Query psy3723
Match_columns 253
No_of_seqs 114 out of 558
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 23:55:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1278|consensus 100.0 1.5E-92 3.1E-97 673.6 20.7 249 3-252 239-487 (628)
2 PF02990 EMP70: Endomembrane p 100.0 4.6E-82 1E-86 615.9 20.6 249 3-252 172-422 (521)
3 KOG1277|consensus 100.0 6E-79 1.3E-83 569.3 17.8 249 3-252 197-452 (593)
4 PF12670 DUF3792: Protein of u 95.5 0.39 8.5E-06 38.1 11.8 77 94-174 4-80 (116)
5 PF11368 DUF3169: Protein of u 92.9 6.5 0.00014 35.0 15.6 39 165-210 198-236 (248)
6 PF13347 MFS_2: MFS/sugar tran 84.2 22 0.00047 33.4 12.5 82 72-159 208-291 (428)
7 PF03806 ABG_transport: AbgT p 81.1 40 0.00087 33.6 13.2 88 132-222 302-402 (502)
8 PRK11339 abgT putative aminobe 80.1 12 0.00026 37.2 9.3 88 100-190 264-362 (508)
9 PF06796 NapE: Periplasmic nit 78.5 2.6 5.7E-05 29.5 3.0 36 156-191 14-49 (56)
10 TIGR00881 2A0104 phosphoglycer 77.7 45 0.00098 29.4 11.7 23 133-155 257-279 (379)
11 TIGR02972 TMAO_torE trimethyla 77.4 3 6.6E-05 28.2 2.9 36 156-191 6-41 (47)
12 TIGR02973 nitrate_rd_NapE peri 77.0 3.8 8.2E-05 27.1 3.2 35 157-191 2-36 (42)
13 TIGR00893 2A0114 d-galactonate 75.9 26 0.00056 30.9 9.6 26 134-159 257-282 (399)
14 TIGR00895 2A0115 benzoate tran 74.7 16 0.00035 32.6 8.0 28 131-158 288-315 (398)
15 COG2271 UhpC Sugar phosphate p 73.9 95 0.0021 30.6 14.1 159 35-221 186-371 (448)
16 PF06570 DUF1129: Protein of u 73.8 33 0.00072 29.6 9.4 45 109-156 91-135 (206)
17 PF07331 TctB: Tripartite tric 68.2 58 0.0013 25.7 9.3 24 155-179 109-132 (141)
18 PF02990 EMP70: Endomembrane p 63.8 1.6E+02 0.0035 29.2 13.2 132 92-226 332-484 (521)
19 PF07690 MFS_1: Major Facilita 63.8 19 0.00042 31.6 6.0 26 134-159 249-274 (352)
20 PRK11273 glpT sn-glycerol-3-ph 63.7 1E+02 0.0022 29.1 11.2 23 133-155 294-316 (452)
21 PF05297 Herpes_LMP1: Herpesvi 62.1 2.6 5.6E-05 39.1 0.0 33 149-181 126-158 (381)
22 KOG1278|consensus 61.5 1.7E+02 0.0037 29.8 12.4 130 74-222 391-545 (628)
23 TIGR00894 2A0114euk Na(+)-depe 60.3 53 0.0011 31.0 8.6 18 135-152 308-325 (465)
24 PLN00028 nitrate transmembrane 60.2 28 0.00061 33.4 6.8 22 135-156 299-320 (476)
25 PRK12307 putative sialic acid 60.1 81 0.0018 29.0 9.7 27 132-158 270-296 (426)
26 PF12271 Chs3p: Chitin synthas 58.8 1.6E+02 0.0034 27.5 15.8 120 101-221 118-245 (293)
27 PF09605 Trep_Strep: Hypotheti 57.6 74 0.0016 27.2 8.3 27 203-229 157-185 (186)
28 TIGR00901 2A0125 AmpG-related 56.4 1.5E+02 0.0032 26.5 12.5 22 139-160 256-277 (356)
29 PRK09528 lacY galactoside perm 55.8 1.3E+02 0.0028 27.9 10.3 33 129-161 263-295 (420)
30 PRK11102 bicyclomycin/multidru 54.1 56 0.0012 29.4 7.4 29 132-160 234-262 (377)
31 KOG1289|consensus 54.0 1.9E+02 0.0041 29.3 11.3 53 27-79 195-248 (550)
32 PRK11663 regulatory protein Uh 50.3 2.1E+02 0.0045 26.8 10.9 23 133-155 284-306 (434)
33 TIGR00819 ydaH p-Aminobenzoyl- 47.5 2.1E+02 0.0046 28.7 10.6 52 98-150 264-327 (513)
34 COG2056 Predicted permease [Ge 46.4 2.5E+02 0.0054 27.3 10.4 115 92-214 244-374 (444)
35 TIGR00902 2A0127 phenyl propri 45.7 87 0.0019 28.7 7.4 73 83-160 199-272 (382)
36 PF12822 DUF3816: Protein of u 44.5 1.4E+02 0.0031 24.2 7.8 30 133-162 72-101 (172)
37 PF12270 Cyt_c_ox_IV: Cytochro 43.6 1.5E+02 0.0032 24.5 7.5 29 28-57 33-61 (137)
38 TIGR00900 2A0121 H+ Antiporter 43.3 2.3E+02 0.0049 24.8 9.6 29 130-158 249-277 (365)
39 COG3086 RseC Positive regulato 42.3 92 0.002 26.1 6.1 66 88-162 69-136 (150)
40 PRK11085 magnesium/nickel/coba 41.1 35 0.00076 31.8 3.9 43 184-226 239-281 (316)
41 PRK11043 putative transporter; 40.7 1.9E+02 0.0041 26.4 8.8 29 133-161 243-271 (401)
42 PF11700 ATG22: Vacuole efflux 40.4 1.5E+02 0.0032 29.1 8.3 83 76-163 265-354 (477)
43 PF04246 RseC_MucC: Positive r 39.6 1.1E+02 0.0024 24.3 6.3 60 86-154 60-119 (135)
44 PF05977 MFS_3: Transmembrane 39.3 4E+02 0.0086 26.5 13.4 34 127-160 253-286 (524)
45 COG5393 Predicted membrane pro 38.7 67 0.0014 26.0 4.6 60 93-155 46-108 (131)
46 COG2814 AraJ Arabinose efflux 38.2 2.3E+02 0.0051 27.3 9.1 104 35-154 168-273 (394)
47 PRK06814 acylglycerophosphoeth 38.1 1.5E+02 0.0033 31.6 8.7 31 128-158 261-291 (1140)
48 KOG4580|consensus 38.1 1E+02 0.0022 24.5 5.4 60 128-190 43-109 (112)
49 PF06609 TRI12: Fungal trichot 37.7 96 0.0021 31.6 6.7 46 124-172 162-207 (599)
50 TIGR00890 2A0111 Oxalate/Forma 37.4 2.8E+02 0.0061 24.2 9.6 27 132-158 244-270 (377)
51 TIGR00710 efflux_Bcr_CflA drug 37.4 1.6E+02 0.0035 26.2 7.7 30 132-161 246-275 (385)
52 KOG0569|consensus 36.2 2.1E+02 0.0045 28.4 8.6 156 56-220 222-388 (485)
53 COG4459 NapE Periplasmic nitra 35.7 41 0.00088 23.8 2.6 33 158-190 19-51 (62)
54 TIGR00886 2A0108 nitrite extru 34.7 1.5E+02 0.0032 26.4 6.9 23 136-158 269-291 (366)
55 PRK08633 2-acyl-glycerophospho 34.6 4.3E+02 0.0094 28.0 11.3 27 130-156 271-297 (1146)
56 TIGR00885 fucP L-fucose:H+ sym 33.8 4E+02 0.0087 24.9 11.2 24 84-107 227-251 (410)
57 PF06679 DUF1180: Protein of u 33.7 44 0.00096 28.4 3.1 24 33-56 94-118 (163)
58 PRK10054 putative transporter; 33.5 2.2E+02 0.0048 26.3 8.1 31 130-160 246-276 (395)
59 KOG4812|consensus 32.6 2E+02 0.0043 26.2 7.0 70 99-185 157-245 (262)
60 PRK13105 ubiA prenyltransferas 32.6 2.7E+02 0.0058 25.5 8.3 31 45-79 38-72 (282)
61 PRK03545 putative arabinose tr 32.5 3.9E+02 0.0084 24.3 10.4 26 132-157 245-270 (390)
62 PRK03699 putative transporter; 32.1 4E+02 0.0086 24.4 9.7 26 136-161 249-274 (394)
63 PRK11715 inner membrane protei 31.7 3.3E+02 0.0072 26.7 9.1 70 126-208 355-424 (436)
64 PRK11273 glpT sn-glycerol-3-ph 31.3 1.5E+02 0.0032 28.0 6.6 29 126-154 291-319 (452)
65 PF09685 Tic20: Tic20-like pro 30.9 2.3E+02 0.0049 21.1 9.6 25 209-233 81-105 (109)
66 PRK11128 putative 3-phenylprop 30.4 3E+02 0.0064 25.1 8.3 27 133-159 245-271 (382)
67 PF06123 CreD: Inner membrane 30.1 3.8E+02 0.0082 26.3 9.2 69 127-208 350-418 (430)
68 PF06645 SPC12: Microsomal sig 30.0 1.1E+02 0.0024 22.5 4.3 27 127-153 10-36 (76)
69 COG5102 SFT2 Membrane protein 29.6 1.5E+02 0.0032 25.6 5.5 53 92-148 68-122 (201)
70 TIGR00383 corA magnesium Mg(2+ 29.4 47 0.001 30.2 2.8 31 196-226 253-283 (318)
71 COG1575 MenA 1,4-dihydroxy-2-n 28.8 4.9E+02 0.011 24.3 11.4 29 39-67 46-74 (303)
72 PF00528 BPD_transp_1: Binding 28.2 1.4E+02 0.003 23.8 5.2 76 142-224 2-77 (185)
73 PRK09546 zntB zinc transporter 27.7 61 0.0013 29.8 3.2 29 198-226 261-289 (324)
74 TIGR00883 2A0106 metabolite-pr 27.3 4.3E+02 0.0093 23.2 9.8 25 135-159 262-286 (394)
75 KOG0253|consensus 27.3 5.2E+02 0.011 25.7 9.3 110 93-221 134-247 (528)
76 PRK15402 multidrug efflux syst 27.3 2.9E+02 0.0063 25.3 7.7 24 137-160 260-283 (406)
77 COG4956 Integral membrane prot 27.1 5.5E+02 0.012 24.4 10.6 89 130-225 45-133 (356)
78 PF01544 CorA: CorA-like Mg2+ 27.1 46 0.001 29.2 2.2 30 197-226 230-259 (292)
79 TIGR02718 sider_RhtX_FptX side 26.9 4.8E+02 0.01 23.7 10.1 22 140-161 256-277 (390)
80 PRK11246 hypothetical protein; 26.6 86 0.0019 27.9 3.7 34 24-59 154-187 (218)
81 TIGR01272 gluP glucose/galacto 26.4 3.4E+02 0.0075 24.4 7.9 31 131-161 181-211 (310)
82 PF03806 ABG_transport: AbgT p 26.0 3.2E+02 0.0068 27.4 7.9 157 26-185 200-396 (502)
83 cd01177 IPT_NFkappaB IPT domai 25.8 22 0.00047 27.9 -0.1 12 83-94 61-72 (102)
84 COG2978 AbgT Putative p-aminob 25.7 2.8E+02 0.006 27.7 7.3 39 25-66 210-248 (516)
85 TIGR00901 2A0125 AmpG-related 25.5 4.8E+02 0.01 23.2 9.2 49 121-169 112-165 (356)
86 PRK10133 L-fucose transporter; 25.5 5.8E+02 0.013 24.1 9.6 32 129-160 296-327 (438)
87 KOG4770|consensus 25.3 4.2E+02 0.0092 24.5 8.0 83 76-159 54-137 (315)
88 PF09527 ATPase_gene1: Putativ 25.2 1.4E+02 0.0031 20.0 3.9 44 102-149 7-50 (55)
89 PF14851 FAM176: FAM176 family 25.1 47 0.001 27.9 1.8 28 31-59 26-53 (153)
90 COG5264 VTC1 Vacuolar transpor 25.0 1.9E+02 0.004 23.6 5.1 26 128-153 58-83 (126)
91 TIGR00805 oat sodium-independe 24.8 2.1E+02 0.0045 29.0 6.7 16 141-156 380-395 (633)
92 COG4420 Predicted membrane pro 24.4 2E+02 0.0043 25.1 5.5 45 174-218 66-110 (191)
93 PF10852 DUF2651: Protein of u 23.7 3.2E+02 0.007 20.6 6.2 65 132-222 6-70 (82)
94 PF03825 Nuc_H_symport: Nucleo 23.6 6.3E+02 0.014 23.9 9.6 25 135-159 345-369 (400)
95 COG0598 CorA Mg2+ and Co2+ tra 23.3 68 0.0015 29.6 2.7 43 184-226 245-287 (322)
96 TIGR00893 2A0114 d-galactonate 23.2 2.3E+02 0.005 24.8 6.0 32 124-155 251-282 (399)
97 PRK00293 dipZ thiol:disulfide 23.1 7.8E+02 0.017 24.8 10.6 27 196-222 324-350 (571)
98 TIGR01301 GPH_sucrose GPH fami 23.1 1.6E+02 0.0036 28.9 5.4 70 89-159 2-74 (477)
99 PRK15097 cytochrome d terminal 22.9 4.5E+02 0.0098 26.5 8.3 115 86-224 379-495 (522)
100 PF10268 Tmemb_161AB: Predicte 22.8 6.8E+02 0.015 25.0 9.6 46 135-180 226-285 (486)
101 PF06210 DUF1003: Protein of u 22.7 2.5E+02 0.0055 22.0 5.4 46 173-218 11-56 (108)
102 PRK09433 thiP thiamine transpo 22.4 7.4E+02 0.016 24.2 11.7 62 157-223 357-418 (525)
103 PF12669 P12: Virus attachment 22.3 89 0.0019 21.8 2.5 22 39-60 4-25 (58)
104 PF06813 Nodulin-like: Nodulin 22.2 2.7E+02 0.0058 25.0 6.2 19 123-141 126-144 (250)
105 COG1178 ThiP ABC-type Fe3+ tra 22.1 8E+02 0.017 24.5 14.9 67 157-225 367-433 (540)
106 TIGR01299 synapt_SV2 synaptic 21.7 1.8E+02 0.0039 30.3 5.6 27 135-161 209-235 (742)
107 PRK11551 putative 3-hydroxyphe 21.7 6.1E+02 0.013 23.0 10.1 26 133-158 260-285 (406)
108 PRK10712 PTS system fructose-s 21.2 1.5E+02 0.0033 30.0 4.8 45 139-184 317-365 (563)
109 TIGR02003 PTS-II-BC-unk1 PTS s 21.1 3.9E+02 0.0084 27.1 7.6 21 138-158 142-162 (548)
110 COG1455 CelB Phosphotransferas 21.0 2.4E+02 0.0053 27.6 6.0 49 139-187 141-199 (432)
111 TIGR00889 2A0110 nucleoside tr 20.8 4.1E+02 0.0089 24.9 7.5 39 124-162 340-382 (418)
112 COG1928 PMT1 Dolichyl-phosphat 20.4 9.8E+02 0.021 25.1 10.4 112 102-218 135-261 (699)
113 PF12420 DUF3671: Protein of u 20.3 1.7E+02 0.0037 22.8 4.0 42 169-210 49-98 (104)
114 PF12650 DUF3784: Domain of un 20.2 2.3E+02 0.0049 21.2 4.6 22 101-122 46-67 (97)
115 PRK10473 multidrug efflux syst 20.1 5.9E+02 0.013 23.0 8.3 30 131-160 242-271 (392)
116 PRK11652 emrD multidrug resist 20.0 4.8E+02 0.01 23.6 7.6 27 130-156 245-271 (394)
No 1
>KOG1278|consensus
Probab=100.00 E-value=1.5e-92 Score=673.58 Aligned_cols=249 Identities=62% Similarity=1.123 Sum_probs=245.5
Q ss_pred ceEEEeCCCCCcchhhhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCchhhhhcCCceEEe
Q psy3723 3 FVEWRKSDIPWASRWDIYLSMSDTHIHWFSIVNSILVIFFLSGILTLIMIRTLRRDIARYNAGDEGIDEVLEESGWKLVH 82 (253)
Q Consensus 3 ~V~w~~s~~~w~~Rwd~yl~~~~~~ihW~si~Ns~~lv~lL~~~v~~IL~r~l~~D~~~y~~~~~~~~~~~e~~GWKlv~ 82 (253)
+|+|+|||++|++|||.|+++++.+||||||+||+++|++|+++|++|++||||||++|||++|. |||.+||+|||++|
T Consensus 239 sV~f~esdi~WasRWD~yL~m~~~qIhWfSIiNSlvIVlfLSgiv~mI~lRtl~rDiarYne~d~-~~d~~Ee~GWKLVh 317 (628)
T KOG1278|consen 239 SVKFEESDIKWASRWDYYLHMEDVQIHWFSIINSLVIVLFLSGIVAMIMLRTLYRDIARYNELDL-DDDAQEESGWKLVH 317 (628)
T ss_pred EEEEEeccCcchhhHHHHhcCCCCceEEEehhhhHHHHHHHHHHHHHHHHHHHHHhHhhhccccc-hhhhhhhcceEEee
Confidence 79999999999999999999999999999999999999999999999999999999999999888 67889999999999
Q ss_pred ccccCCCCCcchhhhhhchhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhhhhhHHHHHHhhhcCcchhh
Q psy3723 83 GDVFRPPRHPRLFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSARLYTTFKGREWKK 162 (253)
Q Consensus 83 gDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~~s~isGyvS~~~yk~f~g~~W~~ 162 (253)
|||||||+++++||++||+|+|+++|+++++++||+|+++|++||+++|+++++|+++|++|||+|+|+||.++|++||+
T Consensus 318 GDVFR~P~~~~lLsv~vGsGvQ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rlyk~~~g~~wk~ 397 (628)
T KOG1278|consen 318 GDVFRPPRNSMLLSVLVGSGVQLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLYKTFKGREWKR 397 (628)
T ss_pred cccccCCCCCeEEEEEeccChhhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhcCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCCCCcccCCCCCCCC
