RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3723
(253 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 4e-04
Identities = 38/246 (15%), Positives = 80/246 (32%), Gaps = 74/246 (30%)
Query: 57 RDIARYNAGDEGIDEVLEESGWKLVHGDVFRPPRHPRLFVSIIGSGVQI--FLMT----- 109
RD+ Y + ++++ S + + + ++F G+ I +L
Sbjct: 174 RDL--YQTYHVLVGDLIKFSA-ETLSELIRTTLDAEKVF----TQGLNILEWLENPSNTP 226
Query: 110 ----LVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSARLYTTFKGREWKKAAF 165
L+++ ++ P + A YV+ L G+ L + KG A
Sbjct: 227 DKDYLLSIPISC-----PLI--GVIQLA--HYVVTAKLLGFTPGELRSYLKG-----ATG 272
Query: 166 ETAMLYPTIVFSTC-----FLLN--------FFIWGKRSSGAVPFSTMLSLLL------- 205
+ L + + F ++ FFI G R A P +++ +L
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI-GVRCYEAYPNTSLPPSILEDSLENN 331
Query: 206 ------LLLCVSLPLVFLGAYFGYRKQPIQLPVRTNQI-------PRQV-----PEQLWY 247
+L +L + Y LP Q+ + + P+ L+
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNS--HLP-AGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 248 MSPVVR 253
++ +R
Sbjct: 389 LNLTLR 394
Score = 38.5 bits (89), Expect = 0.002
Identities = 35/246 (14%), Positives = 66/246 (26%), Gaps = 96/246 (39%)
Query: 1 MGFVEWRKSDIPWASRWDI-----------YLSMSDTHIHWFSIVNSILVIFFLSGILTL 49
+G+V + YL +D IH ++ L
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND--IH--ALAAK------LLQENDT 114
Query: 50 IMIRTLRRDIAR--YNAGDEGIDEVLEESGWKLVHGDVFRPPRHPRLFVSIIGSGVQIFL 107
+++ +++ + A +++ F + LF ++ Q+
Sbjct: 115 TLVK--TKELIKNYITA--------------RIMAKRPFDKKSNSALFRAVGEGNAQL-- 156
Query: 108 MTLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAG------YVS--ARLYTTFKG-- 157
+FG G Y LY T+
Sbjct: 157 -----------------------------VAIFG---GQGNTDDYFEELRDLYQTYHVLV 184
Query: 158 REWKKAAFETAMLYP----TIVFSTCFL--LNFFIWGKRSSGAVPFSTMLSLLLLLLCVS 211
+ K + ET L T+ F LN W + S +LS+ +S
Sbjct: 185 GDLIKFSAET--LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP-----IS 237
Query: 212 LPLVFL 217
PL+ +
Sbjct: 238 CPLIGV 243
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 35.7 bits (83), Expect = 0.013
Identities = 26/151 (17%), Positives = 43/151 (28%), Gaps = 26/151 (17%)
Query: 87 RPPRHPR-------LFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVL 139
RPPR P+ LF + G + T+ A + +T +T ++
Sbjct: 820 RPPRSPKEPLISGWLFFRYMAIGG---YVGAATVGAAAWWFMYAEDGPGVTYHQLTHFMQ 876
Query: 140 FGVLAGYVSARLYTTFKGREWKKAAFETAMLYPTIVFS-TCFLLNF-------FIWGKRS 191
+ F+ E A +V C LN
Sbjct: 877 CTEDHPHFEGLDCEIFEAPEPMTMALS------VLVTIEMCNALNSLSENQSLMRMPPWV 930
Query: 192 SGAVPFSTMLSLLLLLLCVSLPLVFLGAYFG 222
+ + S LS+ L L + + L F
Sbjct: 931 NIWLLGSICLSMSLHFLILYVD--PLPMIFK 959
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 34.2 bits (79), Expect = 0.042
Identities = 18/153 (11%), Positives = 38/153 (24%), Gaps = 23/153 (15%)
Query: 87 RPPRHPR---------LFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCY 137
PR+P+ S G + + M L +
Sbjct: 844 LRPRNPKRDRLVNEPLAAYSYFQIGA---IQSFAGFTDYFTAMAQEGWFPLLCVGLRPQW 900
Query: 138 VLFGVLAGYVSARLYTTFKGREWKKAAFETAMLYPTIVFSTCF-LLN-------FFIWGK 189
+ S TF R +++ T + + +I +L F G
Sbjct: 901 ENHHLQDLQDSYGQEWTFGQRLYQQYTCYT-VFFISIEMCQIADVLIRKTRRLSAFQQGF 959
Query: 190 RSSGAVPFSTMLSLLLLLLCVSLPLVFLGAYFG 222
+ + + + + + P + F
Sbjct: 960 FRNRILVIAIVFQVCIGCFLCYCP--GMPNIFN 990
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.22
Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 56/193 (29%)
Query: 50 IMIRTLRRDIARYNAGDEGIDEVLEESGWKLVHG---DVFR----------PPR----HP 92
I++ T + + + + L+ L + P +P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 93 RLFVSIIGSGVQIFLMT-----------LVTLFVAMLGMLSPSS-RGALTSFAITCYVLF 140
+SII ++ L T L T+ + L +L P+ R ++ F
Sbjct: 328 -RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-----F 381
Query: 141 --GVLAGYVSARLYTTFKGREWKKAAFETAMLYPTIV--FSTCFLLNFFIWGKRSSGAVP 196
++ L + W M+ +V L+ K S+
Sbjct: 382 PPSA---HIPTILLSLI----WFDVIKSDVMV---VVNKLHKYSLVE--KQPKEST---- 425
