00 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
            mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
            GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
            GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
            Uniprot:I3LS00
        Length = 647

 Score = 173 (66.0 bits), Expect = 4.2e-12, P = 4.2e-12
 Identities = 46/183 (25%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IFI N++     + +   F  +G ++ C VV      K YGFVH E  E 
Sbjct:    91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G      T V++ N  ++     +++L
Sbjct:   151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++       + +GFV  +   D  K + E+NG  ++GK + V  +  +V
Sbjct:   211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 36/176 (20%), Positives = 85/176 (48%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMEND 79
             P   S     +++G+++P  +  ++   F   G ++    C D++      Y +V+ +  
Sbjct:     3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
              +   A+  +N  ++  KP++I    S++ P+   +    +F+ NL  +     + + F 
Sbjct:    63 ADAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120

Query:   137 PYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSR 185
              +G ++ C +V      + YGFVH ++ +   + I+++NGM+++ + + V    SR
Sbjct:   121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176


>RGD|1310759 [details] [associations]
            symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
            RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
            GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
            OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
        Length = 630

 Score = 172 (65.6 bits), Expect = 5.2e-12, P = 5.2e-12
 Identities = 48/180 (26%), Positives = 83/180 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   +FI N+N     + +   F  +G ++ C VV      K +GFVH E +E 
Sbjct:    91 PSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGSKGHGFVHFETEEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+++NG ++N++ + +    SRK      G  T   T V++ N  D      +  L
Sbjct:   151 AERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGL 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G V+   ++       + +GFV  +   D  K + E+NG  ++GK + V  +  +V
Sbjct:   211 FGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKV 270

 Score = 128 (50.1 bits), Expect = 9.1e-06, P = 9.1e-06
 Identities = 35/170 (20%), Positives = 84/170 (49%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVEC----DVVKN----YGFVHMENDEEGRTAIKEL 89
             +++G+++P  +  ++   F   G ++      DV+      Y  V+ E   +   A+  +
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72

Query:    90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
             N  ++  KP++I    S++ P+   +    VF+ NL+       + + F  +G ++ C +
Sbjct:    73 NFDVIKGKPVRI--MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKV 130

Query:   147 V------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKV-QISTSRVRQ 188
             V      + +GFVH ++ +   + I+++NGM+++ + + V Q  + + R+
Sbjct:   131 VCDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKERE 180


>UNIPROTKB|H0Y5F5 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000421687 Uniprot:H0Y5F5
        Length = 550

 Score = 171 (65.3 bits), Expect = 5.3e-12, P = 5.3e-12
 Identities = 45/173 (26%), Positives = 83/173 (47%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
             +FI N++     + +   F  +G ++ C VV      K Y FVH E  E    AI+++NG
Sbjct:     3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 62

Query:    92 QIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
              ++N++ + +    SRK      G      T V++ N  +      ++ELF  +G  +  
Sbjct:    63 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 122

Query:   145 DIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
              ++R+       +GFV  +   D NK ++E+NG  + GK + V  +  +V ++
Sbjct:   123 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 175


>UNIPROTKB|Q6GR16 [details] [associations]
            symbol:epabp-b "Embryonic polyadenylate-binding protein B"
            species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
            "eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
            "chordate embryonic development" evidence=ISS] [GO:0043621 "protein
            self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
            RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
            SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
            Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
        Length = 629

 Score = 171 (65.3 bits), Expect = 6.7e-12, P = 6.7e-12
 Identities = 46/185 (24%), Positives = 87/185 (47%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             PG    G   +FI N++     + +   F  +G ++ C VV      + YGFVH E  E 
Sbjct:    91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+ +NG ++N++ + +    SR+      G      T V++ N  ++     ++E+
Sbjct:   151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEI 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++       R +GFV+  +  +  K + E+NG  V+G+ + V  +  R+
Sbjct:   211 FSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRI 270

Query:   187 RQRPG 191
              +R G
Sbjct:   271 -ERQG 274

 Score = 146 (56.5 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 37/168 (22%), Positives = 84/168 (50%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
             ++IG+++P  +  ++   F   G ++   V ++        Y +++ +   +   A+  +
Sbjct:    13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72

Query:    90 NGQIVNEKPLKIEAATSRKG-PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
             N +++  +P++I  +    G   +    VF+ NL D+     + + F  +G ++ C +V 
Sbjct:    73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVC 132

Query:   148 -----RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQR 189
                  R YGFVH ++ +  N+ I+ +NGM+++ + + V    SR R+R
Sbjct:   133 DEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSR-RER 179


>UNIPROTKB|Q6IP09 [details] [associations]
            symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
            species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
            "eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
            "protein self-association" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
            GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
            UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
            GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
            Uniprot:Q6IP09
        Length = 633

 Score = 171 (65.3 bits), Expect = 6.7e-12, P = 6.7e-12
 Identities = 47/183 (25%), Positives = 83/183 (45%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IFI N++     + +   F  +G ++ C VV      K YGFVH E  E 
Sbjct:    91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI ++NG ++N++ + +    SRK      G      T V++ N  ++     ++E 
Sbjct:   151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEW 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  YG  +   ++       R +GFV  +   D  K + ++NG  ++GK + V  +  +V
Sbjct:   211 FGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 131 (51.2 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 36/176 (20%), Positives = 84/176 (47%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMEND 79
             P   S     +++G+++P  +  ++   F   G ++    C D++      Y +V+ +  
Sbjct:     3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
              +   A+  +N  ++  KP++I    S++ P+   +    +F+ NL  +     + + F 
Sbjct:    63 ADAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120

Query:   137 PYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSR 185
              +G ++ C +V      + YGFVH ++ +   + I ++NGM+++ + + V    SR
Sbjct:   121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176


>FB|FBgn0035016 [details] [associations]
            symbol:CG4612 species:7227 "Drosophila melanogaster"
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
            GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
            RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
            IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
            EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
            KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
            InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
            NextBio:806022 Uniprot:Q9W158
        Length = 307

 Score = 163 (62.4 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 47/185 (25%), Positives = 89/185 (48%)

Query:    29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEE 81
             G SS  + KI+I N+      + +   F  +G ++ C+V K+       YGFVH +++E 
Sbjct:   106 GNSSPDSGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEA 165

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRKGPN----TPTTKVFVGNLSDNTRAPEVRELFVP 137
              R AI+++NG + N + + +     R+       T    ++V NLS+      +RE+F P
Sbjct:   166 ARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEP 225

Query:   138 YGTVVECDIV-------RNYGFVHIDSPDIN-KCIKELNGMMV-DGKPMKVQISTSRVRQ 188
             YG +    ++       R +GFV  ++P      +  L+G  + D K + V  + S+  +
Sbjct:   226 YGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAER 285

Query:   189 RPGVD 193
             +  ++
Sbjct:   286 QQEIN 290


>UNIPROTKB|F1SDR6 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
            EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
        Length = 608

 Score = 168 (64.2 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 45/183 (24%), Positives = 87/183 (47%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             PG    G   +FI N+      + +   F  +G ++ C VV      + +GFVH E  E 
Sbjct:    91 PGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNT-PTTKVFVGNLSDNTRAPEVREL 134
              + AI+ +NG ++N++ + +    SR+      G      T ++V NL  +     +++L
Sbjct:   151 AQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDL 210

Query:   135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G ++   ++R+       +GFV+ +   D  K + ++NG  V G+ + V  +  RV
Sbjct:   211 FSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 134 (52.2 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 36/168 (21%), Positives = 82/168 (48%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEGRTAIKEL 89
             +++G+++P  +  ++   F   G ++    C DV       Y +++ +   +   A+  +
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72

Query:    90 NGQIVNEKPLKIEAATSRKG-PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
             N +++  +P++I  +    G   +    VF+ NL D+     + + F  +G ++ C +V 
Sbjct:    73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132

Query:   148 -----RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQR 189
                  R +GFVH ++ +     I+ +NGM+++ + + V    SR R+R
Sbjct:   133 DDHGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSR-RER 179


>TAIR|locus:2040625 [details] [associations]
            symbol:PAB7 "poly(A) binding protein 7" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
            UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
            SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
            GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
            OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
            Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
        Length = 609

 Score = 168 (64.2 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 45/164 (27%), Positives = 75/164 (45%)

Query:    34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAI 86
             G   +F+ N+    +  +++ +F+K+G +V C V        + YGFV  E ++    AI
Sbjct:   110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAI 169

Query:    87 KELNGQIVNEKPL---KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
             + LN  IV +K +   K    T R  P    T +++ NL  +     +RE F  +G +V 
Sbjct:   170 QTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVS 229

Query:   144 CDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
               I        R Y FV+ D+P D  +  + +NG     K + V
Sbjct:   230 LAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYV 273

 Score = 129 (50.5 bits), Expect = 6.6e-06, P = 6.6e-06
 Identities = 39/179 (21%), Positives = 82/179 (45%)

Query:    29 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDE 80
             G SS  T  +++G+++P  +  ++   F ++  +    + K+        YG+ +  + +
Sbjct:    17 GSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQ 76

Query:    81 EGRTAIKELNGQIVNEKPLKIE-AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
             +   AI++ N  ++N K +++  +  +          VFV NL ++     ++++F  +G
Sbjct:    77 DANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFG 136

Query:   140 TVVECDIV-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPM---KVQISTSRVR 187
              +V C +        R YGFV  +  D  +  I+ LN  +V  K +   K    T RV+
Sbjct:   137 NIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVK 195

 Score = 90 (36.7 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
             +++ N++   S +L+R  F ++GK+V   + K+       Y FV+ +N E+ R A + +N
Sbjct:   203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262

Query:    91 GQIVNEKPLKIEAATSR 107
             G     K L +  A  +
Sbjct:   263 GTKFGSKCLYVGRAQKK 279

 Score = 73 (30.8 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
 Identities = 21/79 (26%), Positives = 38/79 (48%)

Query:   115 TKVFVGNLSDNTRAPEVRELFVPYGTVVE----CDIV---RNYGFVHIDSPD-INKCIKE 166
             + ++V N++      E+R+ F   GT+      CD     + +GFV   +P+     +K 
Sbjct:   304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363

Query:   167 LNGMMVDGKPMKVQISTSR 185
              +G M  GKP+ V I+  +
Sbjct:   364 FHGQMFHGKPLYVAIAQKK 382


>FB|FBgn0039730 [details] [associations]
            symbol:CG7903 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 EMBL:AY071654 ProteinModelPortal:Q8SYB8
            SMR:Q8SYB8 PaxDb:Q8SYB8 PRIDE:Q8SYB8 FlyBase:FBgn0039730
            eggNOG:NOG315296 InParanoid:Q8SYB8 OrthoDB:EOG4HDR9C
            ArrayExpress:Q8SYB8 Bgee:Q8SYB8 Uniprot:Q8SYB8
        Length = 384

 Score = 164 (62.8 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 33/76 (43%), Positives = 45/76 (59%)

Query:    35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
             T K+F+G++ P    E +R LF  YG VVECDV+    FVH+EN +    AI  LNG I 
Sbjct:     4 TAKVFVGSL-PRCKPEELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNGTIF 62

Query:    95 NEKPLKIEAATSRKGP 110
               +P+ +EA   + GP
Sbjct:    63 KGQPIVVEAGRPKYGP 78

 Score = 147 (56.8 bits), Expect = 7.5e-09, P = 7.5e-09
 Identities = 34/82 (41%), Positives = 50/82 (60%)

Query:   111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKC-IKELNG 169
             NT T KVFVG+L    +  E+R LF  YG+VVECD++    FVH+++ D+ +  I  LNG
Sbjct:     2 NT-TAKVFVGSLP-RCKPEELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNG 59

Query:   170 MMVDGKPMKVQISTSRVRQRPG 191
              +  G+P+ V+    R +  PG
Sbjct:    60 TIFKGQPIVVE--AGRPKYGPG 79


>UNIPROTKB|H3BPI5 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
            Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
        Length = 255

 Score = 158 (60.7 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 40/180 (22%), Positives = 93/180 (51%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVV----KNYGFVHMEND 79
             P   S  T  +++G+++P  +  ++   F   G ++    C D++     NY +V+ ++ 
Sbjct:     3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
             ++   A+  +N  ++  KP++I    S++ P+   +    +FV NL  +     + +   
Sbjct:    63 KDAEHALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS 120

Query:   137 PYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKV-QISTSRVRQ 188
              +G ++ C++V      + YGFVH ++ +   + IK++NGM+++G+ + V Q  + + R+
Sbjct:   121 AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKERE 180

 Score = 146 (56.5 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 40/163 (24%), Positives = 73/163 (44%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IF+ N++   + + +      +G ++ C+VV      K YGFVH E  E 
Sbjct:    91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AIK++NG ++N + + +    SRK      G        V++ N  ++     +++L
Sbjct:   151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNG 169
             F  +G  +   ++       + +GFV  +   D  K + E+NG
Sbjct:   211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253


>TAIR|locus:2157702 [details] [associations]
            symbol:CP31B "chloroplast RNA-binding protein 31B"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
            evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
            "response to cold" evidence=RCA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
            evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
            eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
            ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
            EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
            ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
            PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
            KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
            PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
        Length = 289

 Score = 160 (61.4 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 48/176 (27%), Positives = 85/176 (48%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+F+GN+      + +  LFE+ G V   +V+ N        +GFV M   EE   A+++
Sbjct:   114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173

Query:    89 LNGQIVNEKPLKIEAATSR--KGPNTPTT-----KVFVGNLSDNTRAPEVRELFVPYGTV 141
              N   VN + L +  A  R  +    P       +++VGNL  +  +  +  LF  +G V
Sbjct:   174 FNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKV 233

Query:   142 VECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
             V+  +V        R +GFV + +  ++N  I  L+G  ++G+ +KV ++  R R+
Sbjct:   234 VDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289

 Score = 108 (43.1 bits), Expect = 0.00068, P = 0.00068
 Identities = 26/80 (32%), Positives = 42/80 (52%)

Query:    36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
             F+I++GN+        +  LF ++GKVV+  VV        + +GFV M N+ E   AI 
Sbjct:   207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIA 266

Query:    88 ELNGQIVNEKPLKIEAATSR 107
              L+GQ +  + +K+  A  R
Sbjct:   267 ALDGQNLEGRAIKVNVAEER 286


>UNIPROTKB|E1BWJ7 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
            EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
            RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
            Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
            OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
        Length = 632

 Score = 166 (63.5 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 43/183 (23%), Positives = 86/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             PG    G   +FI N++     + +   F  +G ++ C VV      + +GFVH E  E 
Sbjct:    91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AI+ +NG ++N++ + +    SRK      G      T V++ N  D+     +RE+
Sbjct:   151 ATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREI 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++       + +GFV+ +   +  K + ++NG  ++G+ + V  +  R+
Sbjct:   211 FSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRL 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 34/164 (20%), Positives = 80/164 (48%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEGRTAIKEL 89
             +++G+++P  +  ++   F   G ++    C DV       Y +++ +   +   A+  +
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72

Query:    90 NGQIVNEKPLKIEAATSRKG-PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
             N +++  +P++I  +    G   +    VF+ NL D+     + + F  +G ++ C +V 
Sbjct:    73 NFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVC 132

Query:   148 -----RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSR 185
                  R +GFVH ++ +   + I+ +NGM+++ + + V    SR
Sbjct:   133 DENGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSR 176

 Score = 112 (44.5 bits), Expect = 0.00079, P = 0.00079
 Identities = 27/98 (27%), Positives = 47/98 (47%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
             +++ N++ G   E +R  F  YG +    V+      K +GFV   + EE   A+ E+NG
Sbjct:   296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355

Query:    92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 129
             +IV+ KPL +  A  ++      T  ++  L+     P
Sbjct:   356 RIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRALP 393


>UNIPROTKB|H3BNY3 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
            HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
            Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
        Length = 347

 Score = 161 (61.7 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 44/183 (24%), Positives = 84/183 (45%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IF+ N++   + + +      +G ++ C+VV      K YGFVH E  E 
Sbjct:    91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AIK++NG ++N + + +    SRK      G        V++ N  ++     +++L
Sbjct:   151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++       + +GFV  +   D  K + E+NG  ++GK + V  +  +V
Sbjct:   211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 158 (60.7 bits), Expect = 5.3e-11, P = 5.3e-11
 Identities = 40/180 (22%), Positives = 93/180 (51%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVV----KNYGFVHMEND 79
             P   S  T  +++G+++P  +  ++   F   G ++    C D++     NY +V+ ++ 
Sbjct:     3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
             ++   A+  +N  ++  KP++I    S++ P+   +    +FV NL  +     + +   
Sbjct:    63 KDAEHALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS 120

Query:   137 PYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKV-QISTSRVRQ 188
              +G ++ C++V      + YGFVH ++ +   + IK++NGM+++G+ + V Q  + + R+
Sbjct:   121 AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKERE 180


>TAIR|locus:2058573 [details] [associations]
            symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0046686
            "response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
            GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
            EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
            UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
            STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
            EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
            TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
            ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
        Length = 662

 Score = 166 (63.5 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 45/177 (25%), Positives = 86/177 (48%)

Query:    19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
             +I  S R+     S G   +F+ N++     + +   F   G +V C V        + Y
Sbjct:   118 RITYSSRDSSARRS-GVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGY 176

Query:    72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-----TKVFVGNLSDNT 126
             GFV  + ++  + AI++LNG+++N+K + +     ++   +       T V+V NLS+ T
Sbjct:   177 GFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEAT 236

Query:   127 RAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 175
                E++  F  YG++    ++R+       +GFV+ ++P D  + ++ LNG   D K
Sbjct:   237 TDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDK 293

 Score = 130 (50.8 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 41/159 (25%), Positives = 76/159 (47%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEGRTAIKEL 89
             +++G+++   +   +   F +  +VV    C D   N    YG+V+  N ++   A+++L
Sbjct:    48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107

Query:    90 NGQIVNEKPLKIE-AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
             N   +N K ++I  ++       +    +FV NL  +     + E F   GT+V C +  
Sbjct:   108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVAT 167

Query:   148 ------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 179
                   R YGFV  D+ D  K  I++LNG +++ K + V
Sbjct:   168 DHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206

 Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
 Identities = 28/98 (28%), Positives = 50/98 (51%)

Query:   100 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGF 152
             + E  +S  G       ++V NL D     ++RELF  +GT+  C ++R+        GF
Sbjct:   313 RYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGF 372

Query:   153 VHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
             V   +  + ++ + E+NG MV GKP+ V ++  +  +R
Sbjct:   373 VAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERR 410


>UNIPROTKB|E1BNB4 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
            EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
            Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
        Length = 618

 Score = 163 (62.4 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 45/183 (24%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             PG    G   IFI N+      + +   F  +G ++ C VV      + +GFVH E  E 
Sbjct:    91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
              + AI  +NG ++N++ + +    SR+      G      T ++V NL  +     +++L
Sbjct:   151 AQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDL 210

Query:   135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G ++   ++R+       +GFV+ +   +  K +  +NG  V G+ + V  +  RV
Sbjct:   211 FSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 134 (52.2 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 38/181 (20%), Positives = 88/181 (48%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEGRTAIKEL 89
             +++G+++P  +  ++   F   G ++    C DV       Y +++ +   +   A+  +
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72

Query:    90 NGQIVNEKPLKIEAATSRKG-PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
             N +++  +P++I  +    G   +    +F+ NL D+     + + F  +G ++ C +V 
Sbjct:    73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132

Query:   148 -----RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKS 201
                  R +GFVH ++ +     I  +NGM+++ + + V    SR R+R    EV +G ++
Sbjct:   133 DEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSR-RER----EVELGARA 187

Query:   202 V 202
             +
Sbjct:   188 M 188


>UNIPROTKB|Q9H361 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
            process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
            eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
            EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
            PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
            IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
            PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
            GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
            GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
            PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
            PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
            NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
            Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
        Length = 631

 Score = 161 (61.7 bits), Expect = 7.9e-11, P = 7.9e-11
 Identities = 44/183 (24%), Positives = 84/183 (45%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             P     G   IF+ N++   + + +      +G ++ C+VV      K YGFVH E  E 
Sbjct:    91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
                AIK++NG ++N + + +    SRK      G        V++ N  ++     +++L
Sbjct:   151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210

Query:   135 FVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G  +   ++       + +GFV  +   D  K + E+NG  ++GK + V  +  +V
Sbjct:   211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 40/180 (22%), Positives = 93/180 (51%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVV----KNYGFVHMEND 79
             P   S  T  +++G+++P  +  ++   F   G ++    C D++     NY +V+ ++ 
Sbjct:     3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 136
             ++   A+  +N  ++  KP++I    S++ P+   +    +FV NL  +     + +   
Sbjct:    63 KDAEHALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS 120

Query:   137 PYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKV-QISTSRVRQ 188
              +G ++ C++V      + YGFVH ++ +   + IK++NGM+++G+ + V Q  + + R+
Sbjct:   121 AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKERE 180


>RGD|1559517 [details] [associations]
            symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
            CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
            UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
            KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
        Length = 370

 Score = 157 (60.3 bits), Expect = 8.0e-11, P = 8.0e-11
 Identities = 46/194 (23%), Positives = 91/194 (46%)

Query:    34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
             G   +FI N++     + +   F  +GK++   V+      K YGFVH ++      AI+
Sbjct:    96 GIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGSKGYGFVHYQDQRAADRAIE 155

Query:    88 ELNGQIVNEKPLKIEAATSRKGPNT-----PT--TKVFVGNLSDNTRAPEVRELFVPYGT 140
             E+NG+++ +  L +    SRK         P   T V++ N  D+     +R +F  YG 
Sbjct:   156 EMNGKLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQ 215

Query:   141 VVECDIVRN-------YGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
              +   ++++       +GFV  DS    K  ++++NG  ++G+ + V  +  +V ++  +
Sbjct:   216 TLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAEL 275

Query:   193 DEVVIGQKSVPVQA 206
              E+    K   ++A
Sbjct:   276 KEMFEQMKKERIRA 289


>TAIR|locus:2079502 [details] [associations]
            symbol:RS31 "arginine/serine-rich splicing factor 31"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
            [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IDA;RCA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0030422 "production of siRNA involved in RNA interference"
            evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=RCA] [GO:0043687 "post-translational
            protein modification" evidence=RCA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0005681 "spliceosomal complex" evidence=TAS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0016607
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
            EMBL:AL138642 HOGENOM:HOG000276234 KO:K12893 EMBL:X99435
            EMBL:AF439831 EMBL:AY125565 IPI:IPI00530595 PIR:T47978 PIR:T51304
            RefSeq:NP_567120.1 UniGene:At.24231 ProteinModelPortal:P92964
            SMR:P92964 IntAct:P92964 STRING:P92964 PaxDb:P92964 PRIDE:P92964
            EnsemblPlants:AT3G61860.1 GeneID:825359 KEGG:ath:AT3G61860
            TAIR:At3g61860 eggNOG:NOG277933 InParanoid:P92964 OMA:FEYETRQ
            PhylomeDB:P92964 ProtClustDB:CLSN2917489 Genevestigator:P92964
            GermOnline:AT3G61860 Uniprot:P92964
        Length = 264

 Score = 152 (58.6 bits), Expect = 9.9e-11, P = 9.9e-11
 Identities = 44/142 (30%), Positives = 69/142 (48%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKEL-NGQIVNE 96
             +F+GN    T    +  LF+KYG+V   D+   Y FV+ E++ +   AI++L N     E
Sbjct:     4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYE 63

Query:    97 KP-LKIEAATSRKG--------PNT--PTTKVFVGNLSD-NTRAPEVRELFVPYGTVVEC 144
             K  L +E A   +G        P+   PT  +FV N     T+  ++ + F PYG V   
Sbjct:    64 KRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNV 123

Query:   145 DIVRNYGFVHIDSP-DINKCIK 165
              I RN+ FV  ++  D  K ++
Sbjct:   124 RIRRNFSFVQFETQEDATKALE 145


>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
            symbol:PFL1170w "polyadenylate-binding protein,
            putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
            ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
            MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
            KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
            ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
        Length = 875

 Score = 162 (62.1 bits), Expect = 9.9e-11, P = 9.9e-11
 Identities = 46/166 (27%), Positives = 79/166 (47%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
             P     GT  IF+ N++     + +   F  +G ++ C V        K+YGFVH E++E
Sbjct:    96 PSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEE 155

Query:    81 EGRTAIKELNGQIVNEKPLKIEA--ATSRKGPN-TPTTKVFVGNLSDNTRAPEVRELFVP 137
               + AI+++NG  +  K + +      S +  N T  T ++V N  D+     +R+LF P
Sbjct:   156 SAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNP 215

Query:   138 YGTV----VECDIV-RNYGFV-HIDSPDINKCIKELNGMMV--DGK 175
             YG +    V+ D   R + F+ + D+      +  LNG  +  DG+
Sbjct:   216 YGEITSMIVKMDNKNRKFCFINYADAESAKNAMDNLNGKKITDDGQ 261

 Score = 120 (47.3 bits), Expect = 0.00013, P = 0.00013
 Identities = 48/182 (26%), Positives = 80/182 (43%)

Query:    16 SNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVH 75
             SNN IN++  N    ++ G       N N G+S+       +      +C    N  +V 
Sbjct:   365 SNNSINLNENN----NTAGNNNSTNNNNNSGSSMNNAGSAKKDETAASDCADTPNILYVG 420

Query:    76 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
                    R AI  L  +  N   L +E     +G N     +++ NL D      +RELF
Sbjct:   421 PHQSRARRHAI--LKAKFDN---LNVENKNKHQGVN-----LYIKNLDDGIDDIMLRELF 470

Query:   136 VPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVR 187
              P+GT+    ++R+       +GFV   S +  NK + E++  +++GKP+ V ++  R  
Sbjct:   471 EPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKR-E 529

Query:   188 QR 189
             QR
Sbjct:   530 QR 531


>UNIPROTKB|Q8I5H4 [details] [associations]
            symbol:PFL1170w "Polyadenylate-binding protein, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
            "poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
            ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
            MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
            KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
            ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
        Length = 875

 Score = 162 (62.1 bits), Expect = 9.9e-11, P = 9.9e-11
 Identities = 46/166 (27%), Positives = 79/166 (47%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
             P     GT  IF+ N++     + +   F  +G ++ C V        K+YGFVH E++E
Sbjct:    96 PSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEE 155

Query:    81 EGRTAIKELNGQIVNEKPLKIEA--ATSRKGPN-TPTTKVFVGNLSDNTRAPEVRELFVP 137
               + AI+++NG  +  K + +      S +  N T  T ++V N  D+     +R+LF P
Sbjct:   156 SAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNP 215

Query:   138 YGTV----VECDIV-RNYGFV-HIDSPDINKCIKELNGMMV--DGK 175
             YG +    V+ D   R + F+ + D+      +  LNG  +  DG+
Sbjct:   216 YGEITSMIVKMDNKNRKFCFINYADAESAKNAMDNLNGKKITDDGQ 261

 Score = 120 (47.3 bits), Expect = 0.00013, P = 0.00013
 Identities = 48/182 (26%), Positives = 80/182 (43%)

Query:    16 SNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVH 75
             SNN IN++  N    ++ G       N N G+S+       +      +C    N  +V 
Sbjct:   365 SNNSINLNENN----NTAGNNNSTNNNNNSGSSMNNAGSAKKDETAASDCADTPNILYVG 420

Query:    76 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 135
                    R AI  L  +  N   L +E     +G N     +++ NL D      +RELF
Sbjct:   421 PHQSRARRHAI--LKAKFDN---LNVENKNKHQGVN-----LYIKNLDDGIDDIMLRELF 470

Query:   136 VPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVR 187
              P+GT+    ++R+       +GFV   S +  NK + E++  +++GKP+ V ++  R  
Sbjct:   471 EPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKR-E 529

Query:   188 QR 189
             QR
Sbjct:   530 QR 531


>CGD|CAL0001392 [details] [associations]
            symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
            evidence=IEA] [GO:0006446 "regulation of translational initiation"
            evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
            poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
            GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
            RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
            SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
            KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
        Length = 629

 Score = 160 (61.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 48/202 (23%), Positives = 95/202 (47%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
             P     G   IFI N++P    + +   F  +GK++ C V        K +GFVH E  E
Sbjct:   132 PSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAE 191

Query:    81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
                 AI+ +NG ++N++ + +    S+K   +         T ++V N+  N       +
Sbjct:   192 AAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEK 251

Query:   134 LFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSR 185
             LF P+G +    + ++       +GFV+  D     K ++ELN   ++G+  K+ +  ++
Sbjct:   252 LFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQ--KIYVGRAQ 309

Query:   186 VRQRPGVDEVVIGQKSVPVQAL 207
              ++R  ++E+    ++V ++ L
Sbjct:   310 -KKRERLEELKKQYEAVRLEKL 330

 Score = 125 (49.1 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 37/161 (22%), Positives = 77/161 (47%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEGRTAIKEL 89
             +++G +NP  +   +  +F   G+V     C D V      Y +V+    E+G  AI+EL
Sbjct:    54 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEEL 113

Query:    90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
             N   +  +P +I    S++ P+   +    +F+ NL        + + F  +G ++ C +
Sbjct:   114 NYNPIEGRPCRI--MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKV 171

Query:   147 VRN-------YGFVHIDSPDINKC-IKELNGMMVDGKPMKV 179
               +       +GFVH ++ +  +  I+ +NGM+++ + + V
Sbjct:   172 ATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV 212

 Score = 118 (46.6 bits), Expect = 0.00015, P = 0.00015
 Identities = 49/220 (22%), Positives = 99/220 (45%)

Query:     2 SRFDQQQLVKVSRYSNN-QINISCRNMPG-FSSVGTF-KIFIGNVNPGTSVELIRPLFEK 58
             S+F++ +    + Y  N  +N S  +    FS  G    I++     G S       FE 
Sbjct:   223 SKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFED 282