Q psy3723 163 AAFETAMLYPTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLLLLLCVSLPLVFLGAYFGYRKQPIQLPVRTNQIPRQVP 242 (253)
Q Consensus 163 ~~~lt~~~~P~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~g~k~~~~~~P~~~n~ipR~IP 242 (253)
|+++|++++|++++++++++|++.|.++||+|+||+|+++++++|++||+||+++|+++|+|++++|+|+||||||||||
T Consensus 398 ~~~lta~l~PGivf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqIP 477 (628)
T KOG1278|consen 398 NAILTAFLFPGIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQIP 477 (628)
T ss_pred hHHhhhhhcchHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy3723 243 EQLWYMSPVV 252 (253)
Q Consensus 243 ~qp~y~~~~~ 252 (253)
+||||+++.+
T Consensus 478 ~q~~y~~~~~ 487 (628)
T KOG1278|consen 478 EQPWYLNPIP 487 (628)
T ss_pred CCccccchhh
Confidence 9999999764
No 2
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=4.6e-82 Score=615.91 Aligned_cols=249 Identities=57% Similarity=1.112 Sum_probs=243.3
Q ss_pred ceEEEeCCCCCcchhhhccc-CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCchhhhhcCCceEE
Q psy3723 3 FVEWRKSDIPWASRWDIYLS-MSDTHIHWFSIVNSILVIFFLSGILTLIMIRTLRRDIARYNAGDEGIDEVLEESGWKLV 81 (253)
Q Consensus 3 ~V~w~~s~~~w~~Rwd~yl~-~~~~~ihW~si~Ns~~lv~lL~~~v~~IL~r~l~~D~~~y~~~~~~~~~~~e~~GWKlv 81 (253)
||+|+|++++|++|||+|++ ..++++||+||+||+++|++|+++|++||+|+||||++|||++++ +||++||+|||++
T Consensus 172 SV~w~~s~~~w~~Rwd~Yl~~~~~~~ihw~SiiNS~iivl~L~~~v~~Il~R~l~~D~~~y~~~~~-~~~~~ee~GWKlv 250 (521)
T PF02990_consen 172 SVKWEESDVPWASRWDKYLDSMFDSQIHWFSIINSFIIVLFLSGLVAIILLRTLRRDISRYNDEDS-EEDDQEESGWKLV 250 (521)
T ss_pred EEEEEecCCchhhccccccccccCCceEEEeHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc-ccccccccchhhh
Confidence 79999999999999999998 778999999999999999999999999999999999999999887 5577899999999
Q ss_pred eccccCCCCCcchhhhhhchhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhhhhhHHHHHHhhhcCcchh
Q psy3723 82 HGDVFRPPRHPRLFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSARLYTTFKGREWK 161 (253)
Q Consensus 82 ~gDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~~s~isGyvS~~~yk~f~g~~W~ 161 (253)
||||||+|+|+++||+++|+|+|+++|++++++++++|+++|++||+++++++++|+++|++|||+|+|+||+++|++||
T Consensus 251 hgDVFR~P~~~~lls~lvG~G~Qll~~~~~~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~ 330 (521)
T PF02990_consen 251 HGDVFRPPKHPMLLSALVGTGIQLLFMALVTLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWK 330 (521)
T ss_pred hHHHhcCcCCchHHHhHhcchhhhhHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHhhhhhhhhhhhhhcccCCC-CCCcccCCCCCC
Q psy3723 162 KAAFETAMLYPTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLLLLLCVSLPLVFLGAYFGYRKQPI-QLPVRTNQIPRQ 240 (253)
Q Consensus 162 ~~~~lt~~~~P~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~g~k~~~~-~~P~~~n~ipR~ 240 (253)
+++++|++++|++++++++++|+++|.++||+|+||+|++.++++|++|++||+++||++|+|+++. |+|||+|+||||
T Consensus 331 ~~~~lt~~~~P~~~~~~~~~~n~i~~~~~ss~aipf~t~~~l~~lw~~v~~PL~~lG~~~g~k~~~~~~~p~~~n~ipR~ 410 (521)
T PF02990_consen 331 KNSILTSLLFPGILFSIFFILNFIAWSYGSSSAIPFGTILFLIALWFFVSIPLTFLGGYFGFKNPPIDEFPCRTNQIPRQ 410 (521)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhhhhhhcchhhhcCccccccCCcCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999888 999999999999
Q ss_pred CCCCCCCCCCCC
Q psy3723 241 VPEQLWYMSPVV 252 (253)
Q Consensus 241 IP~qp~y~~~~~ 252 (253)
||+||||+++.+
T Consensus 411 IP~~~~y~~~~~ 422 (521)
T PF02990_consen 411 IPPQPWYLSPFF 422 (521)
T ss_pred CCCCccccCCcc
Confidence 999999999875
No 3
>KOG1277|consensus
Probab=100.00 E-value=6e-79 Score=569.34 Aligned_cols=249 Identities=43% Similarity=0.810 Sum_probs=239.0
Q ss_pred ceEEEeCCCCCcchhhhccc--CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCC----chhhhhcC
Q psy3723 3 FVEWRKSDIPWASRWDIYLS--MSDTHIHWFSIVNSILVIFFLSGILTLIMIRTLRRDIARYNAGDEG----IDEVLEES 76 (253)
Q Consensus 3 ~V~w~~s~~~w~~Rwd~yl~--~~~~~ihW~si~Ns~~lv~lL~~~v~~IL~r~l~~D~~~y~~~~~~----~~~~~e~~ 76 (253)
+|+|+|+++++++|+|+|++ ..+|+||||||+||+++|+||+++|++||+|+||||++||++++++ |+|++||.
T Consensus 197 sV~W~~t~v~f~~rfdkyld~~ff~h~IHWfSIfNSfmmVifLvGlvamILMRtLrnDyarY~~dee~~d~~d~d~~~E~ 276 (593)
T KOG1277|consen 197 SVKWKETEVEFEKRFDKYLDPSFFPHRIHWFSIFNSFMMVIFLVGLVAMILMRTLRNDYARYAKDEEALDDMDRDDQEEY 276 (593)
T ss_pred EEEeeeccCcHHHHhHhhcccccccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhccccccccccc
Confidence 79999999999999999994 3488999999999999999999999999999999999999887652 55889999
Q ss_pred CceEEeccccCCCCCcchhhhhhchhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhhhhhHHHHHHhhhc
Q psy3723 77 GWKLVHGDVFRPPRHPRLFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSARLYTTFK 156 (253)
Q Consensus 77 GWKlv~gDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~~s~isGyvS~~~yk~f~ 156 (253)
|||++||||||+|+|+.|||+++|+|+|++...++++++|.+|.+++. ||+++++++++|++||.++||+||.+|.+.+
T Consensus 277 GWK~vHgDVFR~p~~~~Lfsa~lGsG~Qlf~l~~~ii~~Alvg~fy~~-rGal~saaI~vYAlTs~i~GY~~gs~Y~r~g 355 (593)
T KOG1277|consen 277 GWKQVHGDVFRFPSHPLLFSAVLGSGAQLFTLVLIIIMLALVGVFYTE-RGALLSAAIVVYALTSPINGYVSGSFYARLG 355 (593)
T ss_pred cceeeecccccCCCccHHHHHHhccccchHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHhcccccccccceeeehhc
Confidence 999999999999999999999999999999999999999999999987 9999999999999999999999999999999
Q ss_pred CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHhhhhhhhhhhhhhcc-cCCCCCCcccC
Q psy3723 157 GREWKKAAFETAMLYPTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLLLLLCVSLPLVFLGAYFGYR-KQPIQLPVRTN 235 (253)
Q Consensus 157 g~~W~~~~~lt~~~~P~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~g~k-~~~~~~P~~~n 235 (253)
|++|.||+++|++++|++++.+++++|++++++++++|+||+|++.++++|++|..||+++|++.|++ +.++++||||+
T Consensus 356 G~~Wik~m~lta~Lfp~~~~~t~~~~N~vai~y~at~AlPfgt~v~v~~iw~fv~~PL~~~G~i~GkN~~~~~~~PCR~~ 435 (593)
T KOG1277|consen 356 GRRWIKNMLLTASLFPVPVFGTAFLLNTVAIAYGATAALPFGTIVVVLLIWLFVISPLTVLGGIAGKNRSGEFDAPCRTK 435 (593)
T ss_pred cHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccccCccchHHHHHHHHHHhchHHHcccccccccccCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999966 47789999999
Q ss_pred CCCCCCCCCCCCCCCCC
Q psy3723 236 QIPRQVPEQLWYMSPVV 252 (253)
Q Consensus 236 ~ipR~IP~qp~y~~~~~ 252 (253)
++||+||++|||.+|.+
T Consensus 436 ~~pR~Ip~~kWy~~~~~ 452 (593)
T KOG1277|consen 436 AIPREIPPKKWYRSPLV 452 (593)
T ss_pred cCCCCCCCccccccchH
Confidence 99999999999999865
No 4
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=95.54 E-value=0.39 Score=38.14 Aligned_cols=77 Identities=21% Similarity=0.365 Sum_probs=57.9
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhhhhhHHHHHHhhhcCcchhhhhhhhhhhhhH
Q psy3723 94 LFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSARLYTTFKGREWKKAAFETAMLYPT 173 (253)
Q Consensus 94 lls~lvG~G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~~s~isGyvS~~~yk~f~g~~W~~~~~lt~~~~P~ 173 (253)
.-+.+-|.-.-+.++.+..++++.+-...+-+.+.+.-.....++++.+++|++++| .-+.|.|.+ -..++.++-.
T Consensus 4 ~~~vl~g~~~~~~~tl~~~l~~a~ll~~~~~~e~~~~~~~~~i~~ls~~~GG~~a~~---~~~~kG~l~-G~~~Gl~y~~ 79 (116)
T PF12670_consen 4 LSAVLKGLLVAYIITLILLLLLALLLYFTSLSESILPWLVVIIYILSVFIGGFYAGR---KAGSKGWLH-GLLVGLLYFL 79 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHccchHHH-HHHHHHHHHH
Confidence 345667777888888888888888777776777777778889999999999999994 566788874 4444544433
Q ss_pred H
Q psy3723 174 I 174 (253)
Q Consensus 174 ~ 174 (253)
+
T Consensus 80 i 80 (116)
T PF12670_consen 80 I 80 (116)
T ss_pred H
Confidence 3
No 5
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=92.91 E-value=6.5 Score=35.04 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=21.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHh
Q psy3723 165 FETAMLYPTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLLLLLCV 210 (253)
Q Consensus 165 ~lt~~~~P~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~~v 210 (253)
.+...++|+..+++...- . .++..+...++.+..+|+-+
T Consensus 198 ~ln~~ll~~~~~~l~i~s----~---~t~~~q~la~lvl~~I~iyi 236 (248)
T PF11368_consen 198 KLNQYLLPILYILLFIYS----L---LTGENQLLAILVLIIIWIYI 236 (248)
T ss_pred HHHHHHHHHHHHHHHHHH----H---HcCCccHHHHHHHHHHHHHH
Confidence 344456677655544331 1 23444556667777777644
No 6
>PF13347 MFS_2: MFS/sugar transport protein
Probab=84.19 E-value=22 Score=33.37 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=46.0
Q ss_pred hhhcCCceEEeccccCCCCCcchhhhhhc--hhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhhhhhHHH
Q psy3723 72 VLEESGWKLVHGDVFRPPRHPRLFVSIIG--SGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSA 149 (253)
Q Consensus 72 ~~e~~GWKlv~gDVFR~P~~~~lls~lvG--~G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~~s~isGyvS~ 149 (253)
.+++.++|..-.++||-|+...++.+..- .|..+..+... ..+-.... .+...+.....+.+.+.++....+
T Consensus 208 ~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~---y~~~~vl~---~~~~~~~~~~~~~~~~~v~~~~~~ 281 (428)
T PF13347_consen 208 QEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLP---YYFTYVLG---NEGLISIFMLIFFVASIVGSPLWG 281 (428)
T ss_pred cccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHH---HHHHHHhc---CchhhHHHHHHHHHHHHHHHHHHH
Confidence 34455666666778888876655444332 22222222211 11111111 124555666677778888888889
Q ss_pred HHHhhhcCcc
Q psy3723 150 RLYTTFKGRE 159 (253)
Q Consensus 150 ~~yk~f~g~~ 159 (253)
++-|+++.++
T Consensus 282 ~l~~r~gk~~ 291 (428)
T PF13347_consen 282 RLSKRFGKKK 291 (428)
T ss_pred HHHHHcccee
Confidence 9989897665
No 7
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=81.12 E-value=40 Score=33.59 Aligned_cols=88 Identities=11% Similarity=0.215 Sum_probs=45.8
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhhcCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcCC-------------CCcChH
Q psy3723 132 FAITCYVLFGVLAGYVSARLYTTFKGREWKKAAFETAMLYPTIVFSTCFLLNFFIWGKRSS-------------GAVPFS 198 (253)
Q Consensus 132 ~~i~~y~~~s~isGyvS~~~yk~f~g~~W~~~~~lt~~~~P~~~~~i~~~~N~i~~~~~Ss-------------~aipf~ 198 (253)
...+.|.+.|.+=|+.++++ | +.++..+.+--..--....+++.++...++++++.|. .+..+.
T Consensus 302 iI~l~F~i~GivYG~~sG~i-k--s~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~~~ 378 (502)
T PF03806_consen 302 IIFLFFLIPGIVYGIASGTI-K--SDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLGLP 378 (502)
T ss_pred HHHHHHHHHHHHHhhhhcee-c--CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcCCC
Confidence 34455666777777777654 1 1233333333333334445556666667777766665 223334
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhh
Q psy3723 199 TMLSLLLLLLCVSLPLVFLGAYFG 222 (253)
Q Consensus 199 ti~~l~~lw~~v~~PL~~iG~~~g 222 (253)
.+..++.+-++.++=--++||--+
T Consensus 379 ~~~l~i~fill~a~iNLfi~S~Sa 402 (502)
T PF03806_consen 379 GIPLIIGFILLTAFINLFIGSASA 402 (502)
T ss_pred cHHHHHHHHHHHHHHHHhhhcchh
Confidence 444455555555555555666444
No 8
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=80.10 E-value=12 Score=37.23 Aligned_cols=88 Identities=11% Similarity=0.153 Sum_probs=42.3
Q ss_pred chhHHHHHHHHHHHHHHH--HhccCCCCCc-----hHHH----HHHHHHHHhhhhhhhHHHHHHhhhcCcchhhhhhhhh
Q psy3723 100 GSGVQIFLMTLVTLFVAM--LGMLSPSSRG-----ALTS----FAITCYVLFGVLAGYVSARLYTTFKGREWKKAAFETA 168 (253)
Q Consensus 100 G~G~Qll~~~~~~l~~~~--~g~~~~~~~g-----~l~t----~~i~~y~~~s~isGyvS~~~yk~f~g~~W~~~~~lt~ 168 (253)
-.|+-+++.....+++.. -|.++..+.| -+++ ...++|.+.|.+.|++++++. +.++..+.+.=..
T Consensus 264 ~Ag~~~l~~~~~i~~l~lP~~g~Lr~~~tG~l~~Sp~~~siv~~i~~~Fli~GivyG~~~g~ik---s~~Dv~~~m~~g~ 340 (508)
T PRK11339 264 IAGVVSLLFIAAIALMVIPENGILRDPINHTVMPSPFIKGIVPLIILFFFVVSLAYGIATRTIR---RQADLPHLMIEPM 340 (508)
T ss_pred HHHHHHHHHHHHHHHHHccCCcccccCCCCCccCChHHHhHHHHHHHHHHHHHHHHhhhccccc---CHHHHHHHHHHHH
Confidence 355655554444443321 4445432224 4566 566677778888887777442 2233332222222
Q ss_pred hhhhHHHHHHHHHHHHHHHHhc
Q psy3723 169 MLYPTIVFSTCFLLNFFIWGKR 190 (253)
Q Consensus 169 ~~~P~~~~~i~~~~N~i~~~~~ 190 (253)
.-.-..+++++...+++.+++.
