RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3723
(253 letters)
>gnl|CDD|217309 pfam02990, EMP70, Endomembrane protein 70.
Length = 518
Score = 357 bits (919), Expect = e-122
Identities = 148/251 (58%), Positives = 192/251 (76%), Gaps = 3/251 (1%)
Query: 4 VEWRKSDIPWASRWDIYL-SMSDTHIHWFSIVNSILVIFFLSGILTLIMIRTLRRDIARY 62
V+W++SD+ WASRWD YL +M D IHWFSI+NS++++ FLSGI+++I++RTLRRDIARY
Sbjct: 170 VKWKESDVKWASRWDKYLDAMHDLQIHWFSIINSLVIVLFLSGIVSMILMRTLRRDIARY 229
Query: 63 NAGDEGIDEVLEESGWKLVHGDVFRPPRHPRLFVSIIGSGVQIFLMTLVTLFVAMLGMLS 122
N DE ++ EESGWKLVHGDVFRPPR+P L +++GSGVQ+ LM + T+ A LG LS
Sbjct: 230 NELDE-DEDAQEESGWKLVHGDVFRPPRNPMLLSALVGSGVQLLLMVIGTIVFACLGFLS 288
Query: 123 PSSRGALTSFAITCYVLFGVLAGYVSARLYTTFKGREWKKAAFETAMLYPTIVFSTCFLL 182
PS+RG+L + AI Y L G +AGYVSARLY TFKG++WK+ TA L+P IVF F+L
Sbjct: 289 PSNRGSLLTAAIVLYALTGFVAGYVSARLYKTFKGKKWKRNLILTAFLFPGIVFVIFFVL 348
Query: 183 NFFIWGKRSSGAVPFSTMLSLLLLLLCVSLPLVFLGAYFGYRKQPI-QLPVRTNQIPRQV 241
NF +W SSGA+PF T+++LLLL VS+PL FLG G+R + Q PVRTNQIPRQ+
Sbjct: 349 NFVLWAYGSSGAIPFGTIVALLLLWFLVSVPLTFLGGIVGFRNRAGEQHPVRTNQIPRQI 408
Query: 242 PEQLWYMSPVV 252
PEQ WY+SP+
Sbjct: 409 PEQPWYLSPLP 419
>gnl|CDD|216831 pfam01988, VIT1, VIT family. This family includes the vacuolar
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron
transporter VIT1.
Length = 209
Score = 29.6 bits (67), Expect = 1.1
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 97 SIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSARLYTTFK 156
S + + + L ++ + +L L + S A+T LF L GYV AR
Sbjct: 128 SPLKAALASGLSFILGGLIPLLPYLLAPPSALIVSIAVTLLALF--LLGYVKAR----LS 181
Query: 157 GREWKKAAFETAML 170
GR ++A ++
Sbjct: 182 GRSPLRSALRMVVI 195
>gnl|CDD|226888 COG4485, COG4485, Predicted membrane protein [Function unknown].
Length = 858
Score = 30.1 bits (68), Expect = 1.1
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
Query: 21 LSMSDTHIHWFSIVNSILVIFFLSGILTLIMIRTLRRDIARYNAGDEGIDEVLEESGWKL 80
L D W IV V +G+ + +M+ D+ + D E+ W
Sbjct: 214 LRERDEKKRWIDIV-DFTVSSICAGLASALMVLPTVFDLFTHGEALSENDRKQTENSWLF 272
Query: 81 -VHGDVFRPPRHPRLFVSIIGSGVQIF-LMTLVTLF 114
+ F P F +I V IF L +V LF
Sbjct: 273 DIPAKNFIGPYDTTKFNAIPMIYVGIFPLALIVLLF 308
>gnl|CDD|223650 COG0577, SalY, ABC-type antimicrobial peptide transport system,
permease component [Defense mechanisms].
Length = 419
Score = 28.5 bits (63), Expect = 3.3
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 94 LFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSAR 150
L ++G G+ + L L+ + L L L A+ +L GV+AG + AR
Sbjct: 349 LLGILLGLGLSLLLALLLIASLFFLLALPILLSPLLILLALIVALLVGVIAGLLPAR 405
>gnl|CDD|215593 PLN03128, PLN03128, DNA topoisomerase 2; Provisional.
Length = 1135
Score = 28.5 bits (64), Expect = 4.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 15 SRWDIYLSMSDTHIHWFSIVNSI 37
RW++ +S+SD S VNSI
Sbjct: 267 DRWEVCVSLSDGSFQQVSFVNSI 289
>gnl|CDD|218842 pfam05987, DUF898, Bacterial protein of unknown function (DUF898).
This family consists of several bacterial proteins of
unknown function. Some of the family members are
described as putative membrane proteins.