Query:    59 YGKVVEC-----DVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP 113
             +   V+      D   N   +++   ++ R  ++EL  Q    + +++E     +G N  
Sbjct:   283 HESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQY---EAVRLEKLAKYQGVN-- 337

Query:   114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIK 165
                +FV NL D   + ++ E F P+GT+    ++       + +GFV   +P+   K I 
Sbjct:   338 ---LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAIT 394

Query:   166 ELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKSVPVQ 205
             E+N  M++GKP+ V ++  +  +R  +++ +  +  + +Q
Sbjct:   395 EMNTRMINGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQ 434


>WB|WBGene00003902 [details] [associations]
            symbol:pab-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0040010 "positive regulation of growth
            rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
            evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
            "receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
            evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
            "P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
            body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
            GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
            GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
            GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
            NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
            ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
            MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
            EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
            EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
            EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
            WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
            ArrayExpress:Q9U302 Uniprot:Q9U302
        Length = 646

 Score = 160 (61.4 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 43/175 (24%), Positives = 81/175 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
             P     G   IFI N++     + I   F  +G ++ C V        K YGFVH E +E
Sbjct:   112 PAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEE 171

Query:    81 EGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPT--TKVFVGNLSDNTRAPEVRE 133
               + AI+++NG ++  K + +      A  +R+   T    T V+V N  D+     + +
Sbjct:   172 AAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEK 231

Query:   134 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQI 181
             LF  +G +  C+++      + +GFV   +P+     ++ L+   ++G  +K+ +
Sbjct:   232 LFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286

 Score = 126 (49.4 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 37/174 (21%), Positives = 82/174 (47%)

Query:    25 RNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHM 76
             +N  G SS     +++G+++P  +  ++   F   G V+   V ++        Y +V+ 
Sbjct:    22 QNQTG-SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNF 80

Query:    77 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRE 133
             +   +   A+  +N + ++ KP++I    S++ P    +    +F+ NL        + +
Sbjct:    81 QQPADAERAMDTMNFEALHGKPMRI--MWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYD 138

Query:   134 LFVPYGTVVECDIV-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKV 179
              F  +G ++ C +        + YGFVH ++ +     I+++NGM++ GK + V
Sbjct:   139 TFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192

 Score = 101 (40.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
 Identities = 21/77 (27%), Positives = 38/77 (49%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELNG 91
             +++ N     + E +  LF K+G +  C+V+      K +GFV   N EE  TA++ L+ 
Sbjct:   215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 274

Query:    92 QIVNEKPLKIEAATSRK 108
               +    LK+    ++K
Sbjct:   275 STIEGTDLKLHVCRAQK 291

 Score = 75 (31.5 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
 Identities = 19/81 (23%), Positives = 38/81 (46%)

Query:   117 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELN 168
             ++V NL +      +++ F  YG +    ++       + +GFV  + P+     + E+N
Sbjct:   319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMN 378

Query:   169 GMMVDGKPMKVQISTSRVRQR 189
               MV  KP+ V I+  +  +R
Sbjct:   379 SKMVCSKPLYVAIAQRKEDRR 399


>UNIPROTKB|H0YCC8 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000474378 Uniprot:H0YCC8
        Length = 197

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 40/145 (27%), Positives = 71/145 (48%)

Query:    62 VVECDV--VKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTP 113
             +V CD    K Y FVH E  E    AI+++NG ++N++ + +    SRK      G    
Sbjct:    42 IVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK 101

Query:   114 T-TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCI 164
               T V++ N  +      ++ELF  +G  +   ++R+       +GFV  +   D NK +
Sbjct:   102 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 161

Query:   165 KELNGMMVDGKPMKVQISTSRVRQR 189
             +E+NG  + GK + V  +  +V ++
Sbjct:   162 EEMNGKEISGKIIFVGRAQKKVERQ 186


>UNIPROTKB|E2RND1 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
            EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
        Length = 644

 Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 45/183 (24%), Positives = 85/183 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             PG    G   IFI N+      + +   F  +G ++ C VV      + +GFVH E  E 
Sbjct:    91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTRAPEVREL 134
              + AI  +NG ++N++ + +    SR+      G      T ++V NL  +     +++L
Sbjct:   151 AQQAITTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDL 210

Query:   135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G ++   ++R+       +GFV+     +  K + ++NG  V G+ + V  +  RV
Sbjct:   211 FSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 137 (53.3 bits), Expect = 6.5e-07, P = 6.5e-07
 Identities = 41/191 (21%), Positives = 92/191 (48%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMEND 79
             PGF       +++G+++P  +  ++   F   G ++    C DV       Y +++ +  
Sbjct:     6 PGFPLAS---LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKG-PNTPTTKVFVGNLSDNTRAPEVRELFVPY 138
              +   A+  +N +++  +P++I  +    G   +    +F+ NL D+     + + F  +
Sbjct:    63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122

Query:   139 GTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQRPG 191
             G ++ C +V      R +GFVH ++ +   + I  +NGM+++ + + V    SR R+R  
Sbjct:   123 GNILSCKVVCDDHGSRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSR-RER-- 179

Query:   192 VDEVVIGQKSV 202
               EV +G +++
Sbjct:   180 --EVELGARAM 188


>DICTYBASE|DDB_G0274523 [details] [associations]
            symbol:DDB_G0274523 "RNA recognition motif-containing
            protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
            RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
            EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
            InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
        Length = 904

 Score = 160 (61.4 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 51/185 (27%), Positives = 90/185 (48%)

Query:    16 SNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN----- 70
             +NN  N S  N           +F+ ++    + E +  LF KYGKV+   V+ +     
Sbjct:    89 NNNNNNNSVNNKELELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNS 148

Query:    71 --YGFVHMENDEEGRTAIKELNG-QIVNEKPL-KIEAATSRKGPNTPTTKVFVGNLSDNT 126
               YGFV   + +E   AI+EL+G Q  N+K L ++    +      P+  +F+  L  + 
Sbjct:   149 YGYGFVRFSSPQESAAAIEELDGYQYQNKKLLCRLSNLYTNLNSKYPSNNLFIKPLPYDV 208

Query:   127 RAPEVRELFVPYGTVVECDIVRNY-------GFVHIDSP-DINKCIKELNGMMVD---GK 175
                ++R+LF P+G ++EC ++ ++       GFV   S  D +K I  +NG+ ++   G 
Sbjct:   209 TDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGY 268

Query:   176 PMKVQ 180
             P+ V+
Sbjct:   269 PLVVK 273


>UNIPROTKB|Q4VY17 [details] [associations]
            symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
            IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
            Ensembl:ENST00000537323 Uniprot:Q4VY17
        Length = 330

 Score = 152 (58.6 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 43/183 (23%), Positives = 83/183 (45%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             PG    G   IFI N+      + +   F  +G ++ C V       + +GFVH E  E 
Sbjct:    91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNT-PTTKVFVGNLSDNTRAPEVREL 134
              + AI  +NG ++N++ + +    SR+      G      T ++V NL  +     +++L
Sbjct:   151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDL 210

Query:   135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G ++   ++R+       +GFV+ +   +  K +  +NG  V G+ +    +  RV
Sbjct:   211 FSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 124 (48.7 bits), Expect = 9.8e-06, P = 9.8e-06
 Identities = 34/168 (20%), Positives = 81/168 (48%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEGRTAIKEL 89
             +++G+++P  +  ++   F   G ++    C DV       Y +++ +   +   A+  +
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72

Query:    90 NGQIVNEKPLKIEAATSRKG-PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
             N +++  +P++I  +    G   +    +F+ NL D+     + + F  +G ++ C +  
Sbjct:    73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132

Query:   148 -----RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQR 189
                  R +GFVH ++ +   + I  +NGM+++ + + V    SR R+R
Sbjct:   133 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR-RER 179


>UNIPROTKB|Q96DU9 [details] [associations]
            symbol:PABPC5 "Polyadenylate-binding protein 5"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
            EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
            PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
            ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
            PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
            DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
            UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
            HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
            PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
            GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
            CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
            Uniprot:Q96DU9
        Length = 382

 Score = 152 (58.6 bits), Expect = 3.0e-10, P = 3.0e-10
 Identities = 45/177 (25%), Positives = 80/177 (45%)

Query:    34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
             G   IFI N++       +  LF  +G ++ C VV      K Y +VH ++      AI 
Sbjct:   104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIW 163

Query:    88 ELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
              +NG  +N + + +         AA  R       T VFV N+ D+    +++ELF  YG
Sbjct:   164 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYG 223

Query:   140 TVVECDIVRN-------YGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQ 188
                   ++R+       +GFV  ++ +   K + +L+G  +DGK + V  +  ++ +
Sbjct:   224 PTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280

 Score = 113 (44.8 bits), Expect = 0.00028, P = 0.00028
 Identities = 31/158 (19%), Positives = 74/158 (46%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYG-----KVVECDVVKN---YGFVHMENDEEGRTAIKEL 89
             +++G+++P  + +++   F   G     ++    V ++   YG+V+     +   A+  +
Sbjct:    20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79

Query:    90 NGQIVNEKPLKIE-AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
             N  ++N KP ++  +    +   +    +F+ NL  +     +  LF  +G ++ C +V 
Sbjct:    80 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC 139

Query:   148 -----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
                  + Y +VH DS    N+ I  +NG+ ++ + + V
Sbjct:   140 DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177


>UNIPROTKB|I3LMT3 [details] [associations]
            symbol:RBM14 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0030374 "ligand-dependent
            nuclear receptor transcription coactivator activity" evidence=IEA]
            [GO:0016575 "histone deacetylation" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003676 GO:GO:0005667 GO:GO:0030374
            GO:GO:0016575 GeneTree:ENSGT00390000020883 OMA:SLTSYGA
            Ensembl:ENSSSCT00000026592 Uniprot:I3LMT3
        Length = 520

 Score = 154 (59.3 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 31/66 (46%), Positives = 45/66 (68%)

Query:    47 TSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 106
             TS EL R LFE+ G+V+ECD + +Y FVHME + + + AI +LNG+ V  K + +E +T 
Sbjct:     5 TSQEL-RSLFERRGRVIECDFLSDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 63

Query:   107 --RKGP 110
               +KGP
Sbjct:    64 GQKKGP 69

 Score = 130 (50.8 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 28/73 (38%), Positives = 43/73 (58%)

Query:   130 EVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQ 188
             E+R LF   G V+ECD + +Y FVH++   D    I +LNG  V GK + V++ST   ++
Sbjct:     8 ELRSLFERRGRVIECDFLSDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 67

Query:   189 RPGVDEVVIGQKS 201
              PG+  +  G K+
Sbjct:    68 GPGL-AIQSGDKT 79


>TAIR|locus:2199700 [details] [associations]
            symbol:PAB3 "poly(A) binding protein 3" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0006397
            "mRNA processing" evidence=IGI] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
            EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
            RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
            SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
            GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
            OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
            Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
        Length = 660

 Score = 155 (59.6 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 47/174 (27%), Positives = 83/174 (47%)

Query:    19 QINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNY 71
             +I +S R+ P     G   IFI N++     + +   F  +G ++ C V        K Y
Sbjct:   120 RIMLSNRD-PSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGY 178

Query:    72 GFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR----KGPNTPT---TKVFVGNLSD 124
             GFV  E +E  + AI +LNG ++N+K + +     R    +  NTPT   T V+V NL  
Sbjct:   179 GFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPK 238

Query:   125 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGM 170
                  E+R+ F  +G +    ++R+       +GFV+ +  +     ++++NG+
Sbjct:   239 EIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGI 292

 Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
 Identities = 36/160 (22%), Positives = 76/160 (47%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
             ++ G+++P  +   +  LF+    VV   V ++       Y +++  N  +   A++ LN
Sbjct:    51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110

Query:    91 GQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 147
                + ++P++I    S + P+T  +    +F+ NL  +     + E F  +GT++ C + 
Sbjct:   111 YTPLFDRPIRI--MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVA 168

Query:   148 -------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
                    + YGFV  +  +     I +LNGM+++ K + V
Sbjct:   169 MDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208

 Score = 92 (37.4 bits), Expect = 0.00093, Sum P(2) = 0.00092
 Identities = 22/98 (22%), Positives = 47/98 (47%)

Query:   100 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGF 152
             K E     +   +    +++ NL D+    +++E+F  YG V    ++       R +GF
Sbjct:   317 KFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGF 376

Query:   153 VHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQR 189
             V   +P+   + + E+NG M+  KP+ + ++  +  +R
Sbjct:   377 VAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRR 414

 Score = 61 (26.5 bits), Expect = 0.00093, Sum P(2) = 0.00092
 Identities = 16/77 (20%), Positives = 38/77 (49%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
             +++ N+      + +R  F K+G +    V+++       +GFV+ E  E   +A++++N
Sbjct:   231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290

Query:    91 GQIVNEKPLKIEAATSR 107
             G  + +  L +  A  +
Sbjct:   291 GISLGDDVLYVGRAQKK 307


>ASPGD|ASPL0000010999 [details] [associations]
            symbol:fabM species:162425 "Emericella nidulans"
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
            GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
            EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
            STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
            GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
            Uniprot:Q5B630
        Length = 732

 Score = 154 (59.3 bits), Expect = 5.6e-10, P = 5.6e-10
 Identities = 44/177 (24%), Positives = 84/177 (47%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEGRTAIKEL 89
             +++G ++P  +  ++  LF   G+V     C D V      Y +V+  +   G  A+ EL
Sbjct:    44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103

Query:    90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
             N  ++  KP +I    S++ P    T    VF+ NL        + + F  +G ++ C +
Sbjct:   104 NYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 161

Query:   147 VRN-------YGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEV 195
              ++       YGFVH ++ +  N  IK +NGM+++ K + V    S+  ++   +E+
Sbjct:   162 AQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEM 218

 Score = 149 (57.5 bits), Expect = 9.5e-09, P = 9.5e-09
 Identities = 41/174 (23%), Positives = 75/174 (43%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
             P     G   +FI N++     + +   F  +G ++ C V        K YGFVH E  E
Sbjct:   122 PALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAE 181

Query:    81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
                 AIK +NG ++N+K + +    S+K   +         T +++ N+       E R+
Sbjct:   182 AANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRK 241

Query:   134 LFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 179
             LF  +G +    + R+       +GFV+  + +     ++E+N   V  + + V
Sbjct:   242 LFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYV 295

 Score = 94 (38.1 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELN 90
             I+I N++P    E  R LFEK+G++    + ++       +GFV+    E  + A++E+N
Sbjct:   225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284

Query:    91 GQIVNEKPLKIEAATSR 107
              + V  + L +  A  +
Sbjct:   285 DKEVRSQKLYVGRAQKK 301

 Score = 90 (36.7 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query:   102 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD 159
             EAA   K        ++V NL+D+    ++RELF PYGT+    ++R+   V   +P+
Sbjct:   313 EAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPE 370

 Score = 80 (33.2 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
 Identities = 17/59 (28%), Positives = 34/59 (57%)

Query:   148 RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKSVPVQ 205
             + +GFV   SPD  +K + E+N  MV+GKP+ V ++  +  +R  ++  +  + ++  Q
Sbjct:   417 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIRQQ 475


>ZFIN|ZDB-GENE-080204-91 [details] [associations]
            symbol:rbm15b "RNA binding motif protein 15B"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-080204-91 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00530000063730 EMBL:CU856621
            IPI:IPI00931594 Ensembl:ENSDART00000136125 Bgee:E9QBX7
            Uniprot:E9QBX7
        Length = 630

 Score = 153 (58.9 bits), Expect = 5.7e-10, P = 5.7e-10
 Identities = 45/166 (27%), Positives = 83/166 (50%)

Query:    35 TFKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTA 85
             T  +FIGN++   T VEL R  F+KYG ++E  V+K         Y F+  +N +    A
Sbjct:   268 TRNLFIGNLDHNITEVEL-RQGFDKYG-IIEEVVIKRPARGQGGAYAFLKFQNLDMAHRA 325

Query:    86 IKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
                + G+++N  P+KI       G   PTT+++VG L  NT    +   F  +G++   D
Sbjct:   326 KVAMQGRMINGNPIKIGY-----GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTID 380

Query:   146 IVR--NYGFVHIDSPDINKCI-KELNGMMVDGKPMKVQISTSRVRQ 188
              V+  N+ ++H +S D  +    ++ G  + G   ++++  ++  +
Sbjct:   381 YVKGDNFAYIHYESLDAAQAACAQMRGFPLGGPSRRLRVDFAKAEE 426


>SGD|S000000967 [details] [associations]
            symbol:PAB1 "Poly(A) binding protein" species:4932
            "Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
            evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
            stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0006446 "regulation of translational
            initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
            "transport" evidence=IEA] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
            poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
            GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
            GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
            GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
            EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
            PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
            DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
            PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
            KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
            NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
            Uniprot:P04147
        Length = 577

 Score = 152 (58.6 bits), Expect = 6.4e-10, P = 6.4e-10
 Identities = 42/174 (24%), Positives = 81/174 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
             P     G+  IFI N++P    + +   F  +G ++   +        K +GFVH E + 
Sbjct:   118 PSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEG 177

Query:    81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRE 133
               + AI  LNG ++N + + +    SRK  ++         T ++V N++  T   + +E
Sbjct:   178 AAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQE 237

Query:   134 LFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
             LF  +G +V   +       ++ +GFV+ +   D  K ++ LN   ++G+ + V
Sbjct:   238 LFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV 291

 Score = 115 (45.5 bits), Expect = 0.00031, P = 0.00031
 Identities = 40/176 (22%), Positives = 80/176 (45%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
             +++G++ P  S   +  +F   G V    V ++        Y +V+  + E GR AI++L
Sbjct:    40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99

Query:    90 NGQIVNEKPLKIEAATSRKGPNTP---TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
             N   +  +  +I    S++ P+     +  +F+ NL  +     + + F  +G ++   I
Sbjct:   100 NYTPIKGRLCRI--MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKI 157

Query:   147 V-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
                     + +GFVH +     K  I  LNGM+++G+ + V    SR  +   ++E
Sbjct:   158 ATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEE 213

 Score = 111 (44.1 bits), Expect = 0.00091, P = 0.00091
 Identities = 39/142 (27%), Positives = 63/142 (44%)

Query:    56 FEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT 115
             +EK+   V+     N   ++ E    GR   K     ++ ++    EA    K       
Sbjct:   266 YEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQ---YEAYRLEKMAKYQGV 322

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKEL 167
              +FV NL D+    ++ E F PYGT+    ++R        +GFV   +P+   K I E 
Sbjct:   323 NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEK 382

Query:   168 NGMMVDGKPMKVQISTSR-VRQ 188
             N  +V GKP+ V I+  + VR+
Sbjct:   383 NQQIVAGKPLYVAIAQRKDVRR 404


>UNIPROTKB|Q4VXU2 [details] [associations]
            symbol:PABPC1L "Polyadenylate-binding protein 1-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
            HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
            UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
            IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
            PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
            Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
            GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
            PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
            GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
            CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
        Length = 614

 Score = 152 (58.6 bits), Expect = 7.0e-10, P = 7.0e-10
 Identities = 43/183 (23%), Positives = 83/183 (45%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEE 81
             PG    G   IFI N+      + +   F  +G ++ C V       + +GFVH E  E 
Sbjct:    91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRK------GPNT-PTTKVFVGNLSDNTRAPEVREL 134
              + AI  +NG ++N++ + +    SR+      G      T ++V NL  +     +++L
Sbjct:   151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDL 210

Query:   135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G ++   ++R+       +GFV+ +   +  K +  +NG  V G+ +    +  RV
Sbjct:   211 FSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRV 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 124 (48.7 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 34/168 (20%), Positives = 81/168 (48%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEGRTAIKEL 89
             +++G+++P  +  ++   F   G ++    C DV       Y +++ +   +   A+  +
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72

Query:    90 NGQIVNEKPLKIEAATSRKG-PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
             N +++  +P++I  +    G   +    +F+ NL D+     + + F  +G ++ C +  
Sbjct:    73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132

Query:   148 -----RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQR 189
                  R +GFVH ++ +   + I  +NGM+++ + + V    SR R+R
Sbjct:   133 DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR-RER 179


>UNIPROTKB|E1BT73 [details] [associations]
            symbol:RALY "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00390000006718 EMBL:AADN02019478 EMBL:AADN02019479
            EMBL:AADN02019480 IPI:IPI00577610 ProteinModelPortal:E1BT73
            Ensembl:ENSGALT00000003194 Uniprot:E1BT73
        Length = 179

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 34/94 (36%), Positives = 51/94 (54%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             NI+ +N P   S+ + ++FIGN+N     +  +  +F KYG+VV C V K Y FV   N+
Sbjct:     9 NITNKNDP--KSINS-RVFIGNLNTAVVKKSDVETIFSKYGRVVGCSVHKGYAFVQYSNE 65

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP 113
                R A+   NG+++  + L I  A   K PN P
Sbjct:    66 RHARAAVLGENGRVLAGQTLDINMAGEPK-PNRP 98

 Score = 103 (41.3 bits), Expect = 0.00070, P = 0.00070
 Identities = 24/96 (25%), Positives = 48/96 (50%)

Query:    99 LKIEAA--TSRKGPNTPTTKVFVGNLSDNT-RAPEVRELFVPYGTVVECDIVRNYGFVHI 155
             LK++ +  T++  P +  ++VF+GNL+    +  +V  +F  YG VV C + + Y FV  
Sbjct:     3 LKVQTSNITNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVVGCSVHKGYAFVQY 62

Query:   156 DSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRP 190
              +       +   NG ++ G+ + + ++      RP
Sbjct:    63 SNERHARAAVLGENGRVLAGQTLDINMAGEPKPNRP 98


>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
            symbol:tia1l "cytotoxic granule-associated RNA
            binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
            OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
            EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
            SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
            CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
        Length = 342

 Score = 150 (57.9 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 41/166 (24%), Positives = 78/166 (46%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVEC----DVVKN--YGFVHMENDEEGRTAIKELNG 91
             +++GN++   +  LI  +F + G    C    D   N  Y FV    +     A+  +NG
Sbjct:    11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYCFVEFYENRHAAAALAAMNG 70

Query:    92 QIVNEKPLKIEAATSRKGPNTPTTK---VFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
             + +  K +K+  A++       T+    VFVG+LS      +VR  F P+G + +  +V+
Sbjct:    71 RKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVK 130

Query:   149 N--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
             +        YGF+  I+  D    I+++NG  + G+ ++   +T +
Sbjct:   131 DLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRK 176

 Score = 117 (46.2 bits), Expect = 7.8e-05, P = 7.8e-05
 Identities = 34/117 (29%), Positives = 58/117 (49%)

Query:    36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK 87
             F +F+G+++P  S + +R  F  +GK+ +  VVK+        YGF+   N  +  +AI+
Sbjct:    97 FHVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQ 156

Query:    88 ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
             ++NGQ +  + ++   AT RK P+ P +    G  S +    EV     P    V C
Sbjct:   157 QMNGQWLGGRQIRTNWAT-RK-PSAPKSNN-EGASSKHLSYEEVLNQSSPSNCTVYC 210


>ZFIN|ZDB-GENE-030131-7336 [details] [associations]
            symbol:srsf5a "serine/arginine-rich splicing
            factor 5a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-7336 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
            HOGENOM:HOG000276234 KO:K12893 OMA:FEDSRNH EMBL:FP103009
            EMBL:AY398417 IPI:IPI00503585 RefSeq:NP_957161.1 UniGene:Dr.76029
            STRING:Q6TGT9 Ensembl:ENSDART00000043312 GeneID:335396
            KEGG:dre:335396 CTD:335396 InParanoid:Q6TGT9 OrthoDB:EOG461459
            NextBio:20810825 Uniprot:Q6TGT9
        Length = 259

 Score = 113 (44.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 22/73 (30%), Positives = 42/73 (57%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             ++FIG ++P      +   F+ YG++ E ++   +GFV  ++  +   A+ ELNG+ +  
Sbjct:     5 RVFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDYRDADDAVYELNGKELCS 64

Query:    97 KPLKIEAATSRKG 109
             + + IE A SR+G
Sbjct:    65 ERVTIEHARSRRG 77

 Score = 106 (42.4 bits), Expect = 0.00094, P = 0.00094
 Identities = 25/77 (32%), Positives = 42/77 (54%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 174
             +VF+G LS + R  +V + F  YG + E ++   +GFV  D   D +  + ELNG  +  
Sbjct:     5 RVFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDYRDADDAVYELNGKELCS 64

Query:   175 KPMKVQISTSRVRQRPG 191
             + + ++ + SR R R G
Sbjct:    65 ERVTIEHARSR-RGRGG 80

 Score = 80 (33.2 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 27/89 (30%), Positives = 42/89 (47%)

Query:   106 SRKGPNTPTT-KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR---NYGFVHIDS-PDI 160
             SR GP   T  ++ V NLS      ++++L    G V   D  R   N G V   S  D+
Sbjct:   103 SRYGPPVRTEHRIIVENLSSRISWQDLKDLMRKVGEVTFVDAHRTKKNEGVVEFASHSDM 162

Query:   161 NKCIKELNGMMVDGKPMKVQISTSRVRQR 189
                I++L+G  ++G+ +K+     R R R
Sbjct:   163 KNAIEKLDGTDLNGRKLKLYEDRKRNRSR 191


>UNIPROTKB|F1N4Q4 [details] [associations]
            symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
            CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
            RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
            Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
            NextBio:20869865 Uniprot:F1N4Q4
        Length = 382

 Score = 148 (57.2 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 45/177 (25%), Positives = 79/177 (44%)

Query:    34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
             G   IFI N++       +  LF  +G ++ C VV      K Y +VH ++      AI 
Sbjct:   104 GIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAIW 163

Query:    88 ELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
              +NG  +N + + +         AA  R       T VFV N  D+    +++ELF  YG
Sbjct:   164 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYG 223

Query:   140 TVVECDIVRN-------YGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQ 188
                   ++R+       +GFV  ++ +   K + +L+G  +DGK + V  +  ++ +
Sbjct:   224 PTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280

 Score = 113 (44.8 bits), Expect = 0.00028, P = 0.00028
 Identities = 31/158 (19%), Positives = 75/158 (47%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYG-----KVVECDVVKN---YGFVHMENDEEGRTAIKEL 89
             +++G+++P  + +++   F   G     ++    V ++   YG+V+     +   A+  +
Sbjct:    20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79

Query:    90 NGQIVNEKPLKIE-AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
             N  ++N KP ++  +    +   +    +F+ NL  +     +  LF  +G+++ C +V 
Sbjct:    80 NFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVC 139

Query:   148 -----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
                  + Y +VH DS    N+ I  +NG+ ++ + + V
Sbjct:   140 DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177


>UNIPROTKB|J9P972 [details] [associations]
            symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
            Ensembl:ENSCAFT00000049246 Uniprot:J9P972
        Length = 258

 Score = 145 (56.1 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 45/174 (25%), Positives = 87/174 (50%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELN--GQIV 94
             K+F+G ++  T+ E +R  F +YG+VV+C ++K+      ++   G    K+ N  G ++
Sbjct:    56 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDK--TTNQSRGFGFVKFKDPNCVGTVL 113

Query:    95 NEKPLKIEAAT---SRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
               +P  ++       +KGP   N+ + K+FVG +  N    E+RE F  +G V E  ++ 
Sbjct:   114 ASRPHTLDGRNIDPKQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIY 173

Query:   148 -------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSR--VRQRPG 191
                    R +GF+   D   +++ +  ++   + GK ++V+ +  R    Q PG
Sbjct:   174 DAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKSQAPG 226


>RGD|2322083 [details] [associations]
            symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
            CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
            UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
            KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
        Length = 382

 Score = 147 (56.8 bits), Expect = 7.5e-09, P = 7.5e-09
 Identities = 45/177 (25%), Positives = 79/177 (44%)

Query:    34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
             G   IFI N++       +  LF  +G ++ C VV      K Y +VH ++      AI 
Sbjct:   104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIW 163

Query:    88 ELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
              +NG  +N + + +         AA  R       T VFV N  D+    ++++LF  YG
Sbjct:   164 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYG 223

Query:   140 TVVECDIVRN-------YGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQ 188
                   ++R+       +GFV  ++ +   K + EL+G  +DGK + V  +  ++ +
Sbjct:   224 PTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIER 280

 Score = 110 (43.8 bits), Expect = 0.00065, P = 0.00065
 Identities = 31/158 (19%), Positives = 73/158 (46%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYG-----KVVECDVVKN---YGFVHMENDEEGRTAIKEL 89
             +++G+++P  + +++   F   G     ++    V ++   YG+V+     +   A+  +
Sbjct:    20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79

Query:    90 NGQIVNEKPLKIE-AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
             N  ++N KP ++  +        +    +F+ NL  +     +  LF  +G ++ C +V 
Sbjct:    80 NFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC 139

Query:   148 -----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
                  + Y +VH DS    N+ I  +NG+ ++ + + V
Sbjct:   140 DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177


>WB|WBGene00012904 [details] [associations]
            symbol:tiar-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
            HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
            ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
            EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
            UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
            NextBio:886000 Uniprot:Q9U2F5
        Length = 434

 Score = 147 (56.8 bits), Expect = 9.6e-09, P = 9.6e-09
 Identities = 44/170 (25%), Positives = 80/170 (47%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-----YGFVHMENDEEGRTAIKELNGQ 92
             +F+ N++P  + E +  LF + G V++  ++       Y FV   +  +   A++  NG+
Sbjct:    42 LFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDPYAFVEFSDHNQATLALQSHNGR 101

Query:    93 IVNEKPLKIEAATSRKGP----NTPTTK----VFVGNLSDNTRAPEVRELFVPYGTVVEC 144
              + EK + +  A   + P    + P T     VFVG+L     + ++RE FV +G V E 
Sbjct:   102 ELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEA 161

Query:   145 DIVRN--------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSR 185
              I+R+        YGFV      D  + I E+NG  +  + ++   +T +
Sbjct:   162 KIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRK 211