T Consensus 341 ~~m~~~ivl~F~~Aqfia~F~~ 362 (508)
T PRK11339 341 KEMAGFIVMVFPLAQFVAMFNW 362 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233344455555555333
No 9
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=78.54 E-value=2.6 Score=29.50 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=31.6
Q ss_pred cCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcC
Q psy3723 156 KGREWKKAAFETAMLYPTIVFSTCFLLNFFIWGKRS 191 (253)
Q Consensus 156 ~g~~W~~~~~lt~~~~P~~~~~i~~~~N~i~~~~~S 191 (253)
++++|+...+++..++|.+....+..--+++|.++-
T Consensus 14 k~~E~~~flfl~~~l~PiL~v~~Vg~YGF~VWm~Q~ 49 (56)
T PF06796_consen 14 KRSELKAFLFLAVVLFPILAVAFVGGYGFIVWMYQI 49 (56)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999998764
No 10
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=77.70 E-value=45 Score=29.43 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=14.3
Q ss_pred HHHHHHHhhhhhhhHHHHHHhhh
Q psy3723 133 AITCYVLFGVLAGYVSARLYTTF 155 (253)
Q Consensus 133 ~i~~y~~~s~isGyvS~~~yk~f 155 (253)
....+.+.+.++..+++++-++.
T Consensus 257 ~~~~~~~~~~~~~~~~g~l~~r~ 279 (379)
T TIGR00881 257 AFTLYELGGLVGTLLAGWLSDKL 279 (379)
T ss_pred HHHHHHHHcchhHHHHHHHHHHH
Confidence 34455566677777777766644
No 11
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=77.35 E-value=3 Score=28.15 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=31.5
Q ss_pred cCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcC
Q psy3723 156 KGREWKKAAFETAMLYPTIVFSTCFLLNFFIWGKRS 191 (253)
Q Consensus 156 ~g~~W~~~~~lt~~~~P~~~~~i~~~~N~i~~~~~S 191 (253)
+.++|+...+++..++|.+.......--++.|.++-
T Consensus 6 k~~El~~flfl~v~l~PiLsV~~Vg~YGF~vWm~Q~ 41 (47)
T TIGR02972 6 RSNELKALGFIIVVLFPILSVAGIGGYGFIIWMIQA 41 (47)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999998764
No 12
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=76.98 E-value=3.8 Score=27.06 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=31.3
Q ss_pred CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcC
Q psy3723 157 GREWKKAAFETAMLYPTIVFSTCFLLNFFIWGKRS 191 (253)
Q Consensus 157 g~~W~~~~~lt~~~~P~~~~~i~~~~N~i~~~~~S 191 (253)
+++|+...+++..++|.+.......--++.|.++-
T Consensus 2 ~~El~~flfl~~~l~PiLsV~~V~~YGF~vWm~Q~ 36 (42)
T TIGR02973 2 RMELNTFLFLAAVIWPVLSVITVGGYGFAVWMYQI 36 (42)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999998764
No 13
>TIGR00893 2A0114 d-galactonate transporter.
Probab=75.87 E-value=26 Score=30.93 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=15.2
Q ss_pred HHHHHHhhhhhhhHHHHHHhhhcCcc
Q psy3723 134 ITCYVLFGVLAGYVSARLYTTFKGRE 159 (253)
Q Consensus 134 i~~y~~~s~isGyvS~~~yk~f~g~~ 159 (253)
...+.+.+.++...++++.++++.++
T Consensus 257 ~~~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 257 ASLPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444555666666666666665554
No 14
>TIGR00895 2A0115 benzoate transport.
Probab=74.73 E-value=16 Score=32.63 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHhhhcCc
Q psy3723 131 SFAITCYVLFGVLAGYVSARLYTTFKGR 158 (253)
Q Consensus 131 t~~i~~y~~~s~isGyvS~~~yk~f~g~ 158 (253)
......+.+++.++..+++++-++++.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (398)
T TIGR00895 288 ATGGALFNFGGVIGSIIFGWLADRLGPR 315 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 3444555566677777777776666543
No 15
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=73.93 E-value=95 Score=30.56 Aligned_cols=159 Identities=19% Similarity=0.268 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhh--------cCCCCCc-hhhh--h-cCCceEEeccccCCCCCcchhhhhhchh
Q psy3723 35 NSILVIFFLSGILTLIMIRTLRRDIARY--------NAGDEGI-DEVL--E-ESGWKLVHGDVFRPPRHPRLFVSIIGSG 102 (253)
Q Consensus 35 Ns~~lv~lL~~~v~~IL~r~l~~D~~~y--------~~~~~~~-~~~~--e-~~GWKlv~gDVFR~P~~~~lls~lvG~G 102 (253)
..++.--.++.++++++++.+|++=+.+ ..+..|+ ++++ | .+.|+....-|+|-| .+....++
T Consensus 186 ~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk---~iW~la~a-- 260 (448)
T COG2271 186 AAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNK---LIWLLALA-- 260 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcCh---HHHHHHHH--
Confidence 3444445566677888888888643333 2222111 1111 2 445887777788765 44332221
Q ss_pred HHHHHHHHHHHHHHH--Hhc-------cCCCCCchHHH--HHHHHHHH----hhhhhhhHHHHHHhhhcCcchhhhhhhh
Q psy3723 103 VQIFLMTLVTLFVAM--LGM-------LSPSSRGALTS--FAITCYVL----FGVLAGYVSARLYTTFKGREWKKAAFET 167 (253)
Q Consensus 103 ~Qll~~~~~~l~~~~--~g~-------~~~~~~g~l~t--~~i~~y~~----~s~isGyvS~~~yk~f~g~~W~~~~~lt 167 (253)
-+++.. .|. ++..++-+..+ .++.+|=. +++++||.|= |.|+|++...+.+.
T Consensus 261 ---------~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSD---klfkgrR~p~~~i~- 327 (448)
T COG2271 261 ---------NVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSD---KLFKGRRGPMALIF- 327 (448)
T ss_pred ---------HHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH---HhcccccchHHHHH-
Confidence 112211 111 11122222332 34455533 4455565555 55888887654332
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHhhhhhhhhhhhh
Q psy3723 168 AMLYPTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLLLLLCVSLPLVFLGAYF 221 (253)
Q Consensus 168 ~~~~P~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~ 221 (253)
.+...+-++... .+++.-+.-....++.+=++|.-|=.++|-..
T Consensus 328 ---------~~~i~~~~~~~w-~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a 371 (448)
T COG2271 328 ---------MLLITASLVLYW-LAPNGSYLLDAILLFIIGFLIYGPQMLIGLAA 371 (448)
T ss_pred ---------HHHHHHHHHHHH-cCCCccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 111111112111 12222345555666667777888987777544
No 16
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=73.77 E-value=33 Score=29.63 Aligned_cols=45 Identities=18% Similarity=0.441 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhhhhhHHHHHHhhhc
Q psy3723 109 TLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSARLYTTFK 156 (253)
Q Consensus 109 ~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~~s~isGyvS~~~yk~f~ 156 (253)
.+.+++.+.++++++.++... .+..-++.++++|.+-..+++.+.
T Consensus 91 ~if~~~~gi~~~f~~~~~~~~---gi~tli~~~i~~G~~~~~~~~~i~ 135 (206)
T PF06570_consen 91 GIFSLLFGIMGFFSPKNSNQY---GIITLILVSIVGGLVFYFIFKYIY 135 (206)
T ss_pred HHHHHHHHHHHHHhhcccccc---cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777776433322 333444456667776666666533
No 17
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=68.18 E-value=58 Score=25.74 Aligned_cols=24 Identities=8% Similarity=0.451 Sum_probs=14.7
Q ss_pred hcCcchhhhhhhhhhhhhHHHHHHH
Q psy3723 155 FKGREWKKAAFETAMLYPTIVFSTC 179 (253)
Q Consensus 155 f~g~~W~~~~~lt~~~~P~~~~~i~ 179 (253)
++.++|++.. ..+..+++.+..++
T Consensus 109 ~g~r~~~~~~-~~s~~~~~~i~~~F 132 (141)
T PF07331_consen 109 LGERRWLRLL-LISVVFAAVIYFVF 132 (141)
T ss_pred hCCCcHHHHH-HHHHHHHHHHHHHH
Confidence 4477888644 44566666665544
No 18
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=63.84 E-value=1.6e+02 Score=29.25 Aligned_cols=132 Identities=14% Similarity=0.270 Sum_probs=68.7
Q ss_pred cchhhhhhchhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHH---hhhhhhhHHHHHHhh-------------h
Q psy3723 92 PRLFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVL---FGVLAGYVSARLYTT-------------F 155 (253)
Q Consensus 92 ~~lls~lvG~G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~---~s~isGyvS~~~yk~-------------f 155 (253)
..++++.+-.|+=+...++.=++.-.-+....-.-++++....+.+.+ .++++||.+-|.-+. .
T Consensus 332 ~~~lt~~~~P~~~~~~~~~~n~i~~~~~ss~aipf~t~~~l~~lw~~v~~PL~~lG~~~g~k~~~~~~~p~~~n~ipR~I 411 (521)
T PF02990_consen 332 NSILTSLLFPGILFSIFFILNFIAWSYGSSSAIPFGTILFLIALWFFVSIPLTFLGGYFGFKNPPIDEFPCRTNQIPRQI 411 (521)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhhhhhhcchhhhcCccccccCCcCCCCCCCcC
Confidence 366777777775444433333332222222211233333332222222 556677766432211 0
Q ss_pred cCcchhh---hhhhhhhhhhHHHHH--HHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHhhhhhhhhhhhhhcccC
Q psy3723 156 KGREWKK---AAFETAMLYPTIVFS--TCFLLNFFIWGKRSSGAVPFSTMLSLLLLLLCVSLPLVFLGAYFGYRKQ 226 (253)
Q Consensus 156 ~g~~W~~---~~~lt~~~~P~~~~~--i~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~g~k~~ 226 (253)
-.+.|-. ..++.+.++|..... ..++.+. .|.++ --..|+-++..+.+.+.++.-.+++..|+-...+
T Consensus 412 P~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s-~W~~~--~y~~fgfl~~~~~ll~i~~a~vsI~~tY~~L~~E 484 (521)
T PF02990_consen 412 PPQPWYLSPFFSILIGGILPFGAIFIELYFIFSS-LWSNK--FYYLFGFLLLVFILLIITCAEVSIILTYFQLCAE 484 (521)
T ss_pred CCCccccCCccceeecchHHHHHHHHHHHHHHHH-hhcCc--ceEEehHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0134532 334556666766433 3444444 46666 4445777777788888888888999988865444
No 19
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=63.83 E-value=19 Score=31.62 Aligned_cols=26 Identities=19% Similarity=0.507 Sum_probs=16.4
Q ss_pred HHHHHHhhhhhhhHHHHHHhhhcCcc
Q psy3723 134 ITCYVLFGVLAGYVSARLYTTFKGRE 159 (253)
Q Consensus 134 i~~y~~~s~isGyvS~~~yk~f~g~~ 159 (253)
.....+.+.+++.+.+++-++++.++
T Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~~ 274 (352)
T PF07690_consen 249 FSIFGIVGIIGSLLAGRLSDRFGRRR 274 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 45555566666777777776665543
No 20
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=63.73 E-value=1e+02 Score=29.13 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=13.2
Q ss_pred HHHHHHHhhhhhhhHHHHHHhhh
Q psy3723 133 AITCYVLFGVLAGYVSARLYTTF 155 (253)
Q Consensus 133 ~i~~y~~~s~isGyvS~~~yk~f 155 (253)
....+.+.+.++.++++++..++
T Consensus 294 ~~~~~~~~~~~g~~~~G~l~dr~ 316 (452)
T PRK11273 294 AYFLYEYAGIPGTLLCGWMSDKV 316 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666666666666554
No 21
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=62.06 E-value=2.6 Score=39.10 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHhhhcCcchhhhhhhhhhhhhHHHHHHHHH
Q psy3723 149 ARLYTTFKGREWKKAAFETAMLYPTIVFSTCFL 181 (253)
Q Consensus 149 ~~~yk~f~g~~W~~~~~lt~~~~P~~~~~i~~~ 181 (253)
..+.++.+.+-|...+++-++++-.+++++...
T Consensus 126 m~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~ 158 (381)
T PF05297_consen 126 MWLLRELGASFWTILAFCLAFLLAIVLLIIAVL 158 (381)
T ss_dssp ---------------------------------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456777788866666555554444444333
No 22
>KOG1278|consensus
Probab=61.51 E-value=1.7e+02 Score=29.78 Aligned_cols=130 Identities=14% Similarity=0.270 Sum_probs=71.4
Q ss_pred hcCCceEEeccccCCCCCcchhhhhhchhHHHHHHHHHHHHHHHHhccCCCCCchH----HHHHHHHHHH----hhhhhh
Q psy3723 74 EESGWKLVHGDVFRPPRHPRLFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGAL----TSFAITCYVL----FGVLAG 145 (253)
Q Consensus 74 e~~GWKlv~gDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~~~~g~~~~~~~g~l----~t~~i~~y~~----~s~isG 145 (253)
+..+||. ..++++++=-|+-+....+ +-++-+.. +++|++ +-+.+++|.+ .++++|
T Consensus 391 ~g~~wk~-----------~~~lta~l~PGivf~~~f~----lN~~lW~~-~SSgAvPF~T~~~ll~LwF~isVPLsf~G~ 454 (628)
T KOG1278|consen 391 KGREWKR-----------NAILTAFLFPGIVFAIFFV----LNFFLWGK-HSSGAVPFSTMVALLFLWFGISVPLSFVGG 454 (628)
T ss_pred cCCcchh-----------hHHhhhhhcchHHHHHHHH----HHHHhhcC-CCCCcccHHHHHHHHHHHHHhhhhHHHhhH
Confidence 4567885 4677888888886654332 22222322 344432 2233344433 456677
Q ss_pred hHHHHHHh------------hhcCcchhh---hhhhhhhhhhHHHHH--HHHHHHHHHHHhcCCCCcChHHHHHHHHHHH
Q psy3723 146 YVSARLYT------------TFKGREWKK---AAFETAMLYPTIVFS--TCFLLNFFIWGKRSSGAVPFSTMLSLLLLLL 208 (253)
Q Consensus 146 yvS~~~yk------------~f~g~~W~~---~~~lt~~~~P~~~~~--i~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~ 208 (253)
|++-|.-. +.-.++|.. ..++-+..+|.-+.. .++++|.+ |.++ --.=||=++.++.+.+
T Consensus 455 y~g~kk~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili~GilPFg~ifIELfFI~~Si-W~~q--fYY~FGFLFlvfiiLv 531 (628)
T KOG1278|consen 455 YFGFKKPAIEHPVRTNQIPRQIPEQPWYLNPIPSILIAGILPFGAIFIELFFILSSI-WLNQ--FYYMFGFLFLVFIILV 531 (628)
T ss_pred HhhccCCCCCCCcccCCCcccCCCCccccchhhHHHhhcccchHHHHHHHHHHHHHH-Hhhh--HHHHHHHHHHHHHHHH
Confidence 77765421 111245643 456667778876544 56777776 6551 1122444445555555
Q ss_pred Hhhhhhhhhhhhhh
Q psy3723 209 CVSLPLVFLGAYFG 222 (253)
Q Consensus 209 ~v~~PL~~iG~~~g 222 (253)
..|.=.+++++|+-
T Consensus 532 vtcaeisIvl~Yf~ 545 (628)
T KOG1278|consen 532 VTCAEISIVLTYFQ 545 (628)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666677787774
No 23
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=60.33 E-value=53 Score=30.98 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=9.4
Q ss_pred HHHHHhhhhhhhHHHHHH
Q psy3723 135 TCYVLFGVLAGYVSARLY 152 (253)
Q Consensus 135 ~~y~~~s~isGyvS~~~y 152 (253)
+.-++++.++|+.+-++.
T Consensus 308 ~~~~i~~~~~g~l~d~~~ 325 (465)
T TIGR00894 308 LFAWLCSIFAGYLADFLK 325 (465)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333445556666665543
No 24
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=60.22 E-value=28 Score=33.43 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=13.9
Q ss_pred HHHHHhhhhhhhHHHHHHhhhc
Q psy3723 135 TCYVLFGVLAGYVSARLYTTFK 156 (253)
Q Consensus 135 ~~y~~~s~isGyvS~~~yk~f~ 156 (253)
++=+++.+++|+.+-|+-++.+
T Consensus 299 ~~~~ig~~~~G~lsDr~~~r~~ 320 (476)
T PLN00028 299 LMNLFARPAGGYLSDVAARRFG 320 (476)
T ss_pred HHHHHHHhhhHHHHHHHHHhcC
Confidence 3344566777888777765543
No 25
>PRK12307 putative sialic acid transporter; Provisional
Probab=60.13 E-value=81 Score=29.03 Aligned_cols=27 Identities=15% Similarity=-0.058 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhhcCc
Q psy3723 132 FAITCYVLFGVLAGYVSARLYTTFKGR 158 (253)
Q Consensus 132 ~~i~~y~~~s~isGyvS~~~yk~f~g~ 158 (253)
.....+.+.+.++.+..+++.+.++.+
T Consensus 270 ~~~~~~~~~~~~g~~~~g~l~dr~~~~ 296 (426)
T PRK12307 270 NLMTAAAFGTVLGNIVWGLCADRIGLK 296 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 344455566777777777777666544
No 26
>PF12271 Chs3p: Chitin synthase III catalytic subunit; InterPro: IPR022057 This family of proteins is found in eukaryotes. Proteins in this family are typically between 288 and 332 amino acids in length. This family is the catalytic domain of chitin synthase III. Chitin is a major component of fungal cell walls and this enzyme is responsible for its formation.
