RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3721
(207 letters)
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 81.5 bits (201), Expect = 5e-21
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 103 AATSRKGPNTPTTKVFVGNLS-DNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DI 160
++ + P + ++VF+GNL+ + +V +F YG +V C + + + FV + +
Sbjct: 4 GSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNA 63
Query: 161 NKCIKELNGMMVDGKPMKVQISTSRVRQRPG 191
+ +G M+ G+ + + ++ R G
Sbjct: 64 RAAVAGEDGRMIAGQVLDINLAAEPKVNRSG 94
Score = 74.1 bits (182), Expect = 3e-18
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 37 KIFIGNVNP-GTSVELIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
++FIGN+N + +F KYGK+V C V K + FV N+ R A+ +G+++
Sbjct: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIA 76
Query: 96 EKPLKIEAATS----RKGPNT 112
+ L I A R GP++
Sbjct: 77 GQVLDINLAAEPKVNRSGPSS 97
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 74.3 bits (181), Expect = 2e-17
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 20/169 (11%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECD--------VVKNYGFVHMENDEEGRTAIKE 88
K+FIG ++ T+ E +R FE++G + +C + +GFV EE A+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 89 LNGQIVNEKPLKIEAATS----RKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 144
++ A + R G + K+FVG + ++T +R+ F YG +
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 127
Query: 145 DI--------VRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+I R + FV D D I V+G +V+ + S+
Sbjct: 128 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 176
Score = 40.8 bits (94), Expect = 3e-05
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY------GFVHIDSPDINKCIKELNG 169
K+F+G LS T +R F +GT+ +C ++R+ GF + + + +N
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 170 MMVDGKPMKVQISTSRVRQRPGVDEVVIGQKSVPVQAL 207
V+ + R+ + K + V +
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGI 105
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 70.8 bits (173), Expect = 6e-17
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 95 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 154
N K L+ E ++ P V+ G ++ +R+ F P+G ++E + G+
Sbjct: 1 NTKQLRFEDVVNQSSP--KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSF 58
Query: 155 I---DSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+ I +NG ++G +K
Sbjct: 59 VRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 92
Score = 62.7 bits (152), Expect = 7e-14
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--NYGFVHMENDEEGRTAIKE 88
SS ++ G + G + +L+R F +G+++E V Y FV E AI
Sbjct: 14 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS 73
Query: 89 LNGQIVNEKPLKIEAATSR 107
+NG + +K
Sbjct: 74 VNGTTIEGHVVKCYWGKES 92
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 65.0 bits (158), Expect = 7e-15
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKEL 89
K+ + N++ G S I+ LF ++G + + V + VH E + A+K+
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 90 NGQIVNEKPLKIEAATS 106
NG ++ +P+ I+ TS
Sbjct: 62 NGVPLDGRPMNIQLVTS 78
Score = 63.8 bits (155), Expect = 2e-14
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR-------NYGFVHIDSP-DINKCIKEL 167
K+ V NL +++ELF +GT+ + + VH + D K +K+
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 168 NGMMVDGKPMKVQISTS 184
NG+ +DG+PM +Q+ TS
Sbjct: 62 NGVPLDGRPMNIQLVTS 78
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 61.9 bits (150), Expect = 9e-14
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 112 TPTTKVFVGNLSDNTRAPEVRELFVPYG--TVVECDIVRNYGFVHIDSP-DINKCIKELN 168
T +++FVGNL + E+R+LF YG V + +GF+ +++ EL+
Sbjct: 6 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELD 65
Query: 169 GMMVDGKPMKVQISTSR 185
M + GK ++V+ +
Sbjct: 66 NMPLRGKQLRVRFACHS 82
Score = 61.1 bits (148), Expect = 2e-13
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKV--VECDVVKNYGFVHMENDEEGRTAIKELNGQIV 94
++F+GN+ P + E +R LFEKYGK V K +GF+ +E A EL+ +
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPL 69
Query: 95 NEKPLKIEAATSR 107
K L++ A
Sbjct: 70 RGKQLRVRFACHS 82
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 61.5 bits (149), Expect = 1e-13
Identities = 12/77 (15%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFVHMENDEEGRTAIKE 88
+++G+++P + ++ F G ++ V + Y +V+ + + A+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 89 LNGQIVNEKPLKIEAAT 105
+N ++ KP++I +
Sbjct: 62 MNFDVIKGKPVRIMWSQ 78
Score = 60.7 bits (147), Expect = 2e-13
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR--------NYGFVHIDSP-DINKCIKE 166
++VG+L + + E F P G ++ + R Y +V+ P D + +
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 167 LNGMMVDGKPMKVQIST 183
+N ++ GKP+++ S
Sbjct: 62 MNFDVIKGKPVRIMWSQ 78
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 61.5 bits (149), Expect = 2e-13
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---------YGFVHIDSP-DINK 162
T+K+ V N+ E+RELF +G + + + +GFV + D K
Sbjct: 7 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKK 66
Query: 163 CIKEL-NGMMVDGKPMKVQISTSRVRQR 189
L + + G+ + ++ + S V +
Sbjct: 67 AFNALCHSTHLYGRRLVLEWADSEVTVQ 94
Score = 57.6 bits (139), Expect = 5e-12
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN---------YGFVHMENDEEGRTAIK 87
KI + N+ + IR LF +G++ + K +GFV ++ + A
Sbjct: 10 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFN 69
Query: 88 EL-NGQIVNEKPLKIEAATSRK 108
L + + + L +E A S
Sbjct: 70 ALCHSTHLYGRRLVLEWADSEV 91
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 61.2 bits (148), Expect = 2e-13
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----------KNYGFVHMENDEEGRTAI 86
+FI N+N T+ E ++ +F K G + C + +GFV + E+ + A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 87 KELNGQIVNEKPLKIEAATSRKGP 110
K+L G V+ L++ + P
Sbjct: 61 KQLQGHTVDGHKLEVRISERATKP 84
Score = 58.5 bits (141), Expect = 2e-12
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 118 FVGNLSDNTRAPEVRELFVPYGTVVECDIV-----------RNYGFVHIDSP-DINKCIK 165
F+ NL+ +T ++ +F G + C I +GFV P K +K
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
Query: 166 ELNGMMVDGKPMKVQISTSRVR 187
+L G VDG ++V+IS +
Sbjct: 62 QLQGHTVDGHKLEVRISERATK 83
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 61.6 bits (149), Expect = 3e-13
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 14/108 (12%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----KNYGFVHMENDEEGRTAIKELNG 91
++I N+ + E + +F KYG + + V + +V E+ + + A L+G
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSG 68
Query: 92 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 139
V + L + + + TK + +++ L YG
Sbjct: 69 FNVCNRYLVVLYYNANRAFQKMDTKK---------KEEQLKLLKEKYG 107
Score = 61.6 bits (149), Expect = 3e-13
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 108 KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----RNYGFVHIDSP-DIN 161
+ P +++ NL A E+ ++F YG + + + R +V + D
Sbjct: 1 RLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAK 60
Query: 162 KCIKELNGMMVDGKPMKVQISTSR 185
L+G V + + V +
Sbjct: 61 NACDHLSGFNVCNRYLVVLYYNAN 84
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 61.1 bits (148), Expect = 3e-13
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 163
+ ++VGNLS T ++ ELF G + + + + + FV S D
Sbjct: 6 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENA 65
Query: 164 IKELNGMMVDGKPMKVQISTSRVRQR 189
++ +NG +D + ++ R
Sbjct: 66 MRYINGTRLDDRIIRTDWDAGFKEGR 91
Score = 59.2 bits (143), Expect = 1e-12
Identities = 15/80 (18%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
+++GN++ T+ E I LF K G + + + + + FV + + A++
Sbjct: 9 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 68
Query: 89 LNGQIVNEKPLKIEAATSRK 108
+NG ++++ ++ + K
Sbjct: 69 INGTRLDDRIIRTDWDAGFK 88