>WB|WBGene00015943 [details] [associations]
            symbol:tiar-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
            "morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0010171 "body morphogenesis"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
            GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
            GO:GO:0003676 EMBL:FO080599 HSSP:P11940
            GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
            GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
            NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
            SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
            EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
            OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
        Length = 408

 Score = 144 (55.7 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 42/176 (23%), Positives = 87/176 (49%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV---KN--YGFVHMENDEEGRTAIKELNGQ 92
             +++GN++   + + I  LF + G V +  V+    N  Y FV   +  +   A++ +N +
Sbjct:    48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFSDHGQASQALQTMNKR 107

Query:    93 IVNEKPLKIEAATS--RKGPNTPTTK---VFVGNLSDNTRAPEVRELFVPYGTVVECDIV 147
             ++ ++ +K+  A    ++     TT+   VFVG+LS      ++RE F P+G V +  ++
Sbjct:   108 LLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVI 167

Query:   148 RN--------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDE 194
             R+        YGFV      +  + I+++NG  +  + ++   +T    ++PG  E
Sbjct:   168 RDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWAT----RKPGDQE 219

 Score = 103 (41.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 23/82 (28%), Positives = 42/82 (51%)

Query:    36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
             F +F+G+++     + +R  F+ +G V +  V+        K YGFV     EE   AI+
Sbjct:   135 FHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIE 194

Query:    88 ELNGQIVNEKPLKIEAATSRKG 109
             ++NGQ +  + ++   AT + G
Sbjct:   195 QMNGQWLGRRTIRTNWATRKPG 216

 Score = 91 (37.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 31/101 (30%), Positives = 47/101 (46%)

Query:    95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI--VRNYGF 152
             NEK    E      G NT    V+VGN++  T   E+R+ F  +G + E  I  ++ Y F
Sbjct:   225 NEKSYD-EIYNQTSGDNT---SVYVGNIASLTE-DEIRQGFASFGRITEVRIFKMQGYAF 279

Query:   153 VHIDSPDIN-KCIKELNGMMVDGKPMKVQIS-TSRVRQRPG 191
             V  D+ D   K I ++N   V G+ ++     T    + PG
Sbjct:   280 VKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTPG 320


>UNIPROTKB|D4A7H4 [details] [associations]
            symbol:Tia1 "Protein Tia1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00214634 ProteinModelPortal:D4A7H4
            Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
        Length = 281

 Score = 144 (55.7 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 38/166 (22%), Positives = 76/166 (45%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEEGRTAIKELNG 91
             +++GN++   +  LI  LF + G    C ++ +      Y FV          A+  +NG
Sbjct:     5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 64

Query:    92 QIVNEKPLKIEAATSRKGPNTPTTK---VFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
             + +  K +K+  AT+       T+    VFVG+LS      +++  F P+G + +  +V+
Sbjct:    65 RKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK 124

Query:   149 N--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
             +        YGFV   +  D    I+++ G  + G+ ++   +T +
Sbjct:   125 DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 170


>UNIPROTKB|C9JTN7 [details] [associations]
            symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
            EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
            ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
            Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
            Uniprot:C9JTN7
        Length = 285

 Score = 144 (55.7 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 38/166 (22%), Positives = 76/166 (45%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEEGRTAIKELNG 91
             +++GN++   +  LI  LF + G    C ++ +      Y FV          A+  +NG
Sbjct:     9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 68

Query:    92 QIVNEKPLKIEAATSRKGPNTPTTK---VFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
             + +  K +K+  AT+       T+    VFVG+LS      +++  F P+G + +  +V+
Sbjct:    69 RKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK 128

Query:   149 N--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
             +        YGFV   +  D    I+++ G  + G+ ++   +T +
Sbjct:   129 DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174


>UNIPROTKB|F1MS42 [details] [associations]
            symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
            "polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
            EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
            Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
        Length = 342

 Score = 145 (56.1 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 55/183 (30%), Positives = 89/183 (48%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+FIG ++  T+ E +R  F ++G+V EC V+++        +GFV    D+ G   +  
Sbjct:     1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM-DQAGVDKVLA 59

Query:    89 LNGQIVNEKPLKIEAATSRKG-PN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
              +   ++ K +  + A  R+  P   T T K+FVG LS NT   +V++ F  +G V +  
Sbjct:    60 QSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAM 119

Query:   146 IV--------RNYGFVHIDSPDINK--C---IKELNGMMVDGK---PMKVQISTSRVRQR 189
             ++        R +GFV  +S DI +  C     E+N  MV+ K   P +V   T   R R
Sbjct:   120 LMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGR 179

Query:   190 PGV 192
               V
Sbjct:   180 SRV 182


>ZFIN|ZDB-GENE-040718-354 [details] [associations]
            symbol:srsf5b "serine/arginine-rich splicing factor
            5b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040718-354 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
            HOGENOM:HOG000276234 KO:K12893 OMA:RKSYTRS EMBL:AL928866
            EMBL:BC075982 IPI:IPI00512023 RefSeq:NP_001002610.1
            UniGene:Dr.80489 STRING:Q6DHJ0 Ensembl:ENSDART00000023580
            GeneID:436883 KEGG:dre:436883 CTD:436883 InParanoid:Q6DHJ0
            NextBio:20831311 Uniprot:Q6DHJ0
        Length = 285

 Score = 118 (46.6 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 26/77 (33%), Positives = 42/77 (54%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 174
             ++F+G L+ + R  +V   F  YG + + D+ R +GFV  D P D    + EL+G  +  
Sbjct:     5 RIFIGRLNPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKELCN 64

Query:   175 KPMKVQISTSRVRQRPG 191
             +  +V I  +RVR R G
Sbjct:    65 E--RVTIEHARVRLRGG 79

 Score = 113 (44.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
 Identities = 23/72 (31%), Positives = 43/72 (59%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIVN 95
             +IFIG +NP    + +   F+ YG++ + D+ + +GFV  ++  +   A+ EL+G ++ N
Sbjct:     5 RIFIGRLNPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKELCN 64

Query:    96 EKPLKIEAATSR 107
             E+ + IE A  R
Sbjct:    65 ER-VTIEHARVR 75

 Score = 72 (30.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
 Identities = 24/90 (26%), Positives = 43/90 (47%)

Query:   106 SRKGPNTPTT--KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR---NYGFVHIDS-PD 159
             SR+ P    T  ++ V NLS      ++++     G V   D  R   N G V   S  D
Sbjct:    99 SRRNPPPMRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPNLNEGVVEFASHSD 158

Query:   160 INKCIKELNGMMVDGKPMKVQISTSRVRQR 189
             +   +++L+G  ++G+ +K+ +  SR + R
Sbjct:   159 LKNALEKLSGKEINGRKIKL-VEASRKKSR 187


>RGD|1305937 [details] [associations]
            symbol:Rbm15b "RNA binding motif protein 15B" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
            evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
            [GO:0005730 "nucleolus" evidence=ISO] [GO:0006913
            "nucleocytoplasmic transport" evidence=ISO] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1305937 GO:GO:0005654 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473954 InterPro:IPR012921
            Pfam:PF07744 GO:GO:0000381 PROSITE:PS50917 Gene3D:2.40.290.10
            InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
            OrthoDB:EOG42RD6Z GeneTree:ENSGT00530000063730 IPI:IPI00768794
            Ensembl:ENSRNOT00000018995 UCSC:RGD:1305937 Uniprot:D3ZHD6
        Length = 564

 Score = 147 (56.8 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 46/174 (26%), Positives = 82/174 (47%)

Query:    27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEN 78
             MP      T  +FIGN++   S   +R  FEKYG ++E  V+K         Y F+  +N
Sbjct:     1 MPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYG-IIEEVVIKRPARGQGGAYAFLKFQN 59

Query:    79 DEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPY 138
              +    A   ++G+++   P+KI       G   PTT+++VG L  NT    +   F  +
Sbjct:    60 LDMAHRAKVAMSGRVIGRNPIKIGY-----GKANPTTRLWVGGLGPNTSLAALAREFDRF 114

Query:   139 GTVVECDIVRNYGFVHI--DSPDINK--CIKELNGMMVDGKPMKVQISTSRVRQ 188
             G++   D V+   F +I  +S D  +  C K + G  + G   ++++  ++  +
Sbjct:   115 GSIRTIDHVKGDSFAYIQYESLDAAQAACAK-MRGFPLGGPDRRLRVDFAKAEE 167


>UNIPROTKB|O43347 [details] [associations]
            symbol:MSI1 "RNA-binding protein Musashi homolog 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
            "poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
            hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
            differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=TAS] [GO:0007399 "nervous system development"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
            EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
            UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
            IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
            PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
            GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
            GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
            neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
            OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
            Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
            GermOnline:ENSG00000135097 Uniprot:O43347
        Length = 362

 Score = 145 (56.1 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 55/183 (30%), Positives = 89/183 (48%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+FIG ++  T+ E +R  F ++G+V EC V+++        +GFV    D+ G   +  
Sbjct:    21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM-DQAGVDKVLA 79

Query:    89 LNGQIVNEKPLKIEAATSRKG-PN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
              +   ++ K +  + A  R+  P   T T K+FVG LS NT   +V++ F  +G V +  
Sbjct:    80 QSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAM 139

Query:   146 IV--------RNYGFVHIDSPDINK--C---IKELNGMMVDGK---PMKVQISTSRVRQR 189
             ++        R +GFV  +S DI +  C     E+N  MV+ K   P +V   T   R R
Sbjct:   140 LMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGR 199

Query:   190 PGV 192
               V
Sbjct:   200 SRV 202


>UNIPROTKB|I3LRX6 [details] [associations]
            symbol:LOC100523119 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00390000006718 OMA:RIAGISM EMBL:CU179669
            EMBL:CU462924 Ensembl:ENSSSCT00000025498 Uniprot:I3LRX6
        Length = 98

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 31/86 (36%), Positives = 49/86 (56%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             N++ +N P   S+ + ++FIGN+N     ++ I  +F KYGK+V C V K Y FV   ++
Sbjct:     9 NVTNKNDP--KSINS-RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSE 65

Query:    80 EEGRTAIKELNGQIVNEKPL--KIEA 103
                R A+   N +I+  +PL  K EA
Sbjct:    66 RHARAAVAGENARIIAGQPLDEKTEA 91

 Score = 101 (40.6 bits), Expect = 3.1e-05, P = 3.1e-05
 Identities = 20/84 (23%), Positives = 42/84 (50%)

Query:   105 TSRKGPNTPTTKVFVGNLSDN-TRAPEVRELFVPYGTVVECDIVRNYGFV-HIDSPDINK 162
             T++  P +  ++VF+GNL+    +  ++  +F  YG +V C + + Y FV ++       
Sbjct:    11 TNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARA 70

Query:   163 CIKELNGMMVDGKPMKVQISTSRV 186
              +   N  ++ G+P+  +    RV
Sbjct:    71 AVAGENARIIAGQPLDEKTEAERV 94


>UNIPROTKB|E2QWT4 [details] [associations]
            symbol:E2QWT4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00390000006718 EMBL:AAEX03015913
            Ensembl:ENSCAFT00000039292 OMA:RIAGISM Uniprot:E2QWT4
        Length = 98

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 30/87 (34%), Positives = 50/87 (57%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             N++ +N P   S+ + ++FIGN+N     ++ I  +F KYGK+V C V K Y FV   ++
Sbjct:     9 NVTNKNDP--KSINS-RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSE 65

Query:    80 EEGRTAIKELNGQIVNEKPL-KIEAAT 105
                R A+   N +I+  +PL K+ + T
Sbjct:    66 RHARAAVAGENARIIAGQPLGKLRSHT 92

 Score = 95 (38.5 bits), Expect = 0.00015, P = 0.00015
 Identities = 18/75 (24%), Positives = 39/75 (52%)

Query:   105 TSRKGPNTPTTKVFVGNLSDN-TRAPEVRELFVPYGTVVECDIVRNYGFV-HIDSPDINK 162
             T++  P +  ++VF+GNL+    +  ++  +F  YG +V C + + Y FV ++       
Sbjct:    11 TNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARA 70

Query:   163 CIKELNGMMVDGKPM 177
              +   N  ++ G+P+
Sbjct:    71 AVAGENARIIAGQPL 85


>FB|FBgn0001215 [details] [associations]
            symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
            98DE" species:7227 "Drosophila melanogaster" [GO:0030529
            "ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
            "mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0001745 "compound eye morphogenesis"
            evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
            puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
            splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0045727 "positive regulation of translation" evidence=IMP]
            [GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
            stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
            binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
            GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
            GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
            GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
            GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
            OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
            EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
            RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
            RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
            UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
            IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
            PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
            GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
            InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
            GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
            Uniprot:P07909
        Length = 365

 Score = 145 (56.1 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 48/166 (28%), Positives = 84/166 (50%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEN----DEEGRT 84
             K+FIG ++  T+ E ++  FEK+G +V+  V+K+        +GF+   +    DE  ++
Sbjct:    32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91

Query:    85 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT--KVFVGNLSDNTRAPEVRELFVPYGTVV 142
                +++G++V  +P +         PN   T  K+FVG L D+     +R+ F  +G +V
Sbjct:    92 RPHKIDGRVV--EPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIV 149

Query:   143 ECDIV--------RNYGFVHIDSPD-INKCI----KELNGMMVDGK 175
             + +IV        R + FV  D  D ++K +     +LNG MVD K
Sbjct:   150 DINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVK 195


>UNIPROTKB|E7ERJ7 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
            ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
            Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
            Bgee:E7ERJ7 Uniprot:E7ERJ7
        Length = 604

 Score = 147 (56.8 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 39/151 (25%), Positives = 73/151 (48%)

Query:    54 PLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK----- 108
             P   K G V + +  K YGFVH E  E    AI+++NG ++N++ + +    SRK     
Sbjct:    91 PSLRKSGVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 150

Query:   109 -GPNTPT-TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-P 158
              G      T V++ N  ++     +++LF  +G  +   ++       + +GFV  +   
Sbjct:   151 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 210

Query:   159 DINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
             D  K + E+NG  ++GK + V  +  +V ++
Sbjct:   211 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 241

 Score = 103 (41.3 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
 Identities = 37/122 (30%), Positives = 57/122 (46%)

Query:    87 KELNG-QI-VNEKPLKIEAATS--RKGPNTPTTKV--------FVGNLSDNTRAPEVREL 134
             KELNG QI V     K+E  T   RK       ++        +V NL D      +R+ 
Sbjct:   222 KELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKE 281

Query:   135 FVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVR 187
             F P+GT+    ++      + +GFV   SP+   K + E+NG +V  KP+ V ++  R  
Sbjct:   282 FSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA-QRKE 340

Query:   188 QR 189
             +R
Sbjct:   341 ER 342

 Score = 63 (27.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
 Identities = 15/82 (18%), Positives = 38/82 (46%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMEND 79
             P   S     +++G+++P  +  ++   F   G ++    C D++      Y +V+ +  
Sbjct:     3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62

Query:    80 EEGRTAIKELNGQIVNEKPLKI 101
              +   A+  +N  ++  KP++I
Sbjct:    63 ADAERALDTMNFDVIKGKPVRI 84


>MGI|MGI:98287 [details] [associations]
            symbol:Srsf5 "serine/arginine-rich splicing factor 5"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611 "response to
            wounding" evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA]
            [GO:0050733 "RS domain binding" evidence=IPI] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:98287 GO:GO:0009611 GO:GO:0006355 GO:GO:0008380
            GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0006351 GO:GO:0003723 EMBL:CH466590 eggNOG:COG0724
            HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6430
            EMBL:AF020308 EMBL:AK146624 EMBL:AC125092 EMBL:BC082593
            IPI:IPI00314709 IPI:IPI00830743 RefSeq:NP_001073162.1
            RefSeq:NP_001073163.1 RefSeq:NP_033185.2 UniGene:Mm.43331
            ProteinModelPortal:O35326 DIP:DIP-48724N STRING:O35326
            PhosphoSite:O35326 PaxDb:O35326 PRIDE:O35326
            Ensembl:ENSMUST00000094693 Ensembl:ENSMUST00000110352
            Ensembl:ENSMUST00000110356 GeneID:20384 KEGG:mmu:20384
            UCSC:uc007obn.1 NextBio:298306 Genevestigator:O35326
            GermOnline:ENSMUSG00000021134 Uniprot:O35326
        Length = 269

 Score = 113 (44.8 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 21/71 (29%), Positives = 42/71 (59%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             ++FIG +NP    + +   F+ YG++ + D+ + +GFV  E+  +   A+ EL+G+ +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:    97 KPLKIEAATSR 107
             + + IE A +R
Sbjct:    65 ERVTIEHARAR 75

 Score = 111 (44.1 bits), Expect = 0.00025, P = 0.00025
 Identities = 25/77 (32%), Positives = 41/77 (53%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 174
             +VF+G L+   R  +V   F  YG + + D+ R +GFV  + P D +  + EL+G  +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:   175 KPMKVQISTSRVRQRPG 191
             +  +V I  +R R R G
Sbjct:    65 E--RVTIEHARARSRGG 79

 Score = 70 (29.7 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 24/88 (27%), Positives = 40/88 (45%)

Query:   107 RKGPNTPT-TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR---NYGFVHIDS-PDIN 161
             R  P   T  ++ V NLS      ++++     G V   D  R   N G V   S  D+ 
Sbjct:    99 RNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLK 158

Query:   162 KCIKELNGMMVDGKPMKVQISTSRVRQR 189
               I++L+G  ++G+ +K+   + R R R
Sbjct:   159 NAIEKLSGKEINGRKIKLIEGSKRHRSR 186


>RGD|3664 [details] [associations]
            symbol:Srsf5 "serine/arginine-rich splicing factor 5" species:10116
          "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
          [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
          binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
          [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
          evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
          evidence=IEA] [GO:0006355 "regulation of transcription,
          DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
          evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611
          "response to wounding" evidence=ISO] [GO:0016607 "nuclear speck"
          evidence=ISO;ISS] [GO:0050733 "RS domain binding" evidence=ISO]
          [GO:0051726 "regulation of cell cycle" evidence=IEP]
          InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
          SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611 GO:GO:0005730
          GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
          Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0051726
          eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 CTD:6430
          OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683 EMBL:BC058479 EMBL:L33267
          IPI:IPI00201490 IPI:IPI00231768 PIR:B47112 RefSeq:NP_001182434.1
          RefSeq:NP_001182435.1 RefSeq:NP_062130.2 UniGene:Rn.54448
          ProteinModelPortal:Q09167 SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167
          PRIDE:Q09167 Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
          UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
          Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
        Length = 269

 Score = 113 (44.8 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 21/71 (29%), Positives = 42/71 (59%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             ++FIG +NP    + +   F+ YG++ + D+ + +GFV  E+  +   A+ EL+G+ +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:    97 KPLKIEAATSR 107
             + + IE A +R
Sbjct:    65 ERVTIEHARAR 75

 Score = 111 (44.1 bits), Expect = 0.00025, P = 0.00025
 Identities = 25/77 (32%), Positives = 41/77 (53%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 174
             +VF+G L+   R  +V   F  YG + + D+ R +GFV  + P D +  + EL+G  +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:   175 KPMKVQISTSRVRQRPG 191
             +  +V I  +R R R G
Sbjct:    65 E--RVTIEHARARSRGG 79

 Score = 70 (29.7 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 24/88 (27%), Positives = 40/88 (45%)

Query:   107 RKGPNTPT-TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR---NYGFVHIDS-PDIN 161
             R  P   T  ++ V NLS      ++++     G V   D  R   N G V   S  D+ 
Sbjct:    99 RNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLK 158

Query:   162 KCIKELNGMMVDGKPMKVQISTSRVRQR 189
               I++L+G  ++G+ +K+   + R R R
Sbjct:   159 NAIEKLSGKEINGRKIKLIEGSKRHRSR 186


>UNIPROTKB|Q09167 [details] [associations]
            symbol:Srsf5 "Serine/arginine-rich splicing factor 5"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611
            GO:GO:0005730 GO:GO:0006355 GO:GO:0008380 GO:GO:0000166
            GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
            GO:GO:0003723 GO:GO:0051726 eggNOG:COG0724 HOVERGEN:HBG002295
            KO:K12893 CTD:6430 OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683
            EMBL:BC058479 EMBL:L33267 IPI:IPI00201490 IPI:IPI00231768
            PIR:B47112 RefSeq:NP_001182434.1 RefSeq:NP_001182435.1
            RefSeq:NP_062130.2 UniGene:Rn.54448 ProteinModelPortal:Q09167
            SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167 PRIDE:Q09167
            Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
            UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
            Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
        Length = 269

 Score = 113 (44.8 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 21/71 (29%), Positives = 42/71 (59%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             ++FIG +NP    + +   F+ YG++ + D+ + +GFV  E+  +   A+ EL+G+ +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:    97 KPLKIEAATSR 107
             + + IE A +R
Sbjct:    65 ERVTIEHARAR 75

 Score = 111 (44.1 bits), Expect = 0.00025, P = 0.00025
 Identities = 25/77 (32%), Positives = 41/77 (53%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 174
             +VF+G L+   R  +V   F  YG + + D+ R +GFV  + P D +  + EL+G  +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:   175 KPMKVQISTSRVRQRPG 191
             +  +V I  +R R R G
Sbjct:    65 E--RVTIEHARARSRGG 79

 Score = 70 (29.7 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 24/88 (27%), Positives = 40/88 (45%)

Query:   107 RKGPNTPT-TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR---NYGFVHIDS-PDIN 161
             R  P   T  ++ V NLS      ++++     G V   D  R   N G V   S  D+ 
Sbjct:    99 RNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLK 158

Query:   162 KCIKELNGMMVDGKPMKVQISTSRVRQR 189
               I++L+G  ++G+ +K+   + R R R
Sbjct:   159 NAIEKLSGKEINGRKIKLIEGSKRHRSR 186


>RGD|1305742 [details] [associations]
            symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
            protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
            stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
            binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
            translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
            cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
            "regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
            GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
            CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
            RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
            Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
            UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
            Uniprot:Q5PQR7
        Length = 375

 Score = 144 (55.7 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 38/166 (22%), Positives = 76/166 (45%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEEGRTAIKELNG 91
             +++GN++   +  LI  LF + G    C ++ +      Y FV          A+  +NG
Sbjct:     9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 68

Query:    92 QIVNEKPLKIEAATSRKGPNTPTTK---VFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
             + +  K +K+  AT+       T+    VFVG+LS      +++  F P+G + +  +V+
Sbjct:    69 RKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK 128

Query:   149 N--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
             +        YGFV   +  D    I+++ G  + G+ ++   +T +
Sbjct:   129 DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174


>MGI|MGI:1923598 [details] [associations]
            symbol:Rbm15b "RNA binding motif protein 15B" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:1923598 GO:GO:0005654 GO:GO:0006355 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
            GO:GO:0003723 InterPro:IPR012921 Pfam:PF07744 GO:GO:0000381
            eggNOG:NOG250829 PROSITE:PS50917 Gene3D:2.40.290.10
            InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912 CTD:29890
            HOGENOM:HOG000006547 HOVERGEN:HBG058366 KO:K13190 OMA:KRDSERN
            OrthoDB:EOG42RD6Z EMBL:AC147636 EMBL:BC052180 EMBL:AK075777
            IPI:IPI00278942 RefSeq:NP_780611.3 UniGene:Mm.431589
            UniGene:Mm.440089 PDB:1WHY PDBsum:1WHY ProteinModelPortal:Q6PHZ5
            SMR:Q6PHZ5 PhosphoSite:Q6PHZ5 PaxDb:Q6PHZ5 PRIDE:Q6PHZ5
            Ensembl:ENSMUST00000055843 GeneID:109095 KEGG:mmu:109095
            UCSC:uc012gzz.1 GeneTree:ENSGT00530000063730 InParanoid:Q6PHZ5
            EvolutionaryTrace:Q6PHZ5 NextBio:361644 Bgee:Q6PHZ5
            CleanEx:MM_RBM15B Genevestigator:Q6PHZ5
            GermOnline:ENSMUSG00000045365 Uniprot:Q6PHZ5
        Length = 887

 Score = 147 (56.8 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 46/174 (26%), Positives = 82/174 (47%)

Query:    27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEN 78
             MP      T  +FIGN++   S   +R  FEKYG ++E  V+K         Y F+  +N
Sbjct:   324 MPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYG-IIEEVVIKRPARGQGGAYAFLKFQN 382

Query:    79 DEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPY 138
              +    A   ++G+++   P+KI       G   PTT+++VG L  NT    +   F  +
Sbjct:   383 LDMAHRAKVAMSGRVIGRNPIKIGY-----GKANPTTRLWVGGLGPNTSLAALAREFDRF 437

Query:   139 GTVVECDIVRNYGFVHI--DSPDINK--CIKELNGMMVDGKPMKVQISTSRVRQ 188
             G++   D V+   F +I  +S D  +  C K + G  + G   ++++  ++  +
Sbjct:   438 GSIRTIDHVKGDSFAYIQYESLDAAQAACAK-MRGFPLGGPDRRLRVDFAKAEE 490


>UNIPROTKB|Q8NDT2 [details] [associations]
            symbol:RBM15B "Putative RNA-binding protein 15B"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0019048 "virus-host
            interaction" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IDA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0006913
            "nucleocytoplasmic transport" evidence=IDA] [GO:0003723 "RNA
            binding" evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0019048 GO:GO:0005654
            GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 InterPro:IPR012921
            Pfam:PF07744 GO:GO:0000381 eggNOG:NOG250829 PROSITE:PS50917
            Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
            EMBL:AC092037 InterPro:IPR010912 EMBL:AL831838 EMBL:BC001367
            EMBL:AY545557 IPI:IPI00175136 RefSeq:NP_037418.3 UniGene:Hs.118738
            UniGene:Hs.731737 ProteinModelPortal:Q8NDT2 SMR:Q8NDT2
            IntAct:Q8NDT2 STRING:Q8NDT2 PhosphoSite:Q8NDT2 DMDM:229463030
            PaxDb:Q8NDT2 PeptideAtlas:Q8NDT2 PRIDE:Q8NDT2 DNASU:29890
            Ensembl:ENST00000323686 Ensembl:ENST00000563281 GeneID:29890
            KEGG:hsa:29890 UCSC:uc003dbd.3 CTD:29890 GeneCards:GC03P051428
            HGNC:HGNC:24303 HPA:HPA036645 MIM:612602 neXtProt:NX_Q8NDT2
            PharmGKB:PA134870079 HOGENOM:HOG000006547 HOVERGEN:HBG058366
            InParanoid:Q8NDT2 KO:K13190 OMA:KRDSERN OrthoDB:EOG42RD6Z
            GenomeRNAi:29890 NextBio:52441 ArrayExpress:Q8NDT2 Bgee:Q8NDT2
            CleanEx:HS_RBM15B Genevestigator:Q8NDT2 GermOnline:ENSG00000179837
            Uniprot:Q8NDT2
        Length = 890

 Score = 147 (56.8 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 46/174 (26%), Positives = 82/174 (47%)

Query:    27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEN 78
             MP      T  +FIGN++   S   +R  FEKYG ++E  V+K         Y F+  +N
Sbjct:   328 MPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYG-IIEEVVIKRPARGQGGAYAFLKFQN 386

Query:    79 DEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPY 138
              +    A   ++G+++   P+KI       G   PTT+++VG L  NT    +   F  +
Sbjct:   387 LDMAHRAKVAMSGRVIGRNPIKIGY-----GKANPTTRLWVGGLGPNTSLAALAREFDRF 441

Query:   139 GTVVECDIVRNYGFVHI--DSPDINK--CIKELNGMMVDGKPMKVQISTSRVRQ 188
             G++   D V+   F +I  +S D  +  C K + G  + G   ++++  ++  +
Sbjct:   442 GSIRTIDHVKGDSFAYIQYESLDAAQAACAK-MRGFPLGGPDRRLRVDFAKAEE 494


>UNIPROTKB|F1SIZ8 [details] [associations]
            symbol:RBM15B "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR012921 Pfam:PF07744 GO:GO:0000381 PROSITE:PS50917
            Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
            InterPro:IPR010912 KO:K13190 OMA:KRDSERN
            GeneTree:ENSGT00530000063730 EMBL:CU633548 RefSeq:XP_003132286.1
            Ensembl:ENSSSCT00000012500 GeneID:100519215 KEGG:ssc:100519215
            Uniprot:F1SIZ8
        Length = 893

 Score = 147 (56.8 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 46/174 (26%), Positives = 82/174 (47%)

Query:    27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEN 78
             MP      T  +FIGN++   S   +R  FEKYG ++E  V+K         Y F+  +N
Sbjct:   331 MPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYG-IIEEVVIKRPARGQGGAYAFLKFQN 389

Query:    79 DEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPY 138
              +    A   ++G+++   P+KI       G   PTT+++VG L  NT    +   F  +
Sbjct:   390 LDMAHRAKVAMSGRVIGRNPIKIGY-----GKANPTTRLWVGGLGPNTSLAALAREFDRF 444

Query:   139 GTVVECDIVRNYGFVHI--DSPDINK--CIKELNGMMVDGKPMKVQISTSRVRQ 188
             G++   D V+   F +I  +S D  +  C K + G  + G   ++++  ++  +
Sbjct:   445 GSIRTIDHVKGDSFAYIQYESLDAAQAACAK-MRGFPLGGPDRRLRVDFAKAEE 497


>UNIPROTKB|E2RPV8 [details] [associations]
            symbol:RBM15B "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005654 "nucleoplasm" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 InterPro:IPR012921 Pfam:PF07744 GO:GO:0000381
            PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
            SUPFAM:SSF100939 InterPro:IPR010912 KO:K13190 OMA:KRDSERN
            GeneTree:ENSGT00530000063730 EMBL:AAEX03012206
            RefSeq:XP_003639807.1 Ensembl:ENSCAFT00000016286 GeneID:100855610
            KEGG:cfa:100855610 Uniprot:E2RPV8
        Length = 898

 Score = 147 (56.8 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 46/174 (26%), Positives = 82/174 (47%)

