Query psy3723
Match_columns 253
No_of_seqs 114 out of 558
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 23:55:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 74.7 15 0.0005 32.3 9.2 26 130-155 290-315 (451)
2 3o7q_A L-fucose-proton symport 68.4 31 0.001 30.1 9.7 28 131-158 298-325 (438)
3 2knc_B Integrin beta-3; transm 66.0 1.7 6E-05 31.3 0.8 38 27-64 7-49 (79)
4 2knc_A Integrin alpha-IIB; tra 32.3 1.1E+02 0.0038 20.3 5.3 30 25-54 7-36 (54)
5 1j3e_A SEQA protein; protein-D 30.4 12 0.0004 29.0 0.2 11 238-248 71-81 (115)
6 4aps_A DI-OR tripeptide H+ sym 29.8 1.6E+02 0.0056 25.9 7.9 21 139-159 330-350 (491)
7 4ev6_A Magnesium transport pro 27.9 31 0.0011 30.6 2.6 30 197-226 275-304 (339)
8 3tlw_A GLR4197 protein, GLIC; 26.4 1.1E+02 0.0037 26.6 5.9 39 101-140 201-239 (321)
9 3sk7_A Protein SEQA; sequestra 25.9 16 0.00053 28.3 0.2 10 238-247 72-81 (116)
10 1lrr_A SEQA protein; protein-D 25.1 16 0.00056 28.7 0.2 10 238-247 87-96 (131)
11 2iub_A CORA, divalent cation t 23.9 26 0.00088 31.5 1.3 31 195-225 297-327 (363)
12 2pv9_C Proteinase-activated re 23.9 31 0.0011 19.5 1.1 14 237-250 7-20 (26)
13 4gc0_A D-xylose-proton symport 22.6 1E+02 0.0035 27.2 5.1 23 137-159 321-343 (491)
14 3rqw_A ELIC pentameric ligand 22.4 1.1E+02 0.0036 26.7 5.0 48 101-149 204-251 (322)
15 3d85_C IL-23 subunit, interleu 20.6 21 0.00073 28.5 0.0 18 230-247 121-138 (178)
16 4aq5_B Acetylcholine receptor 20.3 2.3E+02 0.0078 26.5 7.2 49 101-149 244-292 (493)
17 3qnq_A PTS system, cellobiose- 20.1 1.1E+02 0.0039 28.4 4.9 49 138-186 146-204 (442)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=74.69 E-value=15 Score=32.27 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHhhh
Q psy3723 130 TSFAITCYVLFGVLAGYVSARLYTTF 155 (253)
Q Consensus 130 ~t~~i~~y~~~s~isGyvS~~~yk~f 155 (253)
.......+.+++.+++..++++.+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~g~l~~~~ 315 (451)
T 1pw4_A 290 SSWAYFLYEYAGIPGTLLCGWMSDKV 315 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667778888888887776
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=68.41 E-value=31 Score=30.08 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHhhhcCc
Q psy3723 131 SFAITCYVLFGVLAGYVSARLYTTFKGR 158 (253)
Q Consensus 131 t~~i~~y~~~s~isGyvS~~~yk~f~g~ 158 (253)
......+.+++.++..+++++-++++.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~g~l~~r~~~~ 325 (438)
T 3o7q_A 298 ANYLTGTMVCFFIGRFTGTWLISRFAPH 325 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3444455666777777777777766544
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=66.03 E-value=1.7 Score=31.33 Aligned_cols=38 Identities=18% Similarity=0.445 Sum_probs=24.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhcC
Q psy3723 27 HIHWFSIVNSILVIFFLSGILTLIMIRTL-----RRDIARYNA 64 (253)
Q Consensus 27 ~ihW~si~Ns~~lv~lL~~~v~~IL~r~l-----~~D~~~y~~ 64 (253)
..+...|+-..+..++|.+++.+.+.|.+ ||+++||++
T Consensus 7 ~~n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEk 49 (79)
T 2knc_B 7 GPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEE 49 (79)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777666666777777777777654 466666654
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=32.33 E-value=1.1e+02 Score=20.25 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=16.4
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3723 25 DTHIHWFSIVNSILVIFFLSGILTLIMIRT 54 (253)
Q Consensus 25 ~~~ihW~si~Ns~~lv~lL~~~v~~IL~r~ 54 (253)
++.+-|--|+-|.+.-+++-+++..+|.|.