Probab=58.78 E-value=1.6e+02 Score=27.47 Aligned_cols=120 Identities=16% Similarity=0.204 Sum_probs=71.9
Q ss_pred hhHHHHHHHHH---HHHHHHHhccCCCCCchHHHHHHHHH--HHhhhhhhhHHHHHHhhhcC---cchhhhhhhhhhhhh
Q psy3723 101 SGVQIFLMTLV---TLFVAMLGMLSPSSRGALTSFAITCY--VLFGVLAGYVSARLYTTFKG---REWKKAAFETAMLYP 172 (253)
Q Consensus 101 ~G~Qll~~~~~---~l~~~~~g~~~~~~~g~l~t~~i~~y--~~~s~isGyvS~~~yk~f~g---~~W~~~~~lt~~~~P 172 (253)
+.+|.-+.... .++-+.+|+.- .+.|+..+..++-- .+.-..++|+|--..|.+.| ++-.--......++|
T Consensus 118 tAi~~g~~~a~~w~Ll~Ng~vgfQl-~eDGT~~Sl~ll~~ss~~~f~~t~~isl~Tf~~w~~~~~~~~~~~Lfvl~~l~p 196 (293)
T PF12271_consen 118 TAIQIGLISATCWCLLINGFVGFQL-WEDGTPLSLWLLRGSSLILFIGTFYISLDTFKSWTGYLSPTNTIALFVLYYLLP 196 (293)
T ss_pred HHHHHHHHHHHHHHHHHhhhheeee-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchhHHHHHHHH
Confidence 34565543332 23335677776 46777776544332 22445578888877776655 221122344456889
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHhhhhhhhhhhhh
Q psy3723 173 TIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLLLLLCVSLPLVFLGAYF 221 (253)
Q Consensus 173 ~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~ 221 (253)
++.+.++.++-.+.-..-=-.--|.+.++.-.+++..-++=.-.++..+
T Consensus 197 ~i~l~~Y~v~q~~lv~~vL~e~wp~g~i~~~~~fFv~gQv~~y~~S~~I 245 (293)
T PF12271_consen 197 AIFLVIYVVLQLILVLRVLGERWPLGYILLGVFFFVAGQVFLYVFSTHI 245 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999988887665555556678888777766666555444443333
No 27
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=57.57 E-value=74 Score=27.17 Aligned_cols=27 Identities=22% Similarity=0.592 Sum_probs=17.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhcc--cCCCC
Q psy3723 203 LLLLLLCVSLPLVFLGAYFGYR--KQPIQ 229 (253)
Q Consensus 203 l~~lw~~v~~PL~~iG~~~g~k--~~~~~ 229 (253)
.+.+...+..-.+++|+++|.| ++++|
T Consensus 157 ~~~~~~~~~~v~a~lG~~lG~kllkKHF~ 185 (186)
T PF09605_consen 157 MLIIIIIITFVGALLGALLGKKLLKKHFE 185 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444666778999999976 45554
No 28
>TIGR00901 2A0125 AmpG-related permease.
Probab=56.41 E-value=1.5e+02 Score=26.53 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=13.2
Q ss_pred HhhhhhhhHHHHHHhhhcCcch
Q psy3723 139 LFGVLAGYVSARLYTTFKGREW 160 (253)
Q Consensus 139 ~~s~isGyvS~~~yk~f~g~~W 160 (253)
+.+.++...++++.++++.++.
T Consensus 256 ~~~~~g~~~~g~l~~r~g~~~~ 277 (356)
T TIGR00901 256 LGAILGGLIGGIIMQPLNILYA 277 (356)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH
Confidence 3445566666677666655554
No 29
>PRK09528 lacY galactoside permease; Reviewed
Probab=55.81 E-value=1.3e+02 Score=27.90 Aligned_cols=33 Identities=6% Similarity=0.109 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHhhhcCcchh
Q psy3723 129 LTSFAITCYVLFGVLAGYVSARLYTTFKGREWK 161 (253)
Q Consensus 129 l~t~~i~~y~~~s~isGyvS~~~yk~f~g~~W~ 161 (253)
.......++.+...++.+.++++-++++.++..
T Consensus 263 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 295 (420)
T PRK09528 263 VFGYLNSFQVFLEALIMFFAPFIINRIGAKNAL 295 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh
Confidence 344455555556667777777787777776643
No 30
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=54.13 E-value=56 Score=29.43 Aligned_cols=29 Identities=7% Similarity=0.186 Sum_probs=20.1
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhhcCcch
Q psy3723 132 FAITCYVLFGVLAGYVSARLYTTFKGREW 160 (253)
Q Consensus 132 ~~i~~y~~~s~isGyvS~~~yk~f~g~~W 160 (253)
.....+.+.+.++++.++++.++++.++.
T Consensus 234 ~~~~~~~~~~~~~~~~~g~l~~r~g~~~~ 262 (377)
T PRK11102 234 YYFALNIVFLFVMTIINSRFVRRVGALNM 262 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 34455666777788888888887776554
No 31
>KOG1289|consensus
Probab=53.95 E-value=1.9e+02 Score=29.30 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=28.2
Q ss_pred cchhhHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhcCCCCCchhhhhcCCce
Q psy3723 27 HIHWFSIVNSILVI-FFLSGILTLIMIRTLRRDIARYNAGDEGIDEVLEESGWK 79 (253)
Q Consensus 27 ~ihW~si~Ns~~lv-~lL~~~v~~IL~r~l~~D~~~y~~~~~~~~~~~e~~GWK 79 (253)
.-+|++-+|++-+. .++..++.+|.+-+-+++=..+|+.+-.-.+.++++|||
T Consensus 195 p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~ 248 (550)
T KOG1289|consen 195 PTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWK 248 (550)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCC
Confidence 44788889988664 444455556665555443111333211112345567777
No 32
>PRK11663 regulatory protein UhpC; Provisional
Probab=50.34 E-value=2.1e+02 Score=26.81 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=13.7
Q ss_pred HHHHHHHhhhhhhhHHHHHHhhh
Q psy3723 133 AITCYVLFGVLAGYVSARLYTTF 155 (253)
Q Consensus 133 ~i~~y~~~s~isGyvS~~~yk~f 155 (253)
...++.+++.++++.++++-.++
T Consensus 284 ~~~~~~~~~~~g~~~~g~l~dr~ 306 (434)
T PRK11663 284 AVSMFELGGFIGALVAGWGSDKL 306 (434)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHh
Confidence 34445556666666666666555
No 33
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=47.48 E-value=2.1e+02 Score=28.69 Aligned_cols=52 Identities=17% Similarity=0.363 Sum_probs=31.4
Q ss_pred hhchhHHHHHHHHHHHHHHHH---hccCCCCC---------chHHHHHHHHHHHhhhhhhhHHHH
Q psy3723 98 IIGSGVQIFLMTLVTLFVAML---GMLSPSSR---------GALTSFAITCYVLFGVLAGYVSAR 150 (253)
Q Consensus 98 lvG~G~Qll~~~~~~l~~~~~---g~~~~~~~---------g~l~t~~i~~y~~~s~isGyvS~~ 150 (253)
+--.|+-++..+.+.+ +.++ |.++.... +++......+|.+.|++.|+++++
T Consensus 264 Lr~Ag~~~l~fia~l~-ll~~P~~g~LR~~~tG~l~~SPf~~~iipii~~~Fli~givyG~~~g~ 327 (513)
T TIGR00819 264 LIIAGVVFIAFIAAIA-LMIIPADGILRDPENGLVAGSPFIKGIVPFIFLFFALPGIAYGIATRS 327 (513)
T ss_pred HHHHHHHHHHHHHHHH-HHHHcCCCcccCCCCCCccCChHHHhHHHHHHHHHHHHHHHHHhhcCc
Confidence 3445666666544333 4455 55553211 456666777788888888888774
No 34
>COG2056 Predicted permease [General function prediction only]
Probab=46.42 E-value=2.5e+02 Score=27.30 Aligned_cols=115 Identities=15% Similarity=0.208 Sum_probs=60.6
Q ss_pred cchhhhhhchhHHHHH--------HHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhh----hhhHHHHHHhhhcCcc
Q psy3723 92 PRLFVSIIGSGVQIFL--------MTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVL----AGYVSARLYTTFKGRE 159 (253)
Q Consensus 92 ~~lls~lvG~G~Qll~--------~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~~s~i----sGyvS~~~yk~f~g~~ 159 (253)
..+.+..+.-.+|++. ...+.+++...|...-++.+.+++=.+=..++-+++ +||... + |.-++-+
T Consensus 244 ~alvaiv~af~vQl~~~~~smilgal~gliv~~~~gv~~~ke~d~~~~~G~kmMa~IgFVMl~AaGfa~V-i-~~TG~V~ 321 (444)
T COG2056 244 LALVAIVVAFAVQLLTFTDSMILGALAGLIVFFLSGVIKWKETDDVFTEGVKMMAFIGFVMLVAAGFAEV-I-NATGAVE 321 (444)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcceehhhhHHHHHhhHHHHHHHHHHHHHHhHHHHH-H-HhccCHH
Confidence 3567888889999964 344555666667666566666666544444333333 777443 2 2222211
Q ss_pred hhhhh----hhhhhhhhHHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHhhhhh
Q psy3723 160 WKKAA----FETAMLYPTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLLLLLCVSLPL 214 (253)
Q Consensus 160 W~~~~----~lt~~~~P~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL 214 (253)
=.-.+ +--+-.+-++++.+.-+ ++.+.-+|| |+|+-.+-.+|+-.|.-|
T Consensus 322 ~LV~s~~~~~g~sK~l~a~lMlvvGL--lITMGIGsS----F~TIPIIA~iyVPLc~~l 374 (444)
T COG2056 322 ELVESSSSIIGQSKLLAALLMLVVGL--LITMGIGSS----FGTIPIIAAIYVPLCLKL 374 (444)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH--HHhcccccc----ccchHHHHHHHHhHHHHh
Confidence 00000 01111122222222222 456788887 888888888877555543
No 35
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=45.70 E-value=87 Score=28.75 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=40.8
Q ss_pred ccccCCCCCcc-hhhhhhchhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhhhhhHHHHHHhhhcCcch
Q psy3723 83 GDVFRPPRHPR-LFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSARLYTTFKGREW 160 (253)
Q Consensus 83 gDVFR~P~~~~-lls~lvG~G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~~s~isGyvS~~~yk~f~g~~W 160 (253)
.+++|.|+... ++..++-.+.+..........+.-.| -............+++..+.++.++++.++++.++.
T Consensus 199 ~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g-----~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~ 272 (382)
T TIGR00902 199 IALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAG-----ISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL 272 (382)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH
Confidence 46788876532 23334434444443333333332222 122333445556778888889999999888876654
No 36
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=44.48 E-value=1.4e+02 Score=24.19 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=20.1
Q ss_pred HHHHHHHhhhhhhhHHHHHHhhhcCcchhh
Q psy3723 133 AITCYVLFGVLAGYVSARLYTTFKGREWKK 162 (253)
Q Consensus 133 ~i~~y~~~s~isGyvS~~~yk~f~g~~W~~ 162 (253)
....+.+.+.+.|...+.+|+..+++++++
T Consensus 72 ~~~~~~l~~~l~gl~~g~~~~~~~~~~~~~ 101 (172)
T PF12822_consen 72 GFPGFTLPAALFGLIAGLLYKKLKKKSKKR 101 (172)
T ss_dssp --HHHHHHHHHHHHHHHHHHT--SS-SHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 347788888888999998998877776654
No 37
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=43.59 E-value=1.5e+02 Score=24.52 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=18.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3723 28 IHWFSIVNSILVIFFLSGILTLIMIRTLRR 57 (253)
Q Consensus 28 ihW~si~Ns~~lv~lL~~~v~~IL~r~l~~ 57 (253)
..|.... .+.+...|+.+++.-|..+-||
T Consensus 33 ~E~~Gt~-aL~ls~~l~~mig~yl~~~~rr 61 (137)
T PF12270_consen 33 GEWVGTV-ALVLSGGLALMIGFYLRFTARR 61 (137)
T ss_pred CCcchHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 3555443 3455567777888777777776
No 38
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=43.26 E-value=2.3e+02 Score=24.79 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHhhhcCc
Q psy3723 130 TSFAITCYVLFGVLAGYVSARLYTTFKGR 158 (253)
Q Consensus 130 ~t~~i~~y~~~s~isGyvS~~~yk~f~g~ 158 (253)
.......+.+++.++++..+++-+..+.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (365)
T TIGR00900 249 YGWVLAAFGLGALLGALLLGLLGRYFKRM 277 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 34455556677777888888776666443
No 39
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=42.35 E-value=92 Score=26.09 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=48.8
Q ss_pred CCCCcchhhhhhchhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhhhhhHHHHHHhh-hcC-cchhh
Q psy3723 88 PPRHPRLFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSARLYTT-FKG-REWKK 162 (253)
Q Consensus 88 ~P~~~~lls~lvG~G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~~s~isGyvS~~~yk~-f~g-~~W~~ 162 (253)
-|.+.+|.|+++-.=.+++.+++++++..-++... ...++.++.+...||..+|-|.+ +.+ ..|+-
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e---------~~~~~~~~lg~~l~fl~~r~ysRkl~~~~~~Qp 136 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSE---------LIVIFGAFLGLALGFLLARRYSRKLAKRTEWQP 136 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Confidence 35677899999999999999888888866655432 44566677788899999999965 332 35653
No 40
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=41.09 E-value=35 Score=31.83 Aligned_cols=43 Identities=12% Similarity=0.264 Sum_probs=31.9
Q ss_pred HHHHHhcCCCCcChHHHHHHHHHHHHhhhhhhhhhhhhhcccC
Q psy3723 184 FFIWGKRSSGAVPFSTMLSLLLLLLCVSLPLVFLGAYFGYRKQ 226 (253)
Q Consensus 184 ~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~g~k~~ 226 (253)
...-.+.|-.+.-...++..+.++-.|-.|++++.|++|.+.+
T Consensus 239 ~l~d~~~~~i~~~~N~~mk~lTv~s~if~pptliagiyGMNf~ 281 (316)
T PRK11085 239 FLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSYGMNFE 281 (316)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 3333444444455667889999999999999999999997643
No 41
>PRK11043 putative transporter; Provisional
Probab=40.68 E-value=1.9e+02 Score=26.42 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=20.0
Q ss_pred HHHHHHHhhhhhhhHHHHHHhhhcCcchh
Q psy3723 133 AITCYVLFGVLAGYVSARLYTTFKGREWK 161 (253)
Q Consensus 133 ~i~~y~~~s~isGyvS~~~yk~f~g~~W~ 161 (253)
....+.++..++++.++++.++++.++..
T Consensus 243 ~~~~~~~~~~~g~~~~~~l~~r~~~~~~~ 271 (401)
T PRK11043 243 SYVPQTIAFLVGGYGCRAALQKWGGEQLL 271 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 34455667777888888887777766654
No 42
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=40.39 E-value=1.5e+02 Score=29.14 Aligned_cols=83 Identities=12% Similarity=0.096 Sum_probs=50.7
Q ss_pred CCceEEeccccCCCCCcch----hh-hhhchhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhhhhhHHHH
Q psy3723 76 SGWKLVHGDVFRPPRHPRL----FV-SIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSAR 150 (253)
Q Consensus 76 ~GWKlv~gDVFR~P~~~~l----ls-~lvG~G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~~s~isGyvS~~ 150 (253)
.|||.+..-+=+-.+++.+ ++ .+..+|+|-+.....+..-..+|+-..+ +....++=.++++++.+..++
T Consensus 265 ~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~-----l~~~~l~~~i~a~~Ga~~~g~ 339 (477)
T PF11700_consen 265 FGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQ-----LIVFGLVVQIVAIIGALLFGW 339 (477)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 5677664332222334322 23 3457899998866655554566654321 445555566688889999999
Q ss_pred HHhhhcCc--chhhh
Q psy3723 151 LYTTFKGR--EWKKA 163 (253)
Q Consensus 151 ~yk~f~g~--~W~~~ 163 (253)
+-++++.| +....
T Consensus 340 l~~r~g~k~~~~l~~ 354 (477)
T PF11700_consen 340 LQDRFGPKTKRTLLI 354 (477)
T ss_pred HHHHhCCchhHHHHH
Confidence 88889887 54433
No 43
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=39.60 E-value=1.1e+02 Score=24.35 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=46.8
Q ss_pred cCCCCCcchhhhhhchhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhhhhhHHHHHHhh
Q psy3723 86 FRPPRHPRLFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSARLYTT 154 (253)
Q Consensus 86 FR~P~~~~lls~lvG~G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~~s~isGyvS~~~yk~ 154 (253)
...|....+.++++.-++=++.++++.++...++.. ....++..+.+.+.||.-.|.|..
T Consensus 60 v~i~~~~~~~aa~l~Y~lPll~li~g~~l~~~~~~~---------e~~~~l~~l~~l~~~~~~~~~~~~ 119 (135)
T PF04246_consen 60 VEIPESSLLKAAFLVYLLPLLALIAGAVLGSYLGGS---------ELWAILGGLLGLALGFLILRLFDR 119 (135)
T ss_pred EEeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667778899999999999988888777766543 455667778888899999998865
No 44
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=39.34 E-value=4e+02 Score=26.48 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHHhhhhhhhHHHHHHhhhcCcch
Q psy3723 127 GALTSFAITCYVLFGVLAGYVSARLYTTFKGREW 160 (253)
Q Consensus 127 g~l~t~~i~~y~~~s~isGyvS~~~yk~f~g~~W 160 (253)
.........++.++++++|...+++-+.++.++.