Query:    27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEN 78
             MP      T  +FIGN++   S   +R  FEKYG ++E  V+K         Y F+  +N
Sbjct:   337 MPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYG-IIEEVVIKRPARGQGGAYAFLKFQN 395

Query:    79 DEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPY 138
              +    A   ++G+++   P+KI       G   PTT+++VG L  NT    +   F  +
Sbjct:   396 LDMAHRAKVAMSGRVIGRNPIKIGY-----GKANPTTRLWVGGLGPNTSLAALAREFDRF 450

Query:   139 GTVVECDIVRNYGFVHI--DSPDINK--CIKELNGMMVDGKPMKVQISTSRVRQ 188
             G++   D V+   F +I  +S D  +  C K + G  + G   ++++  ++  +
Sbjct:   451 GSIRTIDHVKGDSFAYIQYESLDAAQAACAK-MRGFPLGGPDRRLRVDFAKAEE 503


>ZFIN|ZDB-GENE-050208-746 [details] [associations]
            symbol:celf5 "cugbp, Elav-like family member 5"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
            EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
            Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
        Length = 597

 Score = 125 (49.1 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 36/124 (29%), Positives = 64/124 (51%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-YGFVHM----------ENDEEGRTA 85
             K+FIG +      + ++PLFE++GK+ E  V+K+ Y  +H           E+  + + A
Sbjct:   137 KLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNA 196

Query:    86 IKELNGQIVNEKPLKIEAATSR-KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
             + E        +P++++ A S  +G +    K+FVG L+      +V  LF PYG + EC
Sbjct:   197 LHEQKTLPGMTRPIQVKPADSESRGEDR---KLFVGMLNKQQTEEDVYRLFEPYGVIEEC 253

Query:   145 DIVR 148
              ++R
Sbjct:   254 TVLR 257

 Score = 112 (44.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
 Identities = 28/109 (25%), Positives = 51/109 (46%)

Query:    91 GQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN- 149
             GQ + + P  I+    R+G       +F+ +L       E+ ++F+P+GTV+   +  + 
Sbjct:   488 GQSLPQPPQVIQQQQQREGEGPEGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDR 547

Query:   150 -------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRP 190
                    +GFV  D+P      I+ +NG  +  K +KVQ+   +   RP
Sbjct:   548 ATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDASRP 596

 Score = 80 (33.2 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKEL 89
             K+F+G +N   + E +  LFE YG + EC V+       K   FV      E ++AI  L
Sbjct:   225 KLFVGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISAL 284

Query:    90 NG 91
             +G
Sbjct:   285 HG 286


>MGI|MGI:107376 [details] [associations]
            symbol:Msi1 "musashi RNA-binding protein 1" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
            "response to hormone stimulus" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
            GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
            GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
            EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
            RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
            PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
            ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
            PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
            Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
            UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
            EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
            Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
        Length = 362

 Score = 143 (55.4 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 55/183 (30%), Positives = 88/183 (48%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+FIG ++  T+ E +R  F ++G+V EC V+++        +GFV    D+ G   +  
Sbjct:    21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM-DQAGVDKVLA 79

Query:    89 LNGQIVNEKPLKIEAATSRKG-PN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
              +   ++ K +  + A  R+  P   T T K+FVG LS NT   +V+  F  +G V +  
Sbjct:    80 QSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAM 139

Query:   146 IV--------RNYGFVHIDSPDINK--C---IKELNGMMVDGK---PMKVQISTSRVRQR 189
             ++        R +GFV  +S DI +  C     E+N  MV+ K   P +V   T   R R
Sbjct:   140 LMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGR 199

Query:   190 PGV 192
               V
Sbjct:   200 SRV 202


>RGD|628778 [details] [associations]
            symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
            "cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
            evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
            evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
            evidence=IMP] [GO:0030855 "epithelial cell differentiation"
            evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
            RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
            SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
            KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
            Genevestigator:Q8K3P4 Uniprot:Q8K3P4
        Length = 362

 Score = 143 (55.4 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 55/183 (30%), Positives = 88/183 (48%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+FIG ++  T+ E +R  F ++G+V EC V+++        +GFV    D+ G   +  
Sbjct:    21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM-DQAGVDKVLA 79

Query:    89 LNGQIVNEKPLKIEAATSRKG-PN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
              +   ++ K +  + A  R+  P   T T K+FVG LS NT   +V+  F  +G V +  
Sbjct:    80 QSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAM 139

Query:   146 IV--------RNYGFVHIDSPDINK--C---IKELNGMMVDGK---PMKVQISTSRVRQR 189
             ++        R +GFV  +S DI +  C     E+N  MV+ K   P +V   T   R R
Sbjct:   140 LMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGR 199

Query:   190 PGV 192
               V
Sbjct:   200 SRV 202


>UNIPROTKB|Q8K3P4 [details] [associations]
            symbol:Msi1 "RNA-binding protein Musashi homolog 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
            RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
            SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
            KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
            Genevestigator:Q8K3P4 Uniprot:Q8K3P4
        Length = 362

 Score = 143 (55.4 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 55/183 (30%), Positives = 88/183 (48%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+FIG ++  T+ E +R  F ++G+V EC V+++        +GFV    D+ G   +  
Sbjct:    21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM-DQAGVDKVLA 79

Query:    89 LNGQIVNEKPLKIEAATSRKG-PN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
              +   ++ K +  + A  R+  P   T T K+FVG LS NT   +V+  F  +G V +  
Sbjct:    80 QSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAM 139

Query:   146 IV--------RNYGFVHIDSPDINK--C---IKELNGMMVDGK---PMKVQISTSRVRQR 189
             ++        R +GFV  +S DI +  C     E+N  MV+ K   P +V   T   R R
Sbjct:   140 LMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGR 199

Query:   190 PGV 192
               V
Sbjct:   200 SRV 202


>UNIPROTKB|F1P0I8 [details] [associations]
            symbol:RALY "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 InterPro:IPR017347
            PIRSF:PIRSF037992 GeneTree:ENSGT00390000006718 OMA:QTRDDGD
            EMBL:AADN02019478 EMBL:AADN02019479 EMBL:AADN02019480
            IPI:IPI00819673 Ensembl:ENSGALT00000040421 Uniprot:F1P0I8
        Length = 285

 Score = 141 (54.7 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 34/94 (36%), Positives = 51/94 (54%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             NI+ +N P   S+ + ++FIGN+N     +  +  +F KYG+VV C V K Y FV   N+
Sbjct:    11 NITNKNDP--KSINS-RVFIGNLNTAVVKKSDVETIFSKYGRVVGCSVHKGYAFVQYSNE 67

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP 113
                R A+   NG+++  + L I  A   K PN P
Sbjct:    68 RHARAAVLGENGRVLAGQTLDINMAGEPK-PNRP 100


>UNIPROTKB|E5RG71 [details] [associations]
            symbol:RALYL "RNA-binding Raly-like protein" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:27036
            ChiTaRS:RALYL EMBL:AC009901 EMBL:AC012400 EMBL:AC027043
            EMBL:AC087368 EMBL:AC092699 EMBL:AC092709 EMBL:AC103816
            IPI:IPI00981789 SMR:E5RG71 Ensembl:ENST00000517988
            Ensembl:ENST00000522613 Uniprot:E5RG71
        Length = 85

 Score = 126 (49.4 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 27/80 (33%), Positives = 46/80 (57%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             N++ +N P   S+ + ++FIGN+N     ++ I  +F KYGK+V C V K Y FV   ++
Sbjct:     9 NVTNKNDP--KSINS-RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSE 65

Query:    80 EEGRTAIKELNGQIVNEKPL 99
                R A+   N +++  +PL
Sbjct:    66 RHARAAVAGENARVIAGQPL 85

 Score = 95 (38.5 bits), Expect = 0.00015, P = 0.00015
 Identities = 18/75 (24%), Positives = 39/75 (52%)

Query:   105 TSRKGPNTPTTKVFVGNLSDN-TRAPEVRELFVPYGTVVECDIVRNYGFV-HIDSPDINK 162
             T++  P +  ++VF+GNL+    +  ++  +F  YG +V C + + Y FV ++       
Sbjct:    11 TNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARA 70

Query:   163 CIKELNGMMVDGKPM 177
              +   N  ++ G+P+
Sbjct:    71 AVAGENARVIAGQPL 85


>UNIPROTKB|Q800W4 [details] [associations]
            symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=IEA]
            [GO:0042036 "negative regulation of cytokine biosynthetic process"
            evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
            spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
            HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
            KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
            UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
            EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
            RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
            Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
            InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
        Length = 372

 Score = 143 (55.4 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 38/166 (22%), Positives = 77/166 (46%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEEGRTAIKELNG 91
             +++GN++   +  LI  LF + G    C ++ +      Y FV         +A+  +NG
Sbjct:     9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAASALAAMNG 68

Query:    92 QIVNEKPLKIEAATSRKGPNTPTTK---VFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
             + +  K +K+  AT+       T+    VFVG+LS      +++  F P+G + +  +V+
Sbjct:    69 RKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK 128

Query:   149 N--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
             +        YGFV   +  D    I+++ G  + G+ ++   +T +
Sbjct:   129 DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174


>DICTYBASE|DDB_G0275409 [details] [associations]
            symbol:DDB_G0275409 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0275409 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
            RefSeq:XP_001134599.1 ProteinModelPortal:Q1ZXL1
            EnsemblProtists:DDB0233346 GeneID:8619946 KEGG:ddi:DDB_G0275409
            eggNOG:NOG288151 InParanoid:Q1ZXL1 OMA:DIKNGYA Uniprot:Q1ZXL1
        Length = 737

 Score = 146 (56.5 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 52/183 (28%), Positives = 88/183 (48%)

Query:    13 SRYSNNQINISCRNMPGFSSVGTFK-----IFIGNVNPGTSVELIRPLFEKYGKVVE-CD 66
             SR  +N  + S  N  G  S+ +       IF+GN+   T V+ I  LF+ Y K +E  D
Sbjct:   112 SRSRSNLSDKSSGNSSGSGSLSSGSDTKETIFVGNLPRDTIVKDIENLFKNYVKSIEKVD 171

Query:    67 VVKNYGFVHME-NDEEGRTAIKELNGQIVNEKPLKIEAATS--RKGPNT----PTTKVFV 119
             +   Y FV +  ND +    +KEL+ +    K L ++ A S  +K   +    P+  +F+
Sbjct:   172 IKNGYAFVIVSTNDPD--IVVKELHRKEFLNKSLTVQIAKSESKKKEESEEVKPSRAIFI 229

Query:   120 GNLS-DNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPM 177
              N +   T   ++ +   PYG V    +V+N+ FV  ++ D  +K +K L+    DG  +
Sbjct:   230 VNYNVSKTTTNDIADWCSPYGNVNRVQMVKNFCFVEFETIDQASKALKALDLKSFDGHSL 289

Query:   178 KVQ 180
              V+
Sbjct:   290 TVE 292


>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
            symbol:tia1 "cytotoxic granule-associated RNA
            binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
            GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
            CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
            EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
            RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
            Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
            InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
        Length = 386

 Score = 143 (55.4 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 41/166 (24%), Positives = 75/166 (45%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVEC----DVVKN--YGFVHMENDEEGRTAIKELNG 91
             +++GN++   +  LI  LF + G    C    D   N  Y FV          ++  +NG
Sbjct:    10 LYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDPYCFVEFFEHRHAAASLAAMNG 69

Query:    92 QIVNEKPLKIEAATSRKGPNTPTTK---VFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
             + +  K +K+  ATS       T+    VFVG+LS      ++R  F P+G + +  +V+
Sbjct:    70 RKIMGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVK 129

Query:   149 N--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSR 185
             +        YGFV   +  D    I+++ G  + G+ ++   +T +
Sbjct:   130 DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 175


>UNIPROTKB|Q9TTV2 [details] [associations]
            symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
            A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
            "ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
            GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
            ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
        Length = 341

 Score = 142 (55.0 bits), Expect = 4.1e-08, P = 4.1e-08
 Identities = 42/170 (24%), Positives = 84/170 (49%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG ++  T+ E +R  +E++GK+ +C V+++        +GFV   +  E   A+  
Sbjct:    10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                 ++G++V  K       + + G +    K+FVG + ++T    +R+ F  YG +   
Sbjct:    70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTI 129

Query:   145 DIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
             +I+        R +GFV  D  D ++K + +     ++G   +V+ + SR
Sbjct:   130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ-KYHTINGHNAEVRKALSR 178


>UNIPROTKB|Q5RBU8 [details] [associations]
            symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
            A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
            complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
            HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
            RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
            ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
            KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
        Length = 353

 Score = 142 (55.0 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 42/170 (24%), Positives = 85/170 (50%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG ++  T+ E +R  +E++GK+ +C V+++        +GFV   +  E   A+  
Sbjct:    22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                 ++G++V  K       + + G +    K+FVG + ++T    +R+ F  YG +   
Sbjct:    82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141

Query:   145 DIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
             +I+        R +GFV  D  D ++K + + +   ++G   +V+ + SR
Sbjct:   142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHT-INGHNAEVRKALSR 190


>UNIPROTKB|Q5QPM1 [details] [associations]
            symbol:RALY "RNA-binding protein Raly" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000231958
            HOVERGEN:HBG002302 EMBL:AL031668 UniGene:Hs.136947 HGNC:HGNC:15921
            ChiTaRS:RALY EMBL:AL034549 IPI:IPI00641351 SMR:Q5QPM1 STRING:Q5QPM1
            Ensembl:ENST00000448364 Uniprot:Q5QPM1
        Length = 181

 Score = 130 (50.8 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 31/94 (32%), Positives = 50/94 (53%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             N++ +N P   S+ + ++FIGN+N     +  +  +F KYG+V  C V K Y FV   N+
Sbjct:     9 NVTNKNDP--KSINS-RVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNE 65

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP 113
                R A+   NG+++  + L I  A   K P+ P
Sbjct:    66 RHARAAVLGENGRVLAGQTLDINMAGEPK-PDRP 98

 Score = 102 (41.0 bits), Expect = 0.00098, P = 0.00098
 Identities = 24/96 (25%), Positives = 48/96 (50%)

Query:    99 LKIEAA--TSRKGPNTPTTKVFVGNLSDN-TRAPEVRELFVPYGTVVECDIVRNYGFVHI 155
             LK++A+  T++  P +  ++VF+GNL+    +  +V  +F  YG V  C + + Y FV  
Sbjct:     3 LKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQY 62

Query:   156 DSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRP 190
              +       +   NG ++ G+ + + ++      RP
Sbjct:    63 SNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRP 98


>UNIPROTKB|F1SCL3 [details] [associations]
            symbol:LOC100522980 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
            RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
            KEGG:ssc:100522980 Uniprot:F1SCL3
        Length = 354

 Score = 142 (55.0 bits), Expect = 4.5e-08, P = 4.5e-08
 Identities = 42/168 (25%), Positives = 84/168 (50%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG +   T  E +R  ++++GK+ +C V+++        +GFV   +  E   A+  
Sbjct:    22 KLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMAA 81

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                 ++G++V  K +     + + G    T K+FVG + ++T    +R+ F  YGT+   
Sbjct:    82 RPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTIDAI 141

Query:   145 DIVRN------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
             +I+R       +GFV  D  D ++K + +     ++G   +++ + SR
Sbjct:   142 EIIRQSGRKTAFGFVTFDDHDPVDKIVLQ-KYHTINGHHAQLEKALSR 188


>UNIPROTKB|F1SCM6 [details] [associations]
            symbol:LOC100522063 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
            RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
            KEGG:ssc:100522063 Uniprot:F1SCM6
        Length = 354

 Score = 142 (55.0 bits), Expect = 4.5e-08, P = 4.5e-08
 Identities = 42/168 (25%), Positives = 84/168 (50%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG +   T  E +R  ++++GK+ +C V+++        +GFV   +  E   A+  
Sbjct:    22 KLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMAA 81

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                 ++G++V  K +     + + G    T K+FVG + ++T    +R+ F  YGT+   
Sbjct:    82 RPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTIDAI 141

Query:   145 DIVRN------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
             +I+R       +GFV  D  D ++K + +     ++G   +++ + SR
Sbjct:   142 EIIRQSGRKTAFGFVTFDDHDPVDKIVLQ-KYHTINGHHAQLEKALSR 188


>UNIPROTKB|F6RM04 [details] [associations]
            symbol:RBM15B "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
            Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
            SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
            EMBL:DAAA02054396 IPI:IPI00705216 Ensembl:ENSBTAT00000008515
            OMA:ISHELDD Uniprot:F6RM04
        Length = 940

 Score = 146 (56.5 bits), Expect = 5.0e-08, P = 5.0e-08
 Identities = 46/174 (26%), Positives = 82/174 (47%)

Query:    27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEN 78
             MP      T  +FIGN++   S   +R  FEKYG ++E  V+K         Y F+  +N
Sbjct:   381 MPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYG-IIEEVVIKRPARGQGGAYAFLKFQN 439

Query:    79 DEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPY 138
              +    A   ++G+++   P+KI       G   PTT+++VG L  NT    +   F  +
Sbjct:   440 LDMAHRAKVGMSGRVIGRNPIKIGY-----GKANPTTRLWVGGLGPNTSLAALAREFDRF 494

Query:   139 GTVVECDIVRNYGFVHI--DSPDINK--CIKELNGMMVDGKPMKVQISTSRVRQ 188
             G++   D V+   F +I  +S D  +  C K + G  + G   ++++  ++  +
Sbjct:   495 GSIRTIDHVKGDSFAYIQYESLDAAQAACAK-MRGFPLGGPDRRLRVDFAKAEE 547


>UNIPROTKB|J9PA38 [details] [associations]
            symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431 EMBL:AAEX03013949
            GeneID:403667 KEGG:cfa:403667 RefSeq:XP_003639909.1
            Ensembl:ENSCAFT00000044157 Uniprot:J9PA38
        Length = 135

 Score = 124 (48.7 bits), Expect = 6.1e-08, P = 6.1e-08
 Identities = 27/77 (35%), Positives = 43/77 (55%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 174
             +V++G LS N R  +++  F  YG ++E D+   YGFV   DS D +  + ELNG  + G
Sbjct:     3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62

Query:   175 KPMKVQISTSRVRQRPG 191
             + + V+ +    R R G
Sbjct:    63 ERVIVEHARGPRRDRDG 79

 Score = 102 (41.0 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 23/75 (30%), Positives = 43/75 (57%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNG-QIVN 95
             +++IG ++     + I+  F  YG+++E D+   YGFV  E+  +   A+ ELNG ++  
Sbjct:     3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62

Query:    96 EKPLKIEAATSRKGP 110
             E+ + +E A   +GP
Sbjct:    63 ERVI-VEHA---RGP 73


>UNIPROTKB|A1L544 [details] [associations]
            symbol:TNRC4 "Trinucleotide repeat containing 4"
            species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 UniGene:Bt.18201 HOVERGEN:HBG002295
            EMBL:DAAA02007247 EMBL:BT029831 IPI:IPI00906974 SMR:A1L544
            Ensembl:ENSBTAT00000056432 HOGENOM:HOG000220928 Uniprot:A1L544
        Length = 139

 Score = 124 (48.7 bits), Expect = 6.1e-08, P = 6.1e-08
 Identities = 32/124 (25%), Positives = 67/124 (54%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-YGFVHM----------ENDEEGRTA 85
             K+F+G +      + ++P+FE++G++ E  V+K+ Y  +H           ++  + ++A
Sbjct:     8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67

Query:    86 IKELNGQIVNEKPLKIEAATSR-KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
             + E        +P++++ A S  +G +    K+FVG L       +VR++F P+GT+ EC
Sbjct:    68 LHEQKTLPGMNRPIQVKPADSESRGEDR---KLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124

Query:   145 DIVR 148
              ++R
Sbjct:   125 TVLR 128


>TAIR|locus:2087457 [details] [associations]
            symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
            "glucose catabolic process" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
            EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
            UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
            STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
            KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
            PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
            Uniprot:Q9LJH8
        Length = 427

 Score = 142 (55.0 bits), Expect = 6.5e-08, P = 6.5e-08
 Identities = 44/190 (23%), Positives = 85/190 (44%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK----NYGFVHMENDEEGR 83
             PGF       +++GN++   +  L++ +F   G V    +++    +YGFVH  +     
Sbjct:    51 PGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAA 110

Query:    84 TAIKELNGQIVNEKPLKIE--AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
              AI  LNG+ +  +P+K+    AT ++   +    +FVG+LS       + + F  + + 
Sbjct:   111 LAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSC 170

Query:   142 VECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGV 192
              +  ++        R +GFV   +  D    I E+NG  +  + ++   +T       G 
Sbjct:   171 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATS--GD 228

Query:   193 DEVVIGQKSV 202
             D++    KSV
Sbjct:   229 DKLSSDGKSV 238


>UNIPROTKB|F1S4B2 [details] [associations]
            symbol:SRSF5 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
            OMA:RKSYTRS Ensembl:ENSSSCT00000002574 Uniprot:F1S4B2
        Length = 263

 Score = 113 (44.8 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
 Identities = 21/71 (29%), Positives = 42/71 (59%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             ++FIG +NP    + +   F+ YG++ + D+ + +GFV  E+  +   A+ EL+G+ +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:    97 KPLKIEAATSR 107
             + + IE A +R
Sbjct:    65 ERVTIEHARAR 75

 Score = 111 (44.1 bits), Expect = 0.00024, P = 0.00024
 Identities = 25/77 (32%), Positives = 41/77 (53%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 174
             +VF+G L+   R  +V   F  YG + + D+ R +GFV  + P D +  + EL+G  +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:   175 KPMKVQISTSRVRQRPG 191
             +  +V I  +R R R G
Sbjct:    65 E--RVTIEHARARSRGG 79

 Score = 64 (27.6 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
 Identities = 24/88 (27%), Positives = 40/88 (45%)

Query:   107 RKGPNTPT-TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR---NYGFVHIDS-PDIN 161
             R  P   T  ++ V NLS      ++++     G V   D  R   N G V   S  D+ 
Sbjct:    99 RNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLK 158

Query:   162 KCIKELNGMMVDGKPMKVQISTSRVRQR 189
               I++L+G  ++G+ +K+ I  S+   R
Sbjct:   159 NAIEKLSGKEINGRKIKL-IEGSKRHSR 185


>UNIPROTKB|F1LM82 [details] [associations]
            symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
            A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
            GeneTree:ENSGT00700000104376 IPI:IPI00923129
            Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
        Length = 312

 Score = 140 (54.3 bits), Expect = 6.7e-08, P = 6.7e-08
 Identities = 42/170 (24%), Positives = 84/170 (49%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG ++  T+ E +R  +E++GK+ +C V+++        +GFV   +  E   A+  
Sbjct:    21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                 ++G++V  K       + + G +    K+FVG + ++T    +R+ F  YG +   
Sbjct:    81 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 140

Query:   145 DIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
             +I+        R +GFV  D  D ++K + +     ++G   +V+ + SR
Sbjct:   141 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ-KYHTINGHNAEVRKALSR 189


>UNIPROTKB|E1C9H9 [details] [associations]
            symbol:MANF "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0005654 "nucleoplasm" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR012921 Pfam:PF07744 GO:GO:0000381 PROSITE:PS50917
            Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
            InterPro:IPR010912 OMA:KRDSERN GeneTree:ENSGT00530000063730
            EMBL:AADN02056521 IPI:IPI00572917 ProteinModelPortal:E1C9H9
            Ensembl:ENSGALT00000003739 Uniprot:E1C9H9
        Length = 557

 Score = 143 (55.4 bits), Expect = 7.3e-08, P = 7.3e-08
 Identities = 44/173 (25%), Positives = 81/173 (46%)

Query:    27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMEN 78
             MP      T  +FIGN++   S   +R  FEKYG ++E  V+K         Y F+  +N
Sbjct:     1 MPEDDQRATRNLFIGNLDHNVSEVELRRAFEKYG-IIEEVVIKRPARGQGGAYAFLKFQN 59

Query:    79 DEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPY 138
              +    A   ++G++V   P+KI       G   PTT+++VG L  +T    +   F  +
Sbjct:    60 LDMAHRAKVAMSGRVVGRNPIKIGY-----GKANPTTRLWVGGLGPSTSLAALAREFDRF 114

Query:   139 GTVVECDIVRNYGFVHI--DSPDINKCI-KELNGMMVDGKPMKVQISTSRVRQ 188
             G++   D V+   F +I  +S D  +    ++ G  + G   ++++  ++  +
Sbjct:   115 GSIRTIDYVKGDSFAYIQYESLDAAQAACAQMRGFPLGGPERRLRVDFAKAEE 167


>UNIPROTKB|A6H7B7 [details] [associations]
            symbol:SFRS5 "SFRS5 protein" species:9913 "Bos taurus"
            [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
            GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
            CTD:6430 OMA:RKSYTRS OrthoDB:EOG4RJG2V EMBL:DAAA02029514
            EMBL:BC146185 IPI:IPI00687732 RefSeq:NP_001092399.1
            UniGene:Bt.46079 STRING:A6H7B7 Ensembl:ENSBTAT00000015408
            GeneID:510474 KEGG:bta:510474 InParanoid:A6H7B7 NextBio:20869461
            Uniprot:A6H7B7
        Length = 272

 Score = 113 (44.8 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
 Identities = 21/71 (29%), Positives = 42/71 (59%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             ++FIG +NP    + +   F+ YG++ + D+ + +GFV  E+  +   A+ EL+G+ +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:    97 KPLKIEAATSR 107
             + + IE A +R
Sbjct:    65 ERVTIEHARAR 75

 Score = 111 (44.1 bits), Expect = 0.00026, P = 0.00026
 Identities = 25/77 (32%), Positives = 41/77 (53%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 174
             +VF+G L+   R  +V   F  YG + + D+ R +GFV  + P D +  + EL+G  +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:   175 KPMKVQISTSRVRQRPG 191
             +  +V I  +R R R G
Sbjct:    65 E--RVTIEHARARSRGG 79

 Score = 64 (27.6 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
 Identities = 24/88 (27%), Positives = 40/88 (45%)

Query:   107 RKGPNTPT-TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR---NYGFVHIDS-PDIN 161
             R  P   T  ++ V NLS      ++++     G V   D  R   N G V   S  D+ 
Sbjct:    99 RNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLK 158

Query:   162 KCIKELNGMMVDGKPMKVQISTSRVRQR 189
               I++L+G  ++G+ +K+ I  S+   R
Sbjct:   159 NAIEKLSGKEINGRKIKL-IEGSKRHSR 185


>UNIPROTKB|E2R8E5 [details] [associations]
            symbol:SRSF5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
            KO:K12893 CTD:6430 OMA:RKSYTRS EMBL:AAEX03005813 RefSeq:XP_867135.1
            RefSeq:XP_867196.2 ProteinModelPortal:E2R8E5
            Ensembl:ENSCAFT00000026276 GeneID:490754 KEGG:cfa:490754
            NextBio:20863714 Uniprot:E2R8E5
        Length = 272

 Score = 113 (44.8 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
 Identities = 21/71 (29%), Positives = 42/71 (59%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             ++FIG +NP    + +   F+ YG++ + D+ + +GFV  E+  +   A+ EL+G+ +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:    97 KPLKIEAATSR 107
             + + IE A +R
Sbjct:    65 ERVTIEHARAR 75

 Score = 111 (44.1 bits), Expect = 0.00026, P = 0.00026
 Identities = 25/77 (32%), Positives = 41/77 (53%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 174
             +VF+G L+   R  +V   F  YG + + D+ R +GFV  + P D +  + EL+G  +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:   175 KPMKVQISTSRVRQRPG 191
             +  +V I  +R R R G
Sbjct:    65 E--RVTIEHARARSRGG 79

 Score = 64 (27.6 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
 Identities = 24/88 (27%), Positives = 40/88 (45%)

Query:   107 RKGPNTPT-TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR---NYGFVHIDS-PDIN 161
             R  P   T  ++ V NLS      ++++     G V   D  R   N G V   S  D+ 
Sbjct:    99 RNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLK 158

Query:   162 KCIKELNGMMVDGKPMKVQISTSRVRQR 189
               I++L+G  ++G+ +K+ I  S+   R
Sbjct:   159 NAIEKLSGKEINGRKIKL-IEGSKRHSR 185


>UNIPROTKB|Q13243 [details] [associations]
            symbol:SRSF5 "Serine/arginine-rich splicing factor 5"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0051726
            "regulation of cell cycle" evidence=IEA] [GO:0016607 "nuclear
            speck" evidence=ISS] [GO:0006376 "mRNA splice site selection"
            evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
            II transcription" evidence=TAS] [GO:0006406 "mRNA export from
            nucleus" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0031124 "mRNA
            3'-end processing" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
            GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0051726 GO:GO:0006406 Reactome:REACT_1788 eggNOG:COG0724
            GO:GO:0006376 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
            HOVERGEN:HBG002295 KO:K12893 EMBL:U30826 EMBL:U30884 EMBL:U30827
            EMBL:BT007089 EMBL:AK311805 EMBL:CR542167 EMBL:CR542182
            EMBL:BX640605 EMBL:AB451250 EMBL:BC018823 EMBL:BC040209
            EMBL:AF020307 IPI:IPI00012341 IPI:IPI00221286 IPI:IPI00413654
            PIR:S59042 RefSeq:NP_001034554.1 RefSeq:NP_008856.2
            UniGene:Hs.632326 ProteinModelPortal:Q13243 SMR:Q13243
            IntAct:Q13243 MINT:MINT-1400587 STRING:Q13243 PhosphoSite:Q13243
            DMDM:3929378 PaxDb:Q13243 PRIDE:Q13243 DNASU:6430
            Ensembl:ENST00000394366 Ensembl:ENST00000553521
            Ensembl:ENST00000553635 Ensembl:ENST00000557154 GeneID:6430
            KEGG:hsa:6430 UCSC:uc001xll.3 CTD:6430 GeneCards:GC14P070234
            HGNC:HGNC:10787 HPA:HPA043484 MIM:600914 neXtProt:NX_Q13243
            PharmGKB:PA35703 InParanoid:Q13243 OMA:RKSYTRS OrthoDB:EOG4RJG2V
            PhylomeDB:Q13243 ChiTaRS:SRSF5 GenomeRNAi:6430 NextBio:24973
            ArrayExpress:Q13243 Bgee:Q13243 CleanEx:HS_SFRS5
            Genevestigator:Q13243 GermOnline:ENSG00000100650 Uniprot:Q13243
        Length = 272