T Consensus 7 ~~~vp~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 7 ERAIPIWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334555555555555555555555666654
No 5
>1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} SCOP: d.228.1.1 PDB: 1iu3_C
Probab=30.37 E-value=12 Score=28.95 Aligned_cols=11 Identities=27% Similarity=0.884 Sum_probs=9.1
Q ss_pred CCCCCCCCCCC
Q psy3723 238 PRQVPEQLWYM 248 (253)
Q Consensus 238 pR~IP~qp~y~ 248 (253)
|||||+.|++-
T Consensus 71 PK~Ip~TpfWV 81 (115)
T 1j3e_A 71 PKHVPGTPYWV 81 (115)
T ss_dssp CEECTTSSCEE
T ss_pred CCcCCCCCeee
Confidence 79999999763
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=29.79 E-value=1.6e+02 Score=25.89 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=10.6
Q ss_pred HhhhhhhhHHHHHHhhhcCcc
Q psy3723 139 LFGVLAGYVSARLYTTFKGRE 159 (253)
Q Consensus 139 ~~s~isGyvS~~~yk~f~g~~ 159 (253)
+...+++.+.+++.+.++.++
T Consensus 330 ~~~~~~~~~~~~l~~r~~~r~ 350 (491)
T 4aps_A 330 LFIMLYTPFFAWLWTAWKKNQ 350 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 334444555566666665553
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=27.91 E-value=31 Score=30.57 Aligned_cols=30 Identities=7% Similarity=0.297 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhcccC
Q psy3723 197 FSTMLSLLLLLLCVSLPLVFLGAYFGYRKQ 226 (253)
Q Consensus 197 f~ti~~l~~lw~~v~~PL~~iG~~~g~k~~ 226 (253)
...++..+.++-.|-+|++++.|++|.+.+
T Consensus 275 ~N~~mk~LTiit~IflP~T~IaGiyGMNf~ 304 (339)
T 4ev6_A 275 MNQIMKILTMVTTIFAVPMWITGIYGMNFS 304 (339)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCcCC
Confidence 356778899999999999999999997753
No 8
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=26.44 E-value=1.1e+02 Score=26.60 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHh
Q psy3723 101 SGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLF 140 (253)
Q Consensus 101 ~G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~~ 140 (253)
.-+|+.+-.+++.+++.+++. |...|+-++..+......
T Consensus 201 y~~~~~iP~~li~~ls~~sF~-p~~~~~Rv~l~it~lL~~ 239 (321)
T 3tlw_A 201 YIPNIILPMLFILFISWTAFW-STSYEANVTLVVSTLIAH 239 (321)
T ss_dssp HHHHTHHHHHHHHHHHGGGGG-CCCHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHhheeec-cCCCCCcEEEEhhHHHHH
Confidence 346888888888888999999 877776666555544443
No 9
>3sk7_A Protein SEQA; sequestration, negative regulator, DNA replication initiatio binding, replication inhibitor; HET: FME; 1.50A {Vibrio cholerae}
Probab=25.88 E-value=16 Score=28.27 Aligned_cols=10 Identities=20% Similarity=0.903 Sum_probs=8.2
Q ss_pred CCCCCCCCCC
Q psy3723 238 PRQVPEQLWY 247 (253)
Q Consensus 238 pR~IP~qp~y 247 (253)
|||||..|+.
T Consensus 72 PK~Ip~TpfW 81 (116)
T 3sk7_A 72 PKAIPNTPFW 81 (116)
T ss_dssp CEECTTSSCE
T ss_pred CCcCCCCCee
Confidence 6999999864
No 10
>1lrr_A SEQA protein; protein-DNA complex, replication, methylated GATC, replication inhibitor/DNA complex; HET: 6MA; 2.65A {Escherichia coli} SCOP: d.228.1.1
Probab=25.07 E-value=16 Score=28.72 Aligned_cols=10 Identities=30% Similarity=0.919 Sum_probs=8.5
Q ss_pred CCCCCCCCCC
Q psy3723 238 PRQVPEQLWY 247 (253)
Q Consensus 238 pR~IP~qp~y 247 (253)
||+||..|++
T Consensus 87 PK~Ip~TpfW 96 (131)
T 1lrr_A 87 PKHVPGTPYW 96 (131)
T ss_dssp CEECTTSSCE
T ss_pred CCcCCCCCeE
Confidence 6999999976
No 11
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=23.95 E-value=26 Score=31.49 Aligned_cols=31 Identities=16% Similarity=0.452 Sum_probs=24.5
Q ss_pred cChHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy3723 195 VPFSTMLSLLLLLLCVSLPLVFLGAYFGYRK 225 (253)
Q Consensus 195 ipf~ti~~l~~lw~~v~~PL~~iG~~~g~k~ 225 (253)
.-...++..+.+|-.|-+|++++.|++|.+.