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 61.3 bits (148), Expect = 3e-13
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 8/97 (8%)
Query: 103 AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVH 154
++ + P +P F+GNL + ++E F + +G+
Sbjct: 4 GSSGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAE 63
Query: 155 IDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPG 191
+ D LN + K ++V ++ + G
Sbjct: 64 FEDLDSLLSALSLNEESLGNKRIRVDVADQAQDKDSG 100
Score = 45.5 bits (107), Expect = 2e-07
Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK------NYGFVHMEND-EEGRTAIK 87
+ F+GN+ + E I+ F + GF + E + + +
Sbjct: 15 PYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 74
Query: 88 ELNGQIVNEKPLKIEAATSRKGPNT 112
LN + + K ++++ A + ++
Sbjct: 75 SLNEESLGNKRIRVDVADQAQDKDS 99
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 60.4 bits (146), Expect = 4e-13
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 28 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------YGFVHMENDEE 81
P G IFI N++ + + F +G ++ C VV + YGFVH E E
Sbjct: 1 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 60
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSRK 108
AI+++NG ++N++ + + SRK
Sbjct: 61 AERAIEKMNGMLLNDRKVFVGRFKSRK 87
Score = 55.4 bits (133), Expect = 3e-11
Identities = 14/81 (17%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDINKCI 164
+ +F+ NL + + + F +G ++ C +V + + I
Sbjct: 6 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAI 65
Query: 165 KELNGMMVDGKPMKVQISTSR 185
+++NGM+++ + + V SR
Sbjct: 66 EKMNGMLLNDRKVFVGRFKSR 86
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 59.3 bits (143), Expect = 1e-12
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDI---NKCIK 165
G PTT+++VG L NT + F +G++ D V+ F +I +
Sbjct: 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACA 71
Query: 166 ELNGMMVDGKPMKVQISTSRVRQRPG 191
++ G + G ++++ ++ G
Sbjct: 72 KMRGFPLGGPDRRLRVDFAKSGPSSG 97
Score = 50.4 bits (120), Expect = 3e-09
Identities = 13/79 (16%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKV--VECDVVKNYGFVHMENDEEGRTAIKELNGQ 92
T ++++G + P TS+ + F+++G + ++ ++ ++ E+ + + A ++ G
Sbjct: 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGF 76
Query: 93 IVN--EKPLKIEAATSRKG 109
+ ++ L+++ A S
Sbjct: 77 PLGGPDRRLRVDFAKSGPS 95
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 58.9 bits (142), Expect = 2e-12
Identities = 19/83 (22%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDINKCI 164
+ ++ V N+ R P++R++F +G +++ +I+ N +S D ++
Sbjct: 9 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAR 68
Query: 165 KELNGMMVDGKPMKVQISTSRVR 187
++L+G +V+G+ ++V +T+RV
Sbjct: 69 EKLHGTVVEGRKIEVNNATARVM 91
Score = 56.2 bits (135), Expect = 2e-11
Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRT 84
S ++ + N+ +R +F ++GK+++ +++ K +GFV EN +
Sbjct: 7 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 66
Query: 85 AIKELNGQIVNEKPLKIEAATSRKGPN 111
A ++L+G +V + +++ AT+R N
Sbjct: 67 AREKLHGTVVEGRKIEVNNATARVMTN 93
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 58.5 bits (141), Expect = 2e-12
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---------YGFVHIDSPDINKCIK 165
T + V L + E+ LF G + C I+R+ D + IK
Sbjct: 3 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 62
Query: 166 ELNGMMVDGKPMKVQISTSRVRQRPG 191
LNG+ V K +KV + RPG
Sbjct: 63 VLNGITVRNKRLKVSYA------RPG 82
Score = 55.0 bits (132), Expect = 4e-11
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY--------GFVHMENDEEGRTAIKE 88
+ + + + + LF G + C ++++Y FV ++ + + AIK
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 89 LNGQIVNEKPLKIEAAT 105
LNG V K LK+ A
Sbjct: 64 LNGITVRNKRLKVSYAR 80
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 58.4 bits (141), Expect = 2e-12
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 109 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-D 159
G + T ++V NL ++ +F YG++V+ +I+ R FV + +
Sbjct: 1 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 60
Query: 160 INKCIKELNGMMVDG--KPMKVQI 181
+ I LN ++ +G +P+ V++
Sbjct: 61 AQEAISALNNVIPEGGSQPLSVRL 84
Score = 57.7 bits (139), Expect = 5e-12
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKE 88
+++ N+ + + + +F KYG +V+ +++ + FV EE + AI
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 67
Query: 89 LNGQIVN--EKPLKIEAA 104
LN I +PL + A
Sbjct: 68 LNNVIPEGGSQPLSVRLA 85
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 57.8 bits (139), Expect = 3e-12
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI---DSPDINKCIKELNG-MM 171
K+++GNLS A ++R+LF + ++ G+ + D + I+ L+G +
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVE 62
Query: 172 VDGKPMKVQISTSRVRQR 189
+ GK M+V S S+ + R
Sbjct: 63 LHGKIMEVDYSVSK-KLR 79
Score = 56.6 bits (136), Expect = 8e-12
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQI- 93
K++IGN++P + + +R LF + V+ Y FV + AI+ L+G++
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVE 62
Query: 94 VNEKPLKIEAATSRK 108
++ K ++++ + S+K
Sbjct: 63 LHGKIMEVDYSVSKK 77
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 57.8 bits (139), Expect = 5e-12
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 103 AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVH 154
A + ++GP +F+ +L ++ ++F+P+G VV + + +GFV
Sbjct: 9 AGSQKEGP--EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 66
Query: 155 IDSP-DINKCIKELNGMMVDGKPMKVQISTSRVRQR 189
D+P I+ +NG + K +KVQ+ S+ +
Sbjct: 67 YDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 102
Score = 51.2 bits (122), Expect = 2e-09
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKE 88
+FI ++ + + +F +G VV V K +GFV +N + AI+
Sbjct: 20 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 79
Query: 89 LNGQIVNEKPLKIEAATSRK 108
+NG + K LK++ S+
Sbjct: 80 MNGFQIGMKRLKVQLKRSKN 99
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 56.9 bits (137), Expect = 7e-12
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKE 88
K+FIG + + + ++ L +G + ++V K Y F + AI
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 89 LNGQIVNEKPLKIEAATSRK 108
LNG + +K L ++ A+
Sbjct: 63 LNGMQLGDKKLLVQRASVGA 82
Score = 55.8 bits (134), Expect = 2e-11
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKE 166
K+F+G L + +V+EL +G + ++V + Y F ++ I
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 167 LNGMMVDGKPMKVQISTSRVRQ 188
LNGM + K + VQ ++ +
Sbjct: 63 LNGMQLGDKKLLVQRASVGAKN 84
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 57.1 bits (137), Expect = 9e-12
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTV-VECDIVRNYGFVHIDSP-DINKCIKELN 168
++ ++ + V NL ++ EV +L Y D + FV + + I+ +
Sbjct: 2 SSGSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFH 61
Query: 169 GMMVDGKPMKVQISTSRVRQRPG 191
GK + VQ+ + G
Sbjct: 62 QYSFRGKDLIVQLQPTDALLCSG 84
Score = 55.5 bits (133), Expect = 3e-11
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYG-KVVECDVVKNYGFVHMENDEEGRTAIKELN 90
S G+ I + N+ ++ + + L + Y K D K FV + N E+ + AI+ +
Sbjct: 2 SSGSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFH 61
Query: 91 GQIVNEKPLKIEAATSR----KGPNT 112
K L ++ + GP++
Sbjct: 62 QYSFRGKDLIVQLQPTDALLCSGPSS 87
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 56.6 bits (136), Expect = 1e-11
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKE 88
+++G ++ S L+ LF + G VV + + YGFV ++E+ AIK
Sbjct: 11 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 70
Query: 89 LNGQIVNEKPLKIEAATSRK 108
++ + KP+++ A++
Sbjct: 71 MDMIKLYGKPIRVNKASAHN 90
Score = 55.8 bits (134), Expect = 2e-11
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 109 GP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS 157
GP V+VG L + P + ELF+ G VV + + YGFV S
Sbjct: 1 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 60
Query: 158 P-DINKCIKELNGMMVDGKPMKVQISTSR 185
