Query psy3725
Match_columns 760
No_of_seqs 377 out of 1380
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 23:57:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0612|consensus 100.0 3.8E-56 8.2E-61 517.9 -20.7 595 5-711 700-1314(1317)
2 COG5422 ROM1 RhoGEF, Guanine n 100.0 2.5E-44 5.5E-49 405.8 20.1 309 372-690 808-1143(1175)
3 smart00036 CNH Domain found in 100.0 7.5E-43 1.6E-47 376.1 29.5 263 424-699 2-301 (302)
4 PF00780 CNH: CNH domain; Int 100.0 3.4E-41 7.3E-46 356.1 30.0 253 427-691 2-274 (275)
5 cd01243 PH_MRCK MRCK (myotonic 100.0 4.1E-39 8.9E-44 293.5 13.4 122 280-401 1-122 (122)
6 KOG4305|consensus 100.0 6.2E-34 1.3E-38 334.8 17.9 312 374-698 662-1012(1029)
7 KOG0976|consensus 100.0 3.2E-34 6.8E-39 320.5 -0.7 450 206-672 585-1108(1265)
8 cd01242 PH_ROK Rok (Rho- assoc 100.0 5.4E-29 1.2E-33 224.2 11.4 104 283-395 2-107 (112)
9 KOG0976|consensus 99.9 2.5E-25 5.4E-30 249.7 3.3 452 208-698 738-1227(1265)
10 KOG2063|consensus 99.8 6.5E-18 1.4E-22 199.8 15.4 253 427-700 21-299 (877)
11 PF08826 DMPK_coil: DMPK coile 99.7 7.2E-18 1.6E-22 137.9 9.3 60 78-137 1-60 (61)
12 KOG0696|consensus 99.6 3.7E-16 8.1E-21 168.2 4.1 117 204-324 39-194 (683)
13 KOG0576|consensus 99.5 4.1E-14 9E-19 160.2 8.5 273 415-698 484-806 (829)
14 PF00130 C1_1: Phorbol esters/ 99.2 2.5E-11 5.4E-16 97.4 4.9 52 211-262 1-52 (53)
15 KOG4236|consensus 99.1 6.2E-11 1.4E-15 131.5 7.6 56 208-263 265-320 (888)
16 cd00029 C1 Protein kinase C co 98.9 6.1E-10 1.3E-14 87.8 2.8 50 211-260 1-50 (50)
17 KOG1011|consensus 98.9 2.2E-10 4.7E-15 128.3 -1.5 144 207-351 169-358 (1283)
18 smart00109 C1 Protein kinase C 98.8 3.3E-09 7.2E-14 83.0 2.1 49 211-260 1-49 (49)
19 KOG4236|consensus 98.7 2.8E-09 6.1E-14 118.6 1.1 56 207-262 142-197 (888)
20 KOG0696|consensus 98.7 2.6E-09 5.7E-14 116.1 0.1 58 208-265 108-165 (683)
21 KOG0695|consensus 98.7 3E-09 6.5E-14 113.0 0.2 57 207-263 127-183 (593)
22 KOG0587|consensus 98.6 2.8E-09 6E-14 124.9 -2.3 253 422-689 640-918 (953)
23 cd01251 PH_centaurin_alpha Cen 98.5 1E-06 2.2E-11 80.7 11.2 97 284-399 2-101 (103)
24 PF00169 PH: PH domain; Inter 98.5 4.1E-06 8.9E-11 74.0 13.8 101 283-398 3-103 (104)
25 cd01266 PH_Gab Gab (Grb2-assoc 98.4 2.3E-06 4.9E-11 79.0 10.8 98 283-397 1-107 (108)
26 cd01246 PH_oxysterol_bp Oxyste 98.4 2.3E-06 4.9E-11 75.2 10.1 91 283-397 1-91 (91)
27 KOG0694|consensus 98.4 6.2E-08 1.3E-12 111.6 0.1 61 204-264 152-212 (694)
28 cd01247 PH_GPBP Goodpasture an 98.4 2.8E-06 6E-11 76.1 10.7 89 283-395 1-89 (91)
29 cd01235 PH_SETbf Set binding f 98.3 6.4E-06 1.4E-10 74.3 11.8 98 283-397 1-100 (101)
30 cd01265 PH_PARIS-1 PARIS-1 ple 98.3 6.4E-06 1.4E-10 74.3 10.2 90 284-397 2-93 (95)
31 cd01260 PH_CNK Connector enhan 98.3 7.5E-06 1.6E-10 73.5 10.5 92 283-396 2-95 (96)
32 cd01264 PH_melted Melted pleck 98.2 1.2E-05 2.6E-10 73.4 11.3 96 283-397 2-100 (101)
33 cd01238 PH_Tec Tec pleckstrin 98.2 1.3E-05 2.7E-10 73.9 10.9 87 297-396 19-105 (106)
34 cd01236 PH_outspread Outspread 98.2 1.1E-05 2.4E-10 74.1 10.3 81 296-395 21-101 (104)
35 cd01233 Unc104 Unc-104 pleckst 98.2 1.8E-05 3.8E-10 72.0 11.3 94 283-397 4-97 (100)
36 cd01250 PH_centaurin Centaurin 98.2 1.8E-05 3.8E-10 69.9 10.9 93 283-396 1-93 (94)
37 KOG1090|consensus 98.1 1.8E-06 4E-11 101.3 4.8 139 236-397 1559-1730(1732)
38 cd00821 PH Pleckstrin homology 98.1 2E-05 4.4E-10 67.6 9.8 94 284-396 2-95 (96)
39 cd01263 PH_anillin Anillin Ple 98.1 1.9E-05 4.2E-10 74.5 9.7 104 283-396 3-121 (122)
40 cd01252 PH_cytohesin Cytohesin 98.0 6.3E-05 1.4E-09 71.1 12.6 99 283-399 2-114 (125)
41 smart00233 PH Pleckstrin homol 98.0 0.00014 3.1E-09 62.9 12.9 100 282-398 2-101 (102)
42 KOG4239|consensus 98.0 7E-07 1.5E-11 94.0 -2.2 57 208-264 49-105 (348)
43 KOG0694|consensus 97.8 3.7E-06 8E-11 97.3 0.2 63 206-268 226-288 (694)
44 cd01244 PH_RasGAP_CG9209 RAS_G 97.8 0.00011 2.4E-09 66.8 9.6 79 297-396 19-97 (98)
45 KOG3564|consensus 97.8 0.0001 2.2E-09 81.9 10.7 86 208-294 284-391 (604)
46 cd01241 PH_Akt Akt pleckstrin 97.8 0.00023 5.1E-09 65.0 11.0 98 283-397 3-101 (102)
47 cd01254 PH_PLD Phospholipase D 97.7 0.00026 5.6E-09 66.8 11.0 87 296-397 30-121 (121)
48 cd01219 PH_FGD FGD (faciogenit 97.7 0.00057 1.2E-08 62.4 12.1 96 283-398 4-99 (101)
49 PF15413 PH_11: Pleckstrin hom 97.7 0.00033 7.2E-09 65.2 10.6 106 283-397 1-112 (112)
50 cd00900 PH-like Pleckstrin hom 97.7 0.00052 1.1E-08 59.3 10.9 95 284-396 2-98 (99)
51 cd01257 PH_IRS Insulin recepto 97.7 0.00052 1.1E-08 62.8 11.1 93 282-397 3-101 (101)
52 KOG2996|consensus 97.4 4.4E-05 9.5E-10 86.1 1.3 58 207-265 520-577 (865)
53 cd01245 PH_RasGAP_CG5898 RAS G 97.4 0.00099 2.2E-08 60.6 9.5 86 291-396 7-97 (98)
54 KOG0193|consensus 97.2 0.00014 3.1E-09 83.5 2.3 53 207-262 175-227 (678)
55 cd01253 PH_beta_spectrin Beta- 97.2 0.0036 7.8E-08 57.0 10.6 84 296-396 20-103 (104)
56 cd01230 PH_EFA6 EFA6 Pleckstri 97.1 0.0039 8.5E-08 58.6 10.1 90 296-400 23-113 (117)
57 cd01220 PH_CDEP Chondrocyte-de 97.0 0.011 2.3E-07 54.0 11.8 94 283-398 4-97 (99)
58 cd01237 Unc112 Unc-112 pleckst 96.9 0.005 1.1E-07 56.6 8.7 97 285-397 5-102 (106)
59 PF15405 PH_5: Pleckstrin homo 96.8 0.0012 2.7E-08 63.5 4.3 42 355-398 94-135 (135)
60 KOG0930|consensus 96.6 0.0084 1.8E-07 63.1 9.0 99 282-399 261-376 (395)
61 KOG0612|consensus 96.3 0.0018 4E-08 79.1 1.9 82 279-365 1102-1183(1317)
62 KOG0291|consensus 96.1 1.9 4E-05 51.5 24.8 231 423-684 308-562 (893)
63 cd00200 WD40 WD40 domain, foun 96.1 1.8 3.8E-05 43.3 28.7 232 422-684 9-261 (289)
64 PF15410 PH_9: Pleckstrin homo 95.9 0.018 4E-07 54.1 6.6 88 295-397 22-117 (119)
65 cd01218 PH_phafin2 Phafin2 Pl 95.2 0.25 5.5E-06 45.5 11.1 87 296-401 15-101 (104)
66 cd01259 PH_Apbb1ip Apbb1ip (Am 95.0 0.079 1.7E-06 49.1 7.0 106 283-397 2-107 (114)
67 cd00200 WD40 WD40 domain, foun 94.6 5.4 0.00012 39.8 26.7 224 453-707 7-246 (289)
68 cd01261 PH_SOS Son of Sevenles 94.5 0.48 1E-05 44.3 11.2 38 356-399 73-110 (112)
69 cd01249 PH_oligophrenin Oligop 94.3 0.39 8.5E-06 44.2 9.7 95 284-395 2-102 (104)
70 PF15409 PH_8: Pleckstrin homo 94.1 0.44 9.4E-06 42.7 9.4 77 295-397 10-88 (89)
71 PF03107 C1_2: C1 domain; Int 93.6 0.053 1.1E-06 38.5 2.1 29 223-253 2-30 (30)
72 KOG2114|consensus 93.2 14 0.0003 45.2 22.1 224 424-668 27-278 (933)
73 COG2706 3-carboxymuconate cycl 92.7 19 0.00041 39.9 21.6 214 456-679 89-330 (346)
74 PF10146 zf-C4H2: Zinc finger- 92.5 5.3 0.00012 42.0 16.1 83 23-136 12-94 (230)
75 PF14197 Cep57_CLD_2: Centroso 92.3 1.4 3.1E-05 37.6 9.4 63 74-136 5-67 (69)
76 KOG4378|consensus 92.1 6.4 0.00014 45.2 16.7 144 432-592 142-290 (673)
77 KOG1453|consensus 91.4 0.05 1.1E-06 67.7 -0.5 42 220-264 555-596 (918)
78 KOG0294|consensus 91.1 5 0.00011 43.7 14.0 103 454-574 126-228 (362)
79 PRK11028 6-phosphogluconolacto 90.8 27 0.00059 37.8 26.2 190 474-681 8-218 (330)
80 KOG3640|consensus 90.8 0.43 9.4E-06 57.8 6.4 112 278-402 987-1110(1116)
81 KOG0291|consensus 90.3 50 0.0011 40.1 26.2 245 422-684 350-624 (893)
82 cd01228 PH_BCR-related BCR (br 89.9 0.37 8E-06 43.5 3.8 26 374-399 70-95 (96)
83 KOG1169|consensus 89.1 0.17 3.6E-06 59.6 1.3 56 207-262 95-153 (634)
84 cd01222 PH_clg Clg (common-sit 89.1 0.89 1.9E-05 41.4 5.7 38 355-397 57-94 (97)
85 KOG0296|consensus 88.9 43 0.00094 37.4 23.5 159 531-708 212-396 (399)
86 PF07649 C1_3: C1-like domain; 88.9 0.16 3.5E-06 35.9 0.6 29 223-253 2-30 (30)
87 TIGR03866 PQQ_ABC_repeats PQQ- 88.7 32 0.00069 35.5 28.1 199 456-681 31-246 (300)
88 PF15404 PH_4: Pleckstrin homo 88.6 3.5 7.6E-05 41.9 10.2 28 366-395 155-182 (185)
89 PTZ00420 coronin; Provisional 88.3 64 0.0014 38.6 24.8 199 454-676 73-297 (568)
90 PF02239 Cytochrom_D1: Cytochr 88.3 49 0.0011 37.2 21.4 195 468-681 6-211 (369)
91 KOG1273|consensus 87.8 48 0.001 36.5 21.0 246 425-699 26-321 (405)
92 KOG3751|consensus 87.7 0.99 2.2E-05 51.8 6.1 106 283-399 319-425 (622)
93 KOG2315|consensus 87.6 54 0.0012 38.4 19.7 213 461-700 131-374 (566)
94 KOG2048|consensus 87.0 77 0.0017 38.0 24.2 235 417-710 20-275 (691)
95 COG3883 Uncharacterized protei 86.9 3 6.5E-05 44.6 8.8 63 78-140 35-97 (265)
96 cd01226 PH_exo84 Exocyst compl 86.2 1.7 3.7E-05 39.8 5.7 49 337-399 51-99 (100)
97 KOG0690|consensus 86.2 1.5 3.2E-05 48.1 6.1 106 282-404 16-122 (516)
98 cd01258 PH_syntrophin Syntroph 85.6 2.9 6.2E-05 38.9 7.0 97 285-395 3-106 (108)
99 KOG2048|consensus 85.4 92 0.002 37.4 20.7 238 423-680 246-513 (691)
100 cd01232 PH_TRIO Trio pleckstri 85.0 17 0.00036 34.2 11.8 103 283-398 7-112 (114)
101 cd01256 PH_dynamin Dynamin ple 84.7 10 0.00022 34.7 9.7 97 283-394 3-101 (110)
102 PF13360 PQQ_2: PQQ-like domai 84.6 34 0.00074 34.6 15.3 164 530-708 45-228 (238)
103 KOG0289|consensus 84.4 29 0.00062 39.5 15.1 133 424-570 349-492 (506)
104 cd01221 PH_ephexin Ephexin Ple 83.6 2.2 4.8E-05 40.7 5.4 39 356-395 81-119 (125)
105 PF09726 Macoilin: Transmembra 83.4 11 0.00025 45.8 12.6 35 71-105 485-519 (697)
106 KOG0292|consensus 83.1 1.3E+02 0.0029 37.4 23.8 65 624-690 432-497 (1202)
107 COG4026 Uncharacterized protei 82.7 8.4 0.00018 39.9 9.4 69 72-140 132-201 (290)
108 PF14727 PHTB1_N: PTHB1 N-term 82.5 1E+02 0.0022 35.6 26.9 237 456-710 72-361 (418)
109 KOG1274|consensus 82.4 27 0.00059 42.9 14.9 108 422-538 96-217 (933)
110 KOG2445|consensus 82.4 20 0.00043 39.2 12.5 127 454-582 111-256 (361)
111 PF11559 ADIP: Afadin- and alp 82.4 46 0.00099 32.4 14.4 113 4-139 37-149 (151)
112 KOG0310|consensus 82.1 30 0.00065 39.7 14.3 143 422-580 153-306 (487)
113 KOG0266|consensus 82.0 1.1E+02 0.0023 35.5 24.1 163 520-700 218-399 (456)
114 PF12325 TMF_TATA_bd: TATA ele 81.9 29 0.00063 32.9 12.1 54 83-136 49-102 (120)
115 cd01224 PH_Collybistin Collybi 81.7 24 0.00051 33.0 11.2 60 329-396 46-105 (109)
116 PF15406 PH_6: Pleckstrin homo 81.4 3.2 6.8E-05 38.5 5.3 72 300-396 40-111 (112)
117 PLN00188 enhanced disease resi 81.0 8.7 0.00019 46.4 10.2 106 281-399 4-110 (719)
118 KOG0279|consensus 80.7 90 0.002 33.9 17.4 146 422-582 105-262 (315)
119 PF07888 CALCOCO1: Calcium bin 80.4 68 0.0015 38.0 16.9 61 75-135 379-443 (546)
120 KOG0971|consensus 79.8 16 0.00034 44.9 11.6 28 107-134 330-357 (1243)
121 KOG0972|consensus 79.7 13 0.00028 40.1 9.8 82 19-134 245-326 (384)
122 KOG1407|consensus 79.6 82 0.0018 33.9 15.6 203 452-683 61-272 (313)
123 KOG0650|consensus 79.4 20 0.00043 42.2 12.0 176 532-711 423-638 (733)
124 KOG0299|consensus 79.2 1.3E+02 0.0028 34.7 18.7 206 422-684 202-426 (479)
125 PF07106 TBPIP: Tat binding pr 78.9 6.9 0.00015 38.9 7.4 56 82-140 76-133 (169)
126 KOG0977|consensus 78.5 3.4 7.4E-05 48.4 5.7 127 4-136 182-337 (546)
127 PRK10884 SH3 domain-containing 78.0 13 0.00029 38.4 9.3 73 60-136 76-159 (206)
128 PF07798 DUF1640: Protein of u 77.7 42 0.00091 33.7 12.7 22 20-41 45-66 (177)
129 PF08317 Spc7: Spc7 kinetochor 77.7 33 0.00072 37.9 13.0 17 25-41 183-199 (325)
130 PTZ00267 NIMA-related protein 77.7 5.1 0.00011 46.3 7.0 99 282-398 378-476 (478)
131 KOG1645|consensus 77.5 32 0.0007 38.8 12.5 145 534-710 310-461 (463)
132 KOG0932|consensus 77.3 1.1 2.5E-05 51.6 1.4 93 296-402 529-621 (774)
133 PRK11028 6-phosphogluconolacto 77.1 1.1E+02 0.0025 33.0 18.9 135 532-676 13-161 (330)
134 PF14593 PH_3: PH domain; PDB: 77.0 22 0.00047 32.9 9.4 88 281-400 13-101 (104)
135 PF10498 IFT57: Intra-flagella 76.5 26 0.00056 39.5 11.7 54 81-134 266-319 (359)
136 PRK13729 conjugal transfer pil 76.3 8.6 0.00019 44.3 8.0 42 94-135 82-123 (475)
137 KOG2110|consensus 76.3 1.2E+02 0.0025 34.2 16.2 40 546-587 79-118 (391)
138 KOG0772|consensus 76.0 1.7E+02 0.0036 34.4 21.3 123 454-581 213-346 (641)
139 PF10779 XhlA: Haemolysin XhlA 75.6 13 0.00029 31.7 7.2 47 91-137 2-48 (71)
140 KOG2321|consensus 75.3 1.6E+02 0.0034 35.0 17.5 245 422-698 54-332 (703)
141 PF09304 Cortex-I_coil: Cortex 75.3 56 0.0012 30.4 11.4 67 21-128 11-77 (107)
142 PRK11637 AmiB activator; Provi 75.2 18 0.00039 41.5 10.4 44 91-134 78-121 (428)
143 PF04053 Coatomer_WDAD: Coatom 75.1 33 0.00072 39.7 12.5 137 555-711 33-174 (443)
144 PRK11637 AmiB activator; Provi 75.0 34 0.00075 39.2 12.7 8 344-351 389-396 (428)
145 PF13094 CENP-Q: CENP-Q, a CEN 74.6 12 0.00026 36.9 7.7 55 79-133 32-86 (160)
146 KOG0647|consensus 74.3 49 0.0011 36.2 12.4 164 499-674 27-230 (347)
147 PRK10884 SH3 domain-containing 73.7 34 0.00074 35.5 11.0 33 100-132 137-169 (206)
148 PF14182 YgaB: YgaB-like prote 73.3 20 0.00043 31.4 7.6 50 72-139 12-63 (79)
149 KOG1539|consensus 72.8 2E+02 0.0044 35.5 18.2 256 408-680 192-486 (910)
150 cd01223 PH_Vav Vav pleckstrin 72.7 28 0.0006 32.9 9.1 39 356-399 74-112 (116)
151 KOG1273|consensus 72.5 1E+02 0.0022 34.0 14.3 60 551-623 21-83 (405)
152 KOG2264|consensus 72.2 13 0.00028 43.3 8.0 55 82-136 80-134 (907)
153 PF03178 CPSF_A: CPSF A subuni 71.8 50 0.0011 35.9 12.5 57 520-582 100-157 (321)
154 KOG3532|consensus 71.6 0.96 2.1E-05 53.2 -1.0 48 206-255 742-789 (1051)
155 PF09726 Macoilin: Transmembra 71.6 42 0.00092 41.0 12.8 111 13-135 451-571 (697)
156 KOG1962|consensus 71.4 15 0.00033 38.2 7.7 51 92-142 162-212 (216)
157 PF03178 CPSF_A: CPSF A subuni 70.6 73 0.0016 34.6 13.5 52 531-583 62-116 (321)
158 PF04156 IncA: IncA protein; 70.4 88 0.0019 31.4 13.1 48 88-135 123-170 (191)
159 KOG2110|consensus 70.3 54 0.0012 36.7 11.9 123 567-709 19-170 (391)
160 KOG3723|consensus 70.2 2.5 5.4E-05 49.0 1.9 102 282-402 736-840 (851)
161 PF14781 BBS2_N: Ciliary BBSom 70.0 1.1E+02 0.0024 29.7 12.7 70 508-583 2-82 (136)
162 COG3074 Uncharacterized protei 70.0 40 0.00086 28.9 8.4 54 87-140 17-70 (79)
163 PF06637 PV-1: PV-1 protein (P 69.8 22 0.00048 39.7 8.8 60 76-136 308-376 (442)
164 PRK15422 septal ring assembly 69.2 41 0.00088 29.5 8.5 60 81-140 11-70 (79)
165 COG1579 Zn-ribbon protein, pos 69.1 22 0.00048 37.7 8.4 44 93-136 36-79 (239)
166 PF04111 APG6: Autophagy prote 68.8 14 0.00031 40.7 7.4 45 92-136 47-91 (314)
167 PF06785 UPF0242: Uncharacteri 68.6 20 0.00043 39.4 8.1 94 20-135 69-174 (401)
168 KOG2096|consensus 68.4 2E+02 0.0043 32.0 19.6 40 453-493 84-123 (420)
169 KOG0977|consensus 68.1 62 0.0013 38.3 12.5 35 7-41 94-128 (546)
170 KOG3532|consensus 68.0 0.88 1.9E-05 53.5 -2.2 52 205-258 67-118 (1051)
171 KOG0161|consensus 67.9 68 0.0015 43.5 14.2 61 72-132 871-931 (1930)
172 KOG0646|consensus 67.6 2.4E+02 0.0052 32.6 16.6 194 422-629 81-301 (476)
173 PRK00888 ftsB cell division pr 67.6 15 0.00032 34.0 6.1 35 97-131 29-63 (105)
174 KOG2106|consensus 67.5 1.2E+02 0.0025 35.5 14.1 58 520-581 461-518 (626)
175 KOG2055|consensus 67.3 1.2E+02 0.0025 35.1 14.0 176 456-655 304-492 (514)
176 KOG0278|consensus 66.3 1.6E+02 0.0034 31.8 13.8 155 433-615 112-276 (334)
177 PF06156 DUF972: Protein of un 66.2 25 0.00054 32.7 7.3 50 91-140 4-53 (107)
178 PF13815 Dzip-like_N: Iguana/D 66.2 26 0.00056 32.9 7.6 59 63-131 58-116 (118)
179 PTZ00283 serine/threonine prot 66.1 10 0.00022 44.2 5.9 42 352-399 449-490 (496)
180 smart00787 Spc7 Spc7 kinetocho 65.9 29 0.00064 38.2 9.0 41 94-134 203-243 (312)
181 KOG4571|consensus 65.9 12 0.00026 40.4 5.8 38 100-137 246-283 (294)
182 PF14073 Cep57_CLD: Centrosome 65.8 88 0.0019 31.7 11.5 71 67-137 88-169 (178)
183 KOG0995|consensus 65.4 74 0.0016 37.6 12.3 62 75-136 253-314 (581)
184 COG1382 GimC Prefoldin, chaper 65.4 44 0.00095 31.7 8.7 65 75-139 14-107 (119)
185 COG4026 Uncharacterized protei 65.3 32 0.0007 35.8 8.4 63 75-140 108-173 (290)
186 cd01225 PH_Cool_Pix Cool (clon 65.0 58 0.0013 30.5 9.3 83 297-397 26-108 (111)
187 KOG2055|consensus 65.0 2.7E+02 0.0059 32.3 18.9 146 422-582 213-374 (514)
188 PF08317 Spc7: Spc7 kinetochor 64.5 78 0.0017 35.0 12.2 38 95-132 209-246 (325)
189 KOG1445|consensus 64.0 58 0.0013 38.8 11.1 129 430-574 637-786 (1012)
190 PF10282 Lactonase: Lactonase, 64.0 2.3E+02 0.005 31.2 21.1 162 520-681 50-235 (345)
191 KOG1853|consensus 63.8 20 0.00043 37.9 6.7 26 109-134 52-77 (333)
192 PF12240 Angiomotin_C: Angiomo 63.6 1.2E+02 0.0026 31.3 12.1 42 101-142 128-169 (205)
193 KOG4424|consensus 63.1 8.8 0.00019 44.9 4.4 85 296-400 510-597 (623)
194 TIGR03866 PQQ_ABC_repeats PQQ- 63.0 1.9E+02 0.004 29.7 28.3 205 456-682 73-289 (300)
195 PF14662 CCDC155: Coiled-coil 62.8 1.1E+02 0.0025 31.3 11.7 18 24-41 34-51 (193)
196 KOG1036|consensus 62.5 85 0.0018 34.4 11.3 42 532-576 255-297 (323)
197 smart00787 Spc7 Spc7 kinetocho 62.5 83 0.0018 34.7 11.7 18 110-127 240-257 (312)
198 KOG0279|consensus 62.4 87 0.0019 34.0 11.2 111 451-575 188-305 (315)
199 PF05278 PEARLI-4: Arabidopsis 61.7 79 0.0017 34.1 10.9 35 95-129 207-241 (269)
200 cd01234 PH_CADPS CADPS (Ca2+-d 60.6 15 0.00032 34.0 4.5 100 282-399 3-111 (117)
201 PF06005 DUF904: Protein of un 60.3 61 0.0013 28.0 8.1 50 84-140 14-63 (72)
202 PF07926 TPR_MLP1_2: TPR/MLP1/ 60.1 1.6E+02 0.0035 28.1 12.6 49 78-126 42-90 (132)
203 PF07888 CALCOCO1: Calcium bin 60.0 98 0.0021 36.7 12.2 18 22-39 139-156 (546)
204 KOG0994|consensus 59.3 1.1E+02 0.0023 39.2 12.6 56 77-132 1580-1635(1758)
205 KOG4643|consensus 59.1 55 0.0012 41.0 10.1 59 78-136 268-328 (1195)
206 PF13851 GAS: Growth-arrest sp 58.8 56 0.0012 33.7 9.1 62 75-140 70-131 (201)
207 smart00338 BRLZ basic region l 58.3 37 0.0008 28.2 6.4 35 103-137 27-61 (65)
208 TIGR01834 PHA_synth_III_E poly 58.2 17 0.00037 40.1 5.4 52 85-136 264-316 (320)
209 PF04156 IncA: IncA protein; 57.9 79 0.0017 31.8 10.0 55 81-135 95-149 (191)
210 PRK09039 hypothetical protein; 57.8 1E+02 0.0022 34.5 11.5 45 91-135 140-184 (343)
211 KOG0650|consensus 57.7 89 0.0019 37.2 11.1 162 450-632 516-685 (733)
212 PLN02678 seryl-tRNA synthetase 57.5 44 0.00094 38.8 8.8 48 354-407 273-322 (448)
213 PF12999 PRKCSH-like: Glucosid 57.0 42 0.00092 33.9 7.6 39 98-136 135-173 (176)
214 PF12325 TMF_TATA_bd: TATA ele 56.5 78 0.0017 30.1 8.9 50 91-140 33-85 (120)
215 PF10186 Atg14: UV radiation r 56.5 78 0.0017 33.7 10.3 46 89-134 57-102 (302)
216 PHA02562 46 endonuclease subun 55.9 2.2E+02 0.0048 33.5 14.7 69 65-134 298-369 (562)
217 KOG0276|consensus 55.7 4.5E+02 0.0097 31.8 21.3 255 422-705 183-486 (794)
218 PHA01750 hypothetical protein 55.3 55 0.0012 27.7 6.6 36 90-132 37-72 (75)
219 PRK09039 hypothetical protein; 55.2 1.3E+02 0.0028 33.6 11.9 45 82-129 141-185 (343)
220 TIGR00606 rad50 rad50. This fa 55.0 1.2E+02 0.0025 40.2 13.2 59 78-136 871-929 (1311)
221 KOG3478|consensus 54.6 1.4E+02 0.0031 27.9 9.7 88 26-141 2-101 (120)
222 PF04977 DivIC: Septum formati 54.5 30 0.00066 29.4 5.5 30 99-128 21-50 (80)
223 PF07716 bZIP_2: Basic region 54.3 36 0.00077 27.4 5.4 30 102-131 25-54 (54)
224 PF11932 DUF3450: Protein of u 54.3 1E+02 0.0022 32.7 10.4 58 79-136 40-97 (251)
225 COG1579 Zn-ribbon protein, pos 54.0 1.2E+02 0.0027 32.2 10.7 14 219-232 219-232 (239)
226 COG4942 Membrane-bound metallo 53.8 50 0.0011 37.8 8.3 43 92-134 70-112 (420)
227 PF10481 CENP-F_N: Cenp-F N-te 53.8 95 0.0021 33.5 9.7 58 79-136 72-129 (307)
228 PF08662 eIF2A: Eukaryotic tra 53.5 2.5E+02 0.0055 28.3 14.4 112 456-583 60-180 (194)
229 KOG0318|consensus 52.5 4.6E+02 0.01 31.0 28.3 253 422-707 147-470 (603)
230 KOG2111|consensus 52.3 3.7E+02 0.008 29.9 17.4 98 476-582 157-256 (346)
231 KOG3647|consensus 51.7 70 0.0015 34.3 8.4 59 75-136 102-160 (338)
232 PF12808 Mto2_bdg: Micro-tubul 51.6 32 0.0007 27.8 4.6 41 78-128 8-48 (52)
233 PF08662 eIF2A: Eukaryotic tra 51.3 2.8E+02 0.006 28.1 16.1 81 616-700 71-163 (194)
234 PF12234 Rav1p_C: RAVE protein 51.2 2.3E+02 0.0051 34.3 13.7 59 520-582 89-156 (631)
235 KOG1446|consensus 51.1 3.8E+02 0.0082 29.6 23.4 116 443-576 87-210 (311)
236 PTZ00491 major vault protein; 50.7 83 0.0018 39.0 10.0 52 73-124 698-749 (850)
237 PF00038 Filament: Intermediat 50.5 1.8E+02 0.004 31.5 12.0 59 75-133 83-141 (312)
238 PLN02866 phospholipase D 50.5 76 0.0016 40.3 9.8 87 297-398 216-307 (1068)
239 PRK04778 septation ring format 50.5 1.1E+02 0.0024 36.5 11.1 32 9-40 293-324 (569)
240 KOG1962|consensus 50.0 50 0.0011 34.5 6.9 43 93-135 149-191 (216)
241 PF08746 zf-RING-like: RING-li 49.8 6.1 0.00013 30.5 0.3 28 224-255 1-30 (43)
242 KOG1272|consensus 49.7 64 0.0014 37.2 8.2 124 448-586 285-412 (545)
243 PF05911 DUF869: Plant protein 49.5 1.3E+02 0.0029 37.2 11.6 61 70-130 585-645 (769)
244 PRK13729 conjugal transfer pil 49.1 52 0.0011 38.2 7.6 40 101-140 82-121 (475)
245 KOG1117|consensus 48.7 26 0.00057 43.0 5.3 78 297-398 201-279 (1186)
246 PRK12704 phosphodiesterase; Pr 48.6 2.6E+02 0.0056 33.2 13.5 6 436-441 472-477 (520)
247 TIGR02894 DNA_bind_RsfA transc 48.5 84 0.0018 31.3 7.9 41 93-133 109-149 (161)
248 KOG0646|consensus 48.5 3.9E+02 0.0084 31.0 14.0 148 520-684 52-218 (476)
249 PRK09343 prefoldin subunit bet 48.4 1.3E+02 0.0028 28.4 9.1 33 78-110 4-36 (121)
250 KOG2264|consensus 48.3 99 0.0021 36.5 9.5 46 91-136 103-148 (907)
251 PHA02562 46 endonuclease subun 48.2 1.6E+02 0.0035 34.6 12.0 55 79-133 349-403 (562)
252 PF08614 ATG16: Autophagy prot 48.2 20 0.00043 36.6 3.8 26 103-128 131-156 (194)
253 KOG0243|consensus 48.1 1.4E+02 0.0029 38.1 11.3 15 27-41 405-419 (1041)
254 PRK13169 DNA replication intia 47.8 78 0.0017 29.6 7.2 28 107-134 27-54 (110)
255 cd01262 PH_PDK1 3-Phosphoinosi 47.7 95 0.0021 28.0 7.4 73 299-398 16-88 (89)
256 PRK00888 ftsB cell division pr 47.7 40 0.00086 31.2 5.3 34 103-136 28-61 (105)
257 PF08172 CASP_C: CASP C termin 47.6 41 0.00088 35.9 6.1 43 98-140 89-131 (248)
258 PF05911 DUF869: Plant protein 47.5 1.9E+02 0.0042 35.8 12.5 58 77-134 634-691 (769)
259 cd01227 PH_Dbs Dbs (DBL's big 47.3 2.7E+02 0.0058 27.0 11.1 38 357-399 79-116 (133)
260 COG2433 Uncharacterized conser 47.3 1.2E+02 0.0025 36.3 10.1 48 83-130 462-509 (652)
261 TIGR00414 serS seryl-tRNA synt 47.3 1E+02 0.0022 35.5 9.7 47 354-406 270-316 (418)
262 PF05529 Bap31: B-cell recepto 47.0 98 0.0021 31.3 8.6 26 109-134 161-186 (192)
263 KOG2896|consensus 46.9 1.1E+02 0.0024 34.3 9.4 52 65-119 92-151 (377)
264 TIGR02977 phageshock_pspA phag 46.5 3.6E+02 0.0078 28.0 13.5 41 1-41 1-46 (219)
265 KOG2391|consensus 46.3 94 0.002 34.5 8.6 59 79-137 219-281 (365)
266 PF10212 TTKRSYEDQ: Predicted 46.3 2.5E+02 0.0054 33.1 12.5 55 79-136 460-514 (518)
267 PF06936 Selenoprotein_S: Sele 46.2 63 0.0014 33.1 7.0 29 69-100 71-99 (190)
268 COG2433 Uncharacterized conser 46.2 38 0.00083 40.2 6.0 75 63-137 374-457 (652)
269 PF07106 TBPIP: Tat binding pr 46.0 73 0.0016 31.6 7.4 62 69-136 75-136 (169)
270 KOG0521|consensus 45.8 22 0.00047 44.0 4.2 97 281-400 274-370 (785)
271 TIGR01010 BexC_CtrB_KpsE polys 45.7 1.4E+02 0.0031 33.2 10.5 30 88-117 170-199 (362)
272 PHA01750 hypothetical protein 45.5 84 0.0018 26.6 6.2 47 88-140 27-73 (75)
273 PF05010 TACC: Transforming ac 45.2 2.5E+02 0.0054 29.3 11.2 47 90-136 149-195 (207)
274 PF02403 Seryl_tRNA_N: Seryl-t 45.1 1.4E+02 0.0031 27.1 8.6 19 116-134 74-92 (108)
275 PF09755 DUF2046: Uncharacteri 45.1 2.4E+02 0.0051 31.2 11.4 52 92-143 153-205 (310)
276 PF05701 WEMBL: Weak chloropla 45.0 2.6E+02 0.0057 33.1 12.9 44 93-136 314-357 (522)
277 PF15397 DUF4618: Domain of un 44.9 2.9E+02 0.0063 29.8 11.9 42 96-137 180-221 (258)
278 PF00628 PHD: PHD-finger; Int 44.8 20 0.00044 27.9 2.6 31 223-255 1-31 (51)
279 PF07227 DUF1423: Protein of u 44.7 14 0.0003 42.3 2.2 43 220-262 122-170 (446)
280 PRK02224 chromosome segregatio 44.5 1.8E+02 0.0039 36.4 12.2 17 9-25 576-592 (880)
281 PF07798 DUF1640: Protein of u 44.2 2.7E+02 0.0059 27.9 11.3 25 17-41 18-42 (177)
282 PF10458 Val_tRNA-synt_C: Valy 43.9 1.5E+02 0.0033 24.8 7.9 45 91-135 7-65 (66)
283 PF11559 ADIP: Afadin- and alp 43.7 1.6E+02 0.0036 28.5 9.3 59 76-134 40-98 (151)
284 PF11083 Streptin-Immun: Lanti 43.6 59 0.0013 29.8 5.5 71 65-141 12-84 (99)
285 PF00038 Filament: Intermediat 43.5 3.2E+02 0.007 29.5 12.6 93 23-134 22-114 (312)
286 KOG0804|consensus 43.5 3.2E+02 0.007 31.6 12.4 6 34-39 348-353 (493)
287 TIGR02209 ftsL_broad cell divi 43.4 92 0.002 27.0 6.8 34 97-130 26-59 (85)
288 PF13901 DUF4206: Domain of un 43.3 18 0.00038 37.4 2.5 39 222-262 153-194 (202)
289 PF10805 DUF2730: Protein of u 42.8 76 0.0016 29.3 6.4 42 95-136 35-78 (106)
290 KOG0266|consensus 42.6 5.9E+02 0.013 29.4 22.3 205 453-683 201-420 (456)
291 PLN02320 seryl-tRNA synthetase 42.6 1E+02 0.0022 36.2 8.9 51 353-409 330-380 (502)
292 KOG4343|consensus 42.3 72 0.0016 37.3 7.3 52 85-136 285-336 (655)
293 cd00584 Prefoldin_alpha Prefol 42.2 3E+02 0.0064 25.8 11.1 36 102-137 87-122 (129)
294 COG3524 KpsE Capsule polysacch 42.1 44 0.00096 36.5 5.3 52 92-143 227-278 (372)
295 PF00170 bZIP_1: bZIP transcri 42.1 92 0.002 25.7 6.3 32 105-136 29-60 (64)
296 PLN03188 kinesin-12 family pro 42.0 2E+02 0.0043 37.4 11.5 108 2-132 1125-1241(1320)
297 PF02185 HR1: Hr1 repeat; Int 41.9 1.1E+02 0.0024 25.8 6.9 52 77-129 4-60 (70)
298 PF10282 Lactonase: Lactonase, 41.6 5.1E+02 0.011 28.4 25.2 212 456-680 87-332 (345)
299 KOG1274|consensus 41.2 8.4E+02 0.018 30.8 23.2 108 457-581 15-123 (933)
300 KOG4603|consensus 41.2 2.6E+02 0.0057 28.2 10.0 26 18-43 26-54 (201)
301 PF09730 BicD: Microtubule-ass 41.1 89 0.0019 38.3 8.3 53 82-137 38-90 (717)
302 PF04977 DivIC: Septum formati 41.1 63 0.0014 27.4 5.4 34 102-135 17-50 (80)
303 TIGR02169 SMC_prok_A chromosom 41.1 3.5E+02 0.0077 34.6 14.3 14 621-634 1100-1113(1164)
304 PF00769 ERM: Ezrin/radixin/mo 41.0 1.4E+02 0.003 31.8 8.9 62 75-136 48-109 (246)
305 KOG0250|consensus 41.0 76 0.0016 40.2 7.7 54 79-135 655-708 (1074)
306 KOG0250|consensus 41.0 3E+02 0.0065 35.2 12.7 34 621-657 1015-1053(1074)
307 PF15619 Lebercilin: Ciliary p 41.0 4.2E+02 0.0091 27.2 13.2 100 18-140 53-188 (194)
308 COG2706 3-carboxymuconate cycl 40.8 5.7E+02 0.012 28.7 24.3 197 478-680 16-233 (346)
309 TIGR02894 DNA_bind_RsfA transc 40.7 1.5E+02 0.0033 29.5 8.4 53 83-135 82-137 (161)
310 COG1196 Smc Chromosome segrega 40.7 3E+02 0.0065 35.9 13.6 29 80-108 813-841 (1163)
311 COG5185 HEC1 Protein involved 40.4 1.2E+02 0.0027 35.0 8.6 51 88-138 302-352 (622)
312 KOG0306|consensus 40.3 3E+02 0.0066 33.8 12.1 134 425-573 415-569 (888)
313 TIGR03319 YmdA_YtgF conserved 40.1 4.2E+02 0.0091 31.4 13.5 6 436-441 466-471 (514)
314 PF05529 Bap31: B-cell recepto 40.0 1.3E+02 0.0028 30.4 8.3 32 109-140 154-185 (192)
315 PF15254 CCDC14: Coiled-coil d 39.9 2.3E+02 0.005 34.9 11.1 57 74-134 483-540 (861)
316 KOG4603|consensus 39.9 80 0.0017 31.7 6.3 42 95-136 79-136 (201)
317 KOG0290|consensus 39.5 4.6E+02 0.01 28.9 12.3 124 437-579 165-362 (364)
318 PF14446 Prok-RING_1: Prokaryo 39.4 17 0.00037 29.6 1.4 36 221-257 5-40 (54)
319 PF11932 DUF3450: Protein of u 39.2 1.6E+02 0.0034 31.3 9.0 43 95-137 49-91 (251)
320 PF07200 Mod_r: Modifier of ru 39.2 1.7E+02 0.0038 28.2 8.7 36 6-41 5-42 (150)
321 PRK04778 septation ring format 38.8 1.1E+02 0.0025 36.4 8.8 49 76-124 291-339 (569)
322 COG1571 Predicted DNA-binding 38.8 20 0.00044 40.8 2.3 30 221-250 350-379 (421)
323 COG1196 Smc Chromosome segrega 38.8 3.8E+02 0.0083 35.0 14.1 25 89-113 794-818 (1163)
324 KOG0240|consensus 38.8 3.5E+02 0.0075 32.3 12.1 30 69-98 429-458 (607)
325 cd00089 HR1 Protein kinase C-r 38.8 1.2E+02 0.0026 25.7 6.6 54 74-128 9-68 (72)
326 PF11180 DUF2968: Protein of u 38.6 1.4E+02 0.0031 30.6 8.0 29 47-75 48-87 (192)
327 PRK10698 phage shock protein P 38.3 2.2E+02 0.0047 29.9 9.7 41 1-41 1-46 (222)
328 PF12999 PRKCSH-like: Glucosid 38.1 1.3E+02 0.0028 30.6 7.6 25 107-131 151-175 (176)
329 PF11768 DUF3312: Protein of u 38.0 4.3E+02 0.0094 31.4 12.8 51 532-582 237-289 (545)
330 KOG0299|consensus 38.0 5.3E+02 0.012 29.9 13.1 43 532-574 403-446 (479)
331 KOG4378|consensus 37.9 1.9E+02 0.0042 33.8 9.7 71 63-136 600-670 (673)
332 PRK10803 tol-pal system protei 37.7 1.2E+02 0.0025 32.7 7.8 37 92-128 65-101 (263)
333 PF14257 DUF4349: Domain of un 37.7 87 0.0019 33.3 6.9 56 83-139 137-192 (262)
334 PF08614 ATG16: Autophagy prot 37.6 3.8E+02 0.0083 27.2 11.3 38 88-125 144-181 (194)
335 PF09304 Cortex-I_coil: Cortex 37.6 3.1E+02 0.0067 25.6 9.2 53 82-134 20-76 (107)
336 KOG0647|consensus 37.5 5.4E+02 0.012 28.5 12.5 112 455-582 72-184 (347)
337 PRK00106 hypothetical protein; 37.4 5.5E+02 0.012 30.6 13.8 7 123-129 139-145 (535)
338 PF08606 Prp19: Prp19/Pso4-lik 37.3 2.7E+02 0.0059 24.0 8.5 57 78-137 8-64 (70)
339 KOG0318|consensus 37.2 7.8E+02 0.017 29.2 25.4 172 422-624 320-506 (603)
340 PF12709 Kinetocho_Slk19: Cent 37.1 95 0.0021 27.9 5.7 28 107-134 47-74 (87)
341 PF12718 Tropomyosin_1: Tropom 37.1 2.1E+02 0.0046 27.9 8.8 45 97-141 23-67 (143)
342 KOG0963|consensus 37.1 4.2E+02 0.0092 31.9 12.5 117 7-136 234-357 (629)
343 KOG0979|consensus 36.9 2.6E+02 0.0057 35.4 11.2 121 7-141 234-357 (1072)
344 KOG1003|consensus 36.9 1.4E+02 0.0031 30.7 7.6 52 82-136 8-73 (205)
345 PF05700 BCAS2: Breast carcino 36.9 2E+02 0.0043 30.1 9.2 60 79-138 144-211 (221)
346 PF14389 Lzipper-MIP1: Leucine 36.8 74 0.0016 28.4 5.1 64 74-137 15-82 (88)
347 KOG0994|consensus 36.7 6E+02 0.013 33.0 14.1 113 22-137 1511-1633(1758)
348 PF10168 Nup88: Nuclear pore c 36.6 1.5E+02 0.0032 36.6 9.4 33 8-40 575-607 (717)
349 PTZ00421 coronin; Provisional 36.6 7.7E+02 0.017 29.0 26.4 119 452-582 72-198 (493)
350 PF13815 Dzip-like_N: Iguana/D 36.4 1.2E+02 0.0026 28.5 6.8 41 94-137 75-115 (118)
351 PF03961 DUF342: Protein of un 36.1 1.5E+02 0.0031 34.4 8.8 28 110-137 376-403 (451)
352 PTZ00454 26S protease regulato 36.0 95 0.0021 35.4 7.2 39 98-136 25-63 (398)
353 PF07282 OrfB_Zn_ribbon: Putat 35.9 31 0.00066 28.9 2.5 31 220-250 27-58 (69)
354 PF15290 Syntaphilin: Golgi-lo 35.9 2.6E+02 0.0056 30.4 9.7 53 83-138 87-139 (305)
355 PF04111 APG6: Autophagy prote 35.5 5.3E+02 0.012 28.5 12.7 11 389-399 289-299 (314)
356 COG4942 Membrane-bound metallo 35.4 2.5E+02 0.0055 32.3 10.2 64 73-136 44-107 (420)
357 TIGR03185 DNA_S_dndD DNA sulfu 35.3 2E+02 0.0044 34.8 10.3 42 95-136 421-462 (650)
358 PRK05431 seryl-tRNA synthetase 35.0 93 0.002 35.8 6.9 49 351-406 265-314 (425)
359 PF14615 Rsa3: Ribosome-assemb 34.8 38 0.00082 26.9 2.6 20 22-41 5-24 (47)
360 PF12718 Tropomyosin_1: Tropom 34.7 1.3E+02 0.0027 29.4 6.8 52 82-136 77-128 (143)
361 PF15035 Rootletin: Ciliary ro 34.5 2.1E+02 0.0047 29.1 8.7 64 79-142 86-167 (182)
362 PRK00846 hypothetical protein; 34.4 2E+02 0.0043 25.3 7.2 48 73-136 14-61 (77)
363 KOG3531|consensus 34.2 26 0.00057 42.8 2.4 87 293-399 934-1020(1036)
364 COG1382 GimC Prefoldin, chaper 33.9 1.6E+02 0.0035 28.0 7.1 37 99-135 74-110 (119)
365 PF05266 DUF724: Protein of un 33.9 3.3E+02 0.0072 27.9 10.0 18 107-124 129-146 (190)
366 PF13874 Nup54: Nucleoporin co 33.8 2.4E+02 0.0053 27.2 8.7 63 74-136 36-99 (141)
367 PF07889 DUF1664: Protein of u 33.8 4E+02 0.0087 25.6 9.8 75 63-140 25-99 (126)
368 KOG4424|consensus 33.6 77 0.0017 37.5 5.9 42 356-404 334-375 (623)
369 PF07028 DUF1319: Protein of u 33.5 2E+02 0.0043 27.6 7.6 39 95-133 46-84 (126)
370 KOG4403|consensus 33.5 2.2E+02 0.0049 32.6 9.2 54 88-141 259-327 (575)
371 PF04871 Uso1_p115_C: Uso1 / p 33.2 4.6E+02 0.0099 25.4 10.6 6 34-39 6-11 (136)
372 cd00632 Prefoldin_beta Prefold 33.1 1.5E+02 0.0032 27.1 6.7 30 106-135 74-103 (105)
373 PF06785 UPF0242: Uncharacteri 33.0 1.1E+02 0.0024 33.9 6.5 56 65-120 161-219 (401)
374 PF10146 zf-C4H2: Zinc finger- 32.9 1.4E+02 0.0031 31.5 7.4 21 223-246 196-216 (230)
375 PF08700 Vps51: Vps51/Vps67; 32.7 3.2E+02 0.007 23.5 9.3 61 71-134 19-83 (87)
376 PF12329 TMF_DNA_bd: TATA elem 32.5 2E+02 0.0043 24.9 6.9 40 93-132 17-56 (74)
377 TIGR02231 conserved hypothetic 32.4 3.2E+02 0.0069 32.2 11.0 36 93-128 136-171 (525)
378 PF12128 DUF3584: Protein of u 32.3 4.8E+02 0.01 34.3 13.4 42 95-136 483-524 (1201)
379 PLN02678 seryl-tRNA synthetase 32.2 1.1E+02 0.0024 35.5 6.9 13 19-31 14-26 (448)
380 KOG1170|consensus 32.1 26 0.00056 42.7 1.8 59 206-264 103-162 (1099)
381 PRK13169 DNA replication intia 32.0 1.8E+02 0.0039 27.3 7.0 51 91-141 4-54 (110)
382 KOG1029|consensus 31.9 2E+02 0.0043 35.4 8.9 99 5-109 416-528 (1118)
383 PF14915 CCDC144C: CCDC144C pr 31.9 1.8E+02 0.0038 31.9 7.8 68 67-134 109-176 (305)
384 PF06548 Kinesin-related: Kine 31.7 6.8E+02 0.015 29.1 12.6 106 3-131 356-470 (488)
385 KOG4815|consensus 31.6 3.8E+02 0.0083 29.4 10.2 60 78-137 299-358 (511)
386 PF07246 Phlebovirus_NSM: Phle 31.5 2.7E+02 0.0058 30.1 9.0 29 108-136 201-229 (264)
387 KOG1451|consensus 31.5 91 0.002 37.0 5.9 100 282-399 266-368 (812)
388 TIGR03185 DNA_S_dndD DNA sulfu 31.4 4.5E+02 0.0097 31.9 12.3 38 91-128 431-468 (650)
389 PRK10722 hypothetical protein; 31.4 1.6E+02 0.0035 31.3 7.2 72 65-136 123-203 (247)
390 PF03980 Nnf1: Nnf1 ; InterPr 31.2 1.9E+02 0.0041 26.5 7.1 26 105-130 83-108 (109)
391 PRK11281 hypothetical protein; 31.1 2.6E+02 0.0057 36.3 10.5 25 79-103 126-150 (1113)
392 KOG2111|consensus 31.1 7.8E+02 0.017 27.4 18.4 135 532-680 76-220 (346)
393 PF04880 NUDE_C: NUDE protein, 31.0 65 0.0014 32.4 4.2 35 98-136 10-44 (166)
394 PF05278 PEARLI-4: Arabidopsis 31.0 7.2E+02 0.016 27.0 13.2 42 95-136 214-255 (269)
395 PF14662 CCDC155: Coiled-coil 31.0 3.4E+02 0.0073 28.0 9.2 14 28-41 62-75 (193)
396 PF03962 Mnd1: Mnd1 family; I 31.0 1.9E+02 0.004 29.6 7.6 11 57-67 51-61 (188)
397 COG1422 Predicted membrane pro 30.8 1.3E+02 0.0028 31.1 6.3 41 94-134 71-112 (201)
398 KOG2751|consensus 30.6 3E+02 0.0064 31.7 9.6 41 95-135 183-223 (447)
399 KOG0963|consensus 30.6 8.2E+02 0.018 29.6 13.5 43 95-137 182-224 (629)
400 PF05667 DUF812: Protein of un 30.6 2.2E+02 0.0047 34.4 9.2 31 95-125 447-477 (594)
401 PRK04863 mukB cell division pr 30.5 4.8E+02 0.01 35.1 13.0 38 95-132 376-413 (1486)
402 PF08826 DMPK_coil: DMPK coile 30.5 3.2E+02 0.007 22.9 7.5 47 80-129 13-59 (61)
403 PF13831 PHD_2: PHD-finger; PD 30.5 19 0.00041 26.8 0.3 20 237-256 3-22 (36)
404 PF05615 THOC7: Tho complex su 30.4 3.5E+02 0.0077 25.8 9.2 26 110-135 75-100 (139)
405 PF00780 CNH: CNH domain; Int 30.3 6.4E+02 0.014 26.2 20.2 151 520-680 9-173 (275)
406 KOG0161|consensus 30.2 6.3E+02 0.014 34.8 13.9 115 7-134 1022-1143(1930)
407 TIGR00414 serS seryl-tRNA synt 30.2 1.2E+02 0.0027 34.7 6.9 26 112-137 72-97 (418)
408 PF13851 GAS: Growth-arrest sp 30.1 6.3E+02 0.014 26.0 12.4 27 111-137 88-114 (201)
409 PF14193 DUF4315: Domain of un 30.1 1.1E+02 0.0024 27.3 5.0 31 92-122 5-35 (83)
410 KOG1036|consensus 30.1 7.9E+02 0.017 27.2 16.3 145 425-594 57-209 (323)
411 PF15397 DUF4618: Domain of un 30.1 6.6E+02 0.014 27.1 11.7 38 4-41 50-89 (258)
412 PF09728 Taxilin: Myosin-like 30.1 7.8E+02 0.017 27.1 13.0 59 76-134 45-103 (309)
413 PF05266 DUF724: Protein of un 30.0 2.8E+02 0.0061 28.4 8.7 41 75-118 107-147 (190)
414 PF02403 Seryl_tRNA_N: Seryl-t 29.9 2.4E+02 0.0052 25.6 7.6 26 109-134 74-99 (108)
415 PF10226 DUF2216: Uncharacteri 29.8 2.9E+02 0.0064 28.3 8.5 64 65-129 64-135 (195)
416 TIGR01843 type_I_hlyD type I s 29.8 3E+02 0.0064 30.8 9.9 10 371-380 389-398 (423)
417 COG5570 Uncharacterized small 29.8 87 0.0019 25.4 3.8 15 109-123 5-19 (57)
418 PF06156 DUF972: Protein of un 29.7 2.1E+02 0.0045 26.7 7.0 38 99-136 19-56 (107)
419 PF04799 Fzo_mitofusin: fzo-li 29.6 95 0.0021 31.3 5.1 45 88-132 98-143 (171)
420 TIGR02338 gimC_beta prefoldin, 29.6 4.5E+02 0.0097 24.2 9.3 70 72-141 18-106 (110)
421 TIGR02168 SMC_prok_B chromosom 29.5 5.5E+02 0.012 32.8 13.3 7 390-396 1005-1011(1179)
422 PF12808 Mto2_bdg: Micro-tubul 29.4 1.1E+02 0.0024 24.8 4.4 26 111-136 24-49 (52)
423 PF00846 Hanta_nucleocap: Hant 29.4 1.8E+02 0.0039 32.9 7.6 25 93-117 7-31 (428)
424 PF11471 Sugarporin_N: Maltopo 29.4 89 0.0019 26.0 4.1 28 102-129 32-59 (60)
425 PF10234 Cluap1: Clusterin-ass 29.3 2.7E+02 0.0059 30.1 8.8 36 93-128 174-209 (267)
426 PF01576 Myosin_tail_1: Myosin 29.1 18 0.0004 45.3 0.0 68 74-141 243-310 (859)
427 PRK02224 chromosome segregatio 29.0 6.6E+02 0.014 31.5 13.6 23 18-40 172-194 (880)
428 KOG3119|consensus 29.0 2.5E+02 0.0054 30.3 8.6 33 104-136 217-249 (269)
429 PF13805 Pil1: Eisosome compon 28.9 2.7E+02 0.0058 30.2 8.6 60 73-132 130-195 (271)
430 KOG0300|consensus 28.9 4.3E+02 0.0092 29.4 10.0 65 422-487 357-429 (481)
431 COG2919 Septum formation initi 28.9 1.2E+02 0.0025 28.6 5.3 36 106-142 61-99 (117)
432 KOG4196|consensus 28.8 87 0.0019 30.1 4.4 24 113-136 78-101 (135)
433 TIGR00219 mreC rod shape-deter 28.7 1.7E+02 0.0036 31.9 7.3 50 81-133 59-108 (283)
434 KOG0978|consensus 28.7 5.8E+02 0.013 31.4 12.2 21 18-41 388-408 (698)
435 KOG4532|consensus 28.7 8.1E+02 0.018 26.8 12.5 59 520-582 173-233 (344)
436 KOG4552|consensus 28.6 2.5E+02 0.0053 29.2 7.8 36 65-100 33-72 (272)
437 PF05377 FlaC_arch: Flagella a 28.4 1.4E+02 0.0031 24.5 4.9 28 108-135 6-33 (55)
438 KOG2391|consensus 28.4 3.4E+02 0.0073 30.4 9.3 54 74-127 224-278 (365)
439 PRK03947 prefoldin subunit alp 28.4 5.3E+02 0.011 24.6 11.0 35 102-136 94-128 (140)
440 KOG0999|consensus 28.1 3.8E+02 0.0081 31.9 10.0 43 94-136 120-162 (772)
441 PRK10361 DNA recombination pro 28.0 4E+02 0.0086 31.3 10.4 18 96-113 75-92 (475)
442 KOG0294|consensus 28.0 8.8E+02 0.019 27.1 21.7 135 521-674 141-283 (362)
443 PF12777 MT: Microtubule-bindi 27.9 1.2E+02 0.0025 33.9 6.1 58 75-132 222-279 (344)
444 PRK02793 phi X174 lysis protei 27.9 2.9E+02 0.0062 23.8 7.1 46 73-134 9-54 (72)
445 PF06160 EzrA: Septation ring 27.8 5.1E+02 0.011 31.0 11.7 152 6-161 286-449 (560)
446 COG0419 SbcC ATPase involved i 27.8 4.9E+02 0.011 33.0 12.2 58 78-135 372-429 (908)
447 PRK09841 cryptic autophosphory 27.6 2.3E+02 0.0049 35.0 9.0 58 79-136 258-324 (726)
448 PF10473 CENP-F_leu_zip: Leuci 27.2 4.3E+02 0.0093 25.8 9.0 41 95-135 59-99 (140)
449 PF06419 COG6: Conserved oligo 27.0 3.1E+02 0.0066 33.3 9.8 49 88-136 45-93 (618)
450 PF03904 DUF334: Domain of unk 26.9 2E+02 0.0042 30.4 6.9 39 96-134 44-82 (230)
451 KOG0957|consensus 26.9 45 0.00098 38.6 2.5 74 165-252 77-150 (707)
452 PF09789 DUF2353: Uncharacteri 26.8 3.3E+02 0.0072 30.3 9.1 47 90-136 67-113 (319)
453 PF05335 DUF745: Protein of un 26.7 5.6E+02 0.012 26.3 10.2 65 76-140 90-154 (188)
454 PF03082 MAGSP: Male accessory 26.7 70 0.0015 33.1 3.6 51 78-131 145-195 (264)
455 PF15408 PH_7: Pleckstrin homo 26.6 43 0.00094 29.9 1.9 86 298-398 11-97 (104)
456 KOG3881|consensus 26.6 3.8E+02 0.0082 30.5 9.4 122 557-686 58-193 (412)
457 PF07200 Mod_r: Modifier of ru 26.5 2.4E+02 0.0052 27.2 7.3 49 88-136 34-82 (150)
458 KOG0577|consensus 26.5 6.5E+02 0.014 30.6 11.6 25 17-41 507-531 (948)
459 TIGR00606 rad50 rad50. This fa 26.4 6.6E+02 0.014 33.3 13.4 23 112-134 884-906 (1311)
460 smart00661 RPOL9 RNA polymeras 26.4 47 0.001 26.0 1.9 27 223-249 2-31 (52)
461 PF11853 DUF3373: Protein of u 26.2 58 0.0013 38.0 3.3 27 107-133 29-55 (489)
462 PRK04863 mukB cell division pr 26.0 7.8E+02 0.017 33.2 13.7 28 107-134 447-474 (1486)
463 PF09766 FimP: Fms-interacting 26.0 2.8E+02 0.006 31.2 8.6 57 83-139 96-152 (355)
464 TIGR03752 conj_TIGR03752 integ 25.8 3.2E+02 0.0069 32.0 9.0 25 115-139 115-139 (472)
465 PF05701 WEMBL: Weak chloropla 25.6 8.8E+02 0.019 28.7 13.1 45 93-137 286-330 (522)
466 PRK03992 proteasome-activating 25.6 1.7E+02 0.0037 33.1 7.0 43 94-136 7-49 (389)
467 cd01239 PH_PKD Protein kinase 25.6 2.8E+02 0.0061 26.3 7.0 74 283-368 2-75 (117)
468 PF02185 HR1: Hr1 repeat; Int 25.6 2.6E+02 0.0057 23.5 6.5 57 81-137 4-61 (70)
469 COG5019 CDC3 Septin family pro 25.5 3.8E+02 0.0083 30.3 9.3 25 116-140 342-366 (373)
470 PF15134 DUF4570: Domain of un 25.5 2.1E+02 0.0046 26.7 6.2 23 111-133 47-69 (109)
471 PRK11448 hsdR type I restricti 25.5 2.3E+02 0.0051 36.8 8.8 61 74-134 149-209 (1123)
472 PF12777 MT: Microtubule-bindi 25.5 2.8E+02 0.0061 30.8 8.6 48 93-140 233-280 (344)
473 PF02388 FemAB: FemAB family; 25.4 1.8E+02 0.0039 33.2 7.1 25 113-137 270-294 (406)
474 KOG0282|consensus 25.4 1.9E+02 0.004 33.7 6.9 191 501-707 214-412 (503)
475 KOG0964|consensus 25.4 6.8E+02 0.015 31.9 12.0 65 73-137 808-889 (1200)
476 COG4467 Regulator of replicati 25.4 3.2E+02 0.0069 25.6 7.2 42 99-140 12-53 (114)
477 PF04899 MbeD_MobD: MbeD/MobD 25.3 4.4E+02 0.0096 22.7 8.7 58 74-134 10-67 (70)
478 PF14712 Snapin_Pallidin: Snap 25.3 4.7E+02 0.01 23.0 8.4 26 114-139 62-87 (92)
479 KOG0996|consensus 25.3 4.1E+02 0.0088 34.4 10.3 90 49-139 751-843 (1293)
480 PF10174 Cast: RIM-binding pro 25.2 7.9E+02 0.017 30.8 12.8 36 7-42 225-261 (775)
481 KOG3433|consensus 25.2 4.6E+02 0.01 26.9 8.9 73 57-136 63-136 (203)
482 KOG0933|consensus 25.2 3E+02 0.0064 35.0 9.0 122 8-141 670-805 (1174)
483 KOG0301|consensus 25.1 1.3E+03 0.029 28.2 17.8 209 461-706 64-285 (745)
484 TIGR01843 type_I_hlyD type I s 25.0 9.8E+02 0.021 26.6 13.0 10 123-132 253-262 (423)
485 COG3883 Uncharacterized protei 25.0 2.2E+02 0.0048 30.8 7.1 59 74-132 41-103 (265)
486 PF12072 DUF3552: Domain of un 24.9 3.9E+02 0.0084 27.4 8.8 32 87-118 63-94 (201)
487 PF05837 CENP-H: Centromere pr 24.8 3.6E+02 0.0078 24.9 7.7 63 79-141 1-69 (106)
488 PF10267 Tmemb_cc2: Predicted 24.8 5.2E+02 0.011 29.7 10.4 13 123-135 276-288 (395)
489 PRK05431 seryl-tRNA synthetase 24.8 2E+02 0.0043 33.1 7.4 56 78-137 39-94 (425)
490 PF04102 SlyX: SlyX; InterPro 24.7 4E+02 0.0087 22.6 7.4 15 122-136 31-45 (69)
491 TIGR01069 mutS2 MutS2 family p 24.7 7.9E+02 0.017 30.7 12.9 22 18-39 500-521 (771)
492 TIGR01834 PHA_synth_III_E poly 24.6 84 0.0018 34.8 4.0 32 100-131 287-318 (320)
493 PF02994 Transposase_22: L1 tr 24.6 2.1E+02 0.0045 32.4 7.3 81 31-141 110-190 (370)
494 PRK00295 hypothetical protein; 24.5 4.1E+02 0.0089 22.6 7.4 49 72-136 5-53 (68)
495 TIGR02209 ftsL_broad cell divi 24.5 2E+02 0.0043 24.8 5.7 36 100-135 22-57 (85)
496 PF12657 TFIIIC_delta: Transcr 24.5 3.9E+02 0.0085 26.4 8.6 124 554-685 4-137 (173)
497 PF12894 Apc4_WD40: Anaphase-p 24.5 1.4E+02 0.0031 23.5 4.2 35 545-579 2-37 (47)
498 PRK10920 putative uroporphyrin 24.4 4.9E+02 0.011 29.8 10.2 70 69-138 58-128 (390)
499 PF11471 Sugarporin_N: Maltopo 24.4 94 0.002 25.9 3.3 39 98-136 21-59 (60)
500 KOG3156|consensus 24.2 8.5E+02 0.018 25.6 10.9 96 14-136 82-194 (220)
No 1
>KOG0612|consensus
Probab=100.00 E-value=3.8e-56 Score=517.89 Aligned_cols=595 Identities=23% Similarity=0.279 Sum_probs=469.8
Q ss_pred hhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhhHHHHH
Q psy3725 5 ASKAGQEFRVSDEKDARSYLQALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQSSLN 84 (760)
Q Consensus 5 ~~~~~i~qwv~dek~ar~ylq~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~lqsal~ 84 (760)
+.++||++||+|||+||+|+++|+++|++|+|+||+. +.++ ....|+.||++++++++.++||++|+
T Consensus 700 ~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d-----------~~~~--~~~~~~l~r~~~~~~~~vl~Lq~~LE 766 (1317)
T KOG0612|consen 700 AQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSND-----------YKQS--QEKLNELRRSKDQLITEVLKLQSMLE 766 (1317)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhh-----------hhhh--ccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999998 2233 37889999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhccCC-CC-CCCCccccccccccccc
Q psy3725 85 SEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLESGD-IL-ERPASQISYLDHFLKES 162 (760)
Q Consensus 85 ~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~~g~-~~-~~~~s~~~~~~~~~~~~ 162 (760)
+||+||+.++.||+ ++++++++ +.+|+|++++..++..+|+++++ +.....|. .+ .+++. .+.+.+...