T Consensus 253 a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~l 286 (524)
T PF05977_consen 253 ASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRL 286 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchh
Confidence 3445667778888999999999988777765544
No 45
>COG5393 Predicted membrane protein [Function unknown]
Probab=38.69 E-value=67 Score=26.04 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=33.7
Q ss_pred chhhhhhchhHHHHHHHHHHHHHHH--HhccCCCCCc-hHHHHHHHHHHHhhhhhhhHHHHHHhhh
Q psy3723 93 RLFVSIIGSGVQIFLMTLVTLFVAM--LGMLSPSSRG-ALTSFAITCYVLFGVLAGYVSARLYTTF 155 (253)
Q Consensus 93 ~lls~lvG~G~Qll~~~~~~l~~~~--~g~~~~~~~g-~l~t~~i~~y~~~s~isGyvS~~~yk~f 155 (253)
.++-.+.-.|.-+++..++.+-+.+ +-.+.|.+|= ........+|+++++.+++ ++||..
T Consensus 46 nll~lllm~gLtl~fa~~~lmsL~vLvi~~f~~tyRl~a~~a~~~vl~vl~~i~ciW---~lrks~ 108 (131)
T COG5393 46 NLLQLLLMAGLTLLFAAFGLMSLMVLVIWAFDPTYRLNAMIATTAVLLVLALIGCIW---TLRKSR 108 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 4444444455555555444443332 2235555554 6666777888888887776 345443
No 46
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=38.19 E-value=2.3e+02 Score=27.32 Aligned_cols=104 Identities=15% Similarity=0.217 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhhhhhcCCCCCchhhhhcCCceEEeccccCCCCCc-chhhhhhchhHHHHHHHHHH
Q psy3723 35 NSILVIFFLSGILTLIMIRTLR-RDIARYNAGDEGIDEVLEESGWKLVHGDVFRPPRHP-RLFVSIIGSGVQIFLMTLVT 112 (253)
Q Consensus 35 Ns~~lv~lL~~~v~~IL~r~l~-~D~~~y~~~~~~~~~~~e~~GWKlv~gDVFR~P~~~-~lls~lvG~G~Qll~~~~~~ 112 (253)
..|.++-.++.+....+.+.+- +|.. ++ . +.+.. + .-+++|.|+-. .++..+++.|-|+..-+-+.
T Consensus 168 ~~F~~ia~l~ll~~~~~~~~lP~~~~~--~~--~-~~~~~--~-----~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~ 235 (394)
T COG2814 168 ATFLAIAVLALLALLLLWKLLPPSEIS--GS--L-PGPLR--T-----LLRLLRRPGVLLGLLATFLFMTGHFALYTYIR 235 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccCC--CC--C-Ccchh--H-----HHHHhcCchHHHHHHHHHHHHcchhhhHHhHH
Confidence 3455555566666667777776 4321 11 0 00000 0 23458888664 44667777777876544443
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHHhhhhhhhHHHHHHhh
Q psy3723 113 LFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSARLYTT 154 (253)
Q Consensus 113 l~~~~~g~~~~~~~g~l~t~~i~~y~~~s~isGyvS~~~yk~ 154 (253)
=++.-.. .-+.+..+..++.|=.+++++.+.++|+.++
T Consensus 236 P~L~~v~----g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr 273 (394)
T COG2814 236 PFLESVA----GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR 273 (394)
T ss_pred HHHHHcc----CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3332211 2245678899999999999999999998766
No 47
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=38.14 E-value=1.5e+02 Score=31.63 Aligned_cols=31 Identities=3% Similarity=0.120 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHhhhcCc
Q psy3723 128 ALTSFAITCYVLFGVLAGYVSARLYTTFKGR 158 (253)
Q Consensus 128 ~l~t~~i~~y~~~s~isGyvS~~~yk~f~g~ 158 (253)
.........+.+++.+++..++++.+.....
T Consensus 261 ~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~ 291 (1140)
T PRK06814 261 NVATLFLAVFSVGVAVGSFLASKLSEGRITL 291 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence 3445556677778888888888887654433
No 48
>KOG4580|consensus
Probab=38.07 E-value=1e+02 Score=24.53 Aligned_cols=60 Identities=17% Similarity=0.285 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHh-------hhcCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhc
Q psy3723 128 ALTSFAITCYVLFGVLAGYVSARLYT-------TFKGREWKKAAFETAMLYPTIVFSTCFLLNFFIWGKR 190 (253)
Q Consensus 128 ~l~t~~i~~y~~~s~isGyvS~~~yk-------~f~g~~W~~~~~lt~~~~P~~~~~i~~~~N~i~~~~~ 190 (253)
.+-...-..|.+-.+++|+.|-++|. +-++....- .-+=.+-..++.+..++|++.-.+.
T Consensus 43 ~~g~~~a~v~t~vaif~~~ya~~lYlwRa~~I~~R~~~pyDd---~~GP~~v~~vl~valivN~~~~f~~ 109 (112)
T KOG4580|consen 43 RLGILSAYVYTLVAIFCGFYALFLYLWRASMIRQRSPGPYDD---RLGPTLVCVVLLVALIVNFILAFKA 109 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC---cccchHHHHHHHHHHHHHHHHhhhh
Confidence 34445556777888889999999984 222222110 0011112244556677888765543
No 49
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=37.73 E-value=96 Score=31.63 Aligned_cols=46 Identities=9% Similarity=0.114 Sum_probs=27.7
Q ss_pred CCCchHHHHHHHHHHHhhhhhhhHHHHHHhhhcCcchhhhhhhhhhhhh
Q psy3723 124 SSRGALTSFAITCYVLFGVLAGYVSARLYTTFKGREWKKAAFETAMLYP 172 (253)
Q Consensus 124 ~~~g~l~t~~i~~y~~~s~isGyvS~~~yk~f~g~~W~~~~~lt~~~~P 172 (253)
+.|+.........++....+++.++..++. ..+|+++..++....+
T Consensus 162 k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~---~~~WRw~~~~~~i~~~ 207 (599)
T PF06609_consen 162 KWRGLGLAIASIPFIITTWISPLIAQLFAA---HSGWRWIFYIFIIWSG 207 (599)
T ss_pred chhhhHhHHHHHHHHhhhcccHHHHHHhcc---CCCcchHHHHHHHHHH
Confidence 455544444444556666677777776543 3589987766655433
No 50
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=37.42 E-value=2.8e+02 Score=24.23 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhhcCc
Q psy3723 132 FAITCYVLFGVLAGYVSARLYTTFKGR 158 (253)
Q Consensus 132 ~~i~~y~~~s~isGyvS~~~yk~f~g~ 158 (253)
.....+.+.+.++....+++-++++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~g~l~dr~g~~ 270 (377)
T TIGR00890 244 LAVSISSIFNGGGRPFLGALSDKIGRQ 270 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445555566666666665555443
No 51
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=37.37 E-value=1.6e+02 Score=26.20 Aligned_cols=30 Identities=7% Similarity=0.328 Sum_probs=20.3
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhhcCcchh
Q psy3723 132 FAITCYVLFGVLAGYVSARLYTTFKGREWK 161 (253)
Q Consensus 132 ~~i~~y~~~s~isGyvS~~~yk~f~g~~W~ 161 (253)
.....+.+++.+++..++++.++++.+++.
T Consensus 246 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 275 (385)
T TIGR00710 246 LLFALNIIAMIFGGFLNGRFIKKWGAKSLL 275 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 344455667777888888887777665544
No 52
>KOG0569|consensus
Probab=36.16 E-value=2.1e+02 Score=28.43 Aligned_cols=156 Identities=15% Similarity=0.092 Sum_probs=0.0
Q ss_pred hhhhhhhcCCCCCchhhhhcCCceEEe----------ccccCCCCCc-chhhhhhchhHHHHHHHHHHHHHHHHhccCCC
Q psy3723 56 RRDIARYNAGDEGIDEVLEESGWKLVH----------GDVFRPPRHP-RLFVSIIGSGVQIFLMTLVTLFVAMLGMLSPS 124 (253)
Q Consensus 56 ~~D~~~y~~~~~~~~~~~e~~GWKlv~----------gDVFR~P~~~-~lls~lvG~G~Qll~~~~~~l~~~~~g~~~~~ 124 (253)
+|.+++|-..++++++.+|+.-++..+ -|++|.|.+. .++..++=+..|.+.-.-.+...+..-+.+-.
T Consensus 222 ~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG 301 (485)
T KOG0569|consen 222 RKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAG 301 (485)
T ss_pred HHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcC
Q ss_pred CCchHHHHHHHHHHHhhhhhhhHHHHHHhhhcCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCcChHHHHHHH
Q psy3723 125 SRGALTSFAITCYVLFGVLAGYVSARLYTTFKGREWKKAAFETAMLYPTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLL 204 (253)
Q Consensus 125 ~~g~l~t~~i~~y~~~s~isGyvS~~~yk~f~g~~W~~~~~lt~~~~P~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~ 204 (253)
-...-...+-..--.-+.++-.+|..+-...| +++....-...+.+-.+++.+...++-... +......+.
T Consensus 302 ~~~~~a~~an~~~g~v~~~~t~~~~~lid~~g-RRpLll~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~y~~i~ 372 (485)
T KOG0569|consen 302 FTPEEAQYANLGIGIVNLLSTLVSPFLIDRLG-RRPLLLISLSLMAVALLLMSIALFLSNSFG--------SWLSYLCIA 372 (485)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHH
Q ss_pred HHHHHhhhhhhhhhhh
Q psy3723 205 LLLLCVSLPLVFLGAY 220 (253)
Q Consensus 205 ~lw~~v~~PL~~iG~~ 220 (253)
++..++...-.=.|.+
T Consensus 373 ~~~~~~~~f~~G~gpi 388 (485)
T KOG0569|consen 373 AIFLFIISFAIGPGPI 388 (485)
T ss_pred HHHHHHHhhhcCCCch
No 53
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=35.75 E-value=41 Score=23.77 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=26.4
Q ss_pred cchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhc
Q psy3723 158 REWKKAAFETAMLYPTIVFSTCFLLNFFIWGKR 190 (253)
Q Consensus 158 ~~W~~~~~lt~~~~P~~~~~i~~~~N~i~~~~~ 190 (253)
++|+...+++..++|.+....+--..+++|.++
T Consensus 19 ~e~itFl~la~~l~PilsV~~VG~yGFiVWM~Q 51 (62)
T COG4459 19 SEWITFLFLAFGLFPILSVAFVGGYGFIVWMFQ 51 (62)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 379999999999999998887777777777543
No 54
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=34.66 E-value=1.5e+02 Score=26.38 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=10.6
Q ss_pred HHHHhhhhhhhHHHHHHhhhcCc
Q psy3723 136 CYVLFGVLAGYVSARLYTTFKGR 158 (253)
Q Consensus 136 ~y~~~s~isGyvS~~~yk~f~g~ 158 (253)
++.+.+.++...++++-++++.+
T Consensus 269 ~~~~~~~~~~~~~g~l~~r~g~~ 291 (366)
T TIGR00886 269 LGGLLGSLARPLGGAISDRLGGA 291 (366)
T ss_pred HHHHHHHHHhhccchHHHhhccc
Confidence 34444444444455444445443
No 55
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=34.56 E-value=4.3e+02 Score=27.99 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHhhhc
Q psy3723 130 TSFAITCYVLFGVLAGYVSARLYTTFK 156 (253)
Q Consensus 130 ~t~~i~~y~~~s~isGyvS~~~yk~f~ 156 (253)
.......+.+++++++++++++-+.++
T Consensus 271 ~g~~~~~~~ig~~~g~~~~g~l~~r~~ 297 (1146)
T PRK08633 271 VQYLLAASAIGIGIGSLLAGRLSGRHI 297 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCce
Confidence 344455566677777777777765544
No 56
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=33.81 E-value=4e+02 Score=24.94 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=15.3
Q ss_pred cccCCCCCcc-hhhhhhchhHHHHH
Q psy3723 84 DVFRPPRHPR-LFVSIIGSGVQIFL 107 (253)
Q Consensus 84 DVFR~P~~~~-lls~lvG~G~Qll~ 107 (253)
+++|.|+... .++.++-.|.|...
T Consensus 227 ~~~~~~~~~~~~l~~f~yvg~e~~~ 251 (410)
T TIGR00885 227 RLARIRHYREGVIAQFFYVGVQIMC 251 (410)
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHH
Confidence 5567665543 55677778888544
No 57
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=33.68 E-value=44 Score=28.35 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=14.8
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHh
Q psy3723 33 IVNSILVIF-FLSGILTLIMIRTLR 56 (253)
Q Consensus 33 i~Ns~~lv~-lL~~~v~~IL~r~l~ 56 (253)
+..++.+++ +-+++++.+++|++|
T Consensus 94 l~R~~~Vl~g~s~l~i~yfvir~~R 118 (163)
T PF06679_consen 94 LKRALYVLVGLSALAILYFVIRTFR 118 (163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 445555544 444566678888885
No 58
>PRK10054 putative transporter; Provisional
Probab=33.52 E-value=2.2e+02 Score=26.33 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHhhhcCcch
Q psy3723 130 TSFAITCYVLFGVLAGYVSARLYTTFKGREW 160 (253)
Q Consensus 130 ~t~~i~~y~~~s~isGyvS~~~yk~f~g~~W 160 (253)
....+..+.......++..+++.+..+.++.
T Consensus 246 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 276 (395)
T PRK10054 246 VAVVLPVNAAMVVSLQYSVGRRLNAANIRPL 276 (395)
T ss_pred HHHHHHhhhhheeeehhHHHHHHccCCchhH
Confidence 3345555555666667777777666554443
No 59
>KOG4812|consensus
Probab=32.59 E-value=2e+02 Score=26.21 Aligned_cols=70 Identities=20% Similarity=0.327 Sum_probs=42.0
Q ss_pred hchhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhhhhhHHH-------------------HHHhhhcCcc
Q psy3723 99 IGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSA-------------------RLYTTFKGRE 159 (253)
Q Consensus 99 vG~G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~~s~isGyvS~-------------------~~yk~f~g~~ 159 (253)
||++.-++..++...+|-.+|++ +.|+++--.+|-.++ .++..++|++
T Consensus 157 vGnd~~F~~af~vAflFnwIGFl-------------ltycl~tT~agRYGA~~GfGLsLikwilIv~~sd~f~~y~n~q~ 223 (262)
T KOG4812|consen 157 VGNDGIFMWAFIVAFLFNWIGFL-------------LTYCLTTTHAGRYGAISGFGLSLIKWILIVRFSDDFESYFNGQY 223 (262)
T ss_pred cccchHHHHHHHHHHHHHHHHHH-------------HHHHHHhhHhhhhhhhhccchhhheeeEEeecccccccccccch
Confidence 78888888877777777767652 344444444444333 3344678889
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHH
Q psy3723 160 WKKAAFETAMLYPTIVFSTCFLLNFF 185 (253)
Q Consensus 160 W~~~~~lt~~~~P~~~~~i~~~~N~i 185 (253)
|.+..++ +-|+++.+--++|.+
T Consensus 224 wLwwi~~----vlG~ll~lr~~i~Yi 245 (262)
T KOG4812|consen 224 WLWWIFL----VLGLLLFLRGFINYI 245 (262)
T ss_pred HHHHHHH----HHHHHHHHHHHHhHH
Confidence 9875544 234444455555655
No 60
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=32.56 E-value=2.7e+02 Score=25.50 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHh----hhhhhhcCCCCCchhhhhcCCce
Q psy3723 45 GILTLIMIRTLR----RDIARYNAGDEGIDEVLEESGWK 79 (253)
Q Consensus 45 ~~v~~IL~r~l~----~D~~~y~~~~~~~~~~~e~~GWK 79 (253)
..+++...|.+- ||+-.+++ |.|+++..|++
T Consensus 38 ~~l~~~~~~n~am~~~Ndy~D~~~----d~dn~r~~g~~ 72 (282)
T PRK13105 38 GTVFFLIPYNLAMYGINDVFDYES----DLRNPRKGGVE 72 (282)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhc----CCCCcccCCCC
Confidence 344555566665 66544433 23334455764
No 61
>PRK03545 putative arabinose transporter; Provisional
Probab=32.45 E-value=3.9e+02 Score=24.32 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhhcC
Q psy3723 132 FAITCYVLFGVLAGYVSARLYTTFKG 157 (253)
Q Consensus 132 ~~i~~y~~~s~isGyvS~~~yk~f~g 157 (253)
.....+.+.+.++.++.+++.++++.
T Consensus 245 ~~~~~~~~~~~~g~~~~g~l~dr~~~ 270 (390)
T PRK03545 245 LLLLLFGGAGIIGSVLFSRLGNRHPS 270 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccch
Confidence 33445566778888888888776653
No 62
>PRK03699 putative transporter; Provisional
Probab=32.11 E-value=4e+02 Score=24.37 Aligned_cols=26 Identities=4% Similarity=0.006 Sum_probs=14.5
Q ss_pred HHHHhhhhhhhHHHHHHhhhcCcchh
Q psy3723 136 CYVLFGVLAGYVSARLYTTFKGREWK 161 (253)
Q Consensus 136 ~y~~~s~isGyvS~~~yk~f~g~~W~ 161 (253)
++.+.+.++...++++-++++.+++.