D + IK ++ + + GKP++V +++
Sbjct: 61 EEDADYAIKIMDMIKLYGKPIRVNKASAH 89
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 56.6 bits (136), Expect = 2e-11
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 102 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVH 154
++ S G + + V + D E+ YG V E ++ N +V
Sbjct: 15 NSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVK 74
Query: 155 IDSPDIN-KCIKELNGMMVDGKPMKVQIS 182
+ K + +LN +G+P+ ++S
Sbjct: 75 FRREEDAEKAVIDLNNRWFNGQPIHAELS 103
Score = 48.5 bits (115), Expect = 1e-08
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 50 ELIRPLFEKYGKVVECDVVKN-------YGFVHMENDEEGRTAIKELNGQIVNEKPLKIE 102
E+ + EKYG+V E +V N +V +E+ A+ +LN + N +P+ E
Sbjct: 42 EVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAE 101
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 55.8 bits (134), Expect = 2e-11
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDV--VKNYGFVHMENDEEGRTAIKELNGQIV 94
+++ N+ TS E+I F V +++Y FVH N E+ A+K LNG+++
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVL 69
Query: 95 NEKPLKIEAATSRK 108
+ P+++ A
Sbjct: 70 DGSPIEVTLAKPVD 83
Score = 53.1 bits (127), Expect = 2e-10
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI--VRNYGFVHIDSP-DINKCIKELN 168
+ ++V NL +T + + F + +R+Y FVH + D + +K LN
Sbjct: 6 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALN 65
Query: 169 GMMVDGKPMKVQISTSRVRQ 188
G ++DG P++V ++ +
Sbjct: 66 GKVLDGSPIEVTLAKPVDKD 85
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 56.2 bits (135), Expect = 2e-11
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 96 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI--------V 147
EK L+ +K K+F+G LS T +R + +G + +C +
Sbjct: 2 EKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRS 61
Query: 148 RNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
R +GFV S +DG+ ++ + + +R
Sbjct: 62 RGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR 99
Score = 46.6 bits (110), Expect = 9e-08
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDV--------VKNYGFVHMENDEEGRTAIKE 88
K+FIG ++ T+ E +R +E++GK+ +C V + +GFV + E A+
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-A 80
Query: 89 LNGQIVNEKPLKIEAATSRK 108
++ + ++ + A +R+
Sbjct: 81 ARPHSIDGRVVEPKRAVARE 100
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 55.8 bits (134), Expect = 2e-11
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC------DIVRNYGFVHIDSP-DINKC 163
+ ++VGNLS + + +LF G C Y FV D
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAA 64
Query: 164 IKELNGMMVDGKPMKVQISTSRVRQR 189
+ +NG + GK +KV +T+ Q+
Sbjct: 65 LAAMNGRKILGKEVKVNWATTPSSQK 90
Score = 54.3 bits (130), Expect = 1e-10
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVEC------DVVKNYGFVHMENDEEGRTAIKELN 90
+++GN++ + LI LF + G C Y FV + A+ +N
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMN 69
Query: 91 GQIVNEKPLKIEAATSRK 108
G+ + K +K+ AT+
Sbjct: 70 GRKILGKEVKVNWATTPS 87
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 55.5 bits (133), Expect = 3e-11
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN---------YGFVHMENDEEGRTAIKE 88
IFIGN++P +L+ F +G +++ + Y F++ + + AI+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 89 LNGQIVNEKPLKIEAATSRK 108
+NGQ + +P+ + A +
Sbjct: 61 MNGQYLCNRPITVSYAFKKD 80
Score = 52.4 bits (125), Expect = 4e-10
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 117 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---------YGFVHIDSP-DINKCIKE 166
+F+GNL + + F +G +++ + Y F++ S + I+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 167 LNGMMVDGKPMKVQISTSR 185
+NG + +P+ V + +
Sbjct: 61 MNGQYLCNRPITVSYAFKK 79
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 55.1 bits (132), Expect = 4e-11
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 106 SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY--------GFVHIDS 157
+R P+ P + V LS T ++RE+F YG + + IV + FV+ ++
Sbjct: 2 NRANPD-PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 60
Query: 158 P-DINKCIKELNGMMVDGKPMKV 179
D + + NGM +DG+ ++V
Sbjct: 61 VDDAKEAKERANGMELDGRRIRV 83
Score = 48.5 bits (115), Expect = 9e-09
Identities = 14/73 (19%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY--------GFVHMENDEEGRTAIKE 88
+ + ++ T+ +R +F KYG + + +V + FV+ EN ++ + A +
Sbjct: 11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 70
Query: 89 LNGQIVNEKPLKI 101
NG ++ + +++
Sbjct: 71 ANGMELDGRRIRV 83
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 55.1 bits (132), Expect = 5e-11
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGR 83
S G+ ++F+ N++ +S E + LF YG + E + + FV E
Sbjct: 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAV 64
Query: 84 TAIKELNGQIVNEKPLKIEAATSRK 108
A E++GQ+ + L + +T +K
Sbjct: 65 KAYAEVDGQVFQGRMLHVLPSTIKK 89
Score = 55.1 bits (132), Expect = 5e-11
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 163
+ ++FV NLS + ++ +LF YG + E + + FV P K
Sbjct: 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 66
Query: 164 IKELNGMMVDGKPMKVQISTSRVRQRPG 191
E++G + G+ + V ST +
Sbjct: 67 YAEVDGQVFQGRMLHVLPSTIKKEASQS 94
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 55.0 bits (132), Expect = 5e-11
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 102 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR-NYGFVHIDSP-- 158
+ TS+K + NLS N E++E+F + + G +I+
Sbjct: 6 DPCTSKK--VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSE 63
Query: 159 -DINKCIKELNGMMVDGKPMKVQISTSRVRQRPG 191
D K ++E G +DG+ + + + + G
Sbjct: 64 ADAEKNLEEKQGAEIDGRSVSLYYTGEK-GGTRG 96
Score = 53.1 bits (127), Expect = 3e-10
Identities = 8/76 (10%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYG---KVVECDVVKNYGFVHMENDEEGRTAIKELNGQI 93
+ N++ + + ++ +FE V + K ++ +++ + ++E G
Sbjct: 18 TLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 77
Query: 94 VNEKPLKIEAATSRKG 109
++ + + + + G
Sbjct: 78 IDGRSVSLYYTGEKGG 93
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 54.8 bits (131), Expect = 7e-11
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---------YGFVHIDSPDI 160
P P +++ NLS ++ LF + I +
Sbjct: 14 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIA 73
Query: 161 NKCIKELNGMMVDGKPMKVQISTSRVRQR 189
+ + +NG + GK + ++ ++ +QR
Sbjct: 74 WQALHLVNGYKLYGKILVIEFGKNK-KQR 101
Score = 50.6 bits (120), Expect = 3e-09
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 12/96 (12%)
Query: 25 RNMPGFSSVG----TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YG 72
R +P FSS +++ N++P + + LF ++ + +
Sbjct: 4 RKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQA 63
Query: 73 FVHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 108
F+ N E A+ +NG + K L IE ++K
Sbjct: 64 FITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK 99
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 54.3 bits (130), Expect = 8e-11
Identities = 12/80 (15%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY--------GFVHMENDEEGRTAIKE 88
+++G + +++ F +G + + + +Y FV E E+ AI
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 89 LNGQIVNEKPLKIEAATSRK 108
+N + + +++ A +
Sbjct: 67 MNESELFGRTIRVNLAKPMR 86
Score = 53.9 bits (129), Expect = 1e-10
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY--------GFVHIDSP-DINK 162
T ++VG L++ + F+P+G + + I +Y FV + D
Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAA 62
Query: 163 CIKELNGMMVDGKPMKVQISTSR 185
I +N + G+ ++V ++
Sbjct: 63 AIDNMNESELFGRTIRVNLAKPM 85
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 54.3 bits (130), Expect = 9e-11
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECD---VVKNYGFVHMENDEEGRTAIKE 88
S G+ +F+G + + +R F +YG V++ + + FV +D+ ++
Sbjct: 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG- 60
Query: 89 LNGQIVNEKPLKIEAATSRKGPNTP 113
I+ + I A + N+