T Consensus 767 qe~~~r~~~~~eLs-sq~~~~~t----~~~Ekq~~~~~~~l~~~K~~~e~-~~~q~~~~~~~~~~~~k---~lq~~leae 837 (1317)
T KOG0612|consen 767 QEISKRLSLQRELK-SQEQEVNT----KMLEKQLKKLLDELAELKKQLEE-ENAQLRGLNRSAWGQMK---ELQDQLEAE 837 (1317)
T ss_pred HHHHHhhhhHHHhh-hHHHhhcc----HHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccccchhhhH---HHHHHHHHH
Confidence 99999999999999 99999988 88999999999999999888876 32334444 11 12221 222222111
Q ss_pred ccccc---ccCCCC--CCCCC-CCCCc--ccccCCCcccccccccccccCCCCCCCceeEEeeecCCcccCCCccccccc
Q psy3725 163 RHTGS---VESEDG--DIEDN-RVPSI--ASSRSNLSELTIDQMNNMLRHDRSSKHHQFITRTFTSPTKCNHCTSLMVGL 234 (760)
Q Consensus 163 ~~~~~---~~~~~~--~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~H~F~~~~f~~pt~C~~C~~~i~Gl 234 (760)
..++. .+..+. ..++. +++-- ...+.+.|.--..+....-..+.....|.|....+..| ++.+.|.
T Consensus 838 ~~~~~~~ktq~~e~~e~~~ek~~~~~~er~~~~~Q~~~~~~~~~~~~la~~~ee~~~el~~e~~~~~------t~~~~g~ 911 (1317)
T KOG0612|consen 838 QCFSSLMKTQIIEDREEIAEKNQSLQAERMLLPKQVEQAVTKADSEQLARSLEERIEELEQEKISKK------TKDVLGL 911 (1317)
T ss_pred HHHHHHHHhhhhhhhhhhhhcccchhhhhhhcchhcchhhchhhhHHHhhhhhhHHHHHHHHHhhhh------HHHHHHH
Confidence 10000 000000 00000 00000 00000100000000000001112567899999988888 4567899
Q ss_pred ccCeeeecCCCcccccccccccCCCCCCCccCCCCCCCCCCCCCCCcceeeeeecccccccccceEEEEEEEeCcEEEEE
Q psy3725 235 TRQGVVCDICGFACHLSCCDKVPPSCPVPPDQTKRPLGIDPTRGIGTAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLY 314 (760)
Q Consensus 235 ~rQG~~C~~C~~~cH~kC~~~vp~~C~~p~~~~~~~~~id~~~~~Gt~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~y 314 (760)
.|||+.|.+|.+.||..|...++..|++++.+..++++. ++++++.+++++
T Consensus 912 hRqe~~~k~~t~ac~~e~~~~l~q~~~i~~~E~e~~~~~------------~~k~~~~~~~~~----------------- 962 (1317)
T KOG0612|consen 912 HRQELTCKDCTLACLEETNRTLTQKCKLLSEEKERLLGK------------HKKVQEEGVVLK----------------- 962 (1317)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhcCCchhhhhhhhhh------------hhhccchhhhhh-----------------
Confidence 999999999999999999999999999998887777554 678888877665
Q ss_pred ecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHH
Q psy3725 315 DISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVAL 394 (760)
Q Consensus 315 d~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L 394 (760)
+ .+.++ ||.+|++.+|+++|||||+.+|+|+||+++.+.+..+.. .+.+.|+.++.||+| +.+|
T Consensus 963 -----~-------~~i~~--~d~efs~~~~~e~~v~~aa~~kl~eif~r~~~~i~~~~~-~~t~~l~kkE~EkrK-v~~L 1026 (1317)
T KOG0612|consen 963 -----D-------EEIVL--RDAEFSKKLVTERDVKHAAVNKLAEIFNRKTSLIPGKKS-TNTLDLRKKEKEKRK-VMEL 1026 (1317)
T ss_pred -----h-------hhHhh--ccHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhccCCccc-ccHHHHHHHHHHHHH-HHHH
Confidence 1 12233 899999999999999999999999999999988865543 578899999999999 9999
Q ss_pred HHHHHHHhhcCCCCCceeeeeeeecCC---CCeeEEEEecCCCeEEEEEc--CCCCCCceEEcCCCCCeeEEEEecCCCe
Q psy3725 395 SELHRILKRNNLPNHTVSTPKIARVGD---TKKIYQMDYIPKEQLLVVLA--GKQRYVQIARVGDTKKIYQMDYIPEEQL 469 (760)
Q Consensus 395 ~~~~~~l~~~~~~~~~v~~~~e~~d~~---~~~i~Caa~~~~~rllvGTe--~l~~~~~l~rv~~~k~V~QI~Vi~e~~l 469 (760)
+.++.++.++.+++..+| +++|.+ +..+.|.+++|..++.||.. ++..-..+.+|++.+. .+..++
T Consensus 1027 ~qlr~~l~k~~l~~q~~~---d~~~~t~~~i~~~~~~~~id~~~~~I~~l~~~L~~~~~~~~v~~~~~------~e~e~~ 1097 (1317)
T KOG0612|consen 1027 SQLRTKLNKLRLKNQKEL---DLQAQTEESIRKILLQMIIDSKASEIEELRSKLYEINDSSSVGSQPE------DEAEQI 1097 (1317)
T ss_pred HHHHHHHHHHhhhhHHHH---HHHHhhhHHHHHHHHHHHHhhhHHHHHHHHhhhHHHhhhhhcccCCc------chhhcc
Confidence 999999999998888877 566654 78889999899999999988 3432226788988777 888999
Q ss_pred EEEEEC--CCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCccccee
Q psy3725 470 LVVLAG--KQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKR 547 (760)
Q Consensus 470 LlvLsg--k~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk 547 (760)
|.+++| ++++|+++|..++++ +..+.++..+++|+.|+++..+... +-.++++++| .+.+|+++++..++.+
T Consensus 1098 l~~l~~~~~eg~lsl~~~~~~~~-~~~~~~V~~s~~~~l~~~~~~~k~~-~~~~il~i~k----~~~v~~vt~~d~~~~~ 1171 (1317)
T KOG0612|consen 1098 LPLLQGSRLEGWLSLPPRQNLDR-DWKRIYVIVSSKKILFYVSEQDKEQ-SGPLILDIKK----LFHVRQVTQTDVRRAD 1171 (1317)
T ss_pred hhhhhhhhhhcccccCccccccc-chheeEEeecccceEeeeccccccc-cchhhhhhhh----ceeEEeecccccccch
Confidence 999999 889999999999999 5777999999999999999887653 3248899998 8999999999988999
Q ss_pred eeeEecCCcceEEEEecCceEEEEEcCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEE-EeC--CCeEEEEec
Q psy3725 548 LHEVILPTLAQCIHIFSEGRLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAI-ELP--RGEFLLVFH 624 (760)
Q Consensus 548 ~kE~~lP~~~~sl~~~~~~~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~-~l~--~~EfLLcy~ 624 (760)
.+|| |..++.|..+.+ . +|..++|..+++. +..+++++++.++|+.+.+.+..++. .+. -++|+|||.
T Consensus 1172 ~~ei--p~~fq~l~~~~~-~--~~~~~~f~~l~l~----~~~~v~~~~~~~~~l~~~~~~~~~~~k~l~~~~~~ye~~~~ 1242 (1317)
T KOG0612|consen 1172 AKEI--PRIFQILYANEG-E--SGHPSEFSYLSLG----PNSLVHKGHEFIPFLYHFPTNCEACIKPLWHMFKAYECRRC 1242 (1317)
T ss_pred hhhc--chhHHHHHhhcc-c--ccCccccchhhcc----chhhcCCCCcchHHHhhcchhHHHHhhhcccchhHHHHHHh
Confidence 9999 999998888866 4 9999999999994 67889999999999988776665333 231 239999999
Q ss_pred ceEEEEcCCCCcccccceecCCCCcEEEeeCCeEEEEeCCeeEEEECcCCcEEEEEecCCceecCCCCCEEEEecCCccE
Q psy3725 625 SLAAYVDSQGHKSREKEIMYPALPTGASYMDGQLLIFSETHVDVFNAESGDWLQTVNIRRALPLDTRGSLCFSLANDIPY 704 (760)
Q Consensus 625 ~~gvfVD~~G~rsR~~~I~W~~~P~~~ay~~PYLlvf~~~~IEVr~i~tg~lVQtI~~~~ir~L~s~G~l~l~s~~~~~~ 704 (760)
++++|+|..|+ ++|+.. .+++..+|++++.++..+ +.+|||+|..+..+++.+.|++.+++.++ .
T Consensus 1243 ~~~~~~d~~~k------~m~p~k--y~~~~a~~l~l~a~~~~d-----q~eWV~~l~k~~~k~~~~~~~~~~~s~~~--~ 1307 (1317)
T KOG0612|consen 1243 HIKCHKDHMDK------IMAPCK--YDTSSARHLLLLAESTED-----QAKWVQRLVKKIPKPLPAAGSFSRSSPRT--L 1307 (1317)
T ss_pred hcccccccccc------ccCccc--ccccCCccceeccCCchH-----HHHHHHHHhcccCCCCCcccceecccccc--c
Confidence 99999999999 999988 889999999999999988 89999999999999999999999999886 6
Q ss_pred EEEeecc
Q psy3725 705 VVYLANI 711 (760)
Q Consensus 705 ~~~~~~~ 711 (760)
+++.++.
T Consensus 1308 ~~~~s~~ 1314 (1317)
T KOG0612|consen 1308 KISLSQS 1314 (1317)
T ss_pred hhhhhhh
Confidence 6666654
No 2
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-44 Score=405.84 Aligned_cols=309 Identities=19% Similarity=0.296 Sum_probs=250.7
Q ss_pred CCcceEEEeeCCHHHHHHHHHHHHHHHHHHhhcCCCCCceeeeeeeecCCCCeeEEEEecCCCe-EEEEEc-CC------
Q psy3725 372 GTKNHTLMLADSDTEKTKWVVALSELHRILKRNNLPNHTVSTPKIARVGDTKKIYQMDYIPKEQ-LLVVLA-GK------ 443 (760)
Q Consensus 372 ~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~~~~~~~~~v~~~~e~~d~~~~~i~Caa~~~~~r-llvGTe-~l------ 443 (760)
+.++.++|||++...+++|+++++..|.+|+...+.-+. +.....|..+.+++||+...|.+| +++||. |+
T Consensus 808 ~~ry~itlYa~~~~g~d~~lE~i~nqQ~~l~~~t~~ft~-~~~~~~Ff~~~nkvn~v~~~dsgr~ll~~T~kglYis~~k 886 (1175)
T COG5422 808 GQRYQITLYAETHAGRDTWLEHIKNQQDILRTRTLWFTS-FPICDQFFSTTNKVNPVPLYDSGRKLLTGTNKGLYISNRK 886 (1175)
T ss_pred cccccccccccccchHHHHHHhhhhhhhhhhhhhhheee-ccchhheeeccceecceeeccCCCeEEEeccceeEEEEec
Confidence 446899999999999999999999999988766443222 222233333478999999888776 999999 42
Q ss_pred ---CCCCceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceee-c-CcccceEEEEeeeeCCCccc
Q psy3725 444 ---QRYVQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVK-I-PETKGCLSFTTGPLTHTRTQ 518 (760)
Q Consensus 444 ---~~~~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~k-l-~etKgc~~f~~g~~~~~~~~ 518 (760)
.+-..+++.....+|+||.|++|+++|+.|+| +.||.+||+.++.......| . ..+..+.||+.|.|.+.+
T Consensus 887 ~~~~~f~kpI~~l~~~nISQi~vieey~lmlllsd--k~LY~~pl~vid~~~~~~~kksr~~~~hvsffk~G~C~gk~-- 962 (1175)
T COG5422 887 DNVNRFNKPIDLLQEPNISQIIVIEEYKLMLLLSD--KKLYSCPLDVIDASTEENVKKSRIVNGHVSFFKQGFCNGKR-- 962 (1175)
T ss_pred cCcccccccHHHHhcCCcceeeehhhhhHHHHhhc--CeeecCccchhhhhhhhhhhhhhheeceeEEEeecccccce--
Confidence 12124455557789999999999999999998 69999999998875322211 1 135678899999999754
Q ss_pred eEEEEEEecC-CceEEEEEEec------CCcc---cc--eeeeeEecCCcceEEEEecCceEEEEEcCCeEEEEecCCCC
Q psy3725 519 HCLALAVKRQ-NSSQIILYEIT------RTKT---RH--KRLHEVILPTLAQCIHIFSEGRLCVGYQSGFSIYKFSQDNR 586 (760)
Q Consensus 519 ~~LcVAvKr~-~~~~Vl~ye~~------~~k~---~f--kk~kE~~lP~~~~sl~~~~~~~LcVG~~~gF~ivdl~~~~~ 586 (760)
|++|+|.. -.+++.+++.. ++.. .+ ..++|+++|.++.+++|+++ +|||||.+||+|++|+ +..
T Consensus 963 --lv~~~kS~~~~~~l~v~e~~~~~~~~~s~n~Kk~lt~~~~~el~v~~E~~sv~Flk~-KlcIgC~kgFeIvsle-~l~ 1038 (1175)
T COG5422 963 --LVCAVKSSSLSATLAVIEAPLALKKNKSGNLKKALTIELSTELYVPSEPLSVHFLKN-KLCIGCKKGFEIVSLE-NLR 1038 (1175)
T ss_pred --EEEeeeeheeeeeeeeecchhhhhcccCcchhhhhhhhheEEEEecCceeeeeeecc-ceEEeecCCceEeech-hhh
Confidence 55555542 26667777732 1111 11 12789999999999999999 9999999999999998 678
Q ss_pred ceeecCCCCCccccccc-CCCCceEEEEeCCCeEEEEecceEEEEcCCCCcccccc-eecCCCCcEEEeeCCeEEEEeCC
Q psy3725 587 PIPLIHQDNPLVSLLTY-SPVDALLAIELPRGEFLLVFHSLAAYVDSQGHKSREKE-IMYPALPTGASYMDGQLLIFSET 664 (760)
Q Consensus 587 ~~~Ll~~~d~sl~f~~~-~~~~pl~i~~l~~~EfLLcy~~~gvfVD~~G~rsR~~~-I~W~~~P~~~ay~~PYLlvf~~~ 664 (760)
.++|++|.|++..|... .+..|++|+++++ ||||||++||+|||.+||+.|+.+ +.|++.|+.||+.+|||++|.++
T Consensus 1039 ~esLL~paD~s~~~~~~ken~kpiai~rv~~-eFLLCys~faFfVN~~Gwrkrts~i~~Weg~Pq~FalsypYIlaf~~~ 1117 (1175)
T COG5422 1039 TESLLNPADTSPLFFEKKENTKPIAIFRVSG-EFLLCYSEFAFFVNDQGWRKRTSWIFHWEGEPQEFALSYPYILAFEPN 1117 (1175)
T ss_pred hHhhcCcccccHHHHhhcccCceEEEEeeCC-cEEEEecceeEEEcCcCceecccEEEEEcCccceeeeecceEEEecCc
Confidence 88999999988766655 5899999999965 999999999999999999999986 99999999999999999999999
Q ss_pred eeEEEECcCCcEEEEEecCCceecCC
Q psy3725 665 HVDVFNAESGDWLQTVNIRRALPLDT 690 (760)
Q Consensus 665 ~IEVr~i~tg~lVQtI~~~~ir~L~s 690 (760)
+||||+++||+|||+|-+.+||+|..
T Consensus 1118 fIeIr~ieTgeLI~~ilg~~IRlLt~ 1143 (1175)
T COG5422 1118 FIEIRHIETGELIRCILGHNIRLLTD 1143 (1175)
T ss_pred eEEEEecccceeeeeeccCceEEeec
Confidence 99999999999999999999999986
No 3
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=100.00 E-value=7.5e-43 Score=376.12 Aligned_cols=263 Identities=20% Similarity=0.341 Sum_probs=222.0
Q ss_pred eeEEEEecCCC--eEEEEEc-C-----CCCC-CceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccC----
Q psy3725 424 KIYQMDYIPKE--QLLVVLA-G-----KQRY-VQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDG---- 490 (760)
Q Consensus 424 ~i~Caa~~~~~--rllvGTe-~-----l~~~-~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~---- 490 (760)
+++|..+++.+ +||+||| | ++.. ..++++++.++|+||+|++++|+|++|+||.++|++|+|++|+.
T Consensus 2 ~~~~~~~~~~~~~~lL~GTe~Gly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~ 81 (302)
T smart00036 2 TAKWNHPITCDGKWLLVGTEEGLYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEA 81 (302)
T ss_pred CceEccccccCCcEEEEEeCCceEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhc
Confidence 46777777655 7999999 5 2331 48999999999999999999999999999999999999999984
Q ss_pred --------CCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeE-----ecCCcc
Q psy3725 491 --------DEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEV-----ILPTLA 557 (760)
Q Consensus 491 --------~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~-----~lP~~~ 557 (760)
.+..+.+++++|||+.|++++.+. ..++|+|+++ +|.+|++.+....|++++++ ..|.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~---~~~l~~A~~~----~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~ 154 (302)
T smart00036 82 LGSARLVIRKNVLTKIPDTKGCHLCAVVNGKR---SLFLCVALQS----SVVLLQWYNPLKKFKLFKSKFLFPLISPVPV 154 (302)
T ss_pred cCCccccccccceEeCCcCCceEEEEEEcCCC---cEEEEEEcCC----eEEEEEccChhhhhhhhcccccccCCCCccc
Confidence 122347999999999999886553 3599999988 77777776654457777764 234444
Q ss_pred eEEEE----ecCceEEEEEcC-CeEEEEecCCCCceeecCCCCCcccccccCCC-CceEEEEeCCCeEEEEecceEEEEc
Q psy3725 558 QCIHI----FSEGRLCVGYQS-GFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPV-DALLAIELPRGEFLLVFHSLAAYVD 631 (760)
Q Consensus 558 ~sl~~----~~~~~LcVG~~~-gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~-~pl~i~~l~~~EfLLcy~~~gvfVD 631 (760)
..+.. .++ +||||+.+ ||+++++. ..+++++|+|++|+.+... +|++|++++++|||||||++|+|||
T Consensus 155 ~~~~~~~~~~~~-~lcvG~~~~~~~~~~~~-----~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~~~v~Vn 228 (302)
T smart00036 155 FVELVSSSFERP-GICIGSDKGGGDVVQFH-----ESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYDEFGVFVN 228 (302)
T ss_pred eEeeecccccce-EEEEEEcCCCCeEEEEe-----ecccccccccccccccccccCceEEEEECCCeEEEEECcEEEEEe
Confidence 44432 244 99999998 99999995 2378899999999987654 9999999999999999999999999
Q ss_pred CCC-CcccccceecCCCCcEEEeeCCeEEEEeCCeeEEEECcCCcEEEEEe---cCCceecC-CCCCEEEEec
Q psy3725 632 SQG-HKSREKEIMYPALPTGASYMDGQLLIFSETHVDVFNAESGDWLQTVN---IRRALPLD-TRGSLCFSLA 699 (760)
Q Consensus 632 ~~G-~rsR~~~I~W~~~P~~~ay~~PYLlvf~~~~IEVr~i~tg~lVQtI~---~~~ir~L~-s~G~l~l~s~ 699 (760)
.+| +++|..+|+|++.|++++|.+|||++|++++||||++.||+|+|+|+ ++++|+|. +++.|++++.
T Consensus 229 ~~G~~~~r~~~l~w~~~p~~~~~~~pyll~~~~~~ievr~l~~~~l~q~i~~~~~~~~r~L~~~~~~I~~~s~ 301 (302)
T smart00036 229 LYGKRRSRNPILHWEFMPESFAYHSPYLLAFHDNGIEIRSIKTGELLQELADRETRKIRLLGSSDRKILLSSS 301 (302)
T ss_pred CCCCccccceEEEcCCcccEEEEECCEEEEEcCCcEEEEECCCCceEEEEecCCCcceEEEecCCCeEEEEec
Confidence 999 78888899999999999999999999999999999999999999997 89999999 7888888774
No 4
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=100.00 E-value=3.4e-41 Score=356.13 Aligned_cols=253 Identities=27% Similarity=0.439 Sum_probs=221.2
Q ss_pred EEEecCCCeEEEEEc-C-----CCCCCceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcc------
Q psy3725 427 QMDYIPKEQLLVVLA-G-----KQRYVQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVE------ 494 (760)
Q Consensus 427 Caa~~~~~rllvGTe-~-----l~~~~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~------ 494 (760)
|++ .++++|+|||+ | +.....+.++.+..+|+||.|+++.++|++|+| +.|++|+|+.|......
T Consensus 2 c~~-~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd--~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 2 CAD-SWGDRLLVGTEDGLYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSD--GQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred Ccc-cCCCEEEEEECCCEEEEEecCCccceeEeecceEEEEEEecccCEEEEEcC--CccEEEEchhhcccccccccccc
Confidence 665 47889999999 5 322357788888888999999999999999998 79999999998764421
Q ss_pred -----eeecCcccceEEEE-eeeeCCCccceEEEEEEecCCceEEEEEEecCCcccc-eeeeeEecCCcceEEEEecCce
Q psy3725 495 -----WVKIPETKGCLSFT-TGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRH-KRLHEVILPTLAQCIHIFSEGR 567 (760)
Q Consensus 495 -----~~kl~etKgc~~f~-~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~f-kk~kE~~lP~~~~sl~~~~~~~ 567 (760)
..++++++||++|+ .+...++. +||||+|| +|.+|++..+...| +.++||.+|++|++|.|+++ .
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~---~L~va~kk----~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~-~ 150 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSR---RLCVAVKK----KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGN-K 150 (275)
T ss_pred ccccccccccccCCeeEEeeccccccce---EEEEEECC----EEEEEEEECCcccccceeEEEEcCCCcEEEEEeCC-E
Confidence 24889999999999 44444333 89999999 88888887765567 89999999999999999977 9
Q ss_pred EEEEEcCCeEEEEecCCCCceeecCCCCCccccccc-CCCCceEEEEeCCCeEEEEecceEEEEcCCCCcccccceecCC
Q psy3725 568 LCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTY-SPVDALLAIELPRGEFLLVFHSLAAYVDSQGHKSREKEIMYPA 646 (760)
Q Consensus 568 LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~-~~~~pl~i~~l~~~EfLLcy~~~gvfVD~~G~rsR~~~I~W~~ 646 (760)
||||+.++|.++|+. ++.+.++++++++++.+... ....|+.+++++++|||||||++|+|||.+|+++|...|+|++
T Consensus 151 i~v~~~~~f~~idl~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G~~~r~~~i~W~~ 229 (275)
T PF00780_consen 151 ICVGTSKGFYLIDLN-TGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNGEPSRKSTIQWSS 229 (275)
T ss_pred EEEEeCCceEEEecC-CCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCCCcCcccEEEcCC
Confidence 999999999999998 78889999888877555433 4788999999999999999999999999999999987899999
Q ss_pred CCcEEEeeCCeEEEEeCCeeEEEECcCCcEEEEEecCCceecCCC
Q psy3725 647 LPTGASYMDGQLLIFSETHVDVFNAESGDWLQTVNIRRALPLDTR 691 (760)
Q Consensus 647 ~P~~~ay~~PYLlvf~~~~IEVr~i~tg~lVQtI~~~~ir~L~s~ 691 (760)
.|++++|.+|||+++++++||||++.+|+++|+|+++++|+|+++
T Consensus 230 ~p~~~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~~~~l~~~ 274 (275)
T PF00780_consen 230 APQSVAYSSPYLIAFSSNSIEVRSLETGELVQTIPLPNIRLLCSG 274 (275)
T ss_pred chhEEEEECCEEEEECCCEEEEEECcCCcEEEEEECCCEEEEecC
Confidence 999999999999999999999999999999999999999999874
No 5
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=100.00 E-value=4.1e-39 Score=293.47 Aligned_cols=122 Identities=70% Similarity=1.119 Sum_probs=119.0
Q ss_pred CcceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccce
Q psy3725 280 GTAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPC 359 (760)
Q Consensus 280 Gt~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~ 359 (760)
||+|||||++|++++.++||+|+|++||++|||+||.++++..+|...++++|||||++|+|++|+++|||||+++||||
T Consensus 1 gt~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~ 80 (122)
T cd01243 1 GTAYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPC 80 (122)
T ss_pred CccceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCe
Confidence 79999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHH
Q psy3725 360 IFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRIL 401 (760)
Q Consensus 360 if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l 401 (760)
||+||++++++|+++++++|||+|++||+|||.+|+|+|++|
T Consensus 81 If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l~~~l 122 (122)
T cd01243 81 IFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSELHKIL 122 (122)
T ss_pred EEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999975
No 6
>KOG4305|consensus
Probab=100.00 E-value=6.2e-34 Score=334.81 Aligned_cols=312 Identities=18% Similarity=0.296 Sum_probs=237.9
Q ss_pred cceEEEeeCCHHHHHHHHHHHHHHHHHH-hhcCCCCCceeeeeeeecCCCCeeEEEEecCCCe-EEEEEc-CC---CC--
Q psy3725 374 KNHTLMLADSDTEKTKWVVALSELHRIL-KRNNLPNHTVSTPKIARVGDTKKIYQMDYIPKEQ-LLVVLA-GK---QR-- 445 (760)
Q Consensus 374 ~~~l~LlA~S~~ek~kWv~~L~~~~~~l-~~~~~~~~~v~~~~e~~d~~~~~i~Caa~~~~~r-llvGTe-~l---~~-- 445 (760)
+++++++|+|..+++.|+++|..++... .+++.....-....-.. .+++++....++.+ +++||. |+ ..
T Consensus 662 ~~~ftly~~s~~~r~~w~ekI~~aq~~~le~~~~~~~~~~~~~s~~---~nk~n~~~~~~~~~~~l~~~~~G~~~s~~~~ 738 (1029)
T KOG4305|consen 662 GASFTLYAESLNGRDQWVEKIKQAQKRSLERNDVFNFQQWKVQFFF---DNKVNEPVICDGGRIDLFGTNEGLYVSNRKT 738 (1029)
T ss_pred ceEEEeeccchHHhhhHHhhhhHHHHhhhhhhcccchheeeeeccc---cccccceeeccCcchhccccccceEEeehhh
Confidence 5789999999999999999999998864 44443332222222211 35788888778777 678887 42 11
Q ss_pred C-----CceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCc--ceeecCcc---cceEEEEeeeeCCC
Q psy3725 446 Y-----VQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEV--EWVKIPET---KGCLSFTTGPLTHT 515 (760)
Q Consensus 446 ~-----~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~--~~~kl~et---Kgc~~f~~g~~~~~ 515 (760)
. ..++.+ ...+|+||+|+++.++++++.+ +.|+.++++.++..+. .......+ +...+|+.|.+.|.
T Consensus 739 ~~~~~~~~~~~~-~~~~i~q~~v~ee~~~l~~l~d--k~Ly~~~l~~~~ae~~~~~~~~~~~~vl~~~v~~fk~g~~~gk 815 (1029)
T KOG4305|consen 739 SYGIPVGPIVKL-QKNNISQIEVNEESKLLLLLID--KKLYYCPLSMIDAEGNIASKTSREETVLRRHVDFFKEGDCKGK 815 (1029)
T ss_pred cCCccccchhhh-hccchhhhhhhhhccceeeehh--hHHhhCCcceeeeccccccccccccchhhhhhhhhhcccccCc
Confidence 1 122333 3348999999999999999998 6899999987765321 11222222 35678999999874
Q ss_pred ccceEEEEEEec-CCceEEEEEEe------cCC-----cccceeeeeEecCCcceEEEEecCceEEEEEcCCeEEEEecC
Q psy3725 516 RTQHCLALAVKR-QNSSQIILYEI------TRT-----KTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSGFSIYKFSQ 583 (760)
Q Consensus 516 ~~~~~LcVAvKr-~~~~~Vl~ye~------~~~-----k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~gF~ivdl~~ 583 (760)
. +|+|++. .-..+|.+|+. +.+ ++..+.+.|+.+|.++.+++|+++ ++||||.+||+++++.
T Consensus 816 ~----~v~~~~~~~l~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~s~~flk~-k~~v~~~k~f~i~sl~- 889 (1029)
T KOG4305|consen 816 I----LVCAVKSSVLGNTVKIFEFLLVISNPASGNELKKFLKVGLTDFFVDSEPVSVSFLKN-KLCVGCKKGFEIVSLS- 889 (1029)
T ss_pred e----EEEEEeeccCCceEEEEechhhhcCCcchhhhhhhhhccchhccccccchhHhHhcc-ceeeeecCCCceeccc-
Confidence 4 4445544 22445555552 111 233455889999999999999999 9999999999999997
Q ss_pred CCCceeecCCCCCcccccc-cCCCCceEEEEeCCCeEEEEecceEEEEcCCCCcccccc-eecCCCCcEEEeeCCeEEEE
Q psy3725 584 DNRPIPLIHQDNPLVSLLT-YSPVDALLAIELPRGEFLLVFHSLAAYVDSQGHKSREKE-IMYPALPTGASYMDGQLLIF 661 (760)
Q Consensus 584 ~~~~~~Ll~~~d~sl~f~~-~~~~~pl~i~~l~~~EfLLcy~~~gvfVD~~G~rsR~~~-I~W~~~P~~~ay~~PYLlvf 661 (760)
....+.|+++.|.+.-|.. ..+..|++||+|++ ||||||+++|||||.+||++|+.. |.|++.|..||..+|||++|
T Consensus 890 ~~~~~~l~~~~~~~~~~~~~~~~~kp~~ifri~~-~Fllcy~~~~f~vn~~G~~~~~~~~~~w~g~p~~~a~~~~yiia~ 968 (1029)
T KOG4305|consen 890 NKTAESLLNPADNSPLFFEKRENTKPVAIFRISG-EFLLCYDEFAFFVNDQGWRSRTSWIFLWEGEPQEFALSYPYIIAF 968 (1029)
T ss_pred hhhhhccCCCccchHHHHhhhccCceeEEEEecC-eEEEEecceEEEEcCCcceecccEEEEEcCccceeeeecceEEEe
Confidence 5566778999887665544 45899999999976 999999999999999999999984 99999999999999999999
Q ss_pred eCCeeEEEECcCCcEEEEEecCCceecCC-------CCCEEEEe
Q psy3725 662 SETHVDVFNAESGDWLQTVNIRRALPLDT-------RGSLCFSL 698 (760)
Q Consensus 662 ~~~~IEVr~i~tg~lVQtI~~~~ir~L~s-------~G~l~l~s 698 (760)
.+++||||+++||+|+|+|.+++||++.+ +|.++++.
T Consensus 969 ~~~fIeI~~~~t~eli~~i~~~~Ir~~~~~~~~l~~~~~~~~~~ 1012 (1029)
T KOG4305|consen 969 GDNFIEIRDLETGELIQIILGQNIRLLTSGLGPLLHGGKIIYYC 1012 (1029)
T ss_pred cCceEEEEecccceeeEEeeccceeEeecCcccccCCCeEEEEE
Confidence 99999999999999999999999999987 55555544
No 7
>KOG0976|consensus
Probab=99.98 E-value=3.2e-34 Score=320.51 Aligned_cols=450 Identities=14% Similarity=0.095 Sum_probs=330.6
Q ss_pred CCCCCceeEEeeecCCcccCCCcccccccc------cCeeeecCCCcccccccccccC----------CCCCCCccCCCC
Q psy3725 206 RSSKHHQFITRTFTSPTKCNHCTSLMVGLT------RQGVVCDICGFACHLSCCDKVP----------PSCPVPPDQTKR 269 (760)
Q Consensus 206 ~~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~------rQG~~C~~C~~~cH~kC~~~vp----------~~C~~p~~~~~~ 269 (760)
+....|+|.++..++-|.|..|.+. ..+. ++..+|..|.++||++|...+| +.|+.+...+..
T Consensus 585 ~~kIee~kr~w~nsret~erl~let-~~~e~k~~k~eeelqek~~qVme~~elvtyL~sqi~~kqtkqpklgrrstl~st 663 (1265)
T KOG0976|consen 585 HHKIEERKRVWLNSRETKERLCLET-VHFEDKLDKLEEELQEKECQVMEHPELVTYLPSQIDAKQTKQPKLGRRSTLAST 663 (1265)
T ss_pred HhhhHHHHhhhhhhHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHHHhccHHHHhhchhhhchhcccCCccCChHHHHHH
Confidence 3467899999999999999999885 4666 7889999999999999999999 888887765432
Q ss_pred CC---CCCC---------CCCCCcceeeeeecccc---cc-cccceEEE---EEEEeCcEEEEEecCCCCCCCCccceeE
Q psy3725 270 PL---GIDP---------TRGIGTAYEGYVKVPKT---GG-VKKGWVRQ---FVVVCDFKLFLYDISPDRNALPAVYVSL 330 (760)
Q Consensus 270 ~~---~id~---------~~~~Gt~~eG~vkvp~~---~~-~kkgw~r~---~~~l~~~kL~~yd~~~~~~~~p~~~~~~ 330 (760)
.. +.|- -+.....++||+.+|+. .+ ..+||.++ +.++++.|..+|+........ -..+.+
T Consensus 664 ~sE~dts~ymre~eevraleeqr~~Le~~laekR~~~d~kksqstantti~~tt~tE~SKsa~els~~~~tmr-hdiphk 742 (1265)
T KOG0976|consen 664 FSEADTSDYMREPEEVRALEEQRLHLEGWLAEKRNLADNKKSQSTANTTITSTTVTEGSKSAIELSEARETMR-HDIPHK 742 (1265)
T ss_pred HHHHHHHHhhcCHHhhhcchhhHHHHHHHHhhhhhhhhhhcccccccceeeEEEeeechHHHHhcccchhhcc-CCCchh
Confidence 21 1111 12233568999999987 22 45799999 999999999999876543322 224678
Q ss_pred EeecCCCCeEEEeeccCcccccCCCccceeeeeecccC--CCCCCcceEEEeeCCHHHHHHHHHHHHHHHHH---Hh--h
Q psy3725 331 VLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLM--DPPGTKNHTLMLADSDTEKTKWVVALSELHRI---LK--R 403 (760)
Q Consensus 331 ~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l--~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~---l~--~ 403 (760)
.+++|++++.......+.|-.++..|.|+|.+.....+ |||-.+.+++|.|++++.+++|+.+++.+-+. ++ +
T Consensus 743 wl~frh~~Vlsmkcslcfvgitafaka~kcshcdvhvHasCaPrvnnTcglpaqcatyyq~w~~a~~gVgrmnGwlRVyR 822 (1265)
T KOG0976|consen 743 WLCFRHGDVLSMKCSLCFVGITAFAKAPKCSHCDVHVHASCAPRVNNTCGLPAQCATYYQRWVTALEGVGRMNGWLRVYR 822 (1265)
T ss_pred hhccccCCeeecchhHhhhhhHHhhcCcccccccccccccccCCCCCcccccccccchHHHHHHHhhhhhhcccceeeec
Confidence 99999999888654478899999999999999976655 67644688999999999999999999998442 11 1
Q ss_pred cCCCCCceeeeeeeecCC---CCeeEEEEecCCCeEEEEEc-C-----CCCCCceEEcCCCCCeeEEEEecCCCeEEEEE
Q psy3725 404 NNLPNHTVSTPKIARVGD---TKKIYQMDYIPKEQLLVVLA-G-----KQRYVQIARVGDTKKIYQMDYIPEEQLLVVLA 474 (760)
Q Consensus 404 ~~~~~~~v~~~~e~~d~~---~~~i~Caa~~~~~rllvGTe-~-----l~~~~~l~rv~~~k~V~QI~Vi~e~~lLlvLs 474 (760)
.+.+..+-+.--.+.|.. .-..+||.++.+..++||++ + +-++ .+++|+|..+|.||.+|.....+++|+
T Consensus 823 dd~~~stwl~~wammdl~~~~fy~~~gadple~p~f~idlnkeqw~Lrtgqe-~~~~v~dimrvfnvliIK~~~r~l~I~ 901 (1265)
T KOG0976|consen 823 DDAEASTWLLGWAMMDLEGDDFYDMNGADPLEDPVFLIDLNKEQWALRTGQE-SLTHVPDIMRVFNVLIIKDLERLLMIA 901 (1265)
T ss_pred cccchhHHHHHHHHhhhcccchhhccCCccccCceEEeecchhHHHHHhccc-cccCCcchhhhheeeeecchhhhheee
Confidence 111111000000111111 44568999988888999999 3 3455 889999999999999999999999999
Q ss_pred C------CCCeEEEEECCC----ccC------CCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEe
Q psy3725 475 G------KQRYVRLVPVRA----LDG------DEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEI 538 (760)
Q Consensus 475 g------k~r~L~l~~L~~----L~~------~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~ 538 (760)
| ..+.+|+.+... |.. ++.-+..++-.+||+.|..|.+.++- |+|.++ +..++++-|.