T Consensus 249 ~~~~~~~ig~~~~g~l~dr~~~~~~l 274 (394)
T PRK03699 249 NFWMAYMVGMWIFSFIVRFFDLQRIL 274 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhHH
Confidence 34444555566666666666665543
No 63
>PRK11715 inner membrane protein; Provisional
Probab=31.72 E-value=3.3e+02 Score=26.72 Aligned_cols=70 Identities=21% Similarity=0.283 Sum_probs=36.1
Q ss_pred CchHHHHHHHHHHHhhhhhhhHHHHHHhhhcCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHH
Q psy3723 126 RGALTSFAITCYVLFGVLAGYVSARLYTTFKGREWKKAAFETAMLYPTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLL 205 (253)
Q Consensus 126 ~g~l~t~~i~~y~~~s~isGyvS~~~yk~f~g~~W~~~~~lt~~~~P~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~ 205 (253)
-|--..-.+..-++.+.++.|+++-+ ++||+-... +..+-++ +.++-.+...++ .|+=.|++...+.
T Consensus 355 igF~~AYliAa~a~v~li~~Y~~~vl------~~~k~g~~~-~~~L~~L----Yg~Ly~lLq~ED--yALL~GSllLF~~ 421 (436)
T PRK11715 355 IGFTLAYLIAALACVLLIGFYLSAVL------RSWKRGLLF-AAALAAL----YGVLYGLLQSED--YALLLGSLLLFAV 421 (436)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHH------hcchHHHHH-HHHHHHH----HHHHHHHHHHhH--HHHHHHHHHHHHH
Confidence 33334445555666777788888776 777764433 2332333 333333333332 3444566665554
Q ss_pred HHH
Q psy3723 206 LLL 208 (253)
Q Consensus 206 lw~ 208 (253)
+-+
T Consensus 422 La~ 424 (436)
T PRK11715 422 LAL 424 (436)
T ss_pred HHH
Confidence 443
No 64
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=31.32 E-value=1.5e+02 Score=27.99 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=19.5
Q ss_pred CchHHHHHHHHHHHhhhhhhhHHHHHHhh
Q psy3723 126 RGALTSFAITCYVLFGVLAGYVSARLYTT 154 (253)
Q Consensus 126 ~g~l~t~~i~~y~~~s~isGyvS~~~yk~ 154 (253)
-+.......+.-+++.+++|+.+.|..+.
T Consensus 291 ~~~~~~~~~~~~~~g~~~~G~l~dr~~~~ 319 (452)
T PRK11273 291 SSWAYFLYEYAGIPGTLLCGWMSDKVFRG 319 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34444455555566888999999988643
No 65
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=30.88 E-value=2.3e+02 Score=21.14 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=17.9
Q ss_pred HhhhhhhhhhhhhhcccCCCCCCcc
Q psy3723 209 CVSLPLVFLGAYFGYRKQPIQLPVR 233 (253)
Q Consensus 209 ~v~~PL~~iG~~~g~k~~~~~~P~~ 233 (253)
...+-+++.|.+-+.|.++.++|.-
T Consensus 81 l~~~v~~I~~~~~a~~g~~~~~P~~ 105 (109)
T PF09685_consen 81 LLSLVLSIIGAIKANKGEPYRYPFI 105 (109)
T ss_pred HHHHHHHHHHHHHHHCCCeeecCee
Confidence 4456677788888878777777743
No 66
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=30.40 E-value=3e+02 Score=25.11 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=18.6
Q ss_pred HHHHHHHhhhhhhhHHHHHHhhhcCcc
Q psy3723 133 AITCYVLFGVLAGYVSARLYTTFKGRE 159 (253)
Q Consensus 133 ~i~~y~~~s~isGyvS~~~yk~f~g~~ 159 (253)
...+..++..+.++.++++.++++.++
T Consensus 245 ~~~~~~~~~~~~~~~~g~l~~r~~~~~ 271 (382)
T PRK11128 245 LWSLGVVAEVLIFAFSNRLFRRWSARD 271 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 333556677778888888887776544
No 67
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=30.10 E-value=3.8e+02 Score=26.27 Aligned_cols=69 Identities=23% Similarity=0.383 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHHhhhhhhhHHHHHHhhhcCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHH
Q psy3723 127 GALTSFAITCYVLFGVLAGYVSARLYTTFKGREWKKAAFETAMLYPTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLLL 206 (253)
Q Consensus 127 g~l~t~~i~~y~~~s~isGyvS~~~yk~f~g~~W~~~~~lt~~~~P~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~l 206 (253)
|--..-++..-++.+.++.|+++-+ ++||+-... +.++-++.-.++.++. .+ ..|+=.|++...+.+
T Consensus 350 ~F~~AYliAa~a~i~Li~~Y~~~vl------~~~k~~~~~-~~~L~~LY~~Ly~lLq----~E--dyALL~GSl~LF~iL 416 (430)
T PF06123_consen 350 GFNLAYLIAALACIGLISLYLSSVL------KSWKRGLIF-AGLLAALYGFLYVLLQ----SE--DYALLMGSLLLFIIL 416 (430)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH------hcchHHHHH-HHHHHHHHHHHHHHHH----hh--hHHHHHHHHHHHHHH
Confidence 3334445556666777888888876 777764433 3333333333333332 22 334445666555444
Q ss_pred HH
Q psy3723 207 LL 208 (253)
Q Consensus 207 w~ 208 (253)
-+
T Consensus 417 a~ 418 (430)
T PF06123_consen 417 AL 418 (430)
T ss_pred HH
Confidence 33
No 68
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=29.97 E-value=1.1e+02 Score=22.46 Aligned_cols=27 Identities=11% Similarity=0.372 Sum_probs=21.3
Q ss_pred chHHHHHHHHHHHhhhhhhhHHHHHHh
Q psy3723 127 GALTSFAITCYVLFGVLAGYVSARLYT 153 (253)
Q Consensus 127 g~l~t~~i~~y~~~s~isGyvS~~~yk 153 (253)
..+.+..+.+.++.|++.||+...+..
T Consensus 10 e~l~~~il~~~~iisfi~Gy~~q~~~~ 36 (76)
T PF06645_consen 10 EKLMQYILIISAIISFIVGYITQSFSY 36 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888999999998887643
No 69
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=29.56 E-value=1.5e+02 Score=25.60 Aligned_cols=53 Identities=26% Similarity=0.453 Sum_probs=33.0
Q ss_pred cchhhhh-hchhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHH-hhhhhhhHH
Q psy3723 92 PRLFVSI-IGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVL-FGVLAGYVS 148 (253)
Q Consensus 92 ~~lls~l-vG~G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~-~s~isGyvS 148 (253)
.++++++ +|.|+=..+. ...+-++ ...|.+-+-+.|..-++|++ .|++-|+.+
T Consensus 68 ~vlF~~ClLGa~ac~a~~---~fmfpVl-~lkPrkFiLlwTmgslLfvl~Fg~l~Gf~a 122 (201)
T COG5102 68 AVLFSACLLGAGACSAFL---YFMFPVL-RLKPRKFILLWTMGSLLFVLMFGFLLGFRA 122 (201)
T ss_pred HHHHHHHHhhhHHHHHHH---HHHHHHH-hcCccceeeehhHHHHHHHHHHHHHHhHHH
Confidence 4666444 8888755322 2222222 35677777788887777777 677888764
No 70
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=29.40 E-value=47 Score=30.17 Aligned_cols=31 Identities=16% Similarity=0.522 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHHHhhhhhhhhhhhhhcccC
Q psy3723 196 PFSTMLSLLLLLLCVSLPLVFLGAYFGYRKQ 226 (253)
Q Consensus 196 pf~ti~~l~~lw~~v~~PL~~iG~~~g~k~~ 226 (253)
-.-.++..+.++-.|..|+++++|++|.+.+
T Consensus 253 ~~N~~mk~LTvvt~IflP~t~IaGiyGMNf~ 283 (318)
T TIGR00383 253 KMNEIMKILTVVSTIFIPLTFIAGIYGMNFK 283 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3445778889999999999999999997753
No 71
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=28.76 E-value=4.9e+02 Score=24.34 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Q psy3723 39 VIFFLSGILTLIMIRTLRRDIARYNAGDE 67 (253)
Q Consensus 39 lv~lL~~~v~~IL~r~l~~D~~~y~~~~~ 67 (253)
-+++|.+.+.+...-..-||+..|.+-.|
T Consensus 46 ~ll~Li~~~~iq~~vN~~NdY~D~~KG~D 74 (303)
T COG1575 46 ALLALIAAILLQILVNLANDYFDYKKGTD 74 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcCCC
Confidence 34444455555556667788777766444
No 72
>PF00528 BPD_transp_1: Binding-protein-dependent transport system inner membrane component; InterPro: IPR000515 Bacterial binding protein-dependent transport systems [, ] are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown [, ] that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems [] to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices, however they can be classified into seven families which have been respectively termed: araH, cysTW, fecCD, hisMQ, livHM, malFG and oppBC.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2ONK_H 3PUX_G 3PUY_G 2R6G_G 3PV0_G 3RLF_G 3PUW_G 3PUV_G 3PUZ_G 3TUI_E ....
Probab=28.19 E-value=1.4e+02 Score=23.76 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=43.1
Q ss_pred hhhhhHHHHHHhhhcCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHhhhhhhhhhhhh
Q psy3723 142 VLAGYVSARLYTTFKGREWKKAAFETAMLYPTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLLLLLCVSLPLVFLGAYF 221 (253)
Q Consensus 142 ~isGyvS~~~yk~f~g~~W~~~~~lt~~~~P~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~ 221 (253)
..-|+..| .++....+++.+.........|..+.......=+ .-..... .....+++.....+.|.....-.-
T Consensus 2 ~~lg~~~a-~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~-----~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~ 74 (185)
T PF00528_consen 2 VPLGILLA-LRKNRKFKRILRPLINIPLSIPSIVIGILLILIF-----FFLNSFG-FGFLPIILAYVIFWFPFAIIIIYN 74 (185)
T ss_dssp HHHHHHHH-CSSTCTTHHHHHHHHHHHHHS-HHHHHHHHHHHH-----TTSCSCT-TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHH-HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhcccc-cchhHHHHHHHHHHHHHHHHHHHH
Confidence 34455566 4445566777777788888888887665554322 1112222 233335555666677877776655
Q ss_pred hcc
Q psy3723 222 GYR 224 (253)
Q Consensus 222 g~k 224 (253)
+.+
T Consensus 75 ~~~ 77 (185)
T PF00528_consen 75 ALR 77 (185)
T ss_dssp HHC
T ss_pred HHh
Confidence 544
No 73
>PRK09546 zntB zinc transporter; Reviewed
Probab=27.69 E-value=61 Score=29.79 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcccC
Q psy3723 198 STMLSLLLLLLCVSLPLVFLGAYFGYRKQ 226 (253)
Q Consensus 198 ~ti~~l~~lw~~v~~PL~~iG~~~g~k~~ 226 (253)
...+.++.++-.+.+|++++.|++|.+.+
T Consensus 261 N~~m~~Ltilt~IflPlT~IaGiyGMNf~ 289 (324)
T PRK09546 261 NRRTYTMSLMAMVFLPTTFLTGLFGVNLG 289 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 34455666666777799999999997753
No 74
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=27.33 E-value=4.3e+02 Score=23.22 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=12.2
Q ss_pred HHHHHhhhhhhhHHHHHHhhhcCcc
Q psy3723 135 TCYVLFGVLAGYVSARLYTTFKGRE 159 (253)
Q Consensus 135 ~~y~~~s~isGyvS~~~yk~f~g~~ 159 (253)
..+.+.+.++....+++-++++.++
T Consensus 262 ~~~~~~~~~~~~~~g~l~dr~g~~~ 286 (394)
T TIGR00883 262 MLSLILFFITIPLSGALSDRIGRRP 286 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHH
Confidence 3344445555555555555555443
No 75
>KOG0253|consensus
Probab=27.28 E-value=5.2e+02 Score=25.68 Aligned_cols=110 Identities=23% Similarity=0.263 Sum_probs=67.8
Q ss_pred chhhhhhchhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHH-hhhhhhh-HHHHHHhh--hcCcchhhhhhhhh
Q psy3723 93 RLFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVL-FGVLAGY-VSARLYTT--FKGREWKKAAFETA 168 (253)
Q Consensus 93 ~lls~lvG~G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~-~s~isGy-vS~~~yk~--f~g~~W~~~~~lt~ 168 (253)
.+.|--+|-+--+-++++++.++..+.-.+|+- ....+++.+ +..++|+ +.+.+|.. ++.++|+..... +
T Consensus 134 ~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf-----~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~ 207 (528)
T KOG0253|consen 134 GLSADTIGRRKGFNLTFLVTGVFGVISGASPNF-----ASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-F 207 (528)
T ss_pred heehhhhhcchhhhhhHHHHHHHHHhhcCCCCe-----ehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-H
Confidence 456667777777888888888888777777652 233344443 5555553 56667765 456788854443 6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHhhhhhhhhhhhh
Q psy3723 169 MLYPTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLLLLLCVSLPLVFLGAYF 221 (253)
Q Consensus 169 ~~~P~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~ 221 (253)
.-.|+-++ -|.++|..-+.. ..=-+|++.++||.++--++
T Consensus 208 ~waig~v~-----ea~law~vm~~~--------gwr~~l~~~~~pl~~~a~f~ 247 (528)
T KOG0253|consen 208 FWAIGQVF-----EALLAWGVMSNF--------GWRYLLFTSSTPLMFAARFL 247 (528)
T ss_pred HHHHHHHH-----HHHHHHHHHHhh--------hHHHHHHHHHhHHHHHHHHH
Confidence 66666554 345555443332 34456777789988875544
No 76
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=27.27 E-value=2.9e+02 Score=25.28 Aligned_cols=24 Identities=17% Similarity=-0.065 Sum_probs=14.3
Q ss_pred HHHhhhhhhhHHHHHHhhhcCcch
Q psy3723 137 YVLFGVLAGYVSARLYTTFKGREW 160 (253)
Q Consensus 137 y~~~s~isGyvS~~~yk~f~g~~W 160 (253)
+..++.+++...+++.++++.++.
T Consensus 260 ~~~~~~~g~~~~g~l~~r~~~~~~ 283 (406)
T PRK15402 260 VFGALIAGNLTLARLTSRRPLRSL 283 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHH
Confidence 334556666777777666655443
No 77
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=27.10 E-value=5.5e+02 Score=24.39 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHhhhcCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH
Q psy3723 130 TSFAITCYVLFGVLAGYVSARLYTTFKGREWKKAAFETAMLYPTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLLLLLC 209 (253)
Q Consensus 130 ~t~~i~~y~~~s~isGyvS~~~yk~f~g~~W~~~~~lt~~~~P~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~~ 209 (253)
+..++++|.++..+++|+-. .||.+ ++|.+-.-.+-.++-++=+++.+++-.+...-=++..+||-.= .+-++
T Consensus 45 ligai~~~li~~~~~~~~~~-~~~~l--e~~i~k~~~~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~----ii~vi 117 (356)
T COG4956 45 LIGAIIFFLISFWFGKYVLN-WLKRL--EEQIRKLPVTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFIST----IIPVI 117 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhHHhhCCccHHHh----HHHHH
Confidence 34577777778777777654 34544 3343333333344444433333333333333334455553221 12233
Q ss_pred hhhhhhhhhhhhhccc
Q psy3723 210 VSLPLVFLGAYFGYRK 225 (253)
Q Consensus 210 v~~PL~~iG~~~g~k~ 225 (253)
+++-|+++|--+|.|+
T Consensus 118 ~t~il~y~G~~~~~k~ 133 (356)
T COG4956 118 LTIILAYFGFQLADKK 133 (356)
T ss_pred HHHHHHHHhhHHhhhh
Confidence 4566778888888664
No 78
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=27.09 E-value=46 Score=29.23 Aligned_cols=30 Identities=23% Similarity=0.525 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhcccC
Q psy3723 197 FSTMLSLLLLLLCVSLPLVFLGAYFGYRKQ 226 (253)
Q Consensus 197 f~ti~~l~~lw~~v~~PL~~iG~~~g~k~~ 226 (253)
-...+..+.++-.|-+||+++.|++|.+..
T Consensus 230 ~n~~m~~LT~~t~iflPlt~i~g~fGMN~~ 259 (292)
T PF01544_consen 230 QNRVMKVLTIVTAIFLPLTFITGIFGMNFK 259 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTS-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 566677788888888999999999997654
No 79
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=26.89 E-value=4.8e+02 Score=23.67 Aligned_cols=22 Identities=14% Similarity=-0.308 Sum_probs=15.3
Q ss_pred hhhhhhhHHHHHHhhhcCcchh
Q psy3723 140 FGVLAGYVSARLYTTFKGREWK 161 (253)
Q Consensus 140 ~s~isGyvS~~~yk~f~g~~W~ 161 (253)
.+.++++.++++.++++.+++.
T Consensus 256 ~~~~g~~~~g~l~~r~g~~~~l 277 (390)
T TIGR02718 256 TVLLGCGGGAWLVRRAGLWRTF 277 (390)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH
Confidence 4555677888888888766544
No 80
>PRK11246 hypothetical protein; Provisional
Probab=26.63 E-value=86 Score=27.92 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=26.2
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3723 24 SDTHIHWFSIVNSILVIFFLSGILTLIMIRTLRRDI 59 (253)
Q Consensus 24 ~~~~ihW~si~Ns~~lv~lL~~~v~~IL~r~l~~D~ 59 (253)
+.+++|-. .|-.-+.+++++++.++|.|++-++-
T Consensus 154 e~~q~~~~--~~~~r~Mll~al~iG~lL~~~l~~~~ 187 (218)
T PRK11246 154 EAKQVDNT--TNILRLMLLLALAIGIVLTRTLLQGK 187 (218)
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34455544 68888888999999999999998764
No 81
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=26.44 E-value=3.4e+02 Score=24.39 Aligned_cols=31 Identities=0% Similarity=-0.006 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHhhhcCcchh
Q psy3723 131 SFAITCYVLFGVLAGYVSARLYTTFKGREWK 161 (253)
Q Consensus 131 t~~i~~y~~~s~isGyvS~~~yk~f~g~~W~ 161 (253)
......|..+..++.++++++-++++.++..