T Consensus 297 ~~~N~imk~LTiit~IflP~T~IaGiyGMNf 327 (363)
T 2iub_A 297 NKTNEVMKVLTIIATIFMPLTFIAGIYGMNF 327 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 3345788899999999999999999999774
No 12
>2pv9_C Proteinase-activated receptor 4; serine protease, hydrolase; HET: NAG; 3.50A {Mus musculus}
Probab=23.91 E-value=31 Score=19.48 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCC
Q psy3723 237 IPRQVPEQLWYMSP 250 (253)
Q Consensus 237 ipR~IP~qp~y~~~ 250 (253)
.||-+|-|||=.++
T Consensus 7 ~P~~~Pg~~~an~s 20 (26)
T 2pv9_C 7 NPRGYPGKFCANDS 20 (26)
T ss_dssp EECSCTTTTCSCCC
T ss_pred CCccCCCCccCCCc
Confidence 47899999986654
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=22.58 E-value=1e+02 Score=27.18 Aligned_cols=23 Identities=4% Similarity=0.002 Sum_probs=12.6
Q ss_pred HHHhhhhhhhHHHHHHhhhcCcc
Q psy3723 137 YVLFGVLAGYVSARLYTTFKGRE 159 (253)
Q Consensus 137 y~~~s~isGyvS~~~yk~f~g~~ 159 (253)
..+...++..+++.+-.+++.++
T Consensus 321 ~~~~~~~~~~~~~~l~dr~Grr~ 343 (491)
T 4gc0_A 321 VGVINLTFTVLAIMTVDKFGRKP 343 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCcc
Confidence 33445555566666656665543
No 14
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=22.40 E-value=1.1e+02 Score=26.68 Aligned_cols=48 Identities=13% Similarity=-0.101 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhhhhhHHH
Q psy3723 101 SGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSA 149 (253)
Q Consensus 101 ~G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~~s~isGyvS~ 149 (253)
.-+|+.+-.+++.+++.+++.-| ..|+-++..+........+...++.
T Consensus 204 y~~~~~iP~~li~~ls~~sF~lp-~~~~Rv~l~it~lL~~~~~~~~~~~ 251 (322)
T 3rqw_A 204 YLWSFILPLGLIIAASWSVFWLE-SFSERLQTSFTLMLTVVAYAFYTSN 251 (322)
T ss_dssp HHHHTHHHHHHHHHHHHGGGGCS-SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHHHhccC-CCCCcEEEEEehHHHHHHHHHHHhh
Confidence 35788888888899999999998 7777776666555544444443443
No 15
>3d85_C IL-23 subunit, interleukin-23 subunit P19; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} PDB: 3d87_A* 3qwr_B* 3duh_C*
Probab=20.58 E-value=21 Score=28.54 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=7.2
Q ss_pred CCcccCCCCCCCCCCCCC
Q psy3723 230 LPVRTNQIPRQVPEQLWY 247 (253)
Q Consensus 230 ~P~~~n~ipR~IP~qp~y 247 (253)
..-.+.|+||..|.|||-
T Consensus 121 hhwet~q~Ps~~psq~wq 138 (178)
T 3d85_C 121 HHWETQQIPSLSPSQPWQ 138 (178)
T ss_dssp ----------CCCCCHHH
T ss_pred CCcccccCCCCCCcchHH
Confidence 455788999999999993
No 16
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=20.32 E-value=2.3e+02 Score=26.50 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhhhhhHHH
Q psy3723 101 SGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSA 149 (253)
Q Consensus 101 ~G~Qll~~~~~~l~~~~~g~~~~~~~g~l~t~~i~~y~~~s~isGyvS~ 149 (253)
.-+|+.+-.+++.+++.+++.-|...|.-++..+........+...++.
T Consensus 244 Y~i~l~iP~~liv~Ls~lsF~Lp~~s~eRvsLgiT~LLt~tvfl~~v~~ 292 (493)
T 4aq5_B 244 YIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLAD 292 (493)
T ss_dssp STTTTHHHHHHHHHHHHHHHHSTTTCGGGGTHHHHHHHHHHHHHHHHHH
T ss_pred eeehhhhhHHHHHHHHHhEEecCCCCCceEEehHHHHHHHHHHHHHHHh
Confidence 3467888888888889888888766676665555554444444444444
No 17
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein, transporter, enzyme IIC, phosphoenolpyruva phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A {Bacillus cereus}
Probab=20.05 E-value=1.1e+02 Score=28.35 Aligned_cols=49 Identities=12% Similarity=0.337 Sum_probs=31.9
Q ss_pred HHhhhhhhhHHHHHHhhhcCcchh-h--------hhhhhhhhhhHHHHH-HHHHHHHHH
Q psy3723 138 VLFGVLAGYVSARLYTTFKGREWK-K--------AAFETAMLYPTIVFS-TCFLLNFFI 186 (253)
Q Consensus 138 ~~~s~isGyvS~~~yk~f~g~~W~-~--------~~~lt~~~~P~~~~~-i~~~~N~i~ 186 (253)
.+++++.|++++.+|+.+..++|+ | ..--...++|+.+.+ ++.++|.+.
T Consensus 146 lF~AIIvglls~~Iy~~~~k~~~~IkmP~~VP~~V~~sF~~liP~~i~~~~~~~i~~~~ 204 (442)
T 3qnq_A 146 LFVAMIIAIISTEIYRFLVQKKMIIKMPETVPPAVTRSFAALIPGFIVVTVVWIIRLIF 204 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCeeeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999988777773 2 112334677876544 555555543
Done!