T Consensus 902 ap~~~saerwA~CLq~aqk~rmmlnsk~ssiae~~cllil~apnnlkiFkA~tIEdwi---lfatqt--glfftsisqp- 975 (1265)
T KOG0976|consen 902 APSPKSAERWALCLQDAQKVRMMLNSKHSSIAEDICLLILEAPNNLKIFKAGTIEDWI---LFATQT--GLFFTSISQP- 975 (1265)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHhccCCCCcccchhhHHHhccccceeecccccccce---eEeecC--CceEEEeecC-
Confidence 8 323344333221 111 12223566677999999999999865 667666 3355555555
Q ss_pred cCCcccceeeeeEecCCcceEEEEecCceEEEEEcCCeEEEEecCCCCceeecCCCCCccc---ccccCCCCceEEEEeC
Q psy3725 539 TRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVS---LLTYSPVDALLAIELP 615 (760)
Q Consensus 539 ~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~---f~~~~~~~pl~i~~l~ 615 (760)
+|-..+.--+++.--++..+|+|. +-||..+ |++.+|. ..+....++..|||++ |..+++++|+.+.+.+
T Consensus 976 -rNpsriagp~svtslE~mseI~cv----amI~ns~-~qla~ip-ldsL~lamqst~pSirpeVlpef~hvh~i~yhQqn 1048 (1265)
T KOG0976|consen 976 -RNPSRIAGPKSVTSLEPMSEIHCV----AMIGNSK-FQLADIP-LDSLELAMQSTDPSIRPEVLPEFSHVHPISYHQQN 1048 (1265)
T ss_pred -CCchhhcCccccccccccceeeEE----EEEecCc-ceeecCc-hhHHHHHHhcCCCccchhhhhhhcCcceeEEEEec
Confidence 443334445667766777777776 4566665 6667774 3344556788999996 4456789999999986
Q ss_pred CC----eEEEEecceEEEEcCCCCcccccceecCCCCcEEEeeCCeEEEEeCCeeEEEECc
Q psy3725 616 RG----EFLLVFHSLAAYVDSQGHKSREKEIMYPALPTGASYMDGQLLIFSETHVDVFNAE 672 (760)
Q Consensus 616 ~~----EfLLcy~~~gvfVD~~G~rsR~~~I~W~~~P~~~ay~~PYLlvf~~~~IEVr~i~ 672 (760)
.. ++++||.+|++|+|..|+.+|...++|| .|.+|+|..||+|+|..+..++..+.
T Consensus 1049 gqrfll~sddt~lh~rkyn~trd~fs~~akl~vp-ePlsFies~P~gfifa~dtfyyv~ld 1108 (1265)
T KOG0976|consen 1049 GQRFLLESDDTFLHFRKYNDTRDRFSRTAKLKVP-EPLSFIESEPYGFIFAFDTFYYVELD 1108 (1265)
T ss_pred ccchhhhhhhhHHHHhhhcccchhhhhcccccCC-CchhhhhcCcceEEEecceEEEEeec
Confidence 54 4556888999999999999999999999 99999999999999999999888876
No 8
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.96 E-value=5.4e-29 Score=224.16 Aligned_cols=104 Identities=35% Similarity=0.603 Sum_probs=94.6
Q ss_pred eeeeeeccccccc--ccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 283 YEGYVKVPKTGGV--KKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 283 ~eG~vkvp~~~~~--kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
|||||++|++++. ++||+|+|++||++||++||.+.+++.++ |+++|||++ .|+|++|+++|||||+++|+|||
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~---p~~vldl~~-~fhv~~V~asDVi~a~~kDiP~I 77 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENST---PSMILDIDK-LFHVRPVTQGDVYRADAKEIPKI 77 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCC---cEEEEEccc-eeeeecccHHHeeecCcccCCeE
Confidence 7999999999988 67999999999999999999999886654 788999965 99999999999999999999999
Q ss_pred eeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHH
Q psy3725 361 FRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALS 395 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~ 395 (760)
|+|+... .+++++|||+|+.||+|||.+|-
T Consensus 78 F~I~~~~-----~~~~lllLA~s~~ek~kWV~~L~ 107 (112)
T cd01242 78 FQILYAN-----EARDLLLLAPQTDEQNKWVSRLV 107 (112)
T ss_pred EEEEeCC-----ccceEEEEeCCchHHHHHHHHHH
Confidence 9998742 24789999999999999999974
No 9
>KOG0976|consensus
Probab=99.91 E-value=2.5e-25 Score=249.70 Aligned_cols=452 Identities=17% Similarity=0.276 Sum_probs=312.7
Q ss_pred CCCceeEEeeec--CCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCCccCCCCCCC-CCCCCCCCccee
Q psy3725 208 SKHHQFITRTFT--SPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPPDQTKRPLG-IDPTRGIGTAYE 284 (760)
Q Consensus 208 ~~~H~F~~~~f~--~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p~~~~~~~~~-id~~~~~Gt~~e 284 (760)
+.+|.+...... ....|..|.--+- .....-+|..|..-+|..|++.|..+|++|..+...... +....|. ..|.
T Consensus 738 diphkwl~frh~~Vlsmkcslcfvgit-afaka~kcshcdvhvHasCaPrvnnTcglpaqcatyyq~w~~a~~gV-grmn 815 (1265)
T KOG0976|consen 738 DIPHKWLCFRHGDVLSMKCSLCFVGIT-AFAKAPKCSHCDVHVHASCAPRVNNTCGLPAQCATYYQRWVTALEGV-GRMN 815 (1265)
T ss_pred CCchhhhccccCCeeecchhHhhhhhH-HhhcCcccccccccccccccCCCCCcccccccccchHHHHHHHhhhh-hhcc
Confidence 455655543322 2458888864332 244578899999999999999999999999876543211 1111233 3589
Q ss_pred eeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEe-----eccCcccccCCCccce
Q psy3725 285 GYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSG-----VRESDVIHATKKDIPC 359 (760)
Q Consensus 285 G~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~-----V~~sdvi~a~~~dip~ 359 (760)
||++|++.......|.--|+.++-.+.-+||..++. |.-.+.+.||+..+.|.+.- +...|++.+..- +
T Consensus 816 GwlRVyRdd~~~stwl~~wammdl~~~~fy~~~gad---ple~p~f~idlnkeqw~Lrtgqe~~~~v~dimrvfnv---l 889 (1265)
T KOG0976|consen 816 GWLRVYRDDAEASTWLLGWAMMDLEGDDFYDMNGAD---PLEDPVFLIDLNKEQWALRTGQESLTHVPDIMRVFNV---L 889 (1265)
T ss_pred cceeeeccccchhHHHHHHHHhhhcccchhhccCCc---cccCceEEeecchhHHHHHhccccccCCcchhhhhee---e
Confidence 999999988888899999999998888899987765 33346789999999998842 222333333222 2
Q ss_pred eeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHH-HhhcCCC----CCceeeeeeeecCCCCeeEEEEecCCC
Q psy3725 360 IFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRI-LKRNNLP----NHTVSTPKIARVGDTKKIYQMDYIPKE 434 (760)
Q Consensus 360 if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~-l~~~~~~----~~~v~~~~e~~d~~~~~i~Caa~~~~~ 434 (760)
|++. +...+++.|||.....+|...|..+++. ++.|... +..+..+.++.. ..+|.-|. .-++
T Consensus 890 iIK~---------~~r~l~I~ap~~~saerwA~CLq~aqk~rmmlnsk~ssiae~~cllil~apn--nlkiFkA~-tIEd 957 (1265)
T KOG0976|consen 890 IIKD---------LERLLMIAAPSPKSAERWALCLQDAQKVRMMLNSKHSSIAEDICLLILEAPN--NLKIFKAG-TIED 957 (1265)
T ss_pred eecc---------hhhhheeecCCCccHHHHHHHHHHHHHHHHHhccCCCCcccchhhHHHhccc--cceeeccc-cccc
Confidence 3232 2456899999999999999999999985 3333211 111222222222 12222222 2367
Q ss_pred eEEEEEc-C-----CCCCCceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccC------CCcceeecCccc
Q psy3725 435 QLLVVLA-G-----KQRYVQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDG------DEVEWVKIPETK 502 (760)
Q Consensus 435 rllvGTe-~-----l~~~~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~------~~~~~~kl~etK 502 (760)
+|++.|. | +..++.+.++.+.+.|+-++++.+.+.+++|.....++...|++.|.. +.+.+..+++..
T Consensus 958 wilfatqtglfftsisqprNpsriagp~svtslE~mseI~cvamI~ns~~qla~ipldsL~lamqst~pSirpeVlpef~ 1037 (1265)
T KOG0976|consen 958 WILFATQTGLFFTSISQPRNPSRIAGPKSVTSLEPMSEIHCVAMIGNSKFQLADIPLDSLELAMQSTDPSIRPEVLPEFS 1037 (1265)
T ss_pred ceeEeecCCceEEEeecCCCchhhcCccccccccccceeeEEEEEecCcceeecCchhHHHHHHhcCCCccchhhhhhhc
Confidence 8999998 4 344567889999999999999999999999998778999999987642 345678889999
Q ss_pred ceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEcCCeEEEEec
Q psy3725 503 GCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSGFSIYKFS 582 (760)
Q Consensus 503 gc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~gF~ivdl~ 582 (760)
++|.+.....++.+ ++.+..-. -+.+-+|.-++ ..|..+-.|.+|.|+..+---+. .++.+|+ .|+.+.|+
T Consensus 1038 hvh~i~yhQqngqr---fll~sddt--~lh~rkyn~tr--d~fs~~akl~vpePlsFies~P~-gfifa~d-tfyyv~ld 1108 (1265)
T KOG0976|consen 1038 HVHPISYHQQNGQR---FLLESDDT--FLHFRKYNDTR--DRFSRTAKLKVPEPLSFIESEPY-GFIFAFD-TFYYVELD 1108 (1265)
T ss_pred CcceeEEEEecccc---hhhhhhhh--HHHHhhhcccc--hhhhhcccccCCCchhhhhcCcc-eEEEecc-eEEEEeec
Confidence 99999888888755 44444321 22344565444 45677888999977432222223 5566666 68899996
Q ss_pred CCC----CceeecCCCCCcccccccCCCCceEEEEeCCCeEEEEecceEEEEcCCCCcccccceecCCCCcEEEeeCCeE
Q psy3725 583 QDN----RPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVFHSLAAYVDSQGHKSREKEIMYPALPTGASYMDGQL 658 (760)
Q Consensus 583 ~~~----~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~~~gvfVD~~G~rsR~~~I~W~~~P~~~ay~~PYL 658 (760)
... ++.-+++|.. +-.|..++-++.+|+||.|.+.|+|||.+|..+|...|.|+..|..|+|..|++
T Consensus 1109 hqsss~vsARklm~p~~---------~~yp~sA~si~anelllaYQnkGifVnl~Geqsrn~siewekmp~ef~Ytspil 1179 (1265)
T KOG0976|consen 1109 HQSSSGVSARKLMDPPN---------PRYPGSAISIGANELLLAYQNKGIFVNLSGEQSRNTSIEWEKMPGEFTYTSPIL 1179 (1265)
T ss_pred ccCCCCCchhhhcCCCC---------CCCCcchhhccHHHHHHHhhccCeEEecccccCCccccccccCCCCccccCceE
Confidence 221 1123444432 345666777788999999999999999999999999999999999999999999
Q ss_pred EEEeCCeeEEEECcCCc---------EEEEEecCCceecCCCCCEEEEe
Q psy3725 659 LIFSETHVDVFNAESGD---------WLQTVNIRRALPLDTRGSLCFSL 698 (760)
Q Consensus 659 lvf~~~~IEVr~i~tg~---------lVQtI~~~~ir~L~s~G~l~l~s 698 (760)
..++++.|||.-++... .+-..+ ..++|+-.+|.++-.+
T Consensus 1180 yiVhddsiei~~is~ss~~tvlaeRt~l~cvn-ah~~plq~egvlisvs 1227 (1265)
T KOG0976|consen 1180 YIVHDDSIEIHPISPSSPHTVLAERTELRCVN-AHGRPLQREGVLISVS 1227 (1265)
T ss_pred EEeccCCccccccCCCCchhhhhhhhheeeec-CCCCcccccCcceeee
Confidence 99999999998886442 222222 2256677777766544
No 10
>KOG2063|consensus
Probab=99.75 E-value=6.5e-18 Score=199.76 Aligned_cols=253 Identities=15% Similarity=0.193 Sum_probs=194.9
Q ss_pred EEEecCCCeEEEEEc-C-C-----CCC------------CceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCC
Q psy3725 427 QMDYIPKEQLLVVLA-G-K-----QRY------------VQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRA 487 (760)
Q Consensus 427 Caa~~~~~rllvGTe-~-l-----~~~------------~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~ 487 (760)
|.+ .+++.|++||. | + ..+ ..+.+..+.|+|.+|.+++.++++++|+| +.+.+|.+..
T Consensus 21 ~va-~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~d--sqi~~~~l~~ 97 (877)
T KOG2063|consen 21 CVA-AYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILSD--SQIAVHKLPE 97 (877)
T ss_pred HHH-HhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheecC--CcceeeecCc
Confidence 655 47888999999 3 1 110 12233345799999999999999999998 6889999987
Q ss_pred ccCCCcceeecCcccceEEEEeeeeC--CCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecC
Q psy3725 488 LDGDEVEWVKIPETKGCLSFTTGPLT--HTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSE 565 (760)
Q Consensus 488 L~~~~~~~~kl~etKgc~~f~~g~~~--~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~ 565 (760)
+.+ .....+.||+..|+..... ++.....+|++++| .+..|.++. ...+...+|+.+|..+.++.|...
T Consensus 98 ~~~----~~~~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k----~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~ 168 (877)
T KOG2063|consen 98 LEP----VPSGTRLKGASLFTIDLRPISTGPSVYEICLSVRK----RLIRFFWNG-RDGIVLVKELGFPDVPKARAWCGH 168 (877)
T ss_pred ccc----cccccccccceeeccccccccCCcceEEEEeeccc----eEEEEEecC-CCceEEEEecccccchhhhcccce
Confidence 776 3455678999999875443 23235688988766 455555443 345778899999999999999988
Q ss_pred ceEEEEEcCCeEEEEecCCCCceeecCCCCCccccccc-CCCCceEEEEeCCC-eEEEEecceEEEEcCCCCccccccee
Q psy3725 566 GRLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTY-SPVDALLAIELPRG-EFLLVFHSLAAYVDSQGHKSREKEIM 643 (760)
Q Consensus 566 ~~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~-~~~~pl~i~~l~~~-EfLLcy~~~gvfVD~~G~rsR~~~I~ 643 (760)
-+|+|..+.+.++..++++....+.. ... .-..|..|..+.++ ++++|.|+.|+|||.+|...-...+.
T Consensus 169 -~~c~~~~~~~~ii~~~~~~~~~~~~~--------s~~~~~s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~l~ 239 (877)
T KOG2063|consen 169 -IVCLGLKKSYYIINNTSKGVGPNLFP--------SSMDNESRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGTLV 239 (877)
T ss_pred -eEEEeecceeEEEecCCCccccceee--------eccccccCCCeEEEecCCceEEEccCceEEEEecCCcccCCCceE
Confidence 99999999899999975542222111 011 12456678888888 99999999999999999995455899
Q ss_pred cCCCCcEEEeeCCeEEEEeCCeeEEEECcCCcEEEEE-ecCCceecCC--CCCEEEEecC
Q psy3725 644 YPALPTGASYMDGQLLIFSETHVDVFNAESGDWLQTV-NIRRALPLDT--RGSLCFSLAN 700 (760)
Q Consensus 644 W~~~P~~~ay~~PYLlvf~~~~IEVr~i~tg~lVQtI-~~~~ir~L~s--~G~l~l~s~~ 700 (760)
|+..|.++++..|||++.++.+||||++.++.+||+| +.++++.+.+ .|.+|.++..
T Consensus 240 ws~~P~~v~~~~PYlIa~~~~~veI~s~~~~qlvQSI~~~~~~~~l~s~~~~i~~~~~~s 299 (877)
T KOG2063|consen 240 WSEVPLSVVVESPYLIALLDRSVEIRSKLDGQLVQSITPLSNGRSLLSAHNGIIFVASLS 299 (877)
T ss_pred ecccchhhcccCceEEEEccccEEEEeccCHHHhhccccccccceeeecCCcEEEEEecc
Confidence 9999999999999999999999999999999999999 9999887764 5666666644
No 11
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=99.74 E-value=7.2e-18 Score=137.86 Aligned_cols=60 Identities=32% Similarity=0.482 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 78 NLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 78 ~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
|||||||+||||||.|+|||+++|++|+++|++|+|+++||++|.+||++|+++++++++
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 799999999999999999999999999999999999999999999999999999999874
No 12
>KOG0696|consensus
Probab=99.60 E-value=3.7e-16 Score=168.20 Aligned_cols=117 Identities=31% Similarity=0.583 Sum_probs=97.8
Q ss_pred CCCCCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCCccCCCCCCCCCC--------
Q psy3725 204 HDRSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPPDQTKRPLGIDP-------- 275 (760)
Q Consensus 204 ~~~~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p~~~~~~~~~id~-------- 275 (760)
..+..++|+|.++.|++||+|+||.+||||+++||++|++|.|++|++|++.|...||... +++-..||
T Consensus 39 nvhevk~HkF~aRFFKqPTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChefVtF~CPGad---kg~dtDdpr~kHkf~~ 115 (683)
T KOG0696|consen 39 NVHEVKSHKFIARFFKQPTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGAD---KGPDTDDPRSKHKFKI 115 (683)
T ss_pred chhhhccceeeehhccCCchhhhhhhheeccccCceeeeEEeehhhhhhcceEEEECCCCC---CCCCCCCcccccceee
Confidence 4567899999999999999999999999999999999999999999999999999998743 22222222
Q ss_pred --------CCCCCcceeeee-------------------eccccccc----ccceEEEEEEEeCcEEEEEecCCCCCCCC
Q psy3725 276 --------TRGIGTAYEGYV-------------------KVPKTGGV----KKGWVRQFVVVCDFKLFLYDISPDRNALP 324 (760)
Q Consensus 276 --------~~~~Gt~~eG~v-------------------kvp~~~~~----kkgw~r~~~~l~~~kL~~yd~~~~~~~~p 324 (760)
.++||+.++|.+ .||..||. ++|....++.+.+.. +..++.+++|..|
T Consensus 116 ~tYssPTFCDhCGsLLyGl~HQGmKC~~C~mNVH~rCv~nVPslCG~DhtE~RGrl~l~~~~~~~~-l~v~i~ea~NLiP 194 (683)
T KOG0696|consen 116 HTYSSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHHRCVENVPSLCGTDHTERRGRLYLEAHIKRDV-LTVTIKEAKNLIP 194 (683)
T ss_pred eecCCCchhhhHHHHHHHHHhcccccccccchHHHHHhhcCCcccCCcchhhcceEEEEEEecCce-EEEEehhhccccc
Confidence 268999999986 46666664 589999999997776 7778889998866
No 13
>KOG0576|consensus
Probab=99.49 E-value=4.1e-14 Score=160.25 Aligned_cols=273 Identities=18% Similarity=0.170 Sum_probs=196.7
Q ss_pred eeeecCCCCeeEEEEecC----CCe-EEEEEc-C---CCCC----CceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEE
Q psy3725 415 KIARVGDTKKIYQMDYIP----KEQ-LLVVLA-G---KQRY----VQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVR 481 (760)
Q Consensus 415 ~e~~d~~~~~i~Caa~~~----~~r-llvGTe-~---l~~~----~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~ 481 (760)
..+|+++..+|+||++|- +++ +++|+| | ++.+ ..+.++.. +++++++|+ .|.+..|+||..++|
T Consensus 484 sKvfngCpl~i~~aaswIhp~t~dq~ll~gaeegIy~lnlnel~e~~le~l~~-~r~Twly~~--~n~l~slsgks~~ly 560 (829)
T KOG0576|consen 484 SKVFNGCPLRIHCAASWIHPSTRDQALLFGAEEGIYTLNLNELHEATLEKLFP-RRCTWLYVI--NNVLTSLSGKSTQLY 560 (829)
T ss_pred HHHhccCcccceecccccCcchhhhHhhhhhccceeeccccccccccHhhccc-cCceEEEec--CceeeeccCCcccee
Confidence 356777799999999864 445 899999 4 2222 35555544 789999999 588999999999999
Q ss_pred EEECCCccC---------------CC------c-ceeecCcccceEEEEeeee--CCCccceEEEEEEecCCceEEEEEE
Q psy3725 482 LVPVRALDG---------------DE------V-EWVKIPETKGCLSFTTGPL--THTRTQHCLALAVKRQNSSQIILYE 537 (760)
Q Consensus 482 l~~L~~L~~---------------~~------~-~~~kl~etKgc~~f~~g~~--~~~~~~~~LcVAvKr~~~~~Vl~ye 537 (760)
.+++-+|.. ++ . -.+|+++||||++.++-+. .++. +||.|+. .++.++.|+
T Consensus 561 ~H~l~~l~~~~~~~~~~s~~~h~~per~~prk~a~stkipeTkgc~~c~V~R~~~~g~~---~lc~alp--~sivl~qwy 635 (829)
T KOG0576|consen 561 SHDLGGLFEAGEGTLFGSIIVHKEPERILPRKFALSTKIPETKGCQQCCVVRNPYTGGK---FLCGALP--TSIVLLQWY 635 (829)
T ss_pred ecchHHHHhhhcccccccccccCCCccccchhhceeeecCccccceeeeeecCCCCCCc---eeecccC--ceeEEeeec
Confidence 999987532 11 1 1379999999999988766 3344 9999994 577778888
Q ss_pred ecCCcccceeeeeEecCCcceEEEEec--C---ceEEEEEcCCeEEEEecCCCCceeecCCCCCccccccc--CCCCceE
Q psy3725 538 ITRTKTRHKRLHEVILPTLAQCIHIFS--E---GRLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTY--SPVDALL 610 (760)
Q Consensus 538 ~~~~k~~fkk~kE~~lP~~~~sl~~~~--~---~~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~--~~~~pl~ 610 (760)
...+||...+..++.+|.+..-.+.+. + ..+|||...+=.. +. +.....-...+..++++... ....+..
T Consensus 636 ~Pm~kf~l~k~i~~pl~~p~~~f~~l~~~~~e~p~vc~Gv~~~~~~--~~-~~v~f~~~~~~~~~~w~~~~~~~~~~v~~ 712 (829)
T KOG0576|consen 636 EPMNKFMLVKSISFPLPSPLSVFEMLVLPESEYPQVCVGVSAGGGT--LN-NEVLFHTAFLNSDSSWDIEAAGETLPVPQ 712 (829)
T ss_pred ChHHhhhHHHhcccCCCCccchhhhccccCcccceeeeeccCCCCC--CC-ceeEEEecccccccccceeccCcccCCce
Confidence 888888777777888888865433332 1 2899998764220 00 00001111122223333322 2345567
Q ss_pred EEEeCCCeEEEEecceEEEEcCCCC--ccc--ccceecCCCCcEEEeeCCeEEEEeCCeeEEEECcCCcEEEEE--ecCC
Q psy3725 611 AIELPRGEFLLVFHSLAAYVDSQGH--KSR--EKEIMYPALPTGASYMDGQLLIFSETHVDVFNAESGDWLQTV--NIRR 684 (760)
Q Consensus 611 i~~l~~~EfLLcy~~~gvfVD~~G~--rsR--~~~I~W~~~P~~~ay~~PYLlvf~~~~IEVr~i~tg~lVQtI--~~~~ 684 (760)
+.++..+-+|+||+++-..||.+|+ ..+ ..+|.++..|.++++...-+++|+.++|+.|.+.++++.|.| ..+-
T Consensus 713 v~qvdrd~I~v~~~n~V~~v~lqG~~~~~~~~~sel~f~f~iesv~~~~gsvlaf~~hgvqgr~l~S~~vtqei~d~tr~ 792 (829)
T KOG0576|consen 713 VTQVDRDTILVLFENMVKIVNLQGNGKVAVKLLSELTFDFDIESVVCLQGSVLAFWKHGVQGRSLTSNEVTQEIQDLTRH 792 (829)
T ss_pred eEEecccceEeeecCeeEEEeccCCccccccccccccccCCcceEEeeCCceecccCCcceeeeccchHHHHHHHHHHHH
Confidence 8888999999999999999999995 444 358999999999999999999999999999999999999998 3444
Q ss_pred ceecCCCCCEEEEe
Q psy3725 685 ALPLDTRGSLCFSL 698 (760)
Q Consensus 685 ir~L~s~G~l~l~s 698 (760)
.|+|-+...|.+.+
T Consensus 793 ~rllgs~rvi~les 806 (829)
T KOG0576|consen 793 FRLLGSDRVIILES 806 (829)
T ss_pred HHHhcCCchhhhhc
Confidence 56666655555443
No 14
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=99.18 E-value=2.5e-11 Score=97.44 Aligned_cols=52 Identities=46% Similarity=1.083 Sum_probs=47.6
Q ss_pred ceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCC
Q psy3725 211 HQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPV 262 (760)
Q Consensus 211 H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~ 262 (760)
|.|...+|..|++|++|.++|||+++||++|..|++.+|++|...++..|+.
T Consensus 1 H~f~~~~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~~~C~~ 52 (53)
T PF00130_consen 1 HHFVPTTFSKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVPPSCGC 52 (53)
T ss_dssp -EEEEEESSSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSSSBSST
T ss_pred CeEEEccCCCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcCCCCCC
Confidence 8999999999999999999999999999999999999999999999999964
No 15
>KOG4236|consensus
Probab=99.14 E-value=6.2e-11 Score=131.48 Aligned_cols=56 Identities=43% Similarity=0.895 Sum_probs=53.2
Q ss_pred CCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCC
Q psy3725 208 SKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVP 263 (760)
Q Consensus 208 ~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p 263 (760)
.-+|.|..+++.+||.|.+|.+++.|+.|||++|++|+|+||++|+.+||.+|...
T Consensus 265 kvPHTf~vHSY~rpTVCq~CkkLLkGL~rQGlqCkDCk~NcHkrCa~~v~~dClge 320 (888)
T KOG4236|consen 265 KVPHTFIVHSYTRPTVCQYCKKLLKGLFRQGLQCKDCKFNCHKRCAMKVPNDCLGE 320 (888)
T ss_pred cCCeeEEEeeccCchHHHHHHHHHHHHHhcCcccccCCcchhhhhhhhcccccccc
Confidence 36899999999999999999999999999999999999999999999999999653
No 16
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=98.91 E-value=6.1e-10 Score=87.81 Aligned_cols=50 Identities=46% Similarity=1.081 Sum_probs=48.1
Q ss_pred ceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCC
Q psy3725 211 HQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSC 260 (760)
Q Consensus 211 H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C 260 (760)
|.|....+..|++|++|.+.|||+..+|++|..|++++|++|...++..|
T Consensus 1 H~f~~~~~~~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~~~C 50 (50)
T cd00029 1 HRFVRKSFFKPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVPPSC 50 (50)
T ss_pred CccEEeeCCCCCChhhcchhhhccccceeEcCCCCCchhhhhhccCCCCC
Confidence 89999999999999999999999889999999999999999999999887
No 17
>KOG1011|consensus
Probab=98.87 E-value=2.2e-10 Score=128.33 Aligned_cols=144 Identities=24% Similarity=0.449 Sum_probs=96.5
Q ss_pred CCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCCccC-CCCCCCCCCCCCCCcceee
Q psy3725 207 SSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPPDQ-TKRPLGIDPTRGIGTAYEG 285 (760)
Q Consensus 207 ~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p~~~-~~~~~~id~~~~~Gt~~eG 285 (760)
...+|+|..++|..||||.-|.+++||+.|||++|..|++.||.+|.+.+.++|-..+.. +......|.+...-..+..
T Consensus 169 ~ttphnf~~~t~~tpt~cyecegllwglarqglrctqc~vk~hdkc~ell~adclqraaeks~khg~~drtq~lv~~ird 248 (1283)
T KOG1011|consen 169 ATTPHNFATTTFQTPTFCYECEGLLWGLARQGLRCTQCQVKVHDKCRELLSADCLQRAAEKSTKHGEADRTQSLVNVIRD 248 (1283)
T ss_pred cCCCCceeeeeccCCchhhhhhhHHHHHhhcccchhhccccHHHHHHHHhhhHHHHHHHHhhccccchhhHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999654321 1122223332211111112
Q ss_pred eeec--------------------------------ccccccccce--EEEEEEEeCcEEEEEecCCCCCCCCcccee--
Q psy3725 286 YVKV--------------------------------PKTGGVKKGW--VRQFVVVCDFKLFLYDISPDRNALPAVYVS-- 329 (760)
Q Consensus 286 ~vkv--------------------------------p~~~~~kkgw--~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~-- 329 (760)
.|++ .-..| ...| +-...|+|...|..-|..+...+.-...+.
T Consensus 249 rmki~e~nkpevfq~ir~vf~v~~~~~~e~lktvk~sileg-sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~kt 327 (1283)
T KOG1011|consen 249 RMKIQEQNKPEVFQMIRTVFDVDENIQKETLKTVKASILEG-SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKT 327 (1283)
T ss_pred HHHHHhhcChHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcc-ccccceeeEEeeeecccceecccCCCCCCcEEEeeccc
Confidence 2211 11111 1335 666789999999999876643322111111
Q ss_pred --------EEe-ecCCCCeEEEeeccCcccc
Q psy3725 330 --------LVL-DMRDEDFAVSGVRESDVIH 351 (760)
Q Consensus 330 --------~~l-dl~d~~fsV~~V~~sdvi~ 351 (760)
+.+ ..++|.|++.+.+.+|.|.
T Consensus 328 krrtrti~~~lnpvw~ekfhfechnstdrik 358 (1283)
T KOG1011|consen 328 KRRTRTIHQELNPVWNEKFHFECHNSTDRIK 358 (1283)
T ss_pred chhhHhhhhccchhhhhheeeeecCCCceeE
Confidence 222 3688999999988888543
No 18
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=98.76 E-value=3.3e-09 Score=83.01 Aligned_cols=49 Identities=45% Similarity=1.017 Sum_probs=46.4
Q ss_pred ceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCC
Q psy3725 211 HQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSC 260 (760)
Q Consensus 211 H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C 260 (760)
|.|...++..|++|++|.+.||++. ||++|..|++.+|++|...++.+|
T Consensus 1 H~~~~~~~~~~~~C~~C~~~i~~~~-~~~~C~~C~~~~H~~C~~~v~~~C 49 (49)
T smart00109 1 HHFVERTFKKPTKCCVCRKSIWGSF-QGLRCSWCKVKCHKKCAEKVPQPC 49 (49)
T ss_pred CceEEeccCCCCCccccccccCcCC-CCcCCCCCCchHHHHHHhhcCCCC
Confidence 8899999999999999999999876 899999999999999999999877
No 19
>KOG4236|consensus
Probab=98.72 E-value=2.8e-09 Score=118.61 Aligned_cols=56 Identities=32% Similarity=0.842 Sum_probs=53.4
Q ss_pred CCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCC
Q psy3725 207 SSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPV 262 (760)
Q Consensus 207 ~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~ 262 (760)
..++|...+++++.||||++|+..+||+.|||++|..||.+.|++|+.++|++|..
T Consensus 142 ~i~PH~l~vhSY~~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~kipNNCsG 197 (888)
T KOG4236|consen 142 QIRPHTLFVHSYKAPTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFKIPNNCSG 197 (888)
T ss_pred eeecceeeeecccCchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhcCCCCCCc
Confidence 46789999999999999999999999999999999999999999999999999954
No 20
>KOG0696|consensus
Probab=98.70 E-value=2.6e-09 Score=116.07 Aligned_cols=58 Identities=40% Similarity=0.882 Sum_probs=54.4
Q ss_pred CCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCCcc
Q psy3725 208 SKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPPD 265 (760)
Q Consensus 208 ~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p~~ 265 (760)
..-|.|..+++.+||+|+||++++.|+..||++|..|.+++|.+|...||+.|+....
T Consensus 108 r~kHkf~~~tYssPTFCDhCGsLLyGl~HQGmKC~~C~mNVH~rCv~nVPslCG~Dht 165 (683)
T KOG0696|consen 108 RSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHHRCVENVPSLCGTDHT 165 (683)
T ss_pred ccccceeeeecCCCchhhhHHHHHHHHHhcccccccccchHHHHHhhcCCcccCCcch
Confidence 4569999999999999999999999999999999999999999999999999987643
No 21
>KOG0695|consensus
Probab=98.69 E-value=3e-09 Score=112.96 Aligned_cols=57 Identities=30% Similarity=0.613 Sum_probs=54.5
Q ss_pred CCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCC
Q psy3725 207 SSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVP 263 (760)
Q Consensus 207 ~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p 263 (760)
..++|.|+++.|.+..+|..|.+.|||++||||+|.+|++.+|++|+.+|+..|+..
T Consensus 127 ~~ngh~fqakr~nrr~~c~ic~d~iwglgrqgyrcinckl~vhkkch~~v~~~cg~~ 183 (593)
T KOG0695|consen 127 RANGHLFQAKRFNRRAYCGICSDRIWGLGRQGYRCINCKLLVHKKCHGLVPLTCGKH 183 (593)
T ss_pred hhcCcchhhhhhccceeeeechhhhhhcccccceeecceeehhhhhcccccchhhhh
Confidence 468999999999999999999999999999999999999999999999999999854
No 22
>KOG0587|consensus
Probab=98.64 E-value=2.8e-09 Score=124.93 Aligned_cols=253 Identities=19% Similarity=0.315 Sum_probs=178.8
Q ss_pred CCeeEEEEecCCCeEEEEEc-C---CCCC--CceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCC----
Q psy3725 422 TKKIYQMDYIPKEQLLVVLA-G---KQRY--VQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGD---- 491 (760)
Q Consensus 422 ~~~i~Caa~~~~~rllvGTe-~---l~~~--~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~---- 491 (760)
+..+.||+ .++..+++||+ | ++++ .......+.++..|+.+++..+.++.++|+.+.++.|.+..|-..
T Consensus 640 ~se~~~aa-~~g~n~~~~t~~gl~lld~s~q~k~~~~i~~rrfqq~~~le~~n~l~tis~~~~~~~~~y~s~~~~k~l~~ 718 (953)
T KOG0587|consen 640 NSEILCAA-LWGVNLLVGTESGLMLLDRSGQGKVYPLINRRRFQQMDVLEGLNVLVTISGKKDKLRVYYLSWLRNKILHN 718 (953)
T ss_pred hhhHHHHH-hcCcceeecccccceeeccccCcccCCcccchhcccccccCCcceeEEEeccccccceecchHHhhhhhhc
Confidence 56889998 57888999999 4 2332 233445578899999999999999999999999999999887442
Q ss_pred --C----cceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCC-c-ccceeeeeEecCCcceEE--E
Q psy3725 492 --E----VEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRT-K-TRHKRLHEVILPTLAQCI--H 561 (760)
Q Consensus 492 --~----~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~-k-~~fkk~kE~~lP~~~~sl--~ 561 (760)
+ ..|+...+.-||..|.+.....-. +|++|.|- +..|+.|..... + -.|+.+-++. ..+... .
T Consensus 719 d~e~ek~~~~~~~~~~~~~~~~~~~k~~~ik---~l~is~~~--s~evy~~apk~~~k~~~~~s~~~~~--~~~~~~d~~ 791 (953)
T KOG0587|consen 719 DPEVEKKQGWTTVGDLEGCIHYKVVKYERIK---FLVIALKS--SVEVYAWAPKPYHKFMAFKSFGELV--HKPLLVDLT 791 (953)
T ss_pred CchhhhhccchhhhhhhcchhhhHHHHHHHH---Hhheeccc--cceeeecCCchHHHHHhhhhhhhhc--ccchhccch
Confidence 1 234666677788777765554333 78999864 556666664321 1 1233332222 222222 2
Q ss_pred EecC--ceEEEEEcCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeC---CCeEEEEecceEEEEcCCCCc
Q psy3725 562 IFSE--GRLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELP---RGEFLLVFHSLAAYVDSQGHK 636 (760)
Q Consensus 562 ~~~~--~~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~---~~EfLLcy~~~gvfVD~~G~r 636 (760)
+-.. +++..|...||+.++.. .+.+.+..-| -..+.+..|.+++.++ ..+.||||++-|+|||..|+-
T Consensus 792 ~ee~~~~~v~~gs~~~~~~~~~~-~~~~~~v~~~------~~~q~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~ 864 (953)
T KOG0587|consen 792 VEEGQRLKVIYGSCAGFHAVDVD-SGSVYDIYLP------THIQCSITPHAIIILPNTDGMELLLCYEDEGVYVNTYGRI 864 (953)
T ss_pred hhcCceEEEEecCcccccccccC-CCCCCCCcCC------cchhhcccceeEecCCCcchHHHhhhhhcccccccCccch
Confidence 2211 25666888999999996 4433333222 2224567788888775 357899999999999999998
Q ss_pred ccccceecCCCCcEEEeeC-CeEEEEeCCeeEEEECcCCcEEEEEecCCceecC
Q psy3725 637 SREKEIMYPALPTGASYMD-GQLLIFSETHVDVFNAESGDWLQTVNIRRALPLD 689 (760)
Q Consensus 637 sR~~~I~W~~~P~~~ay~~-PYLlvf~~~~IEVr~i~tg~lVQtI~~~~ir~L~ 689 (760)
...--.+|-..|.+++|.. .-.+.+.++.||||.++++.+--.+-.+++.-|.
T Consensus 865 ~k~v~~~~~~~~Ss~a~~~~~n~~g~~~ka~e~~s~e~~~~~g~~~~k~~~kls 918 (953)
T KOG0587|consen 865 TKDVVLQWGEMPTSVAYIRSNQIMGWGEKAIEIRSVETGHLDGVFMHKRAQRLK 918 (953)
T ss_pred HHHHHHhcCCCCCcceeeecccccccCcccceeeccccccccceeehhhHHhhh
Confidence 8777899999999999754 6899999999999999999888887666654443
No 23
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=98.50 E-value=1e-06 Score=80.68 Aligned_cols=97 Identities=18% Similarity=0.340 Sum_probs=66.7
Q ss_pred eeeeeccccccc-ccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCC--CeEEEeeccCcccccCCCcccee
Q psy3725 284 EGYVKVPKTGGV-KKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDE--DFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 284 eG~vkvp~~~~~-kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~--~fsV~~V~~sdvi~a~~~dip~i 360 (760)
+||+ -|.++. .+.|+++|++|.+..|++|....+..+ --.|+|... .++|....+.+ ..++.++.
T Consensus 2 eG~L--~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~~------~G~I~L~~~~~~~~v~~~~~~~----~~~~~~~~ 69 (103)
T cd01251 2 EGFM--EKTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAFA------KGEVFLGSQEDGYEVREGLPPG----TQGNHWYG 69 (103)
T ss_pred ceeE--EecCCCCCCCceeEEEEEeCCEEEEECCCCCcCc------CcEEEeeccccceeEeccCCcc----ccccccce
Confidence 6888 455554 588999999999999999987665432 225666442 34553321111 12345568
Q ss_pred eeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 361 FRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
|.|.+ | ..+++|.|+|+.++++|+++|+.+..
T Consensus 70 F~i~t-----~--~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 70 VTLVT-----P--ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred EEEEe-----C--CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 88853 2 35789999999999999999988753
No 24
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.46 E-value=4.1e-06 Score=74.02 Aligned_cols=101 Identities=25% Similarity=0.385 Sum_probs=76.2
Q ss_pred eeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeee
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFR 362 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~ 362 (760)
++||+.... ...++|+++|++|.+..|++|+.+.+.. ...+...++|.+ +.|......+. ....+-+..|.
T Consensus 3 ~~G~L~~~~--~~~~~wk~r~~vL~~~~L~~~~~~~~~~---~~~~~~~i~l~~--~~v~~~~~~~~--~~~~~~~~~f~ 73 (104)
T PF00169_consen 3 KEGWLLKKS--SSRKKWKKRYFVLRDSYLLYYKSSKDKS---DSKPKGSIPLDD--CTVRPDPSSDF--LSNKKRKNCFE 73 (104)
T ss_dssp EEEEEEEEE--SSSSSEEEEEEEEETTEEEEESSTTTTT---ESSESEEEEGTT--EEEEEETSSTS--TSTSSSSSEEE
T ss_pred EEEEEEEEC--CCCCCeEEEEEEEECCEEEEEecCcccc---ceeeeEEEEecC--ceEEEcCcccc--ccccCCCcEEE
Confidence 689997665 5678999999999999999998776411 223567788844 36665554332 15667889999
Q ss_pred eecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 363 ITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 363 it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
|++.. +.+++|.|+|..++..|+.+|+.+.
T Consensus 74 i~~~~------~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 74 ITTPN------GKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEETT------SEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEeCC------CcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 97542 2589999999999999999998874
No 25
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=98.40 E-value=2.3e-06 Score=78.97 Aligned_cols=98 Identities=26% Similarity=0.355 Sum_probs=63.7
Q ss_pred eeeeee-cccccc-cccceEEEEEEEeCcE-------EEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccC
Q psy3725 283 YEGYVK-VPKTGG-VKKGWVRQFVVVCDFK-------LFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHAT 353 (760)
Q Consensus 283 ~eG~vk-vp~~~~-~kkgw~r~~~~l~~~k-------L~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~ 353 (760)
.|||+. .|.... ..+.|+++|++|.+.. |.+|....+. .+..+|||.+ +..|..+......
T Consensus 1 ~eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~------k~~g~I~L~~----~~~v~~~~~~~~~ 70 (108)
T cd01266 1 LEGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKF------KLEFVIDLES----CSQVDPGLLCTAG 70 (108)
T ss_pred CceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCC------ccceEEECCc----cEEEccccccccc
Confidence 479985 332222 3469999999999876 5888754433 2456899965 2223332222222
Q ss_pred CCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 354 KKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 354 ~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
..-.+++|.|.+ | ..+++|.|+|+.+++.|+.+|.++
T Consensus 71 ~~~~~~~f~i~t-----~--~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 71 NCIFGYGFDIET-----I--VRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred CcccceEEEEEe-----C--CccEEEEECCHHHHHHHHHHHHhh
Confidence 223457888863 2 257999999999999999999654
No 26
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.39 E-value=2.3e-06 Score=75.20 Aligned_cols=91 Identities=23% Similarity=0.327 Sum_probs=63.9
Q ss_pred eeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeee
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFR 362 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~ 362 (760)
++||+.-. ++..++|+++|++|.+..|++|....+... .+...++|.+- .+.. . ..+ |..|.
T Consensus 1 ~~G~L~k~--~~~~~~W~~r~~vl~~~~L~~~~~~~~~~~----~~~~~i~l~~~--~~~~-~--------~~~-~~~F~ 62 (91)
T cd01246 1 VEGWLLKW--TNYLKGWQKRWFVLDNGLLSYYKNKSSMRG----KPRGTILLSGA--VISE-D--------DSD-DKCFT 62 (91)
T ss_pred CeEEEEEe--cccCCCceeeEEEEECCEEEEEecCccCCC----CceEEEEeceE--EEEE-C--------CCC-CcEEE
Confidence 57998543 345589999999999999999987764421 23456776442 2211 1 111 78999
Q ss_pred eecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 363 ITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 363 it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
|.+. . +..++|.|+|..++.+|+.+|..+
T Consensus 63 i~~~-----~-~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 63 IDTG-----G-DKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred EEcC-----C-CCEEEEECCCHHHHHHHHHHHHhC
Confidence 9632 1 257999999999999999999753
No 27
>KOG0694|consensus
Probab=98.39 E-value=6.2e-08 Score=111.60 Aligned_cols=61 Identities=28% Similarity=0.565 Sum_probs=56.9
Q ss_pred CCCCCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCCc
Q psy3725 204 HDRSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPP 264 (760)
Q Consensus 204 ~~~~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p~ 264 (760)
..++..+|.|..+.|.+|++|++|.+|+||+++|||+|++|...||++|+.++...|..-.
T Consensus 152 kVhei~gH~F~aT~l~Qpt~Cs~C~kFi~gL~kqGyQCqvC~~vvHKkCh~kvv~~C~~~~ 212 (694)
T KOG0694|consen 152 KVHEIDGHKFGATSLRQPTFCSWCQKFIWGLRKQGYQCQVCWRVVHKKCHVKVVTLCDFLD 212 (694)
T ss_pred eeEEeeCcEEEEeeccCcchhhhhhhheeccCCCceEEeeeeehHhhhhHHHHHHhccCcC
Confidence 3478899999999999999999999999999999999999999999999999999997643
No 28
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=98.38 E-value=2.8e-06 Score=76.13 Aligned_cols=89 Identities=16% Similarity=0.268 Sum_probs=64.1
Q ss_pred eeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeee
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFR 362 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~ 362 (760)
++||+ -|-+..-++|+++|+||.+..|++|...++.... +.-.|||.+- .|++...| ++.|.
T Consensus 1 ~~G~L--~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~----~~G~I~L~~~-----------~i~~~~~~-~~~F~ 62 (91)
T cd01247 1 TNGVL--SKWTNYINGWQDRYFVLKEGNLSYYKSEAEKSHG----CRGSIFLKKA-----------IIAAHEFD-ENRFD 62 (91)
T ss_pred CceEE--EEeccccCCCceEEEEEECCEEEEEecCccCcCC----CcEEEECccc-----------EEEcCCCC-CCEEE
Confidence 36887 3556678999999999999999999876654322 3456888542 12222223 68899
Q ss_pred eecccCCCCCCcceEEEeeCCHHHHHHHHHHHH
Q psy3725 363 ITTSLMDPPGTKNHTLMLADSDTEKTKWVVALS 395 (760)
Q Consensus 363 it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~ 395 (760)
|.+. + +..++|-|+|+.++++|+.+|+
T Consensus 63 i~~~----~--~r~~~L~A~s~~e~~~Wi~al~ 89 (91)
T cd01247 63 ISVN----E--NVVWYLRAENSQSRLLWMDSVV 89 (91)
T ss_pred EEeC----C--CeEEEEEeCCHHHHHHHHHHHh
Confidence 9532 1 3689999999999999999986
No 29
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=98.33 E-value=6.4e-06 Score=74.33 Aligned_cols=98 Identities=22% Similarity=0.347 Sum_probs=64.9
Q ss_pred eeeeeecccccccccceEEEEEEEeC--cEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVCD--FKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~~--~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
.+||+. |.++..+.|+++|++|.+ ..|.+|+.+.+.. +...|||++ .-+|....+. .......+-.+.
T Consensus 1 ~~G~L~--K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~------~~g~I~L~~-~~~v~~~~~~-~~~~~~~~~~~~ 70 (101)
T cd01235 1 CEGYLY--KRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTA------EKGCIDLAE-VKSVNLAQPG-MGAPKHTSRKGF 70 (101)
T ss_pred CeEEEE--EcCCCCCCccceEEEEECCCCEEEEecCCCCCc------cceEEEcce-eEEEeecCCC-CCCCCCCCCceE
Confidence 378884 566677899999999984 5899998665432 345788854 2333322211 111112234567
Q ss_pred eeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 361 FRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
|.|.+ + ..+++|+|+|..++++|+.+|..+
T Consensus 71 f~i~t-----~--~r~~~~~a~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 71 FDLKT-----S--KRTYNFLAENINEAQRWKEKIQQC 100 (101)
T ss_pred EEEEe-----C--CceEEEECCCHHHHHHHHHHHHhh
Confidence 88742 1 357899999999999999999754
No 30
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.26 E-value=6.4e-06 Score=74.29 Aligned_cols=90 Identities=21% Similarity=0.300 Sum_probs=60.6
Q ss_pred eeeeecccccccccceEEEEEEEeCc--EEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceee
Q psy3725 284 EGYVKVPKTGGVKKGWVRQFVVVCDF--KLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIF 361 (760)
Q Consensus 284 eG~vkvp~~~~~kkgw~r~~~~l~~~--kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if 361 (760)
.||+.=....+..++|+++|+||++. .|++|..+.+.. +.-.|||.+-.++. . ..+-|+.|
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~------p~G~I~L~~~~~~~---~--------~~~~~~~F 64 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAK------PLGRVDLSGAAFTY---D--------PREEKGRF 64 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCccc------ccceEECCccEEEc---C--------CCCCCCEE
Confidence 47763221122468999999999854 599997665432 34578886522211 1 11237889
Q ss_pred eeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 362 RITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 362 ~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
.|.+ | ...++|.|+|+.++++|+++|+.+
T Consensus 65 ~i~t-----~--~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 65 EIHS-----N--NEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred EEEc-----C--CcEEEEECCCHHHHHHHHHHHHhh
Confidence 9953 2 257899999999999999999865
No 31
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=98.26 E-value=7.5e-06 Score=73.51 Aligned_cols=92 Identities=18% Similarity=0.388 Sum_probs=65.2
Q ss_pred eeeeeecc-cccc-cccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 283 YEGYVKVP-KTGG-VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 283 ~eG~vkvp-~~~~-~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
++||++-- +.+| ..+.|+++|++|.++.|++|..+.+.. +..+|+|..- .|..+.. ..-|..
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~------~~~~I~L~~~--~v~~~~~--------~~k~~~ 65 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEK------AEGLIFLSGF--TIESAKE--------VKKKYA 65 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCc------cceEEEccCC--EEEEchh--------cCCceE
Confidence 58998543 3334 567899999999999999997665432 3457888543 4433321 124688
Q ss_pred eeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHH
Q psy3725 361 FRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSE 396 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~ 396 (760)
|.|++ |. ..+++|.|+|+.+.++|+.+|..
T Consensus 66 F~I~~-----~~-~~~~~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 66 FKVCH-----PV-YKSFYFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred EEECC-----CC-CcEEEEEeCCHHHHHHHHHHHHh
Confidence 99952 22 25789999999999999999965
No 32
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.24 E-value=1.2e-05 Score=73.41 Aligned_cols=96 Identities=19% Similarity=0.371 Sum_probs=65.8
Q ss_pred eeeeeecccccc---cccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccce
Q psy3725 283 YEGYVKVPKTGG---VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPC 359 (760)
Q Consensus 283 ~eG~vkvp~~~~---~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~ 359 (760)
.+|+++ +.+| .-+.|+|+|++|.++.|++|--..... | +..+|||++ ..+|.++... . ...+.|+
T Consensus 2 ~~G~l~--k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~--~---~~g~IdL~~-~~sVk~~~~~--~--~~~~~~~ 69 (101)
T cd01264 2 IEGQLK--EKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDD--P---DDCSIDLSK-IRSVKAVAKK--R--RDRSLPK 69 (101)
T ss_pred cceEEe--ecCccceeeecceeEEEEEeCCEEEEEeccCccC--C---CCceEEccc-ceEEeecccc--c--cccccCc
Confidence 578884 4455 568999999999999998885432221 1 124788844 3355444321 0 1135689
Q ss_pred eeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 360 IFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 360 if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
.|.|.+ |. .+++|.|+|+.+++.|+.+|+.+
T Consensus 70 ~Fei~t-----p~--rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 70 AFEIFT-----AD--KTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred EEEEEc-----CC--ceEEEEeCCHHHHHHHHHHHHhh
Confidence 999942 22 68999999999999999999765
No 33
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=98.20 E-value=1.3e-05 Score=73.86 Aligned_cols=87 Identities=14% Similarity=0.235 Sum_probs=58.3
Q ss_pred cceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCCCcce
Q psy3725 297 KGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNH 376 (760)
Q Consensus 297 kgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~~~~~ 376 (760)
+.|+++|++|++..|.+|+...+.... +.-.|||.+ .-.|..+......+ .+-.-.+.|.|.+. . ..