Sbjct: 61 -EDLIIKGISVHISNAEPKHNSNSG 84
Score = 52.0 bits (124), Expect = 6e-10
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD---IVRNYGFVHIDSP-DINKCIKE 166
++ ++ VFVG + + E+RE F YG V++ R + FV
Sbjct: 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG- 60
Query: 167 LNGMMVDGKPMKVQISTSRVRQRPG 191
+++ G + + + + G
Sbjct: 61 -EDLIIKGISVHISNAEPKHNSNSG 84
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 54.3 bits (130), Expect = 1e-10
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 105 TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-----YGFVHIDSPD 159
R +++VGNL + R ++ ++F YG + + D+ + FV + P
Sbjct: 5 VIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPR 64
Query: 160 I-NKCIKELNGMMVDGKPMKVQISTSR 185
+ +G DG ++V+ S
Sbjct: 65 DAEDAVYGRDGYDYDGYRLRVEFPRSG 91
Score = 54.3 bits (130), Expect = 1e-10
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----KNYGFVHMENDEEGRTAIKELNG 91
+I++GN+ P + I +F KYG + + D+ + FV E+ + A+ +G
Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75
Query: 92 QIVNEKPLKIEAATSRKG 109
+ L++E S +G
Sbjct: 76 YDYDGYRLRVEFPRSGRG 93
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 53.9 bits (129), Expect = 1e-10
Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 113 PTTKVFVGNLSDNTRAPEVR----ELFVPYGTVVECDIV-----RNYGFVHIDSP-DINK 162
P +++ NL++ + E++ +F +G +++ + R FV
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 61
Query: 163 CIKELNGMMVDGKPMKVQISTSR 185
++ + G KPM++Q + +
Sbjct: 62 ALRSMQGFPFYDKPMRIQYAKTD 84
Score = 51.2 bits (122), Expect = 1e-09
Identities = 15/80 (18%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 37 KIFIGNVNPGTSVELIR----PLFEKYGKVVECDVV-----KNYGFVHMENDEEGRTAIK 87
I+I N+N + ++ +F ++G++++ V + FV + A++
Sbjct: 5 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 64
Query: 88 ELNGQIVNEKPLKIEAATSR 107
+ G +KP++I+ A +
Sbjct: 65 SMQGFPFYDKPMRIQYAKTD 84
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 53.6 bits (128), Expect = 1e-10
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDI---------VRNYGFVHIDSPDINKCIK 165
+++ N + +R+L V R D C++
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
Query: 166 ELNGMMVDGKPMKVQIS 182
+LNG+ ++G + ++S
Sbjct: 62 KLNGLKIEGYTLVTKVS 78
Score = 47.9 bits (113), Expect = 2e-08
Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
+++ N P + IR L + V + + + ++ + + E+ R ++
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
Query: 88 ELNGQIVNEKPLKIEAA 104
+LNG + L + +
Sbjct: 62 KLNGLKIEGYTLVTKVS 78
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 53.9 bits (129), Expect = 1e-10
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDI-NKCI 164
++V L E+ +LF YG ++ I+ R GF+ D + I
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 65
Query: 165 KELNGMMVDGKPMKVQIS 182
K LNG G + +
Sbjct: 66 KGLNGQKPSGATEPITVK 83
Score = 52.7 bits (126), Expect = 3e-10
Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 31 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEG 82
+S+ +++ + + + + LF +YG+++ ++ + GF+ + E
Sbjct: 2 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 61
Query: 83 RTAIKELNGQIVN--EKPLKIEAA 104
AIK LNGQ + +P+ ++ A
Sbjct: 62 EEAIKGLNGQKPSGATEPITVKFA 85
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 53.5 bits (128), Expect = 1e-10
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDINKCIKEL 167
K+F+G LS T +R F +GT+ +C ++ R +GFV + +
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 168 NGMMVDGKPMKVQISTS 184
VDG+ ++ + + S
Sbjct: 68 RPHKVDGRVVEPKRAVS 84
Score = 48.9 bits (116), Expect = 7e-09
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKE 88
K+FIG ++ T+ E +R FE++G + +C V+ + +GFV EE A+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 66
Query: 89 LNGQIVNEKPLKIEAATS 106
V+ + ++ + A S
Sbjct: 67 ARPHKVDGRVVEPKRAVS 84
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 53.6 bits (128), Expect = 1e-10
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY--------GFVHIDSP-DINKCIK 165
T + V L N E R LF G + C +VR+ GFV+ P D K I
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 166 ELNGMMVDGKPMKVQIS 182
LNG+ + K +KV +
Sbjct: 63 TLNGLRLQTKTIKVSYA 79
Score = 50.5 bits (120), Expect = 2e-09
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY--------GFVHMENDEEGRTAIKE 88
+ + + + E R LF G++ C +V++ GFV+ + ++ AI
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 89 LNGQIVNEKPLKIEAA 104
LNG + K +K+ A
Sbjct: 64 LNGLRLQTKTIKVSYA 79
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 52.7 bits (126), Expect = 3e-10
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---------YGFVHIDSPDINKC 163
+ V NLS++TR +++ELF P+G++ + ++ D +
Sbjct: 7 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARA 66
Query: 164 IKELNGMMVDGKPMKVQISTSR 185
I ++G D + V+ +
Sbjct: 67 IAGVSGFGYDHLILNVEWAKPS 88
Score = 49.7 bits (118), Expect = 5e-09
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
I + N++ T ++ LF +G + + K+ + F+ E+ AI
Sbjct: 10 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 69
Query: 89 LNGQIVNEKPLKIEAATSR 107
++G + L +E A
Sbjct: 70 VSGFGYDHLILNVEWAKPS 88
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 54.1 bits (129), Expect = 3e-10
Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 14/124 (11%)
Query: 77 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFV 136
+ D G+TA + Q+ ++ I P+ + V + ++R+LF
Sbjct: 9 QYDPYGQTAQLQ---QLQQQQQQHIPPTQMNPEPDVLR-NLMVNYIPTTVDEVQLRQLFE 64
Query: 137 PYGTVVECDIVRNYGFVHI---------DSPDINKCIKELNGMMVDGKPMKVQISTSRVR 187
YG + IV + + I LNG + K +KV ++ S
Sbjct: 65 RYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASG-H 123
Query: 188 QRPG 191
QRPG
Sbjct: 124 QRPG 127
Score = 45.7 bits (107), Expect = 4e-07
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY--------GFVHMENDEEGRTAIKE 88
+ + + +R LFE+YG + +V + GFV ++ + AI
Sbjct: 44 NLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG 103
Query: 89 LNGQIVNEKPLKIEAATSRK 108
LNG + K LK+ A S
Sbjct: 104 LNGFNILNKRLKVALAASGH 123
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 52.4 bits (125), Expect = 4e-10
Identities = 14/84 (16%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 32 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGR 83
SV + +F+ +++ + I+ F YG++ + + Y V E ++
Sbjct: 4 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQAL 63
Query: 84 TAIKELNGQIVNEKPLKIEAATSR 107
A + LNG + + ++++ +
Sbjct: 64 AAKEALNGAEIMGQTIQVDWCFVK 87
Score = 51.3 bits (122), Expect = 1e-09
Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 9/83 (10%)
Query: 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---------YGFVHIDSPDINK 162
+FV ++ + + E++E F YG + + + +
Sbjct: 5 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALA 64
Query: 163 CIKELNGMMVDGKPMKVQISTSR 185
+ LNG + G+ ++V +
Sbjct: 65 AKEALNGAEIMGQTIQVDWCFVK 87
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 52.9 bits (126), Expect = 4e-10
Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 4/90 (4%)
Query: 106 SRKGPNTPTT--KVFVGNLSDNTRAPEVRELF-VPYGTVVECDIVRNYGFVHIDSP-DIN 161
S GP T + +V V L + ++++ G V D+
Sbjct: 5 SSGGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDME 64
Query: 162 KCIKELNGMMVDGKPMKVQISTSRVRQRPG 191
+++L+ + + G
Sbjct: 65 YALRKLDDTKFRSHEGETSYIRVYPERSSG 94
Score = 47.5 bits (112), Expect = 3e-08
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK-NYGFVHMENDEEGRTAIKELNGQIV 94
F++ + + P S + ++ + G V DV K G V E+ A+++L+
Sbjct: 16 FRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 75
Query: 95 NEKPLKIEAATSRK 108
+
Sbjct: 76 RSHEGETSYIRVYP 89
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 51.7 bits (123), Expect = 5e-10
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR--------NYGFVHIDSPDINKCIKEL 167
K+FVG LS NT +V+ F +G V + ++ +GFV +S DI + + E+
