BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3723
         (253 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1F4T|A Chain A, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
           With 4- Phenylimidazole Bound
 pdb|1F4T|B Chain B, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
           With 4- Phenylimidazole Bound
 pdb|1F4U|A Chain A, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
 pdb|1F4U|B Chain B, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
 pdb|1IO9|A Chain A, Thermophilic Cytochrome P450 (cyp119) From Sulfolobus
           Solfataricus: High Resolution Structural Origin Of Its
           Thermostability And Functional Properties
 pdb|1IO9|B Chain B, Thermophilic Cytochrome P450 (cyp119) From Sulfolobus
           Solfataricus: High Resolution Structural Origin Of Its
           Thermostability And Functional Properties
 pdb|1IO7|A Chain A, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
           Solfataricus: High Resolution Structural Origin Of Its
           Thermostability And Functional Properties
 pdb|1IO7|B Chain B, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
           Solfataricus: High Resolution Structural Origin Of Its
           Thermostability And Functional Properties
          Length = 368

 Score = 30.8 bits (68), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 12/118 (10%)

Query: 51  MIRTLRRDIARYNAGDEGIDE--------VLEESGWKLVH-GDVFRPPRHPRLFVSIIGS 101
           ++RT+R+   R   GD+ I+E               ++ H G+ F P R+P   +S  GS
Sbjct: 254 VMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDRNPNPHLS-FGS 312

Query: 102 GVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSARLYTTFKGRE 159
           G+ + L   +    A + +   S R        T  V   VL GY   RL    K  E
Sbjct: 313 GIHLCLGAPLARLEARIAIEEFSKRFRHIEILDTEKVPNEVLNGY--KRLVVRLKSNE 368


>pdb|1IO8|A Chain A, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
           Solfataricus: High Resolution Structural Origin Of Its
           Thermostability And Functional Properties
 pdb|1IO8|B Chain B, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
           Solfataricus: High Resolution Structural Origin Of Its
           Thermostability And Functional Properties
          Length = 368

 Score = 30.8 bits (68), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 12/118 (10%)

Query: 51  MIRTLRRDIARYNAGDEGIDE--------VLEESGWKLVH-GDVFRPPRHPRLFVSIIGS 101
           ++RT+R+   R   GD+ I+E               ++ H G+ F P R+P   +S  GS
Sbjct: 254 VMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDRNPNPHLS-FGS 312

Query: 102 GVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSARLYTTFKGRE 159
           G+ + L   +    A + +   S R        T  V   VL GY   RL    K  E
Sbjct: 313 GIHLCLGAPLARLEARIAIEEFSKRFRHIEILDTEKVPNEVLNGY--KRLVVRLKSNE 368


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.142    0.456 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,974,816
Number of Sequences: 62578
Number of extensions: 244893
Number of successful extensions: 559
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 559
Number of HSP's gapped (non-prelim): 2
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)