T Consensus 19 ~nwKkRwFvL~~~~L~Yyk~~~~~~~~----~kG~I~L~~-~~~ve~~~~~~~~~-~~~~~~~~F~i~t~-----~--r~ 85 (106)
T cd01238 19 LNYKERLFVLTKSKLSYYEGDFEKRGS----KKGSIDLSK-IKCVETVKPEKNPP-IPERFKYPFQVVHD-----E--GT 85 (106)
T ss_pred CCceeEEEEEcCCEEEEECCCcccccC----cceeEECCc-ceEEEEecCCcCcc-cccccCccEEEEeC-----C--Ce
Confidence 489999999999999999876553122 334688854 23344433322110 01123588999642 2 46
Q ss_pred EEEeeCCHHHHHHHHHHHHH
Q psy3725 377 TLMLADSDTEKTKWVVALSE 396 (760)
Q Consensus 377 l~LlA~S~~ek~kWv~~L~~ 396 (760)
++|.|+|+.|+++|+.+|..
T Consensus 86 ~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 86 LYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred EEEEcCCHHHHHHHHHHHHh
Confidence 88999999999999999874
No 34
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.19 E-value=1.1e-05 Score=74.06 Aligned_cols=81 Identities=21% Similarity=0.355 Sum_probs=53.6
Q ss_pred ccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCCCcc
Q psy3725 296 KKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKN 375 (760)
Q Consensus 296 kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~~~~ 375 (760)
.++|+|+|++|.+.+++.|-.+...... +.-+||| +...+|.... |+ ..-++.|.|.+ |. .
T Consensus 21 ~K~WkrRWFvL~~~~~L~y~~d~~~~~~----p~G~IdL-~~~~~V~~~~--~~-----~~~~~~f~I~t-----p~--R 81 (104)
T cd01236 21 SKRWQRRWFILYDHGLLTYALDEMPTTL----PQGTIDM-NQCTDVVDAE--AR-----TGQKFSICILT-----PD--K 81 (104)
T ss_pred eccccceEEEEeCCCEEEEeeCCCCCcc----cceEEEc-cceEEEeecc--cc-----cCCccEEEEEC-----CC--c
Confidence 5899999999987665666222211112 3457999 4444543221 11 22378899852 33 6
Q ss_pred eEEEeeCCHHHHHHHHHHHH
Q psy3725 376 HTLMLADSDTEKTKWVVALS 395 (760)
Q Consensus 376 ~l~LlA~S~~ek~kWv~~L~ 395 (760)
.++|.|+|+.|+++|+.+|.
T Consensus 82 ~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 82 EHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred eEEEEeCCHHHHHHHHHHHH
Confidence 79999999999999999986
No 35
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.18 E-value=1.8e-05 Score=72.03 Aligned_cols=94 Identities=28% Similarity=0.402 Sum_probs=65.5
Q ss_pred eeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeee
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFR 362 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~ 362 (760)
.+||+.- .++..+.|+++|++|.+..|++|..+.+. .+..+|+|.+ .+|..+.. .-. ...-|+.|.
T Consensus 4 k~G~L~K--kg~~~k~WkkRwfvL~~~~L~yyk~~~~~------~~~~~I~L~~--~~v~~~~~--~~~--~~~~~~~F~ 69 (100)
T cd01233 4 KKGYLNF--PEETNSGWTRRFVVVRRPYLHIYRSDKDP------VERGVINLST--ARVEHSED--QAA--MVKGPNTFA 69 (100)
T ss_pred eeEEEEe--eCCCCCCcEEEEEEEECCEEEEEccCCCc------cEeeEEEecc--cEEEEccc--hhh--hcCCCcEEE
Confidence 4689853 45556889999999999999999876543 2456788863 34433221 111 012378899
Q ss_pred eecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 363 ITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 363 it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
|.+ | ..+++|.|+|+.+++.|+.+|+..
T Consensus 70 I~t-----~--~rt~~~~A~s~~e~~~Wi~ai~~~ 97 (100)
T cd01233 70 VCT-----K--HRGYLFQALSDKEMIDWLYALNPL 97 (100)
T ss_pred EEC-----C--CCEEEEEcCCHHHHHHHHHHhhhh
Confidence 942 2 357899999999999999999754
No 36
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.17 E-value=1.8e-05 Score=69.94 Aligned_cols=93 Identities=20% Similarity=0.322 Sum_probs=63.2
Q ss_pred eeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeee
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFR 362 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~ 362 (760)
++||+....+ +..++|+++|++|.+..|.+|+...+.... +...|+|.+ .+|..+...+ +-++.|.
T Consensus 1 k~G~L~kk~~-~~~~~W~kr~~~L~~~~l~~y~~~~~~~~~----~~~~i~l~~--~~v~~~~~~~-------~~~~~f~ 66 (94)
T cd01250 1 KQGYLYKRSS-KSNKEWKKRWFVLKNGQLTYHHRLKDYDNA----HVKEIDLRR--CTVRHNGKQP-------DRRFCFE 66 (94)
T ss_pred CcceEEEECC-CcCCCceEEEEEEeCCeEEEEcCCcccccc----cceEEeccc--eEEecCcccc-------CCceEEE
Confidence 4788865332 226789999999999999999876543222 234577742 2333322111 3568899
Q ss_pred eecccCCCCCCcceEEEeeCCHHHHHHHHHHHHH
Q psy3725 363 ITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSE 396 (760)
Q Consensus 363 it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~ 396 (760)
|++.. ..++|.|+|..+.++|+.+|..
T Consensus 67 i~~~~-------~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 67 VISPT-------KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred EEcCC-------cEEEEECCCHHHHHHHHHHHhc
Confidence 96432 4689999999999999999864
No 37
>KOG1090|consensus
Probab=98.14 E-value=1.8e-06 Score=101.35 Aligned_cols=139 Identities=22% Similarity=0.273 Sum_probs=100.1
Q ss_pred cCeeeecCCCcccccccccccCCCCCCCc--------cCCCCCCCC-C---C-------------------CCCCCccee
Q psy3725 236 RQGVVCDICGFACHLSCCDKVPPSCPVPP--------DQTKRPLGI-D---P-------------------TRGIGTAYE 284 (760)
Q Consensus 236 rQG~~C~~C~~~cH~kC~~~vp~~C~~p~--------~~~~~~~~i-d---~-------------------~~~~Gt~~e 284 (760)
.+|+.|..|+..+|.+|.+ -..+|+.-. +..+.+.+. . + .....+.+|
T Consensus 1559 pv~~~c~~c~~~~he~c~~-~~~~~~~~t~~~~a~~~~~i~ms~g~~~s~ts~a~~~arss~~tly~qf~s~~teNr~~e 1637 (1732)
T KOG1090|consen 1559 PVSVHCKKCRIHVHEGCVN-RNITIGNITHTWDAKPFEDIKMSSGAIQSGTSQAEKMARSSNNTLYRQFMSPPTENRIPE 1637 (1732)
T ss_pred cceecccccccccchhhcc-ccccccceeeccccCCccccccCccccccccchHHHhhcCCcchhhhhhcCCcccccCcc
Confidence 5789999999999999988 334464211 111111110 0 0 012445678
Q ss_pred eeeecccccccccceEEEEEEEeCcE--EEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeee
Q psy3725 285 GYVKVPKTGGVKKGWVRQFVVVCDFK--LFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFR 362 (760)
Q Consensus 285 G~vkvp~~~~~kkgw~r~~~~l~~~k--L~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~ 362 (760)
|++ +|.|...|+|+.+|+||+..| |.+||..+|..+ .-.|||-+ |.+|+. |.+...|..-+|.
T Consensus 1638 G~L--yKrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~p------kG~IdLae----vesv~~---~~~k~vdekgffd 1702 (1732)
T KOG1090|consen 1638 GYL--YKRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKP------KGCIDLAE----VESVAL---IGPKTVDEKGFFD 1702 (1732)
T ss_pred cch--hhcchhhcccccceeEecCCccceeeecccccccc------cchhhhhh----hhhhcc---cCccccCccceee
Confidence 887 777778899999999998766 999999996643 34688832 556664 7788889999999
Q ss_pred eecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 363 ITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 363 it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
+.++. ...-++|.+....++|++.|+..
T Consensus 1703 lktt~-------rvynf~a~nin~AqqWve~iqsc 1730 (1732)
T KOG1090|consen 1703 LKTTN-------RVYNFCAQNINLAQQWVECIQSC 1730 (1732)
T ss_pred eehhh-------HHHHHHhccchHHHHHHHHHHHh
Confidence 97553 45678999999999999999764
No 38
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.11 E-value=2e-05 Score=67.64 Aligned_cols=94 Identities=22% Similarity=0.372 Sum_probs=67.1
Q ss_pred eeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeee
Q psy3725 284 EGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRI 363 (760)
Q Consensus 284 eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~i 363 (760)
+||+....... .+.|++.|++|.+..|.+|+...+.. ...+...++|.+ ..|......+ +.++.|.|
T Consensus 2 ~G~l~~~~~~~-~~~w~~~~~~L~~~~l~~~~~~~~~~---~~~~~~~i~l~~--~~v~~~~~~~-------~~~~~f~i 68 (96)
T cd00821 2 EGYLLKKTGKL-RKGWKRRWFVLFNDLLLYYKKKSSKK---SYKPKGSIPLSG--AEVEESPDDS-------GRKNCFEI 68 (96)
T ss_pred cchhhhhhChh-hCCccEEEEEEECCEEEEEECCCCCc---CCCCcceEEcCC--CEEEECCCcC-------CCCcEEEE
Confidence 57776544322 47899999999999999998766432 123456788866 4454433222 56799999
Q ss_pred ecccCCCCCCcceEEEeeCCHHHHHHHHHHHHH
Q psy3725 364 TTSLMDPPGTKNHTLMLADSDTEKTKWVVALSE 396 (760)
Q Consensus 364 t~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~ 396 (760)
+..+ +..++|.|+|..++.+|+.+|+.
T Consensus 69 ~~~~------~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 69 RTPD------GRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred ecCC------CcEEEEEeCCHHHHHHHHHHHhc
Confidence 7443 26799999999999999999975
No 39
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.08 E-value=1.9e-05 Score=74.45 Aligned_cols=104 Identities=14% Similarity=0.254 Sum_probs=67.9
Q ss_pred eeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCC--cccee
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKK--DIPCI 360 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~--dip~i 360 (760)
|.|++.|...-+..+.|+|.|++|.|..|++|..+++.. ...|...|||.+ ..+..|.. +.+- --|..
T Consensus 3 ~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~---~~~Plg~I~L~~--c~~~~v~~-----~~r~~c~Rp~t 72 (122)
T cd01263 3 YHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDEK---RKGPTGLIDLST--CTSSEGAS-----AVRDICARPNT 72 (122)
T ss_pred cceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCccc---cCCceEEEEhhh--Cccccccc-----CChhhcCCCCe
Confidence 678888765556668999999999999999998776632 123567888855 33333321 1111 12566
Q ss_pred eeeecccCCC----------CCC---cceEEEeeCCHHHHHHHHHHHHH
Q psy3725 361 FRITTSLMDP----------PGT---KNHTLMLADSDTEKTKWVVALSE 396 (760)
Q Consensus 361 f~it~s~l~~----------~~~---~~~l~LlA~S~~ek~kWv~~L~~ 396 (760)
|.|...+..- +.. +.-.+|-|+|..+++.|+.+|++
T Consensus 73 F~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 73 FHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred EEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence 8886554320 001 11245669999999999999975
No 40
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.05 E-value=6.3e-05 Score=71.10 Aligned_cols=99 Identities=19% Similarity=0.431 Sum_probs=66.8
Q ss_pred eeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeee
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFR 362 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~ 362 (760)
.+||+. +.++..+.|+++|++|.+..|.+|..+.+.. +..+|+|.+ ..|..+.. ..-|..|.
T Consensus 2 k~G~L~--K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~------~~g~I~L~~--~~v~~~~~--------~~~~~~F~ 63 (125)
T cd01252 2 REGWLL--KQGGRVKTWKRRWFILTDNCLYYFEYTTDKE------PRGIIPLEN--VSIREVED--------PSKPFCFE 63 (125)
T ss_pred cEEEEE--EeCCCCCCeEeEEEEEECCEEEEEcCCCCCC------ceEEEECCC--cEEEEccc--------CCCCeeEE
Confidence 369986 5566678999999999999999998655432 456788863 34443321 12467777
Q ss_pred eecccC----CCC----------CCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 363 ITTSLM----DPP----------GTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 363 it~s~l----~~~----------~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
|....- ..+ +....++|.|+|+.++++|+.+|..+..
T Consensus 64 i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 64 LFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred EECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 743210 000 1124566899999999999999977653
No 41
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=97.99 E-value=0.00014 Score=62.91 Aligned_cols=100 Identities=24% Similarity=0.411 Sum_probs=70.0
Q ss_pred ceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceee
Q psy3725 282 AYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIF 361 (760)
Q Consensus 282 ~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if 361 (760)
.++||+...... ....|++.|++|.+..|.+|+..++... ..+...++|.+- .|......+. ...+..|
T Consensus 2 ~~~G~l~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~---~~~~~~i~l~~~--~v~~~~~~~~-----~~~~~~f 70 (102)
T smart00233 2 IKEGWLYKKSGG-KKKSWKKRYFVLFNSTLLYYKSEKAKKD---YKPKGSIDLSGI--TVREAPDPDS-----AKKPHCF 70 (102)
T ss_pred ceeEEEEEeCCC-ccCCceEEEEEEECCEEEEEeCCCcccc---CCCceEEECCcC--EEEeCCCCcc-----CCCceEE
Confidence 478999766543 4578999999999999999987765321 234556777442 4443332221 3457888
Q ss_pred eeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 362 RITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 362 ~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
.|.... +..++|.|+|..++++|+.+|..+.
T Consensus 71 ~l~~~~------~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 71 EIKTAD------RRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EEEecC------CceEEEEcCCHHHHHHHHHHHHHhh
Confidence 886432 2479999999999999999998763
No 42
>KOG4239|consensus
Probab=97.98 E-value=7e-07 Score=94.01 Aligned_cols=57 Identities=35% Similarity=0.833 Sum_probs=53.9
Q ss_pred CCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCCc
Q psy3725 208 SKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPP 264 (760)
Q Consensus 208 ~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p~ 264 (760)
.++|+|......-|++|+.|++++||+.++|+.|..|+|.||.+|...+...|-.|+
T Consensus 49 ~r~~~~~~~g~~~~~~~~~c~~~~~~vl~egL~c~~c~~tch~rcr~lv~ldc~~p~ 105 (348)
T KOG4239|consen 49 LRGHNFYTAGLLLPTWCDKCGDFIWGVLREGLLCIHCKFTCHIRCRMLVDLDCRSPP 105 (348)
T ss_pred ccccccccccccccccchhhhHHHHHHHHHHHhhhhcCCccCHHHHhhhhhhhcCCC
Confidence 488999999999999999999999999999999999999999999999999997765
No 43
>KOG0694|consensus
Probab=97.84 E-value=3.7e-06 Score=97.31 Aligned_cols=63 Identities=29% Similarity=0.657 Sum_probs=57.9
Q ss_pred CCCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCCccCCC
Q psy3725 206 RSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPPDQTK 268 (760)
Q Consensus 206 ~~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p~~~~~ 268 (760)
....+|+|..+.+.+|+||.||+.++|+..+||.+|..|+.+||.+|...+++.|+.+.....
T Consensus 226 ~~~~Phrf~~~~~q~ptFc~hCGs~L~r~~qqGlkCs~Cg~n~H~~c~~~va~~CG~s~t~~~ 288 (694)
T KOG0694|consen 226 TFRNPHRFVKLNRQRPTFCDHCGSVLYRLRQQGLKCSTCGRNVHNRCVENLAPNCGGSRTFSP 288 (694)
T ss_pred cccCCCcchhhhccCccHHHhcchhhhhhcccCeeehhhhccccHHHHHhcccCCCCchhhhh
Confidence 345679999999999999999999999999999999999999999999999999998876544
No 44
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.83 E-value=0.00011 Score=66.80 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=57.2
Q ss_pred cceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCCCcce
Q psy3725 297 KGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNH 376 (760)
Q Consensus 297 kgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~~~~~ 376 (760)
+.|+++|++|++..|.+|+... ..+...|||.+ .-.|..|.. ...+.+++|.|.+ |. .+
T Consensus 19 ~n~KkRwF~Lt~~~L~Y~k~~~-------~~~~g~I~L~~-i~~ve~v~~------~~~~~~~~fqivt-----~~--r~ 77 (98)
T cd01244 19 LHFKKRYFQLTTTHLSWAKDVQ-------CKKSALIKLAA-IKGTEPLSD------KSFVNVDIITIVC-----ED--DT 77 (98)
T ss_pred cCCceeEEEECCCEEEEECCCC-------CceeeeEEccc-eEEEEEcCC------cccCCCceEEEEe-----CC--Ce
Confidence 6899999999999999998433 12455788844 333334433 2334468999953 22 47
Q ss_pred EEEeeCCHHHHHHHHHHHHH
Q psy3725 377 TLMLADSDTEKTKWVVALSE 396 (760)
Q Consensus 377 l~LlA~S~~ek~kWv~~L~~ 396 (760)
++|.|+|+.|+++|+.+|.+
T Consensus 78 ~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 78 MQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred EEEECCCHHHHHHHHHHHhc
Confidence 99999999999999999975
No 45
>KOG3564|consensus
Probab=97.82 E-value=0.0001 Score=81.90 Aligned_cols=86 Identities=24% Similarity=0.495 Sum_probs=65.5
Q ss_pred CCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCCccC--CC---CCC-----------
Q psy3725 208 SKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPPDQ--TK---RPL----------- 271 (760)
Q Consensus 208 ~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p~~~--~~---~~~----------- 271 (760)
...|.|...++..|.+|.+|++.| -|+.-+++|++|.+.||..|..+++-+|-..-.. .+ +.+
T Consensus 284 mr~htfi~kt~~~~~~Cv~C~krI-kfg~~sLkCRdC~v~~H~~Cr~~l~lpCIP~l~g~~~k~geg~L~DF~~s~aPMI 362 (604)
T KOG3564|consen 284 MRLHTFISKTVIKPENCVPCGKRI-KFGKLSLKCRDCPVVCHIECRDKLTLPCIPTLIGPPVKTGEGMLADFAPSTAPMI 362 (604)
T ss_pred cccchhhHhhccCcccchhhhhhh-hhhhcccccccCCeeechhHHhcCCCCCcCccCCCCCccCceehhhhcccccccc
Confidence 467999999999999999999986 4677799999999999999999999999431100 11 100
Q ss_pred ------CCCCCCCCCcceeeeeecccccc
Q psy3725 272 ------GIDPTRGIGTAYEGYVKVPKTGG 294 (760)
Q Consensus 272 ------~id~~~~~Gt~~eG~vkvp~~~~ 294 (760)
+++.....|...+|.++|+....
T Consensus 363 PalVVHCVneIEaRGLteeGLYRvsg~~r 391 (604)
T KOG3564|consen 363 PALVVHCVNEIEARGLTEEGLYRVSGCDR 391 (604)
T ss_pred hHHHHHHHHHHHHccccccceeeccccHH
Confidence 11222568999999999986543
No 46
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.79 E-value=0.00023 Score=65.00 Aligned_cols=98 Identities=19% Similarity=0.378 Sum_probs=60.0
Q ss_pred eeeeeecccccccccceEEEEEEEe-CcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceee
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVC-DFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIF 361 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~-~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if 361 (760)
.+||+. +.++..+.|+++|++|+ +..|++|-..+.... ...++|.+ ++|..... ......-|..|
T Consensus 3 k~G~L~--K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~------~~~i~l~~--~~v~~~~~----~~~~~~~~~~F 68 (102)
T cd01241 3 KEGWLH--KRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGD------PFLPPLNN--FSVAECQL----MKTERPRPNTF 68 (102)
T ss_pred EEEEEE--eecCCCCCCeeEEEEEeCCCeEEEEecCCCccC------ccccccCC--eEEeeeee----eeccCCCcceE
Confidence 579984 45667789999999999 777877754332111 12455433 55543221 11112345688
Q ss_pred eeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 362 RITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 362 ~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
.|+..+...+..+ +++|+|+.++++|+.+|..+
T Consensus 69 ~i~~~~~~~~~~r---~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 69 IIRCLQWTTVIER---TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred EEEeccCCcccCE---EEEeCCHHHHHHHHHHHHhh
Confidence 8863332211112 56799999999999999764
No 47
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.75 E-value=0.00026 Score=66.81 Aligned_cols=87 Identities=18% Similarity=0.305 Sum_probs=62.8
Q ss_pred ccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCc-----ccccCCCccceeeeeecccCCC
Q psy3725 296 KKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESD-----VIHATKKDIPCIFRITTSLMDP 370 (760)
Q Consensus 296 kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sd-----vi~a~~~dip~if~it~s~l~~ 370 (760)
...|+++|++|.+..|.+|+.+.+. .+..+|.+ |..|+|..-...+ .+ .......+.|.|+++
T Consensus 30 ~~~w~kRWFvlr~s~L~Y~~~~~~~------~~~~vil~-D~~f~v~~~~~~~~~~~~~~-~~~~~~~~~~~i~t~---- 97 (121)
T cd01254 30 CDRWQKRWFIVKESFLAYMDDPSSA------QILDVILF-DVDFKVNGGGKEDISLAVEL-KDITGLRHGLKITNS---- 97 (121)
T ss_pred ccCCcceeEEEeCCEEEEEcCCCCC------ceeeEEEE-cCCccEEeCCcccccccccc-cccCCCceEEEEEcC----
Confidence 3579999999999999999865542 24556777 7889997543321 11 112344678888633
Q ss_pred CCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 371 PGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 371 ~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
...+.|-|+|+.+++.|+++|+++
T Consensus 98 ---~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 98 ---NRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHHHhC
Confidence 257999999999999999999864
No 48
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.70 E-value=0.00057 Score=62.36 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=61.8
Q ss_pred eeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeee
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFR 362 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~ 362 (760)
.|||+ -+.|+..+.|+.+|+.|-+.-|+++..... ...+...+...++|++ ..|... | ..+.|+-|.
T Consensus 4 keG~L--~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~-~~~~~y~~~~~i~l~~--~~v~~~---~-----~~~~~~~F~ 70 (101)
T cd01219 4 KEGSV--LKISSTTEKTEERYLFLFNDLLLYCVPRKM-IGGSKFKVRARIDVSG--MQVCEG---D-----NLERPHSFL 70 (101)
T ss_pred cceEE--EEEecCCCCceeEEEEEeCCEEEEEEcccc-cCCCcEEEEEEEeccc--EEEEeC---C-----CCCcCceEE
Confidence 57887 344555578999999997776666652211 1111112334455533 333221 1 345789999
Q ss_pred eecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 363 ITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 363 it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
|...+ .+++++|+|+.||.+|+++|+++.
T Consensus 71 I~~~~-------rsf~l~A~s~eEk~~W~~ai~~~i 99 (101)
T cd01219 71 VSGKQ-------RCLELQARTQKEKNDWVQAIFSII 99 (101)
T ss_pred EecCC-------cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 96443 579999999999999999999874
No 49
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=97.69 E-value=0.00033 Score=65.17 Aligned_cols=106 Identities=21% Similarity=0.315 Sum_probs=50.7
Q ss_pred eeeeeecccccccccceEEEEEEEe-CcEEEEEecCCCCCCCC-ccceeEEeecCCCCeEE-EeeccCccc---ccCCCc
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVC-DFKLFLYDISPDRNALP-AVYVSLVLDMRDEDFAV-SGVRESDVI---HATKKD 356 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~-~~kL~~yd~~~~~~~~p-~~~~~~~ldl~d~~fsV-~~V~~sdvi---~a~~~d 356 (760)
.+|+|.--.+. ..+||+++|++|. +..|.+|+++.+....- ....+. .-++.+.+.. ..+.....+ ++....
T Consensus 1 k~G~l~K~~~~-~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (112)
T PF15413_consen 1 KEGYLYKWGNK-FGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESS-RVIRKGDWSISRRSSRIQGIKDKNPFGEI 78 (112)
T ss_dssp EEEEEEE--TT-S-S--EEEEEEEE-TTEEEEESS-------------TT--SB-SEEEE---GGGT-EEEES-T--SS-
T ss_pred CCceEEEecCC-CCcCccccEEEEEeCCEEEEeecccccccccccccchh-ceEeecccCcccccccccccccCCcccCc
Confidence 36888533332 5689999999999 99999999844332100 000000 0011122221 111111111 223333
Q ss_pred cceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 357 IPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 357 ip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
....|.|. .| ..++.|.|+|..|+..|+++|.++
T Consensus 79 ~~~~~~i~-----T~--~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 79 HLKVFSIF-----TP--TKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SSEEEEEE------S--S-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCCCcEEE-----CC--CcEEEEEECCHHHHHHHHHHHHhC
Confidence 34555551 12 358999999999999999999874
No 50
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=97.66 E-value=0.00052 Score=59.25 Aligned_cols=95 Identities=26% Similarity=0.410 Sum_probs=64.8
Q ss_pred eeeeecccccc--cccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceee
Q psy3725 284 EGYVKVPKTGG--VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIF 361 (760)
Q Consensus 284 eG~vkvp~~~~--~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if 361 (760)
+||+....... ....|++.|++|.+..|.+|+...+..... ..+++.+-. |......+ +.+.+|
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~-----~~~~l~~~~--v~~~~~~~-------~~~~~F 67 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP-----GSIPLSEIS--VEEDPDGS-------DDPNCF 67 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC-----CEEEccceE--EEECCCCC-------CCCceE
Confidence 57776544332 257899999999999999999876543221 345553322 33322211 467899
Q ss_pred eeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHH
Q psy3725 362 RITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSE 396 (760)
Q Consensus 362 ~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~ 396 (760)
.|..... ....++|.|+|..++++|+.+|..
T Consensus 68 ~i~~~~~----~~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 68 AIVTKDR----GRRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred EEECCCC----CcEEEEEEcCCHHHHHHHHHHHhc
Confidence 9975432 236799999999999999999875
No 51
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=97.65 E-value=0.00052 Score=62.79 Aligned_cols=93 Identities=19% Similarity=0.279 Sum_probs=63.9
Q ss_pred ceeeeeecccccccccceEEEEEEEeCc------EEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCC
Q psy3725 282 AYEGYVKVPKTGGVKKGWVRQFVVVCDF------KLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKK 355 (760)
Q Consensus 282 ~~eG~vkvp~~~~~kkgw~r~~~~l~~~------kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~ 355 (760)
..+||++-. +.|+|+|+||.+. +|.+|+.+..-. ..+..|.-+|+| +..++|... +|. .
T Consensus 3 ~k~GyL~K~------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~-~~~~~p~~vI~L-~~c~~v~~~--~d~---k-- 67 (101)
T cd01257 3 RKSGYLRKQ------KSMHKRFFVLRAESSGGPARLEYYENEKKFL-QKGSAPKRVIPL-ESCFNINKR--ADA---K-- 67 (101)
T ss_pred cEEEEEeEe------cCcEeEEEEEecCCCCCCceEEEECChhhcc-ccCCCceEEEEc-cceEEEeec--ccc---c--
Confidence 457888532 6799999999988 899998754211 011235678998 555665432 121 1
Q ss_pred ccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 356 DIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 356 dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
-++.|.|.+ |. .+++|.|+|+.|+++|+.+|.++
T Consensus 68 -~~~~f~i~t-----~d--r~f~l~aese~E~~~Wi~~i~~~ 101 (101)
T cd01257 68 -HRHLIALYT-----RD--EYFAVAAENEAEQDSWYQALLEL 101 (101)
T ss_pred -cCeEEEEEe-----CC--ceEEEEeCCHHHHHHHHHHHhhC
Confidence 247888853 33 47999999999999999999764
No 52
>KOG2996|consensus
Probab=97.44 E-value=4.4e-05 Score=86.13 Aligned_cols=58 Identities=34% Similarity=0.736 Sum_probs=53.1
Q ss_pred CCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCCcc
Q psy3725 207 SSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPPD 265 (760)
Q Consensus 207 ~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p~~ 265 (760)
.++.|.|..++|..+|.|.+|..+|.|...|||+|.-|+...|+.|...+|+ |+....
T Consensus 520 ~an~H~fqmhtF~~~tsCkvC~mllrGtfYQGY~C~~c~~~ahkecl~~vp~-cgr~~q 577 (865)
T KOG2996|consen 520 RANNHDFQMHTFKNTTSCKVCQMLLRGTFYQGYKCEKCGADAHKECLGRVPP-CGRYLQ 577 (865)
T ss_pred cccCcceEEEeccCCcchHHHHHHhhhhhhcceeeeeccccHHHHhccCCCC-cccccc
Confidence 4688999999999999999999999999999999999999999999999995 865433
No 53
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.41 E-value=0.00099 Score=60.60 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=58.3
Q ss_pred ccccc-ccceEEEEEEEeC----cEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeeeec
Q psy3725 291 KTGGV-KKGWVRQFVVVCD----FKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITT 365 (760)
Q Consensus 291 ~~~~~-kkgw~r~~~~l~~----~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~ 365 (760)
|.++. .+-|++.|+++.+ +.|++|+...+.. +.-.+||.+ ..|.+|.. ....-|++|.|..
T Consensus 7 K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~------p~gli~l~~--~~V~~v~d------s~~~r~~cFel~~ 72 (98)
T cd01245 7 KRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTK------PIGLIDLSD--AYLYPVHD------SLFGRPNCFQIVE 72 (98)
T ss_pred cCCCCcccccceeEEEEecCCCCceEEEEcCCCCCC------ccceeeccc--cEEEEccc------cccCCCeEEEEec
Confidence 44454 6889999999975 8899998666543 233567644 37777653 2345689999953
Q ss_pred ccCCCCCCcceEEEeeCCHHHHHHHHHHHHH
Q psy3725 366 SLMDPPGTKNHTLMLADSDTEKTKWVVALSE 396 (760)
Q Consensus 366 s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~ 396 (760)
... ....++.|++ .||++|+++|..
T Consensus 73 ~~~-----~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 73 RAL-----PTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CCC-----CeEEEEeCCH-HHHHHHHHHHhc
Confidence 211 1345666666 999999999864
No 54
>KOG0193|consensus
Probab=97.23 E-value=0.00014 Score=83.46 Aligned_cols=53 Identities=32% Similarity=0.763 Sum_probs=45.4
Q ss_pred CCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCC
Q psy3725 207 SSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPV 262 (760)
Q Consensus 207 ~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~ 262 (760)
....|+|..++|-...+|+.|+. ++.-.|++|+.|+|.||.+|..+||..|+-
T Consensus 175 pl~~H~~~rktf~~~~fC~~~~~---~~l~~gfrC~~C~~KfHq~Cs~~vp~~C~~ 227 (678)
T KOG0193|consen 175 PLTTHNFVRKTFFPLAFCDSCCN---KFLFTGFRCQTCGYKFHQSCSPRVPTSCVN 227 (678)
T ss_pred Cccceeeeeccccchhhhhhhcc---hhhhcccccCCCCCccccccCCCCCCCCCC
Confidence 35679999999999999995554 233589999999999999999999999983
No 55
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.18 E-value=0.0036 Score=56.96 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=53.3
Q ss_pred ccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCCCcc
Q psy3725 296 KKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKN 375 (760)
Q Consensus 296 kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~~~~ 375 (760)
.+.|++.|++|.+..|.+|..+......+. ....|++.+ ..|.-+. ..+.-+.+|+|+.. . +.
T Consensus 20 ~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~--~~~~i~l~~--~~i~~~~-------~~~k~~~~F~l~~~----~--~~ 82 (104)
T cd01253 20 NRSWDNVYGVLCGQSLSFYKDEKMAAENVH--GEPPVDLTG--AQCEVAS-------DYTKKKHVFRLRLP----D--GA 82 (104)
T ss_pred CCCcceEEEEEeCCEEEEEecCcccccCCC--CCCcEeccC--CEEEecC-------CcccCceEEEEEec----C--CC
Confidence 478999999999999999975442211111 111344432 2221111 11123589999632 1 35
Q ss_pred eEEEeeCCHHHHHHHHHHHHH
Q psy3725 376 HTLMLADSDTEKTKWVVALSE 396 (760)
Q Consensus 376 ~l~LlA~S~~ek~kWv~~L~~ 396 (760)
+++|-|+|+.+..+|+.+|..
T Consensus 83 ~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 83 EFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred EEEEECCCHHHHHHHHHHHhc
Confidence 789999999999999999864
No 56
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.09 E-value=0.0039 Score=58.56 Aligned_cols=90 Identities=14% Similarity=0.261 Sum_probs=57.4
Q ss_pred ccceEEEEEEEeCcEEEEEecCCCCCC-CCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCCCc
Q psy3725 296 KKGWVRQFVVVCDFKLFLYDISPDRNA-LPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTK 374 (760)
Q Consensus 296 kkgw~r~~~~l~~~kL~~yd~~~~~~~-~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~~~ 374 (760)
++.|++.|++|.|..|++|--...... .+.... +..++|.+-.+ -|....+.-+.+|+|+.. .+
T Consensus 23 ~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~-------~~~Isi~~a~~--~ia~dy~Kr~~VF~L~~~------~g 87 (117)
T cd01230 23 KRSWKMFYGILRGLVLYLQKDEHKPGKSLSETEL-------KNAISIHHALA--TRASDYSKKPHVFRLRTA------DW 87 (117)
T ss_pred CCcceEEEEEEECCEEEEEccCcccccccccccc-------cceEEecccee--EeeccccCCCcEEEEEcC------CC
Confidence 589999999999999999954331111 110011 12233322110 122223344699999743 24
Q ss_pred ceEEEeeCCHHHHHHHHHHHHHHHHH
Q psy3725 375 NHTLMLADSDTEKTKWVVALSELHRI 400 (760)
Q Consensus 375 ~~l~LlA~S~~ek~kWv~~L~~~~~~ 400 (760)
..++|-|++..+..+|+.+|+.+...
T Consensus 88 ~~~lfqA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 88 REFLFQTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999987654
No 57
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.00 E-value=0.011 Score=53.96 Aligned_cols=94 Identities=22% Similarity=0.302 Sum_probs=58.2
Q ss_pred eeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeee
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFR 362 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~ 362 (760)
-||++. |.|+ +..|.|.|+.+.|.-|+......++ ....+...++|.+ ..|..+.. ..+.|.-|.
T Consensus 4 kEG~L~--K~~~-k~~~~R~~FLFnD~LlY~~~~~~~~---~~y~~~~~i~L~~--~~V~~~~~-------~~~~~~~F~ 68 (99)
T cd01220 4 RQGCLL--KLSK-KGLQQRMFFLFSDLLLYTSKSPTDQ---NSFRILGHLPLRG--MLTEESEH-------EWGVPHCFT 68 (99)
T ss_pred eEEEEE--EEeC-CCCceEEEEEccceEEEEEeecCCC---ceEEEEEEEEcCc--eEEeeccC-------CcCCceeEE
Confidence 467762 3333 4568888888887533222221111 1123455677633 34544332 135688999
Q ss_pred eecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 363 ITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 363 it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
|. ++..++.|.|+|+.||++|+++|+++.
T Consensus 69 I~-------~~~ks~~l~A~s~~Ek~~Wi~~i~~aI 97 (99)
T cd01220 69 IF-------GGQCAITVAASTRAEKEKWLADLSKAI 97 (99)
T ss_pred EE-------cCCeEEEEECCCHHHHHHHHHHHHHHh
Confidence 96 224689999999999999999998874
No 58
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.91 E-value=0.005 Score=56.61 Aligned_cols=97 Identities=22% Similarity=0.309 Sum_probs=60.1
Q ss_pred eeeecccccc-cccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeee
Q psy3725 285 GYVKVPKTGG-VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRI 363 (760)
Q Consensus 285 G~vkvp~~~~-~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~i 363 (760)
.++++-+|-. ..+||++.|+++.|..|++|-..++..+.| . ++|......| ..||--+.++ +.|++
T Consensus 5 ~~l~~~~~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~~~p----~--i~lnl~gcev----~~dv~~~~~k---f~I~l 71 (106)
T cd01237 5 DYLKYFKPKKLTLKGYKQYWFTFRDTSISYYKSKEDSNGAP----I--GQLNLKGCEV----TPDVNVAQQK---FHIKL 71 (106)
T ss_pred HHHHHhCcchhhhhhheeEEEEEeCCEEEEEccchhcCCCC----e--EEEecCceEE----cccccccccc---eEEEE
Confidence 3455545544 368999999999999999996666544433 3 4443333333 2233223333 55565
Q ss_pred ecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 364 TTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 364 t~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
. .+..-| -..++|-|+|+.++++|++++--+
T Consensus 72 ~--~ps~~~-~r~y~l~cdsEeqya~Wmaa~rla 102 (106)
T cd01237 72 L--IPTAEG-MNEVWLRCDNEKQYAKWMAACRLA 102 (106)
T ss_pred e--cCCccC-CeEEEEECCCHHHHHHHHHHHHHh
Confidence 2 221112 247999999999999999987543
No 59
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=96.82 E-value=0.0012 Score=63.47 Aligned_cols=42 Identities=19% Similarity=0.361 Sum_probs=31.5
Q ss_pred CccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 355 KDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 355 ~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
.|-.-.|.+++.|+|..+ ++++|||+|+++|++|+++|+++|
T Consensus 94 ~~~~~~yp~~~~hlG~~~--~~~TLyA~s~~~R~~W~e~I~~qq 135 (135)
T PF15405_consen 94 SDSKSLYPFTFRHLGRKG--YSYTLYASSAQARQKWLEKIEEQQ 135 (135)
T ss_dssp --TSSEEEEEE---GGG---EEEEEE-SSHHHHHHHHHHHHHH-
T ss_pred ccCCCccCEEEEEcCCCc--eEEEEEeCCHHHHHHHHHHHHhcC
Confidence 466889999999999866 679999999999999999999986
No 60
>KOG0930|consensus
Probab=96.63 E-value=0.0084 Score=63.06 Aligned_cols=99 Identities=21% Similarity=0.449 Sum_probs=66.4
Q ss_pred ceeeeeecccccc-cccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 282 AYEGYVKVPKTGG-VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 282 ~~eG~vkvp~~~~-~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
..|||+- +.+| ..+.|+|+|++|.++.|++||-..|+.+.. +|.| +.++|+.|.+. + -|++
T Consensus 261 dREGWLl--Klgg~rvktWKrRWFiLtdNCLYYFe~tTDKEPrG------IIpL--eNlsir~VedP------~--kP~c 322 (395)
T KOG0930|consen 261 DREGWLL--KLGGNRVKTWKRRWFILTDNCLYYFEYTTDKEPRG------IIPL--ENLSIREVEDP------K--KPNC 322 (395)
T ss_pred cccceee--eecCCcccchhheeEEeecceeeeeeeccCCCCCc------ceec--cccceeeccCC------C--CCCe
Confidence 3589972 3333 567899999999999999999988887543 4444 33566666532 2 2566
Q ss_pred eeeecccC--------CC--------CCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 361 FRITTSLM--------DP--------PGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 361 f~it~s~l--------~~--------~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
|.+- +.- |. -|.-..+-+.|+|..+|..|+..|.....
T Consensus 323 fEly-~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 323 FELY-IPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred EEEe-cCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 6662 111 00 11124567899999999999999876654
No 61
>KOG0612|consensus
Probab=96.26 E-value=0.0018 Score=79.07 Aligned_cols=82 Identities=32% Similarity=0.588 Sum_probs=69.1
Q ss_pred CCcceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccc
Q psy3725 279 IGTAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIP 358 (760)
Q Consensus 279 ~Gt~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip 358 (760)
+|..++||+++|......+-|.+.|+++...++++|.-.-++. .. .+ +++|+ +..|+|..|+..|++|+..++||
T Consensus 1102 ~~~~~eg~lsl~~~~~~~~~~~~~~V~~s~~~~l~~~~~~~k~-~~--~~-~il~i-~k~~~v~~vt~~d~~~~~~~eip 1176 (1317)
T KOG0612|consen 1102 QGSRLEGWLSLPPRQNLDRDWKRIYVIVSSKKILFYVSEQDKE-QS--GP-LILDI-KKLFHVRQVTQTDVRRADAKEIP 1176 (1317)
T ss_pred hhhhhhcccccCcccccccchheeEEeecccceEeeecccccc-cc--ch-hhhhh-hhceeEEeecccccccchhhhcc
Confidence 4778999999997766555799999999999999998777776 22 23 78888 55899999999999999999999
Q ss_pred eeeeeec
Q psy3725 359 CIFRITT 365 (760)
Q Consensus 359 ~if~it~ 365 (760)
.||.|-.
T Consensus 1177 ~~fq~l~ 1183 (1317)
T KOG0612|consen 1177 RIFQILY 1183 (1317)
T ss_pred hhHHHHH
Confidence 9999843
No 62
>KOG0291|consensus
Probab=96.11 E-value=1.9 Score=51.55 Aligned_cols=231 Identities=14% Similarity=0.247 Sum_probs=136.8
Q ss_pred CeeEEEEec-CCCeEEEEEc--C------CCCC-CceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC
Q psy3725 423 KKIYQMDYI-PKEQLLVVLA--G------KQRY-VQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE 492 (760)
Q Consensus 423 ~~i~Caa~~-~~~rllvGTe--~------l~~~-~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~ 492 (760)
.+|+.++.- .|++|++|+- | ...+ -.+.+=++.-++.-+++-|+-++++.=++ +..|.+++... +
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e-DgKVKvWn~~S--g-- 382 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE-DGKVKVWNTQS--G-- 382 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC-CCcEEEEeccC--c--
Confidence 355555531 2889999988 2 1122 14455566778999999999998877665 67899988732 0
Q ss_pred cceeecC-cccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEe----cCce
Q psy3725 493 VEWVKIP-ETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIF----SEGR 567 (760)
Q Consensus 493 ~~~~kl~-etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~----~~~~ 567 (760)
.=...+. .|.|++.+...... . ..|+..+-- +|..|.+.| |+-++-|+.|.++|.-++. ++ -
T Consensus 383 fC~vTFteHts~Vt~v~f~~~g-~---~llssSLDG----tVRAwDlkR----YrNfRTft~P~p~QfscvavD~sGe-l 449 (893)
T KOG0291|consen 383 FCFVTFTEHTSGVTAVQFTARG-N---VLLSSSLDG----TVRAWDLKR----YRNFRTFTSPEPIQFSCVAVDPSGE-L 449 (893)
T ss_pred eEEEEeccCCCceEEEEEEecC-C---EEEEeecCC----eEEeeeecc----cceeeeecCCCceeeeEEEEcCCCC-E
Confidence 0012222 23455544433322 2 266766655 788898765 6788999999998754443 34 8
Q ss_pred EEEEEcCCeEEE--EecCCCCceeecCCCCCcccccccCCCCceE--EEEeCCCeEE--EEecceEEEEcCCCCcccccc
Q psy3725 568 LCVGYQSGFSIY--KFSQDNRPIPLIHQDNPLVSLLTYSPVDALL--AIELPRGEFL--LVFHSLAAYVDSQGHKSREKE 641 (760)
Q Consensus 568 LcVG~~~gF~iv--dl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~--i~~l~~~EfL--Lcy~~~gvfVD~~G~rsR~~~ 641 (760)
+|.|....|+|+ +++ +++..+++. +.-.|+. +|.. .+..| .-+|..--.=|-.+....-.+
T Consensus 450 V~AG~~d~F~IfvWS~q-TGqllDiLs-----------GHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEt 516 (893)
T KOG0291|consen 450 VCAGAQDSFEIFVWSVQ-TGQLLDILS-----------GHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVET 516 (893)
T ss_pred EEeeccceEEEEEEEee-cCeeeehhc-----------CCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeee
Confidence 899999989876 555 555544443 2223332 1221 12222 133433333333333222235
Q ss_pred eecCCCCcEEEeeCC--eEEEEe-CCeeEEEECcCCcEEEEEecCC
Q psy3725 642 IMYPALPTGASYMDG--QLLIFS-ETHVDVFNAESGDWLQTVNIRR 684 (760)
Q Consensus 642 I~W~~~P~~~ay~~P--YLlvf~-~~~IEVr~i~tg~lVQtI~~~~ 684 (760)
|.-....++++|..- -|.|.+ +.-|-+++++.+-.+-+|.+++
T Consensus 517 l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgrk 562 (893)
T KOG0291|consen 517 LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRK 562 (893)
T ss_pred EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchh
Confidence 777777788888743 454444 5578999998887776665544
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.09 E-value=1.8 Score=43.30 Aligned_cols=232 Identities=12% Similarity=0.152 Sum_probs=118.8
Q ss_pred CCeeEEEEecC-CCeEEEEEc-C------CCCCCceEEc-CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC
Q psy3725 422 TKKIYQMDYIP-KEQLLVVLA-G------KQRYVQIARV-GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE 492 (760)
Q Consensus 422 ~~~i~Caa~~~-~~rllvGTe-~------l~~~~~l~rv-~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~ 492 (760)
...|.|..... ++.|+.|++ | +......... .....+..+...++.+.+++.+ .+..|+++++..-..
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~-- 85 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS-SDKTIRLWDLETGEC-- 85 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc-CCCeEEEEEcCcccc--
Confidence 34577776433 345888875 2 2222122222 3446688999998876666654 468999999854211
Q ss_pred cceeecCccc-ceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCceEEE
Q psy3725 493 VEWVKIPETK-GCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEGRLCV 570 (760)
Q Consensus 493 ~~~~kl~etK-gc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~~LcV 570 (760)
...+.... ....+.. ...+. +++++.. .-.|.+|.+...+ ....+. .+..+.++.|.+++.+.+
T Consensus 86 --~~~~~~~~~~i~~~~~--~~~~~---~~~~~~~---~~~i~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~ 151 (289)
T cd00200 86 --VRTLTGHTSYVSSVAF--SPDGR---ILSSSSR---DKTIKVWDVETGK----CLTTLRGHTDWVNSVAFSPDGTFVA 151 (289)
T ss_pred --eEEEeccCCcEEEEEE--cCCCC---EEEEecC---CCeEEEEECCCcE----EEEEeccCCCcEEEEEEcCcCCEEE
Confidence 11222111 2222222 22223 4554441 2268888875332 223333 456788999998555544
Q ss_pred -EE-cCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeC-CC-eEEEEecc-eEEEEcCC-CCcccccce-e
Q psy3725 571 -GY-QSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELP-RG-EFLLVFHS-LAAYVDSQ-GHKSREKEI-M 643 (760)
Q Consensus 571 -G~-~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~-~~-EfLLcy~~-~gvfVD~~-G~rsR~~~I-~ 643 (760)
|. .....++|+. +......+.. ...++..+... ++ .++.+..+ .-...|.. |+.... + .
T Consensus 152 ~~~~~~~i~i~d~~-~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--~~~ 217 (289)
T cd00200 152 SSSQDGTIKLWDLR-TGKCVATLTG-----------HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT--LRG 217 (289)
T ss_pred EEcCCCcEEEEEcc-ccccceeEec-----------CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc--hhh
Confidence 44 4457778885 2322222211 11122222222 22 33333322 22222332 333322 2 2
Q ss_pred cCCCCcEEEeeC-C-eEEEEe-CCeeEEEECcCCcEEEEEecCC
Q psy3725 644 YPALPTGASYMD-G-QLLIFS-ETHVDVFNAESGDWLQTVNIRR 684 (760)
Q Consensus 644 W~~~P~~~ay~~-P-YLlvf~-~~~IEVr~i~tg~lVQtI~~~~ 684 (760)
.+..+.++++.. . ++++.. +..|.|+++.++..++.+....
T Consensus 218 ~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 261 (289)
T cd00200 218 HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT 261 (289)
T ss_pred cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC
Confidence 233445566654 3 555555 7889999999999999886443
No 64
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=95.94 E-value=0.018 Score=54.08 Aligned_cols=88 Identities=20% Similarity=0.392 Sum_probs=50.2
Q ss_pred cccceEEEEEEEeCcEEEEEecCCC-CCCCC-------ccceeEEeecCCCCeEEEeeccCcccccCCCccceeeeeecc
Q psy3725 295 VKKGWVRQFVVVCDFKLFLYDISPD-RNALP-------AVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTS 366 (760)
Q Consensus 295 ~kkgw~r~~~~l~~~kL~~yd~~~~-~~~~p-------~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s 366 (760)
.+++|+.-|++|+|..|++|..... ....+ ...+...|+|.. ++..+ ++| .. | -|.+|++++.
T Consensus 22 ~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~---a~a~~-a~d--Y~--K-r~~VFrL~~~ 92 (119)
T PF15410_consen 22 SKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHH---ALAEI-ASD--YT--K-RKNVFRLRTA 92 (119)
T ss_dssp S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT----EEEE-ETT--BT--T-CSSEEEEE-T
T ss_pred CCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecc---eEEEe-Ccc--cc--c-CCeEEEEEeC
Confidence 3579999999999999999965221 11111 111233455532 11122 333 21 2 5799999744
Q ss_pred cCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 367 LMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 367 ~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
. +..++|-|.|..+-+.|+.+|+-+
T Consensus 93 d------g~e~Lfqa~~~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 93 D------GSEYLFQASDEEEMNEWIDAINYA 117 (119)
T ss_dssp T------S-EEEEE-SSHHHHHHHHHHHHHH
T ss_pred C------CCEEEEECCCHHHHHHHHHHHhhh
Confidence 2 468999999999999999999864
No 65
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.21 E-value=0.25 Score=45.51 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=51.8
Q ss_pred ccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCCCcc
Q psy3725 296 KKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKN 375 (760)
Q Consensus 296 kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~~~~ 375 (760)
+++.+.+++.|-.. +++|-... -+. ........++|.+ ..|..+.. ..++|..|.|.+. ..