Query: 197 FSTMLSLLLLLLC 209
++ S+ L L
Sbjct: 426 -ISIPSIYLELKV 437
Score = 27.1 bits (59), Expect = 6.5
Identities = 32/225 (14%), Positives = 58/225 (25%), Gaps = 75/225 (33%)
Query: 21 LSMSDTHIHWFSIVNSILVIFFLSGILTLIMIRTLRRDIAR-YNAGDEGIDEV-LEESGW 78
D I W ++ N S L M++ L I + + + + L
Sbjct: 177 QCKMDFKIFWLNLKNCN------SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 79 KLVHGDVFRPPRHPR-LFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCY 137
+ + + + L ++ VQ + A +F ++C
Sbjct: 231 QAELRRLLKSKPYENCL---LVLLNVQ--------------------NAKAWNAFNLSCK 267
Query: 138 VLFGVLAGYVSARLYTTFKGREWKKAAFETAMLYPTIVFSTCFLLNFFIWGKRSSGAVPF 197
+L TT R + F +A I L+
Sbjct: 268 ILL------------TT---RFKQVTDFLSAATTTHIS------LDHHSMT--------L 298
Query: 198 STMLSLLLLLLCVSLPLVFLGAYFGYRKQPIQLPVRTNQI-PRQV 241
+ LLL + P LP PR++
Sbjct: 299 TPDEVKSLLLKYLDCR-------------PQDLPREVLTTNPRRL 330
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 31.1 bits (71), Expect = 0.42
Identities = 20/151 (13%), Positives = 36/151 (23%), Gaps = 20/151 (13%)
Query: 87 RPPRHPRLFVSIIGSGVQI------FLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLF 140
R PR+P+ + + + + L F + + + G L I V +
Sbjct: 839 RQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFSYFVIL---AENGFLPMDLIGKRVRW 895
Query: 141 GVLAGYVSARLYTTFKGREWKKAAFETA--MLYPTIVFSTCFLL-------NFFIWGKRS 191
+ E +K T + +IV L N
Sbjct: 896 DDRWISDVEDSFGQQWTYEQRKIVEFTCHTSFFISIVVVQWADLIICKTRRNSIFQQGMK 955
Query: 192 SGAVPFSTMLSLLLLLLCVSLPLVFLGAYFG 222
+ + F L P
Sbjct: 956 NKILIFGLFEETALAAFLSYCP--GTDVALR 984
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase,
membrane pyrophosphotase, ION pump; 2.60A {Thermotoga
maritima} PDB: 4av6_A
Length = 735
Score = 30.5 bits (69), Expect = 0.56
Identities = 33/214 (15%), Positives = 57/214 (26%), Gaps = 41/214 (19%)
Query: 35 NSILVIFFLSGILTLIMIRTLRRDIARYNAGDEGIDEVLEESGWKLVHGDVFRPPRHPRL 94
+ + +FFL ++ L + R G E + E+
Sbjct: 10 HYVAALFFLIPLVALGFAAANFAAVVRKPEGTERMKEI---------------------- 47
Query: 95 FVSIIGSGVQIFLM---TLVTLFVAMLGMLSPSSRGALTSFAITCYVLFGVLAGYVSARL 151
S I SG FL + ++ +L T A + AG V ++
Sbjct: 48 -SSYIRSGADSFLAHETKAIFKVAIVIAILLMIFTTWQTGVAFLLGAVMSASAGIVGMKM 106
Query: 152 YTTFKGREWKKAAFETAMLYPTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSLLLLLLCVS 211
T R +AA T + P + G+V + LL +
Sbjct: 107 ATRANVRV-AEAARTTKKIGPA--LKVAY----------QGGSV--MGLSVGGFALLGLV 151
Query: 212 LPLVFLGAYFGYRKQPIQLPVRTNQIPRQVPEQL 245
L + G + G +
Sbjct: 152 LVYLIFGKWMGQVDNLNIYTNWLGINFVPFAMTV 185
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase
maturation, ATPase, transferase; 1.55A {Thermococcus
kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Length = 338
Score = 27.6 bits (62), Expect = 3.5
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 67 EGIDEVLEESGWKLVHGDVFRPPRHPRLFVSIIGSGV 103
+ +DE E +V GD +FV G G+
Sbjct: 115 KSMDETAREVPVPIVTGDTKVVEDKIEMFVITAGIGI 151
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA
binding domain, poly(A polymerase, mitochondria,
transferase; 3.10A {Homo sapiens}
Length = 464
Score = 26.7 bits (58), Expect = 7.9
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 107 LMTLVTLFVAMLGMLSPSSRGALTSFAITCYVLF 140
L+ V + + S +T+F++T V+F
Sbjct: 301 LVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIF 334
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.143 0.457
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,955,182
Number of extensions: 228938
Number of successful extensions: 650
Number of sequences better than 10.0: 1
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 34
Length of query: 253
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 162
Effective length of database: 4,160,982
Effective search space: 674079084
Effective search space used: 674079084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.5 bits)