T Consensus 181 ~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l 211 (310)
T TIGR01272 181 AHFTAYTWGGAMVGRFIGSAVMPMISQGRYL 211 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 3344555556666666777776667655543
No 82
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=26.02 E-value=3.2e+02 Score=27.43 Aligned_cols=157 Identities=15% Similarity=0.265 Sum_probs=77.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCC---ch-----hhhhcCCce----------------EE
Q psy3723 26 THIHWFSIVNSILVIFFLSGILTLIMIRTLRRDIARYNAGDEG---ID-----EVLEESGWK----------------LV 81 (253)
Q Consensus 26 ~~ihW~si~Ns~~lv~lL~~~v~~IL~r~l~~D~~~y~~~~~~---~~-----~~~e~~GWK----------------lv 81 (253)
+-.+|+-..-|.+++ +.+...+--|.+..-+.+|+.++++ |+ .++|.+|=| .+
T Consensus 200 p~~N~yF~~aSt~~l---~~v~~~vt~kivePrl~~~~~~~~~~~~~~~~~~Lt~~EkkgLr~Agi~~l~~lall~ll~i 276 (502)
T PF03806_consen 200 PLMNYYFMIASTFVL---TIVGTWVTEKIVEPRLGKYDGDADDDEIEEASSSLTPREKKGLRWAGIALLAFLALLLLLLI 276 (502)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHhhhhhccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345676655554443 3344445556666556666544321 11 112333321 11
Q ss_pred -eccccCCCCCcchhhhhhchhHHHHHHHHHHHHHHHHhccCCCCCc--hHHH-----------HHHHHHHHhhhhhhhH
Q psy3723 82 -HGDVFRPPRHPRLFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRG--ALTS-----------FAITCYVLFGVLAGYV 147 (253)
Q Consensus 82 -~gDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~~~~g~~~~~~~g--~l~t-----------~~i~~y~~~s~isGyv 147 (253)
|+-.+|.|....+..+=.-.|+-.+++....+.-.+.|..+.+-|+ .+.. ..+++|..+-+++=|-
T Consensus 277 P~~a~LR~~~tG~l~~SPf~~gIIpiI~l~F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~ 356 (502)
T PF03806_consen 277 PENAPLRSPETGSLFPSPFMKGIIPIIFLFFLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFN 356 (502)
T ss_pred cCCccccCCCCCcccCChHHHhHHHHHHHHHHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3567899876655555555777777666655555566665543222 2222 2233333333333222
Q ss_pred HHHH--HhhhcCcchhhhhhhhhhhhhHHHHHHHHHHHHH
Q psy3723 148 SARL--YTTFKGREWKKAAFETAMLYPTIVFSTCFLLNFF 185 (253)
Q Consensus 148 S~~~--yk~f~g~~W~~~~~lt~~~~P~~~~~i~~~~N~i 185 (253)
-+.+ .-..+|.++.+..=+++..+-....+...++|++
T Consensus 357 ~Snlg~i~Av~GA~~L~~~~~~~~~l~i~fill~a~iNLf 396 (502)
T PF03806_consen 357 WSNLGTILAVKGAEFLKSLGLPGIPLIIGFILLTAFINLF 396 (502)
T ss_pred hcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 1111 1124456666665555544444444556667776
No 83
>cd01177 IPT_NFkappaB IPT domain of the transcription factor NFkappaB and related transcription factors. NFkappaB is considered a central regulator of stress responses, activated by different stressful conditions, including physical stress, oxidative stress, and exposure to certain chemicals. NFkappaB blocking cell apoptosis in several cell types, gives it an important role in cell proliferation and differentiation.
Probab=25.76 E-value=22 Score=27.94 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=8.9
Q ss_pred ccccCCCCCcch
Q psy3723 83 GDVFRPPRHPRL 94 (253)
Q Consensus 83 gDVFR~P~~~~l 94 (253)
+=|||+|+|...
T Consensus 61 AIvfkTPpY~~~ 72 (102)
T cd01177 61 AIVFRTPPYHDP 72 (102)
T ss_pred EEEEeCCCCCCC
Confidence 457899988653
No 84
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=25.70 E-value=2.8e+02 Score=27.75 Aligned_cols=39 Identities=13% Similarity=0.402 Sum_probs=21.1
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Q psy3723 25 DTHIHWFSIVNSILVIFFLSGILTLIMIRTLRRDIARYNAGD 66 (253)
Q Consensus 25 ~~~ihW~si~Ns~~lv~lL~~~v~~IL~r~l~~D~~~y~~~~ 66 (253)
++...|+-+.-|.++..+++..| -=|++.-.+-.|++++
T Consensus 210 np~~NwyF~~as~~vl~~i~~fv---TdKivEPRLg~~~~~~ 248 (516)
T COG2978 210 NPLMNWYFIAASVFVLTLIGWFV---TDKIIEPRLGPYQGLS 248 (516)
T ss_pred CcchhHHHHHHHHHHHHHHHHHH---hccccccCCCCCCCcc
Confidence 34557877777766655544433 3355544444555433
No 85
>TIGR00901 2A0125 AmpG-related permease.
Probab=25.54 E-value=4.8e+02 Score=23.18 Aligned_cols=49 Identities=24% Similarity=0.205 Sum_probs=35.9
Q ss_pred cCCCCCchHHHHHHHHHHHhhhhhhhHHHHHHhhhcCcc-----hhhhhhhhhh
Q psy3723 121 LSPSSRGALTSFAITCYVLFGVLAGYVSARLYTTFKGRE-----WKKAAFETAM 169 (253)
Q Consensus 121 ~~~~~~g~l~t~~i~~y~~~s~isGyvS~~~yk~f~g~~-----W~~~~~lt~~ 169 (253)
..+++|+.........+.++..+++..++.++..++++. |+......+.
T Consensus 112 ~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai 165 (356)
T TIGR00901 112 LSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTAL 165 (356)
T ss_pred CCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHH
Confidence 445788888877777888888888888888877776554 8865555443
No 86
>PRK10133 L-fucose transporter; Provisional
Probab=25.51 E-value=5.8e+02 Score=24.11 Aligned_cols=32 Identities=9% Similarity=0.136 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHhhhcCcch
Q psy3723 129 LTSFAITCYVLFGVLAGYVSARLYTTFKGREW 160 (253)
Q Consensus 129 l~t~~i~~y~~~s~isGyvS~~~yk~f~g~~W 160 (253)
.....+..+.++..++.+.++++-++++.++-
T Consensus 296 ~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~ 327 (438)
T PRK10133 296 FAANYLTGTMVCFFIGRFTGTWLISRFAPHKV 327 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 34456677777888888888888877766543
No 87
>KOG4770|consensus
Probab=25.33 E-value=4.2e+02 Score=24.54 Aligned_cols=83 Identities=19% Similarity=0.309 Sum_probs=45.8
Q ss_pred CCceEEeccccCCCCCcchhhhhhchhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHH-hhhhhhhHHHHHHhh
Q psy3723 76 SGWKLVHGDVFRPPRHPRLFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVL-FGVLAGYVSARLYTT 154 (253)
Q Consensus 76 ~GWKlv~gDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~-~s~isGyvS~~~yk~ 154 (253)
.|=|++.-|=-| |.+....+-.++-|+.+..+.+.=..+-....+..-|-|.+.-.++..... +-.+|||.|-.-|..
T Consensus 54 Dg~KL~~KE~l~-P~~sn~~lf~i~P~~s~~~~ll~w~~lPf~~~l~~lnig~lf~la~ssl~vy~ilisGw~SnskYa~ 132 (315)
T KOG4770|consen 54 DGVKLLTKEQLT-PLNSNEVLFLIAPGISFVLSLLEWFVLPFFNVLISLNIGLLFFLAISSLAVYTILISGWSSNSKYAF 132 (315)
T ss_pred HHHHHHhcCCCC-CCcCCceeeeeccHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHHhhhhhhhheeeecccCchhHH
Confidence 455766555444 445555556778888776655433332222223323334333333332222 456799999999988
Q ss_pred hcCcc
Q psy3723 155 FKGRE 159 (253)
Q Consensus 155 f~g~~ 159 (253)
.|+-+
T Consensus 133 lGaLR 137 (315)
T KOG4770|consen 133 LGALR 137 (315)
T ss_pred HHHHH
Confidence 88754
No 88
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=25.20 E-value=1.4e+02 Score=19.98 Aligned_cols=44 Identities=23% Similarity=0.356 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhhhhhHHH
Q psy3723 102 GVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSA 149 (253)
Q Consensus 102 G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~~s~isGyvS~ 149 (253)
|.|+...++... .+|..-.+.-++ .....+...+.|.++|+.+.
T Consensus 7 g~~~~~~i~~g~---~~G~~lD~~~~t-~p~~~~~g~llG~~~g~~~~ 50 (55)
T PF09527_consen 7 GFTMAAPILVGF---FLGYWLDKWFGT-SPWFTLIGLLLGIAAGFYNV 50 (55)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHH
Confidence 666655443333 344433333333 34566667777777887665
No 89
>PF14851 FAM176: FAM176 family
Probab=25.09 E-value=47 Score=27.90 Aligned_cols=28 Identities=18% Similarity=0.142 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3723 31 FSIVNSILVIFFLSGILTLIMIRTLRRDI 59 (253)
Q Consensus 31 ~si~Ns~~lv~lL~~~v~~IL~r~l~~D~ 59 (253)
|-..-++.+++.|+++|.-|..|. |+|.
T Consensus 26 Fv~gVC~GLlLtLcllV~risc~~-r~~~ 53 (153)
T PF14851_consen 26 FVSGVCAGLLLTLCLLVIRISCRP-RKRC 53 (153)
T ss_pred HHHHHHHHHHHHHHHHHhhheeec-cccc
Confidence 344456677888888888887743 4444
No 90
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=24.99 E-value=1.9e+02 Score=23.58 Aligned_cols=26 Identities=15% Similarity=0.433 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHh
Q psy3723 128 ALTSFAITCYVLFGVLAGYVSARLYT 153 (253)
Q Consensus 128 ~l~t~~i~~y~~~s~isGyvS~~~yk 153 (253)
.+-...-..|.+.++++|+.|-.+|.
T Consensus 58 ~~g~~~a~vftivaif~~~ya~~lY~ 83 (126)
T COG5264 58 RLGMISAYVFTIVAIFCGFYALMLYL 83 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455557788888999999999994
No 91
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=24.78 E-value=2.1e+02 Score=29.02 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=7.9
Q ss_pred hhhhhhHHHHHHhhhc
Q psy3723 141 GVLAGYVSARLYTTFK 156 (253)
Q Consensus 141 s~isGyvS~~~yk~f~ 156 (253)
+.+++.+++++-++++
T Consensus 380 ~~vG~~l~G~l~~r~~ 395 (633)
T TIGR00805 380 AGLGYLIGGFIMKKFK 395 (633)
T ss_pred HHHHHhhhhheeeeec
Confidence 3445555555545443
No 92
>COG4420 Predicted membrane protein [Function unknown]
Probab=24.42 E-value=2e+02 Score=25.11 Aligned_cols=45 Identities=22% Similarity=0.396 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHhhhhhhhhh
Q psy3723 174 IVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLLLLLCVSLPLVFLG 218 (253)
Q Consensus 174 ~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG 218 (253)
++++++.++|+..+...+=.-+||--+-.++.+--.+..|+.++.
T Consensus 66 ~~ll~Wi~lNl~~~~~~~wDpyPFi~LnLllS~~AaiqAp~IlmS 110 (191)
T COG4420 66 LLLLLWIVLNLFLVPGLAWDPYPFILLNLLLSTLAAIQAPLILMS 110 (191)
T ss_pred HHHHHHHHHHHhhhcCCcCCCccHHHHHHHHHHHHHHHHhHHHHH
Confidence 567899999999999889999999999999999999999988763
No 93
>PF10852 DUF2651: Protein of unknown function (DUF2651) ; InterPro: IPR020258 This entry contains transmembrane proteins with no known function.
Probab=23.74 E-value=3.2e+02 Score=20.59 Aligned_cols=65 Identities=15% Similarity=0.427 Sum_probs=45.2
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhhcCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHhh
Q psy3723 132 FAITCYVLFGVLAGYVSARLYTTFKGREWKKAAFETAMLYPTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLLLLLCVS 211 (253)
Q Consensus 132 ~~i~~y~~~s~isGyvS~~~yk~f~g~~W~~~~~lt~~~~P~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~~v~ 211 (253)
.+++.+-+..++.|-++.++.|.+ -.-|.+.+++.+++++.... .=+..|..+.
T Consensus 6 fvlfi~Plli~i~sI~Gt~l~k~~-------------yimPivtf~i~Lil~~t~fn-------------~SFf~WvvvY 59 (82)
T PF10852_consen 6 FVLFILPLLIIIISIIGTYLFKKV-------------YIMPIVTFAISLILTFTLFN-------------PSFFFWVVVY 59 (82)
T ss_pred hHHHHhhHHHHHHHHHHhhhccee-------------ehHHHHHHHHHHHHHHHhhC-------------hHHHHHHHHH
Confidence 445556667777777777665432 23377888888887776442 2267899999
Q ss_pred hhhhhhhhhhh
Q psy3723 212 LPLVFLGAYFG 222 (253)
Q Consensus 212 ~PL~~iG~~~g 222 (253)
.=+++++|++.
T Consensus 60 T~~s~i~S~iT 70 (82)
T PF10852_consen 60 TIFSFIVSYIT 70 (82)
T ss_pred HHHHHHHHHHH
Confidence 99999999886
No 94
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=23.63 E-value=6.3e+02 Score=23.91 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=20.5
Q ss_pred HHHHHhhhhhhhHHHHHHhhhcCcc
Q psy3723 135 TCYVLFGVLAGYVSARLYTTFKGRE 159 (253)
Q Consensus 135 ~~y~~~s~isGyvS~~~yk~f~g~~ 159 (253)
..+-+++.++++++|.+|+.++.+.
T Consensus 345 ~~~Glg~~iG~~igG~l~~~~g~~~ 369 (400)
T PF03825_consen 345 LSFGLGGAIGSLIGGWLYDAFGARG 369 (400)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcchh
Confidence 3456789999999999999998664
No 95
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=23.31 E-value=68 Score=29.63 Aligned_cols=43 Identities=12% Similarity=0.197 Sum_probs=31.9
Q ss_pred HHHHHhcCCCCcChHHHHHHHHHHHHhhhhhhhhhhhhhcccC
Q psy3723 184 FFIWGKRSSGAVPFSTMLSLLLLLLCVSLPLVFLGAYFGYRKQ 226 (253)
Q Consensus 184 ~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~g~k~~ 226 (253)
.+.-.+.|--+.-.-.++..+.++-.|-+|+|++.|++|.+.+
T Consensus 245 ~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIagiyGMNf~ 287 (322)
T COG0598 245 SLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITGFYGMNFK 287 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHcccccCCC
Confidence 3333333333444677889999999999999999999997754
No 96
>TIGR00893 2A0114 d-galactonate transporter.
Probab=23.20 E-value=2.3e+02 Score=24.76 Aligned_cols=32 Identities=19% Similarity=0.076 Sum_probs=23.3
Q ss_pred CCCchHHHHHHHHHHHhhhhhhhHHHHHHhhh
Q psy3723 124 SSRGALTSFAITCYVLFGVLAGYVSARLYTTF 155 (253)
Q Consensus 124 ~~~g~l~t~~i~~y~~~s~isGyvS~~~yk~f 155 (253)
..-+.+.....+.-++++.++|+.+-|.-+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 251 LEAGFMASLPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455666666777888899999988877653
No 97
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=23.10 E-value=7.8e+02 Score=24.76 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy3723 196 PFSTMLSLLLLLLCVSLPLVFLGAYFG 222 (253)
Q Consensus 196 pf~ti~~l~~lw~~v~~PL~~iG~~~g 222 (253)
+....+.++++-++.++|+.++|...+
T Consensus 324 ~~~g~~~l~~~gLG~~~Plll~~~~~~ 350 (571)
T PRK00293 324 LLLGGLTLYLLALGMGLPLILITTFGN 350 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888899999999999998755
No 98
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=23.08 E-value=1.6e+02 Score=28.90 Aligned_cols=70 Identities=24% Similarity=0.293 Sum_probs=43.7
Q ss_pred CCCcchhhhhhchhHHHHHHHHHHHHHHH---HhccCCCCCchHHHHHHHHHHHhhhhhhhHHHHHHhhhcCcc
Q psy3723 89 PRHPRLFVSIIGSGVQIFLMTLVTLFVAM---LGMLSPSSRGALTSFAITCYVLFGVLAGYVSARLYTTFKGRE 159 (253)
Q Consensus 89 P~~~~lls~lvG~G~Qll~~~~~~l~~~~---~g~~~~~~~g~l~t~~i~~y~~~s~isGyvS~~~yk~f~g~~ 159 (253)
|....++.+.+-.|+|+...+....+--. +|. ++..-+.+..+.-+.-++...+.|+.|=|.+.++|.++
T Consensus 2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~-~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRr 74 (477)
T TIGR01301 2 PLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGI-PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRR 74 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChH
Confidence 34445666777789999876665554433 333 33344455555666667777788888887765666554
No 99
>PRK15097 cytochrome d terminal oxidase subunit 1; Provisional
Probab=22.87 E-value=4.5e+02 Score=26.50 Aligned_cols=115 Identities=8% Similarity=0.184 Sum_probs=63.7
Q ss_pred cCCCCCc--chhhhhhchhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhhhhhHHHHHHhhhcCcchhhh
Q psy3723 86 FRPPRHP--RLFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSARLYTTFKGREWKKA 163 (253)
Q Consensus 86 FR~P~~~--~lls~lvG~G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~~s~isGyvS~~~yk~f~g~~W~~~ 163 (253)
-|||... .-|=..||.|.=++.+.+..+.+..-+.+. ++|- ++-+.+.+ .-.+++ +..+|++..-.|.+=|.-.