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 168 NGMMVDGKPMKVQ 180
+ ++ K ++ +
Sbjct: 61 HFHEINNKMVECK 73
Score = 47.0 bits (111), Expect = 3e-08
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFVHMENDEEGRTAIKE 88
KIF+G ++ T+VE ++ FE++GKV + ++ +GFV E+++ E
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC-E 59
Query: 89 LNGQIVNEKPLKIEAA 104
++ +N K ++ + A
Sbjct: 60 IHFHEINNKMVECKKA 75
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 52.0 bits (124), Expect = 5e-10
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 6/89 (6%)
Query: 107 RKGPNTPTTKVFVGNL-SDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCI- 164
+KG V + + ++ +L P+G + I+ I+
Sbjct: 1 QKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQA 60
Query: 165 ----KELNGMMVDGKPMKVQISTSRVRQR 189
+V GKP++V +S R +
Sbjct: 61 AVDYYTTTPALVFGKPVRVHLSQKYKRIK 89
Score = 44.7 bits (105), Expect = 3e-07
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 38 IFIGNVNPG-TSVELIRPLFEKYGKVVECDV--VKNYGFVHMENDEEGRTAIK--ELNGQ 92
+ I + G + L E +G + + N F+ M E+ + A+
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPA 70
Query: 93 IVNEKPLKIEAATSRK 108
+V KP+++ + K
Sbjct: 71 LVFGKPVRVHLSQKYK 86
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 51.6 bits (123), Expect = 6e-10
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP---DINKCIKELNG 169
++V + +R F P+G +++ + + ++ + ELNG
Sbjct: 4 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNG 61
Query: 170 MMVDGKPMKVQISTSR 185
V+ +KV I+ +
Sbjct: 62 TQVESVQLKVNIARKQ 77
Score = 49.3 bits (117), Expect = 6e-09
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGF--VHMENDEEGRTAIKELNGQIV 94
+++ + + L+R F +G +++ + V E E A+ ELNG V
Sbjct: 7 TLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQV 64
Query: 95 NEKPLKIEAATSR 107
LK+ A +
Sbjct: 65 ESVQLKVNIARKQ 77
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 51.9 bits (124), Expect = 1e-09
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV----KNYGFVHMENDEEG 82
M G S V +I + N+ +++++ +F K+G V++ + + +
Sbjct: 1 MAGQSPV--LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 58
Query: 83 RTAIKELNGQIVNEKPLKIEAATSRK 108
+ A L+GQ + + S+
Sbjct: 59 QHAKLSLDGQNIYNACCTLRIDFSKL 84
Score = 50.4 bits (120), Expect = 4e-09
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----RNYGFVHIDSP-DINKCIKE 166
+P ++ V NL + ++F +GTV++ + + P
Sbjct: 5 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 64
Query: 167 LNGMMVDGKPMKVQISTSRVRQ 188
L+G + ++I S++
Sbjct: 65 LDGQNIYNACCTLRIDFSKLTS 86
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 51.7 bits (123), Expect = 1e-09
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 7/88 (7%)
Query: 32 SVGTFKIFIGNVNP-----GTSVELIRPLFEKYGKVVECDV--VKNYGFVHMENDEEGRT 84
S G+ + N + LF Y K ++ N
Sbjct: 2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAAD 61
Query: 85 AIKELNGQIVNEKPLKIEAATSRKGPNT 112
A L+ K +K+ A + ++
Sbjct: 62 ARLRLHKTEFLGKEMKLYFAQTLHIGSS 89
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 51.3 bits (122), Expect = 1e-09
Identities = 12/92 (13%), Positives = 31/92 (33%), Gaps = 17/92 (18%)
Query: 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR-----------------NYGFV 153
++ + ++V L+D+ ++ + F G V +
Sbjct: 5 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVS 64
Query: 154 HIDSPDINKCIKELNGMMVDGKPMKVQISTSR 185
+ D P ++ +G G +KV ++ +
Sbjct: 65 YEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK 96
Score = 47.1 bits (111), Expect = 5e-08
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 16/92 (17%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN----------------YGFVHMENDE 80
I++ +N +++ + F++ G V V E+
Sbjct: 10 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP 69
Query: 81 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNT 112
+ A++ +G+ LK+ A + N+
Sbjct: 70 TAKAAVEWFDGKDFQGSKLKVSLARKKPPMNS 101
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 50.7 bits (121), Expect = 2e-09
Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 163
T+ + V L T +++E F +G V+ + ++ +GFV K
Sbjct: 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 66
Query: 164 IKELNGMMVDGKPMKVQISTSR 185
+ + + + DG+ ++ S+
Sbjct: 67 MSQRHMI--DGRWCDCKLPNSK 86
Score = 48.4 bits (115), Expect = 1e-08
Identities = 12/85 (14%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAI 86
T + + + T+ + ++ F +G+V+ V K+ +GFV E +
Sbjct: 8 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 67
Query: 87 KELNGQIVNEKPLKIEAATSRKGPN 111
+ + +++ + + S++ +
Sbjct: 68 SQRH--MIDGRWCDCKLPNSKQSQD 90
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 50.6 bits (120), Expect = 3e-09
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI--VRNYGFVHIDSP-DINKCIKE 166
+ + V V L ++ ++ E +GT+ + + V ++ +C+
Sbjct: 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTF 70
Query: 167 L--NGMMVDGKPMKVQISTSRVRQRPG 191
+ + G+ STS+ RPG
Sbjct: 71 AADVPVYIAGQQAFFNYSTSKRITRPG 97
Score = 44.4 bits (104), Expect = 5e-07
Identities = 8/75 (10%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY--GFVHMENDEEGRTAIKELNGQ--I 93
+ + + + EK+G + ++ V EN + + +
Sbjct: 18 VHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVY 77
Query: 94 VNEKPLKIEAATSRK 108
+ + +TS++
Sbjct: 78 IAGQQAFFNYSTSKR 92
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 50.4 bits (120), Expect = 3e-09
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPDINKCIK 165
VF L+ R ++ + F G V + I+ + +V
Sbjct: 18 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI 77
Query: 166 ELNGMMVDGKPMKVQISTSR 185
L G + G P+ VQ S +
Sbjct: 78 GLTGQRLLGVPIIVQASQAE 97
Score = 45.4 bits (107), Expect = 2e-07
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKE 88
+F + + F GKV + ++ K +V + AI
Sbjct: 20 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG- 78
Query: 89 LNGQIVNEKPLKIEAATSRK 108
L GQ + P+ ++A+ + K
Sbjct: 79 LTGQRLLGVPIIVQASQAEK 98
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 49.6 bits (118), Expect = 4e-09
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPDINKCIKEL 167
K+F+G LS T +RE F +G V EC ++R+ +GFV +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 168 NGMMVDGKPMKVQI 181
+ +D K + ++
Sbjct: 62 SRHELDSKTIDPKV 75
Score = 48.8 bits (116), Expect = 7e-09
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+FIG ++ T+ E +R F ++G+V EC V+++ +GFV + +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA- 60
Query: 89 LNGQIVNEKPLKIEAA 104
+ ++ K + + A
Sbjct: 61 QSRHELDSKTIDPKVA 76
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 50.1 bits (119), Expect = 5e-09
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 35 TFKIFIGNVNPGTSVELIRPLFEKYGKV--VECDVVKNYGFVHMENDEEGRTAIKELNG- 91
+ + G + G S + P+ EK G V + K Y F EE + A LNG
Sbjct: 20 SLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGK 79
Query: 92 QIVNEKPLKI 101
++V++ KI
Sbjct: 80 EVVDDLGQKI 89
Score = 48.6 bits (115), Expect = 2e-08
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTV--VECDIVRNYGFVHIDSP-DINKCIKELN 168
T + V G L + ++ + G V + + Y F + + + LN
Sbjct: 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLN 77
Query: 169 G-MMVDGKPMKVQISTSRVRQR 189
G +VD K+ + + V +
Sbjct: 78 GKEVVDDLGQKITLYLNFVEKV 99
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 48.6 bits (115), Expect = 9e-09
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPDINKCIKEL 167
K+FVG + ++T +R+ F YG + +I+ + + FV D D I
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 63
Query: 168 NGMMVDGKPMKVQIS 182
V+G +V+ +
Sbjct: 64 KYHTVNGHNCEVRKA 78
Score = 42.4 bits (99), Expect = 2e-06
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
KIF+G + T +R FE+YGK+ +++ + + FV + D + I
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD-DHDSVDKIVI 62
Query: 89 LNGQIVNEKPLKIEAA 104
VN ++ A
Sbjct: 63 QKYHTVNGHNCEVRKA 78