T Consensus 15 rk~~~~R~ffLFnD-~LvY~~~~-~~~-~~~~~~~~i~L~~--~~v~~~~d-------~~~~~n~f~I~~~-------~k 75 (104)
T cd01218 15 RKKPKQRQFFLFND-ILVYGNIV-ISK-KKYNKQHILPLEG--VQVESIED-------DGIERNGWIIKTP-------TK 75 (104)
T ss_pred cCCCceEEEEEecC-EEEEEEee-cCC-ceeeEeeEEEccc--eEEEecCC-------cccccceEEEecC-------Ce
Confidence 35555556666555 46773211 000 0112233456522 34444332 1256788999532 35
Q ss_pred eEEEeeCCHHHHHHHHHHHHHHHHHH
Q psy3725 376 HTLMLADSDTEKTKWVVALSELHRIL 401 (760)
Q Consensus 376 ~l~LlA~S~~ek~kWv~~L~~~~~~l 401 (760)
+..++|+|++||++|+++|+++..-+
T Consensus 76 Sf~v~A~s~~eK~eWl~~i~~ai~~~ 101 (104)
T cd01218 76 SFAVYAATETEKREWMLHINKCVTDL 101 (104)
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999987743
No 66
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.99 E-value=0.079 Score=49.11 Aligned_cols=106 Identities=14% Similarity=0.172 Sum_probs=65.4
Q ss_pred eeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeee
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFR 362 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~ 362 (760)
+||++-+-.+ .++.|++.|++|-++.|+++.....+++. ......++.+. .|=....-.--+-+..|.=++||
T Consensus 2 ~~g~LylK~~--gkKsWKk~~f~LR~SGLYy~~Kgksk~sr---dL~cl~~f~~~--nvY~~~~~kKk~kAPTd~~F~~K 74 (114)
T cd01259 2 MEGPLYLKAD--GKKSWKKYYFVLRSSGLYYFPKEKTKNTR---DLACLNLLHGH--NVYTGLGWRKKYKSPTDYCFGFK 74 (114)
T ss_pred ccceEEEccC--CCccceEEEEEEeCCeeEEccCCCcCCHH---HHHHHHhcccC--cEEEEechhhccCCCCCceEEEe
Confidence 4677754433 36899999999999998777655444332 11222333222 23222223344555666666666
Q ss_pred eecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 363 ITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 363 it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
.. .+...+.+.--+|+|++++.++.|+.+|-=+
T Consensus 75 ~~--~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 75 AV--GDQSKGSQSIKYLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred cc--ccCcccchhheeeccCCHHHHHHHHHHHHHH
Confidence 54 4434344667789999999999999987433
No 67
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.61 E-value=5.4 Score=39.77 Aligned_cols=224 Identities=13% Similarity=0.182 Sum_probs=116.4
Q ss_pred CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCce
Q psy3725 453 GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSS 531 (760)
Q Consensus 453 ~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~ 531 (760)
++..+|+.+.+.++.+++++-+ .+..++++++..-.. ...+.. ...+..+. ....+. +++++-. .-
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~-~~g~i~i~~~~~~~~----~~~~~~~~~~i~~~~--~~~~~~---~l~~~~~---~~ 73 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGS-GDGTIKVWDLETGEL----LRTLKGHTGPVRDVA--ASADGT---YLASGSS---DK 73 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEee-cCcEEEEEEeeCCCc----EEEEecCCcceeEEE--ECCCCC---EEEEEcC---CC
Confidence 3557899999999877776655 368999998853221 111111 11111111 122222 3444432 22
Q ss_pred EEEEEEecCCcccceeeeeEec-CCcceEEEEecCceEEEEE--cCCeEEEEecCCCCceeecCCCCCcccccccCCCCc
Q psy3725 532 QIILYEITRTKTRHKRLHEVIL-PTLAQCIHIFSEGRLCVGY--QSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDA 608 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~kE~~l-P~~~~sl~~~~~~~LcVG~--~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~p 608 (760)
.|.+|.+...+ ...++.. ...+.++.|.+++.+.++. .....++++. +......+. ....+
T Consensus 74 ~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~-----------~~~~~ 137 (289)
T cd00200 74 TIRLWDLETGE----CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-TGKCLTTLR-----------GHTDW 137 (289)
T ss_pred eEEEEEcCccc----ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC-CcEEEEEec-----------cCCCc
Confidence 78888876432 2334443 3478889999865555554 3446777875 232222111 11223
Q ss_pred eEEEEeCC-CeEEEEec--ceEEEEcCC-CCcccccceecCC-CCcEEEeeCC--eEEEEe-CCeeEEEECcCCcEEEEE
Q psy3725 609 LLAIELPR-GEFLLVFH--SLAAYVDSQ-GHKSREKEIMYPA-LPTGASYMDG--QLLIFS-ETHVDVFNAESGDWLQTV 680 (760)
Q Consensus 609 l~i~~l~~-~EfLLcy~--~~gvfVD~~-G~rsR~~~I~W~~-~P~~~ay~~P--YLlvf~-~~~IEVr~i~tg~lVQtI 680 (760)
+..+...+ +.+|++-+ ..-.+.|.. |+.... +.-.. ...++++... ++++.. ++.|.|+++.++..++.+
T Consensus 138 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT--LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEEEEEcCcCCEEEEEcCCCcEEEEEcccccccee--EecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch
Confidence 43344433 55665543 333334543 433322 22222 3456666554 555554 678999999999998887
Q ss_pred e-cC-Cceec--CCCCCEEEEecCCccEEEE
Q psy3725 681 N-IR-RALPL--DTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 681 ~-~~-~ir~L--~s~G~l~l~s~~~~~~~~~ 707 (760)
. .. .+.-+ +.++.++++...+-.+.+|
T Consensus 216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~ 246 (289)
T cd00200 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246 (289)
T ss_pred hhcCCceEEEEEcCCCcEEEEEcCCCcEEEE
Confidence 3 22 22222 2346666555433444444
No 68
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.55 E-value=0.48 Score=44.26 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=30.7
Q ss_pred ccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 356 DIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 356 dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
+++.-|.|.... ..++.|+|.|..+|++|+++|..++.
T Consensus 73 ~~knaF~I~~~~------~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 73 EYKNAFEIILKD------GNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred ccCceEEEEcCC------CCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 468899996331 24699999999999999999998753
No 69
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.29 E-value=0.39 Score=44.18 Aligned_cols=95 Identities=19% Similarity=0.341 Sum_probs=57.0
Q ss_pred eeeeecccccccccceEEEEEEEeC-cEEEEEecCCCCC--C-CCccceeEEeecCCCCeEE--EeeccCcccccCCCcc
Q psy3725 284 EGYVKVPKTGGVKKGWVRQFVVVCD-FKLFLYDISPDRN--A-LPAVYVSLVLDMRDEDFAV--SGVRESDVIHATKKDI 357 (760)
Q Consensus 284 eG~vkvp~~~~~kkgw~r~~~~l~~-~kL~~yd~~~~~~--~-~p~~~~~~~ldl~d~~fsV--~~V~~sdvi~a~~~di 357 (760)
+||+-+-...+.+--|.+.|+...+ +++|-+=..+.++ . .+.+.. ++.+.+ ..|.++ ..-|-
T Consensus 2 ~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~-------~e~~~l~sc~~r~~-----~~~dR 69 (104)
T cd01249 2 EGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQ-------DETLTLKSCSRRKT-----ESIDK 69 (104)
T ss_pred CceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEecccccccccCccccc-------ceEEeeeecccccc-----CCccc
Confidence 6776544433355679999999887 5666333222221 0 112222 222333 224433 34466
Q ss_pred ceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHH
Q psy3725 358 PCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALS 395 (760)
Q Consensus 358 p~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~ 395 (760)
-+.|.|++.. .| .+++|=|+|+.+++.|+++++
T Consensus 70 RFCFei~~~~--~~---~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 70 RFCFDVEVEE--KP---GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred eeeEeeeecC--CC---CeEEEEecCHHHHHHHHHhhc
Confidence 7999996443 22 368999999999999999985
No 70
>PF15409 PH_8: Pleckstrin homology domain
Probab=94.11 E-value=0.44 Score=42.73 Aligned_cols=77 Identities=25% Similarity=0.338 Sum_probs=49.8
Q ss_pred cccceEEEEEEE--eCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCC
Q psy3725 295 VKKGWVRQFVVV--CDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPG 372 (760)
Q Consensus 295 ~kkgw~r~~~~l--~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~ 372 (760)
..+||.++|++| ...-|.+|-...+. ..--.||++. .+|++++++ +-|.|.+ |
T Consensus 10 ~lqG~~kRyFvL~~~~G~LsYy~~~~~~------~~rGsi~v~~-----------a~is~~~~~--~~I~ids------g 64 (89)
T PF15409_consen 10 PLQGWHKRYFVLDFEKGTLSYYRNQNSG------KLRGSIDVSL-----------AVISANKKS--RRIDIDS------G 64 (89)
T ss_pred cCCCceeEEEEEEcCCcEEEEEecCCCC------eeEeEEEccc-----------eEEEecCCC--CEEEEEc------C
Confidence 358999999999 66667777533322 1122344422 145555542 4445532 2
Q ss_pred CcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 373 TKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 373 ~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
.....|=|.|+.+.+.|+.+|+.+
T Consensus 65 -~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 65 -DEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred -CeEEEEEcCCHHHHHHHHHHHHhc
Confidence 256889999999999999999875
No 71
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=93.57 E-value=0.053 Score=38.54 Aligned_cols=29 Identities=28% Similarity=0.686 Sum_probs=25.7
Q ss_pred ccCCCcccccccccCeeeecCCCcccccccc
Q psy3725 223 KCNHCTSLMVGLTRQGVVCDICGFACHLSCC 253 (760)
Q Consensus 223 ~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~ 253 (760)
+|+.|...+-|+. +|.|..|.|..|.+|+
T Consensus 2 ~C~~C~~~~~~~~--~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY--FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE--eEEeCCCCCeEcCccC
Confidence 6999999887754 9999999999999996
No 72
>KOG2114|consensus
Probab=93.17 E-value=14 Score=45.21 Aligned_cols=224 Identities=12% Similarity=0.133 Sum_probs=121.7
Q ss_pred eeEEEEecCCCeEEEEEc-C----CCCCCce---EEcCCCCCeeEEEEecCCCeEEEEECC---CC-eEEEEECCCccCC
Q psy3725 424 KIYQMDYIPKEQLLVVLA-G----KQRYVQI---ARVGDTKKIYQMDYIPEEQLLVVLAGK---QR-YVRLVPVRALDGD 491 (760)
Q Consensus 424 ~i~Caa~~~~~rllvGTe-~----l~~~~~l---~rv~~~k~V~QI~Vi~e~~lLlvLsgk---~r-~L~l~~L~~L~~~ 491 (760)
.|.|..+ .++.|++||. | +++...+ .++-+..-|++|.++.+.+.|+.+.-. +. .|.+|+++..++.
T Consensus 27 ~isc~~s-~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSS-STGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcC-CCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 7788763 5678999998 3 3333222 223333349999999999999998732 23 6899999888653
Q ss_pred C-c--------ceeecC-cccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCccccee-eeeEecCCcceEE
Q psy3725 492 E-V--------EWVKIP-ETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKR-LHEVILPTLAQCI 560 (760)
Q Consensus 492 ~-~--------~~~kl~-etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk-~kE~~lP~~~~sl 560 (760)
. . .+++.+ ++......++..... +++++. .| =.|++|+-+-...+.-+ .-+-.--+++..+
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-----~Iv~Gf--~n-G~V~~~~GDi~RDrgsr~~~~~~~~~pITgL 177 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-----TIVCGF--TN-GLVICYKGDILRDRGSRQDYSHRGKEPITGL 177 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEcccc-----EEEEEe--cC-cEEEEEcCcchhccccceeeeccCCCCceee
Confidence 3 1 112333 233444444433321 233332 11 15667774321111112 2234456778889
Q ss_pred EEecCce--EEEEEcCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEEEecceEEEEcCCCCccc
Q psy3725 561 HIFSEGR--LCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVFHSLAAYVDSQGHKSR 638 (760)
Q Consensus 561 ~~~~~~~--LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~~~gvfVD~~G~rsR 638 (760)
.+..+++ +.|.+++.-.+|.+.|......++|..--++.=. .+-=+..+|..|-+++-.|-|..|+.-
T Consensus 178 ~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCs---------s~~~~t~qfIca~~e~l~fY~sd~~~~- 247 (933)
T KOG2114|consen 178 ALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCS---------SFSDGTYQFICAGSEFLYFYDSDGRGP- 247 (933)
T ss_pred EEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceee---------ecCCCCccEEEecCceEEEEcCCCcce-
Confidence 9987764 5888888899999975441223344222222111 111122357777777778888776532
Q ss_pred ccceecC-CCCc-EEEeeCCeEEEEeC-CeeEE
Q psy3725 639 EKEIMYP-ALPT-GASYMDGQLLIFSE-THVDV 668 (760)
Q Consensus 639 ~~~I~W~-~~P~-~~ay~~PYLlvf~~-~~IEV 668 (760)
-+.++ +.-. ..++...|++++.+ .+.+.
T Consensus 248 --cfaf~~g~kk~~~~~~~g~~L~v~~~~~~~~ 278 (933)
T KOG2114|consen 248 --CFAFEVGEKKEMLVFSFGLLLCVTTDKGTEN 278 (933)
T ss_pred --eeeecCCCeEEEEEEecCEEEEEEccCCCCC
Confidence 23344 2222 33444466666654 34554
No 73
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=92.73 E-value=19 Score=39.91 Aligned_cols=214 Identities=17% Similarity=0.153 Sum_probs=119.1
Q ss_pred CCeeEEEEecCCCeEEEEECCCCeEEEEECCCc---cCC-------CcceeecCcccceEEEEeeeeCCCccceEEEEEE
Q psy3725 456 KKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRAL---DGD-------EVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAV 525 (760)
Q Consensus 456 k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L---~~~-------~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAv 525 (760)
++-.-+.+.++-+.|++-.--...|.++|+.+- ... ...++.-.++-+||+-...-. +. +||+.-
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~--~~---~l~v~D 163 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD--GR---YLVVPD 163 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC--CC---EEEEee
Confidence 444778888887777776544468999999652 211 011232334556886543222 23 677665
Q ss_pred ecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEE---cCCeEEEEecCC-CCceeecCCCCCccccc
Q psy3725 526 KRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGY---QSGFSIYKFSQD-NRPIPLIHQDNPLVSLL 601 (760)
Q Consensus 526 Kr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~---~~gF~ivdl~~~-~~~~~Ll~~~d~sl~f~ 601 (760)
.+ .-+|+.|.+..++......-++.--+-|..|.|-+++++|.-. ++.-.++..++. +...+|-.-.--.-.|.
T Consensus 164 LG--~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 164 LG--TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred cC--CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 44 4467777776665332222233333458889999887766543 233444444321 11112111000000232
Q ss_pred ccCCCCceEEEEe-CCCeEEEEe----cceEEE-EcCCCCccccc-ceecCCC-CcEEEeeC--CeEEEEeCC--eeEEE
Q psy3725 602 TYSPVDALLAIEL-PRGEFLLVF----HSLAAY-VDSQGHKSREK-EIMYPAL-PTGASYMD--GQLLIFSET--HVDVF 669 (760)
Q Consensus 602 ~~~~~~pl~i~~l-~~~EfLLcy----~~~gvf-VD~~G~rsR~~-~I~W~~~-P~~~ay~~--PYLlvf~~~--~IEVr 669 (760)
.... .+++.| .++.||-.= |.+++| ||.+|...+-. ..+=++. |-.|.+.. -||+|.+++ .|.|+
T Consensus 242 g~~~---~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 242 GTNW---AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCCc---eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 2211 244555 478888754 567777 89887766543 2344455 88877754 499999865 58887
Q ss_pred ECc--CCcEEEE
Q psy3725 670 NAE--SGDWLQT 679 (760)
Q Consensus 670 ~i~--tg~lVQt 679 (760)
.++ ||+|-+.
T Consensus 319 ~~d~~TG~L~~~ 330 (346)
T COG2706 319 ERDKETGRLTLL 330 (346)
T ss_pred EEcCCCceEEec
Confidence 774 7877654
No 74
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.55 E-value=5.3 Score=42.04 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Q psy3725 23 YLQALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRS 102 (760)
Q Consensus 23 ylq~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~ 102 (760)
-|+.++..+.+|++++++- -.-+-++....+.=.+-|-...|||++|..
T Consensus 12 ~lek~k~~i~~e~~~~e~e-------------------------------e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~ 60 (230)
T PF10146_consen 12 ELEKLKNEILQEVESLENE-------------------------------EKCLEEYRKEMEELLQERMAHVEELRQINQ 60 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999975 123344444445555667888899999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 103 ELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 103 ~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+...+|.-++.++.........+.++..|...++
T Consensus 61 DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk 94 (230)
T PF10146_consen 61 DINTLENIIKQAESERNKRQEKIQRLYEEYKPLK 94 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888877666665555555544444433
No 75
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=92.28 E-value=1.4 Score=37.60 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=53.0
Q ss_pred HHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 74 MELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 74 ~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
.+...||.-|+.=.|-=+.-+.++..++...-.+..+|.++-..+.+|..|++.|++|+++.+
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355667777777666666777888888889999999999999999999999999999998744
No 76
>KOG4378|consensus
Probab=92.09 E-value=6.4 Score=45.19 Aligned_cols=144 Identities=15% Similarity=0.264 Sum_probs=88.7
Q ss_pred CCCeEEEEEc-CCCCCCceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC--cceeecCcccceEEEE
Q psy3725 432 PKEQLLVVLA-GKQRYVQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE--VEWVKIPETKGCLSFT 508 (760)
Q Consensus 432 ~~~rllvGTe-~l~~~~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~--~~~~kl~etKgc~~f~ 508 (760)
.++-|+.||. +... +...+.....|.-+.+-+.-.-|+++++-+..|.+++.....+-. .+.++.+ +.|..|.
T Consensus 142 gGdiiih~~~t~~~t--t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP-~~gicfs- 217 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKT--TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP-CRGICFS- 217 (673)
T ss_pred CCcEEEEecccCccc--cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC-cCcceec-
Confidence 3445666666 3222 334455556677888888888888888878899999985543211 0112322 2222221
Q ss_pred eeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCc-eEEEEEcCC-eEEEEecCCCC
Q psy3725 509 TGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFSQDNR 586 (760)
Q Consensus 509 ~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~~~~~ 586 (760)
..+ . ..++-|.+-| +|++|.+... +...-+.-..|..+++|..+| .||+|..+| ...|||.+...
T Consensus 218 --psn--e-~l~vsVG~Dk----ki~~yD~~s~----~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 218 --PSN--E-ALLVSVGYDK----KINIYDIRSQ----ASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred --CCc--c-ceEEEecccc----eEEEeecccc----cccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 111 2 2255566666 8999997532 233456667777789999876 899999988 66789976555
Q ss_pred ceeecC
Q psy3725 587 PIPLIH 592 (760)
Q Consensus 587 ~~~Ll~ 592 (760)
+...++
T Consensus 285 Pv~v~s 290 (673)
T KOG4378|consen 285 PVAVRS 290 (673)
T ss_pred CceEee
Confidence 544333
No 77
>KOG1453|consensus
Probab=91.40 E-value=0.05 Score=67.75 Aligned_cols=42 Identities=21% Similarity=0.700 Sum_probs=37.9
Q ss_pred CCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCCc
Q psy3725 220 SPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPP 264 (760)
Q Consensus 220 ~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p~ 264 (760)
.|+.|..|..++|.+ +..|.+|.+.||++|...+...|+...
T Consensus 555 ~P~~c~~c~~~~~~~---~~~c~~c~~~chkkc~~~~~~~~~~~~ 596 (918)
T KOG1453|consen 555 KPAPCRTCETYSWFM---ELECELCRLVCHKKCLEALKSLCGHER 596 (918)
T ss_pred CCcccccccccchhh---hcccceeeeeccccchhhccccCcccc
Confidence 499999999999974 499999999999999999999998644
No 78
>KOG0294|consensus
Probab=91.10 E-value=5 Score=43.74 Aligned_cols=103 Identities=12% Similarity=0.189 Sum_probs=70.6
Q ss_pred CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEE
Q psy3725 454 DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQI 533 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~V 533 (760)
+..+|+-|++-|...|.|.+.| +..|++.+|-.... ...+.-....+..... .+|. +++|...+ .|
T Consensus 126 H~~~Vt~lsiHPS~KLALsVg~-D~~lr~WNLV~Gr~----a~v~~L~~~at~v~w~--~~Gd---~F~v~~~~----~i 191 (362)
T KOG0294|consen 126 HKGQVTDLSIHPSGKLALSVGG-DQVLRTWNLVRGRV----AFVLNLKNKATLVSWS--PQGD---HFVVSGRN----KI 191 (362)
T ss_pred cccccceeEecCCCceEEEEcC-CceeeeehhhcCcc----ceeeccCCcceeeEEc--CCCC---EEEEEecc----EE
Confidence 4456999999999999999877 68899988832221 1122212233332222 3344 56666655 79
Q ss_pred EEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEcC
Q psy3725 534 ILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQS 574 (760)
Q Consensus 534 l~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~ 574 (760)
-+|++...+ .++|+..|-.+.++.|+..+.|.||-..
T Consensus 192 ~i~q~d~A~----v~~~i~~~~r~l~~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 192 DIYQLDNAS----VFREIENPKRILCATFLDGSELLVGGDN 228 (362)
T ss_pred EEEecccHh----HhhhhhccccceeeeecCCceEEEecCC
Confidence 999986543 4568888888999999988799999876
No 79
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=90.82 E-value=27 Score=37.82 Aligned_cols=190 Identities=17% Similarity=0.215 Sum_probs=98.8
Q ss_pred ECCCCeEEEEECCCccCCCcce-eecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe
Q psy3725 474 AGKQRYVRLVPVRALDGDEVEW-VKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI 552 (760)
Q Consensus 474 sgk~r~L~l~~L~~L~~~~~~~-~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~ 552 (760)
...++.|++|++.. .+ .... ..++...+.+.+++. ..+. +|.|+... .-.|..|.++. ...+.....+.
T Consensus 8 ~~~~~~I~~~~~~~-~g-~l~~~~~~~~~~~~~~l~~s--pd~~---~lyv~~~~--~~~i~~~~~~~-~g~l~~~~~~~ 77 (330)
T PRK11028 8 SPESQQIHVWNLNH-EG-ALTLLQVVDVPGQVQPMVIS--PDKR---HLYVGVRP--EFRVLSYRIAD-DGALTFAAESP 77 (330)
T ss_pred cCCCCCEEEEEECC-CC-ceeeeeEEecCCCCccEEEC--CCCC---EEEEEECC--CCcEEEEEECC-CCceEEeeeec
Confidence 34567899998842 11 2112 222222233444332 2334 56666543 33677788752 22344455677
Q ss_pred cCCcceEEEEecCce-EEEEE--cCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEEEe----cc
Q psy3725 553 LPTLAQCIHIFSEGR-LCVGY--QSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVF----HS 625 (760)
Q Consensus 553 lP~~~~sl~~~~~~~-LcVG~--~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy----~~ 625 (760)
.+..+..|.|..+++ |.++. .....+++++.++.....+.. ......|.++.--+++.+|++= +.
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~p~g~~l~v~~~~~~~ 149 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI--------IEGLEGCHSANIDPDNRTLWVPCLKEDR 149 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee--------ccCCCcccEeEeCCCCCEEEEeeCCCCE
Confidence 777788899997764 55554 234677787522222111110 0112334443223455666532 23
Q ss_pred eEEE-EcCCCCccc----ccceecCCCCcEEEeeCC--eEEEEeC--CeeEEEECc--CC--cEEEEEe
Q psy3725 626 LAAY-VDSQGHKSR----EKEIMYPALPTGASYMDG--QLLIFSE--THVDVFNAE--SG--DWLQTVN 681 (760)
Q Consensus 626 ~gvf-VD~~G~rsR----~~~I~W~~~P~~~ay~~P--YLlvf~~--~~IEVr~i~--tg--~lVQtI~ 681 (760)
..+| ++..|.... ...+.=...|..+++..- ||++.++ +.|-++++. +| +++|++.
T Consensus 150 v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 150 IRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred EEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 3444 334453321 011212456888888754 9999874 789999997 34 4578774
No 80
>KOG3640|consensus
Probab=90.78 E-value=0.43 Score=57.82 Aligned_cols=112 Identities=19% Similarity=0.366 Sum_probs=65.5
Q ss_pred CCCcceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcc
Q psy3725 278 GIGTAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDI 357 (760)
Q Consensus 278 ~~Gt~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~di 357 (760)
++...|.|.+.+...+-.-..|.|.||+|.|+.+++|-.+.|.-.+ .+..-|||.. .+ +.-|-.+..||
T Consensus 987 ~idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK---~Pig~IDLt~--CT------sq~ie~a~rdi 1055 (1116)
T KOG3640|consen 987 AIDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEKRK---VPIGQIDLTK--CT------SQSIEEARRDI 1055 (1116)
T ss_pred ccceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhccc---Ccceeeehhh--hh------ccccccchhhh
Confidence 3344677887766533333459999999999999999776654322 1333455421 00 00111222222
Q ss_pred ---ceeeeeeccc---------CCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHh
Q psy3725 358 ---PCIFRITTSL---------MDPPGTKNHTLMLADSDTEKTKWVVALSELHRILK 402 (760)
Q Consensus 358 ---p~if~it~s~---------l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~ 402 (760)
|--|+|..-. +.-+ +.-..|-|+|..+++.|+.+|+.....|+
T Consensus 1056 car~ntFhie~~rPl~~Dqep~~ie~--r~Rv~LaADTkeel~~Wls~iN~tL~~LR 1110 (1116)
T KOG3640|consen 1056 CARPNTFHIEVWRPLEDDQEPLLIEK--RLRVMLAADTKEELQSWLSAINDTLKQLR 1110 (1116)
T ss_pred ccCCceeEEEeecccccccCcchhhh--cceeeeecccHHHHHHHHHHHHHHHHHHH
Confidence 3334443100 0011 12367889999999999999999888776
No 81
>KOG0291|consensus
Probab=90.33 E-value=50 Score=40.08 Aligned_cols=245 Identities=13% Similarity=0.141 Sum_probs=134.8
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCCCceEEcC-CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRYVQIARVG-DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE 492 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~~~l~rv~-~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~ 492 (760)
...++|++.- |+.+|+-|+| | ..+.-=++..- +...|+-+.+...-+.++..|= +..|+.++|.....
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSL-DGtVRAwDlkRYrN-- 426 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSL-DGTVRAWDLKRYRN-- 426 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeec-CCeEEeeeecccce--
Confidence 4568999863 4557999999 3 22221122222 4567999999988899888874 46899999865432
Q ss_pred cceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe--cCCcceEEEEecCceEEE
Q psy3725 493 VEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI--LPTLAQCIHIFSEGRLCV 570 (760)
Q Consensus 493 ~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~--lP~~~~sl~~~~~~~LcV 570 (760)
+..+.-....+|-++.....|. .+|++- ++..-|++|....++ +.|+- .-+||.+|+|...|.+.+
T Consensus 427 --fRTft~P~p~QfscvavD~sGe---lV~AG~--~d~F~IfvWS~qTGq-----llDiLsGHEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 427 --FRTFTSPEPIQFSCVAVDPSGE---LVCAGA--QDSFEIFVWSVQTGQ-----LLDILSGHEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred --eeeecCCCceeeeEEEEcCCCC---EEEeec--cceEEEEEEEeecCe-----eeehhcCCCCcceeeEEccccCeEE
Confidence 3233333345555555554566 677776 568889999976544 22321 246788888877665555
Q ss_pred EE--cCCeEEEEecCC-CCceeecCCCCC-cccccccCCCCceEEEEeCCCeEEEEecceEEEE-------cCCCCcccc
Q psy3725 571 GY--QSGFSIYKFSQD-NRPIPLIHQDNP-LVSLLTYSPVDALLAIELPRGEFLLVFHSLAAYV-------DSQGHKSRE 639 (760)
Q Consensus 571 G~--~~gF~ivdl~~~-~~~~~Ll~~~d~-sl~f~~~~~~~pl~i~~l~~~EfLLcy~~~gvfV-------D~~G~rsR~ 639 (760)
.. .+.-.+.|+-+. +++.+|-...|. .++|-.. -+-+|+--+ ++++-.---+-++-+ |..|-|-+.
T Consensus 495 S~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPd--G~elaVaTl-dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~ 571 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPD--GKELAVATL-DGQITFFDIKEAVQVGSIDGRKDLSGGRKET 571 (893)
T ss_pred eccccceEEEEEeeccCceeeeEeeccceeEEEEcCC--CCeEEEEEe-cceEEEEEhhhceeeccccchhhcccccccc
Confidence 33 344556666422 233444333222 2223211 111232222 222111111112222 222222222
Q ss_pred cceecC-----CCCcEEEeeCC--eEEEEe-CCeeEEEECcCCcEEEEEecCC
Q psy3725 640 KEIMYP-----ALPTGASYMDG--QLLIFS-ETHVDVFNAESGDWLQTVNIRR 684 (760)
Q Consensus 640 ~~I~W~-----~~P~~~ay~~P--YLlvf~-~~~IEVr~i~tg~lVQtI~~~~ 684 (760)
..+.=. ..-+.+.|..- ||++-. .+.|-|+++.++-++|......
T Consensus 572 D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~ 624 (893)
T KOG0291|consen 572 DRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISD 624 (893)
T ss_pred ceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEecc
Confidence 223222 23356777654 888876 5789999999999999864433
No 82
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.93 E-value=0.37 Score=43.46 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=23.4
Q ss_pred cceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 374 KNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 374 ~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
+-+++++|+|..||++|+++|.+++.
T Consensus 70 ~KSf~~~asS~~Er~eW~~hI~~~~~ 95 (96)
T cd01228 70 GKSYTFLLSSDYERSEWRESIQKLQK 95 (96)
T ss_pred CceEEEEecCHHHHHHHHHHHHHHhc
Confidence 36899999999999999999999874
No 83
>KOG1169|consensus
Probab=89.12 E-value=0.17 Score=59.61 Aligned_cols=56 Identities=27% Similarity=0.692 Sum_probs=47.4
Q ss_pred CCCCceeEEeeecCCcccCCCcccc--ccc-ccCeeeecCCCcccccccccccCCCCCC
Q psy3725 207 SSKHHQFITRTFTSPTKCNHCTSLM--VGL-TRQGVVCDICGFACHLSCCDKVPPSCPV 262 (760)
Q Consensus 207 ~~~~H~F~~~~f~~pt~C~~C~~~i--~Gl-~rQG~~C~~C~~~cH~kC~~~vp~~C~~ 262 (760)
....|-+....+..|++|..|.+.. -|. ..||+.|.-|++.+|..|...+...|..
T Consensus 95 ~~~~~~~~~~~~~~~~~c~~c~~~c~~~~~~~~~g~~C~~C~~~vh~~C~~~~~~~~~~ 153 (634)
T KOG1169|consen 95 TDGDHVWRPKHLWKPAYCFVCPKSCGSCGVGIKQGLCCDWCGRTVHERCVRRADPECQC 153 (634)
T ss_pred ccCceeccCCCCCCCceEEeccccccchhhcccCceeeccccchHHHHHHhhcCccccc
Confidence 4567889999999999999998864 333 4789999999999999999999988654
No 84
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.10 E-value=0.89 Score=41.41 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=30.8
Q ss_pred CccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 355 KDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 355 ~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
.| |+-|.|.... .+...+.+.|.|..+|+.|+.+|+.+
T Consensus 57 ~d-~~~F~v~~~~----~p~~~~~l~A~s~e~K~~W~~~i~~~ 94 (97)
T cd01222 57 GE-PLCFRVIPFD----DPKGALQLTARNREEKRIWTQQLKRA 94 (97)
T ss_pred CC-CcEEEEEecC----CCceEEEEEecCHHHHHHHHHHHHHH
Confidence 45 9999996443 22468999999999999999999876
No 85
>KOG0296|consensus
Probab=88.93 E-value=43 Score=37.36 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=94.1
Q ss_pred eEEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEcCC--eEEEEecCCCCceeecCC-----------CCCc
Q psy3725 531 SQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSG--FSIYKFSQDNRPIPLIHQ-----------DNPL 597 (760)
Q Consensus 531 ~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~g--F~ivdl~~~~~~~~Ll~~-----------~d~s 597 (760)
-+|.+|.+....+.|+.-..=..+.+ +|.+...+.+.+-+.++ +.+++.. .+++..-.++ .+.+
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e~~~~~--~~~~~~~~~~~~~g~~e~~~~~~~~~-sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAEGLELP--CISLNLAGSTLTKGNSEGVACGVNNG-SGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred ceEEEEecCCCceeEEecccccCcCC--ccccccccceeEeccCCccEEEEccc-cceEEEecCCCCccccccchhhhhh
Confidence 38899998665554443211144444 45555445555555544 3333332 3333332221 2456
Q ss_pred ccccccCCCCceEEEEeCCCeEEEEecceEEEEcCCCCccccc--------ceecCCCCcEEEeeCCeEEEEeCCe-eEE
Q psy3725 598 VSLLTYSPVDALLAIELPRGEFLLVFHSLAAYVDSQGHKSREK--------EIMYPALPTGASYMDGQLLIFSETH-VDV 668 (760)
Q Consensus 598 l~f~~~~~~~pl~i~~l~~~EfLLcy~~~gvfVD~~G~rsR~~--------~I~W~~~P~~~ay~~PYLlvf~~~~-IEV 668 (760)
+.|......-|+++.-.-+++++ .| |..-++.|.. .|+|.. .+||++-.-++ |-.
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~-iy-------D~a~~~~R~~c~he~~V~~l~w~~--------t~~l~t~c~~g~v~~ 352 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIA-IY-------DLAASTLRHICEHEDGVTKLKWLN--------TDYLLTACANGKVRQ 352 (399)
T ss_pred hhhcccccccchhhcccccceEE-EE-------ecccchhheeccCCCceEEEEEcC--------cchheeeccCceEEe
Confidence 67777777778877766566554 23 4444444431 355554 26888887665 799
Q ss_pred EECcCCcEEEEEecCCceec----CCCCCEEEEecCCccEEEEe
Q psy3725 669 FNAESGDWLQTVNIRRALPL----DTRGSLCFSLANDIPYVVYL 708 (760)
Q Consensus 669 r~i~tg~lVQtI~~~~ir~L----~s~G~l~l~s~~~~~~~~~~ 708 (760)
++..||.++-+..+.+...| ..++.+.+...++-...+|.
T Consensus 353 wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 353 WDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred eeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 99999999999988885443 35777777655555555554
No 86
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=88.92 E-value=0.16 Score=35.93 Aligned_cols=29 Identities=28% Similarity=0.684 Sum_probs=13.2
Q ss_pred ccCCCcccccccccCeeeecCCCcccccccc
Q psy3725 223 KCNHCTSLMVGLTRQGVVCDICGFACHLSCC 253 (760)
Q Consensus 223 ~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~ 253 (760)
.|+.|+.-+.+ ...|.|..|.|..|..|+
T Consensus 2 ~C~~C~~~~~~--~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG--GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S----EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC--CceEECccCCCccChhcC
Confidence 58999987654 468999999999999985
No 87
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=88.72 E-value=32 Score=35.55 Aligned_cols=199 Identities=12% Similarity=0.124 Sum_probs=98.7
Q ss_pred CCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEE
Q psy3725 456 KKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIIL 535 (760)
Q Consensus 456 k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ 535 (760)
..+..+.+.++-+.+++.++.+..|+++++..... ...+....+...++. ...+. .++++... .-.|.+
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~----~~~~~~~~~~~~~~~--~~~g~---~l~~~~~~--~~~l~~ 99 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV----IGTLPSGPDPELFAL--HPNGK---ILYIANED--DNLVTV 99 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE----EEeccCCCCccEEEE--CCCCC---EEEEEcCC--CCeEEE
Confidence 44667888888777766666667899998754221 112222222333332 12233 45554321 126888
Q ss_pred EEecCCcccceeeeeEecCCcceEEEEecCceEE-EEEcCC--eEEEEecCCCCceeecCCCCCcccccccCCCCceEEE
Q psy3725 536 YEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLC-VGYQSG--FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAI 612 (760)
Q Consensus 536 ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~Lc-VG~~~g--F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~ 612 (760)
|.+... +.+..+..+..+.++.|..+|.+. ++...+ ...+|.. +......... ...|..+.
T Consensus 100 ~d~~~~----~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~-~~~~~~~~~~-----------~~~~~~~~ 163 (300)
T TIGR03866 100 IDIETR----KVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK-TYEIVDNVLV-----------DQRPRFAE 163 (300)
T ss_pred EECCCC----eEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCC-CCeEEEEEEc-----------CCCccEEE
Confidence 886532 334455556667789998876544 444332 3445654 2222111100 01121111
Q ss_pred EeCCCeEEE-E--ecceEEEEcCC-CCcccccceec------CCCCcEEEeeC--CeEEEE--eCCeeEEEECcCCcEEE
Q psy3725 613 ELPRGEFLL-V--FHSLAAYVDSQ-GHKSREKEIMY------PALPTGASYMD--GQLLIF--SETHVDVFNAESGDWLQ 678 (760)
Q Consensus 613 ~l~~~EfLL-c--y~~~gvfVD~~-G~rsR~~~I~W------~~~P~~~ay~~--PYLlvf--~~~~IEVr~i~tg~lVQ 678 (760)
--.++.+|+ . .+..-.+.|.. |+..+...+.+ ...|..++|.. .++++. ..+.|.|+++.+++.++
T Consensus 164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 164 FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 112334442 1 12222334443 33222211221 12456677753 365543 35689999999999988
Q ss_pred EEe
Q psy3725 679 TVN 681 (760)
Q Consensus 679 tI~ 681 (760)
.+.
T Consensus 244 ~~~ 246 (300)
T TIGR03866 244 YLL 246 (300)
T ss_pred EEE
Confidence 763
No 88
>PF15404 PH_4: Pleckstrin homology domain
Probab=88.63 E-value=3.5 Score=41.91 Aligned_cols=28 Identities=29% Similarity=0.572 Sum_probs=22.6
Q ss_pred ccCCCCCCcceEEEeeCCHHHHHHHHHHHH
Q psy3725 366 SLMDPPGTKNHTLMLADSDTEKTKWVVALS 395 (760)
Q Consensus 366 s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~ 395 (760)
+.|+.+| .++.++|-|-+||+-||-+|.
T Consensus 155 ~~Lg~~g--ks~VF~ARSRqERD~WV~~I~ 182 (185)
T PF15404_consen 155 SRLGVSG--KSMVFMARSRQERDLWVLAIN 182 (185)
T ss_pred cccCCCC--cEEEEEeccHHHHHHHHHHHH
Confidence 4445444 579999999999999999985
No 89
>PTZ00420 coronin; Provisional
Probab=88.33 E-value=64 Score=38.58 Aligned_cols=199 Identities=12% Similarity=0.140 Sum_probs=101.4
Q ss_pred CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccC--CC-cce-eecCc-ccceEEEEeeeeCCCccceEEEEE-Eec
Q psy3725 454 DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDG--DE-VEW-VKIPE-TKGCLSFTTGPLTHTRTQHCLALA-VKR 527 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~--~~-~~~-~kl~e-tKgc~~f~~g~~~~~~~~~~LcVA-vKr 527 (760)
+...|..|+.-+..+-+|+-++.+..|+++++..-.. .. ..+ ..+.. ...+..++... .+. .+|+.+ .-.
T Consensus 73 H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P--~g~--~iLaSgS~Dg 148 (568)
T PTZ00420 73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP--MNY--YIMCSSGFDS 148 (568)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC--CCC--eEEEEEeCCC
Confidence 4568999999987433444455578999999853110 00 001 11111 12222222211 111 133333 223
Q ss_pred CCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEE-EEc-CCeEEEEecCCCCce-eecCCCCCcccccccC
Q psy3725 528 QNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCV-GYQ-SGFSIYKFSQDNRPI-PLIHQDNPLVSLLTYS 604 (760)
Q Consensus 528 ~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcV-G~~-~gF~ivdl~~~~~~~-~Ll~~~d~sl~f~~~~ 604 (760)
+|.+|.+.... ....+..+..+.++.|..+|.+.+ |+. +...++|+. ++... .+. .+.
T Consensus 149 ----tIrIWDl~tg~----~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~R-sg~~i~tl~----------gH~ 209 (568)
T PTZ00420 149 ----FVNIWDIENEK----RAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR-KQEIASSFH----------IHD 209 (568)
T ss_pred ----eEEEEECCCCc----EEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECC-CCcEEEEEe----------ccc
Confidence 78889976543 233455678899999998775555 553 348888886 33222 221 111
Q ss_pred C---CCceEEEEe-CCCeEEEE--ecc-----eEEEEcC--CCCcccccceecCCCCcEEEeeCC----eEEEEeCCeeE
Q psy3725 605 P---VDALLAIEL-PRGEFLLV--FHS-----LAAYVDS--QGHKSREKEIMYPALPTGASYMDG----QLLIFSETHVD 667 (760)
Q Consensus 605 ~---~~pl~i~~l-~~~EfLLc--y~~-----~gvfVD~--~G~rsR~~~I~W~~~P~~~ay~~P----YLlvf~~~~IE 667 (760)
+ ...+.+..+ +++.+|+. |+. +.+| |. .+.+.....+.=...+....|..+ |+.+-.++.|-
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLW-Dlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLW-DLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEE-ECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 1 111111112 35566663 553 3344 32 244443333333333333445554 44445688899
Q ss_pred EEECcCCcE
Q psy3725 668 VFNAESGDW 676 (760)
Q Consensus 668 Vr~i~tg~l 676 (760)
++++.++.+
T Consensus 289 ~~e~~~~~~ 297 (568)
T PTZ00420 289 YYQHSLGSI 297 (568)
T ss_pred EEEccCCcE
Confidence 999988753
No 90
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=88.32 E-value=49 Score=37.23 Aligned_cols=195 Identities=13% Similarity=0.162 Sum_probs=104.6
Q ss_pred CeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCccccee
Q psy3725 468 QLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKR 547 (760)
Q Consensus 468 ~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk 547 (760)
+++++.--...+|.+++.....- ..+++--.+.|.... .-..++ ++.|+- |.+ .|-++.+.. .+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~----~~~i~~~~~~h~~~~-~s~Dgr---~~yv~~-rdg--~vsviD~~~----~~~ 70 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKV----VARIPTGGAPHAGLK-FSPDGR---YLYVAN-RDG--TVSVIDLAT----GKV 70 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SE----EEEEE-STTEEEEEE--TT-SS---EEEEEE-TTS--EEEEEETTS----SSE
T ss_pred cEEEEEecCCCEEEEEECCCCeE----EEEEcCCCCceeEEE-ecCCCC---EEEEEc-CCC--eEEEEECCc----ccE
Confidence 55555443357888888754321 123332233443221 112244 666664 433 566777543 357
Q ss_pred eeeEecCCcceEEEEecCce-EEEEE--cCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEe-CCCeEEEEe
Q psy3725 548 LHEVILPTLAQCIHIFSEGR-LCVGY--QSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIEL-PRGEFLLVF 623 (760)
Q Consensus 548 ~kE~~lP~~~~sl~~~~~~~-LcVG~--~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l-~~~EfLLcy 623 (760)
++++.+-..+..+++..+|+ |.|++ ...+.++|.. +.++..-+...... .-. ...+..+++.. .+.+|.+..
T Consensus 71 v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~-tle~v~~I~~~~~~--~~~-~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 71 VATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE-TLEPVKTIPTGGMP--VDG-PESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp EEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETT-T--EEEEEE--EE---TTT-S---EEEEEE-SSSSEEEEEE
T ss_pred EEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccc-cccceeeccccccc--ccc-cCCCceeEEecCCCCEEEEEE
Confidence 88999999999999998884 55665 4668888876 44443222111000 000 12233455544 355677664
Q ss_pred cc--eEEEEcCCC-CcccccceecCCCCcEEEeeCC--eEEE--EeCCeeEEEECcCCcEEEEEe
Q psy3725 624 HS--LAAYVDSQG-HKSREKEIMYPALPTGASYMDG--QLLI--FSETHVDVFNAESGDWLQTVN 681 (760)
Q Consensus 624 ~~--~gvfVD~~G-~rsR~~~I~W~~~P~~~ay~~P--YLlv--f~~~~IEVr~i~tg~lVQtI~ 681 (760)
.+ .--.||... ++.....+.=...|..+.+... |+++ +..+.|-|.+..++.++..|.
T Consensus 147 kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 147 KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred ccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 32 233466433 3333345666677888877765 7666 568899999999999998874
No 91
>KOG1273|consensus
Probab=87.76 E-value=48 Score=36.49 Aligned_cols=246 Identities=16% Similarity=0.243 Sum_probs=127.1
Q ss_pred eEEEEe-cCCCeEEEEEc-C------CCCCCceEEcC--CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcc
Q psy3725 425 IYQMDY-IPKEQLLVVLA-G------KQRYVQIARVG--DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVE 494 (760)
Q Consensus 425 i~Caa~-~~~~rllvGTe-~------l~~~~~l~rv~--~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~ 494 (760)
++|... -+|+.|++|+. | +..- .+.++. +.++|+.|.--++-.+|+. +.++..+.++++ +.+.-+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-~iar~lsaH~~pi~sl~WS~dgr~Llt-sS~D~si~lwDl--~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-RIARMLSAHVRPITSLCWSRDGRKLLT-SSRDWSIKLWDL--LKGSPLK 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc-chhhhhhccccceeEEEecCCCCEeee-ecCCceeEEEec--cCCCcee
Confidence 566653 35778999987 3 2222 344443 6789999998888777766 456789999988 4443222
Q ss_pred eeecCcc-cceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCc-ccceeeeeEecCCcceEEEEecCc-eEEEE
Q psy3725 495 WVKIPET-KGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTK-TRHKRLHEVILPTLAQCIHIFSEG-RLCVG 571 (760)
Q Consensus 495 ~~kl~et-Kgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k-~~fkk~kE~~lP~~~~sl~~~~~~-~LcVG 571 (760)
-+.++-. -+|++-- .+.+. +++.-++. +-+|..+.- .+ ..+-+--+..+...+.+..|-+.| .|.+|
T Consensus 102 rirf~spv~~~q~hp---~k~n~---~va~~~~~--sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 102 RIRFDSPVWGAQWHP---RKRNK---CVATIMEE--SPVVIDFSD--PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITG 171 (405)
T ss_pred EEEccCccceeeecc---ccCCe---EEEEEecC--CcEEEEecC--CceeeccCCCccccccccccccccCCCCEEEEe
Confidence 2333211 1333321 11122 44444443 223444431 11 111112233444444444455444 78889
Q ss_pred EcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEe-CCCeEEEEecce---EEE----EcCCC---Ccccc
Q psy3725 572 YQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIEL-PRGEFLLVFHSL---AAY----VDSQG---HKSRE 639 (760)
Q Consensus 572 ~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l-~~~EfLLcy~~~---gvf----VD~~G---~rsR~ 639 (760)
..|| +.+|+.+ +. ..+. |+.- ....++.-+.+ -+++||+.-..- -+| +|..| .+.-.
T Consensus 172 tsKGkllv~~a~-t~---e~va----s~ri---ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~ 240 (405)
T KOG1273|consen 172 TSKGKLLVYDAE-TL---ECVA----SFRI---TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPE 240 (405)
T ss_pred cCcceEEEEecc-hh---eeee----eeee---chheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChh
Confidence 9998 6777775 32 2221 1100 01122222222 245665422111 111 22222 22211
Q ss_pred c-------ceecCCCCcEEEeeC--CeEEEEeC--CeeEEEECcCCcEEEEEecCC-----------ceecC---CCCCE
Q psy3725 640 K-------EIMYPALPTGASYMD--GQLLIFSE--THVDVFNAESGDWLQTVNIRR-----------ALPLD---TRGSL 694 (760)
Q Consensus 640 ~-------~I~W~~~P~~~ay~~--PYLlvf~~--~~IEVr~i~tg~lVQtI~~~~-----------ir~L~---s~G~l 694 (760)
+ .+.|. .+.|.. -||++-+. +.+-|+.-.+|.||-++.|.+ +||.. .+|.+
T Consensus 241 ~K~qDvVNk~~Wk----~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v 316 (405)
T KOG1273|consen 241 HKLQDVVNKLQWK----KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVV 316 (405)
T ss_pred HHHHHHHhhhhhh----heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCce
Confidence 0 14454 344443 49998874 468999999999999998877 45543 58888
Q ss_pred EEEec
Q psy3725 695 CFSLA 699 (760)
Q Consensus 695 ~l~s~ 699 (760)
++-+.
T Consensus 317 ~iw~~ 321 (405)
T KOG1273|consen 317 YIWAV 321 (405)
T ss_pred EEEEe
Confidence 88654
No 92
>KOG3751|consensus
Probab=87.73 E-value=0.99 Score=51.77 Aligned_cols=106 Identities=13% Similarity=0.276 Sum_probs=58.5
Q ss_pred eeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCC-eEEEeeccCcccccCCCccceee
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDED-FAVSGVRESDVIHATKKDIPCIF 361 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~-fsV~~V~~sdvi~a~~~dip~if 361 (760)
++|.+-. ....||+|+|.|++|-...|+++-..-.+++. ......|+-+.+ |+.-.- .=-+.+..|.=+.|
T Consensus 319 i~GfL~~--K~dgkKsWKk~yf~LR~SGLYys~K~tsk~~r---~Lq~l~~~~~snVYt~i~~---rKkyksPTd~~f~~ 390 (622)
T KOG3751|consen 319 IQGFLYL--KEDGKKSWKKHYFVLRRSGLYYSTKGTSKEPR---HLQCLADLHSSNVYTGIGG---RKKYKSPTDYGFCI 390 (622)
T ss_pred ccceeee--cccccccceeEEEEEecCcceEccCCCCCCch---hhHHHHhcccCceEEeecc---hhccCCCCCceEEe
Confidence 4566532 23347999999999999997777554433321 111223333332 222110 11122233444444
Q ss_pred eeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 362 RITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 362 ~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
|- .-+..++ +.-=+|+|+.++.+++|+.||--++-
T Consensus 391 K~--~~~~~~~-r~lk~lCAEDe~t~~~WltAiRl~Ky 425 (622)
T KOG3751|consen 391 KP--NKLRNKR-RFLKMLCAEDEQTRTCWLTAIRLLKY 425 (622)
T ss_pred ee--ccccCcc-cceeeeecccchhHHHHHHHHHHHHH
Confidence 44 3443322 33347899999999999999865543
No 93
>KOG2315|consensus
Probab=87.56 E-value=54 Score=38.44 Aligned_cols=213 Identities=11% Similarity=0.201 Sum_probs=121.2
Q ss_pred EEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEec--CCceEEEEEEe
Q psy3725 461 MDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKR--QNSSQIILYEI 538 (760)
Q Consensus 461 I~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr--~~~~~Vl~ye~ 538 (760)
+..-+++.+..-+++ ..|+.|++..+.. ...||. ..|...|..+.-.. ...+||.+.- ..-..|.+|..
T Consensus 131 ~qfs~dEsl~arlv~--nev~f~~~~~f~~---~~~kl~-~~~i~~f~lSpgp~---~~~vAvyvPe~kGaPa~vri~~~ 201 (566)
T KOG2315|consen 131 PQFSIDESLAARLVS--NEVQFYDLGSFKT---IQHKLS-VSGITMLSLSPGPE---PPFVAVYVPEKKGAPASVRIYKY 201 (566)
T ss_pred cccccchhhhhhhhc--ceEEEEecCCccc---eeeeee-ccceeeEEecCCCC---CceEEEEccCCCCCCcEEEEecc
Confidence 334455666666775 6899999977544 235555 45666676644322 2356666532 12445666665
Q ss_pred cCCcc-cceeeeeEecCCcceEEEEec--CceEEEEEcC------------CeEEEEecCCCCceeecCCCCCccccccc
Q psy3725 539 TRTKT-RHKRLHEVILPTLAQCIHIFS--EGRLCVGYQS------------GFSIYKFSQDNRPIPLIHQDNPLVSLLTY 603 (760)
Q Consensus 539 ~~~k~-~fkk~kE~~lP~~~~sl~~~~--~~~LcVG~~~------------gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~ 603 (760)
..... .-.-.+-|.-.+.|+ |.|-. .+-||+.... ..++++++|+....+|
T Consensus 202 ~~~~~~~~~a~ksFFkadkvq-m~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L------------- 267 (566)
T KOG2315|consen 202 PEEGQHQPVANKSFFKADKVQ-MKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL------------- 267 (566)
T ss_pred ccccccchhhhccccccceeE-EEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-------------
Confidence 42110 111234566666664 67763 3355555431 0122233211111111
Q ss_pred CCCCceEEEEe--CCCeEEEEec---ceEEEEcCCCCcccccceecCCCCcEEEeeCC---eEEEEe----CCeeEEEEC
Q psy3725 604 SPVDALLAIEL--PRGEFLLVFH---SLAAYVDSQGHKSREKEIMYPALPTGASYMDG---QLLIFS----ETHVDVFNA 671 (760)
Q Consensus 604 ~~~~pl~i~~l--~~~EfLLcy~---~~gvfVD~~G~rsR~~~I~W~~~P~~~ay~~P---YLlvf~----~~~IEVr~i 671 (760)
..-.|+.-+.- +..||-.||- ...-+-|..|++. ..++..|-.-+|..| ||++.. +..|||+|+
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v----~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV----FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe----EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 12356544443 3569999994 3344457777766 678889998888888 555443 468999999
Q ss_pred cCCcEEEEEecCCceec--CCCCCEEEEecC
Q psy3725 672 ESGDWLQTVNIRRALPL--DTRGSLCFSLAN 700 (760)
Q Consensus 672 ~tg~lVQtI~~~~ir~L--~s~G~l~l~s~~ 700 (760)
.+..+|-.+.-.+.-.. ..+|.-|+..+.