T Consensus 379 ~~PpV~~vf~sFriMVg~G~l~~~l~~~~l~l~~r~~l~-~~rw-~L~~~~~~-~plp~i-A~~~GWi~tEvGRQPWiVy 454 (522)
T PRK15097 379 SIPRVAPLYFAFRIMVACGFLMLAIIALSFWSVIRNRIG-EKKW-LLRAALYG-IPLPWI-AVEAGWFVAEYGRQPWAIG 454 (522)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc-cCcH-HHHHHHHH-HHHHHH-HHHhhhhheecCCCCeEEe
Confidence 4777443 346678888887776666555444333222 1222 22222221 122333 2356667777888888632
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy3723 164 AFETAMLYPTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLLLLLCVSLPLVFLGAYFGYR 224 (253)
Q Consensus 164 ~~lt~~~~P~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~g~k 224 (253)
-+ . --.++.+.++-+.+..-+..+..+..-|..+..++-.|
T Consensus 455 g~-------------------l-~T~~avS~~s~~~v~~sl~~f~~~Y~~L~~~~~~ll~r 495 (522)
T PRK15097 455 EV-------------------L-PTAVANSSLTAGDLLFSMVLICGLYTLFLVAELFLMFK 495 (522)
T ss_pred ce-------------------e-eHhHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1 11222234677777777777777888887777777655
No 100
>PF10268 Tmemb_161AB: Predicted transmembrane protein 161AB; InterPro: IPR019395 This entry represents a family of conserved eukaryotic proteins. Members are putative transmembrane proteins but otherwise the function is not known.
Probab=22.75 E-value=6.8e+02 Score=24.96 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=27.1
Q ss_pred HHHHHhhhhhhhHHHHHH-------h-------hhcCcchhhhhhhhhhhhhHHHHHHHH
Q psy3723 135 TCYVLFGVLAGYVSARLY-------T-------TFKGREWKKAAFETAMLYPTIVFSTCF 180 (253)
Q Consensus 135 ~~y~~~s~isGyvS~~~y-------k-------~f~g~~W~~~~~lt~~~~P~~~~~i~~ 180 (253)
.+++..+.++|+.++-+. + ...++.+.+..+-.+.+.|.++.+.+.
T Consensus 226 ~l~l~LAv~~~~lga~L~FPglR~Arm~~dal~~~~~~~~~~~lLh~nfl~P~~~~llWi 285 (486)
T PF10268_consen 226 MLKLFLAVLCGLLGAFLTFPGLRLARMHWDALKMASDSPLLQLLLHLNFLLPLFILLLWI 285 (486)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444556666666553 1 222344567777778888887766554
No 101
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.68 E-value=2.5e+02 Score=22.04 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHhhhhhhhhh
Q psy3723 173 TIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLLLLLCVSLPLVFLG 218 (253)
Q Consensus 173 ~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG 218 (253)
+.+++++..+|........-..+||.-+..++.+--.+..|+.+++
T Consensus 11 ~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~~Aa~~ap~Ilms 56 (108)
T PF06210_consen 11 TVFLAVWILLNILAPPRPAFDPYPFILLNLVLSLEAAYQAPLILMS 56 (108)
T ss_pred HHHHHHHHHHHhhccccCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788899998777656677899888888888888888888775
No 102
>PRK09433 thiP thiamine transporter membrane protein; Reviewed
Probab=22.39 E-value=7.4e+02 Score=24.23 Aligned_cols=62 Identities=18% Similarity=0.127 Sum_probs=36.8
Q ss_pred CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHhhhhhhhhhhhhhc
Q psy3723 157 GREWKKAAFETAMLYPTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLLLLLCVSLPLVFLGAYFGY 223 (253)
Q Consensus 157 g~~W~~~~~lt~~~~P~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~g~ 223 (253)
++++.+........+|+++..+.... ..+.....+-.+...++..+....+|..+.-..-+.
T Consensus 357 ~~~~l~~~~~lp~~iP~iv~~~~~~~-----~~~~~~~~~~~~~~~lil~~~~~~~p~~~~~~~~~l 418 (525)
T PRK09433 357 AAQALELSGMLILAMPGIVLATGLFL-----LLRNTTDLPASALGIVILTNALMALPYALRVLEPPM 418 (525)
T ss_pred HHHHHHHHHhhhHhccHHHHHHHHHH-----HhccccchHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34555566666777888776553331 122222233445566777888889998886554443
No 103
>PF12669 P12: Virus attachment protein p12 family
Probab=22.27 E-value=89 Score=21.76 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q psy3723 39 VIFFLSGILTLIMIRTLRRDIA 60 (253)
Q Consensus 39 lv~lL~~~v~~IL~r~l~~D~~ 60 (253)
+.+++.++++.+++|.+.||.+
T Consensus 4 I~~Ii~~~~~~v~~r~~~k~~K 25 (58)
T PF12669_consen 4 IGIIILAAVAYVAIRKFIKDKK 25 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444455555566666654
No 104
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=22.18 E-value=2.7e+02 Score=24.97 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=14.4
Q ss_pred CCCCchHHHHHHHHHHHhh
Q psy3723 123 PSSRGALTSFAITCYVLFG 141 (253)
Q Consensus 123 ~~~~g~l~t~~i~~y~~~s 141 (253)
|++||...-.....+-+++
T Consensus 126 P~~RG~vvgilk~~~GLSa 144 (250)
T PF06813_consen 126 PRSRGTVVGILKGFFGLSA 144 (250)
T ss_pred ccccCceehhhhHHHHhHH
Confidence 6889988877777776663
No 105
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=22.11 E-value=8e+02 Score=24.53 Aligned_cols=67 Identities=19% Similarity=0.118 Sum_probs=46.2
Q ss_pred CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy3723 157 GREWKKAAFETAMLYPTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLLLLLCVSLPLVFLGAYFGYRK 225 (253)
Q Consensus 157 g~~W~~~~~lt~~~~P~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~g~k~ 225 (253)
+++|......-...+|+.++.+-.++=+-..... ..-|+.|+..+++-+.....|...-...-+.++
T Consensus 367 ~~~~~~~l~~l~~avPG~Vla~g~l~~~~~~~~~--~~~~~~t~~ilv~a~~~~~~p~a~r~~~a~l~q 433 (540)
T COG1178 367 LSRLLERLSMLPLAVPGVVLALGLLLLFRAPDGL--LYQPLYTLLILVLAYALRFLPFAVRSLRAALRQ 433 (540)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677666667788899998887665421111111 223445999999999999999998877777553
No 106
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=21.71 E-value=1.8e+02 Score=30.35 Aligned_cols=27 Identities=7% Similarity=-0.003 Sum_probs=13.6
Q ss_pred HHHHHhhhhhhhHHHHHHhhhcCcchh
Q psy3723 135 TCYVLFGVLAGYVSARLYTTFKGREWK 161 (253)
Q Consensus 135 ~~y~~~s~isGyvS~~~yk~f~g~~W~ 161 (253)
..+.++..++..+.+.+-..++.+++.
T Consensus 209 s~~~lG~iiG~li~G~LsDR~GRR~~l 235 (742)
T TIGR01299 209 LIVYLGMMVGAFFWGGLADKLGRKQCL 235 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 334444445555555555556655543
No 107
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=21.66 E-value=6.1e+02 Score=22.96 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=15.9
Q ss_pred HHHHHHHhhhhhhhHHHHHHhhhcCc
Q psy3723 133 AITCYVLFGVLAGYVSARLYTTFKGR 158 (253)
Q Consensus 133 ~i~~y~~~s~isGyvS~~~yk~f~g~ 158 (253)
....+.+++.++++..+++-+.++.+
T Consensus 260 ~~~~~~~~~~~~~~~~g~l~dr~g~~ 285 (406)
T PRK11551 260 VQIAFNIGGALGSLLIGALMDRLRPR 285 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34445566677777777776666443
No 108
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=21.15 E-value=1.5e+02 Score=29.98 Aligned_cols=45 Identities=16% Similarity=0.266 Sum_probs=23.2
Q ss_pred HhhhhhhhHHHHHHhhhcCc----chhhhhhhhhhhhhHHHHHHHHHHHH
Q psy3723 139 LFGVLAGYVSARLYTTFKGR----EWKKAAFETAMLYPTIVFSTCFLLNF 184 (253)
Q Consensus 139 ~~s~isGyvS~~~yk~f~g~----~W~~~~~lt~~~~P~~~~~i~~~~N~ 184 (253)
++++++||+.+.+.|.++.. ++.+ .+....+.|.+..++...+-+
T Consensus 317 lG~Ilag~lagyv~~~l~K~~~lP~~l~-~l~piliiPllt~li~~~l~~ 365 (563)
T PRK10712 317 IGGIIAGFLAGYVAKLISTKLKLPQSME-ALKPILIIPLISSLVVGLAMI 365 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHH-hcCceeehhHHHHHHHHHHHH
Confidence 35566777777666655433 2221 233345566665554444433
No 109
>TIGR02003 PTS-II-BC-unk1 PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter.
Probab=21.15 E-value=3.9e+02 Score=27.05 Aligned_cols=21 Identities=29% Similarity=0.719 Sum_probs=17.2
Q ss_pred HHhhhhhhhHHHHHHhhhcCc
Q psy3723 138 VLFGVLAGYVSARLYTTFKGR 158 (253)
Q Consensus 138 ~~~s~isGyvS~~~yk~f~g~ 158 (253)
++.++++|++.+.+|+.+..+
T Consensus 142 VfggIi~g~i~a~l~n~~~~~ 162 (548)
T TIGR02003 142 VFVGIIAGFLGATAYNKYYNY 162 (548)
T ss_pred hHHHHHHHHHHHHHHHHHhcc
Confidence 578999999999999877443
No 110
>COG1455 CelB Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]
Probab=20.97 E-value=2.4e+02 Score=27.64 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=33.1
Q ss_pred HhhhhhhhHHHHHHhhhcCcchhh---------hhhhhhhhhhHHHH-HHHHHHHHHHH
Q psy3723 139 LFGVLAGYVSARLYTTFKGREWKK---------AAFETAMLYPTIVF-STCFLLNFFIW 187 (253)
Q Consensus 139 ~~s~isGyvS~~~yk~f~g~~W~~---------~~~lt~~~~P~~~~-~i~~~~N~i~~ 187 (253)
+++++.|.+|+-+|+.+-.++|.- .+--...++|+.+. .++.++|.+.-
T Consensus 141 f~AiI~a~vs~eiy~~~~k~ni~IkmPe~VPpaVsksF~aLIP~~~~~~i~~~i~~~~~ 199 (432)
T COG1455 141 FTAIIIALVTVEIYTFLVKRNITIKMPESVPPAVSKSFEALIPGFIILSIFGLINILLN 199 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHcCeEEECCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999998766677742 22344567787744 46666666654
No 111
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=20.76 E-value=4.1e+02 Score=24.87 Aligned_cols=39 Identities=13% Similarity=0.223 Sum_probs=25.2
Q ss_pred CCCchHHHHHH-HHHHHhhhhhhhHHHHHHhhhcC---cchhh
Q psy3723 124 SSRGALTSFAI-TCYVLFGVLAGYVSARLYTTFKG---REWKK 162 (253)
Q Consensus 124 ~~~g~l~t~~i-~~y~~~s~isGyvS~~~yk~f~g---~~W~~ 162 (253)
+.||......- ..+.+++.++...+|.++..+++ -.|+.
T Consensus 340 ~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~ 382 (418)
T TIGR00889 340 HIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQT 382 (418)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHH
Confidence 44666655553 45667777888888888877665 34653
No 112
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.39 E-value=9.8e+02 Score=25.07 Aligned_cols=112 Identities=19% Similarity=0.242 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhhhhhHHHHHHhh-hcCcchhhhhhhhhhhh---------
Q psy3723 102 GVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSARLYTT-FKGREWKKAAFETAMLY--------- 171 (253)
Q Consensus 102 G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~~s~isGyvS~~~yk~-f~g~~W~~~~~lt~~~~--------- 171 (253)
|...+..+++.+++++=|.+....|-.++...+.+|... +-|.-.|.+++ -..++|-+..++|+..+
T Consensus 135 ~~s~l~~~l~~llv~~dn~~~t~sR~ILLDs~LlfF~~~---~~y~~~r~~~~~p~s~~w~~~Ll~tGisLGcaiS~Kwv 211 (699)
T COG1928 135 GYSRLVAALAGLLVAFDNSFVTESRFILLDSFLLFFIVA---AAYCFLRFHRQQPFSRRWLKWLLLTGISLGCAISVKWV 211 (699)
T ss_pred cchHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHH---HHHHHHHHHhhChhhHHHHHHHHHhcceeeeEEEeeeh
Confidence 566666677777777766665566777777777766554 23333444443 23456666666666432
Q ss_pred ---hHHHHHHHHHHHHHHHHhcCCCCcChHHHHHHHH--HHHHhhhhhhhhh
Q psy3723 172 ---PTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLL--LLLCVSLPLVFLG 218 (253)
Q Consensus 172 ---P~~~~~i~~~~N~i~~~~~Ss~aipf~ti~~l~~--lw~~v~~PL~~iG 218 (253)
-.-.+.+..+.+ .|.-=+.-++|...++...+ ++..+.+|.++-=
T Consensus 212 Glft~~~vgl~~v~~--lW~ll~dk~~s~~~~~kh~~~r~f~Li~iP~~iyl 261 (699)
T COG1928 212 GLFTTGVVGLLAVYE--LWSLLYDKSVSWKQIIKHWLARFFGLIIIPFDIYL 261 (699)
T ss_pred hHHHHHHHHHHHHHH--HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222 23333333488888886554 4555788876653
No 113
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=20.31 E-value=1.7e+02 Score=22.77 Aligned_cols=42 Identities=12% Similarity=0.250 Sum_probs=25.1
Q ss_pred hhhhHHHHHHHHHHHHHHH--------HhcCCCCcChHHHHHHHHHHHHh
Q psy3723 169 MLYPTIVFSTCFLLNFFIW--------GKRSSGAVPFSTMLSLLLLLLCV 210 (253)
Q Consensus 169 ~~~P~~~~~i~~~~N~i~~--------~~~Ss~aipf~ti~~l~~lw~~v 210 (253)
..+|+++.++.+++=...+ ..+..-..++.++..++.+|+++
T Consensus 49 ~il~~l~~l~g~I~~il~~~~~~~~~~~~~~~f~~i~~~i~ll~iiYi~~ 98 (104)
T PF12420_consen 49 FILPFLVPLIGLIFPILFSACVKIKIPDTNYIFFIIFITIILLVIIYIFI 98 (104)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 4455555555555444444 12445566777888888887765
No 114
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=20.21 E-value=2.3e+02 Score=21.20 Aligned_cols=22 Identities=14% Similarity=0.416 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHhccC
Q psy3723 101 SGVQIFLMTLVTLFVAMLGMLS 122 (253)
Q Consensus 101 ~G~Qll~~~~~~l~~~~~g~~~ 122 (253)
+|..++.+.++.++.+......
T Consensus 46 ~g~~~~~~~i~~li~~l~~~~~ 67 (97)
T PF12650_consen 46 MGKFMLIIGIILLIGGLLSFFQ 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5667776666666666654444
No 115
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=20.12 E-value=5.9e+02 Score=22.98 Aligned_cols=30 Identities=10% Similarity=0.117 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHhhhcCcch
Q psy3723 131 SFAITCYVLFGVLAGYVSARLYTTFKGREW 160 (253)
Q Consensus 131 t~~i~~y~~~s~isGyvS~~~yk~f~g~~W 160 (253)
......+.+.+.++....+++-+.++.++.
T Consensus 242 ~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~ 271 (392)
T PRK10473 242 AIIMALTAGVSMTVSFSTPFALGIFKPRTL 271 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 344455666677777778887777765543
No 116
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=20.03 E-value=4.8e+02 Score=23.60 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHhhhc
Q psy3723 130 TSFAITCYVLFGVLAGYVSARLYTTFK 156 (253)
Q Consensus 130 ~t~~i~~y~~~s~isGyvS~~~yk~f~ 156 (253)
.......+..+..++++.++++.+.++
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~l~~~~~ 271 (394)
T PRK11652 245 VSILFILPIPAAFFGAWFAGRPNKRFS 271 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777778888888877765
Done!