RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3723
         (253 letters)



>d2z1ea1 d.79.4.1 (A:43-155) Hydrogenase expression/formation
           protein HypE {Thermococcus kodakaraensis [TaxId:
           311400]}
          Length = 113

 Score = 31.9 bits (72), Expect = 0.020
 Identities = 17/70 (24%), Positives = 25/70 (35%)

Query: 34  VNSILVIFFLSGILTLIMIRTLRRDIARYNAGDEGIDEVLEESGWKLVHGDVFRPPRHPR 93
           VN + V+      L   MI     D+       + +DE   E    +V GD         
Sbjct: 40  VNDLAVMGAEPIALANSMIIGEGLDMEVLKRVLKSMDETAREVPVPIVTGDTKVVEDKIE 99

Query: 94  LFVSIIGSGV 103
           +FV   G G+
Sbjct: 100 MFVITAGIGI 109


>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p)
          {Deinococcus radiodurans [TaxId: 1299]}
          Length = 66

 Score = 25.4 bits (56), Expect = 1.7
 Identities = 5/10 (50%), Positives = 9/10 (90%)

Query: 52 IRTLRRDIAR 61
          +R LRR++A+
Sbjct: 43 VRQLRREVAQ 52


>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 65

 Score = 25.3 bits (56), Expect = 1.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 52 IRTLRRDIAR 61
          I+ LR+ IAR
Sbjct: 46 IKELRKAIAR 55


>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p)
          {Escherichia coli [TaxId: 562]}
          Length = 60

 Score = 25.3 bits (56), Expect = 1.9
 Identities = 5/10 (50%), Positives = 9/10 (90%)

Query: 52 IRTLRRDIAR 61
          ++ +RRD+AR
Sbjct: 43 LKQVRRDVAR 52


>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga
          maritima [TaxId: 2336]}
          Length = 66

 Score = 25.3 bits (56), Expect = 2.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 52 IRTLRRDIAR 61
          I+  +RDIAR
Sbjct: 43 IKLTKRDIAR 52


>d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of
          dissimilatory sulfite reductase {Desulfovibrio vulgaris
          [TaxId: 881]}
          Length = 103

 Score = 25.4 bits (56), Expect = 3.2
 Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 1/26 (3%)

Query: 57 RDIARYNAGDEGIDEVLEESGWKLVH 82
           +   Y    EGI + +     K++ 
Sbjct: 25 PEWVEYVKESEGISD-ISPDHQKIID 49


>d2b4wa1 b.67.2.5 (A:2-311) Hypothetical protein LmjF10.1260
           {Leishmania major [TaxId: 5664]}
          Length = 310

 Score = 26.3 bits (58), Expect = 3.3
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 17  WDIYLSMSDTHIHWFSI 33
            D+Y  + D+H    +I
Sbjct: 276 VDLYSGVGDSHEGRITI 292


>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
           transmembrane domain M {Rabbit (Oryctolagus cuniculus)
           [TaxId: 9986]}
          Length = 472

 Score = 25.8 bits (56), Expect = 6.8
 Identities = 21/145 (14%), Positives = 38/145 (26%), Gaps = 14/145 (9%)

Query: 87  RPPRHP-------RLFVSIIGSGVQIFLMTLVTLFVAMLGMLSPSSRGALTSFAITCYVL 139
           RPPR P        LF   +  G  +   T+       +          +T   +T ++ 
Sbjct: 297 RPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAEDGPG---VTYHQLTHFMQ 353

Query: 140 FGVLAGYVSARLYTTFKGREWKKAAFETAMLYPTIVFSTC--FLLNFFIWGKRSSGAVPF 197
                 +        F+  E    A    +               +        +  +  
Sbjct: 354 CTEDHPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLG 413

Query: 198 STMLSLLLLLLCVSLPLVFLGAYFG 222
           S  LS+ L  L + +    L   F 
Sbjct: 414 SICLSMSLHFLILYVD--PLPMIFK 436


>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia
           coli [TaxId: 562]}
          Length = 119

 Score = 24.6 bits (54), Expect = 7.6
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 10/55 (18%)

Query: 167 TAMLYPTIVFSTCFLLNFFIWGKRSSGAVPFSTMLSL-------LLLLLCVSLPL 214
           +A++ P ++     LL   ++      A+ +  +L+        + L L + LPL
Sbjct: 25  SAIIAPVMILLVGILLPLGLFP---GDALSYERVLAFAQSFIGRVFLFLMIVLPL 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.143    0.457 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 967,706
Number of extensions: 42532
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 14
Length of query: 253
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,268,006
Effective search space: 215561020
Effective search space used: 215561020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (23.8 bits)