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 49.4 bits (117), Expect = 9e-09
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVVKNYGFVHMENDEEGRTAIKE 88
KIF+G + T+ +R FE +G + + + YGFV M + A K+
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 89 LNGQIVNEKPLKIEAATSRKGPNTPTTKVFVG 120
N I + + + A P + T +G
Sbjct: 72 PNPII-DGRKANVNLAYLGAKPRSLQTGFAIG 102
Score = 49.0 bits (116), Expect = 1e-08
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR--------NYGFVHIDSP-DIN 161
+T TK+FVG L +T +R+ F +G + E ++ YGFV +
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 162 KCIKELNGMMVDGKPMKVQISTSRVRQRP 190
+ K+ N ++ DG+ V ++ + R
Sbjct: 67 RACKDPNPII-DGRKANVNLAYLGAKPRS 94
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 48.4 bits (115), Expect = 1e-08
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIKE 88
KIF+G ++P T E IR F +G+V ++ + + F+ + +E + + E
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM-E 59
Query: 89 LNGQIVNEKPLKIEAA 104
V +I+ A
Sbjct: 60 KKYHNVGLSKCEIKVA 75
Score = 48.0 bits (114), Expect = 1e-08
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDINKCIKEL 167
K+FVG LS +T ++RE F +G V ++ R + F+ + K I E
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 168 NGMMVDGKPMKVQI 181
V ++++
Sbjct: 61 KYHNVGLSKCEIKV 74
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 48.6 bits (115), Expect = 1e-08
Identities = 13/80 (16%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----RNYGFVHIDSPDI-NKCIKEL 167
P+ + + N+ + +++ LF G VV+ R + + S + + + +L
Sbjct: 9 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDL 68
Query: 168 NGMMV-DGKPMKVQISTSRV 186
+ + + ++V S S +
Sbjct: 69 HNHDLGENHHLRVSFSKSTI 88
Score = 42.0 bits (98), Expect = 2e-06
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV----KNYGFVHMENDEEGRTAIKELNG-Q 92
+ + N+ P S E ++ LF G VV+ + + M + EE A+ +L+
Sbjct: 13 LHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHD 72
Query: 93 IVNEKPLKIEAATSR 107
+ L++ + S
Sbjct: 73 LGENHHLRVSFSKST 87
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 48.5 bits (115), Expect = 1e-08
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 12/87 (13%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV----------KNYGFVHMENDEEGRTAI 86
++FIG + E I K + V +V + + FV E+ A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 87 KELNGQIV--NEKPLKIEAATSRKGPN 111
++L + + ++ A +
Sbjct: 63 RKLMPGRIQLWGHQIAVDWAEPEIDVD 89
Score = 43.5 bits (102), Expect = 9e-07
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 13/84 (15%)
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----------RNYGFVHIDSP-DINKC 163
++F+G + + E+ E V IV R + FV +S
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Query: 164 IKELNG--MMVDGKPMKVQISTSR 185
++L + + G + V +
Sbjct: 62 RRKLMPGRIQLWGHQIAVDWAEPE 85
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 48.2 bits (114), Expect = 1e-08
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVEC--------DIVRNYGFVHIDSPDI-NKCIKE 166
K+FVG LS +T + ++F YG + E R +GFV ++ D +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 167 LNGMMVDGKPMKVQISTSRVRQR 189
+NG VDG+ ++V + R
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR 89
Score = 47.4 bits (112), Expect = 3e-08
Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 37 KIFIGNVNPGTSVELIRPLFE--------KYGKVVECDVVKNYGFVHMENDEEGRTAIKE 88
K+F+G ++ T+ + + +F K E + +GFV EN ++ + A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 89 LNGQIVNEKPLKIEAATSRK 108
+NG+ V+ + ++++ A
Sbjct: 67 MNGKSVDGRQIRVDQAGKSS 86
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 48.6 bits (115), Expect = 2e-08
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 115 TKVFVGNLS-DNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDSP-DINKCIKELNG 169
+ + V NL+ + + LF YG V I+ + V + + LNG
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNG 62
Query: 170 MMVDGKPMKVQISTSRVRQRP 190
+ GKP+++ +S + Q P
Sbjct: 63 HKLHGKPIRITLSKHQNVQLP 83
Score = 45.5 bits (107), Expect = 2e-07
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 34 GTFKIFIGNVNP-GTSVELIRPLFEKYGKVVECDVV---KNYGFVHMENDEEGRTAIKEL 89
G + + N+NP + + + LF YG V ++ K V M + + + A+ L
Sbjct: 1 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHL 60
Query: 90 NGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAP 129
NG ++ KP++I + + + TK + + + P
Sbjct: 61 NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKP 107
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 47.3 bits (112), Expect = 2e-08
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPDINKCIKEL 167
K+F+G LS +T ++++ F +G VV+C + + +GFV + + +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 168 NGMMVDGKPMKVQ 180
++GK + +
Sbjct: 61 KEHKLNGKVIDPK 73
Score = 46.5 bits (110), Expect = 5e-08
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
K+FIG ++ T+ + ++ F K+G+VV+C + + +GFV + E + +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM-D 59
Query: 89 LNGQIVNEKPLKIEAA 104
+N K + + A
Sbjct: 60 QKEHKLNGKVIDPKRA 75
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 47.2 bits (111), Expect = 3e-08
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR------NYGFVHIDSPDINKCIKELN 168
T V V NL + +V + F G ++ D+ + + D
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKT 60
Query: 169 GMMVDGKPMKVQIST 183
+V + V T
Sbjct: 61 HKVVGQNEIIVSHLT 75
Score = 35.6 bits (81), Expect = 5e-04
Identities = 9/75 (12%), Positives = 26/75 (34%), Gaps = 7/75 (9%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFVHMENDEEGRTAIKELN 90
+ + N+ + + F+ G ++ DV + + + AI +
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITK-T 60
Query: 91 GQIVNEKPLKIEAAT 105
++V + + + T
Sbjct: 61 HKVVGQNEIIVSHLT 75
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 47.5 bits (112), Expect = 4e-08
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 101 IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI--------VRNYGF 152
++A +++ PT +++ NL + E+ + P+G V+ I
Sbjct: 6 VQAQMAKQQEQDPT-NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFA 64
Query: 153 VHIDSPDINKCIKELNGMMVDGKPMKVQIS 182
+ I NG + P +
Sbjct: 65 RMESTEKCEAVIGHFNGKFIKTPPGVSAPT 94
Score = 42.1 bits (98), Expect = 3e-06
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKEL 89
++I N+ + + + + +G+V+ ++ + GF ME+ E+ I
Sbjct: 20 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF 79
Query: 90 NGQIVNEKPLKIEAA 104
NG+ + P
Sbjct: 80 NGKFIKTPPGVSAPT 94
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 47.1 bits (111), Expect = 4e-08
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 13/77 (16%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------------RNYGFVHIDSPDINK 162
+++VGN+ + + F + +N+ F+ S D
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 163 CIKELNGMMVDGKPMKV 179
+G++ G+ +K+
Sbjct: 63 QAMAFDGIIFQGQSLKI 79
Score = 43.6 bits (102), Expect = 7e-07
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 14/87 (16%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------------KNYGFVHMENDEEGR 83
++++GN+ G + E + F ++ KN+ F+ + +E
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 84 TAIKELNGQIVNEKPLKIEAATSRKGP 110
A+ +G I + LKI +
Sbjct: 63 QAMA-FDGIIFQGQSLKIRRPHDYQPL 88
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 47.4 bits (112), Expect = 4e-08
Identities = 8/87 (9%), Positives = 26/87 (29%), Gaps = 6/87 (6%)
Query: 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYG------FVHIDSPDINKCI 164
+T V + L ++ F P + + G V + +
Sbjct: 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAA 71
Query: 165 KELNGMMVDGKPMKVQISTSRVRQRPG 191
+ + + +++ ++++ G
Sbjct: 72 MAKDKANMQHRYVELFLNSTAGTSGSG 98
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 46.9 bits (110), Expect = 8e-08
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Query: 106 SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP---DINK 162