T Consensus 344 ~n~K~i~~~~a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 344 PNRKLIAKFKAANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred cchhhccccccCCceEEEEcCCCcEEEEEec
Confidence 99998888866665443 357777775543
No 94
>KOG2048|consensus
Probab=86.97 E-value=77 Score=38.00 Aligned_cols=235 Identities=15% Similarity=0.188 Sum_probs=131.7
Q ss_pred eecCCCCeeEEEEecCCC-eEEEE-EcC------CCCC---CceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEEC
Q psy3725 417 ARVGDTKKIYQMDYIPKE-QLLVV-LAG------KQRY---VQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPV 485 (760)
Q Consensus 417 ~~d~~~~~i~Caa~~~~~-rllvG-Te~------l~~~---~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L 485 (760)
++|=.+..|.|.|.-... +|++| |+| +..+ ......+..+.|..|.-. |.+-|..+.. +..|.-+++
T Consensus 20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~-sg~i~EwDl 97 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGL-SGSITEWDL 97 (691)
T ss_pred EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecC-CceEEEEec
Confidence 466568899999975544 59999 442 3332 223334556788888877 4455555544 568888888
Q ss_pred CCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEec-CCcceEEEEec
Q psy3725 486 RALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVIL-PTLAQCIHIFS 564 (760)
Q Consensus 486 ~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~l-P~~~~sl~~~~ 564 (760)
..+.. .+.++ .-|-..-++..+..+. .+.|..-- . .++.+.++..+-.|+. -|.- -+.+-++.|-+
T Consensus 98 ~~lk~----~~~~d-~~gg~IWsiai~p~~~---~l~Igcdd--G-vl~~~s~~p~~I~~~r--~l~rq~sRvLslsw~~ 164 (691)
T KOG2048|consen 98 HTLKQ----KYNID-SNGGAIWSIAINPENT---ILAIGCDD--G-VLYDFSIGPDKITYKR--SLMRQKSRVLSLSWNP 164 (691)
T ss_pred ccCce----eEEec-CCCcceeEEEeCCccc---eEEeecCC--c-eEEEEecCCceEEEEe--ecccccceEEEEEecC
Confidence 76654 12222 2222233333333333 45555421 2 4444555444433332 1222 36677899998
Q ss_pred Cce-EEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEEEecceEEEEcCCCCcccccce
Q psy3725 565 EGR-LCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVFHSLAAYVDSQGHKSREKEI 642 (760)
Q Consensus 565 ~~~-LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~~~gvfVD~~G~rsR~~~I 642 (760)
++. |..||..| -.+.|.. .+.. +.++... +|.-++ |...|
T Consensus 165 ~~~~i~~Gs~Dg~Iriwd~~-~~~t---------------------~~~~~~~--------------~d~l~k--~~~~i 206 (691)
T KOG2048|consen 165 TGTKIAGGSIDGVIRIWDVK-SGQT---------------------LHIITMQ--------------LDRLSK--REPTI 206 (691)
T ss_pred CccEEEecccCceEEEEEcC-CCce---------------------EEEeeec--------------cccccc--CCceE
Confidence 874 88888876 5666664 1110 0011110 232222 23458
Q ss_pred ecCCCCcEEEeeCCeEEEEe--CCeeEEEECcCCcEEEEEe--cCCceec---CCCCCEEEEecCCccEEEEeec
Q psy3725 643 MYPALPTGASYMDGQLLIFS--ETHVDVFNAESGDWLQTVN--IRRALPL---DTRGSLCFSLANDIPYVVYLAN 710 (760)
Q Consensus 643 ~W~~~P~~~ay~~PYLlvf~--~~~IEVr~i~tg~lVQtI~--~~~ir~L---~s~G~l~l~s~~~~~~~~~~~~ 710 (760)
-|+ +.|..+-.++-. ..+|..++..+|.|+|.+. -.++-.| +++..+|.++.+ .++|-|..+
T Consensus 207 VWS-----v~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd-~~ii~~~~~ 275 (691)
T KOG2048|consen 207 VWS-----VLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVD-PKIIQYSLT 275 (691)
T ss_pred EEE-----EEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCC-CceEEEEec
Confidence 885 667777555554 3579999999999999963 3334333 234666666665 666666544
No 95
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.91 E-value=3 Score=44.60 Aligned_cols=63 Identities=16% Similarity=0.328 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 78 NLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 78 ~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
+-++.|..=-..++.|+.||.........+.++.++.++++.++..||+.+++++++++.++.
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666677888999999999999999999999999999999999999999998775544
No 96
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=86.24 E-value=1.7 Score=39.83 Aligned_cols=49 Identities=20% Similarity=0.420 Sum_probs=36.0
Q ss_pred CCeEEEeeccCcccccCCCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 337 EDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 337 ~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
+.+.|..+..++ .++-.|+|.+ .| .+-.+.|+|..+|.+|+++|+++.+
T Consensus 51 ~~i~V~ni~D~~-------~~kNafki~t----~~---~s~i~qaes~~~K~eWl~~le~a~~ 99 (100)
T cd01226 51 NSVAVVNVKDRE-------NAKKVLKLLI----FP---ESRIYQCESARIKTEWFEELEQAKR 99 (100)
T ss_pred HHeEEEecCCCc-------CcCceEEEEe----CC---ccEEEEeCCHHHHHHHHHHHHHHhc
Confidence 335555555433 4778899952 22 4568999999999999999999864
No 97
>KOG0690|consensus
Probab=86.18 E-value=1.5 Score=48.12 Aligned_cols=106 Identities=22% Similarity=0.376 Sum_probs=63.4
Q ss_pred ceeeeeecccccccccceEEEEEEE-eCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 282 AYEGYVKVPKTGGVKKGWVRQFVVV-CDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 282 ~~eG~vkvp~~~~~kkgw~r~~~~l-~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
.-|||+ -|.|..-+.|..+|+.| .|..|+=|-..+... +|.+.| =+.|+|.... .+. ..+--|..
T Consensus 16 vkEgWl--hKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~-~~~p~p-------LNnF~v~~cq---~m~-~erPrPnt 81 (516)
T KOG0690|consen 16 VKEGWL--HKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEV-QPTPEP-------LNNFMVRDCQ---TMK-TERPRPNT 81 (516)
T ss_pred HHhhhH--hhcchhhhcccceEEEEeeCCceEeeccCCccC-CCCccc-------ccchhhhhhh---hhh-ccCCCCce
Confidence 357887 34444457897777766 566788886555322 221111 2346764321 111 12234677
Q ss_pred eeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHhhc
Q psy3725 361 FRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILKRN 404 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~~~ 404 (760)
|-|. .|-|.- --.-+++++|..+|++|.+||+.+...+++.
T Consensus 82 FiiR--cLQWTT-VIERTF~ves~~eRq~W~~AIq~vsn~l~q~ 122 (516)
T KOG0690|consen 82 FIIR--CLQWTT-VIERTFYVESAEERQEWIEAIQAVSNRLKQE 122 (516)
T ss_pred EEEE--eeeeee-eeeeeeecCCHHHHHHHHHHHHHHhhhhhhh
Confidence 7775 343422 1245799999999999999999987765544
No 98
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=85.65 E-value=2.9 Score=38.91 Aligned_cols=97 Identities=13% Similarity=0.276 Sum_probs=59.4
Q ss_pred eeeecccc--cccccceEEEEEEEeCcEEEEEecCCCCC---CCCccceeEEeecCCCCeEEEeec-cCcccccCCCccc
Q psy3725 285 GYVKVPKT--GGVKKGWVRQFVVVCDFKLFLYDISPDRN---ALPAVYVSLVLDMRDEDFAVSGVR-ESDVIHATKKDIP 358 (760)
Q Consensus 285 G~vkvp~~--~~~kkgw~r~~~~l~~~kL~~yd~~~~~~---~~p~~~~~~~ldl~d~~fsV~~V~-~sdvi~a~~~dip 358 (760)
||+.--.. +...+.|+.+|++|.|..|++||..+-.. ..|. .+ ..|-+-.|.|-... ..|. ..+-|
T Consensus 3 GW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~--~~--y~L~~~atrvv~~~~~~~~----~~~~~ 74 (108)
T cd01258 3 GWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPL--YV--YKLYDVATRLVKNSSTRRL----NDQRD 74 (108)
T ss_pred eecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChh--hh--ChhHHhhhheeccCCccCc----CCCCc
Confidence 66642222 22458899999999999999999877421 1331 11 11212223331111 1111 23556
Q ss_pred eeeeeecccCCCCCCc-ceEEEeeCCHHHHHHHHHHHH
Q psy3725 359 CIFRITTSLMDPPGTK-NHTLMLADSDTEKTKWVVALS 395 (760)
Q Consensus 359 ~if~it~s~l~~~~~~-~~l~LlA~S~~ek~kWv~~L~ 395 (760)
..|-|.+.+ + .+-+|=.++..|...|..+|.
T Consensus 75 ~~F~irtg~------~vesh~fsVEt~~dL~~W~raiv 106 (108)
T cd01258 75 NCFLIRTGT------QVENHYLRVETHRDLASWERALV 106 (108)
T ss_pred eEEEEEcCC------ceeeEEEEecCHHHHHHHHHHHh
Confidence 788886443 3 577899999999999999875
No 99
>KOG2048|consensus
Probab=85.36 E-value=92 Score=37.38 Aligned_cols=238 Identities=12% Similarity=0.109 Sum_probs=114.8
Q ss_pred CeeEEEEecCC-CeEEEEE-cC------CCCC-CceEE----cCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCcc
Q psy3725 423 KKIYQMDYIPK-EQLLVVL-AG------KQRY-VQIAR----VGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALD 489 (760)
Q Consensus 423 ~~i~Caa~~~~-~rllvGT-e~------l~~~-~~l~r----v~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~ 489 (760)
..|+|.+..+. +++..++ |+ ...+ .+++. -+....|.-|+|++. .++=.|++..|.+.++..+.
T Consensus 246 adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~ 322 (691)
T KOG2048|consen 246 ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSREFK 322 (691)
T ss_pred cceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc---eEEecceeeEEEEccccccC
Confidence 45777776654 5666554 31 1111 12333 345677999999987 33334577788887775532
Q ss_pred CCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCC----cccceeeeeEecCCc--ceEEEEe
Q psy3725 490 GDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRT----KTRHKRLHEVILPTL--AQCIHIF 563 (760)
Q Consensus 490 ~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~----k~~fkk~kE~~lP~~--~~sl~~~ 563 (760)
..+.. .+....++|..-.. . .-+|.+--+ -..+..|.++.. ...++++.-+.+++. +++-+..
T Consensus 323 ~~~h~-~~~~~p~~~~v~~a----~---~~~L~~~w~---~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiS 391 (691)
T KOG2048|consen 323 NMDHR-QKNLFPASDRVSVA----P---ENRLLVLWK---AHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAIS 391 (691)
T ss_pred chhhh-ccccccccceeecC----c---cceEEEEec---cccccceeccCcccccccChhhheeeecCCccceeeeccC
Confidence 21111 11111122211110 0 002221111 112333444322 112445555666444 5565666
Q ss_pred cCc-eEEEEEcCCeEEEEecCCCCceeecCCCCCcccccccCCCCce-EEEEeCCCeEEEEe-cceEEEEcCCCCccccc
Q psy3725 564 SEG-RLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDAL-LAIELPRGEFLLVF-HSLAAYVDSQGHKSREK 640 (760)
Q Consensus 564 ~~~-~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl-~i~~l~~~EfLLcy-~~~gvfVD~~G~rsR~~ 640 (760)
++| .||+|+-+.+.+|-|+-+. .+..-..+|..+ + ..++. -.|-+.++..+||= |.+.+++=..-.+++..
T Consensus 392 Pdg~~Ia~st~~~~~iy~L~~~~-~vk~~~v~~~~~-~----~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~ke 465 (691)
T KOG2048|consen 392 PDGNLIAISTVSRTKIYRLQPDP-NVKVINVDDVPL-A----LLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKE 465 (691)
T ss_pred CCCCEEEEeeccceEEEEeccCc-ceeEEEeccchh-h----hccceeeEEEecCceEEEEecccceeEEEEecCcchhh
Confidence 554 9999999999999996222 111111112111 1 11222 23344556666665 66666544433344432
Q ss_pred ceecC---CCC-cE-EE--eeCCeEEEEeCC-eeEEEECcCCcEEEEE
Q psy3725 641 EIMYP---ALP-TG-AS--YMDGQLLIFSET-HVDVFNAESGDWLQTV 680 (760)
Q Consensus 641 ~I~W~---~~P-~~-~a--y~~PYLlvf~~~-~IEVr~i~tg~lVQtI 680 (760)
-.... ..| .. ++ =...||.|.+.. .|-|+++++++.--.+
T Consensus 466 l~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 466 LKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLK 513 (691)
T ss_pred hhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecch
Confidence 22211 122 11 22 234499998854 5899999988654443
No 100
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=84.98 E-value=17 Score=34.19 Aligned_cols=103 Identities=17% Similarity=0.276 Sum_probs=56.5
Q ss_pred eeeeeeccccc--ccccceEEEEEEEeCcEEEEEecCCCCC-CCCccceeEEeecCCCCeEEEeeccCcccccCCCccce
Q psy3725 283 YEGYVKVPKTG--GVKKGWVRQFVVVCDFKLFLYDISPDRN-ALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPC 359 (760)
Q Consensus 283 ~eG~vkvp~~~--~~kkgw~r~~~~l~~~kL~~yd~~~~~~-~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~ 359 (760)
++|...|.... ..+++-+|..+-.++.=||---..+.+. ..|...--..|-| .+..+.... .+-||
T Consensus 7 ~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikl--s~l~l~e~v---------~gd~~ 75 (114)
T cd01232 7 LQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQV--SKMGLTEHV---------EGDPC 75 (114)
T ss_pred EEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEecceee--eeeEeEEcc---------CCCCc
Confidence 45554444322 2457788888777775444333322111 1222111122222 222332211 13488
Q ss_pred eeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 360 IFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 360 if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
-|.|.+..... +...+.|-|+|...|+.|+..|.++.
T Consensus 76 kF~i~~~~~~~--~~~~~ilqA~s~e~K~~W~~~I~~il 112 (114)
T cd01232 76 RFALWSGDPPI--SDNRIILKANSQETKQEWVKKIREIL 112 (114)
T ss_pred eEEEEeCCCCC--CceEEEEECCCHHHHHHHHHHHHHHh
Confidence 89997654321 23678999999999999999998764
No 101
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=84.71 E-value=10 Score=34.70 Aligned_cols=97 Identities=11% Similarity=0.211 Sum_probs=66.5
Q ss_pred eeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeee
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFR 362 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~ 362 (760)
..||+.+...+-.+.|=++.|+||.+..|..|.-.+++.. .-+|.| +...|+.|... .++ + |.+|-
T Consensus 3 rkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~------kyilpL--dnLk~Rdve~g-f~s--k---~~~Fe 68 (110)
T cd01256 3 RKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEK------KYMLPL--DGLKLRDIEGG-FMS--R---NHKFA 68 (110)
T ss_pred eeeeEEeeccceecCCCcceEEEEecceeeeecccccccc------cceeec--cccEEEeeccc-ccC--C---CcEEE
Confidence 3699988776656778999999999999999988887764 335555 34677777632 222 2 47777
Q ss_pred eecccCCCCCC--cceEEEeeCCHHHHHHHHHHH
Q psy3725 363 ITTSLMDPPGT--KNHTLMLADSDTEKTKWVVAL 394 (760)
Q Consensus 363 it~s~l~~~~~--~~~l~LlA~S~~ek~kWv~~L 394 (760)
+ ++.-..-.. -.+|-|-|+|..+-.-|...+
T Consensus 69 L-fnpd~rnvykd~k~lel~~~~~e~vdswkasf 101 (110)
T cd01256 69 L-FYPDGRNVYKDYKQLELGCETLEEVDSWKASF 101 (110)
T ss_pred E-EcCcccccccchheeeecCCCHHHHHHHHHHH
Confidence 7 322111111 136889999999999998864
No 102
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=84.61 E-value=34 Score=34.64 Aligned_cols=164 Identities=15% Similarity=0.168 Sum_probs=86.2
Q ss_pred ceEEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEcCC-eEEEEecCCCCce-eecCCCCCcccccccCCCC
Q psy3725 530 SSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSG-FSIYKFSQDNRPI-PLIHQDNPLVSLLTYSPVD 607 (760)
Q Consensus 530 ~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~g-F~ivdl~~~~~~~-~Ll~~~d~sl~f~~~~~~~ 607 (760)
.-.|++|....++ ...++.++.++.......++.|+|++..+ +..+|+. ++... .......+... ..
T Consensus 45 ~~~l~~~d~~tG~----~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~-tG~~~W~~~~~~~~~~~------~~ 113 (238)
T PF13360_consen 45 DGNLYALDAKTGK----VLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAK-TGKVLWSIYLTSSPPAG------VR 113 (238)
T ss_dssp TSEEEEEETTTSE----EEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETT-TSCEEEEEEE-SSCTCS------TB
T ss_pred CCEEEEEECCCCC----EEEEeeccccccceeeecccccccccceeeeEecccC-Ccceeeeeccccccccc------cc
Confidence 3478888864443 34556666664443344455999999765 5555644 55443 21111101111 01
Q ss_pred ceEEEEeCCCeEEEEe-cceEEEEc-CCCCcccccceecCCCC------------cEEEeeCCeEEEEeCCe--eEEEEC
Q psy3725 608 ALLAIELPRGEFLLVF-HSLAAYVD-SQGHKSREKEIMYPALP------------TGASYMDGQLLIFSETH--VDVFNA 671 (760)
Q Consensus 608 pl~i~~l~~~EfLLcy-~~~gvfVD-~~G~rsR~~~I~W~~~P------------~~~ay~~PYLlvf~~~~--IEVr~i 671 (760)
......+.++.+.++. +..-+.+| ..|+..-...+ ...+ ....+...+|++...+. +.+ ++
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~ 190 (238)
T PF13360_consen 114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV--GEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DL 190 (238)
T ss_dssp --SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES--STT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ET
T ss_pred cccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec--CCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-EC
Confidence 1111222245555555 44445577 46765433222 2111 23445556899998777 788 99
Q ss_pred cCCcEEEEEecCCce--ecCCCCCEEEEecCCccEEEEe
Q psy3725 672 ESGDWLQTVNIRRAL--PLDTRGSLCFSLANDIPYVVYL 708 (760)
Q Consensus 672 ~tg~lVQtI~~~~ir--~L~s~G~l~l~s~~~~~~~~~~ 708 (760)
.+|+.+-..+...+. +...++.||+.+ .+-.+.++.
T Consensus 191 ~tg~~~w~~~~~~~~~~~~~~~~~l~~~~-~~~~l~~~d 228 (238)
T PF13360_consen 191 ATGEKLWSKPISGIYSLPSVDGGTLYVTS-SDGRLYALD 228 (238)
T ss_dssp TTTEEEEEECSS-ECECEECCCTEEEEEE-TTTEEEEEE
T ss_pred CCCCEEEEecCCCccCCceeeCCEEEEEe-CCCEEEEEE
Confidence 999833233333333 677888898887 434444443
No 103
>KOG0289|consensus
Probab=84.44 E-value=29 Score=39.54 Aligned_cols=133 Identities=14% Similarity=0.193 Sum_probs=81.5
Q ss_pred eeEEEEecCCCeEEEEEc---C------CCCCCceEEcC-CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCc
Q psy3725 424 KIYQMDYIPKEQLLVVLA---G------KQRYVQIARVG-DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEV 493 (760)
Q Consensus 424 ~i~Caa~~~~~rllvGTe---~------l~~~~~l~rv~-~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~ 493 (760)
.+.|++ +..|-+++||- + +.......++. +..+|.-|..-+.-=-|++=++ +..|.+++|+.+.. .
T Consensus 349 ~~ts~~-fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad-d~~V~lwDLRKl~n--~ 424 (506)
T KOG0289|consen 349 EYTSAA-FHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD-DGSVKLWDLRKLKN--F 424 (506)
T ss_pred eeEEee-EcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec-CCeEEEEEehhhcc--c
Confidence 467776 67777777764 2 33333455554 4578999998865555666666 56799999988763 2
Q ss_pred ceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCC-cceEEEEecCceEEE
Q psy3725 494 EWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPT-LAQCIHIFSEGRLCV 570 (760)
Q Consensus 494 ~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~-~~~sl~~~~~~~LcV 570 (760)
..+.+++.++...+..+. .|. +|.++ .++++|+.|. ..+..+..++++..-. .+.++.|-...++|+
T Consensus 425 kt~~l~~~~~v~s~~fD~--SGt---~L~~~---g~~l~Vy~~~--k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~ 492 (506)
T KOG0289|consen 425 KTIQLDEKKEVNSLSFDQ--SGT---YLGIA---GSDLQVYICK--KKTKSWTEIKELADHSGLSTGVRFGEHAQYLA 492 (506)
T ss_pred ceeeccccccceeEEEcC--CCC---eEEee---cceeEEEEEe--cccccceeeehhhhcccccceeeecccceEEe
Confidence 236666766666555432 233 78877 3456666665 3333467888888766 444444443335554
No 104
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.60 E-value=2.2 Score=40.67 Aligned_cols=39 Identities=26% Similarity=0.514 Sum_probs=30.0
Q ss_pred ccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHH
Q psy3725 356 DIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALS 395 (760)
Q Consensus 356 dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~ 395 (760)
..|..|.|+..+ ..-|...+++|-|+|+.||++|++||.
T Consensus 81 ~~~~~F~ltLl~-N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 81 GRPNLFLLTLLR-NADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CCCceEEEEeec-cCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 578999997432 122445689999999999999999974
No 105
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=83.40 E-value=11 Score=45.83 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=24.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3725 71 LEKMELLNLQSSLNSEIQAKTQISEELSKTRSELI 105 (760)
Q Consensus 71 ~~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~ 105 (760)
.||..+-.|+..|..|.++|+.+..+|+..|.+-.
T Consensus 485 ~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~ 519 (697)
T PF09726_consen 485 QDKQSLQQLEKRLAEERRQRASLEKQLQEERKARK 519 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666677777778888888888877776665433
No 106
>KOG0292|consensus
Probab=83.14 E-value=1.3e+02 Score=37.44 Aligned_cols=65 Identities=11% Similarity=0.217 Sum_probs=45.6
Q ss_pred cceEEEEcCCCCcccccceecCCCCcEEEeeCC-eEEEEeCCeeEEEECcCCcEEEEEecCCceecCC
Q psy3725 624 HSLAAYVDSQGHKSREKEIMYPALPTGASYMDG-QLLIFSETHVDVFNAESGDWLQTVNIRRALPLDT 690 (760)
Q Consensus 624 ~~~gvfVD~~G~rsR~~~I~W~~~P~~~ay~~P-YLlvf~~~~IEVr~i~tg~lVQtI~~~~ir~L~s 690 (760)
++.+++-|...+.+|. |.-+..-..+-|..+ .+++.++++|.+++++....+-.|+.+++|-...
T Consensus 432 ~~~v~ik~l~N~vtkk--l~~~~~~~~IF~ag~g~lll~~~~~v~lfdvQq~~~~~si~~s~vkyvvw 497 (1202)
T KOG0292|consen 432 NEQVVIKNLKNKVTKK--LLLPESTDDIFYAGTGNLLLRSPDSVTLFDVQQKKKVGSIKVSKVKYVVW 497 (1202)
T ss_pred CcceEEecccchhhhc--ccCcccccceeeccCccEEEEcCCeEEEEEeecceEEEEEecCceeEEEE
Confidence 3344444445555554 333323334666655 9999999999999999999999999999887653
No 107
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=82.70 E-value=8.4 Score=39.93 Aligned_cols=69 Identities=16% Similarity=0.258 Sum_probs=57.3
Q ss_pred HHHH-HhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 72 EKME-LLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 72 ~~~~-~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
|+.+ +.++.--||.++.-|..+-+||....+.+.+.+-+|+..+..+.-|.++..++.-+...|+.|++
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 4433 45677779999999999999999999999999999999999999888888888777777776665
No 108
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=82.52 E-value=1e+02 Score=35.57 Aligned_cols=237 Identities=13% Similarity=0.181 Sum_probs=116.7
Q ss_pred CCeeEEEEec-----CCCeEEEEECCCCeEEEEECCCccCC-----C--cce---eecCcccceEEEEeeeeCCCccceE
Q psy3725 456 KKIYQMDYIP-----EEQLLVVLAGKQRYVRLVPVRALDGD-----E--VEW---VKIPETKGCLSFTTGPLTHTRTQHC 520 (760)
Q Consensus 456 k~V~QI~Vi~-----e~~lLlvLsgk~r~L~l~~L~~L~~~-----~--~~~---~kl~etKgc~~f~~g~~~~~~~~~~ 520 (760)
-+|-||++=. +.+.|+||.- +.|.+|.+...++. . +.. +.+ .+.+.-|+.|...+.....+
T Consensus 72 ~PILqv~~G~F~s~~~~~~LaVLhP--~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l--~~~a~nm~~G~Fgg~~~~~~ 147 (418)
T PF14727_consen 72 DPILQVECGKFVSGSEDLQLAVLHP--RKLSVYSVSLVDGTVEHGNQYQLELIYEHSL--QRTAYNMCCGPFGGVKGRDF 147 (418)
T ss_pred CcEEEEEeccccCCCCcceEEEecC--CEEEEEEEEecCCCcccCcEEEEEEEEEEec--ccceeEEEEEECCCCCCceE
Confidence 4789998753 4467888886 68888888655553 1 111 333 24455577787765332347
Q ss_pred EEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCc-eEEEEEcCCeEEEEecCCCCceeecCCCCCcc-
Q psy3725 521 LALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG-RLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLV- 598 (760)
Q Consensus 521 LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~-~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl- 598 (760)
+||=-= .=++.+|+-+.--+. +.+..|.+|+| |.|...- .+.+.. +.+.+.... -..|....+..-
T Consensus 148 IcVQS~---DG~L~~feqe~~~f~-~~lp~~llPgP---l~Y~~~tDsfvt~s-ss~~l~~Yk----y~~La~~s~~~~~ 215 (418)
T PF14727_consen 148 ICVQSM---DGSLSFFEQESFAFS-RFLPDFLLPGP---LCYCPRTDSFVTAS-SSWTLECYK----YQDLASASEASSR 215 (418)
T ss_pred EEEEec---CceEEEEeCCcEEEE-EEcCCCCCCcC---eEEeecCCEEEEec-CceeEEEec----HHHhhhccccccc
Confidence 776321 125666664332222 34566899999 6676532 444444 344444331 111111100000
Q ss_pred -----ccc-ccCCCCc------------eEEEEeC-CCeEEEEecceEEE-EcCCCCcccccceecCCCCcEEE-ee---
Q psy3725 599 -----SLL-TYSPVDA------------LLAIELP-RGEFLLVFHSLAAY-VDSQGHKSREKEIMYPALPTGAS-YM--- 654 (760)
Q Consensus 599 -----~f~-~~~~~~p------------l~i~~l~-~~EfLLcy~~~gvf-VD~~G~rsR~~~I~W~~~P~~~a-y~--- 654 (760)
.-. ..+...| +.+++.+ ..-..++--+..+| ++.+|... ...+.+..|.++. |.
T Consensus 216 ~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~G~l~--~~krLd~~p~~~~~Y~~~~ 293 (418)
T PF14727_consen 216 QSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKDNGSLR--FQKRLDYNPSCFCPYRVPW 293 (418)
T ss_pred cccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcCCCeEE--EEEecCCceeeEEEEEeec
Confidence 000 1112222 2344432 11222333333333 56688433 2355577887765 33
Q ss_pred --CC-----eEEEEeCCeeEEEECcCCcEEEEEec-----CCceecCCCCCEEEEecCCccEEEEeec
Q psy3725 655 --DG-----QLLIFSETHVDVFNAESGDWLQTVNI-----RRALPLDTRGSLCFSLANDIPYVVYLAN 710 (760)
Q Consensus 655 --~P-----YLlvf~~~~IEVr~i~tg~lVQtI~~-----~~ir~L~s~G~l~l~s~~~~~~~~~~~~ 710 (760)
.| +|++-+++.+-|+.=.+-.|--.++. .-..+-..+|.|...+.+-.=-+.|+|-
T Consensus 294 ~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 294 YNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred ccCCCCceEEEEEecCCeEEEEeCCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 33 56666677777776655444333211 1111222366666665443444666665
No 109
>KOG1274|consensus
Probab=82.44 E-value=27 Score=42.93 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=62.8
Q ss_pred CCeeEEEEe-cCCCeEEEEEc-------CC-CCCCceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC
Q psy3725 422 TKKIYQMDY-IPKEQLLVVLA-------GK-QRYVQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE 492 (760)
Q Consensus 422 ~~~i~Caa~-~~~~rllvGTe-------~l-~~~~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~ 492 (760)
...+.|.++ -++..++.|.+ ++ +.....+-.+...+|.||.+-|+-++|++.+. +..|+++++..-.-..
T Consensus 96 tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-dG~v~iw~~~~~~~~~ 174 (933)
T KOG1274|consen 96 TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-DGKVQIWDLQDGILSK 174 (933)
T ss_pred eccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec-CceEEEEEcccchhhh
Confidence 334555553 34557999988 12 22212222345578999999999999999987 5799999996422110
Q ss_pred ----cce-eecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEe
Q psy3725 493 ----VEW-VKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEI 538 (760)
Q Consensus 493 ----~~~-~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~ 538 (760)
+.+ .-...++-|...+.... +|. +++++++. .|.+|..
T Consensus 175 tl~~v~k~n~~~~s~i~~~~aW~Pk-~g~---la~~~~d~----~Vkvy~r 217 (933)
T KOG1274|consen 175 TLTGVDKDNEFILSRICTRLAWHPK-GGT---LAVPPVDN----TVKVYSR 217 (933)
T ss_pred hcccCCccccccccceeeeeeecCC-CCe---EEeeccCC----eEEEEcc
Confidence 000 11111344554444222 233 77777766 6666663
No 110
>KOG2445|consensus
Probab=82.42 E-value=20 Score=39.16 Aligned_cols=127 Identities=14% Similarity=0.241 Sum_probs=76.9
Q ss_pred CCCCeeEEEEecCC-CeEEEEECCCCeEEEEECCCccCCCcc-e------eecCcccc-e--EEEEeeeeCCCccceEEE
Q psy3725 454 DTKKIYQMDYIPEE-QLLVVLAGKQRYVRLVPVRALDGDEVE-W------VKIPETKG-C--LSFTTGPLTHTRTQHCLA 522 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~-~lLlvLsgk~r~L~l~~L~~L~~~~~~-~------~kl~etKg-c--~~f~~g~~~~~~~~~~Lc 522 (760)
....|+.|..-|.+ ++.+.-++-+..||+|+. ++..++. | .-+..+-| + ..|++.-+..+-...+++
T Consensus 111 srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA--~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iA 188 (361)
T KOG2445|consen 111 SRSSVTDVKFAPKHLGLKLAAASADGILRIYEA--PDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIA 188 (361)
T ss_pred CCcceeEEEecchhcceEEEEeccCcEEEEEec--CCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEE
Confidence 45679999988876 677777777789999986 3332211 1 11111111 1 123333332221123566
Q ss_pred EEEec--CCceEEEEEEecCCcccceeeeeE-ecCCcceEEEEecC-----ceEEEEEcCCeEEEEec
Q psy3725 523 LAVKR--QNSSQIILYEITRTKTRHKRLHEV-ILPTLAQCIHIFSE-----GRLCVGYQSGFSIYKFS 582 (760)
Q Consensus 523 VAvKr--~~~~~Vl~ye~~~~k~~fkk~kE~-~lP~~~~sl~~~~~-----~~LcVG~~~gF~ivdl~ 582 (760)
|+.-- ++.-++++|+.+.+...+.+.-|+ ..+++++.|+|.++ ..|.|+++.|-.|+.+.
T Consensus 189 vgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~ 256 (361)
T KOG2445|consen 189 VGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVK 256 (361)
T ss_pred EEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEe
Confidence 66532 123367777765544234555565 56899999999874 28999999999999996
No 111
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=82.39 E-value=46 Score=32.38 Aligned_cols=113 Identities=18% Similarity=0.175 Sum_probs=57.6
Q ss_pred hhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhhHHHH
Q psy3725 4 LASKAGQEFRVSDEKDARSYLQALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQSSL 83 (760)
Q Consensus 4 ~~~~~~i~qwv~dek~ar~ylq~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~lqsal 83 (760)
+.-|-++|+--..+...|.-|..--.++..|++.|.+. ..|...--...--++.++.
T Consensus 37 in~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~-----------------------~~rL~~~~~~~ere~~~~~ 93 (151)
T PF11559_consen 37 INCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQND-----------------------VERLKEQLEELERELASAE 93 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666667777777764 2333322223333344444
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhh
Q psy3725 84 NSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRL 139 (760)
Q Consensus 84 ~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~ 139 (760)
..+.+++..+..+..+.+..--..+.-.......-.....|+.+++.|++.|+.++
T Consensus 94 ~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 94 EKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444433333332222222233334445566677777777666554
No 112
>KOG0310|consensus
Probab=82.13 E-value=30 Score=39.73 Aligned_cols=143 Identities=14% Similarity=0.224 Sum_probs=90.7
Q ss_pred CCeeEEEEecCCCe--EEEEEc-CC------CCC-CceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCC
Q psy3725 422 TKKIYQMDYIPKEQ--LLVVLA-GK------QRY-VQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGD 491 (760)
Q Consensus 422 ~~~i~Caa~~~~~r--llvGTe-~l------~~~-~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~ 491 (760)
..-|-|++....+. ++=|.- |. ... ..+.-+...-+|..+-.++..++++.-.| +.+++.++. .+.
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG--n~vkVWDl~--~G~ 228 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG--NSVKVWDLT--TGG 228 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC--CeEEEEEec--CCc
Confidence 55677888655544 444433 31 111 24455667789999999998887766555 899999983 121
Q ss_pred CcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCc-eEEE
Q psy3725 492 EVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG-RLCV 570 (760)
Q Consensus 492 ~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~-~LcV 570 (760)
..-.....-.|-++..+++... +.+|-++.-+ .|.+|..+. |+...-+..|+++-+|+++.++ .+.+
T Consensus 229 qll~~~~~H~KtVTcL~l~s~~----~rLlS~sLD~----~VKVfd~t~----~Kvv~s~~~~~pvLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 229 QLLTSMFNHNKTVTCLRLASDS----TRLLSGSLDR----HVKVFDTTN----YKVVHSWKYPGPVLSIAVSPDDQTVVI 296 (487)
T ss_pred eehhhhhcccceEEEEEeecCC----ceEeeccccc----ceEEEEccc----eEEEEeeecccceeeEEecCCCceEEE
Confidence 1101111123444444433321 2256666766 788888543 6778889999999999999853 8999
Q ss_pred EEcCCeEEEE
Q psy3725 571 GYQSGFSIYK 580 (760)
Q Consensus 571 G~~~gF~ivd 580 (760)
|..+|-..+-
T Consensus 297 GmsnGlv~~r 306 (487)
T KOG0310|consen 297 GMSNGLVSIR 306 (487)
T ss_pred ecccceeeee
Confidence 9999866654
No 113
>KOG0266|consensus
Probab=81.97 E-value=1.1e+02 Score=35.47 Aligned_cols=163 Identities=15% Similarity=0.185 Sum_probs=97.4
Q ss_pred EEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCc-eEEEEEcC-CeEEEEecCCCCceeecCCCCCc
Q psy3725 520 CLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG-RLCVGYQS-GFSIYKFSQDNRPIPLIHQDNPL 597 (760)
Q Consensus 520 ~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~-~LcVG~~~-gF~ivdl~~~~~~~~Ll~~~d~s 597 (760)
.+..+..+ +|.+|.+..+....+.++ ..+..+.++.|...+ .|+-|... .-.+.|+. +++...-+..
T Consensus 218 l~s~s~D~----tiriwd~~~~~~~~~~l~--gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~-~~~~~~~l~~---- 286 (456)
T KOG0266|consen 218 LLSGSDDK----TLRIWDLKDDGRNLKTLK--GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR-TGECVRKLKG---- 286 (456)
T ss_pred EEEecCCc----eEEEeeccCCCeEEEEec--CCCCceEEEEecCCCCEEEEecCCCcEEEEecc-CCeEEEeeec----
Confidence 45555555 899999732222222222 667888999999876 55555543 36677886 3444433331
Q ss_pred ccccccCCCCceEEEEeC-CCeEEE--EecceEEEEcCCCCccc-ccceecCCCC--c-EEEeeCC--eEEEEeCC-eeE
Q psy3725 598 VSLLTYSPVDALLAIELP-RGEFLL--VFHSLAAYVDSQGHKSR-EKEIMYPALP--T-GASYMDG--QLLIFSET-HVD 667 (760)
Q Consensus 598 l~f~~~~~~~pl~i~~l~-~~EfLL--cy~~~gvfVD~~G~rsR-~~~I~W~~~P--~-~~ay~~P--YLlvf~~~-~IE 667 (760)
..+++..+..+ ++.+|+ +||.+-.+-|..+..-+ ...+.+...| . .+.|... ||++.+++ .+-
T Consensus 287 -------hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 287 -------HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred -------cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 23444333332 344443 56777777777666533 2356666666 4 4445433 88888877 899
Q ss_pred EEECcCCcEEEEEecCCc------eecC-CCCCEEEEecC
Q psy3725 668 VFNAESGDWLQTVNIRRA------LPLD-TRGSLCFSLAN 700 (760)
Q Consensus 668 Vr~i~tg~lVQtI~~~~i------r~L~-s~G~l~l~s~~ 700 (760)
++++.++..+++..+... ++.. ..|..++.+.+
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~ 399 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE 399 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeC
Confidence 999999999998754443 2332 35555555554
No 114
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.86 E-value=29 Score=32.92 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 83 LNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 83 l~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+.+||=.--.--|++.........++.++++.+.|+..++.=+--+.++.+||+
T Consensus 49 l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~ 102 (120)
T PF12325_consen 49 LREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELR 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 334443333333444444445555566677777777666665555666666665
No 115
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=81.68 E-value=24 Score=32.99 Aligned_cols=60 Identities=17% Similarity=0.299 Sum_probs=36.9
Q ss_pred eEEeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHH
Q psy3725 329 SLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSE 396 (760)
Q Consensus 329 ~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~ 396 (760)
--.|+|+. +.|..+...+-. ....-+-..|+|.... + ...+.++|-|..+|++|+++|..
T Consensus 46 Kgri~l~~--~~I~d~~Dg~~~-~~~~~~knafkl~~~~-~----~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 46 KGRIDLDR--CEVVNIRDGKMF-SSGHTIKNSLKIYSES-T----DEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EEEEEccc--EEEEECCCCccc-cCCceeEEEEEEEEcC-C----CeEEEEEECCHHHHHHHHHHHHH
Confidence 33455522 445444433222 1123467889995332 1 24589999999999999999864
No 116
>PF15406 PH_6: Pleckstrin homology domain
Probab=81.44 E-value=3.2 Score=38.51 Aligned_cols=72 Identities=19% Similarity=0.349 Sum_probs=47.3
Q ss_pred EEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCCCcceEEE
Q psy3725 300 VRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLM 379 (760)
Q Consensus 300 ~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~~~~~l~L 379 (760)
.-.|+.=.|..|++|-..+++.. | .-+|.|-| ++.+. ...+-.+.|++. +..-++
T Consensus 40 ~~AwAsqTGKGLLF~~K~~dka~-P----~GiinLad----ase~~-------~~g~~kF~f~~~---------G~khtF 94 (112)
T PF15406_consen 40 TAAWASQTGKGLLFFSKAEDKAS-P----SGIINLAD----ASEPE-------KDGSNKFHFKIK---------GHKHTF 94 (112)
T ss_pred hhhhhhccCceEEEEeccccccC-C----cceEehhh----ccccc-------cCCCceEEEEeC---------Cceeee
Confidence 34667778889999988666653 3 34666633 12211 112334666662 345789
Q ss_pred eeCCHHHHHHHHHHHHH
Q psy3725 380 LADSDTEKTKWVVALSE 396 (760)
Q Consensus 380 lA~S~~ek~kWv~~L~~ 396 (760)
=|.|..||..||.+|+.
T Consensus 95 ~A~s~aERD~Wv~~lk~ 111 (112)
T PF15406_consen 95 EAASAAERDNWVAQLKA 111 (112)
T ss_pred ecCCHHHhccHHHHhhc
Confidence 99999999999999863
No 117
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=80.96 E-value=8.7 Score=46.36 Aligned_cols=106 Identities=16% Similarity=0.230 Sum_probs=70.7
Q ss_pred cceeeeeeccccccc-ccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccce
Q psy3725 281 TAYEGYVKVPKTGGV-KKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPC 359 (760)
Q Consensus 281 t~~eG~vkvp~~~~~-kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~ 359 (760)
..|||||=-...... ..-...+|+||++..|..|-..+..+..| .-+.+| |+...|....-. .+|- -+=+
T Consensus 4 ~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~~~p--irs~~i---d~~~rVed~Gr~-~~~g---~~~y 74 (719)
T PLN00188 4 VVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDNQVP--IKTLLI---DGNCRVEDRGLK-THHG---HMVY 74 (719)
T ss_pred ceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCcccccc--ceeecc---CCCceEeecCce-EEcC---ceEE
Confidence 469999843333332 34568999999999999998766555444 234445 445566554431 2222 2337
Q ss_pred eeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 360 IFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 360 if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
+|+| .+.+.. ...+.|=|-|.+|-.+|+++++++..
T Consensus 75 vl~~-Yn~~~~---~~~~~~~a~~~eea~~W~~a~~~a~~ 110 (719)
T PLN00188 75 VLSV-YNKKEK---YHRITMAAFNIQEALIWKEKIESVID 110 (719)
T ss_pred EEEE-ecCCCc---cccEEEecCCHHHHHHHHHHHHHHHh
Confidence 7777 344432 34689999999999999999999877
No 118
>KOG0279|consensus
Probab=80.68 E-value=90 Score=33.88 Aligned_cols=146 Identities=13% Similarity=0.197 Sum_probs=96.2
Q ss_pred CCeeEEEEecCCCe-EEEEEcC-------CCCCCceEEcCC--CCCeeEEEEecCC-CeEEEEECCCCeEEEEECCCccC
Q psy3725 422 TKKIYQMDYIPKEQ-LLVVLAG-------KQRYVQIARVGD--TKKIYQMDYIPEE-QLLVVLAGKQRYVRLVPVRALDG 490 (760)
Q Consensus 422 ~~~i~Caa~~~~~r-llvGTe~-------l~~~~~l~rv~~--~k~V~QI~Vi~e~-~lLlvLsgk~r~L~l~~L~~L~~ 490 (760)
.+.|+|.++-.+++ |+=|..+ ...+-..+.-.+ .-=|.++...|.+ +..|+=++-++.|.+.+|+.+.-
T Consensus 105 ~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 105 TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred CCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence 66788887533444 7777661 111112222222 3349999999998 77777777889999999976643
Q ss_pred CCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecC-ceEE
Q psy3725 491 DEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSE-GRLC 569 (760)
Q Consensus 491 ~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~-~~Lc 569 (760)
...-+.+++.....++.. .|. ||+.-.| .-+++.|.++.++. +.-+..-+++.+|+|.++ .-||
T Consensus 185 ---~~~~~gh~~~v~t~~vSp--DGs----lcasGgk--dg~~~LwdL~~~k~----lysl~a~~~v~sl~fspnrywL~ 249 (315)
T KOG0279|consen 185 ---RTTFIGHSGYVNTVTVSP--DGS----LCASGGK--DGEAMLWDLNEGKN----LYSLEAFDIVNSLCFSPNRYWLC 249 (315)
T ss_pred ---hhccccccccEEEEEECC--CCC----EEecCCC--CceEEEEEccCCce----eEeccCCCeEeeEEecCCceeEe
Confidence 223334455555554422 233 7776555 44788899887653 344666778889999976 3799
Q ss_pred EEEcCCeEEEEec
Q psy3725 570 VGYQSGFSIYKFS 582 (760)
Q Consensus 570 VG~~~gF~ivdl~ 582 (760)
.++..+-.|.|++
T Consensus 250 ~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 250 AATATSIKIWDLE 262 (315)
T ss_pred eccCCceEEEecc
Confidence 9999999999997
No 119
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=80.43 E-value=68 Score=37.95 Aligned_cols=61 Identities=16% Similarity=0.284 Sum_probs=40.7
Q ss_pred HHhhhHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 75 ELLNLQSSLNSEIQAKTQISEELSKTRSELI----AAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 75 ~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~----~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
++..+...|+.|-..+|.++-||++-+..+. .+-++|+|.++..+-++.|-|.|..|..||
T Consensus 379 el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL 443 (546)
T PF07888_consen 379 ELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQEL 443 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556788899999999999999888885 233556666665555555555555554443
No 120
>KOG0971|consensus
Probab=79.78 E-value=16 Score=44.92 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 107 AQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 107 ~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
++.+|..++.|++||.-++|-||.|+++
T Consensus 330 LQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 330 LQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666677777777777777777776
No 121
>KOG0972|consensus
Probab=79.66 E-value=13 Score=40.10 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhhHHHHHHHHHHHHhhHHHHH
Q psy3725 19 DARSYLQALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQSSLNSEIQAKTQISEELS 98 (760)
Q Consensus 19 ~ar~ylq~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~lqsal~~Ei~akq~i~eeL~ 98 (760)
.+.+||..|-..+|--||-+-+. ---|-+.|.+=||-=...+++|+
T Consensus 245 ~~~~~Ldklh~eit~~LEkI~SR----------------------------------EK~lNnqL~~l~q~fr~a~~~ls 290 (384)
T KOG0972|consen 245 NVGPYLDKLHKEITKALEKIASR----------------------------------EKSLNNQLASLMQKFRRATDTLS 290 (384)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777665432 01234455555666666788888
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 99 KTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 99 k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
.+|.++-++.--+.+--.-+.+...|+|.++.|+|+
T Consensus 291 e~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 291 ELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777777777788899999999999987
No 122
>KOG1407|consensus
Probab=79.56 E-value=82 Score=33.94 Aligned_cols=203 Identities=19% Similarity=0.206 Sum_probs=102.0
Q ss_pred cCCCCCeeEEEEecCCC-eEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCc
Q psy3725 452 VGDTKKIYQMDYIPEEQ-LLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNS 530 (760)
Q Consensus 452 v~~~k~V~QI~Vi~e~~-lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~ 530 (760)
-++...|.|+..-|... +++.-+| ++.+++.++.. ...+..-+++|=.++.+=-.. +. +++|.-|. +.
T Consensus 61 ~gh~~svdql~w~~~~~d~~atas~-dk~ir~wd~r~-----~k~~~~i~~~~eni~i~wsp~-g~---~~~~~~kd-D~ 129 (313)
T KOG1407|consen 61 RGHTDSVDQLCWDPKHPDLFATASG-DKTIRIWDIRS-----GKCTARIETKGENINITWSPD-GE---YIAVGNKD-DR 129 (313)
T ss_pred cCCCcchhhheeCCCCCcceEEecC-CceEEEEEecc-----CcEEEEeeccCcceEEEEcCC-CC---EEEEecCc-cc
Confidence 34556799999988884 5555555 78999998732 223222334444444332222 22 45544432 32
Q ss_pred eEEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEcC-C-eEEEEecCCCCce-eecCCCCCcccccccCCCC
Q psy3725 531 SQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQS-G-FSIYKFSQDNRPI-PLIHQDNPLVSLLTYSPVD 607 (760)
Q Consensus 531 ~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~-g-F~ivdl~~~~~~~-~Ll~~~d~sl~f~~~~~~~ 607 (760)
++.+ .. + .++...+...+.++.-+.|-.++-+.+-++. | -+|++-. ..++. ++- ..| ++
T Consensus 130 it~i--d~-r---~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp-sLkpv~si~--AH~---------sn 191 (313)
T KOG1407|consen 130 ITFI--DA-R---TYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP-SLKPVQSIK--AHP---------SN 191 (313)
T ss_pred EEEE--Ee-c---ccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecc-ccccccccc--cCC---------cc
Confidence 2222 21 1 1445566666677666777665555555442 1 2222221 11111 110 000 00
Q ss_pred ceEEEEeCCCeEEEEecceEE--EEcCCCC-ccccc-ceecCCCCcEEEeeCCeEEEEeCC-eeEEEECcCCcEEEEEec
Q psy3725 608 ALLAIELPRGEFLLVFHSLAA--YVDSQGH-KSREK-EIMYPALPTGASYMDGQLLIFSET-HVDVFNAESGDWLQTVNI 682 (760)
Q Consensus 608 pl~i~~l~~~EfLLcy~~~gv--fVD~~G~-rsR~~-~I~W~~~P~~~ay~~PYLlvf~~~-~IEVr~i~tg~lVQtI~~ 682 (760)
=+||---+.+.|+-.=..-+. .=|.+-- -.|.. .+.|+-.-.+|.|..-||-.-+++ +|+|-+++||.-+..|+-
T Consensus 192 CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 192 CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC 271 (313)
T ss_pred eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec
Confidence 011110012222211110000 0011000 01222 489999999999999998877755 799999999999998864
Q ss_pred C
Q psy3725 683 R 683 (760)
Q Consensus 683 ~ 683 (760)
.
T Consensus 272 ~ 272 (313)
T KOG1407|consen 272 E 272 (313)
T ss_pred c
Confidence 4
No 123
>KOG0650|consensus
Probab=79.41 E-value=20 Score=42.23 Aligned_cols=176 Identities=11% Similarity=0.208 Sum_probs=103.0
Q ss_pred EEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEE---EEcCCeEEEEec-CC----CCceeecCC----CCCccc
Q psy3725 532 QIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCV---GYQSGFSIYKFS-QD----NRPIPLIHQ----DNPLVS 599 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcV---G~~~gF~ivdl~-~~----~~~~~Ll~~----~d~sl~ 599 (760)
+|.+|++.. ++.++-+++.+.+.||+|...+.+|| +....+.+++-. |+ +...+++.. +.+..+
T Consensus 423 tvriWEi~T----gRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~ 498 (733)
T KOG0650|consen 423 TVRIWEIAT----GRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAA 498 (733)
T ss_pred cEEEEEeec----ceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCccc
Confidence 578899853 57788899999999999998766655 444444455442 31 122333321 111111
Q ss_pred ccccC------CCCceEE-E-------Ee---CCCeEEEEec----ceEEEEcCCCCcccccce-ecCCCCcEEEee--C
Q psy3725 600 LLTYS------PVDALLA-I-------EL---PRGEFLLVFH----SLAAYVDSQGHKSREKEI-MYPALPTGASYM--D 655 (760)
Q Consensus 600 f~~~~------~~~pl~i-~-------~l---~~~EfLLcy~----~~gvfVD~~G~rsR~~~I-~W~~~P~~~ay~--~ 655 (760)
.+.-. ...-+++ + ++ .++.||-.-- +.+|+|-.--++.....+ +=-+.|+.+.|+ .