 Score = 113 (44.8 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
 Identities = 21/71 (29%), Positives = 42/71 (59%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             ++FIG +NP    + +   F+ YG++ + D+ + +GFV  E+  +   A+ EL+G+ +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:    97 KPLKIEAATSR 107
             + + IE A +R
Sbjct:    65 ERVTIEHARAR 75

 Score = 111 (44.1 bits), Expect = 0.00026, P = 0.00026
 Identities = 25/77 (32%), Positives = 41/77 (53%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 174
             +VF+G L+   R  +V   F  YG + + D+ R +GFV  + P D +  + EL+G  +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:   175 KPMKVQISTSRVRQRPG 191
             +  +V I  +R R R G
Sbjct:    65 E--RVTIEHARARSRGG 79

 Score = 64 (27.6 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
 Identities = 24/88 (27%), Positives = 40/88 (45%)

Query:   107 RKGPNTPT-TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR---NYGFVHIDS-PDIN 161
             R  P   T  ++ V NLS      ++++     G V   D  R   N G V   S  D+ 
Sbjct:    99 RNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLK 158

Query:   162 KCIKELNGMMVDGKPMKVQISTSRVRQR 189
               I++L+G  ++G+ +K+ I  S+   R
Sbjct:   159 NAIEKLSGKEINGRKIKL-IEGSKRHSR 185


>UNIPROTKB|Q2HJ60 [details] [associations]
            symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
            A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
            complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
            intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
            evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
            telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
            OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
            RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
            SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
            GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
            KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
        Length = 341

 Score = 140 (54.3 bits), Expect = 8.3e-08, P = 8.3e-08
 Identities = 42/170 (24%), Positives = 84/170 (49%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG ++  T+ E +R  +E++GK+ +C V+++        +GFV   +  E   A+  
Sbjct:    10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                 ++G++V  K       + + G +    K+FVG + ++T    +R+ F  YG +   
Sbjct:    70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129

Query:   145 DIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
             +I+        R +GFV  D  D ++K + +     ++G   +V+ + SR
Sbjct:   130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ-KYHTINGHNAEVRKALSR 178


>TAIR|locus:2015398 [details] [associations]
            symbol:RBP47C' "RNA-binding protein 47C'" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
            "poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
            EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
            EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
            RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
            ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
            EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
            TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
            ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
        Length = 434

 Score = 98 (39.6 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
 Identities = 28/80 (35%), Positives = 40/80 (50%)

Query:    38 IFIGNVNPGTSVELIRPLF-EKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKE 88
             IF+G++ P  S  L+   F EKY  V    VV        K YGFV   ++ E   A+ E
Sbjct:   201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260

Query:    89 LNGQIVNEKPLKIEAATSRK 108
             +NG   + + ++I  AT RK
Sbjct:   261 MNGVKCSSRAMRIGPATPRK 280

 Score = 89 (36.4 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
 Identities = 24/85 (28%), Positives = 46/85 (54%)

Query:   104 ATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVH-IDSPDI 160
             A +R   +T  T +FVG L  +    ++++ F  +G +V   I   +  GFV  ++ P+ 
Sbjct:   295 AFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNA 354

Query:   161 NKCIKELNGMMVDGKPMKVQISTSR 185
              + +++LNG ++ GK   V++S  R
Sbjct:   355 EEALEKLNGTVI-GK-QTVRLSWGR 377


>UNIPROTKB|F1LNF1 [details] [associations]
            symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
            A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
            GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
            GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
            ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
            ArrayExpress:F1LNF1 Uniprot:F1LNF1
        Length = 352

 Score = 140 (54.3 bits), Expect = 8.9e-08, P = 8.9e-08
 Identities = 42/170 (24%), Positives = 84/170 (49%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG ++  T+ E +R  +E++GK+ +C V+++        +GFV   +  E   A+  
Sbjct:    21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                 ++G++V  K       + + G +    K+FVG + ++T    +R+ F  YG +   
Sbjct:    81 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 140

Query:   145 DIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
             +I+        R +GFV  D  D ++K + +     ++G   +V+ + SR
Sbjct:   141 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ-KYHTINGHNAEVRKALSR 189


>UNIPROTKB|F1Q1K6 [details] [associations]
            symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
            Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
        Length = 353

 Score = 140 (54.3 bits), Expect = 9.0e-08, P = 9.0e-08
 Identities = 42/170 (24%), Positives = 84/170 (49%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG ++  T+ E +R  +E++GK+ +C V+++        +GFV   +  E   A+  
Sbjct:    22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                 ++G++V  K       + + G +    K+FVG + ++T    +R+ F  YG +   
Sbjct:    82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141

Query:   145 DIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
             +I+        R +GFV  D  D ++K + +     ++G   +V+ + SR
Sbjct:   142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ-KYHTINGHNAEVRKALSR 190


>UNIPROTKB|P22626 [details] [associations]
            symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
            A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
            step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
            [GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
            "single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
            "RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
            evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
            "RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
            GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
            HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
            HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
            EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
            EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
            PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
            PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
            IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
            DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
            REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
            SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
            Ensembl:ENST00000354667 Ensembl:ENST00000356674
            Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
            UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
            MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
            ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
            NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
            Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
        Length = 353

 Score = 140 (54.3 bits), Expect = 9.0e-08, P = 9.0e-08
 Identities = 42/170 (24%), Positives = 84/170 (49%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG ++  T+ E +R  +E++GK+ +C V+++        +GFV   +  E   A+  
Sbjct:    22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                 ++G++V  K       + + G +    K+FVG + ++T    +R+ F  YG +   
Sbjct:    82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141

Query:   145 DIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
             +I+        R +GFV  D  D ++K + +     ++G   +V+ + SR
Sbjct:   142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ-KYHTINGHNAEVRKALSR 190


>MGI|MGI:104819 [details] [associations]
            symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
            A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
            [GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
            [GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
            evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
            [GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
            CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
            ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
            EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
            EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
            RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
            UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
            IntAct:O88569 STRING:O88569 PhosphoSite:O88569
            REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
            SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
            Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
            Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
            KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
            NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
            Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
        Length = 353

 Score = 140 (54.3 bits), Expect = 9.0e-08, P = 9.0e-08
 Identities = 42/170 (24%), Positives = 84/170 (49%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG ++  T+ E +R  +E++GK+ +C V+++        +GFV   +  E   A+  
Sbjct:    22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                 ++G++V  K       + + G +    K+FVG + ++T    +R+ F  YG +   
Sbjct:    82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141

Query:   145 DIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
             +I+        R +GFV  D  D ++K + +     ++G   +V+ + SR
Sbjct:   142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ-KYHTINGHNAEVRKALSR 190


>UNIPROTKB|D4A1X0 [details] [associations]
            symbol:D4A1X0 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
            GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
            ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
        Length = 312

 Score = 139 (54.0 bits), Expect = 9.1e-08, P = 9.1e-08
 Identities = 38/148 (25%), Positives = 74/148 (50%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG ++  T+ E +R  +E++GK+ +C V+++        +GFV   +  E   A+  
Sbjct:    10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                 ++G++V  K       + + G +    K+FVG + ++T    +R+ F  YG +   
Sbjct:    70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129

Query:   145 DIV-------RNYGFVHIDSPD-INKCI 164
             +I+       R +GFV  D  D ++K +
Sbjct:   130 EIITDRQSGKRGFGFVTFDDHDPVDKIV 157


>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
            symbol:hnrnpa0b "heterogeneous nuclear
            ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
            EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
            ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
            GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
            OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
            Uniprot:Q6NYW8
        Length = 314

 Score = 139 (54.0 bits), Expect = 9.3e-08, P = 9.3e-08
 Identities = 33/124 (26%), Positives = 64/124 (51%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+F+G +N  T+ + +R  FE++G + +C VV+N        +GFV     EE   A+  
Sbjct:     9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAA 68

Query:    89 LNGQIVNEKPLKIEAATSRKGPNTPTT-----KVFVGNLSDNTRAPEVRELFVPYGTVVE 143
                 +V+ K ++++ A +R+    P       K+FVG L D+    ++ E F  +G + +
Sbjct:    69 -RPHVVDGKNVEVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEK 127

Query:   144 CDIV 147
              +++
Sbjct:   128 SEVI 131

 Score = 110 (43.8 bits), Expect = 0.00046, P = 0.00046
 Identities = 33/132 (25%), Positives = 63/132 (47%)

Query:    71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT-----KVFVGNLSDN 125
             +GFV     EE   A+      +V+ K ++++ A +R+    P       K+FVG L D+
Sbjct:    51 FGFVTYSTSEEADAAMAA-RPHVVDGKNVEVKRAVAREDAGRPEALAKVKKIFVGGLKDD 109

Query:   126 TRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKP 176
                 ++ E F  +G + + +++        R +GFVH +  D  +K +  L   M++G  
Sbjct:   110 IEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVV-LKFHMINGH- 167

Query:   177 MKVQISTSRVRQ 188
              KV++  +  +Q
Sbjct:   168 -KVEVKKALTKQ 178


>FB|FBgn0010263 [details] [associations]
            symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
            melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
            "germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
            "nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
            "oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
            evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
            HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
            ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
            InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
        Length = 444

 Score = 141 (54.7 bits), Expect = 9.6e-08, P = 9.6e-08
 Identities = 47/177 (26%), Positives = 76/177 (42%)

Query:    16 SNNQINISCRNMPGFSSVGTFKIFIGNVNPGT-SVELIRPLFEKYGKVVECDVVKN---- 70
             +NN  N +  N           + + N  P T S + IR LF  +G+V  C ++++    
Sbjct:    90 NNNNNNATANNNNNNEPDPKTNLIV-NYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTG 148

Query:    71 ----YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNT 126
                 YGFV+    E+   AI  LNG  +  K +K+  A      +     ++V  L  N 
Sbjct:   149 QSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARP-SSESIKGANLYVSGLPKNM 207

Query:   127 RAPEVRELFVPYGTVVE----CDIV---------RNYGFVHIDSP-DINKCIKELNG 169
                ++  LF PYG ++     CD +         +  GF+  D   + ++ IKELNG
Sbjct:   208 TQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264

 Score = 115 (45.5 bits), Expect = 0.00021, P = 0.00021
 Identities = 33/107 (30%), Positives = 47/107 (43%)

Query:   104 ATSRKGPNT---PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGF 152
             AT+    N    P T + V  L       E+R LFV +G V  C ++R+        YGF
Sbjct:    96 ATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGF 155

Query:   153 V-HIDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIG 198
             V ++   D  K I  LNG+ +  K +KV I+        G +  V G
Sbjct:   156 VNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSG 202


>UNIPROTKB|H0YAR2 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
            Uniprot:H0YAR2
        Length = 284

 Score = 138 (53.6 bits), Expect = 9.6e-08, P = 9.6e-08
 Identities = 40/141 (28%), Positives = 69/141 (48%)

Query:    63 VECDV--VKNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT 114
             V CD    K YGFVH E  E    AI+++NG ++N++ + +    SRK      G     
Sbjct:     2 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 61

Query:   115 -TKVFVGNLSDNTRAPEVRELFVPYGTVV----ECDIVRNYGFVHIDS-PDINKCIKELN 168
              T V++ N  ++     +++LF P  +V     E    + +GFV  +   D  K + E+N
Sbjct:    62 FTNVYIKNFGEDMDDERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 121

Query:   169 GMMVDGKPMKVQISTSRVRQR 189
             G  ++GK + V  +  +V ++
Sbjct:   122 GKELNGKQIYVGRAQKKVERQ 142


>UNIPROTKB|H7BY49 [details] [associations]
            symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
            HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
        Length = 152

 Score = 122 (48.0 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 29/120 (24%), Positives = 56/120 (46%)

Query:    39 FIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEEGRTAIKELNGQ 92
             ++GN++   +  LI  LF + G    C ++ +      Y FV          A+  +NG+
Sbjct:     2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGR 61

Query:    93 IVNEKPLKIEAATSRKGPNTPTTK---VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN 149
              +  K +K+  AT+       T+    VFVG+LS      +++  F P+G + +  +V++
Sbjct:    62 KIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD 121


>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
            symbol:hnrnpa0a "heterogeneous nuclear
            ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
            EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
            ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
            GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
            NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
        Length = 305

 Score = 138 (53.6 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 33/124 (26%), Positives = 66/124 (53%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+F+G +N  T+ + +R  FE+YGK+ +C VV+N        +GFV   + +E  +A+  
Sbjct:    11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70

Query:    89 LNGQIVNEKPLKIEAATSRKGPNTPTT-----KVFVGNLSDNTRAPEVRELFVPYGTVVE 143
                 I++   ++++ A +R+    P       K+F+G L D+     +R+ F  +G V +
Sbjct:    71 -RPHILDGNNVELKRAVAREDAGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVEK 129

Query:   144 CDIV 147
              +++
Sbjct:   130 AEVI 133


>TAIR|locus:2131864 [details] [associations]
            symbol:RS40 "arginine/serine-rich splicing factor 40"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
            [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=ISS;RCA] [GO:0005681
            "spliceosomal complex" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166 GO:GO:0016607
            Gene3D:3.30.70.330 GO:GO:0005681 EMBL:AL022197 GO:GO:0003723
            GO:GO:0000398 HOGENOM:HOG000276234 KO:K12893 EMBL:X99437
            EMBL:U76607 IPI:IPI00520315 PIR:T05797 RefSeq:NP_001190837.1
            RefSeq:NP_194280.1 UniGene:At.10187 ProteinModelPortal:P92965
            SMR:P92965 IntAct:P92965 STRING:P92965 PaxDb:P92965 PRIDE:P92965
            EnsemblPlants:AT4G25500.1 EnsemblPlants:AT4G25500.4 GeneID:828654
            KEGG:ath:AT4G25500 TAIR:At4g25500 eggNOG:NOG298768
            InParanoid:P92965 OMA:KRERMSP PhylomeDB:P92965
            ProtClustDB:CLSN2685694 Genevestigator:P92965 Uniprot:P92965
        Length = 350

 Score = 92 (37.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 23/74 (31%), Positives = 36/74 (48%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNEK 97
             +F GN         +  LF KYGKV   D+   + FV+ME++ +   AI+ L+      K
Sbjct:     4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63

Query:    98 P--LKIEAATSRKG 109
                L++E   S +G
Sbjct:    64 GRRLRVEWTKSERG 77

 Score = 92 (37.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 23/79 (29%), Positives = 42/79 (53%)

Query:   106 SRKGPNT--PTTKVFVGNL-SDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DIN 161
             SR+  ++  P+  +FV N  +DNTR  ++ + F PYG +V   I RN+ F+  ++  D  
Sbjct:    86 SRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDAT 145

Query:   162 KCIKELNGMMVDGKPMKVQ 180
             + +   N   +  K + V+
Sbjct:   146 RALDASNNSKLMDKVISVE 164


>UNIPROTKB|Q5ZME1 [details] [associations]
            symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
            evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
            GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
            EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
            UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
            Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
            InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
        Length = 349

 Score = 139 (54.0 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 42/170 (24%), Positives = 84/170 (49%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+FIG ++  T+ E +R  +E++GK+ +C V+++        +GFV   +  E   A+  
Sbjct:    18 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 77

Query:    89 ----LNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                 ++G++V  K       + + G +    K+FVG + ++T    +R+ F  YG +   
Sbjct:    78 RPHTIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 137

Query:   145 DIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
             +I+        R +GFV  D  D ++K + +     ++G   +V+ + SR
Sbjct:   138 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ-KYHTINGHNAEVRKALSR 186


>DICTYBASE|DDB_G0280393 [details] [associations]
            symbol:DDB_G0280393 "CCHC-type zinc finger-containing
            protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
            ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0280393 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AAFI02000035 Gene3D:4.10.60.10 SUPFAM:SSF57756
            ProtClustDB:CLSZ2846809 RefSeq:XP_641373.1
            ProteinModelPortal:Q54VI2 PRIDE:Q54VI2 EnsemblProtists:DDB0233308
            GeneID:8622507 KEGG:ddi:DDB_G0280393 eggNOG:NOG242322
            InParanoid:Q54VI2 OMA:PRERHTE Uniprot:Q54VI2
        Length = 412

 Score = 140 (54.3 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 27/83 (32%), Positives = 51/83 (61%)

Query:    30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKEL 89
             FS +   ++++G ++  T+ E +   F K+GKV+ CDV   Y FV  +N++  R AI+E+
Sbjct:   169 FSLLAERRVYVGRISNKTTRESLEDSFLKFGKVLSCDVKNGYAFVEFDNEKSARDAIEEM 228

Query:    90 NGQIVNEKPLKIEAATS-RKGPN 111
             +  IV+ + + +E + S +K P+
Sbjct:   229 HDSIVDGEKILVEKSHSGKKHPD 251

 Score = 113 (44.8 bits), Expect = 0.00032, P = 0.00032
 Identities = 26/83 (31%), Positives = 46/83 (55%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 174
             +V+VG +S+ T    + + F+ +G V+ CD+   Y FV  D+       I+E++  +VDG
Sbjct:   176 RVYVGRISNKTTRESLEDSFLKFGKVLSCDVKNGYAFVEFDNEKSARDAIEEMHDSIVDG 235

Query:   175 KPMKVQISTSRVRQRPGVDEVVI 197
             + + V+ S S  ++ P  DE  I
Sbjct:   236 EKILVEKSHSG-KKHP--DECFI 255


>UNIPROTKB|Q5QPM2 [details] [associations]
            symbol:RALY "RNA-binding protein Raly" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL031668
            UniGene:Hs.136947 HGNC:HGNC:15921 ChiTaRS:RALY EMBL:AL034549
            IPI:IPI00640938 SMR:Q5QPM2 MINT:MINT-1399328 STRING:Q5QPM2
            Ensembl:ENST00000413297 Uniprot:Q5QPM2
        Length = 89

 Score = 121 (47.7 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 27/82 (32%), Positives = 45/82 (54%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             N++ +N P   S+ + ++FIGN+N     +  +  +F KYG+V  C V K Y FV   N+
Sbjct:     9 NVTNKNDP--KSINS-RVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNE 65

Query:    80 EEGRTAIKELNGQIVNEKPLKI 101
                R A+   NG+++  + L I
Sbjct:    66 RHARAAVLGENGRVLAGQTLDI 87

 Score = 97 (39.2 bits), Expect = 8.7e-05, P = 8.7e-05
 Identities = 22/87 (25%), Positives = 45/87 (51%)

Query:    99 LKIEAA--TSRKGPNTPTTKVFVGNLSDN-TRAPEVRELFVPYGTVVECDIVRNYGFVHI 155
             LK++A+  T++  P +  ++VF+GNL+    +  +V  +F  YG V  C + + Y FV  
Sbjct:     3 LKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQY 62

Query:   156 DSP-DINKCIKELNGMMVDGKPMKVQI 181
              +       +   NG ++ G+ + + +
Sbjct:    63 SNERHARAAVLGENGRVLAGQTLDINM 89


>WB|WBGene00001999 [details] [associations]
            symbol:hrp-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] [GO:0040015 "negative regulation of
            multicellular organism growth" evidence=IMP] [GO:0048477
            "oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0000781 "chromosome, telomeric region" evidence=IDA]
            [GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
            GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
            GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
            GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
            EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
            RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
            UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
            STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
            EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
            UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
            WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
            NextBio:895332 Uniprot:Q22037
        Length = 346

 Score = 138 (53.6 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 45/190 (23%), Positives = 89/190 (46%)

Query:    20 INISCRNMPGFSSV---GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------ 70
             + I   N  G +S+      KIF+G +   T+ +L+R  + ++G++ +  V+++      
Sbjct:     4 VEIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRS 63

Query:    71 --YGFVHMENDEEGRTAIKE----LNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSD 124
               +GFV      E   A+K+    ++G+ V+ K        +R   N  T +++V  + +
Sbjct:    64 RGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVRE 123

Query:   125 NTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGK 175
             +     + E F  YGTV + +I+        R +GFV  D  D +++C+ +    MV+G 
Sbjct:   124 DHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ-KSHMVNGH 182

Query:   176 PMKVQISTSR 185
                V+   S+
Sbjct:   183 RCDVRKGLSK 192


>TAIR|locus:504955752 [details] [associations]
            symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
            KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
            EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
            ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
            EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
            TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
            ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
        Length = 358

 Score = 138 (53.6 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 43/173 (24%), Positives = 82/173 (47%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             KIFIG ++  T+  +    F KYG++ +  ++++        +GF+   +       I++
Sbjct:    20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79

Query:    89 ---LNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
                +NG+ V  K    + A   +  +  T K+FVG +       E+++ F  YG VVE  
Sbjct:    80 THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQ 139

Query:   146 IVRN--------YGFVHIDSPDINKCIKEL--NGMMVDGKPMKVQISTSRVRQ 188
             ++R+        +GFV  DS ++   + EL   G M+D    +V+I  +  ++
Sbjct:   140 VIRDHETNRSRGFGFVIFDSEEV---VDELLSKGNMIDMADTQVEIKKAEPKK 189


>TAIR|locus:2018794 [details] [associations]
            symbol:UBP1B "oligouridylate binding protein 1B"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
            HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
            EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
            UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
            PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
            KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
            PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
        Length = 419

 Score = 139 (54.0 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 54/214 (25%), Positives = 93/214 (43%)

Query:     6 QQQLVKVSRYSNNQIN-ISCRNMP-GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVV 63
             QQ L      +  QI  I   N+P GF       +++GN++   +  L++ +F   G V 
Sbjct:    22 QQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVE 81

Query:    64 ECDVVK----NYGFVHMENDEEGRTAIKELNGQIVNEKPLKIE-AATSRKGPNTPTT-KV 117
              C +++    +YGFVH  +      AI  LNG+ +  +P+K+  A  S +  +T +   +
Sbjct:    82 SCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNI 141

Query:   118 FVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELN 168
             FVG+LS       +   F  Y T  +  ++        R +GFV   +  D    I E+ 
Sbjct:   142 FVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEIT 201

Query:   169 GMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKSV 202
             G  +  + ++   +T       G D+     KSV
Sbjct:   202 GKWLGSRQIRCNWATKGATS--GEDKQSSDSKSV 233


>TAIR|locus:2015403 [details] [associations]
            symbol:RBP47C "RNA-binding protein 47C" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
            eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
            UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
            EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
            IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
            ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
            EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
            TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
            Genevestigator:Q9SX79 Uniprot:Q9SX79
        Length = 432

 Score = 102 (41.0 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
 Identities = 28/80 (35%), Positives = 41/80 (51%)

Query:    38 IFIGNVNPGTSVELIRPLF-EKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKE 88
             IF+G+++P  S  L+   F EKY  V    VV        K YGFV   ++ E   A+ E
Sbjct:   199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258

Query:    89 LNGQIVNEKPLKIEAATSRK 108
             +NG   + + ++I  AT RK
Sbjct:   259 MNGVKCSSRAMRIGPATPRK 278

 Score = 81 (33.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
 Identities = 21/74 (28%), Positives = 41/74 (55%)

Query:   115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVH-IDSPDINKCIKELNGMM 171
             T +FVG L  +    ++++ F  +G +V   I   +  GFV  ++ P+  + +++LNG +
Sbjct:   304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTV 363

Query:   172 VDGKPMKVQISTSR 185
             + GK   V++S  R
Sbjct:   364 I-GK-QTVRLSWGR 375


>ZFIN|ZDB-GENE-000501-2 [details] [associations]
            symbol:celf3a "cugbp, Elav-like family member 3a"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
            eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
            EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
            RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
            SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
            CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
            Bgee:Q9IBD1 Uniprot:Q9IBD1
        Length = 452

 Score = 127 (49.8 bits), Expect = 7.3e-06, P = 7.3e-06
 Identities = 34/124 (27%), Positives = 65/124 (52%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-YGFVHM----------ENDEEGRTA 85
             K+FIG +      + ++P+FE++GK+ E  V+K+ Y  +H           E+  + + A
Sbjct:     8 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNA 67

Query:    86 IKELNGQIVNEKPLKIEAATSR-KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
             + E        +P++++ A S  +G      K+FVG L       +VR++F P+G++ EC
Sbjct:    68 LHEQKTLPGMNRPIQVKPADSEGRGDR----KLFVGMLGKQLSDADVRKMFEPFGSIEEC 123

Query:   145 DIVR 148
              ++R
Sbjct:   124 TVLR 127

 Score = 104 (41.7 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 28/107 (26%), Positives = 51/107 (47%)

Query:    93 IVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC----DIVR 148
             +V ++P + +    R+GP      +F+ +L       E+ ++F+P+G V+      D   
Sbjct:   347 LVAQQPQQPQQLQQREGPEG--CNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRAT 404

Query:   149 N----YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRP 190
             N    +GFV  D+P      I+ +NG  +  K +KVQ+   +   RP
Sbjct:   405 NQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRP 451

 Score = 79 (32.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 20/65 (30%), Positives = 33/65 (50%)

Query:    34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAI 86
             G  K+F+G +    S   +R +FE +G + EC V+       K   FV  +++ E + AI
Sbjct:    92 GDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPDGASKGCAFVKYQSNAEAQAAI 151

Query:    87 KELNG 91
               L+G
Sbjct:   152 SALHG 156


>UNIPROTKB|Q01085 [details] [associations]
            symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
            "apoptotic process" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
            "defense response" evidence=TAS] [GO:0005764 "lysosome"
            evidence=TAS] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
            apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
            GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
            GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
            HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
            EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
            RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
            PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
            ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
            MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
            PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
            Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
            CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
            neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
            ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
            NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
            Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
        Length = 375

 Score = 138 (53.6 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 38/166 (22%), Positives = 74/166 (44%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEEGRTAIKELNG 91
             +++GN++   +  LI  LF + G    C ++        Y FV      +   A+  +NG
Sbjct:    11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG 70

Query:    92 QIVNEKPLKIEAATSRKGPNTPTTK---VFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
             + +  K +K+  AT+       T+    VFVG+LS      +++  F P+G + +  +V+
Sbjct:    71 RKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVK 130

Query:   149 N--------YGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSR 185
             +        YGFV   +  D    I  + G  + G+ ++   +T +
Sbjct:   131 DMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176


>SGD|S000005483 [details] [associations]
            symbol:HRP1 "Subunit of cleavage factor I" species:4932
            "Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
            [GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
            [GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
            binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
            catabolic process, nonsense-mediated decay" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
            EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
            GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
            EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
            RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
            ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
            MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
            EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
            HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
            EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
            GermOnline:YOL123W Uniprot:Q99383
        Length = 534

 Score = 140 (54.3 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 44/167 (26%), Positives = 78/167 (46%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+FIG +N  T+ + +R  F KYG V +  ++K+        +GF+  E        +K 
Sbjct:   160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219

Query:    89 LNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
              +  I++ K +  + A  R   +  T K+FVG +  + R  E  E F  +GT+++  ++ 
Sbjct:   220 QH--ILDGKVIDPKRAIPRDEQDK-TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLML 276

Query:   148 -------RNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQISTSRVR 187
                    R +GFV  DS D    + +     +D K  K++I  +  R
Sbjct:   277 DKDTGQSRGFGFVTYDSADAVDRVCQ--NKFIDFKDRKIEIKRAEPR 321


>WB|WBGene00003903 [details] [associations]
            symbol:pab-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0009792 "embryo development ending in
            birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
            GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
            GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
            RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
            STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
            EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
            EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
            UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
            OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
        Length = 692

 Score = 141 (54.7 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 41/176 (23%), Positives = 80/176 (45%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDE 80
             P     G   IFI N++     + +   F  +G ++ C V        K YGFVH E + 
Sbjct:   137 PAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEH 196

Query:    81 EGRTAIKELNGQIVNEKPL---KIEAATSRK---GPN-TPTTKVFVGNLSDNTRAPEVRE 133
               +TAI+++NG ++++K +   K +    R    G +    T VFV N  ++    ++  
Sbjct:   197 SAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSA 256

Query:   134 LFVPYGTVVECDIV-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQI 181
             +F  +G +    ++       + +GFV     D   + +++LN  +++G   K+ +
Sbjct:   257 MFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSV 312

 Score = 120 (47.3 bits), Expect = 9.9e-05, P = 9.9e-05
 Identities = 34/161 (21%), Positives = 75/161 (46%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
             ++IG+++P  S  ++   F   G V+   V ++        Y +V+ +   +   A+  +
Sbjct:    59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118

Query:    90 NGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
             N ++++ +P++I    S++ P         +F+ NL        V + F  +G ++ C +
Sbjct:   119 NFEVIHGRPMRI--MWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKV 176

Query:   147 V-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 179
                     + YGFVH ++       I+++NGM++  K + V
Sbjct:   177 ATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217


>UNIPROTKB|F2Z4H8 [details] [associations]
            symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=IEA] [GO:0008284 "positive regulation of
            cell proliferation" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
            GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
            EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
            UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
            Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
            NextBio:20899153 Uniprot:F2Z4H8
        Length = 380

 Score = 138 (53.6 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 38/166 (22%), Positives = 74/166 (44%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEEGRTAIKELNG 91
             +++GN++   +  LI  LF + G    C ++        Y FV      +   A+  +NG
Sbjct:    11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG 70

Query:    92 QIVNEKPLKIEAATSRKGPNTPTTK---VFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 148
             + +  K +K+  AT+       T+    VFVG+LS      +++  F P+G + +  +V+
Sbjct:    71 RKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVK 130