S T + NL T A E++E F +G++ + ++ + K
Sbjct: 2 SSGSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARK 61
Query: 163 CIKELNGMMVDGKPMKVQISTSRVRQRP 190
+ L P+ ++ + V
Sbjct: 62 AFRHLAYSKFHHVPLYLEWAPIGVFGAA 89
Score = 46.5 bits (109), Expect = 1e-07
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG--FVHMENDEEGRTAIKELNGQIV 94
I N+ GT I+ F ++G + + + V E R A + L
Sbjct: 12 VILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKF 71
Query: 95 NEKPLKIEAATSRKGPNTPTTK 116
+ PL +E A P K
Sbjct: 72 HHVPLYLEWAPIGVFGAAPQKK 93
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 46.1 bits (108), Expect = 8e-08
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINKCI 164
T +F+GNL+ N E++ + +V R +G+V +S + +
Sbjct: 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKA 70
Query: 165 KELNGMMVDGKPMKVQISTSR 185
EL G+ V G +K++ R
Sbjct: 71 LELTGLKVFGNEIKLEKPKGR 91
Score = 42.6 bits (99), Expect = 2e-06
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 27 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMEND 79
+ G S F +FIGN+NP SV ++ + + VV + +G+V E+
Sbjct: 5 VEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESA 64
Query: 80 EEGRTAIKELNGQIVNEKPLKIEAATSR 107
E+ A++ L G V +K+E R
Sbjct: 65 EDLEKALE-LTGLKVFGNEIKLEKPKGR 91
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 46.3 bits (109), Expect = 1e-07
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 37 KIFIGNVNPGTSVELIR--------PLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKE 88
+F+GN+ + E ++ + + E K YGF ++ E +A++
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 89 LNGQIVNEKPLKIEAATSRK 108
LNG+ + + L+++ A S K
Sbjct: 70 LNGREFSGRALRVDNAASEK 89
Score = 45.5 bits (107), Expect = 2e-07
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI---------DSPDI 160
+ VFVGN+ +++++F G VV +V + D
Sbjct: 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA 63
Query: 161 NKCIKELNGMMVDGKPMKVQISTSRVRQRP 190
++ LNG G+ ++V + S +
Sbjct: 64 LSAMRNLNGREFSGRALRVDNAASEKNKEE 93
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 45.4 bits (107), Expect = 1e-07
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 113 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPD-INKC 163
T + V N+ E+ + F Y + ++ V +S D
Sbjct: 8 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 67
Query: 164 IKELNGMMVDGKPMKVQI 181
+ +LN + + +K+ +
Sbjct: 68 VIDLNDRPIGSRKVKLVL 85
Score = 45.4 bits (107), Expect = 2e-07
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 34 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTA 85
G I + N+ S++ I F Y + + V E+ +E A
Sbjct: 8 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 67
Query: 86 IKELNGQIVNEKPLKIEAA 104
+ +LN + + + +K+
Sbjct: 68 VIDLNDRPIGSRKVKLVLG 86
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 44.5 bits (105), Expect = 4e-07
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 50 ELIRPLFEKYGKVVECDVVKN----YGFVHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 105
E +R K+G++ + + V + EE I+ L+G+ + + +A
Sbjct: 34 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 93
Query: 106 SR 107
Sbjct: 94 GT 95
Score = 43.0 bits (101), Expect = 2e-06
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 130 EVRELFVPYGTVVECDIVRN----YGFVHIDSP-DINKCIKELNGMMVDGKPMKVQISTS 184
++R +G + + + V P + + CI+ L+G G+ + Q
Sbjct: 35 DLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDG 94
Query: 185 RVRQR 189
+
Sbjct: 95 TTDYQ 99
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 44.5 bits (104), Expect = 4e-07
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 108 KGPNTPTTKVFVGNLSDNTRAPEVRELF--VPYGTVVECDIVRNYGFVHIDSP-DINKCI 164
K P+ + + L EV L T + +N F+ + + +
Sbjct: 2 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMV 61
Query: 165 KE--LNGMMVDGKPMKVQISTSR 185
+ +P+ +Q S +
Sbjct: 62 NYYSAVTPHLRNQPIYIQYSNHK 84
Score = 40.2 bits (93), Expect = 1e-05
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKV--VECDVVKNYGFVHMENDEEGRTAIKE--LNGQ 92
+ I + + + L +GKV + KN F+ + +E T +
Sbjct: 10 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTP 69
Query: 93 IVNEKPLKIEAATSR 107
+ +P+ I+ + +
Sbjct: 70 HLRNQPIYIQYSNHK 84
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 44.0 bits (103), Expect = 5e-07
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 112 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---------YGFVHIDSPDINK 162
T VF+ NLS ++ + E+ +G + +V + + K
Sbjct: 6 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQK 65
Query: 163 CIKELN------GMMVDGKPMKVQISTSR 185
C+ + G+ +DG+ +KV ++ +R
Sbjct: 66 CLAAASLEAEGGGLKLDGRQLKVDLAVTR 94
Score = 42.1 bits (98), Expect = 3e-06
Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFVHMENDEEGRTAIKE 88
+FI N++ + E + + +++G + VV + F E + +
Sbjct: 10 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 69
Query: 89 LN------GQIVNEKPLKIEAATSRK 108
+ G ++ + LK++ A +R
Sbjct: 70 ASLEAEGGGLKLDGRQLKVDLAVTRD 95
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 43.3 bits (101), Expect = 9e-07
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 111 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVV---ECDIVRNYGFVHIDSP-DINKCIKE 166
P +F+ NL + T + LF + + FV + N +
Sbjct: 5 QPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEA 64
Query: 167 LNGMMVD-GKPMKVQIS 182
L G + MK+ +
Sbjct: 65 LQGFKITPTHAMKITFA 81
Score = 37.1 bits (85), Expect = 2e-04
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVV---ECDVVKNYGFVHMENDEEGRTAIKELNG-Q 92
+F+ N+ T+ ++ LF ++ + FV + + A + L G +
Sbjct: 10 ILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFK 69
Query: 93 IVNEKPLKIEAA 104
I +KI A
Sbjct: 70 ITPTHAMKITFA 81
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 42.8 bits (100), Expect = 1e-06
Identities = 15/86 (17%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 32 SVGTFKIFIGNVNPGTSVE-LIRPLFEKYGKVVECDVV---------KNYGFVHMENDEE 81
++ +I I N++ E L+R FE +G + + ++ F+ EN +
Sbjct: 1 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDS 60
Query: 82 GRTAIKELNGQIVNEKPLKIEAATSR 107
A+ ++N ++ + + + A +
Sbjct: 61 AERAL-QMNRSLLGNREISVSLADKK 85
Score = 42.0 bits (98), Expect = 3e-06
Identities = 12/81 (14%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 115 TKVFVGNLS-DNTRAPEVRELFVPYGTVVECDIV---------RNYGFVHIDSPDINKCI 164
++ + NLS + +RE F +G++ + +I F+ ++ D +
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 165 KELNGMMVDGKPMKVQISTSR 185
++N ++ + + V ++ +
Sbjct: 65 LQMNRSLLGNREISVSLADKK 85
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 42.1 bits (98), Expect = 2e-06
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 117 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY--------GFVHIDSP-DINKCIKEL 167
+++ L T ++ +L PYG +V + + GFV DSP K + L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 168 NGMMVDGKPMK 178
V + K
Sbjct: 61 KASGVQAQMAK 71
Score = 41.7 bits (97), Expect = 3e-06
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY--------GFVHMENDEEGRTAIKEL 89
++I + PGT+ + + L + YGK+V + + GFV ++ + A+ L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 90 NGQIVNEKPLK 100
V + K
Sbjct: 61 KASGVQAQMAK 71
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 42.1 bits (98), Expect = 2e-06
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 15/79 (18%)
Query: 116 KVFVGNLSDNTRAPEVRELFV---PYGTVVECDIVRN--------YGFVHIDSP----DI 160
VFV LS PEV + +G + + I + + D
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 161 NKCIKELNGMMVDGKPMKV 179
+ I+ +N ++VDG+ +K
Sbjct: 70 LRAIQCVNNVVVDGRTLKA 88
Score = 38.3 bits (88), Expect = 7e-05
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 14/79 (17%)
Query: 37 KIFIGNVNPGTSVELIRPLFE---KYGKVVECDVVKN-----------YGFVHMENDEEG 82
+F+ ++ + + E K+GK+ + + + +V E+