T Consensus 499 ~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~ 578 (733)
T KOG0650|consen 499 VVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK 578 (733)
T ss_pred ceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC
Confidence 11100 0000111 1 11 4677875443 366666554444444455 445889999996 5
Q ss_pred CeEEEEeCCeeEEEECcCCcEEEEE-ecCC-cee--cCCCCCEEEEecCCccEEEEeecc
Q psy3725 656 GQLLIFSETHVDVFNAESGDWLQTV-NIRR-ALP--LDTRGSLCFSLANDIPYVVYLANI 711 (760)
Q Consensus 656 PYLlvf~~~~IEVr~i~tg~lVQtI-~~~~-ir~--L~s~G~l~l~s~~~~~~~~~~~~~ 711 (760)
||+||.+.+.|-|+++..++||-.+ ++.+ |-. ++.+|.-.+++..+-+++.|.=.+
T Consensus 579 p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldl 638 (733)
T KOG0650|consen 579 PYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDL 638 (733)
T ss_pred ceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEccc
Confidence 8999999999999999888777764 3333 222 345666655666556666664443
No 124
>KOG0299|consensus
Probab=79.24 E-value=1.3e+02 Score=34.72 Aligned_cols=206 Identities=14% Similarity=0.194 Sum_probs=110.7
Q ss_pred CCeeEEEEecCCCe-EEEEEc--CC--C-CC-CceEEc--CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC
Q psy3725 422 TKKIYQMDYIPKEQ-LLVVLA--GK--Q-RY-VQIARV--GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE 492 (760)
Q Consensus 422 ~~~i~Caa~~~~~r-llvGTe--~l--~-~~-~~l~rv--~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~ 492 (760)
.+.+.|.++-.+++ |+.|-- ++ . -. ...+++ +....|.-+..-..-+=|.+.+- +|.|.++.++.+.--+
T Consensus 202 ~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~-Drsvkvw~~~~~s~ve 280 (479)
T KOG0299|consen 202 VKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA-DRSVKVWSIDQLSYVE 280 (479)
T ss_pred cceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec-CCceEEEehhHhHHHH
Confidence 34566776544444 666543 11 0 01 122333 34567888887777666666653 6899999997764321
Q ss_pred cceeecCcccceE--EEEeeeeCCCccceEEEEE-EecCCceEEEEEEecCCcccceeeeeEecC--CcceEEEEecCce
Q psy3725 493 VEWVKIPETKGCL--SFTTGPLTHTRTQHCLALA-VKRQNSSQIILYEITRTKTRHKRLHEVILP--TLAQCIHIFSEGR 567 (760)
Q Consensus 493 ~~~~kl~etKgc~--~f~~g~~~~~~~~~~LcVA-vKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP--~~~~sl~~~~~~~ 567 (760)
. .=|-+ .+.++.....+ |++|. .-| ++.+|++... .+.++.+ +.+.|++|.++.-
T Consensus 281 t-------lyGHqd~v~~IdaL~reR---~vtVGgrDr----T~rlwKi~ee------sqlifrg~~~sidcv~~In~~H 340 (479)
T KOG0299|consen 281 T-------LYGHQDGVLGIDALSRER---CVTVGGRDR----TVRLWKIPEE------SQLIFRGGEGSIDCVAFINDEH 340 (479)
T ss_pred H-------HhCCccceeeechhcccc---eEEeccccc----eeEEEecccc------ceeeeeCCCCCeeeEEEecccc
Confidence 1 01111 23444444444 78887 555 8888997432 1233333 3578889988777
Q ss_pred EEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEEEecceEEEEcCCCCcccccceecCC
Q psy3725 568 LCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVFHSLAAYVDSQGHKSREKEIMYPA 646 (760)
Q Consensus 568 LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~~~gvfVD~~G~rsR~~~I~W~~ 646 (760)
+..|...| -.++++.. -.|+...++..+ |...+.++... -|-.
T Consensus 341 fvsGSdnG~IaLWs~~K----------------------Kkplf~~~~AHg------------v~~~~~~~~~~--~Wit 384 (479)
T KOG0299|consen 341 FVSGSDNGSIALWSLLK----------------------KKPLFTSRLAHG------------VIPELDPVNGN--FWIT 384 (479)
T ss_pred eeeccCCceEEEeeecc----------------------cCceeEeecccc------------ccCCccccccc--ccee
Confidence 77787765 45555541 234444444222 11111111111 3543
Q ss_pred CCcEEEeeCCeEEEEeCCeeEEEECcCC----cEEEEEecCC
Q psy3725 647 LPTGASYMDGQLLIFSETHVDVFNAESG----DWLQTVNIRR 684 (760)
Q Consensus 647 ~P~~~ay~~PYLlvf~~~~IEVr~i~tg----~lVQtI~~~~ 684 (760)
.-..+.|..=....-++..|-++-++.| ++++.+++..
T Consensus 385 sla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~G 426 (479)
T KOG0299|consen 385 SLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVG 426 (479)
T ss_pred eeEecccCceEEecCCCCceEEEEecCCccccceeeeccccc
Confidence 3333334433444455678899999887 5666665444
No 125
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.91 E-value=6.9 Score=38.95 Aligned_cols=56 Identities=23% Similarity=0.482 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHhhhHHHHHHHHhhhc
Q psy3725 82 SLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKM--ESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 82 al~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~--~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
+++.|| ..+++||..++...-.++.+|....+.. .+|..+++.|+.|+++++.|+.
T Consensus 76 ~ld~ei---~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 76 ELDAEI---KELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554 4556777777777777777777765443 6666777777777766665444
No 126
>KOG0977|consensus
Probab=78.52 E-value=3.4 Score=48.39 Aligned_cols=127 Identities=20% Similarity=0.225 Sum_probs=88.5
Q ss_pred hhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCc--CCCCCCCCCCcccchh--hHH--------
Q psy3725 4 LASKAGQEFRVSDEKDARSYLQALTTKTTQELEYLKHASSLGGPGVGTV--PGVGGPGDKNWRDRRS--QKL-------- 71 (760)
Q Consensus 4 ~~~~~~i~qwv~dek~ar~ylq~la~k~~~ele~lr~~~~~~~~~~~~~--~~~~~~~~~~w~~rr~--~k~-------- 71 (760)
-..|+.|-.-+.||--.|.-+|+=..-+.|||+.++..-. ..- ...-...|.-=++|+. +||
T Consensus 182 ~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~------~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiR 255 (546)
T KOG0977|consen 182 REELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHK------QEIEEERRKARRDTTADNREYFKNELALAIREIR 255 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccH------HHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH
Confidence 4567778888888988888899988889999988885300 000 0000000000112221 122
Q ss_pred ------HHHHHhhhHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 72 ------EKMELLNLQSSLNSEIQAKTQ-----------ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 72 ------~~~~~l~lqsal~~Ei~akq~-----------i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
-...|=++++..+.+|++=+. ..|||..+|.....+..+|.+.|.+|..|..+|+.|+-++++
T Consensus 256 aqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e 335 (546)
T KOG0977|consen 256 AQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDE 335 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhh
Confidence 123455778888888877663 669999999999999999999999999999999999999876
Q ss_pred HH
Q psy3725 135 LQ 136 (760)
Q Consensus 135 l~ 136 (760)
-+
T Consensus 336 ~~ 337 (546)
T KOG0977|consen 336 DQ 337 (546)
T ss_pred hh
Confidence 44
No 127
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.02 E-value=13 Score=38.45 Aligned_cols=73 Identities=7% Similarity=0.178 Sum_probs=34.3
Q ss_pred CCCcccchhhHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH-----------HHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 60 DKNWRDRRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSE-----------LIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 60 ~~~w~~rr~~k~~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~-----------~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
+..|-..+.-.-..+++..|. +|++|+. .++++|+.++.+ ....++...+.+++|++|..|++.+
T Consensus 76 ~~GWV~~~~Ls~~p~~~~rlp-~le~el~---~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 76 RTAWIPLKQLSTTPSLRTRVP-DLENQVK---TLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVA 151 (206)
T ss_pred CEEeEEHHHhcCCccHHHHHH-HHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777665554555554442 4455543 222333333322 2222333333555555555555555
Q ss_pred HHHHHHHH
Q psy3725 129 DSQLKELQ 136 (760)
Q Consensus 129 ~~e~~~l~ 136 (760)
+.++++++
T Consensus 152 ~~~~~~l~ 159 (206)
T PRK10884 152 QKKVDAAN 159 (206)
T ss_pred HHHHHHHH
Confidence 55555443
No 128
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=77.71 E-value=42 Score=33.75 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy3725 20 ARSYLQALTTKTTQELEYLKHA 41 (760)
Q Consensus 20 ar~ylq~la~k~~~ele~lr~~ 41 (760)
.+..++.++.....++..||..
T Consensus 45 tk~d~e~~~~~~~a~~~eLr~e 66 (177)
T PF07798_consen 45 TKSDLENQEYLFKAAIAELRSE 66 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555666666654
No 129
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=77.70 E-value=33 Score=37.91 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy3725 25 QALTTKTTQELEYLKHA 41 (760)
Q Consensus 25 q~la~k~~~ele~lr~~ 41 (760)
.+.-..+.+|++.||..
T Consensus 183 ~~~~~~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 183 RERKAELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344556667777754
No 130
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=77.67 E-value=5.1 Score=46.30 Aligned_cols=99 Identities=14% Similarity=0.181 Sum_probs=54.8
Q ss_pred ceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceee
Q psy3725 282 AYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIF 361 (760)
Q Consensus 282 ~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if 361 (760)
..+||+.-.. . ...|+++|+.+.+..+.+.+............... + +.|.+|.+.....+.+ .|..|
T Consensus 378 ~~~G~l~k~~--~-~~~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~-l------~~~~~v~pv~~~~~~~--~~~~~ 445 (478)
T PTZ00267 378 THGGYLYKYS--S-DMRWKKRYFYIGNGQLRISLSENPENDGVAPKSVN-L------ETVNDVFPVPEVYSQK--HPNQL 445 (478)
T ss_pred ccceEEeccC--C-CcchhhheEEecCCceEEEeccccccCCCCCcccc-H------HHhcccccccHHhcCC--CCceE
Confidence 3466664322 2 23499999999988888876543221111111111 1 1233332211111222 26667
Q ss_pred eeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 362 RITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 362 ~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
.|.+. .+ ..+++.|+|+.++..|+.+|+.+.
T Consensus 446 ~i~~~----~~--~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 446 VLWFN----NG--QKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred EEEec----CC--cEEEEecCChHHHHHHHHHHHHHh
Confidence 77322 13 357888999999999999998764
No 131
>KOG1645|consensus
Probab=77.48 E-value=32 Score=38.83 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=88.9
Q ss_pred EEEEecCCcccceeeeeEecCCcceEEEEecC-ceEEEEEcCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEE
Q psy3725 534 ILYEITRTKTRHKRLHEVILPTLAQCIHIFSE-GRLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAI 612 (760)
Q Consensus 534 l~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~-~~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~ 612 (760)
-.||+.......-..-|+..|+.+-+|++.+. +.+.+-+.+ +|+-|++.|... -
T Consensus 310 ~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs-----------------~pn~p~~r~il~--------~ 364 (463)
T KOG1645|consen 310 QFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRS-----------------NPNFPQSRFILG--------R 364 (463)
T ss_pred hhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecC-----------------CCCCccceeeee--------e
Confidence 34776554444455678888888888887752 255555543 244555555432 1
Q ss_pred EeCCCeEEEEecceEEEEcCCCCcccccceecCCCCcEEEeeCCeEEEEeC--CeeEEEECcCCcEEEEEec----CCce
Q psy3725 613 ELPRGEFLLVFHSLAAYVDSQGHKSREKEIMYPALPTGASYMDGQLLIFSE--THVDVFNAESGDWLQTVNI----RRAL 686 (760)
Q Consensus 613 ~l~~~EfLLcy~~~gvfVD~~G~rsR~~~I~W~~~P~~~ay~~PYLlvf~~--~~IEVr~i~tg~lVQtI~~----~~ir 686 (760)
....+-|-+|--.-++|=..+-+.++.+.|-= .| ...||++|.. +.+=+.++.+++++|++++ -+|.
T Consensus 365 ~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~--~~-----~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~epv~Dic 437 (463)
T KOG1645|consen 365 IDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRA--VE-----DNNYIVVVGDSTNELILQDPHSFEVVQTLALSEPVLDIC 437 (463)
T ss_pred eccccCceeeeecccccCCcccccccccceec--cc-----cccEEEEecCCcceeEEeccchhheeeecccCcceeecc
Confidence 12345566666666777111223333332210 11 1158888865 5677889999999999854 4578
Q ss_pred ecCCCCCEEEEecCCccEEEEeec
Q psy3725 687 PLDTRGSLCFSLANDIPYVVYLAN 710 (760)
Q Consensus 687 ~L~s~G~l~l~s~~~~~~~~~~~~ 710 (760)
|.+.+|+=||+...+-++=+|+++
T Consensus 438 p~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 438 PNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred eeecCCcchhhheecceEEEEecC
Confidence 888899999988766777777765
No 132
>KOG0932|consensus
Probab=77.28 E-value=1.1 Score=51.63 Aligned_cols=93 Identities=19% Similarity=0.324 Sum_probs=63.7
Q ss_pred ccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCCCcc
Q psy3725 296 KKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKN 375 (760)
Q Consensus 296 kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~~~~ 375 (760)
++||+.-|++|-|.- ++++.++-+ |+-..+ .=|| ++-++|+...+.-..+-.|| |.+|++.+-+ | .
T Consensus 529 kRgWk~fya~LkG~v-LYlqkDey~---p~kals-e~~l-knavsvHHALAt~AtdY~KK--p~Vf~lrtAd--w----r 594 (774)
T KOG0932|consen 529 KRGWKMFYAVLKGMV-LYLQKDEYK---PGKALS-ESDL-KNAVSVHHALATPATDYSKK--PHVFKLRTAD--W----R 594 (774)
T ss_pred chhHHHHHHHHhhhe-EEeeccccC---cccchh-hhhh-hhhhhhhhhhcCCCcccccC--CceEEEEecc--c----e
Confidence 689999999999985 556664433 221111 1234 66678866555433333343 8999997654 2 4
Q ss_pred eEEEeeCCHHHHHHHHHHHHHHHHHHh
Q psy3725 376 HTLMLADSDTEKTKWVVALSELHRILK 402 (760)
Q Consensus 376 ~l~LlA~S~~ek~kWv~~L~~~~~~l~ 402 (760)
.+++=|+|..+.+.|+..|+=+..+..
T Consensus 595 v~LFQaps~eEmqsWi~rIN~vAA~fS 621 (774)
T KOG0932|consen 595 VFLFQAPSQEEMQSWIERINLVAAAFS 621 (774)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHHhcc
Confidence 688899999999999999987776544
No 133
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=77.10 E-value=1.1e+02 Score=32.98 Aligned_cols=135 Identities=18% Similarity=0.214 Sum_probs=76.3
Q ss_pred EEEEEEecCCcccceeeeeEecCCcceEEEEecCc-eEEEEEc--CCeEEEEecCCCCceeecCCCCCcccccccCCCCc
Q psy3725 532 QIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG-RLCVGYQ--SGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDA 608 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~-~LcVG~~--~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~p 608 (760)
.|.+|.+..+ ...+..+.+..++.+..|.+.+++ .|.||.. .+...+++++++... +... ......|
T Consensus 13 ~I~~~~~~~~-g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-~~~~--------~~~~~~p 82 (330)
T PRK11028 13 QIHVWNLNHE-GALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-FAAE--------SPLPGSP 82 (330)
T ss_pred CEEEEEECCC-CceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-Eeee--------ecCCCCc
Confidence 6777877432 234566677777888889998776 4677764 345556775222221 1110 0001235
Q ss_pred eEEEEeCCCeEEE--Eecc--eEEE-EcCCCCcccc-cceecCCCCcEEEeeCC--eEEEEe--CCeeEEEECcC-CcE
Q psy3725 609 LLAIELPRGEFLL--VFHS--LAAY-VDSQGHKSRE-KEIMYPALPTGASYMDG--QLLIFS--ETHVDVFNAES-GDW 676 (760)
Q Consensus 609 l~i~~l~~~EfLL--cy~~--~gvf-VD~~G~rsR~-~~I~W~~~P~~~ay~~P--YLlvf~--~~~IEVr~i~t-g~l 676 (760)
..+.--.++.+|. +|.. +.+| +|..|..... ..+.....|..+++... ||++.+ .+.|.|+++.+ |.+
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 4444445666665 3322 3333 3555644322 23445567888877643 887765 57899999987 444
No 134
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=76.99 E-value=22 Score=32.93 Aligned_cols=88 Identities=24% Similarity=0.343 Sum_probs=48.4
Q ss_pred cceeeeeecccccccccceEEEEEEEeCc-EEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccce
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDF-KLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPC 359 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~-kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~ 359 (760)
-.++|.|. +..|.- .+++++.+.+. +|+++|-... ...-.|.+ +...+|..+.. .
T Consensus 13 Il~~g~v~--K~kgl~--~kkR~liLTd~PrL~Yvdp~~~-------~~KGeI~~-~~~l~v~~k~~------------~ 68 (104)
T PF14593_consen 13 ILKQGYVK--KRKGLF--AKKRQLILTDGPRLFYVDPKKM-------VLKGEIPW-SKELSVEVKSF------------K 68 (104)
T ss_dssp EEEEEEEE--EEETTE--EEEEEEEEETTTEEEEEETTTT-------EEEEEE---STT-EEEECSS------------S
T ss_pred EEEEEEEE--EeeceE--EEEEEEEEccCCEEEEEECCCC-------eECcEEec-CCceEEEEccC------------C
Confidence 34667663 222221 57777777776 9999986442 12234444 33444433322 3
Q ss_pred eeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHH
Q psy3725 360 IFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRI 400 (760)
Q Consensus 360 if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~ 400 (760)
.|.|.+ |+ .+ |.+.+.+..-.+|+++|+++...
T Consensus 69 ~F~I~t-----p~--Rt-Y~l~d~~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 69 TFFIHT-----PK--RT-YYLEDPEGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp EEEEEE-----TT--EE-EEEE-TTS-HHHHHHHHHHHHHH
T ss_pred EEEEEC-----CC--cE-EEEECCCCCHHHHHHHHHHHHHH
Confidence 566642 33 33 44566777888899999998763
No 135
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=76.49 E-value=26 Score=39.45 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 81 SSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 81 sal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
+.|+.-++-=...+++|+.++..+-.+..-+.+.-..+.++.+|+++.|.+++|
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566677888887777777777777777777777777777777776
No 136
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=76.34 E-value=8.6 Score=44.34 Aligned_cols=42 Identities=24% Similarity=0.255 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 94 SEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 94 ~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
+.+|.+.|.+.-.+.+++++.+.++++|..|++.|+.+++.+
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 555566665555556777777788888888888888777653
No 137
>KOG2110|consensus
Probab=76.30 E-value=1.2e+02 Score=34.16 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=35.0
Q ss_pred eeeeeEecCCcceEEEEecCceEEEEEcCCeEEEEecCCCCc
Q psy3725 546 KRLHEVILPTLAQCIHIFSEGRLCVGYQSGFSIYKFSQDNRP 587 (760)
Q Consensus 546 kk~kE~~lP~~~~sl~~~~~~~LcVG~~~gF~ivdl~~~~~~ 587 (760)
..+.|+..|.++-++.+-+. ||||-....-.+|||. +..+
T Consensus 79 ~~ICe~~fpt~IL~VrmNr~-RLvV~Lee~IyIydI~-~Mkl 118 (391)
T KOG2110|consen 79 TTICEIFFPTSILAVRMNRK-RLVVCLEESIYIYDIK-DMKL 118 (391)
T ss_pred ceEEEEecCCceEEEEEccc-eEEEEEcccEEEEecc-ccee
Confidence 45889999999999999999 9999999999999997 4433
No 138
>KOG0772|consensus
Probab=76.04 E-value=1.7e+02 Score=34.41 Aligned_cols=123 Identities=15% Similarity=0.257 Sum_probs=75.0
Q ss_pred CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC-----cceeecCcccceEE-EEeeeeCCCccceEEEEEEec
Q psy3725 454 DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE-----VEWVKIPETKGCLS-FTTGPLTHTRTQHCLALAVKR 527 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~-----~~~~kl~etKgc~~-f~~g~~~~~~~~~~LcVAvKr 527 (760)
+...|.-+.+-+--+.+|+++| .-+..+|+-+.+.-.+ .-..-+..|||-.. ++.|-........+|-.+--
T Consensus 213 E~h~i~sl~ys~Tg~~iLvvsg-~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D- 290 (641)
T KOG0772|consen 213 ETHQINSLQYSVTGDQILVVSG-SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD- 290 (641)
T ss_pred cccccceeeecCCCCeEEEEec-CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCC-
Confidence 4456777777777899999999 5688899887765322 22245556787543 44554433111125554443
Q ss_pred CCceEEEEEEecCCcccceeeeeEec---CCcceEEEEecCc-eEEEEEcCC-eEEEEe
Q psy3725 528 QNSSQIILYEITRTKTRHKRLHEVIL---PTLAQCIHIFSEG-RLCVGYQSG-FSIYKF 581 (760)
Q Consensus 528 ~~~~~Vl~ye~~~~k~~fkk~kE~~l---P~~~~sl~~~~~~-~LcVG~~~g-F~ivdl 581 (760)
-++.+|+.++.|...+.++--.. --+|.+.+|.++| .|.-||..| -++++.
T Consensus 291 ---gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~ 346 (641)
T KOG0772|consen 291 ---GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK 346 (641)
T ss_pred ---CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeec
Confidence 37889998877654333332211 2346778999887 455577765 566665
No 139
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=75.55 E-value=13 Score=31.69 Aligned_cols=47 Identities=19% Similarity=0.339 Sum_probs=41.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 91 TQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 91 q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
+.|+|+|.++....-..+.++...|++...+..+++.+.+++++++.
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999988764
No 140
>KOG2321|consensus
Probab=75.31 E-value=1.6e+02 Score=35.02 Aligned_cols=245 Identities=11% Similarity=0.129 Sum_probs=125.8
Q ss_pred CCeeEEEEecCCCe-EEEEEc-------CCCC-CCceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC
Q psy3725 422 TKKIYQMDYIPKEQ-LLVVLA-------GKQR-YVQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE 492 (760)
Q Consensus 422 ~~~i~Caa~~~~~r-llvGTe-------~l~~-~~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~ 492 (760)
.++|.|.- |+.. ++.||= ++.. .-.+.|-.+.-.|.=+-+..++..+++|.. +|+|-++.-...-
T Consensus 54 st~ik~s~--DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~-DR~IefHak~G~h--- 127 (703)
T KOG2321|consen 54 STRIKVSP--DGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQN-DRTIEFHAKYGRH--- 127 (703)
T ss_pred cceeEecC--CCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeec-CceeeehhhcCee---
Confidence 45666652 5554 678876 1211 124455556444444444455677777765 4666555432211
Q ss_pred cceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecC-CcceEEEEec-CceEEE
Q psy3725 493 VEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILP-TLAQCIHIFS-EGRLCV 570 (760)
Q Consensus 493 ~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP-~~~~sl~~~~-~~~LcV 570 (760)
..+++| +-|--++..... +-++|||... .|+.+++..+.+ - .-|.+- .++.++.+.. .|-||+
T Consensus 128 -y~~RIP--~~GRDm~y~~~s----cDly~~gsg~----evYRlNLEqGrf--L--~P~~~~~~~lN~v~in~~hgLla~ 192 (703)
T KOG2321|consen 128 -YRTRIP--KFGRDMKYHKPS----CDLYLVGSGS----EVYRLNLEQGRF--L--NPFETDSGELNVVSINEEHGLLAC 192 (703)
T ss_pred -eeeecC--cCCccccccCCC----ccEEEeecCc----ceEEEEcccccc--c--cccccccccceeeeecCccceEEe
Confidence 123444 223333332222 2267888765 788888766543 2 223332 3444555554 358999
Q ss_pred EEcCC-eEEEEecCCCCceeecCCCC--------------CcccccccCCCCce-EEEEeCCCeEEEEec---ceEEEEc
Q psy3725 571 GYQSG-FSIYKFSQDNRPIPLIHQDN--------------PLVSLLTYSPVDAL-LAIELPRGEFLLVFH---SLAAYVD 631 (760)
Q Consensus 571 G~~~g-F~ivdl~~~~~~~~Ll~~~d--------------~sl~f~~~~~~~pl-~i~~l~~~EfLLcy~---~~gvfVD 631 (760)
|...| -+++|.. +-+....++.+. +++.|-. +++ .++-.+.+. .|.|| .--++|-
T Consensus 193 Gt~~g~VEfwDpR-~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d----~gL~~aVGts~G~-v~iyDLRa~~pl~~k 266 (703)
T KOG2321|consen 193 GTEDGVVEFWDPR-DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD----DGLHVAVGTSTGS-VLIYDLRASKPLLVK 266 (703)
T ss_pred cccCceEEEecch-hhhhheeeecccccCCCccccccCcceEEEecC----CceeEEeeccCCc-EEEEEcccCCceeec
Confidence 99544 6677764 222222222111 1112211 122 122222222 22332 2234455
Q ss_pred CCCCcccccceecCCCCcEEEeeCCeEEEEeCCeeEEEECcCCcEEEEE----ecCCceecCCCCCEEEEe
Q psy3725 632 SQGHKSREKEIMYPALPTGASYMDGQLLIFSETHVDVFNAESGDWLQTV----NIRRALPLDTRGSLCFSL 698 (760)
Q Consensus 632 ~~G~rsR~~~I~W~~~P~~~ay~~PYLlvf~~~~IEVr~i~tg~lVQtI----~~~~ir~L~s~G~l~l~s 698 (760)
.+|-..--..|.|-.. =..+-|+-....-+-||+-.+|.-.-.| .++.+.+....|-+|++.
T Consensus 267 dh~~e~pi~~l~~~~~-----~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 267 DHGYELPIKKLDWQDT-----DQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred ccCCccceeeeccccc-----CCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEec
Confidence 5665554456788655 1234566677778899999999776666 456666666677777664
No 141
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=75.25 E-value=56 Score=30.36 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHH
Q psy3725 21 RSYLQALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKT 100 (760)
Q Consensus 21 r~ylq~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~lqsal~~Ei~akq~i~eeL~k~ 100 (760)
|.-||+=-..|..+||.+|.|.. .| |+-|..+..-+...
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~--------------------------------------eL---~kqkd~L~~~l~~L 49 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQG--------------------------------------EL---AKQKDQLRNALQSL 49 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH--------------------------------------HH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH--------------------------------------HH---HHhHHHHHHHHHHH
Confidence 45566666678888888888722 11 44455566666777
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 101 RSELIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 101 ~~~~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
++.+.+..+++.+.++++.++...++.-
T Consensus 50 ~~q~~s~~qr~~eLqaki~ea~~~le~e 77 (107)
T PF09304_consen 50 QAQNASRNQRIAELQAKIDEARRNLEDE 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888888888888763
No 142
>PRK11637 AmiB activator; Provisional
Probab=75.21 E-value=18 Score=41.47 Aligned_cols=44 Identities=11% Similarity=0.266 Sum_probs=21.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 91 TQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 91 q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
..+.++|..+...+-.++.++.+.+.+...+..+|+.+++++++
T Consensus 78 ~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 78 KKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555555555555555544444444
No 143
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=75.12 E-value=33 Score=39.68 Aligned_cols=137 Identities=14% Similarity=0.169 Sum_probs=65.7
Q ss_pred CcceEEEEecCc-eEEEEEcCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEEEec--ceEEEEc
Q psy3725 555 TLAQCIHIFSEG-RLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVFH--SLAAYVD 631 (760)
Q Consensus 555 ~~~~sl~~~~~~-~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~--~~gvfVD 631 (760)
..|++|++.++| .++|.-...|.+|.-.+ .... .| -.+..++-++++.|...-. +.-||-|
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~-~r~k----------~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALA-WRNK----------AF-----GSGLSFVWSSRNRYAVLESSSTIKIYKN 96 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTT-TEEE----------EE-----EE-SEEEE-TSSEEEEE-TTS-EEEEET
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccC-Cccc----------cc-----CceeEEEEecCccEEEEECCCeEEEEEc
Confidence 348889998776 66666666798888431 1100 00 1112233334555554442 2334445
Q ss_pred CCCCcccccceecCCCCcEEEeeCCeEEEEeCCeeEEEECcCCcEEEEEecCCceec--CCCCCEEEEecCCccEEEEee
Q psy3725 632 SQGHKSREKEIMYPALPTGASYMDGQLLIFSETHVDVFNAESGDWLQTVNIRRALPL--DTRGSLCFSLANDIPYVVYLA 709 (760)
Q Consensus 632 ~~G~rsR~~~I~W~~~P~~~ay~~PYLlvf~~~~IEVr~i~tg~lVQtI~~~~ir~L--~s~G~l~l~s~~~~~~~~~~~ 709 (760)
..+..++. |.-+..+..+-+ .+.|.+-.+++|-+++++++.+|..|....++-+ +.+|..+...+.+ .+.++..
T Consensus 97 ~~~~~~k~--i~~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 97 FKNEVVKS--IKLPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp TEE-TT-------SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred CccccceE--EcCCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 55544433 443434444444 5566666777799999999999999988876644 3456666554432 3444444
Q ss_pred cc
Q psy3725 710 NI 711 (760)
Q Consensus 710 ~~ 711 (760)
+.
T Consensus 173 ~~ 174 (443)
T PF04053_consen 173 NL 174 (443)
T ss_dssp -H
T ss_pred cc
Confidence 43
No 144
>PRK11637 AmiB activator; Provisional
Probab=74.99 E-value=34 Score=39.15 Aligned_cols=8 Identities=38% Similarity=0.451 Sum_probs=4.2
Q ss_pred eccCcccc
Q psy3725 344 VRESDVIH 351 (760)
Q Consensus 344 V~~sdvi~ 351 (760)
|..-|+|.
T Consensus 389 V~~G~~ig 396 (428)
T PRK11637 389 VRAGQPIA 396 (428)
T ss_pred ECCCCeEE
Confidence 55555554
No 145
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=74.57 E-value=12 Score=36.90 Aligned_cols=55 Identities=11% Similarity=0.236 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 79 LQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 79 lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
|+..|.++..+-+.+++|+.+.-+.+...+..|++.++..+.+..|++...+...
T Consensus 32 LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~ 86 (160)
T PF13094_consen 32 LERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAH 86 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444557888889999999999999999999999999999999998888877753
No 146
>KOG0647|consensus
Probab=74.33 E-value=49 Score=36.23 Aligned_cols=164 Identities=10% Similarity=0.166 Sum_probs=94.5
Q ss_pred CcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCc-eEEE-EEcCCe
Q psy3725 499 PETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG-RLCV-GYQSGF 576 (760)
Q Consensus 499 ~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~-~LcV-G~~~gF 576 (760)
+++..+..|.= .... ++|+.-. --+|.+|++..+ ..+..---..++.|+-+++|..+| ++.. ||.+.-
T Consensus 27 ~DsIS~l~FSP---~~~~---~~~A~SW---D~tVR~wevq~~-g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~ 96 (347)
T KOG0647|consen 27 EDSISALAFSP---QADN---LLAAGSW---DGTVRIWEVQNS-GQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQA 96 (347)
T ss_pred ccchheeEecc---ccCc---eEEeccc---CCceEEEEEecC-CcccchhhhccCCCeEEEEEccCCceEEeeccCCce
Confidence 35666776753 1111 4444333 337889998664 122222235678999999999887 5555 456778
Q ss_pred EEEEecCCCCceee--cCC-----------C---------CCcccccccCCCCceEEEEeCCC--------eEEE--Ee-
Q psy3725 577 SIYKFSQDNRPIPL--IHQ-----------D---------NPLVSLLTYSPVDALLAIELPRG--------EFLL--VF- 623 (760)
Q Consensus 577 ~ivdl~~~~~~~~L--l~~-----------~---------d~sl~f~~~~~~~pl~i~~l~~~--------EfLL--cy- 623 (760)
.++||. ++++..+ .+. . |.+|.|---++..|++.++|++. ++|. |-
T Consensus 97 k~wDL~-S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~ 175 (347)
T KOG0647|consen 97 KLWDLA-SGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAE 175 (347)
T ss_pred EEEEcc-CCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecC
Confidence 999997 3333221 111 1 55566655556777777777532 2221 11
Q ss_pred cceEEEEcCCCCccc----ccceecCCCCcEEEe-eCCeEEEEeCCeeEEEECcCC
Q psy3725 624 HSLAAYVDSQGHKSR----EKEIMYPALPTGASY-MDGQLLIFSETHVDVFNAESG 674 (760)
Q Consensus 624 ~~~gvfVD~~G~rsR----~~~I~W~~~P~~~ay-~~PYLlvf~~~~IEVr~i~tg 674 (760)
.++.+| |..+-++. ...|+|.-.-.++.- ..-|+++--+..+.|++|..+
T Consensus 176 r~i~vy-nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 176 RHIAVY-NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred CcEEEE-EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence 233344 44333332 235888766444332 245888888999999998875
No 147
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.69 E-value=34 Score=35.49 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 100 TRSELIAAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 100 ~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
.+++|-.+..+|.++++++++|..|++.+++..
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666666665544
No 148
>PF14182 YgaB: YgaB-like protein
Probab=73.29 E-value=20 Score=31.37 Aligned_cols=50 Identities=26% Similarity=0.384 Sum_probs=34.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHhhhHHHHHHHHhhh
Q psy3725 72 EKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDF--RLKMESVSMDLRRKDSQLKELQSRL 139 (760)
Q Consensus 72 ~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~--e~~~~~l~~e~~~l~~e~~~l~~~~ 139 (760)
.|-.+|.|||.|+.= |. .|++|.+. ++....+..||.++++++++++.-+
T Consensus 12 tMD~LL~LQsElERC----qe--------------IE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~F 63 (79)
T PF14182_consen 12 TMDKLLFLQSELERC----QE--------------IEKELKELEREAELHSIQEEISQMKKELKEIQRVF 63 (79)
T ss_pred HHHHHHHHHHHHHHH----HH--------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788998887742 22 23444443 5778888999999999998887433
No 149
>KOG1539|consensus
Probab=72.76 E-value=2e+02 Score=35.51 Aligned_cols=256 Identities=13% Similarity=0.108 Sum_probs=136.2
Q ss_pred CCceeeeeeeecCCCCeeEEEEecC-CCeEEEEEc-------CCCCCCceEEcCC-CCCeeEEEEecCCCeEEEEECCCC
Q psy3725 408 NHTVSTPKIARVGDTKKIYQMDYIP-KEQLLVVLA-------GKQRYVQIARVGD-TKKIYQMDYIPEEQLLVVLAGKQR 478 (760)
Q Consensus 408 ~~~v~~~~e~~d~~~~~i~Caa~~~-~~rllvGTe-------~l~~~~~l~rv~~-~k~V~QI~Vi~e~~lLlvLsgk~r 478 (760)
++-||..++.++. |+|+.+.- =|-|+||++ ++..+..++.+-. -.+|+-+..=.+-+=+++.+++..
T Consensus 192 ~K~v~~f~~~~s~----IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G 267 (910)
T KOG1539|consen 192 GKVVYTFQEFFSR----ITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNG 267 (910)
T ss_pred CcEEEEecccccc----eeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCc
Confidence 3456776665543 56655421 246899999 3445534444433 478999999999999999998888
Q ss_pred eEEEEECCCccCCCcceeecCcccceEE----EEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecC
Q psy3725 479 YVRLVPVRALDGDEVEWVKIPETKGCLS----FTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILP 554 (760)
Q Consensus 479 ~L~l~~L~~L~~~~~~~~kl~etKgc~~----f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP 554 (760)
.+.+++|+ ... .+.-++++|. ++. .+.+.+ .|+-|-+ .|++++.+|..+.+.+++-+.++ -..
T Consensus 268 ~m~~wDLe---~kk----l~~v~~nah~~sv~~~~-fl~~ep---Vl~ta~~-DnSlk~~vfD~~dg~pR~LR~R~-GHs 334 (910)
T KOG1539|consen 268 DMAFWDLE---KKK----LINVTRNAHYGSVTGAT-FLPGEP---VLVTAGA-DNSLKVWVFDSGDGVPRLLRSRG-GHS 334 (910)
T ss_pred eEEEEEcC---CCe----eeeeeeccccCCcccce-ecCCCc---eEeeccC-CCceeEEEeeCCCCcchheeecc-CCC
Confidence 99999983 211 1112233331 111 122223 4555544 58899999996666555444443 345
Q ss_pred CcceEEEEecC-ceEEE--EEcCCeEEEEecCCCCceeecC---CCC--Ccccc-cccCCCCceEEEEeC-------CCe
Q psy3725 555 TLAQCIHIFSE-GRLCV--GYQSGFSIYKFSQDNRPIPLIH---QDN--PLVSL-LTYSPVDALLAIELP-------RGE 618 (760)
Q Consensus 555 ~~~~sl~~~~~-~~LcV--G~~~gF~ivdl~~~~~~~~Ll~---~~d--~sl~f-~~~~~~~pl~i~~l~-------~~E 618 (760)
.||.+|.|... |..|. +-++.|..+++-.+...+++-. +-+ +--.| .......|+.+|... ++-
T Consensus 335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv 414 (910)
T KOG1539|consen 335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV 414 (910)
T ss_pred CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence 77888999854 33333 2233354444421111122211 110 00001 000123455555442 233
Q ss_pred EEEEecceEEEEcCCCCcccc---------cceecCCCCcEEEeeCCeE-EEEeCCeeEEEECcCCcEEEEE
Q psy3725 619 FLLVFHSLAAYVDSQGHKSRE---------KEIMYPALPTGASYMDGQL-LIFSETHVDVFNAESGDWLQTV 680 (760)
Q Consensus 619 fLLcy~~~gvfVD~~G~rsR~---------~~I~W~~~P~~~ay~~PYL-lvf~~~~IEVr~i~tg~lVQtI 680 (760)
+-.|++..-.|+=..+...-. ..+.=......+.+...|. ++++...||++++++|-...+.
T Consensus 415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf 486 (910)
T KOG1539|consen 415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF 486 (910)
T ss_pred eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc
Confidence 455666666664332222111 1111222222333455664 4577889999999999777665
No 150
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=72.71 E-value=28 Score=32.88 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=29.8
Q ss_pred ccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 356 DIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 356 dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
..-+.|-|...+ + ...++|+|-|+.+|.+|+++|+.+..
T Consensus 74 ~~~~~f~L~~~~-~----~~~~~f~~Ktee~K~kWm~al~~a~s 112 (116)
T cd01223 74 RWKYGFYLAHKQ-G----KTGFTFYFKTEHLRKKWLKALEMAMS 112 (116)
T ss_pred ceEEEEEEEecC-C----CccEEEEeCCHHHHHHHHHHHHHHHh
Confidence 456777775432 1 24589999999999999999998865
No 151
>KOG1273|consensus
Probab=72.48 E-value=1e+02 Score=34.05 Aligned_cols=60 Identities=27% Similarity=0.365 Sum_probs=38.0
Q ss_pred EecCCcceEEEEecCc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEe-CCCeEEEEe
Q psy3725 551 VILPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIEL-PRGEFLLVF 623 (760)
Q Consensus 551 ~~lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l-~~~EfLLcy 623 (760)
+..|. +.|+.|.+-| .|.|||..| -.|||+. ++.+-.. ....+.|++-+-- .++.+||.-
T Consensus 21 ld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~-T~~iar~-----------lsaH~~pi~sl~WS~dgr~Llts 83 (405)
T KOG1273|consen 21 LDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFD-TFRIARM-----------LSAHVRPITSLCWSRDGRKLLTS 83 (405)
T ss_pred ccCCc-cceEEeccCcceeeeeccCCcEEEEEcc-ccchhhh-----------hhccccceeEEEecCCCCEeeee
Confidence 34455 6788888654 899999988 7788887 4433222 2245777754443 456677644
No 152
>KOG2264|consensus
Probab=72.18 E-value=13 Score=43.35 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 82 SLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 82 al~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
++....|-+..+++||++..+.-..++++..+...+++||+++|.+++.|++.|+
T Consensus 80 ~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk 134 (907)
T KOG2264|consen 80 ILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALK 134 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3555566677777777777776666777777777777777777766666665554
No 153
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=71.82 E-value=50 Score=35.86 Aligned_cols=57 Identities=18% Similarity=0.328 Sum_probs=45.9
Q ss_pred EEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEc-CCeEEEEec
Q psy3725 520 CLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQ-SGFSIYKFS 582 (760)
Q Consensus 520 ~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~-~gF~ivdl~ 582 (760)
+|++|+.. +|++|++..++ .+.+..++..|..+.+|..+++ .|.||-. +|+.++..+
T Consensus 100 ~lv~~~g~----~l~v~~l~~~~-~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 100 RLVVAVGN----KLYVYDLDNSK-TLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEETT----EEEEEEEETTS-SEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEEEEEE
T ss_pred EEEEeecC----EEEEEEccCcc-cchhhheecceEEEEEEecccc-EEEEEEcccCEEEEEEE
Confidence 58889876 88888887665 4677778889999999999988 9999974 688888765
No 154
>KOG3532|consensus
Probab=71.64 E-value=0.96 Score=53.19 Aligned_cols=48 Identities=0% Similarity=-0.236 Sum_probs=42.5
Q ss_pred CCCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccc
Q psy3725 206 RSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDK 255 (760)
Q Consensus 206 ~~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~ 255 (760)
....+|.|....|.+.+.|+.|+.-||. .-++.|+.|...||++|...
T Consensus 742 ~~~~~~d~~~~h~~r~~~~~~~~~ki~~--~~a~~~~~~~~~~~~k~~~~ 789 (1051)
T KOG3532|consen 742 GTEDGGDDEEAHLDRKRSASTRKAKIQA--TFAAGKKKVLDLMPQKRKNT 789 (1051)
T ss_pred CCCCCCchHHhhhhhhcccchhccceee--hhhhcccHHHHhcchhhhcc
Confidence 3567899999999999999999999995 56789999999999999654
No 155
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=71.62 E-value=42 Score=41.05 Aligned_cols=111 Identities=17% Similarity=0.246 Sum_probs=58.3
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCC--cccchhhHHHHHHHhhhHHHHHHHHHHH
Q psy3725 13 RVSDEKDARSYLQALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKN--WRDRRSQKLEKMELLNLQSSLNSEIQAK 90 (760)
Q Consensus 13 wv~dek~ar~ylq~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~--w~~rr~~k~~~~~~l~lqsal~~Ei~ak 90 (760)
--++|+-+|+-|++|-.+. |+|+. |-... ..++-.|++ =..+|--+.++.+|.+|+..|.+|-+||
T Consensus 451 l~~~Er~lk~eL~qlr~en-e~Lq~-Kl~~L----------~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r 518 (697)
T PF09726_consen 451 LTNNERSLKSELSQLRQEN-EQLQN-KLQNL----------VQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKAR 518 (697)
T ss_pred ccccchHHHHHHHHHHHHH-HHHHH-HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888775443 23332 10000 011111111 1245566788899999999999999998
Q ss_pred HhhHHHHHHHH--------HHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 91 TQISEELSKTR--------SELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 91 q~i~eeL~k~~--------~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
+.=.|--.+.. +.-.+..++.++.|..++.|..|+..+++++.++
T Consensus 519 ~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~ 571 (697)
T PF09726_consen 519 KEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIREL 571 (697)
T ss_pred hHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87332222110 1112233445555555555555555554444433
No 156
>KOG1962|consensus
Probab=71.41 E-value=15 Score=38.16 Aligned_cols=51 Identities=27% Similarity=0.405 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhccC
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLESG 142 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~~g 142 (760)
.+.+||.+...++..++.+..+.++|.+++..|.++|.+|-..+|.+++.|
T Consensus 162 kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 162 KLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 344555555555666666666666677777777777766666666555543
No 157
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=70.55 E-value=73 Score=34.59 Aligned_cols=52 Identities=21% Similarity=0.416 Sum_probs=41.4
Q ss_pred eEEEEEEecCC---cccceeeeeEecCCcceEEEEecCceEEEEEcCCeEEEEecC
Q psy3725 531 SQIILYEITRT---KTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSGFSIYKFSQ 583 (760)
Q Consensus 531 ~~Vl~ye~~~~---k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~gF~ivdl~~ 583 (760)
=.|++|++..+ ...++.+.+..++++|.+|.-+++ +|++|..+...++++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~-~lv~~~g~~l~v~~l~~ 116 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNG-RLVVAVGNKLYVYDLDN 116 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETT-EEEEEETTEEEEEEEET
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCC-EEEEeecCEEEEEEccC
Confidence 35888888764 234677788889999999999977 99999999999999973
No 158
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=70.44 E-value=88 Score=31.41 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=20.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 88 QAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 88 ~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
..++...+++...+.....+++++.+..+..++++.+++.++.+++++
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444433333334444444444443
No 159
>KOG2110|consensus
Probab=70.34 E-value=54 Score=36.67 Aligned_cols=123 Identities=20% Similarity=0.291 Sum_probs=75.4
Q ss_pred eEEEEEcCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEEEecceEEEEcC-CCCccc------c
Q psy3725 567 RLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVFHSLAAYVDS-QGHKSR------E 639 (760)
Q Consensus 567 ~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~~~gvfVD~-~G~rsR------~ 639 (760)
.|+||...||.+++.+ ...- +.+ ...+-..|++. | -=+.+-++|+. +||+.+ .
T Consensus 19 ~lsvGs~~Gyk~~~~~-~~~k--~~~-----------~~~~~~~IvEm-----L-FSSSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 19 LLSVGSKDGYKIFSCS-PFEK--CFS-----------KDTEGVSIVEM-----L-FSSSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred EEEccCCCceeEEecC-chHH--hhc-----------ccCCCeEEEEe-----e-cccceeEEEecCCCceEEEEEcccC
Confidence 8999999999999996 2211 111 11222233322 0 00122244554 222221 1
Q ss_pred ---cceecCCCCcEEEeeCCeEEEEeCCeeEEEECcCCcEEEEEecC--Cce-e--cC--------------CCCCEEEE
Q psy3725 640 ---KEIMYPALPTGASYMDGQLLIFSETHVDVFNAESGDWLQTVNIR--RAL-P--LD--------------TRGSLCFS 697 (760)
Q Consensus 640 ---~~I~W~~~P~~~ay~~PYLlvf~~~~IEVr~i~tg~lVQtI~~~--~ir-~--L~--------------s~G~l~l~ 697 (760)
-++.++..-++|.++.--|+|.-+..|-|++|.++.++.||..- +-+ . +. +.|.++++
T Consensus 79 ~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 79 TTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred ceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 15889998899999999999999999999999999999998322 322 1 11 25666666
Q ss_pred ecCCccEEEEee
Q psy3725 698 LANDIPYVVYLA 709 (760)
Q Consensus 698 s~~~~~~~~~~~ 709 (760)
....++-+.+.+
T Consensus 159 d~~nl~~v~~I~ 170 (391)
T KOG2110|consen 159 DTINLQPVNTIN 170 (391)
T ss_pred EcccceeeeEEE
Confidence 665555555544
No 160
>KOG3723|consensus
Probab=70.21 E-value=2.5 Score=49.02 Aligned_cols=102 Identities=20% Similarity=0.349 Sum_probs=66.7
Q ss_pred ceeeeeecccccccc--cceEEEEEEEeCcEEEE-EecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccc
Q psy3725 282 AYEGYVKVPKTGGVK--KGWVRQFVVVCDFKLFL-YDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIP 358 (760)
Q Consensus 282 ~~eG~vkvp~~~~~k--kgw~r~~~~l~~~kL~~-yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip 358 (760)
..||.+|- |.|.++ +.|..+|+.|.|-.|.+ --..++++..| .||++. +++|.+--- .-+.+.+|
T Consensus 736 ~iEGQLKE-KKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS~~~------~IDl~~----IRSVk~v~~-kr~~rslp 803 (851)
T KOG3723|consen 736 LIEGQLKE-KKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDSDDC------PIDLSK----IRSVKAVAK-KRRDRSLP 803 (851)
T ss_pred hhcchhhh-hccchhhhhhhccceEEecchhhhcccCCCCCCCCCC------CccHHH----hhhHHHHHh-hhhhcccc
Confidence 45777763 345543 78999999999988555 23333333222 377743 555553211 33455799
Q ss_pred eeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHh
Q psy3725 359 CIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILK 402 (760)
Q Consensus 359 ~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~ 402 (760)
.-|.|-+- -.++.|-|-++....+|+..|+-+..--+
T Consensus 804 KAFEIFTA-------D~T~ILKaKDeKNAEEWlqCL~IavAHa~ 840 (851)
T KOG3723|consen 804 KAFEIFTA-------DKTYILKAKDEKNAEEWLQCLNIAVAHAK 840 (851)
T ss_pred hhhheeec-------CceEEeecccccCHHHHHHHHHHHHHHHH
Confidence 99999322 24688999999999999999997766433
No 161
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=70.02 E-value=1.1e+02 Score=29.71 Aligned_cols=70 Identities=13% Similarity=0.259 Sum_probs=48.9
Q ss_pred EeeeeCCCccceEEEEEEecCCceEEEEEEecCCcc----cceeeeeEecCCcceEEEE--e-----cCceEEEEEcCCe
Q psy3725 508 TTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKT----RHKRLHEVILPTLAQCIHI--F-----SEGRLCVGYQSGF 576 (760)
Q Consensus 508 ~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~----~fkk~kE~~lP~~~~sl~~--~-----~~~~LcVG~~~gF 576 (760)
++|+.++.. +||.+|.. .=+|+++.+..... .-..++.+.+..++.+|+- + .+ -|.||+....
T Consensus 2 aiGkfDG~~--pcL~~aT~---~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D-~LliGt~t~l 75 (136)
T PF14781_consen 2 AIGKFDGVH--PCLACATT---GGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRD-CLLIGTQTSL 75 (136)
T ss_pred eEEEeCCCc--eeEEEEec---CCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcC-EEEEeccceE
Confidence 578888643 36666653 23899998653321 2345677888899888843 3 24 9999999999
Q ss_pred EEEEecC
Q psy3725 577 SIYKFSQ 583 (760)
Q Consensus 577 ~ivdl~~ 583 (760)
..||++.