Query:   149 N--------YGFVHI-DSPDINKCIKELNGMMVDGKPMKVQISTSR 185
             +        YGFV   +  D    I  + G  + G+ ++   +T +
Sbjct:   131 DMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176


>UNIPROTKB|Q08DJ0 [details] [associations]
            symbol:RALYL "RNA-binding Raly-like protein" species:9913
            "Bos taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG250746
            HOGENOM:HOG000231958 HOVERGEN:HBG002302 InterPro:IPR017347
            PIRSF:PIRSF037992 EMBL:BC123721 IPI:IPI00701678
            RefSeq:NP_001071400.1 UniGene:Bt.51837 ProteinModelPortal:Q08DJ0
            SMR:Q08DJ0 PRIDE:Q08DJ0 GeneID:516989 KEGG:bta:516989 CTD:138046
            InParanoid:Q08DJ0 OrthoDB:EOG40CHJ0 NextBio:20872347 Uniprot:Q08DJ0
        Length = 293

 Score = 136 (52.9 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 33/94 (35%), Positives = 51/94 (54%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             N++ +N P   S+ + ++FIGN+N     ++ I  +F KYGK+V C V K Y FV   ++
Sbjct:     9 NVTNKNDP--KSINS-RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSE 65

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP 113
                R A+   N +I+  +PL I  A   K P  P
Sbjct:    66 RHARAAVAGENARIIAGQPLDINMAGEPK-PYRP 98


>MGI|MGI:1924147 [details] [associations]
            symbol:Ralyl "RALY RNA binding protein-like" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1924147 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:NOG250746 HOGENOM:HOG000231958
            HOVERGEN:HBG002302 InterPro:IPR017347 PIRSF:PIRSF037992
            GeneTree:ENSGT00390000006718 CTD:138046 OrthoDB:EOG40CHJ0
            HSSP:Q9UKM9 EMBL:AK032086 EMBL:AK038465 EMBL:AK079659 EMBL:BC052358
            IPI:IPI00310432 IPI:IPI00473187 RefSeq:NP_001156800.1
            RefSeq:NP_001156801.1 RefSeq:NP_001156802.1 RefSeq:NP_848746.1
            UniGene:Mm.422625 ProteinModelPortal:Q8BTF8 SMR:Q8BTF8
            PhosphoSite:Q8BTF8 PaxDb:Q8BTF8 PRIDE:Q8BTF8
            Ensembl:ENSMUST00000108372 GeneID:76897 KEGG:mmu:76897
            UCSC:uc008oqb.2 UCSC:uc008oqf.2 InParanoid:Q8BTF8 OMA:CISENAD
            NextBio:346035 Bgee:Q8BTF8 CleanEx:MM_RALYL Genevestigator:Q8BTF8
            Uniprot:Q8BTF8
        Length = 293

 Score = 136 (52.9 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 33/94 (35%), Positives = 51/94 (54%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             NI+ +N P   S+ + ++FIGN+N     ++ I  +F KYGK+V C V K Y FV   ++
Sbjct:     9 NITNKNDP--KSINS-RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSE 65

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP 113
                R A+   N +++  +PL I  A   K P  P
Sbjct:    66 RHARAAVAGENARVIAGQPLDINMAGEPK-PYRP 98


>UNIPROTKB|Q6K271 [details] [associations]
            symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
            Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
            "regulation of flower development" evidence=ISS] [GO:0044428
            "nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
            PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
            SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
            Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
            EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
            EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
        Length = 738

 Score = 141 (54.7 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 43/126 (34%), Positives = 67/126 (53%)

Query:    37 KIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKN------YG--FVHMENDEEGRTAIK 87
             K+FIG+V P T+ E  +RPLFE++G VVE  ++K+       G  FV     EE   AI+
Sbjct:   123 KLFIGSV-PRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIR 181

Query:    88 ELNGQIVNEK---PLKIEAATS-RKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
              L+ Q        P+++  A   R+       K+FV +L+    A E+ E+F PYG V +
Sbjct:   182 ALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVED 241

Query:   144 CDIVRN 149
               I+++
Sbjct:   242 VYIMKD 247


>UNIPROTKB|Q6WQT6 [details] [associations]
            symbol:Q6WQT6 "Flowering time control protein isoform
            OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0009909 "regulation of flower
            development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
            PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
            GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
            SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
            ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
            Uniprot:Q6WQT6
        Length = 738

 Score = 141 (54.7 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 43/126 (34%), Positives = 67/126 (53%)

Query:    37 KIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKN------YG--FVHMENDEEGRTAIK 87
             K+FIG+V P T+ E  +RPLFE++G VVE  ++K+       G  FV     EE   AI+
Sbjct:   123 KLFIGSV-PRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIR 181

Query:    88 ELNGQIVNEK---PLKIEAATS-RKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
              L+ Q        P+++  A   R+       K+FV +L+    A E+ E+F PYG V +
Sbjct:   182 ALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVED 241

Query:   144 CDIVRN 149
               I+++
Sbjct:   242 VYIMKD 247


>CGD|CAL0005232 [details] [associations]
            symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
            eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
            ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
            GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
            Uniprot:Q5AB84
        Length = 400

 Score = 138 (53.6 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 36/141 (25%), Positives = 67/141 (47%)

Query:    69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR----KGPNT-----------P 113
             + YG+V  E+      A++E+ G+ ++ +P+ ++ +T +    K  N            P
Sbjct:   209 RGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPP 268

Query:   114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDINKCIK 165
             +  +F+GNLS N     +  +F  YG V+ C +         + +G+V   S D  K   
Sbjct:   269 SDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAAL 328

Query:   166 E-LNGMMVDGKPMKVQISTSR 185
             E +NG  ++G+P ++  ST R
Sbjct:   329 EAMNGEYIEGRPCRLDFSTPR 349


>UNIPROTKB|Q5AB84 [details] [associations]
            symbol:NSR1 "Potential nuclear localization sequence
            binding protein Nsr1p" species:237561 "Candida albicans SC5314"
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
            EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
            RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
            STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
            KEGG:cal:CaO19.6090 Uniprot:Q5AB84
        Length = 400

 Score = 138 (53.6 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 36/141 (25%), Positives = 67/141 (47%)

Query:    69 KNYGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR----KGPNT-----------P 113
             + YG+V  E+      A++E+ G+ ++ +P+ ++ +T +    K  N            P
Sbjct:   209 RGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPP 268

Query:   114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDINKCIK 165
             +  +F+GNLS N     +  +F  YG V+ C +         + +G+V   S D  K   
Sbjct:   269 SDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAAL 328

Query:   166 E-LNGMMVDGKPMKVQISTSR 185
             E +NG  ++G+P ++  ST R
Sbjct:   329 EAMNGEYIEGRPCRLDFSTPR 349


>RGD|1310403 [details] [associations]
            symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
            evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
            [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
            "single-stranded telomeric DNA binding" evidence=IEA;ISO]
            [GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
            evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
            [GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
            eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
            CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
            EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
            IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
            ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
            GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
            InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
            Genevestigator:A7VJC2 Uniprot:A7VJC2
        Length = 353

 Score = 137 (53.3 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 42/170 (24%), Positives = 83/170 (48%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG ++  T+ E +R  +E++GK+ +C V+++        +GFV   +  E   A+  
Sbjct:    22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                 ++G++V  K       + + G +    K+FVG + ++T    +R+ F  YG +   
Sbjct:    82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141

Query:   145 DIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
             +I+        R +GFV  D  D ++K   +     ++G   +V+ + SR
Sbjct:   142 EIITDRQSGKKRGFGFVTFDDHDPVDKIFLQ-KYHTINGHNAEVRKALSR 190


>DICTYBASE|DDB_G0290745 [details] [associations]
            symbol:pabpc1B "putative polyadenylate binding
            protein (PABP)" species:44689 "Dictyostelium discoideum"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
            [GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
            GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
            GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
            EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
            OMA:NAIASIH Uniprot:Q1ZXC2
        Length = 814

 Score = 141 (54.7 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 42/150 (28%), Positives = 74/150 (49%)

Query:    71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKV---FVGNLSDNTR 127
             Y +V+  N+ +   A+  LN  +V+ KP +I    S + P    T V   FV NL     
Sbjct:   229 YAYVNFFNNHDAERALDTLNYTLVHGKPCRI--MWSYRDPTKRKTNVGNIFVKNLEKGVD 286

Query:   128 APEVRELFVPYGTVVECD------IVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQ 180
                + + F  +G ++ C       I + YG+VH ++ D   K I+++NG ++ GKP+ V+
Sbjct:   287 NAMLYDTFSSFGNILSCKVEFEKGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVE 346

Query:   181 ISTSRVRQRPGVDEVVI---GQKSVPVQAL 207
                S+V +R  V+  V      +S+ ++ L
Sbjct:   347 RFVSKV-ERYKVENKVFFRNADESITIEIL 375

 Score = 138 (53.6 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 36/127 (28%), Positives = 64/127 (50%)

Query:    31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRT 84
             ++VG   IF+ N+  G    ++   F  +G ++ C V       K YG+VH E ++    
Sbjct:   271 TNVGN--IFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEKGISKGYGYVHFETNDSAEK 328

Query:    85 AIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEV--RELFVPYGTVV 142
             AI+++NG ++  KP+ +E   S+        KVF  N +D +   E+  +EL   +G + 
Sbjct:   329 AIEKVNGTLILGKPINVERFVSKVERYKVENKVFFRN-ADESITIEILQQELSNRFGEIE 387

Query:   143 ECDIVRN 149
              C I++N
Sbjct:   388 SC-ILKN 393


>ZFIN|ZDB-GENE-040426-2043 [details] [associations]
            symbol:hnrnpc "heterogeneous nuclear
            ribonucleoprotein C" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2043
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000231958
            HOVERGEN:HBG002302 InterPro:IPR017347 PIRSF:PIRSF037992 CTD:3183
            GeneTree:ENSGT00390000006718 EMBL:CR376839 EMBL:BC044458
            EMBL:BC097078 IPI:IPI00868250 RefSeq:NP_998244.1 UniGene:Dr.20495
            SMR:Q803J4 Ensembl:ENSDART00000075905 GeneID:406352 KEGG:dre:406352
            InParanoid:Q803J4 OMA:KNDNSEE NextBio:20817970 Uniprot:Q803J4
        Length = 313

 Score = 136 (52.9 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 30/96 (31%), Positives = 52/96 (54%)

Query:    37 KIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
             ++FIGN+N     +  +  +F KYGK+V C V K Y FV    +   RTA++  +G++V 
Sbjct:    27 RVFIGNLNTMLVTKADVEAIFSKYGKIVGCSVHKGYAFVQFAQERNARTAVQGEDGRMVV 86

Query:    96 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEV 131
              + L +  A   K   + TTK   G++  ++ + E+
Sbjct:    87 GQVLDVNLAGEPKPHRSKTTKRSAGDMYSSSSSFEL 122


>UNIPROTKB|B3KT61 [details] [associations]
            symbol:RALYL "cDNA FLJ37707 fis, clone BRHIP2017642,
            moderately similar to RNA-binding protein Raly" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000231958
            HOVERGEN:HBG002302 InterPro:IPR017347 PIRSF:PIRSF037992 CTD:138046
            RefSeq:NP_776247.3 UniGene:Hs.121663 DNASU:138046 GeneID:138046
            KEGG:hsa:138046 HGNC:HGNC:27036 PharmGKB:PA162400636 ChiTaRS:RALYL
            GenomeRNAi:138046 NextBio:83725 EMBL:AC009901 EMBL:AC012400
            EMBL:AC027043 EMBL:AC087368 EMBL:AC092699 EMBL:AC092709
            EMBL:AC103816 EMBL:AK095026 IPI:IPI01013944 SMR:B3KT61
            STRING:B3KT61 Ensembl:ENST00000518566 UCSC:uc010lzy.3
            Uniprot:B3KT61
        Length = 280

 Score = 135 (52.6 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 32/94 (34%), Positives = 51/94 (54%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             N++ +N P   S+ + ++FIGN+N     ++ I  +F KYGK+V C V K Y FV   ++
Sbjct:     9 NVTNKNDP--KSINS-RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSE 65

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP 113
                R A+   N +++  +PL I  A   K P  P
Sbjct:    66 RHARAAVAGENARVIAGQPLDINMAGEPK-PYRP 98


>UNIPROTKB|Q5E952 [details] [associations]
            symbol:RALY "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
            HOGENOM:HOG000231958 HOVERGEN:HBG002302 InterPro:IPR017347
            PIRSF:PIRSF037992 GeneTree:ENSGT00390000006718 CTD:22913 KO:K12895
            OMA:QTRDDGD EMBL:DAAA02036492 EMBL:BT021068 IPI:IPI00839224
            RefSeq:NP_001014847.1 UniGene:Bt.42846 SMR:Q5E952
            Ensembl:ENSBTAT00000044331 GeneID:504640 KEGG:bta:504640
            InParanoid:Q5E952 OrthoDB:EOG405S24 NextBio:20866769 Uniprot:Q5E952
        Length = 283

 Score = 135 (52.6 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 32/94 (34%), Positives = 50/94 (53%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             N++ +N P   S+ + ++FIGN+N     +  +  +F KYG+V  C V K Y FV   N+
Sbjct:     9 NVTNKNDP--KSINS-RVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANE 65

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP 113
                R A+   NG+++  + L I  A   K PN P
Sbjct:    66 RHARAAVVGENGRVLAGQTLDINMAGEPK-PNRP 98


>UNIPROTKB|E9PTI6 [details] [associations]
            symbol:Raly "Protein Raly" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1307228 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR017347 PIRSF:PIRSF037992 GeneTree:ENSGT00390000006718
            IPI:IPI00373147 Ensembl:ENSRNOT00000023429 Uniprot:E9PTI6
        Length = 285

 Score = 135 (52.6 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 32/94 (34%), Positives = 50/94 (53%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             N++ +N P   S+ + ++FIGN+N     +  +  +F KYG+V  C V K Y FV   N+
Sbjct:     9 NVTNKNDP--KSINS-RVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANE 65

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP 113
                R A+   NG+++  + L I  A   K PN P
Sbjct:    66 RHARAAVLGENGRVLAGQTLDINMAGEPK-PNRP 98


>UNIPROTKB|D4A491 [details] [associations]
            symbol:D4A491 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
            IPI:IPI00560785 ProteinModelPortal:D4A491
            Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
        Length = 239

 Score = 133 (51.9 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 47/176 (26%), Positives = 82/176 (46%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG ++  T+ E +R  FE++G + +C V+++        +GFV     EE   A+  
Sbjct:     8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                ++NG++V  K       + R        K+FVG + ++T    +R+ F  YG     
Sbjct:    68 RPHKVNGRVVEPKRAVSREDSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKTEVI 127

Query:   145 DIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSRVRQRPG 191
             +IV        R + FV  D  D ++K + +     V+G   +V+ + S  R R G
Sbjct:   128 EIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQ-KYHTVNGHNCEVRKAPSNQRGRSG 182


>UNIPROTKB|Q86SE5 [details] [associations]
            symbol:RALYL "RNA-binding Raly-like protein" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG250746
            HOGENOM:HOG000231958 HOVERGEN:HBG002302 InterPro:IPR017347
            PIRSF:PIRSF037992 CTD:138046 OrthoDB:EOG40CHJ0 EMBL:AF495529
            EMBL:AF495530 EMBL:AK095560 EMBL:AK123437 EMBL:BC031090
            IPI:IPI00166137 IPI:IPI00980380 RefSeq:NP_001093861.1
            RefSeq:NP_001093862.1 RefSeq:NP_001093863.1 RefSeq:NP_776247.3
            UniGene:Hs.121663 HSSP:Q9UKM9 ProteinModelPortal:Q86SE5 SMR:Q86SE5
            IntAct:Q86SE5 MINT:MINT-1439633 STRING:Q86SE5 DMDM:158564044
            PRIDE:Q86SE5 DNASU:138046 Ensembl:ENST00000521268
            Ensembl:ENST00000521695 Ensembl:ENST00000522455
            Ensembl:ENST00000523850 GeneID:138046 KEGG:hsa:138046
            UCSC:uc003ycq.4 UCSC:uc003ycu.4 GeneCards:GC08P085095
            HGNC:HGNC:27036 MIM:614648 neXtProt:NX_Q86SE5 PharmGKB:PA162400636
            InParanoid:Q86SE5 ChiTaRS:RALYL GenomeRNAi:138046 NextBio:83725
            ArrayExpress:Q86SE5 Bgee:Q86SE5 CleanEx:HS_RALYL
            Genevestigator:Q86SE5 Uniprot:Q86SE5
        Length = 291

 Score = 135 (52.6 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 32/94 (34%), Positives = 51/94 (54%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             N++ +N P   S+ + ++FIGN+N     ++ I  +F KYGK+V C V K Y FV   ++
Sbjct:     9 NVTNKNDP--KSINS-RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSE 65

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP 113
                R A+   N +++  +PL I  A   K P  P
Sbjct:    66 RHARAAVAGENARVIAGQPLDINMAGEPK-PYRP 98


>UNIPROTKB|E2R552 [details] [associations]
            symbol:RALY "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
            InterPro:IPR017347 PIRSF:PIRSF037992 GeneTree:ENSGT00390000006718
            CTD:22913 KO:K12895 OMA:QTRDDGD EMBL:AAEX03013901
            RefSeq:XP_542969.2 ProteinModelPortal:E2R552
            Ensembl:ENSCAFT00000039408 GeneID:485845 KEGG:cfa:485845
            NextBio:20859748 Uniprot:E2R552
        Length = 293

 Score = 135 (52.6 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 32/94 (34%), Positives = 50/94 (53%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             N++ +N P   S+ + ++FIGN+N     +  +  +F KYG+V  C V K Y FV   N+
Sbjct:     9 NVTNKNDP--KSINS-RVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANE 65

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP 113
                R A+   NG+++  + L I  A   K PN P
Sbjct:    66 RHARAAVLGENGRVLAGQTLDINMAGEPK-PNRP 98


>RGD|1307228 [details] [associations]
            symbol:Raly "RNA binding protein, autoantigenic
            (hnRNP-associated with lethal yellow homolog (mouse))"
            species:10116 "Rattus norvegicus" [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307228
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474050
            eggNOG:NOG250746 HOGENOM:HOG000231958 HOVERGEN:HBG002302
            InterPro:IPR017347 PIRSF:PIRSF037992 CTD:22913 KO:K12895
            IPI:IPI00373147 EMBL:BC087074 RefSeq:NP_001011958.1
            UniGene:Rn.162714 SMR:Q5PQR0 GeneID:296301 KEGG:rno:296301
            UCSC:RGD:1307228 NextBio:640965 Genevestigator:Q5PQR0
            Uniprot:Q5PQR0
        Length = 295

 Score = 135 (52.6 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 32/94 (34%), Positives = 50/94 (53%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             N++ +N P   S+ + ++FIGN+N     +  +  +F KYG+V  C V K Y FV   N+
Sbjct:     9 NVTNKNDP--KSINS-RVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANE 65

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP 113
                R A+   NG+++  + L I  A   K PN P
Sbjct:    66 RHARAAVLGENGRVLAGQTLDINMAGEPK-PNRP 98


>SGD|S000001919 [details] [associations]
            symbol:PES4 "Poly(A) binding protein, suppressor of DNA
            polymerase epsilon mutation" species:4932 "Saccharomyces
            cerevisiae" [GO:0003674 "molecular_function" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000001919
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:D50617
            EMBL:BK006940 GO:GO:0003723 eggNOG:NOG271400
            GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
            EMBL:D26442 PIR:S56278 RefSeq:NP_116678.1 ProteinModelPortal:P39684
            SMR:P39684 STRING:P39684 EnsemblFungi:YFR023W GeneID:850579
            KEGG:sce:YFR023W CYGD:YFR023w OMA:DDCGRSK NextBio:966406
            Genevestigator:P39684 GermOnline:YFR023W Uniprot:P39684
        Length = 611

 Score = 139 (54.0 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 56/199 (28%), Positives = 87/199 (43%)

Query:    14 RYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE---C--DVV 68
             R +NN+       +  F S     +FIG+++   + E ++ +F+KY   V    C   V 
Sbjct:    69 RINNNKSGHKNGKLKSFESKKLVPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVT 128

Query:    69 KN---YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGN 121
             K    +G+++ E+ EE   A++ELN   VN K ++I  +    T RK   T    VF  N
Sbjct:   129 KKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTTFRKNFGT---NVFFSN 185

Query:   122 LSDNTRAPEVR---ELFVPYGTVVEC--DIVRNYGFVHI-DSPDINKCIKELNGMMVDGK 175
             L  N      R   + F  YG ++ C  D  ++ GFV+  D       IK  N     GK
Sbjct:   186 LPLNNPLLTTRVFYDTFSRYGKILSCKLDSRKDIGFVYFEDEKTARNVIKMYNNTSFFGK 245

Query:   176 PMKVQISTSR-VRQRPGVD 193
              +   I   + VR  P  +
Sbjct:   246 KILCGIHFDKEVRSVPNFE 264


>UNIPROTKB|F1RX74 [details] [associations]
            symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
            GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
            EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
        Length = 353

 Score = 136 (52.9 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 42/170 (24%), Positives = 83/170 (48%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG ++  T+ E +R  +E++GK+ +C V+++        +GFV   +  E   A+  
Sbjct:    22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                 ++G++V  K       + + G +    K+FVG + ++T    +R+ F  YG V   
Sbjct:    82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTI 141

Query:   145 DIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVQISTSR 185
             +I+        R +GF   D  D ++K + +     ++G   +V+ + SR
Sbjct:   142 EIITDRQSGKKRGFGFFTFDDHDPVDKIVLQ-KYHTINGHNAEVRKALSR 190


>ZFIN|ZDB-GENE-041010-127 [details] [associations]
            symbol:raly "RNA binding protein, autoantigenic
            (hnRNP-associated with lethal yellow homolog (mouse))" species:7955
            "Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-041010-127 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HOVERGEN:HBG002302 InterPro:IPR017347
            PIRSF:PIRSF037992 CTD:22913 KO:K12895 EMBL:AY398405 IPI:IPI00491006
            RefSeq:NP_991173.1 UniGene:Dr.133570 ProteinModelPortal:Q6TGV1
            SMR:Q6TGV1 GeneID:402903 KEGG:dre:402903 InParanoid:Q6TGV1
            NextBio:20816720 ArrayExpress:Q6TGV1 Uniprot:Q6TGV1
        Length = 273

 Score = 134 (52.2 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 33/94 (35%), Positives = 51/94 (54%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             NI+ +N P   S+ + ++FIGN+N     +  +  +F KYG+V+ C V K Y FV   N+
Sbjct:     9 NITNKNDP--KSINS-RVFIGNLNTAVVKKSDVETIFSKYGRVLGCSVHKGYAFVQYANE 65

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP 113
                R A+   NG+++  + L I  A   K PN P
Sbjct:    66 RHARGAVIGENGRVLAGQTLDINMAGEPK-PNRP 98


>UNIPROTKB|G3V129 [details] [associations]
            symbol:RALYL "Putative uncharacterized protein LOC138046"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471068 InterPro:IPR017347 PIRSF:PIRSF037992 CTD:138046
            RefSeq:NP_001093861.1 UniGene:Hs.121663 GeneID:138046
            KEGG:hsa:138046 HGNC:HGNC:27036 ChiTaRS:RALYL GenomeRNAi:138046
            NextBio:83725 OMA:CISENAD EMBL:AC009901 EMBL:AC012400 EMBL:AC027043
            EMBL:AC087368 EMBL:AC092699 EMBL:AC092709 EMBL:AC103816
            ProteinModelPortal:G3V129 SMR:G3V129 PRIDE:G3V129
            Ensembl:ENST00000517638 ArrayExpress:G3V129 Bgee:G3V129
            Uniprot:G3V129
        Length = 304

 Score = 135 (52.6 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 32/94 (34%), Positives = 51/94 (54%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             N++ +N P   S+ + ++FIGN+N     ++ I  +F KYGK+V C V K Y FV   ++
Sbjct:    22 NVTNKNDP--KSINS-RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSE 78

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP 113
                R A+   N +++  +PL I  A   K P  P
Sbjct:    79 RHARAAVAGENARVIAGQPLDINMAGEPK-PYRP 111


>UNIPROTKB|F1PQV8 [details] [associations]
            symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
            GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
            EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
            Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
            Uniprot:F1PQV8
        Length = 382

 Score = 136 (52.9 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 42/177 (23%), Positives = 79/177 (44%)

Query:    34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
             G   IFI N++       +  LF  +G ++ C VV      K Y +VH ++      AI 
Sbjct:   104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIW 163

Query:    88 ELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
              +NG  +N + + +         AA  R       T VFV N  ++    +++E+F  YG
Sbjct:   164 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYG 223

Query:   140 TVVECDIVRN-------YGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQ 188
                   ++R+       +GFV  ++ +   K + +L+G  ++GK + V  +  ++ +
Sbjct:   224 PTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIER 280

 Score = 113 (44.8 bits), Expect = 0.00028, P = 0.00028
 Identities = 31/158 (19%), Positives = 74/158 (46%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYG-----KVVECDVVKN---YGFVHMENDEEGRTAIKEL 89
             +++G+++P  + +++   F   G     ++    V ++   YG+V+     +   A+  +
Sbjct:    20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79

Query:    90 NGQIVNEKPLKIE-AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 147
             N  ++N KP ++  +    +   +    +F+ NL  +     +  LF  +G ++ C +V 
Sbjct:    80 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC 139

Query:   148 -----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 179
                  + Y +VH DS    N+ I  +NG+ ++ + + V
Sbjct:   140 DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177


>UNIPROTKB|F1S4Y9 [details] [associations]
            symbol:RALY "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
            InterPro:IPR017347 PIRSF:PIRSF037992 GeneTree:ENSGT00390000006718
            OMA:QTRDDGD EMBL:CU062552 Ensembl:ENSSSCT00000007960 Uniprot:F1S4Y9
        Length = 328

 Score = 135 (52.6 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 32/94 (34%), Positives = 50/94 (53%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             N++ +N P   S+ + ++FIGN+N     +  +  +F KYG+V  C V K Y FV   N+
Sbjct:     9 NVTNKNDP--KSINS-RVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANE 65

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP 113
                R A+   NG+++  + L I  A   K PN P
Sbjct:    66 RHARAAVLGENGRVLAGQTLDINMAGEPK-PNRP 98


>TAIR|locus:2077137 [details] [associations]
            symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
            IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
            ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
            GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
            OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
            Genevestigator:Q9LZT1 Uniprot:Q9LZT1
        Length = 102

 Score = 117 (46.2 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 27/89 (30%), Positives = 50/89 (56%)

Query:   114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPD-INKCI 164
             + ++FV  LS  T    +R+LF P+G + E  ++R+        +GF+  DS D   K +
Sbjct:     6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query:   165 KELNGMMVDGKPMKVQISTSRVRQRPGVD 193
             K L+G +VDG+ + V+++ +    R G++
Sbjct:    66 KSLDGKIVDGRLIFVEVAKNAEEVRAGIN 94

 Score = 97 (39.2 bits), Expect = 8.7e-05, P = 8.7e-05
 Identities = 19/76 (25%), Positives = 46/76 (60%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKE 88
             ++F+  ++  T+ + +R LF  +G++ E  ++        K +GF+  +++++ R A+K 
Sbjct:     8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67

Query:    89 LNGQIVNEKPLKIEAA 104
             L+G+IV+ + + +E A
Sbjct:    68 LDGKIVDGRLIFVEVA 83


>UNIPROTKB|D6RF44 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
            HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
            ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
            ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
        Length = 112

 Score = 117 (46.2 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 35/116 (30%), Positives = 64/116 (55%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVEC----DVV----KNYGFVHMENDEEGRTAI--K 87
             +FIG ++  T+ + ++  F K+G+VV+C    D +    + +GFV  +  E     +  K
Sbjct:     1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60

Query:    88 E--LNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
             E  LNG++++  P + +A  +++    P  K+FVG LS +T   ++RE F  +G V
Sbjct:    61 EHKLNGKVID--PKRAKAMKTKE----PVKKIFVGGLSPDTPEEKIREYFGGFGEV 110


>DICTYBASE|DDB_G0279639 [details] [associations]
            symbol:DDB_G0279639 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
            SMART:SM00360 SMART:SM00513 dictyBase:DDB_G0279639 GO:GO:0000166
            GO:GO:0003677 Gene3D:3.30.70.330 Gene3D:1.10.720.30
            EMBL:AAFI02000032 eggNOG:NOG135032 RefSeq:XP_641568.1
            ProteinModelPortal:Q54WI5 EnsemblProtists:DDB0220678 GeneID:8622143
            KEGG:ddi:DDB_G0279639 InParanoid:Q54WI5 OMA:ENTNTNE Uniprot:Q54WI5
        Length = 1009

 Score = 140 (54.3 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 42/170 (24%), Positives = 80/170 (47%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKEL 89
             +F+GN+      E ++ +FEK+G +    ++KN        Y F+      +  TA   L
Sbjct:   402 LFVGNLGNDVGKEQLKKMFEKHGTIDRIILIKNRRTGENKGYAFIDYRTKLQASTAKSSL 461

Query:    90 NGQIVNEKPLKIEAATSRKGPNTPTTK-VFVGNLSDN-TRAPEVRELFVPYGTVVECDIV 147
                + N + L+++ A +     +  +K +FV  L  +    P +R++F P+G + +C++V
Sbjct:   462 GSIVFNRRTLRVDWAENCNTMESMHSKTIFVDRLPRSFADVPILRKVFSPFGKIKDCNVV 521

Query:   148 RNY-----GFVHIDSPDINKCIKELNGMMV-DGKPMKVQISTSRVRQRPG 191
              NY     GF  ID  ++    K    M   D K  K++++ +    +PG
Sbjct:   522 PNYYGQPRGFAFIDYNNVEDAEKAQRMMNEKDLKGYKIRVNFANP-SKPG 570