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 83 RTAIKELNGQIVNEKPLKI 101
AI+ +N +V+ + LK
Sbjct: 70 LRAIQCVNNVVVDGRTLKA 88
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 42.2 bits (98), Expect = 3e-06
Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Query: 116 KVFVGNLSDNTRAPEVRELFVPYGTVVECDI--VRNYGFVHIDSPDINKCIKELNGMMVD 173
+V V L + ++++ G V D+ + D+ +++L+
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFR 61
Query: 174 GKPMKVQISTSRVRQRP 190
+ + P
Sbjct: 62 SHEGETAYIRVK-VDGP 77
Score = 40.3 bits (93), Expect = 1e-05
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 37 KIFIGNVNPGTSVE-LIRPLFEKYGKVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVN 95
++ + + P S + L + E G V E+ A+++L+
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFR 61
Query: 96 EKPLKIEAATSRK-GPNTP 113
+ + GP +P
Sbjct: 62 SHEGETAYIRVKVDGPRSP 80
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 40.3 bits (93), Expect = 8e-06
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 117 VFVGNLSDNTRAPEVRELFVPYGTV-VECDIVRNYGFVHIDSPD-INKCIKELNGMMVDG 174
+ + L + EV +L Y D + FV + + + I + +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLRE 60
Query: 175 KPMKVQISTS 184
+ + VQ+ +
Sbjct: 61 RELSVQLQPT 70
Score = 38.7 bits (89), Expect = 4e-05
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 38 IFIGNVNPGTSVELIRPLFEKYG-KVVECDVVKNYGFVHMENDEEGRTAIKELNGQIVNE 96
I I + + + + L Y K D K FV + N E+ AI + + E
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLRE 60
Query: 97 KPLKIEAATS 106
+ L ++ +
Sbjct: 61 RELSVQLQPT 70
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 39.3 bits (91), Expect = 2e-05
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 7/74 (9%)
Query: 114 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINKCIKE 166
V++ + +++E G V+ + + FV DS + K E
Sbjct: 6 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 65
Query: 167 LNGMMVDGKPMKVQ 180
G + +
Sbjct: 66 TPGQKYKETDLLIL 79
Score = 35.5 bits (81), Expect = 6e-04
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFVHMENDEEGRTAIKEL 89
++I +++ I+ E G+V+ + K FV ++ E + + E
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFV-ET 66
Query: 90 NGQIVNEKPLKIEAA 104
GQ E L I
Sbjct: 67 PGQKYKETDLLILFK 81
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 39.1 bits (90), Expect = 4e-05
Identities = 10/88 (11%), Positives = 25/88 (28%), Gaps = 8/88 (9%)
Query: 110 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPDIN 161
N+ + N+ + +V + V V + D
Sbjct: 4 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDA 63
Query: 162 KCIKELNGMMVDGKPMKVQISTSRVRQR 189
+ + L+ ++G+ V + T +
Sbjct: 64 RKSERLHRKKLNGREAFVHVVTLEDMRE 91
Score = 30.2 bits (67), Expect = 0.050
Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 9/81 (11%)
Query: 36 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFVHMENDEEGRTAIK 87
I N+ + + E V V +N+++ R +
Sbjct: 9 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSE- 67
Query: 88 ELNGQIVNEKPLKIEAATSRK 108
L+ + +N + + T
Sbjct: 68 RLHRKKLNGREAFVHVVTLED 88
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 38.6 bits (89), Expect = 6e-05
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 112 TPTTKVFVGNLSDNTRAPEVRELFVPY--GTVVECDIVRNYGFVHIDSP--DINKCIKEL 167
F G+L D T ++ LF + ++ G + + K+
Sbjct: 9 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDA 68
Query: 168 NGMMVDGKPMKVQI 181
N + + +V
Sbjct: 69 NNGNLQLRNKEVTW 82
Score = 38.6 bits (89), Expect = 7e-05
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 33 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFVH---MENDEEGRTAIKEL 89
+G F G+++ T E + LF +G++ D V+ E +E K+
Sbjct: 9 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDA 68
Query: 90 NGQIVNEKPLKIE 102
N + + ++
Sbjct: 69 NNGNLQLRNKEVT 81
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 36.5 bits (84), Expect = 2e-04
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 11/85 (12%)
Query: 115 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR--NYGFVHIDSPDINKCIKELNGMMV 172
T V V + A + F YG +++ + N+ + S + +G +
Sbjct: 5 TWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIF 63
Query: 173 DGKPMKVQISTSRVRQRPGVDEVVI 197
M + +P +D+ V+
Sbjct: 64 GESIM--------IGVKPCIDKNVM 80
Score = 34.9 bits (80), Expect = 8e-04
Identities = 9/65 (13%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 37 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFVHMENDEEGRTAIKELNGQIV 94
+ + ++ ++ F +YG +++ + N+ + ++ + R A+ +G+I
Sbjct: 6 WVTVFGFPQASASYILL-QFAQYGNILKHVMSNTGNWMHIRYQSKLQARKAL-SKDGRIF 63
Query: 95 NEKPL 99
E +
Sbjct: 64 GESIM 68
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 35.0 bits (80), Expect = 0.001
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 11/76 (14%)
Query: 119 VGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPDIN---KCIKEL 167
+ + +VR+ YG V +I R G + ++ + K ++ L
Sbjct: 19 LDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGL 78
Query: 168 NGMMVDGKPMKVQIST 183
G + + +
Sbjct: 79 TGRKFANRVVVTKYCD 94
Score = 34.6 bits (79), Expect = 0.002
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 10/69 (14%)
Query: 50 ELIRPLFEKYGKVVECDVVKN----------YGFVHMENDEEGRTAIKELNGQIVNEKPL 99
E +R KYG V ++ + FV + + + A++ L G+ + +
Sbjct: 29 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVV 88
Query: 100 KIEAATSRK 108
+
Sbjct: 89 VTKYCDPDS 97
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 31.1 bits (69), Expect = 0.024
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 113 PTTKVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIK-----E 166
+ + NL + + V +L PYG + ++R I+ +
Sbjct: 17 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCL 76
Query: 167 LNGMMVDGKPMKVQISTSR 185
+ G+ +KV +S
Sbjct: 77 KKALWFQGRCVKVDLSEKY 95
>d1omha_ d.89.1.5 (A:) TrwC relaxase {Escherichia coli [TaxId: 562]}
Length = 293
Score = 26.8 bits (59), Expect = 2.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 167 LNGMMVDGKPMKVQISTSRVRQRPGVDEVVIGQKSVPVQAL 207
L G + +G + + ++R G+D KSV +QAL
Sbjct: 59 LAGNIGEGHRIMRSATRQDSKERIGLDLTFSAPKSVSLQAL 99
>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Neisseria meningitidis, serogroup B [TaxId: 487]}
Length = 152
Score = 25.3 bits (54), Expect = 3.9
Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 2/58 (3%)
Query: 11 KVSRYSNNQINISCRNMPGFSSV--GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECD 66
+SRY I + G ++ T + + + G V D
Sbjct: 95 TLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWLD 152
>d1dcea2 b.7.4.1 (A:242-350) Rab geranylgeranyltransferase
alpha-subunit, insert domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 109
Score = 24.5 bits (53), Expect = 5.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 170 MMVDGKPMKVQISTSRVRQRPG 191
+MVD P+ V+ T R RP
Sbjct: 35 LMVDEAPLSVEWRTPDGRNRPS 56
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 24.8 bits (53), Expect = 6.5
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 146 IVRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVQISTSRVRQRPGVDEVV 196
I +++ H+ S D+ + G K I ++ + +V
Sbjct: 26 ITKHFELKHLSSGDL--LRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLV 74
>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 196
Score = 24.5 bits (53), Expect = 8.9
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 18 NQINISCRNMPGFSSVGTFKIFIGNVNPGTSVELI 52
+Q++I+ ++F VN G V
Sbjct: 110 SQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFF 144
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.392
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 782,446
Number of extensions: 37232
Number of successful extensions: 414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 177
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.1 bits)