Length = 339
Score = 27.9 bits (63), Expect = 4.6
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 11/126 (8%)
Query: 30 WFSIVNSILVIFFLSGILTLIMIRTLRRDIA-RYNAGDEGIDEVLEESGWKLVHGDVFRP 88
W +++ +L + L G+L L+R + G ++ GD ++
Sbjct: 134 WVALLWPLLTVLTL-GLLAPWATARLKRYLVNNSRFGTLRFS-------FEATAGDFYKA 185
Query: 89 PRHPRL--FVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGY 146
L + + G+ + L A LG ++ GA+ + +V + V A Y
Sbjct: 186 YLLALLVALLFLAVLGLLLALAAGALAGAAPLGGFGLAAVGAIILGYLVLFVGYLVAAAY 245
Query: 147 VSARLY 152
ARL
Sbjct: 246 YRARLR 251
>gnl|CDD|220572 pfam10104, Brr6_like_C_C, Di-sulfide bridge nucleocytoplasmic
transport domain. Brr6_like_C_C is the highly
conserved C-terminal region of a group of proteins
found in fungi. It carries four highly conserved
cysteine residues. It is suggested that members of the
family interact with each other via di-sulfide bridges
to form a complex which is involved in
nucleocytoplasmic transport. Brr6 in yeast is an
essential integral membrane protein of the NE-ER, wit
two predicted transmembrane domains, and is a dosage
suppressor of Apq12, pfam12716.
Length = 135
Score = 27.2 bits (61), Expect = 4.7
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 33 IVNSILVIFFLSGILTLIMIRTLRRDIARYNAGDEGIDEVLEES 76
I N ILV L L I+T+R+DI + +E E+L E
Sbjct: 8 IFNIILVSIILY--LVFSFIKTIRKDIQ--HKIEEQKLEILIEI 47
>gnl|CDD|235569 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 359
Score = 28.2 bits (64), Expect = 4.8
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 190 RSSGAVPFSTMLSLLLLLLCVSLPLVFLGAYFGYR 224
R G VP S L+ LL + L F G R
Sbjct: 22 REKGQVPRSRELNTAASLLAGLVVLWFFGPSLARR 56
>gnl|CDD|216063 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus.
Members of this families are involved in Na+/K+, H+/K+,
Ca++ and Mg++ transport. This family represents 5
transmembrane helices.
Length = 175
Score = 27.2 bits (61), Expect = 6.0
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 16/139 (11%)
Query: 87 RPPRHP-------RLFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVL 139
RPPR P +L I+ G+ I ++TL+ F+ +LG S A T A VL
Sbjct: 36 RPPRKPKEPLFSRKLLRRILLQGLLIAIVTLLVFFLGLLGFGISESGLAQT-MAFNTLVL 94
Query: 140 FGVLAGYVSARLYTTFKGREWKKAAFETAMLYPTIVFSTCFLLNFFIWGKRSSGAVPFST 199
+ +AR + + +K F +L ++ S L F T
Sbjct: 95 SQLFNAL-NAR---SLRRSLFKIGLFSNKLLLLAVLLSLLLQLLIIYVP---GLQAVFGT 147
Query: 200 M-LSLLLLLLCVSLPLVFL 217
LSL L+ + L LV L
Sbjct: 148 TPLSLEQWLIVLGLALVVL 166
>gnl|CDD|131967 TIGR02921, PEP_integral, PEP-CTERM family integral membrane
protein. Members of this protein family, found in three
different species so far, have a PEP-CTERM sequence at
the carboxyl-terminus (see model TIGR02595), but are
unusual among PEP-CTERM proteins in having multiple
predicted transmembrane segments. The function is
unknown. It is proposed that a member of the EpsH
family, to be designated exosortase (see TIGR02602),
recognizes and cleaves PEP-CTERM proteins in a manner
analogous to the cleavage of LPXTG proteins by sortase
(see Haft, et al., 2006).
Length = 952
Score = 27.7 bits (61), Expect = 7.3
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 87 RPPRHPRLFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGY 146
P +LF G IF + L+ LF ++ L+P+S L + I L G
Sbjct: 74 NPTALIKLFY---GVEAPIFFICLLRLF--LIRELNPASSHILINIGIAIAAFAACLFGG 128
Query: 147 VSARLYTTFK-GREWKKAAFETAMLYPTIVFSTCFLLNFFI 186
V++R FK G +W + ML +++ L F I
Sbjct: 129 VASR----FKIGLQWLQLLAAMLMLL-FGIYAAALLAFFAI 164
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 27.3 bits (61), Expect = 9.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 16 RWDIYLSMSDTHIHWFSIVNSI 37
RW++ +S+SD S VNSI
Sbjct: 277 RWEVVVSLSDGQFQQVSFVNSI 298
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.143 0.457
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,457,156
Number of extensions: 1319108
Number of successful extensions: 3162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3127
Number of HSP's successfully gapped: 201
Length of query: 253
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 158
Effective length of database: 6,723,972
Effective search space: 1062387576
Effective search space used: 1062387576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.1 bits)