>UNIPROTKB|G5E5V7 [details] [associations]
            symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
            export" evidence=IEA] [GO:0045111 "intermediate filament
            cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
            evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
            EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
            Uniprot:G5E5V7
        Length = 319

 Score = 134 (52.2 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 42/162 (25%), Positives = 76/162 (46%)

Query:    23 SCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVH 75
             SC N          K+FIG ++  T+ E +R  FE++G + +C V+       + +GFV 
Sbjct:    10 SCLNQSPKELEQLRKLFIGGLSFETTDESLRSHFEQWGMLTDCVVMDPNTKRSRGFGFVT 69

Query:    76 MENDEEGRTAI----KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEV 131
                 EE   A+    ++++G++V  K       + R G +    K+FVG + ++T    +
Sbjct:    70 YTTVEEVDAAMNARPQKMDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 129

Query:   132 RELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCI 164
             R+ F  YG +   +I+        R + FV  D  D ++K +
Sbjct:   130 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 171


>TAIR|locus:2049721 [details] [associations]
            symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
            "response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
            "response to abscisic acid stimulus" evidence=IEP] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
            response to bacterium" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
            GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
            EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
            RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
            SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
            PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
            GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
            InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
            ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
            Uniprot:Q9ZUU4
        Length = 289

 Score = 93 (37.8 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
 Identities = 26/83 (31%), Positives = 43/83 (51%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKE 166
             +V+VGNLS       +  LF   G VVE  ++        + +GFV  DS  ++   IK 
Sbjct:   205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264

Query:   167 LNGMMVDGKPMKVQISTSRVRQR 189
             L+G  +DG+ ++V  + +R  +R
Sbjct:   265 LDGADLDGRQIRVSEAEARPPRR 287

 Score = 82 (33.9 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
 Identities = 21/75 (28%), Positives = 37/75 (49%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKE 88
             K+F+GN+        +  LFE  G V   +V+        + +GFV M +  E   A ++
Sbjct:    92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151

Query:    89 LNGQIVNEKPLKIEA 103
              NG  ++ +PL++ A
Sbjct:   152 FNGYELDGRPLRVNA 166


>UNIPROTKB|J3KTC1 [details] [associations]
            symbol:MSI2 "RNA-binding protein Musashi homolog 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
            EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
        Length = 141

 Score = 116 (45.9 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 34/116 (29%), Positives = 61/116 (52%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+FIG ++  TS + +R  F K+G++ EC V+++        +GFV   +       + +
Sbjct:    18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77

Query:    89 LNGQIVNEKPLKIEAATSRKG-PN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 141
              + ++ + K +  + A  R+  P   T T K+FVG LS NT   +V++ F  +G V
Sbjct:    78 PHHEL-DSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKV 132


>UNIPROTKB|Q28IQ9 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
            [GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
            development" evidence=ISS] [GO:0016477 "cell migration"
            evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
            regulation of translation" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0048793 "pronephros development"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
            GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
            GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
            RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
            SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
            Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
        Length = 166

 Score = 120 (47.3 bits), Expect = 5.6e-07, P = 5.6e-07
 Identities = 26/76 (34%), Positives = 46/76 (60%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+F+G +N  T+ E +  +F KYG+V E  VVK+        +GFV  EN E+ + A+  
Sbjct:     7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query:    89 LNGQIVNEKPLKIEAA 104
             +NG+ V+ + ++++ A
Sbjct:    67 MNGKSVDGRQIRVDQA 82


>UNIPROTKB|Q9DED4 [details] [associations]
            symbol:cirbp-b "Cold-inducible RNA-binding protein B"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
            "gastrulation" evidence=IMP] [GO:0009409 "response to cold"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
            binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
            "pronephros development" evidence=ISS] [GO:0060212 "negative
            regulation of nuclear-transcribed mRNA poly(A) tail shortening"
            evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
            EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
            HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
            PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
            Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
        Length = 166

 Score = 120 (47.3 bits), Expect = 5.6e-07, P = 5.6e-07
 Identities = 26/81 (32%), Positives = 47/81 (58%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+FIG +N  T+ E +  +F KYG++ E  VVK+        +GFV  EN ++ + A+  
Sbjct:     6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65

Query:    89 LNGQIVNEKPLKIEAATSRKG 109
             +NG+ V+ + ++++ A    G
Sbjct:    66 MNGKAVDGRQIRVDQAGKSSG 86


>TAIR|locus:2122368 [details] [associations]
            symbol:AT4G09040 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009570 EMBL:CP002687 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT010910 EMBL:AK175121
            EMBL:AK175672 EMBL:AK175723 EMBL:AK176316 EMBL:AK220985
            IPI:IPI00527701 RefSeq:NP_192643.2 UniGene:At.33716
            ProteinModelPortal:Q6NPL0 SMR:Q6NPL0 STRING:Q6NPL0 PRIDE:Q6NPL0
            EnsemblPlants:AT4G09040.1 GeneID:826483 KEGG:ath:AT4G09040
            TAIR:At4g09040 InParanoid:Q6NPL0 OMA:PTFNLFV PhylomeDB:Q6NPL0
            ProtClustDB:CLSN2716082 Genevestigator:Q6NPL0 Uniprot:Q6NPL0
        Length = 304

 Score = 133 (51.9 bits), Expect = 5.7e-07, P = 5.7e-07
 Identities = 43/129 (33%), Positives = 65/129 (50%)

Query:    37 KIFIGNVNPGTSV-ELIRPLFEKYGKVVECDVV-----KNYG--FVHMENDEEGRTAIKE 88
             ++   NV P TS  E IR LFEKYG V++ ++      +N G  F+ M + EE  TA+K 
Sbjct:    95 RLIAQNV-PWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKS 153

Query:    89 LNGQIVNEKPLKIEAATSRK----GPN-----TPTTKVFVGNLSDNTRAPEVRELF-VPY 138
             L       + LK++ A ++K     P       PT  +FV NL+   RA  ++E F    
Sbjct:   154 LESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADT 213

Query:   139 GTVVECDIV 147
             G VV  +++
Sbjct:   214 GNVVSTEVI 222


>RGD|1563142 [details] [associations]
            symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
            GeneTree:ENSGT00640000091232 IPI:IPI00778604
            ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
            UCSC:RGD:1563142 Uniprot:D3ZAS7
        Length = 607

 Score = 137 (53.3 bits), Expect = 5.9e-07, P = 5.9e-07
 Identities = 42/183 (22%), Positives = 80/183 (43%)

Query:    28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEE 81
             PG    G   IFI N+      + +   F  +G ++   VV N      +GFVH E  E 
Sbjct:    91 PGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEA 150

Query:    82 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVREL 134
              + AI  +NG ++N++ + +    SR+             T ++V NL  +     +++L
Sbjct:   151 AQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDL 210

Query:   135 FVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVQISTSRV 186
             F  +G      ++R+       +GF++ +   +  K +  +NG  V G+ + V  +  R 
Sbjct:   211 FSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRA 270

Query:   187 RQR 189
              ++
Sbjct:   271 ERQ 273

 Score = 127 (49.8 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 36/188 (19%), Positives = 91/188 (48%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVE---C-DVVKN----YGFVHMENDEEGRTAIKEL 89
             +++G+++P  +  ++  +F   G ++    C DV       Y +++ +   +   A+  +
Sbjct:    13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72

Query:    90 NGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECDI 146
             N +++  +P++I    S + P    +    +F+ NL ++     + + F  +G+++   +
Sbjct:    73 NFEMIKGQPIRI--MWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130

Query:   147 V------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQ 199
             V      R +GFVH ++ +   K I  +NGM+++ + + V    SR ++   +    +G 
Sbjct:   131 VYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGF 190

Query:   200 KSVPVQAL 207
              ++ V+ L
Sbjct:   191 TNIYVKNL 198


>UNIPROTKB|F8VZ49 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
            HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
            ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
            Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
            Uniprot:F8VZ49
        Length = 231

 Score = 130 (50.8 bits), Expect = 6.0e-07, P = 6.0e-07
 Identities = 39/149 (26%), Positives = 73/149 (48%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG ++  T+ E +R  FE++G + +C V+++        +GFV     EE   A+  
Sbjct:    34 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 93

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                +++G++V  K       + R G +    K+FVG + ++T    +R+ F  YG +   
Sbjct:    94 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 153

Query:   145 DIV--------RNYGFVHIDSPD-INKCI 164
             +I+        R + FV  D  D ++K +
Sbjct:   154 EIMTDRGSGKKRGFAFVTFDDHDSVDKIV 182


>ZFIN|ZDB-GENE-060224-1 [details] [associations]
            symbol:hnrnpa3 "heterogeneous nuclear
            ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
            GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
            UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
            Uniprot:B0V1I7
        Length = 312

 Score = 133 (51.9 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 39/151 (25%), Positives = 76/151 (50%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG ++  T+ + +R  FE++GK+ +C V+++        +GFV   +  E   A+  
Sbjct:    14 KLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMTA 73

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                +++G++V  K       +++ G +    K+FVG + ++T    +RE F  YG +   
Sbjct:    74 RPHKVDGRVVEPKRAVSREDSNKPGAHLTVKKIFVGGIKEDTEEYHIREYFECYGKIETI 133

Query:   145 DIV--------RNYGFVHIDSPD-INKCIKE 166
             DI+        R + FV  D  D ++K + +
Sbjct:   134 DIMEERSTGKKRGFCFVTFDDHDTVDKIVAQ 164


>ZFIN|ZDB-GENE-040718-300 [details] [associations]
            symbol:celf4 "CUGBP, Elav-like family member 4"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
            HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
            HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
            IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
            ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
            CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
            Bgee:Q6DGV1 Uniprot:Q6DGV1
        Length = 520

 Score = 136 (52.9 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 42/149 (28%), Positives = 74/149 (49%)

Query:    12 VSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN- 70
             V+  S+     SC  +P        K+FIG +      + +RPLFE++GK+ E  V+K+ 
Sbjct:    24 VNGISHTHSPASCATIP-MKDHDAIKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDR 82

Query:    71 YGFVHM----------ENDEEGRTAIKELNGQIVNEKPLKIEAATSR-KGPNTPTTKVFV 119
             +  +H           E+  + +TA+ E        +P++++ A S  +G +    K+FV
Sbjct:    83 FTGMHKGCAFLTYCARESALKAQTALHEQKTLPGMNRPIQVKPADSESRGEDR---KLFV 139

Query:   120 GNLSDNTRAPEVRELFVPYGTVVECDIVR 148
             G L+      +VR LF  +G++ EC I+R
Sbjct:   140 GMLNKQQCEDDVRRLFESFGSIEECTILR 168

 Score = 95 (38.5 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
 Identities = 31/111 (27%), Positives = 50/111 (45%)

Query:    91 GQIVNE--KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC---- 144
             GQI     +P  I     R+GP      +F+ +L       E+ ++F+P+G V+      
Sbjct:   411 GQISQAFPQPPPIIPQQQREGPEG--CNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFV 468

Query:   145 DIVRN----YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRP 190
             D   N    +GFV  D+P      I+ +NG  +  K +KVQ+   +   RP
Sbjct:   469 DRATNQSKCFGFVSFDNPGSAQAAIQSMNGFQIGMKRLKVQLKRPKDANRP 519

 Score = 78 (32.5 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKEL 89
             K+F+G +N     + +R LFE +G + EC ++       K   FV      E + AI  L
Sbjct:   136 KLFVGMLNKQQCEDDVRRLFESFGSIEECTILRGPDGNSKGCAFVKYSTHAEAQAAISAL 195

Query:    90 NG 91
             +G
Sbjct:   196 HG 197


>UNIPROTKB|Q5QPL9 [details] [associations]
            symbol:RALY "RNA-binding protein Raly" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000231958
            HOVERGEN:HBG002302 EMBL:AL031668 UniGene:Hs.136947 HGNC:HGNC:15921
            ChiTaRS:RALY EMBL:AL034549 IPI:IPI00642213 SMR:Q5QPL9 STRING:Q5QPL9
            Ensembl:ENST00000442805 Uniprot:Q5QPL9
        Length = 237

 Score = 130 (50.8 bits), Expect = 6.7e-07, P = 6.7e-07
 Identities = 31/94 (32%), Positives = 50/94 (53%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             N++ +N P   S+ + ++FIGN+N     +  +  +F KYG+V  C V K Y FV   N+
Sbjct:     9 NVTNKNDP--KSINS-RVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNE 65

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP 113
                R A+   NG+++  + L I  A   K P+ P
Sbjct:    66 RHARAAVLGENGRVLAGQTLDINMAGEPK-PDRP 98


>UNIPROTKB|A9UMT9 [details] [associations]
            symbol:LOC100135403 "LOC100135403 protein" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
            EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
            STRING:A9UMT9 Uniprot:A9UMT9
        Length = 375

 Score = 134 (52.2 bits), Expect = 6.7e-07, P = 6.7e-07
 Identities = 33/92 (35%), Positives = 54/92 (58%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+FIG +N  T+ + +  +F KYG+VVE  ++K+        + FV  E+  + + A +E
Sbjct:     9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68

Query:    89 LNGQIVNEKPLKIEAAT-------SRKGPNTP 113
             LNG+ ++ KP+K+E AT       SR+GP  P
Sbjct:    69 LNGKALDGKPIKVEQATKPSFSAPSRRGPPPP 100

 Score = 116 (45.9 bits), Expect = 0.00012, P = 0.00012
 Identities = 28/77 (36%), Positives = 42/77 (54%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKE 166
             K+F+G L+  T    +  +F  YG VVE  ++        R + FV  +SP D     +E
Sbjct:     9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68

Query:   167 LNGMMVDGKPMKVQIST 183
             LNG  +DGKP+KV+ +T
Sbjct:    69 LNGKALDGKPIKVEQAT 85


>MGI|MGI:1891706 [details] [associations]
            symbol:Spen "SPEN homolog, transcriptional regulator
            (Drosophila)" species:10090 "Mus musculus" [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0001085 "RNA polymerase II transcription factor binding"
            evidence=ISO] [GO:0001191 "RNA polymerase II transcription factor
            binding transcription factor activity involved in negative
            regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0003714 "transcription corepressor activity"
            evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0007219 "Notch signaling pathway" evidence=IEA]
            [GO:0017053 "transcriptional repressor complex" evidence=ISO]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=ISO;IDA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0050769 "positive
            regulation of neurogenesis" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:1891706 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
            GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007219
            GO:GO:0003700 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
            eggNOG:NOG12793 InterPro:IPR012921 Pfam:PF07744 PROSITE:PS50917
            Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939 CTD:23013
            HOGENOM:HOG000231295 HOVERGEN:HBG045583 OrthoDB:EOG4JM7NS
            ChiTaRS:SPEN InterPro:IPR010912 EMBL:BY726481 EMBL:AF156529
            EMBL:AB055980 EMBL:Z78160 EMBL:AK122402 IPI:IPI00378158
            IPI:IPI00378159 IPI:IPI00605780 RefSeq:NP_062737.2
            UniGene:Mm.299906 ProteinModelPortal:Q62504 SMR:Q62504
            STRING:Q62504 PhosphoSite:Q62504 PaxDb:Q62504 PRIDE:Q62504
            GeneID:56381 KEGG:mmu:56381 NextBio:312464 Genevestigator:Q62504
            GermOnline:ENSMUSG00000040761 Uniprot:Q62504
        Length = 3644

 Score = 143 (55.4 bits), Expect = 7.0e-07, P = 7.0e-07
 Identities = 44/175 (25%), Positives = 79/175 (45%)

Query:    16 SNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK-----N 70
             S N+       +  F    T  +FIGN+   T+   +R +F+++G++V+ D+ K      
Sbjct:   419 SENEFRPLDERIDEFHPKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQ 478

Query:    71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPE 130
             Y F+   +      AIK+++G+ +    LK+       G + PT  V++  LS N     
Sbjct:   479 YAFLQYCDIASVCKAIKKMDGEYLGNNRLKLGF-----GKSMPTNCVWLDGLSSNVSDQY 533

Query:   131 VRELFVPYGTVVEC--DIVRNYGFV-HIDSPDINKCIKELNGMMVDGKPMKVQIS 182
             +   F  YG VV+   D ++    V + +  D    +KE  G  + G  +KV  +
Sbjct:   534 LTRHFCRYGPVVKVVFDRLKGMALVLYSEIEDAQAAVKETKGRKIGGNKIKVDFA 588


>POMBASE|SPBC660.15 [details] [associations]
            symbol:SPBC660.15 "mRNA cleavage factor complex subunit
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
            complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
            evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
            EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
            eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
            OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
            ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
            EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
            OMA:CHKANDG NextBio:20802263 Uniprot:O94432
        Length = 474

 Score = 135 (52.6 bits), Expect = 7.6e-07, P = 7.6e-07
 Identities = 45/176 (25%), Positives = 86/176 (48%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDE-EGRTAIK 87
             K+FIG +N  T+ + +R  FE++G+V++C V+++        +GF+  +N +       K
Sbjct:   164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223

Query:    88 E--LNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
             E  L+G+I++ K      A  R+     T K+FVG +  +    E R  F  +G V++  
Sbjct:   224 EHHLDGKIIDPK-----RAIPRE-EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDAT 277

Query:   146 IV--------RNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVD 193
             ++        R +GFV  ++    +       + + GKP++V+ +T +   R   D
Sbjct:   278 LMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHD 333


>UNIPROTKB|Q7ZWM3 [details] [associations]
            symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
            species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
            KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
            UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
            KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
        Length = 462

 Score = 115 (45.5 bits), Expect = 0.00022, P = 0.00022
 Identities = 32/124 (25%), Positives = 64/124 (51%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-YGFVHM----------ENDEEGRTA 85
             K+FIG +      + ++P+FE++GK+ E  V+K+ +  +H           E+  + ++A
Sbjct:     8 KLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSA 67

Query:    86 IKELNGQIVNEKPLKIEAATSR-KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
             + E        +P++++ A S  +G +    K+FVG L       +VR +F  +G + EC
Sbjct:    68 LHEQKTLPGMNRPIQVKPADSESRGEDR---KLFVGMLGKQQTDEDVRRMFETFGNIDEC 124

Query:   145 DIVR 148
              ++R
Sbjct:   125 TVLR 128

 Score = 98 (39.6 bits), Expect = 7.8e-07, Sum P(3) = 7.8e-07
 Identities = 26/93 (27%), Positives = 44/93 (47%)

Query:   107 RKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC----DIVRN----YGFVHIDSP 158
             R+GP      +F+ +L       E+ ++F+P+G V+      D   N    +GFV  D+P
Sbjct:   371 REGPEG--CNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNP 428

Query:   159 -DINKCIKELNGMMVDGKPMKVQISTSRVRQRP 190
                   I+ +NG  +  K +KVQ+   +   RP
Sbjct:   429 GSAQAAIQSMNGFQIGMKRLKVQLKRPKDANRP 461

 Score = 76 (31.8 bits), Expect = 7.8e-07, Sum P(3) = 7.8e-07
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKEL 89
             K+F+G +    + E +R +FE +G + EC V+       K   FV  +   E + AI  L
Sbjct:    96 KLFVGMLGKQQTDEDVRRMFETFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINAL 155

Query:    90 NG 91
             +G
Sbjct:   156 HG 157

 Score = 37 (18.1 bits), Expect = 7.8e-07, Sum P(3) = 7.8e-07
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query:    90 NGQIVNEKPL-KIEAATSRKGPNTPTT 115
             NG I    P+ +I + TS  G +TP T
Sbjct:   250 NGIIAT--PITQINSITSSSGTSTPPT 274


>UNIPROTKB|Q9Y4C8 [details] [associations]
            symbol:RBM19 "Probable RNA-binding protein 19" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
            organismal development" evidence=IEA] [GO:0005694 "chromosome"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
            "nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
            evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
            development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
            GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
            HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
            EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
            EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
            RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
            PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
            STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
            PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
            Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
            KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
            HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
            PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
            OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
            EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
            CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
            Uniprot:Q9Y4C8
        Length = 960

 Score = 102 (41.0 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
 Identities = 31/103 (30%), Positives = 51/103 (49%)

Query:   113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-----------YGFVHIDSPD-I 160
             P   +F+ NL+ +T   +++E+F   GTV  C I +            +GFV    P+  
Sbjct:   728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787

Query:   161 NKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKSVP 203
              K +K+L G +VDG  ++V+IS    +  P V   +  +K VP
Sbjct:   788 QKALKQLQGHVVDGHKLEVRISERATK--PAV--TLARKKQVP 826

 Score = 83 (34.3 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
 Identities = 19/84 (22%), Positives = 38/84 (45%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFVHMENDEEGRTAIKEL 89
             ++ + N+  G   E  R LF  +G + +C +        + +GF+  +++EE + A K  
Sbjct:     3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHF 62

Query:    90 NGQIVNEKPLKIEAATSRKGPNTP 113
             N   ++   + +E   S   P  P
Sbjct:    63 NKSFIDTSRITVEFCKSFGDPAKP 86

 Score = 65 (27.9 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
 Identities = 23/81 (28%), Positives = 39/81 (48%)

Query:    37 KIFIGNVNPGTSVEL-IRPLFEKYGKVVEC----DVV----KNYGFVHMENDEEGRTAIK 87
             ++F+ N+ P TS E  +  LF KYG + E     D +    K + F+     E    A  
Sbjct:   403 RLFVRNL-PYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYS 461

Query:    88 ELNGQIVNEKPLKIEAATSRK 108
             E++GQ+   + L +  +T +K
Sbjct:   462 EVDGQVFQGRMLHVLPSTIKK 482


>UNIPROTKB|Q6IRQ4 [details] [associations]
            symbol:rbmx "RNA-binding motif protein, X chromosome"
            species:8355 "Xenopus laevis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
            InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
            RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
            ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
            Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
        Length = 370

 Score = 133 (51.9 bits), Expect = 8.8e-07, P = 8.8e-07
 Identities = 33/91 (36%), Positives = 54/91 (59%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+FIG +N  T+ + +  +F KYG+VVE  ++K+        + FV  E+  + + A +E
Sbjct:     9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68

Query:    89 LNGQIVNEKPLKIEAAT-------SRKGPNT 112
             LNG+ ++ KP+K+E AT       SR+GP T
Sbjct:    69 LNGKALDGKPIKVEQATKPSFSTPSRRGPPT 99

 Score = 116 (45.9 bits), Expect = 0.00012, P = 0.00012
 Identities = 28/77 (36%), Positives = 42/77 (54%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKE 166
             K+F+G L+  T    +  +F  YG VVE  ++        R + FV  +SP D     +E
Sbjct:     9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68

Query:   167 LNGMMVDGKPMKVQIST 183
             LNG  +DGKP+KV+ +T
Sbjct:    69 LNGKALDGKPIKVEQAT 85


>ZFIN|ZDB-GENE-110408-50 [details] [associations]
            symbol:celf3b "cugbp, Elav-like family member 3b"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
            EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
            EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
            Ensembl:ENSDART00000024206 Uniprot:E7F293
        Length = 442

 Score = 134 (52.2 bits), Expect = 9.1e-07, P = 9.1e-07
 Identities = 35/124 (28%), Positives = 67/124 (54%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-YGFVHM----------ENDEEGRTA 85
             K+FIG +      + ++P+FE+YGK+ E  V+K+ Y  +H           E+  + ++A
Sbjct:     8 KLFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQSA 67

Query:    86 IKELNGQIVNEKPLKIEAATSR-KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
             +   +G     +P++++ A S  +G +    K+FVG L       +VR++F P+G + EC
Sbjct:    68 LHYSSGYSGMNRPIQVKPADSEGRGEDR---KLFVGMLGKQQSDEDVRKIFEPFGGIDEC 124

Query:   145 DIVR 148
              ++R
Sbjct:   125 TVLR 128

 Score = 94 (38.1 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
 Identities = 29/98 (29%), Positives = 46/98 (46%)

Query:   102 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC----DIVRN----YGFV 153
             EA T  +G N     VF+ +L       E+ ++F+P+G V+      D   N    +GFV
Sbjct:   349 EANTGPEGCN-----VFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFV 403

Query:   154 HIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRP 190
               D+P      I+ +NG  +  K +KVQ+   +   RP
Sbjct:   404 SFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRP 441

 Score = 77 (32.2 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+F+G +    S E +R +FE +G + EC V++           FV  ++  E ++AI  
Sbjct:    96 KLFVGMLGKQQSDEDVRKIFEPFGGIDECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINS 155

Query:    89 LNG 91
             L+G
Sbjct:   156 LHG 158


>UNIPROTKB|K7GNR2 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
        Length = 129

 Score = 114 (45.2 bits), Expect = 9.6e-07, P = 9.6e-07
 Identities = 24/77 (31%), Positives = 47/77 (61%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+FIG +N  T+ + +  +F KYG++VE  ++K+        + FV  E+  + + A ++
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:    89 LNGQIVNEKPLKIEAAT 105
             +NG+ ++ K +K+E AT
Sbjct:    69 MNGKSLDGKAIKVEQAT 85

 Score = 100 (40.3 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 24/77 (31%), Positives = 41/77 (53%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKE 166
             K+F+G L+  T    +  +F  YG +VE  ++        R + FV  +SP D     ++
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   167 LNGMMVDGKPMKVQIST 183
             +NG  +DGK +KV+ +T
Sbjct:    69 MNGKSLDGKAIKVEQAT 85


>UNIPROTKB|E7ETC0 [details] [associations]
            symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
            ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
            Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
            Uniprot:E7ETC0
        Length = 135

 Score = 114 (45.2 bits), Expect = 9.6e-07, P = 9.6e-07
 Identities = 28/113 (24%), Positives = 52/113 (46%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEEGRTAIKELNG 91
             +++GN++   +  LI  LF + G    C ++        Y FV      +   A+  +NG
Sbjct:    11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG 70

Query:    92 QIVNEKPLKIEAATSRKGPNTPTTK---VFVGNLSDNTRAPEVRELFVPYGTV 141
             + +  K +K+  AT+       T+    VFVG+LS      +++  F P+G +
Sbjct:    71 RKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 123


>MGI|MGI:1932407 [details] [associations]
            symbol:Celf4 "CUGBP, Elav-like family member 4"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
            "mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
            selection" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
            "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISO] [GO:0090394 "negative regulation of excitatory
            postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
            HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
            GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
            GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
            EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
            EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
            EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
            IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
            IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
            RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
            RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
            SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
            PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
            GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
            UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
            OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
            Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
        Length = 486

 Score = 76 (31.8 bits), Expect = 9.6e-07, Sum P(3) = 9.6e-07
 Identities = 23/84 (27%), Positives = 41/84 (48%)

Query:    73 FVHMENDEEGRTAIKELNGQIVNEKPLKIEAATS--RKG------PNTPTTKVFVGNLSD 124
             +   E+  + ++A+ E        +P++++ A S  R G      P +   K+FVG L+ 
Sbjct:   102 YCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNK 161

Query:   125 NTRAPEVRELFVPYGTVVECDIVR 148
                  +VR LF  +G + EC I+R
Sbjct:   162 QQSEDDVRRLFEAFGNIEECTILR 185

 Score = 73 (30.8 bits), Expect = 9.6e-07, Sum P(3) = 9.6e-07
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 70
             K+FIG +      + ++PLFE++GK+ E  V+K+
Sbjct:    55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKD 88

 Score = 67 (28.6 bits), Expect = 9.6e-07, Sum P(3) = 9.6e-07
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query:   150 YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQRP 190
             +GFV  D+P      I+ +NG  +  K +KVQ+   +   RP
Sbjct:   444 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRP 485


>UNIPROTKB|D4ACJ8 [details] [associations]
            symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
            ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
        Length = 268

 Score = 130 (50.8 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 39/149 (26%), Positives = 73/149 (48%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG ++  T+ E +R  FE++G + +C V+++        +GFV     EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                +++G++V  K       + R G +    K+FVG + ++T    +R+ F  YG +   
Sbjct:    75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134

Query:   145 DIV--------RNYGFVHIDSPD-INKCI 164
             +I+        R + FV  D  D ++K +
Sbjct:   135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163


>ASPGD|ASPL0000061196 [details] [associations]
            symbol:AN10164 species:162425 "Emericella nidulans"
            [GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
            ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
            Uniprot:C8VTL0
        Length = 477

 Score = 134 (52.2 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 35/163 (21%), Positives = 77/163 (47%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVK---------NYGFVHMENDEEGRTAIKE 88
             +++G ++P  + ++++ +FE  G V+   ++          NYGFV  ++      A++ 
Sbjct:    92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151

Query:    89 LNGQIVNEKPLKIEAATSRKGPNTPTTK----VFVGNLSDNTRAPEVRELFVPYGTVVEC 144
             LNG+ +++  +++  A      N   T     +FVG+LS+      + + F  +G+V E 
Sbjct:   152 LNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEA 211

Query:   145 DIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMK 178
              ++        R YGFV   +  D  K +  ++G  +  + ++
Sbjct:   212 RVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIR 254

 Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 33/103 (32%), Positives = 51/103 (49%)

Query:    39 FIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIVNE 96
             ++GN+ P T+   I PLF+ +G V+E  +   + + F+ M+  E   +AI +LNG  VN 
Sbjct:   311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQADRGFAFIKMDTHENAASAICQLNGYNVNG 370

Query:    97 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
             +PLK      R  P T     F G  +++  A      F  YG
Sbjct:   371 RPLKCSWGKDR--PPTGQFDNFPGQQANSPFASSPGPYFPQYG 411

 Score = 92 (37.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
 Identities = 24/72 (33%), Positives = 40/72 (55%)

Query:   112 TPT--TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDSPD-INKCIKE 166
             TP   T  +VGNL+  T   ++  LF  +G V+E  +   R + F+ +D+ +     I +
Sbjct:   303 TPAWQTTCYVGNLTPYTTQNDIVPLFQNFGYVIETRMQADRGFAFIKMDTHENAASAICQ 362

Query:   167 LNGMMVDGKPMK 178
             LNG  V+G+P+K
Sbjct:   363 LNGYNVNGRPLK 374

 Score = 72 (30.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
 Identities = 18/84 (21%), Positives = 39/84 (46%)

Query:    36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
             F IF+G+++   + E++   F  +G V E  V+        + YGFV      +   A+ 
Sbjct:   182 FHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALT 241

Query:    88 ELNGQIVNEKPLKIEAATSRKGPN 111
              ++G+ +  + ++   A  +  P+
Sbjct:   242 SMDGEWLGSRAIRCNWANQKGQPS 265


>UNIPROTKB|G4N7J4 [details] [associations]
            symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
            RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
            KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
            EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
            Uniprot:G4N7J4
        Length = 479

 Score = 134 (52.2 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 39/162 (24%), Positives = 79/162 (48%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVK-------NYGFVHMENDEEGRTAIKELN 90
             +++G ++   + +++R +FE  G V    ++        NYGFV  ++      A++ LN
Sbjct:    87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLN 146

Query:    91 GQIVNEKPLKI----EAATSRKGPNTPTT-KVFVGNLSDNTRAPEVRELFVPYGTVVECD 145
             G+ V++  +++    +AATS    +T     +FVG+LS+      + + F  +G+V E  
Sbjct:   147 GRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEAR 206

Query:   146 IV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMK 178
             ++        R YGFV   D  D  K +  ++G  +  + ++
Sbjct:   207 VMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIR 248

 Score = 115 (45.5 bits), Expect = 0.00024, P = 0.00024
 Identities = 25/75 (33%), Positives = 39/75 (52%)

Query:    39 FIGNVNPGTSVELIRPLFEKYGKVVEC--DVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             ++GN+ P T+   + PLF+ +G VVE      + + F+ M++ E    AI  LNG  VN 
Sbjct:   305 YVGNLTPYTTANDVVPLFQNFGYVVESRFQADRGFAFIKMDSHENAAQAICGLNGYNVNG 364

Query:    97 KPLKIEAATSRKGPN 111
             +PLK      +   N
Sbjct:   365 RPLKCSWGKDKNSTN 379

 Score = 98 (39.6 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
 Identities = 28/72 (38%), Positives = 40/72 (55%)

Query:   112 TPT--TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDSPD-INKCIKE 166
             TP   T  +VGNL+  T A +V  LF  +G VVE      R + F+ +DS +   + I  
Sbjct:   297 TPAYQTTCYVGNLTPYTTANDVVPLFQNFGYVVESRFQADRGFAFIKMDSHENAAQAICG 356

Query:   167 LNGMMVDGKPMK 178
             LNG  V+G+P+K
Sbjct:   357 LNGYNVNGRPLK 368

 Score = 75 (31.5 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
 Identities = 18/84 (21%), Positives = 40/84 (47%)

Query:    36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
             F IF+G+++   + E++   F  +G V E  V+        + YGFV   +  +   A+ 
Sbjct:   176 FHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALS 235

Query:    88 ELNGQIVNEKPLKIEAATSRKGPN 111
              ++G+ +  + ++   A  +  P+
Sbjct:   236 SMDGEWLGSRAIRCNWANQKGQPS 259


>ZFIN|ZDB-GENE-030131-618 [details] [associations]
            symbol:hnrnpa0l "heterogeneous nuclear
            ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
            GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
            EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
            SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
            InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
        Length = 302

 Score = 131 (51.2 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 34/124 (27%), Positives = 62/124 (50%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
             K+F+G +N  T+ E +R  FE+YG++ +C VV N        +GFV   + EE   A+  
Sbjct:     7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66

Query:    89 LNGQIVNEKPLKIEAATSRKGPNTP-----TTKVFVGNLSDNTRAPEVRELFVPYGTVVE 143
                 IV+   + ++ A +R+    P       K+FVG L D+     +++ F  +G + +
Sbjct:    67 -RPHIVDGNNVDLKRAVAREDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEK 125

Query:   144 CDIV 147
               ++
Sbjct:   126 AQVI 129


>DICTYBASE|DDB_G0292472 [details] [associations]
            symbol:DDB_G0292472 species:44689 "Dictyostelium
            discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
            ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
            KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
        Length = 550

 Score = 120 (47.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 31/108 (28%), Positives = 52/108 (48%)

Query:    71 YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPE 130
             YGFV     +E   AI++LNG  V+ KPLK+  A +    +T    +++  L  +     
Sbjct:   154 YGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSSQSTHAN-LYINRLEPHVTNAN 212

Query:   131 VRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNG 169
             ++E+F  +G V++  I+        R  GFVH     +  K +  +NG
Sbjct:   213 LKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMNG 260

 Score = 54 (24.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 8/33 (24%), Positives = 18/33 (54%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 70
             + + N+        ++ LF+K+G++  C +V N
Sbjct:    84 LIVNNIPKSMDSNELKSLFDKFGEIESCKIVFN 116


>UNIPROTKB|F1NYP4 [details] [associations]
            symbol:CELF4 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 OMA:EDSEKNG EMBL:AADN02067588
            EMBL:AADN02067589 EMBL:AADN02067590 EMBL:AADN02067591
            EMBL:AADN02067592 EMBL:AADN02067593 EMBL:AADN02067594
            EMBL:AADN02067595 EMBL:AADN02067596 IPI:IPI00590965
            Ensembl:ENSGALT00000003800 Uniprot:F1NYP4
        Length = 361

 Score = 92 (37.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 26/93 (27%), Positives = 44/93 (47%)

Query:   107 RKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC----DIVRN----YGFVHIDSP 158
             R+GP      +F+ +L       E+ ++F+P+G V+      D   N    +GFV  D+P
Sbjct:   270 REGPEG--CNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNP 327

Query:   159 -DINKCIKELNGMMVDGKPMKVQISTSRVRQRP 190
                   I+ +NG  +  K +KVQ+   +   RP
Sbjct:   328 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRP 360

 Score = 83 (34.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKEL 89
             K+F+G +N   S + +R LFE +G + EC ++       K   FV   +  E + AI  L
Sbjct:    10 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 69

Query:    90 NG 91
             +G
Sbjct:    70 HG 71


>ZFIN|ZDB-GENE-081104-82 [details] [associations]
            symbol:si:ch1073-335m2.2 "si:ch1073-335m2.2"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-081104-82 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921 Pfam:PF07744
            PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
            SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
            EMBL:CU652212 EMBL:CU693473 IPI:IPI00932066
            Ensembl:ENSDART00000110807 ArrayExpress:F1Q618 Bgee:F1Q618
            Uniprot:F1Q618
        Length = 3103

 Score = 141 (54.7 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 39/162 (24%), Positives = 77/162 (47%)

Query:    30 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDV-----VKNYGFVHMENDEEGRT 84
             F    T  +FIGN+   T+ + +  +F+++G++V+ D+     V  Y FV   +      
Sbjct:   430 FHPKATRTLFIGNLEKTTNYQQLLDVFQRFGEIVDIDIKRVNGVPQYAFVQYSDIASVCK 489

Query:    85 AIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
             AIK+++G+ +    L ++      G + PT  V++  L+ N     +   F  YG VV+ 
Sbjct:   490 AIKKMDGEYLGTNRLNVQLGF---GKSMPTACVWLDGLTSNITEQYLTRHFCRYGPVVKV 546

Query:   145 --DIVRNYGFVHIDSPDINKC-IKELNGMMVDGKPMKVQIST 183
               D ++    V  ++ D  +  ++E  G  + G  +KV  ++
Sbjct:   547 VFDRLKGMALVLYNNTDFAQAAVRETKGWKIGGNKIKVDFAS 588


>TAIR|locus:2039975 [details] [associations]
            symbol:RS31a "arginine/serine-rich splicing factor 31a"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AC006418 UniGene:At.13832 UniGene:At.28553
            HSSP:P52298 HOGENOM:HOG000276234 KO:K12893 EMBL:AY065237
            EMBL:BT000995 EMBL:AK317202 IPI:IPI00520334 PIR:A84905
            RefSeq:NP_182184.1 ProteinModelPortal:Q9ZPX8 SMR:Q9ZPX8
            IntAct:Q9ZPX8 PaxDb:Q9ZPX8 PRIDE:Q9ZPX8 EnsemblPlants:AT2G46610.1
            GeneID:819273 KEGG:ath:AT2G46610 TAIR:At2g46610 eggNOG:NOG254972
            InParanoid:Q9ZPX8 OMA:TRERDME PhylomeDB:Q9ZPX8
            ProtClustDB:CLSN2683469 ArrayExpress:Q9ZPX8 Genevestigator:Q9ZPX8
            Uniprot:Q9ZPX8
        Length = 250

 Score = 129 (50.5 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 41/168 (24%), Positives = 72/168 (42%)

Query:    38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN-- 95
             +++GN +  T    +  LF K+G+V   D+   Y FV+ E++ +   AI+  +       
Sbjct:     4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTFGYG 63

Query:    96 EKPLKIEAATSRKG----PNT--------PTTKVFVGNLSD-NTRAPEVRELFVPYGTVV 142
              + L +E A   +G    P          PT  +FV N     TR  ++   F PYG V+
Sbjct:    64 RRKLSVEWAKDFQGERGKPRDGKAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYGKVL 123

Query:   143 ECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
                + RN+ FV   +  D  K +   +   +  K + V+ +     +R
Sbjct:   124 NVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGER 171


>CGD|CAL0004726 [details] [associations]
            symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
            "poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
            stability" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
            RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
            GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
        Length = 510

 Score = 134 (52.2 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 49/208 (23%), Positives = 92/208 (44%)

Query:     6 QQQLVKVSRYSNNQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVEC 65
             QQ     S+    Q+N +     G   V    +++GN+    S E I+ LF   G  V+ 
Sbjct:    50 QQAQQPSSQDDEKQVNAASAKEGG-REVSNKILYVGNLPKSASEETIQELFSVGGNPVKT 108

Query:    66 -----DVVK---NYGFVHMENDEEGRTAIKELNGQIVNEKPLKI----EAATSRKGPNT- 112
                  D  K   NY F+  + +E    A+  LNG++V++  +K+    ++A     PN  
Sbjct:   109 IKILNDKNKAGFNYAFIEYDTNEVADMALNTLNGRLVDDVEIKVNWAFQSAAIAGNPNNT 168

Query:   113 --PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDIN 161
               P   +FVG+LS       +R  F  + ++ +  ++        R YGFV   +  D  
Sbjct:   169 EEPLFNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAE 228

Query:   162 KCIKELNGMMVDGKPMKVQISTSRVRQR 189
               ++ +NG  + G+ ++   ++ + +Q+
Sbjct:   229 LALQTMNGEWLCGRAIRCNWASHKQQQQ 256


>UNIPROTKB|P0CB38 [details] [associations]
            symbol:PABPC4L "Polyadenylate-binding protein 4-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
            EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
            ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
            DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
            UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
            neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
            Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
        Length = 370

 Score = 132 (51.5 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 39/177 (22%), Positives = 81/177 (45%)

Query:    34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIK 87
             G   +FI N++     + +   F  +GK++   V+      K Y FVH +N      AI+
Sbjct:    96 GIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIE 155

Query:    88 ELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTRAPEVRELFVPYGT 140
             E+NG+++    + +    +RK             T V++ N   +     ++++F  YG 
Sbjct:   156 EMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGK 215

Query:   141 VVECDIV-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVQISTSRVRQR 189
              +   ++       + +GFV  DS +   K ++E+NG  ++G+ + V  +  +V ++
Sbjct:   216 TLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ 272


>UNIPROTKB|B4DJK0 [details] [associations]
            symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AL157789
            UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5 EMBL:AL355837
            EMBL:AK296113 IPI:IPI01025047 ProteinModelPortal:B4DJK0 SMR:B4DJK0
            STRING:B4DJK0 Ensembl:ENST00000555349 ArrayExpress:B4DJK0
            Bgee:B4DJK0 Uniprot:B4DJK0
        Length = 124

 Score = 113 (44.8 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 21/71 (29%), Positives = 42/71 (59%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             ++FIG +NP    + +   F+ YG++ + D+ + +GFV  E+  +   A+ EL+G+ +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:    97 KPLKIEAATSR 107
             + + IE A +R
Sbjct:    65 ERVTIEHARAR 75

 Score = 111 (44.1 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 25/77 (32%), Positives = 41/77 (53%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 174
             +VF+G L+   R  +V   F  YG + + D+ R +GFV  + P D +  + EL+G  +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:   175 KPMKVQISTSRVRQRPG 191
             +  +V I  +R R R G
Sbjct:    65 E--RVTIEHARARSRGG 79


>UNIPROTKB|B4DUA4 [details] [associations]
            symbol:SRSF5 "cDNA FLJ57437, highly similar to Splicing
            factor, arginine/serine-rich 5" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
            EMBL:AL157789 UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5
            EMBL:AL355837 EMBL:AK300560 IPI:IPI01009006
            ProteinModelPortal:B4DUA4 SMR:B4DUA4 STRING:B4DUA4
            Ensembl:ENST00000451983 Ensembl:ENST00000553369
            Ensembl:ENST00000554021 UCSC:uc021rvj.1 ArrayExpress:B4DUA4
            Bgee:B4DUA4 Uniprot:B4DUA4
        Length = 138

 Score = 113 (44.8 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 21/71 (29%), Positives = 42/71 (59%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             ++FIG +NP    + +   F+ YG++ + D+ + +GFV  E+  +   A+ EL+G+ +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:    97 KPLKIEAATSR 107
             + + IE A +R
Sbjct:    65 ERVTIEHARAR 75

 Score = 111 (44.1 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 25/77 (32%), Positives = 41/77 (53%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 174
             +VF+G L+   R  +V   F  YG + + D+ R +GFV  + P D +  + EL+G  +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:   175 KPMKVQISTSRVRQRPG 191
             +  +V I  +R R R G
Sbjct:    65 E--RVTIEHARARSRGG 79


>UNIPROTKB|G3V5K8 [details] [associations]
            symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] [GO:0051726 "regulation
            of cell cycle" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0009611
            GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0051726 EMBL:AL157789 HGNC:HGNC:10787 ChiTaRS:SRSF5
            EMBL:AL355837 ProteinModelPortal:G3V5K8 SMR:G3V5K8
            Ensembl:ENST00000553548 ArrayExpress:G3V5K8 Bgee:G3V5K8
            Uniprot:G3V5K8
        Length = 99

 Score = 113 (44.8 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 21/71 (29%), Positives = 42/71 (59%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             ++FIG +NP    + +   F+ YG++ + D+ + +GFV  E+  +   A+ EL+G+ +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:    97 KPLKIEAATSR 107
             + + IE A +R
Sbjct:    65 ERVTIEHARAR 75

 Score = 111 (44.1 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 25/77 (32%), Positives = 41/77 (53%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 174
             +VF+G L+   R  +V   F  YG + + D+ R +GFV  + P D +  + EL+G  +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:   175 KPMKVQISTSRVRQRPG 191
             +  +V I  +R R R G
Sbjct:    65 E--RVTIEHARARSRGG 79


>UNIPROTKB|Q5ZLF9 [details] [associations]
            symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
            HOGENOM:HOG000276234 OrthoDB:EOG4RJG2V EMBL:AADN02003156
            EMBL:AJ719775 IPI:IPI00651527 UniGene:Gga.4502 STRING:Q5ZLF9
            Ensembl:ENSGALT00000032618 Uniprot:Q5ZLF9
        Length = 123

 Score = 113 (44.8 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 21/71 (29%), Positives = 42/71 (59%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
             ++FIG +NP    + +   F+ YG++ + D+ + +GFV  E+  +   A+ EL+G+ +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:    97 KPLKIEAATSR 107
             + + IE A +R
Sbjct:    65 ERVTIEHARAR 75

 Score = 107 (42.7 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 24/75 (32%), Positives = 40/75 (53%)

Query:   116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 174
             +VF+G L+   R  +V   F  YG + + D+ R +GFV  + P D +  + EL+G  +  
Sbjct:     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query:   175 KPMKVQISTSRVRQR 189
             +  +V I  +R R R
Sbjct:    65 E--RVTIEHARARSR 77


>UNIPROTKB|E1BUB9 [details] [associations]
            symbol:E1BUB9 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR017347
            PIRSF:PIRSF037992 GeneTree:ENSGT00390000006718 OMA:CISENAD
            EMBL:AADN02024786 EMBL:AADN02024787 EMBL:AADN02024788
            EMBL:AADN02024789 EMBL:AADN02024790 IPI:IPI00680968
            ProteinModelPortal:E1BUB9 Ensembl:ENSGALT00000030856 Uniprot:E1BUB9
        Length = 290

 Score = 130 (50.8 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 33/94 (35%), Positives = 50/94 (53%)

Query:    21 NISCRNMPGFSSVGTFKIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFVHMEND 79
             N++ +N P   S+ + ++FIGN+N     +  I  +F KYGK+V C V K Y FV   ++
Sbjct:     9 NVTNKNDP--KSINS-RVFIGNLNTAIVKKGDIEAIFAKYGKIVGCSVHKGYAFVQYMSE 65

Query:    80 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP 113
                R A+   N +I+  +PL I  A   K P  P
Sbjct:    66 RHARAAVAGENARIIAGQPLDINMAGEPK-PYRP 98


>UNIPROTKB|F8VXY0 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
            Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
            Uniprot:F8VXY0
        Length = 304

 Score = 130 (50.8 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 39/149 (26%), Positives = 73/149 (48%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG ++  T+ E +R  FE++G + +C V+++        +GFV     EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                +++G++V  K       + R G +    K+FVG + ++T    +R+ F  YG +   
Sbjct:    75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134

Query:   145 DIV--------RNYGFVHIDSPD-INKCI 164
             +I+        R + FV  D  D ++K +
Sbjct:   135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163


>UNIPROTKB|F8VSB5 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
            Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
            Uniprot:F8VSB5
        Length = 306

 Score = 130 (50.8 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 39/149 (26%), Positives = 73/149 (48%)

Query:    37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIK- 87
             K+FIG ++  T+ E +R  FE++G + +C V+++        +GFV     EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:    88 ---ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
                +++G++V  K       + R G +    K+FVG + ++T    +R+ F  YG +   
Sbjct:    75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134

Query:   145 DIV--------RNYGFVHIDSPD-INKCI 164
             +I+        R + FV  D  D ++K +
Sbjct:   135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163

WARNING:  HSPs involving 484 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.136   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      207       207   0.00099  111 3  11 22  0.38    33
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  734
  No. of states in DFA:  551 (59 KB)
  Total size of DFA:  151 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.94u 0.09s 20.03t   Elapsed:  00:00:02
  Total cpu time:  19.99u 0.09s 20.08t   Elapsed:  00:00:03
  Start:  Thu Aug 15 14:56:32 2013   End:  Thu Aug 15 14:56:35 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with lark lark lark	protein from Drosophila melanogaster	5.1e-58
BLAST match view associations BLAST with rbm4.1 rbm4.1 rbm4.1 RNA binding motif protein 4.1	gene_product from Danio rerio	2.9e-32
BLAST match view associations BLAST with zgc:77262 zgc:77262 zgc:77262	gene_product from Danio rerio	1.3e-29
BLAST match view associations BLAST with LOC100859076 LOC100859076 LOC100859076 Uncharacterized protein	protein from Gallus gallus	1.6e-29
BLAST match view associations BLAST with RBM4B RBM4B RBM4B Uncharacterized protein	protein from Bos taurus	2.1e-29
BLAST match view associations BLAST with RBM4B RBM4B RBM4B Uncharacterized protein	protein from Canis lupus familiaris	2.1e-29
BLAST match view associations BLAST with RBM4B RBM4B RBM4B RNA-binding protein 4B	protein from Homo sapiens	2.1e-29
BLAST match view associations BLAST with RBM4B RBM4B RBM4B RNA-binding protein 4B	protein from Sus scrofa	2.1e-29
BLAST match view associations BLAST with RBM4 RBM4 RBM4 RNA-binding protein 4	protein from Oryctolagus cuniculus	2.1e-29
BLAST match view associations BLAST with Rbm4b Rbm4b Rbm4b RNA binding motif protein 4B	protein from Mus musculus	2.1e-29
BLAST match view associations BLAST with Rbm4b Rbm4b Rbm4b RNA binding motif protein 4B	gene from Rattus norvegicus	2.1e-29
BLAST match view associations BLAST with Rbm4b Rbm4b Rbm4b RNA-binding protein 4B	protein from Rattus norvegicus	2.1e-29
BLAST match view associations BLAST with RBM4 RBM4 RBM4 RNA-binding protein 4	protein from Bos taurus	2.1e-29
BLAST match view associations BLAST with RBM4 RBM4 RBM4 Uncharacterized protein	protein from Canis lupus familiaris	2.1e-29
BLAST match view associations BLAST with RBM4 RBM4 RBM4 RNA-binding protein 4	protein from Homo sapiens	2.1e-29
BLAST match view associations BLAST with RBM4 RBM4 RBM4 RNA-binding protein 4	protein from Homo sapiens	2.1e-29
BLAST match view associations BLAST with RBM4 RBM4 RBM4 RNA-binding protein 4	protein from Macaca fascicularis	2.1e-29
BLAST match view associations BLAST with rbm4.2 rbm4.2 rbm4.2 RNA binding motif protein 4.2	gene_product from Danio rerio	3.4e-29
BLAST match view associations BLAST with RBM4B RBM4B RBM4B RNA-binding protein 4B	protein from Sus scrofa	1.1e-25
BLAST match view associations BLAST with RBM4 RBM4 RBM4 RNA-binding protein 4	protein from Homo sapiens	1.6e-24
BLAST match view associations BLAST with rbm14b rbm14b rbm14b RNA binding motif protein 14b	gene_product from Danio rerio	2.4e-24
BLAST match view associations BLAST with rbm4.3 rbm4.3 rbm4.3 RNA binding motif protein 4.3	gene_product from Danio rerio	3.3e-24
BLAST match view associations BLAST with RBM4B RBM4B RBM4B RNA-binding protein 4B	protein from Homo sapiens	8.7e-24
BLAST match view associations BLAST with RBM4B RBM4B RBM4B RNA-binding protein 4B	protein from Homo sapiens	1.4e-23
BLAST match view associations BLAST with Rbm4 Rbm4 Rbm4 RNA binding motif protein 4	gene from Rattus norvegicus	1.4e-23
BLAST match view associations BLAST with RBM4 RBM4 RBM4 RNA-binding protein 4	protein from Homo sapiens	2.3e-23
BLAST match view associations BLAST with RBM4 RBM4 RBM4 Uncharacterized protein	protein from Sus scrofa	1.0e-22
BLAST match view associations BLAST with RBM14 RBM14 RBM14 RNA-binding protein 14	protein from Homo sapiens	1.0e-22
BLAST match view associations BLAST with RBM14 RBM14 RBM14 Uncharacterized protein	protein from Canis lupus familiaris	1.3e-22
BLAST match view associations BLAST with RBM14 RBM14 RBM14 RNA-binding protein 14	protein from Bos taurus	1.6e-22
BLAST match view associations BLAST with RBM14 RBM14 RBM14 RNA-binding protein 14	protein from Bos taurus	1.6e-22
BLAST match view associations BLAST with Rbm14 Rbm14 Rbm14 RNA binding motif protein 14	protein from Mus musculus	7.3e-22
BLAST match view associations BLAST with rbm14a rbm14a rbm14a RNA binding motif protein 14a	gene_product from Danio rerio	1.9e-18
BLAST match view associations BLAST with rnp-1 rnp-1 rnp-1	gene from Caenorhabditis elegans	4.7e-16
BLAST match view associations BLAST with RBM14 RBM14 RBM14 RNA-binding protein 14	protein from Homo sapiens	1.6e-15
BLAST match view associations BLAST with RBM14 RBM14 RBM14 RNA-binding protein 14	protein from Homo sapiens	8.8e-15
BLAST match view associations BLAST with RBM14-RBM4 RBM14-RBM4 RBM14-RBM4 Protein RBM14-RBM4	protein from Homo sapiens	8.8e-15
BLAST match view associations BLAST with PAB1 PAB1 PAB1 Polyadenylate-binding protein, cytoplasmic and nuclear	protein from Magnaporthe oryzae 70-15	5.7e-14
BLAST match view associations BLAST with pabpc1-a pabpc1-a pabpc1-a Polyadenylate-binding protein 1-A	protein from Xenopus laevis	2.7e-13
BLAST match view associations BLAST with Rox8 Rox8 Rox8	protein from Drosophila melanogaster	3.3e-13
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Gallus gallus	5.6e-13
BLAST match view associations BLAST with pabpc1A pabpc1A pabpc1A polyadenylate binding protein (PABP)	gene from Dictyostelium discoideum	6.0e-13
BLAST match view associations BLAST with pabpc1l pabpc1l pabpc1l poly(A) binding protein, cytoplasmic 1-like	gene_product from Danio rerio	9.0e-13
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Canis lupus familiaris	9.2e-13
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Sus scrofa	9.2e-13
BLAST match view associations BLAST with pabpc4 pabpc4 pabpc4 poly(A) binding protein, cytoplasmic 4 (inducible form)	gene_product from Danio rerio	9.4e-13
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Canis lupus familiaris	1.1e-12
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Poly(A) binding protein, cytoplasmic 4 (Inducible form), isoform CRA_e	protein from Homo sapiens	1.1e-12
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	1.2e-12
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Bos taurus	1.2e-12
BLAST match view associations BLAST with RBP31 RBP31 RBP31 AT4G24770	protein from Arabidopsis thaliana	1.2e-12
BLAST match view associations BLAST with PAB8 PAB8 PAB8 AT1G49760	protein from Arabidopsis thaliana	1.3e-12
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Gallus gallus	1.7e-12
BLAST match view associations BLAST with epabp epabp epabp Embryonic polyadenylate-binding protein	protein from Xenopus (Silurana) tropicalis	1.9e-12
BLAST match view associations BLAST with Pabpc1 Pabpc1 Pabpc1 poly(A) binding protein, cytoplasmic 1	protein from Mus musculus	2.0e-12
BLAST match view associations BLAST with Pabpc1 Pabpc1 Pabpc1 poly(A) binding protein, cytoplasmic 1	gene from Rattus norvegicus	2.0e-12
BLAST match view associations BLAST with DAZAP1 DAZAP1 DAZAP1 DAZ-associated protein 1	protein from Homo sapiens	2.4e-12
BLAST match view associations BLAST with PAB2 PAB2 PAB2 AT4G34110	protein from Arabidopsis thaliana	2.5e-12
BLAST match view associations BLAST with pabpc1b pabpc1b pabpc1b poly A binding protein, cytoplasmic 1 b	gene_product from Danio rerio	2.5e-12
BLAST match view associations BLAST with Pabpc6 Pabpc6 Pabpc6 poly(A) binding protein, cytoplasmic 6	gene from Rattus norvegicus	2.6e-12
BLAST match view associations BLAST with epabp-a epabp-a epabp-a Embryonic polyadenylate-binding protein A	protein from Xenopus laevis	3.2e-12
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Homo sapiens	3.7e-12
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Canis lupus familiaris	3.7e-12
BLAST match view associations BLAST with pabpc1a pabpc1a pabpc1a poly A binding protein, cytoplasmic 1 a	gene_product from Danio rerio	4.1e-12
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Bos taurus	4.1e-12
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Canis lupus familiaris	4.1e-12
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Homo sapiens	4.1e-12
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Sus scrofa	4.1e-12
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Pongo abelii	4.1e-12
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Sus scrofa	4.2e-12
BLAST match view associations BLAST with Pabpc2 Pabpc2 Pabpc2 poly(A) binding protein, cytoplasmic 2	gene from Rattus norvegicus	5.2e-12
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	5.3e-12
BLAST match view associations BLAST with epabp-b epabp-b epabp-b Embryonic polyadenylate-binding protein B	protein from Xenopus laevis	6.7e-12
BLAST match view associations BLAST with pabpc1-b pabpc1-b pabpc1-b Polyadenylate-binding protein 1-B	protein from Xenopus laevis	6.7e-12
BLAST match view associations BLAST with CG4612 CG4612 CG4612	protein from Drosophila melanogaster	1.0e-11
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Sus scrofa	1.3e-11
BLAST match view associations BLAST with PAB7 PAB7 PAB7 AT2G36660	protein from Arabidopsis thaliana	1.3e-11
BLAST match view associations BLAST with CG7903 CG7903 CG7903	protein from Drosophila melanogaster	1.5e-11
BLAST match view associations BLAST with PABPC3 PABPC3 PABPC3 Polyadenylate-binding protein 3	protein from Homo sapiens	1.6e-11
BLAST match view associations BLAST with CP31B CP31B CP31B AT5G50250	protein from Arabidopsis thaliana	1.8e-11
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Gallus gallus	2.3e-11
BLAST match view associations BLAST with PABPC3 PABPC3 PABPC3 Polyadenylate-binding protein 3	protein from Homo sapiens	2.5e-11
BLAST match view associations BLAST with PAB4 PAB4 PAB4 AT2G23350	protein from Arabidopsis thaliana	2.5e-11
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Bos taurus	4.7e-11
BLAST match view associations BLAST with PABPC3 PABPC3 PABPC3 Polyadenylate-binding protein 3	protein from Homo sapiens	7.9e-11
BLAST match view associations BLAST with Pabpc4l Pabpc4l Pabpc4l poly(A) binding protein, cytoplasmic 4-like	gene from Rattus norvegicus	8.0e-11
BLAST match view associations BLAST with RS31 RS31 RS31 AT3G61860	protein from Arabidopsis thaliana	9.9e-11
BLAST match view associations BLAST with PFL1170w PFL1170w PFL1170w polyadenylate-binding protein, putative	gene from Plasmodium falciparum	9.9e-11
BLAST match view associations BLAST with PFL1170w PFL1170w PFL1170w Polyadenylate-binding protein, putative	protein from Plasmodium falciparum 3D7	9.9e-11
BLAST match view associations BLAST with orf19.3037 orf19.3037 orf19.3037	gene_product from Candida albicans	1.0e-10