T Consensus 76 laYDV~~ 82 (136)
T PF14781_consen 76 LAYDVEN 82 (136)
T ss_pred EEEEccc
Confidence 9999974
No 162
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.01 E-value=40 Score=28.86 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=43.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 87 IQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 87 i~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
|..-+.+|=|....|+.|-++.++.+++....++|.+|-+.|+.|-..-+.|++
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777777788899999999999999999999999999988766555554
No 163
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=69.80 E-value=22 Score=39.70 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=42.4
Q ss_pred HhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---------HHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 76 LLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEI---------CDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 76 ~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l---------~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
.++++++|++...||+.+..|- +.|++.+.+||-- -..++.-+.|..|+|.+++|+++++
T Consensus 308 Kle~e~~l~a~qeakek~~KEA-qareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekkreleql~ 376 (442)
T PF06637_consen 308 KLEAEQGLQASQEAKEKAGKEA-QAREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKKRELEQLK 376 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999888888887774 3445555554432 3356777788888888888888766
No 164
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=69.19 E-value=41 Score=29.54 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 81 SSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 81 sal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
+-.+.-|..=+.++=|+...|+.|..+..+.+.+....++|.+|.++|+.|-..-+.|++
T Consensus 11 ~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444577888888899999999999999999999999999999999876665554
No 165
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=69.05 E-value=22 Score=37.68 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 93 ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
++.|++..+.+..+++.++.+.+.+...+..|+...++.++..+
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555555555555555544444433
No 166
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=68.81 E-value=14 Score=40.68 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
.+.+|+.++..+...+.++|+++|+...+|..|++.++.|.++++
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666667777777777777777776666666543
No 167
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=68.62 E-value=20 Score=39.37 Aligned_cols=94 Identities=20% Similarity=0.132 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhhHH---------HHHHHHHHH
Q psy3725 20 ARSYLQALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQS---------SLNSEIQAK 90 (760)
Q Consensus 20 ar~ylq~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~lqs---------al~~Ei~ak 90 (760)
|---||+=..|+||-=|.||+-+- |.-.+.- -|+.|.+|. +-+-=+++|
T Consensus 69 a~~llq~kirk~~e~~eglr~i~e---------s~~e~q~-------------e~~qL~~qnqkL~nqL~~~~~vf~k~k 126 (401)
T PF06785_consen 69 AGQLLQTKIRKITEKDEGLRKIRE---------SVEERQQ-------------ESEQLQSQNQKLKNQLFHVREVFMKTK 126 (401)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHH---------HHHHHHH-------------HHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 445789999999999999997532 2111111 122222221 111123333
Q ss_pred Hhh--HHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 91 TQI--SEEL-SKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 91 q~i--~eeL-~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
... -|+| .+.+++|..+|-+|++...+..|..+|...|..|+.|.
T Consensus 127 ~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 127 GDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 222 2554 89999999999999999999999999999999999774
No 168
>KOG2096|consensus
Probab=68.43 E-value=2e+02 Score=31.98 Aligned_cols=40 Identities=25% Similarity=0.515 Sum_probs=34.4
Q ss_pred CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCc
Q psy3725 453 GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEV 493 (760)
Q Consensus 453 ~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~ 493 (760)
+..+.|+-++.-.+-..|+.+|| +|.+++++++.+...+.
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~-Dr~Ir~w~~~DF~~~eH 123 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISG-DRSIRLWDVRDFENKEH 123 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeC-CceEEEEecchhhhhhh
Confidence 35678999999999999999999 79999999998876543
No 169
>KOG0977|consensus
Probab=68.11 E-value=62 Score=38.31 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=26.5
Q ss_pred hhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHhc
Q psy3725 7 KAGQEFRVSDEKDARSYLQALTTKTTQELEYLKHA 41 (760)
Q Consensus 7 ~~~i~qwv~dek~ar~ylq~la~k~~~ele~lr~~ 41 (760)
|+..-.=|.|-..-|.-++.=-+|+.+|++.||.-
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~ 128 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKELRKK 128 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444445566667888999999999999999974
No 170
>KOG3532|consensus
Probab=68.04 E-value=0.88 Score=53.48 Aligned_cols=52 Identities=6% Similarity=-0.051 Sum_probs=44.0
Q ss_pred CCCCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCC
Q psy3725 205 DRSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPP 258 (760)
Q Consensus 205 ~~~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~ 258 (760)
.+..+-|+|....|..||||..|.+-.| .+.+-.|--|.|+||..|.++-.+
T Consensus 67 q~~~N~~r~~~t~~~~~t~~~~~~~~~~--~~~AS~c~s~~~V~h~lfqE~k~a 118 (1051)
T KOG3532|consen 67 QPPINQFRPAQIPEELRTFLKSGEDGQG--ISKASSCNSISLVLHMLFQEHKDT 118 (1051)
T ss_pred CCchhhcChhcCcccccccccccccchh--hHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456779999999999999999999776 367889999999999999886543
No 171
>KOG0161|consensus
Probab=67.90 E-value=68 Score=43.46 Aligned_cols=61 Identities=20% Similarity=0.197 Sum_probs=45.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 72 EKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 72 ~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
--.+++.||..|++|-.-.....|++.+.++....+|.+|++.+.++.+..++...+..+.
T Consensus 871 ~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~ 931 (1930)
T KOG0161|consen 871 LLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKK 931 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888888888888888888888888888887777776666554444443
No 172
>KOG0646|consensus
Probab=67.63 E-value=2.4e+02 Score=32.63 Aligned_cols=194 Identities=13% Similarity=0.110 Sum_probs=106.8
Q ss_pred CCeeEEEEecCCC-eEEEEEc-C------CCCCCceEEcC--CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCC
Q psy3725 422 TKKIYQMDYIPKE-QLLVVLA-G------KQRYVQIARVG--DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGD 491 (760)
Q Consensus 422 ~~~i~Caa~~~~~-rllvGTe-~------l~~~~~l~rv~--~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~ 491 (760)
+..++|.+....+ .|+-||+ + +... .+..+. +=.+|+-|-..-+ +.+++=+||+..|+++.+..|...
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSG-ILLNVLSAHYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccc-cHHHHHHhhccceeEEEEeCC-CcEEEecCCCccEEEEEEEeeccc
Confidence 5567777754444 4777778 2 3333 333333 2346777766644 556666789999999999877654
Q ss_pred Cc----ce-eecCc-ccceEEEEeeeeCCCccceEEE-EEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEec
Q psy3725 492 EV----EW-VKIPE-TKGCLSFTTGPLTHTRTQHCLA-LAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFS 564 (760)
Q Consensus 492 ~~----~~-~kl~e-tKgc~~f~~g~~~~~~~~~~Lc-VAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~ 564 (760)
+. .+ .++.+ +...+-+.+|.- +. ..+|. +.--+ ++.+|.+..+ ..+.-+..|.++.++++-+
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~G--g~-~~rl~TaS~D~----t~k~wdlS~g----~LLlti~fp~si~av~lDp 227 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSG--GT-NARLYTASEDR----TIKLWDLSLG----VLLLTITFPSSIKAVALDP 227 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCC--Cc-cceEEEecCCc----eEEEEEeccc----eeeEEEecCCcceeEEEcc
Confidence 32 22 33332 122333443321 11 12333 33333 7889998776 3567799999999999876
Q ss_pred Cc-eEEEEEcCC-eEEEEecCCCCcee--e----cCCCCC-cccccccCCCCceEEEEeC-CCeEEEEecceEEE
Q psy3725 565 EG-RLCVGYQSG-FSIYKFSQDNRPIP--L----IHQDNP-LVSLLTYSPVDALLAIELP-RGEFLLVFHSLAAY 629 (760)
Q Consensus 565 ~~-~LcVG~~~g-F~ivdl~~~~~~~~--L----l~~~d~-sl~f~~~~~~~pl~i~~l~-~~EfLLcy~~~gvf 629 (760)
.+ .+.||...| +.+.++.+ ...++ + .+.+.. -..|....+-.++..+.++ ++.+||-=|+-|.+
T Consensus 228 ae~~~yiGt~~G~I~~~~~~~-~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~V 301 (476)
T KOG0646|consen 228 AERVVYIGTEEGKIFQNLLFK-LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKV 301 (476)
T ss_pred cccEEEecCCcceEEeeehhc-CCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCE
Confidence 44 777888877 55556642 22111 1 111111 1123333333466555553 55666655544443
No 173
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=67.60 E-value=15 Score=33.98 Aligned_cols=35 Identities=6% Similarity=0.148 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHH
Q psy3725 97 LSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQ 131 (760)
Q Consensus 97 L~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e 131 (760)
..+.+....++++++++.+++|.+|.+|++.|+..
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 34445555667788888889999999999988764
No 174
>KOG2106|consensus
Probab=67.46 E-value=1.2e+02 Score=35.51 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=45.4
Q ss_pred EEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEcCCeEEEEe
Q psy3725 520 CLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSGFSIYKF 581 (760)
Q Consensus 520 ~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~gF~ivdl 581 (760)
+|+|+.+- | .|++|.+.+++..+.++..... .++..|.|..|++..++-.-+|+++=-
T Consensus 461 ~lAvgs~d-~--~iyiy~Vs~~g~~y~r~~k~~g-s~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 461 FLAVGSHD-N--HIYIYRVSANGRKYSRVGKCSG-SPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred EEEEecCC-C--eEEEEEECCCCcEEEEeeeecC-ceeEEeeecCCCceEEeccCceEEEEE
Confidence 66666552 3 5778888888877888888887 888899999987888888888888654
No 175
>KOG2055|consensus
Probab=67.30 E-value=1.2e+02 Score=35.08 Aligned_cols=176 Identities=13% Similarity=0.260 Sum_probs=88.5
Q ss_pred CCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEE
Q psy3725 456 KKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIIL 535 (760)
Q Consensus 456 k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ 535 (760)
+.+.-.+|-+.-+ +|+|.|++.+++++.... +--+...|++..-.-..|. ..+. .|. +. ...-.|++
T Consensus 304 ~~~e~FeVShd~~-fia~~G~~G~I~lLhakT--~eli~s~KieG~v~~~~fs----Sdsk---~l~-~~--~~~GeV~v 370 (514)
T KOG2055|consen 304 KSMERFEVSHDSN-FIAIAGNNGHIHLLHAKT--KELITSFKIEGVVSDFTFS----SDSK---ELL-AS--GGTGEVYV 370 (514)
T ss_pred chhheeEecCCCC-eEEEcccCceEEeehhhh--hhhhheeeeccEEeeEEEe----cCCc---EEE-EE--cCCceEEE
Confidence 4677788888777 678899999998876532 1112346666442222333 2223 222 22 11238999
Q ss_pred EEecCCcccceeeeeEecCCcceEEEEe--cCc-eEEEEEcCCeE-EEEec---CCCCceeecCC-----CCCccccccc
Q psy3725 536 YEITRTKTRHKRLHEVILPTLAQCIHIF--SEG-RLCVGYQSGFS-IYKFS---QDNRPIPLIHQ-----DNPLVSLLTY 603 (760)
Q Consensus 536 ye~~~~k~~fkk~kE~~lP~~~~sl~~~--~~~-~LcVG~~~gF~-ivdl~---~~~~~~~Ll~~-----~d~sl~f~~~ 603 (760)
|.++.++-. .-|.-.+.+...+++ .++ .|.+|++.|+. |||.+ .+..+.|+-.. .-++|.|...
T Consensus 371 ~nl~~~~~~----~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 371 WNLRQNSCL----HRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred EecCCcceE----EEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 998765422 234444444443333 222 89999999953 55543 12233343221 1233444322
Q ss_pred CCCCceEEEEeCCCeE-EEEecceEEEEcCCCCcccccceecCCCCcEEEeeC
Q psy3725 604 SPVDALLAIELPRGEF-LLVFHSLAAYVDSQGHKSREKEIMYPALPTGASYMD 655 (760)
Q Consensus 604 ~~~~pl~i~~l~~~Ef-LLcy~~~gvfVD~~G~rsR~~~I~W~~~P~~~ay~~ 655 (760)
..+=++|- +..++-+ |.=+-.+.||-| +|.+...+ +.++.++|..
T Consensus 447 ~qiLAiaS-~~~knalrLVHvPS~TVFsN---fP~~n~~v---g~vtc~aFSP 492 (514)
T KOG2055|consen 447 AQILAIAS-RVKKNALRLVHVPSCTVFSN---FPTSNTKV---GHVTCMAFSP 492 (514)
T ss_pred hhhhhhhh-hccccceEEEeccceeeecc---CCCCCCcc---cceEEEEecC
Confidence 22222211 1123444 334567788866 45544333 2455666654
No 176
>KOG0278|consensus
Probab=66.32 E-value=1.6e+02 Score=31.77 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=88.8
Q ss_pred CCeEEEEEc-------CCCCC-CceEEcC-CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccc
Q psy3725 433 KEQLLVVLA-------GKQRY-VQIARVG-DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKG 503 (760)
Q Consensus 433 ~~rllvGTe-------~l~~~-~~l~rv~-~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKg 503 (760)
.++|+-|.. ++++. ..+.-+. +...|..+.-.-+.+.+|.-++ ++.||+.+...-.. .+.|.-...
T Consensus 112 s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad-d~tVRLWD~rTgt~----v~sL~~~s~ 186 (334)
T KOG0278|consen 112 SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD-DKTVRLWDHRTGTE----VQSLEFNSP 186 (334)
T ss_pred chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc-CCceEEEEeccCcE----EEEEecCCC
Confidence 345777755 23332 3444444 3345666555566666666566 68999998743211 122222222
Q ss_pred eEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEcCCeEEEEec-
Q psy3725 504 CLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSGFSIYKFS- 582 (760)
Q Consensus 504 c~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~gF~ivdl~- 582 (760)
+...- ....|. +|.+|-.+ .|..|... .|..+|++.+|..+.+-+.-++--+.|.-...|.++-.+
T Consensus 187 VtSlE--vs~dG~---ilTia~gs----sV~Fwdak----sf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy 253 (334)
T KOG0278|consen 187 VTSLE--VSQDGR---ILTIAYGS----SVKFWDAK----SFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDY 253 (334)
T ss_pred Cccee--eccCCC---EEEEecCc----eeEEeccc----cccceeeccCccccccccccCCCceEEecCcceEEEEEec
Confidence 22222 223355 78888876 89899864 388999999999998877776534445444566666553
Q ss_pred CCCCceeecCCCCCcccccccCCCCceEEEEeC
Q psy3725 583 QDNRPIPLIHQDNPLVSLLTYSPVDALLAIELP 615 (760)
Q Consensus 583 ~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~ 615 (760)
.++.-.... ..+.-.|+..++.+
T Consensus 254 ~TgeEi~~~----------nkgh~gpVhcVrFS 276 (334)
T KOG0278|consen 254 NTGEEIGSY----------NKGHFGPVHCVRFS 276 (334)
T ss_pred cCCceeeec----------ccCCCCceEEEEEC
Confidence 122222221 12345677777764
No 177
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=66.20 E-value=25 Score=32.71 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=30.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 91 TQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 91 q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
..|-+.+.++-.....+-.++.+.+++..+|.+|-..|+-|.+.|+.++.
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555566666666666666666666666666666665444
No 178
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=66.18 E-value=26 Score=32.90 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=31.7
Q ss_pred cccchhhHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHH
Q psy3725 63 WRDRRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQ 131 (760)
Q Consensus 63 w~~rr~~k~~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e 131 (760)
++.=|..=+-..=+|..|..|... +....+++.++..+.+++++.++++.+|++.+++|
T Consensus 58 ~klfrLaQl~ieYLl~~q~~L~~~----------~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 58 LKLFRLAQLSIEYLLHCQEYLSSQ----------LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444454444444455555555554 34444444555555555666666666666666555
No 179
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=66.05 E-value=10 Score=44.23 Aligned_cols=42 Identities=19% Similarity=0.354 Sum_probs=33.2
Q ss_pred cCCCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 352 ATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 352 a~~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
.+.++-|++|-+.+. + +..+.+.|.|..+|+.|+.+|+.+..
T Consensus 449 ~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 449 YTGSNAAHVFAVAFK----T--GRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred hhCCCCCcEEEEEec----C--CcEEEEecCCchhHHHHHHHHHHhcC
Confidence 445578999999533 3 35789999999999999999987654
No 180
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.92 E-value=29 Score=38.24 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 94 SEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 94 ~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
++||.+.|+.+.....++....+...+++.|++.++..+++
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~ 243 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIED 243 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777666666666666666666666666555555544
No 181
>KOG4571|consensus
Probab=65.85 E-value=12 Score=40.42 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 100 TRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 100 ~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
-|++-.+++.++++.+++|++|++....+.+|+..+|.
T Consensus 246 kRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 246 KRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788999999999999999999999999988773
No 182
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=65.84 E-value=88 Score=31.73 Aligned_cols=71 Identities=23% Similarity=0.282 Sum_probs=51.3
Q ss_pred hhhHHHHHHHhhhHHHHHHH-------HHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 67 RSQKLEKMELLNLQSSLNSE-------IQAKT----QISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 67 r~~k~~~~~~l~lqsal~~E-------i~akq----~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
.+...|+...++-|..|+.| ++||. .+..|-.+..+..-.+|.|+++.|.+..+=..+=..+...-.++
T Consensus 88 ~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAaqL 167 (178)
T PF14073_consen 88 ESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQDKAAQL 167 (178)
T ss_pred HHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777766 56653 45567788888889999999999999888666665555555555
Q ss_pred Hh
Q psy3725 136 QS 137 (760)
Q Consensus 136 ~~ 137 (760)
|.
T Consensus 168 Qt 169 (178)
T PF14073_consen 168 QT 169 (178)
T ss_pred Hh
Confidence 53
No 183
>KOG0995|consensus
Probab=65.39 E-value=74 Score=37.57 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=46.1
Q ss_pred HHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 75 ELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 75 ~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
++-..-++.+.--.-|..+++.++|.++..-+++++-+..++.+..|..|++.+..|+|-+|
T Consensus 253 e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq 314 (581)
T KOG0995|consen 253 EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQ 314 (581)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444456688888999999888988888888888888888888877777766
No 184
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=65.37 E-value=44 Score=31.70 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=45.8
Q ss_pred HHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----------------------------HHHHHHHHhHHHHHHHH
Q psy3725 75 ELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQ-----------------------------KEICDFRLKMESVSMDL 125 (760)
Q Consensus 75 ~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e-----------------------------~~l~e~e~~~~~l~~e~ 125 (760)
...+||+.|++=|..|+.|.-+|+-+..++..+| .++.-.|.|.+.|....
T Consensus 14 q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe 93 (119)
T COG1382 14 QLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQE 93 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999988888777766554 22333556666666666
Q ss_pred hhhHHHHHHHHhhh
Q psy3725 126 RRKDSQLKELQSRL 139 (760)
Q Consensus 126 ~~l~~e~~~l~~~~ 139 (760)
++++++++++++.+
T Consensus 94 ~~l~e~l~eLq~~i 107 (119)
T COG1382 94 EKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766543
No 185
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=65.31 E-value=32 Score=35.79 Aligned_cols=63 Identities=16% Similarity=0.308 Sum_probs=40.1
Q ss_pred HHhhhHHHHHHHHHHHHh-hH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 75 ELLNLQSSLNSEIQAKTQ-IS--EELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 75 ~~l~lqsal~~Ei~akq~-i~--eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
-+-||.+|| +||-.. ++ -|+.-+|..+....-||+|.-+.+.+|..|++.|.-+.++++.|++
T Consensus 108 vrkEl~nAl---vRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk 173 (290)
T COG4026 108 VRKELKNAL---VRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLK 173 (290)
T ss_pred HHHHHHHHH---HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666 444322 22 3555667777777777777777777777777777777777665443
No 186
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=64.97 E-value=58 Score=30.51 Aligned_cols=83 Identities=14% Similarity=0.318 Sum_probs=49.2
Q ss_pred cceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCCCcce
Q psy3725 297 KGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNH 376 (760)
Q Consensus 297 kgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~~~~~ 376 (760)
+.-..+|.+|=..-|++.-.++.-++ -.-.-.+.| ...+|.....+| ..++-|.|+-..+ ..
T Consensus 26 qe~~eRyLvLFp~~LlilS~s~r~sG---f~yqGkLPL--~~i~v~~lEd~e-------~~~~aFeI~G~li------~~ 87 (111)
T cd01225 26 EEKRERYLVLFPNVLLMLSASPRMSG---FIYQGKLPL--TGIIVTRLEDTE-------ALKNAFEISGPLI------ER 87 (111)
T ss_pred cccceeEEEEcCceEEEEEcCCCccc---eEEeeeecc--cccEEechHhcc-------CccceEEEeccCc------Cc
Confidence 33445667776666777665442221 111122333 223343322222 5589999973332 45
Q ss_pred EEEeeCCHHHHHHHHHHHHHH
Q psy3725 377 TLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 377 l~LlA~S~~ek~kWv~~L~~~ 397 (760)
+.+++.|.+|.++|+++|+.+
T Consensus 88 i~v~C~~~~e~~~Wl~hL~~~ 108 (111)
T cd01225 88 IVVVCNNPQDAQEWVELLNAN 108 (111)
T ss_pred EEEEeCCHHHHHHHHHHHHhh
Confidence 899999999999999999875
No 187
>KOG2055|consensus
Probab=64.96 E-value=2.7e+02 Score=32.29 Aligned_cols=146 Identities=14% Similarity=0.239 Sum_probs=81.6
Q ss_pred CCeeEEEEecCCCe-EEEEEcCCCCCCceEEcCCC------------CCeeEEEEecCCCeEEEEECCCCeEEEEECCCc
Q psy3725 422 TKKIYQMDYIPKEQ-LLVVLAGKQRYVQIARVGDT------------KKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRAL 488 (760)
Q Consensus 422 ~~~i~Caa~~~~~r-llvGTe~l~~~~~l~rv~~~------------k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L 488 (760)
...|+|.- |.... ||+ |-|+++...+.+|.+. -+|....+.+.-.-.|+-+|+.+.+|.|+|..-
T Consensus 213 ~~~I~sv~-FHp~~plll-vaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQ-FHPTAPLLL-VAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEE-ecCCCceEE-EecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 56677775 56655 444 3344333344444332 346666666766657888898899999999331
Q ss_pred cCCCcce-eecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCce
Q psy3725 489 DGDEVEW-VKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGR 567 (760)
Q Consensus 489 ~~~~~~~-~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~ 567 (760)
.-..+.+ .-+ +-++-+.|.+.-+.+ +|+++-+ .-.|..... .++ ..+--|-+++.+..+.|+.+++
T Consensus 291 k~~k~~~~~g~-e~~~~e~FeVShd~~-----fia~~G~---~G~I~lLha-kT~---eli~s~KieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 291 KVTKLKPPYGV-EEKSMERFEVSHDSN-----FIAIAGN---NGHIHLLHA-KTK---ELITSFKIEGVVSDFTFSSDSK 357 (514)
T ss_pred ccccccCCCCc-ccchhheeEecCCCC-----eEEEccc---CceEEeehh-hhh---hhhheeeeccEEeeEEEecCCc
Confidence 1111111 111 235677788765543 4554432 123333221 122 2244578899999999998876
Q ss_pred EEEEE--cCCeEEEEec
Q psy3725 568 LCVGY--QSGFSIYKFS 582 (760)
Q Consensus 568 LcVG~--~~gF~ivdl~ 582 (760)
..+.+ ...-.++||.
T Consensus 358 ~l~~~~~~GeV~v~nl~ 374 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLR 374 (514)
T ss_pred EEEEEcCCceEEEEecC
Confidence 55555 4345555664
No 188
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=64.53 E-value=78 Score=34.98 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
+||...|.++...+.++.+.++...+|+.|++.++.++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544444444444444444443333333
No 189
>KOG1445|consensus
Probab=64.00 E-value=58 Score=38.82 Aligned_cols=129 Identities=19% Similarity=0.238 Sum_probs=60.4
Q ss_pred ecCCCeEEEEEc-C-----------CCCC-CceEEc--CCCCCeeEEEEecCC-CeEEEEECCCCeEEEEECCCccCCCc
Q psy3725 430 YIPKEQLLVVLA-G-----------KQRY-VQIARV--GDTKKIYQMDYIPEE-QLLVVLAGKQRYVRLVPVRALDGDEV 493 (760)
Q Consensus 430 ~~~~~rllvGTe-~-----------l~~~-~~l~rv--~~~k~V~QI~Vi~e~-~lLlvLsgk~r~L~l~~L~~L~~~~~ 493 (760)
+||.+||+|||| | +.++ .++..+ ++..+|+-|..-|=. ++|++-+ -+-.+.+.+|..-..
T Consensus 637 PFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as-yd~Ti~lWDl~~~~~--- 712 (1012)
T KOG1445|consen 637 PFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS-YDSTIELWDLANAKL--- 712 (1012)
T ss_pred CCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh-ccceeeeeehhhhhh---
Confidence 577889999999 2 2222 222222 244667766665533 3333322 245677777644321
Q ss_pred ceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecC--CcceEEEEecCc--eE
Q psy3725 494 EWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILP--TLAQCIHIFSEG--RL 568 (760)
Q Consensus 494 ~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP--~~~~sl~~~~~~--~L 568 (760)
.-++.. +.+-.-|+..-+ |+ .+.-..| . -+|.+|+..... ..+.|=.-| ..---|.|.=+| -|
T Consensus 713 -~~~l~gHtdqIf~~AWSpd--Gr---~~AtVcK-D--g~~rVy~Prs~e---~pv~Eg~gpvgtRgARi~wacdgr~vi 780 (1012)
T KOG1445|consen 713 -YSRLVGHTDQIFGIAWSPD--GR---RIATVCK-D--GTLRVYEPRSRE---QPVYEGKGPVGTRGARILWACDGRIVI 780 (1012)
T ss_pred -hheeccCcCceeEEEECCC--Cc---ceeeeec-C--ceEEEeCCCCCC---CccccCCCCccCcceeEEEEecCcEEE
Confidence 112221 222222444333 33 2333333 2 278889864322 223332222 222236666565 46
Q ss_pred EEEEcC
Q psy3725 569 CVGYQS 574 (760)
Q Consensus 569 cVG~~~ 574 (760)
|+|+.+
T Consensus 781 v~Gfdk 786 (1012)
T KOG1445|consen 781 VVGFDK 786 (1012)
T ss_pred Eecccc
Confidence 667765
No 190
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=63.96 E-value=2.3e+02 Score=31.17 Aligned_cols=162 Identities=15% Similarity=0.188 Sum_probs=94.5
Q ss_pred EEEEEEecC-CceEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCc-eEEEEEc--CCeEEEEecCCCCceeecC--
Q psy3725 520 CLALAVKRQ-NSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEG-RLCVGYQ--SGFSIYKFSQDNRPIPLIH-- 592 (760)
Q Consensus 520 ~LcVAvKr~-~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~-~LcVG~~--~gF~ivdl~~~~~~~~Ll~-- 592 (760)
+|.++.... ..-.|..|.+......+..+.++. ....+..|++.+++ .|.|+.- ....++++..++......+
T Consensus 50 ~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~ 129 (345)
T PF10282_consen 50 RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTV 129 (345)
T ss_dssp EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEE
T ss_pred EEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeec
Confidence 566665421 355788888776534466777776 45566678887766 4555432 2377888874444333211
Q ss_pred -CCCCcccccccCCCCceEEEEeCCCeEEEEe----cceEEE-EcCCC-Cccccc--ceecCCCCcEEEeeCC--eEEEE
Q psy3725 593 -QDNPLVSLLTYSPVDALLAIELPRGEFLLVF----HSLAAY-VDSQG-HKSREK--EIMYPALPTGASYMDG--QLLIF 661 (760)
Q Consensus 593 -~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy----~~~gvf-VD~~G-~rsR~~--~I~W~~~P~~~ay~~P--YLlvf 661 (760)
...+......+....|.++.--+++.+|++- |..-+| +|..+ ...... .+.....|-.++|+.- |+++.
T Consensus 130 ~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~ 209 (345)
T PF10282_consen 130 RHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVV 209 (345)
T ss_dssp ESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEE
T ss_pred ccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEe
Confidence 0000000112335677777776677777663 555566 44433 333322 3566688999999754 88888
Q ss_pred e--CCeeEEEECc--CC--cEEEEEe
Q psy3725 662 S--ETHVDVFNAE--SG--DWLQTVN 681 (760)
Q Consensus 662 ~--~~~IEVr~i~--tg--~lVQtI~ 681 (760)
. .+.|.++++. +| +.+|++.
T Consensus 210 ~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 210 NELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp ETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred cCCCCcEEEEeecccCCceeEEEEee
Confidence 7 5789999998 55 4566664
No 191
>KOG1853|consensus
Probab=63.80 E-value=20 Score=37.94 Aligned_cols=26 Identities=4% Similarity=0.133 Sum_probs=13.1
Q ss_pred HHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 109 KEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 109 ~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
.+|+++|.||+.|+.+..+|+-|.+.
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~ 77 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQER 77 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444433
No 192
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=63.64 E-value=1.2e+02 Score=31.32 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhccC
Q psy3725 101 RSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLESG 142 (760)
Q Consensus 101 ~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~~g 142 (760)
=.....++.|.+|.|.+++.|..+|..++-.++-||.|...+
T Consensus 128 ~eel~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs~~~ 169 (205)
T PF12240_consen 128 EEELHMANRKCQEMENRIKALHAQIAEKDAMIKVLQQRSRKD 169 (205)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 456677888999999999999999999999999998766654
No 193
>KOG4424|consensus
Probab=63.13 E-value=8.8 Score=44.93 Aligned_cols=85 Identities=15% Similarity=0.246 Sum_probs=52.8
Q ss_pred ccceEEEEEEEeC---cEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCC
Q psy3725 296 KKGWVRQFVVVCD---FKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPG 372 (760)
Q Consensus 296 kkgw~r~~~~l~~---~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~ 372 (760)
..+|+.+|+++=- ..+..|+-+.|-..+ -.|.|+.=++.+ .| -..+.|.+-+|+++-+++
T Consensus 510 ~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a~------~~iPl~~~~v~~-----pe--~~~~~D~~~~~k~~~s~~---- 572 (623)
T KOG4424|consen 510 GKTGILAWSVVPKSDPLVDYSYGSPQDVRAQ------ATIPLPGVEVTI-----PE--FVRREDLFHVFKLVQSHL---- 572 (623)
T ss_pred CccceeeeeeccCCCCccccccCCccccccc------cccccCccccCC-----Cc--ccccchhcchhhhhhhcc----
Confidence 3689999999843 335666655542221 122222211111 11 112448888999987765
Q ss_pred CcceEEEeeCCHHHHHHHHHHHHHHHHH
Q psy3725 373 TKNHTLMLADSDTEKTKWVVALSELHRI 400 (760)
Q Consensus 373 ~~~~l~LlA~S~~ek~kWv~~L~~~~~~ 400 (760)
..+|-|++++-+++|++.|.-+...
T Consensus 573 ---~~~~~a~~~q~qq~wl~~l~~A~~~ 597 (623)
T KOG4424|consen 573 ---SWHLAADDEQLQQRWLEVLLLAVSG 597 (623)
T ss_pred ---eeeeccCCHHHHHHHHHHHHhhhcc
Confidence 3478899999999999999877653
No 194
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=63.00 E-value=1.9e+02 Score=29.75 Aligned_cols=205 Identities=11% Similarity=0.121 Sum_probs=101.7
Q ss_pred CCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEE
Q psy3725 456 KKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIIL 535 (760)
Q Consensus 456 k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ 535 (760)
..+..+.+.++.+.+++-++.+..|+++++..... ...++.....+.++ ....+. +++++... ...+..
T Consensus 73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~--~~~dg~---~l~~~~~~--~~~~~~ 141 (300)
T TIGR03866 73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKV----LAEIPVGVEPEGMA--VSPDGK---IVVNTSET--TNMAHF 141 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE----EeEeeCCCCcceEE--ECCCCC---EEEEEecC--CCeEEE
Confidence 44677888888887766655567899999854211 11111100111111 122333 45544421 223455
Q ss_pred EEecCCcccceeeeeEecCCcceEEEEecCce-EEEEEc--CCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEE
Q psy3725 536 YEITRTKTRHKRLHEVILPTLAQCIHIFSEGR-LCVGYQ--SGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAI 612 (760)
Q Consensus 536 ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~-LcVG~~--~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~ 612 (760)
|.... .+....+..+..+.++.|..+++ |.++.. ....++|+. ++....-++...+. .......|..+.
T Consensus 142 ~d~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~-~~~~~~~~~~~~~~---~~~~~~~~~~i~ 213 (300)
T TIGR03866 142 IDTKT----YEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVA-TRKVIKKITFEIPG---VHPEAVQPVGIK 213 (300)
T ss_pred EeCCC----CeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcC-cceeeeeeeecccc---cccccCCccceE
Confidence 55432 22334455666777889987764 556653 347788886 33322111100000 000112232222
Q ss_pred EeCCCeEEEE--e--cceEEEEcCC-CCcccccceecCCCCcEEEeeC--CeEEEEe--CCeeEEEECcCCcEEEEEec
Q psy3725 613 ELPRGEFLLV--F--HSLAAYVDSQ-GHKSREKEIMYPALPTGASYMD--GQLLIFS--ETHVDVFNAESGDWLQTVNI 682 (760)
Q Consensus 613 ~l~~~EfLLc--y--~~~gvfVD~~-G~rsR~~~I~W~~~P~~~ay~~--PYLlvf~--~~~IEVr~i~tg~lVQtI~~ 682 (760)
--+++.++++ . ++..+| |.. |+..+. +.=...|..++|.. .+|++-. .+.|-|+++.+++.+++|..
T Consensus 214 ~s~dg~~~~~~~~~~~~i~v~-d~~~~~~~~~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 214 LTKDGKTAFVALGPANRVAVV-DAKTYEVLDY--LLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEE-ECCCCcEEEE--EEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 1234444322 2 122232 543 332221 21134566777753 3777643 67899999999999999965
No 195
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=62.76 E-value=1.1e+02 Score=31.28 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhc
Q psy3725 24 LQALTTKTTQELEYLKHA 41 (760)
Q Consensus 24 lq~la~k~~~ele~lr~~ 41 (760)
+.-...++.+|++.||..
T Consensus 34 ~ee~na~L~~e~~~L~~q 51 (193)
T PF14662_consen 34 AEEGNAQLAEEITDLRKQ 51 (193)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344566777778877764
No 196
>KOG1036|consensus
Probab=62.49 E-value=85 Score=34.41 Aligned_cols=42 Identities=14% Similarity=0.295 Sum_probs=26.3
Q ss_pred EEEEEEecCCcccceeeeeEecCCcceEEEEecCc-eEEEEEcCCe
Q psy3725 532 QIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG-RLCVGYQSGF 576 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~-~LcVG~~~gF 576 (760)
.|.+|.+.. +.+++.+..+ +..+.+|+|..+| .|.||+.--|
T Consensus 255 ~V~~Wd~~~-rKrl~q~~~~--~~SI~slsfs~dG~~LAia~sy~y 297 (323)
T KOG1036|consen 255 IVNIWDLFN-RKRLKQLAKY--ETSISSLSFSMDGSLLAIASSYQY 297 (323)
T ss_pred eEEEccCcc-hhhhhhccCC--CCceEEEEeccCCCeEEEEechhh
Confidence 467788643 3233333333 5778889999775 7888876533
No 197
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=62.46 E-value=83 Score=34.75 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=6.6
Q ss_pred HHHHHHHhHHHHHHHHhh
Q psy3725 110 EICDFRLKMESVSMDLRR 127 (760)
Q Consensus 110 ~l~e~e~~~~~l~~e~~~ 127 (760)
++.+..++..++..+|..
T Consensus 240 ~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 240 KIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 198
>KOG0279|consensus
Probab=62.38 E-value=87 Score=34.01 Aligned_cols=111 Identities=15% Similarity=0.185 Sum_probs=64.2
Q ss_pred EcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCc
Q psy3725 451 RVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNS 530 (760)
Q Consensus 451 rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~ 530 (760)
.++..+.|+-++|-|+-.+.+. .||+..+++.+|+.=.. .+.++..--.+.++.+. + .+-||+|.-.
T Consensus 188 ~~gh~~~v~t~~vSpDGslcas-Ggkdg~~~LwdL~~~k~----lysl~a~~~v~sl~fsp---n--rywL~~at~~--- 254 (315)
T KOG0279|consen 188 FIGHSGYVNTVTVSPDGSLCAS-GGKDGEAMLWDLNEGKN----LYSLEAFDIVNSLCFSP---N--RYWLCAATAT--- 254 (315)
T ss_pred cccccccEEEEEECCCCCEEec-CCCCceEEEEEccCCce----eEeccCCCeEeeEEecC---C--ceeEeeccCC---
Confidence 3667788999999999888776 78889999998832110 12222111122222211 1 2479999865
Q ss_pred eEEEEEEecCCcccceeeeeEecC----Cc--ceEEEEecCc-eEEEEEcCC
Q psy3725 531 SQIILYEITRTKTRHKRLHEVILP----TL--AQCIHIFSEG-RLCVGYQSG 575 (760)
Q Consensus 531 ~~Vl~ye~~~~k~~fkk~kE~~lP----~~--~~sl~~~~~~-~LcVG~~~g 575 (760)
.|.+|+.....--+..--|+.-| +. +.+++|+.+| .|.-|+..+
T Consensus 255 -sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 255 -SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred -ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 68999975433212111233323 22 3447888665 677777653
No 199
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=61.70 E-value=79 Score=34.11 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhH
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDLRRKD 129 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~ 129 (760)
+||....+.+...|++++|++.+..++...+..++
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555444444444333
No 200
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=60.58 E-value=15 Score=34.04 Aligned_cols=100 Identities=21% Similarity=0.358 Sum_probs=53.6
Q ss_pred ceeeeeecccccc-cccceEEEEEEEeCcE-----EEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCc--ccccC
Q psy3725 282 AYEGYVKVPKTGG-VKKGWVRQFVVVCDFK-----LFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESD--VIHAT 353 (760)
Q Consensus 282 ~~eG~vkvp~~~~-~kkgw~r~~~~l~~~k-----L~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sd--vi~a~ 353 (760)
.+.|++ .+.|+ .-+.|+|+|++|-+-- ++-|- + +-+.| +..+.| +.|+|--..+.+ ....-
T Consensus 3 k~sGyL--~k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~--e-kks~P----~e~~ql--dGyTvDy~~~~~~~~~~~~ 71 (117)
T cd01234 3 KHCGYL--YAIGKNVWKKWKKRFFVLVQVSQYTFAMCSYR--E-KKAEP----TEFIQL--DGYTVDYMPESDPDPNSEL 71 (117)
T ss_pred ceeEEE--EeccchhhhhhheeEEEEEchhHHHHHHHhhh--h-hcCCc----hhheee--cceEEeccCCCCCCccccc
Confidence 367887 44556 4578999999998632 22221 1 11222 223333 247774322211 11111
Q ss_pred CCccc-eeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 354 KKDIP-CIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 354 ~~dip-~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
.-+-+ ++|+.. .- +.++.+-.+.+.+|+-||.+|-.+..
T Consensus 72 ~~~gg~~ff~av-----ke--gd~~~fa~~de~~r~lwvqa~yratg 111 (117)
T cd01234 72 SLQGGRHFFNAV-----KE--GDELKFATDDENERHLWVQAMYRATG 111 (117)
T ss_pred ccccchhhhhee-----cc--CcEEEEeccchHHHHHHHHHHHHHcC
Confidence 11122 333331 11 36788888999999999999876643
No 201
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=60.30 E-value=61 Score=28.00 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=25.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 84 NSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 84 ~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
++=|..=+.++.|....+..|.++. ..+.+|..|.++|+.+.+..+.|++
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~-------~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELK-------EENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444455554444444333 5566666666666666655554443
No 202
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=60.15 E-value=1.6e+02 Score=28.08 Aligned_cols=49 Identities=27% Similarity=0.361 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q psy3725 78 NLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLR 126 (760)
Q Consensus 78 ~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~ 126 (760)
+.|...++|...-....++|+++|+.+-.++.++.+++...+....+++
T Consensus 42 ~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 42 EAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666655555666666666666666665555555554444443
No 203
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=60.05 E-value=98 Score=36.68 Aligned_cols=18 Identities=28% Similarity=0.189 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3725 22 SYLQALTTKTTQELEYLK 39 (760)
Q Consensus 22 ~ylq~la~k~~~ele~lr 39 (760)
+.||+---++-.|.+.|.
T Consensus 139 ~~lQ~qlE~~qkE~eeL~ 156 (546)
T PF07888_consen 139 QLLQNQLEECQKEKEELL 156 (546)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345554444444444443
No 204
>KOG0994|consensus
Probab=59.33 E-value=1.1e+02 Score=39.17 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 77 LNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 77 l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
-+.|.|++.--+--+..++-|.|++..-.++|..+..+-+|..+|..-|+.|+.+.
T Consensus 1580 ~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~ 1635 (1758)
T KOG0994|consen 1580 GEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKA 1635 (1758)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333333445566788888888888887777777777777777666554
No 205
>KOG4643|consensus
Probab=59.06 E-value=55 Score=41.01 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 78 NLQSSLNSEIQAKTQISEELSKTRSEL--IAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 78 ~lqsal~~Ei~akq~i~eeL~k~~~~~--~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
||...=+.=.--|+|+.|+|.+.|+.+ +++|++.-..+++...|..|....+.++++|.
T Consensus 268 elkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~ 328 (1195)
T KOG4643|consen 268 ELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELH 328 (1195)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 343333333446899999999999999 88888888888888888888887777777753
No 206
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=58.84 E-value=56 Score=33.68 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=46.5
Q ss_pred HHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 75 ELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 75 ~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
+.-+|+..|..--+-|+ .|..+++.+..++++|++.+..++.|....+++..|.+++..++.
T Consensus 70 e~~eL~k~L~~y~kdK~----~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 70 EVEELRKQLKNYEKDKQ----SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666665555555 467788888888888888888888888888888888888875544
No 207
>smart00338 BRLZ basic region leucin zipper.
Probab=58.31 E-value=37 Score=28.20 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 103 ELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 103 ~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
....+|.++++.+.+|.+|..+++.|..++..++.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888999999999999999999999887763
No 208
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=58.24 E-value=17 Score=40.05 Aligned_cols=52 Identities=10% Similarity=0.220 Sum_probs=35.4
Q ss_pred HHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 85 SEIQAKTQISEELSK-TRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 85 ~Ei~akq~i~eeL~k-~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+..+.|+..+|.+.+ .+.-++-+.++|.|.-+++.||++|+.+|++++++++
T Consensus 264 a~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~ 316 (320)
T TIGR01834 264 ALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLE 316 (320)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444432 2334566778888888899999999999999988865
No 209
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=57.94 E-value=79 Score=31.77 Aligned_cols=55 Identities=15% Similarity=0.322 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 81 SSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 81 sal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
..++.+=+-.+..+.++.+.+..+...+..+++.+.+.+.+..+.+.+.+++.++
T Consensus 95 ~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 95 EELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444444444444444444444444444433
No 210
>PRK09039 hypothetical protein; Validated
Probab=57.78 E-value=1e+02 Score=34.53 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=34.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 91 TQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 91 q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
+.++.|+...|+.+-++|..|.++|++.++....++.|+.+++.+
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788888888888888888888888888777777654
No 211
>KOG0650|consensus
Probab=57.71 E-value=89 Score=37.17 Aligned_cols=162 Identities=16% Similarity=0.270 Sum_probs=86.4
Q ss_pred EEcCCCCCeeEEEEecCCCeEEEEEC--CCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEec
Q psy3725 450 ARVGDTKKIYQMDYIPEEQLLVVLAG--KQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKR 527 (760)
Q Consensus 450 ~rv~~~k~V~QI~Vi~e~~lLlvLsg--k~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr 527 (760)
+.|-..|+|.||+---.-.-|.+.++ -++.|.+|.|+.-.. ...+.++||--.++. -+- ...+|+||.++
T Consensus 516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s----Q~PF~kskG~vq~v~-FHP---s~p~lfVaTq~ 587 (733)
T KOG0650|consen 516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS----QSPFRKSKGLVQRVK-FHP---SKPYLFVATQR 587 (733)
T ss_pred EEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc----cCchhhcCCceeEEE-ecC---CCceEEEEecc
Confidence 34556688999988887777777664 457888888853211 123344566443332 111 12489999988
Q ss_pred CCceEEEEEEecCCcccceeeeeEecCCcceEEEEec--CceEEEE-EcCCeEEEEecCCCCce-ee-cCCC-CCccccc
Q psy3725 528 QNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFS--EGRLCVG-YQSGFSIYKFSQDNRPI-PL-IHQD-NPLVSLL 601 (760)
Q Consensus 528 ~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~--~~~LcVG-~~~gF~ivdl~~~~~~~-~L-l~~~-d~sl~f~ 601 (760)
.|.+|.+.+... -|++.+. .--+++|++-. + .|++| +.+-+.-+||+-..++. .| ++.. -.+.+|
T Consensus 588 ----~vRiYdL~kqel-vKkL~tg--~kwiS~msihp~GD-nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~- 658 (733)
T KOG0650|consen 588 ----SVRIYDLSKQEL-VKKLLTG--SKWISSMSIHPNGD-NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAF- 658 (733)
T ss_pred ----ceEEEehhHHHH-HHHHhcC--CeeeeeeeecCCCC-eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhh-
Confidence 899999754321 1221111 11122444443 5 56665 45678899996222333 22 1211 122233
Q ss_pred ccCCCCceEEEEeCCCeEEEEecceEEEEcC
Q psy3725 602 TYSPVDALLAIELPRGEFLLVFHSLAAYVDS 632 (760)
Q Consensus 602 ~~~~~~pl~i~~l~~~EfLLcy~~~gvfVD~ 632 (760)
...-|+.+.--.+++..++|.. ||-|.
T Consensus 659 --H~ryPLfas~sdDgtv~Vfhg~--VY~Dl 685 (733)
T KOG0650|consen 659 --HKRYPLFASGSDDGTVIVFHGM--VYNDL 685 (733)
T ss_pred --ccccceeeeecCCCcEEEEeee--eehhh
Confidence 2334554444445666666553 45554
No 212
>PLN02678 seryl-tRNA synthetase
Probab=57.51 E-value=44 Score=38.78 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=22.8
Q ss_pred CCccceeeeeecccCCCCCCcceEEEeeCCHH-HHHHHHHHH-HHHHHHHhhcCCC
Q psy3725 354 KKDIPCIFRITTSLMDPPGTKNHTLMLADSDT-EKTKWVVAL-SELHRILKRNNLP 407 (760)
Q Consensus 354 ~~dip~if~it~s~l~~~~~~~~l~LlA~S~~-ek~kWv~~L-~~~~~~l~~~~~~ 407 (760)
.+|..-+||+. +. .+-.++.++..+. +-.+|.+.+ +.+..+++.-.++
T Consensus 273 G~~~~GL~Rvh--qF----~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lp 322 (448)
T PLN02678 273 GRDTLGIFRVH--QF----EKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIP 322 (448)
T ss_pred CCcCCcceEEE--EE----EEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCCC
Confidence 45666777773 11 1234555544432 234455544 3444456554444
No 213
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=56.96 E-value=42 Score=33.94 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 98 SKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 98 ~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
..++.....-++-+++++++.+++..+++.|++++++.+
T Consensus 135 ~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 135 EIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333344445666777777777777777776644
No 214
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=56.53 E-value=78 Score=30.06 Aligned_cols=50 Identities=24% Similarity=0.381 Sum_probs=27.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHhhhHHHHHHHHhhhc
Q psy3725 91 TQISEELSKTRSELIAAQKEICDFRLKMESV---SMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 91 q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l---~~e~~~l~~e~~~l~~~~~ 140 (760)
+.+++|+.++.+.--.+..++-.+-.+++++ ..+++.|+.++++++.|.+
T Consensus 33 ~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 33 ASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566555555555555555555444333 3455566666666664443
No 215
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=56.48 E-value=78 Score=33.74 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=21.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 89 AKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 89 akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
+.+.+..|+.+.+.++...+.++++.++++++..++++.++.+++.
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444443
No 216
>PHA02562 46 endonuclease subunit; Provisional
Probab=55.87 E-value=2.2e+02 Score=33.49 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=26.1
Q ss_pred cchhhHHHHHHHhhhHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 65 DRRSQKLEKMELLNLQSSLNSEIQAKT---QISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 65 ~rr~~k~~~~~~l~lqsal~~Ei~akq---~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
.-|...++. .+-+|++.++.--.+.. ...+++.+.+......+.++.+.+....++..+...++.++++
T Consensus 298 ~~~~~~l~d-~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~ 369 (562)
T PHA02562 298 PDRITKIKD-KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEE 369 (562)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433 44444444433333332 2223333333333333333333333333333333333333333
No 217
>KOG0276|consensus
Probab=55.69 E-value=4.5e+02 Score=31.82 Aligned_cols=255 Identities=15% Similarity=0.190 Sum_probs=121.6
Q ss_pred CCeeEEEEecCCC---eEEEEEcCC----C--CCCceEEc--CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccC
Q psy3725 422 TKKIYQMDYIPKE---QLLVVLAGK----Q--RYVQIARV--GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDG 490 (760)
Q Consensus 422 ~~~i~Caa~~~~~---rllvGTe~l----~--~~~~l~rv--~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~ 490 (760)
.+-|||...+.++ .|+=|.|+. . +..+.++. ++..+|.-....|++-++|.=+ .+..|++..-.....
T Consensus 183 ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs-EDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 183 EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS-EDGTVRIWNSKTYKL 261 (794)
T ss_pred ccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec-CCccEEEecCcceeh
Confidence 5679999977655 588888821 1 11233333 3456799888888887766533 467888876654321
Q ss_pred -------CCcce-ee---------cCcccceEEEEeeeeCCCccceEEEEEEecCCce------EEEEE---------Ee
Q psy3725 491 -------DEVEW-VK---------IPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSS------QIILY---------EI 538 (760)
Q Consensus 491 -------~~~~~-~k---------l~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~------~Vl~y---------e~ 538 (760)
-+..| ++ +.=-.|-.++.+|+-.. .|.|-+..++ .|..- ++
T Consensus 262 E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP-------~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev 334 (794)
T KOG0276|consen 262 EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEP-------AVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEV 334 (794)
T ss_pred hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCC-------ceeecCCccEEEEcCceeeeeeceeccCcccc
Confidence 11122 11 11112334444443321 1122110000 11111 11
Q ss_pred cCCcccceeeeeEec-CCcceEEEEecCceEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCC
Q psy3725 539 TRTKTRHKRLHEVIL-PTLAQCIHIFSEGRLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPR 616 (760)
Q Consensus 539 ~~~k~~fkk~kE~~l-P~~~~sl~~~~~~~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~ 616 (760)
+.+..---..||+-- ---|++|.-.++|+..+.|..| |-+|.-.+ .....+ -..+.|+ .-...
T Consensus 335 ~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala-~RnK~f----G~~~eFv----------w~~ds 399 (794)
T KOG0276|consen 335 TDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALA-LRNKAF----GSGLEFV----------WAADS 399 (794)
T ss_pred cCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeee-hhhccc----ccceeEE----------EcCCC
Confidence 111100011233322 2236677777888888888765 66665421 000000 0001111 11112
Q ss_pred CeEEEEec--ceEEEEcCCCCcccccceecCCCCcEEEeeCCeEEEEeCCeeEEEECcCCcEEEEEe--cCCceecCCCC
Q psy3725 617 GEFLLVFH--SLAAYVDSQGHKSREKEIMYPALPTGASYMDGQLLIFSETHVDVFNAESGDWLQTVN--IRRALPLDTRG 692 (760)
Q Consensus 617 ~EfLLcy~--~~gvfVD~~G~rsR~~~I~W~~~P~~~ay~~PYLlvf~~~~IEVr~i~tg~lVQtI~--~~~ir~L~s~G 692 (760)
+||-+-=+ ..-+| ++++-.+.-.+... ...-|..|+|=+-+.+++-+++=++|+||+.|. .+++- -+.+|
T Consensus 400 ne~avRes~~~vki~--knfke~ksi~~~~~---~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~~k~v~-w~d~g 473 (794)
T KOG0276|consen 400 NEFAVRESNGNVKIF--KNFKEHKSIRPDMS---AEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVTSKHVY-WSDNG 473 (794)
T ss_pred CeEEEEecCCceEEE--ecceeccccccccc---eeeecCCceEEEEeCCeEEEEEcccceEEEEEeeccceeE-EecCC
Confidence 45544322 22344 55554433223332 223345556666678999999999999999984 44442 33455
Q ss_pred CEEEEecCCccEE
Q psy3725 693 SLCFSLANDIPYV 705 (760)
Q Consensus 693 ~l~l~s~~~~~~~ 705 (760)
.+.....++.=+|
T Consensus 474 ~lVai~~d~Sfyi 486 (794)
T KOG0276|consen 474 ELVAIAGDDSFYI 486 (794)
T ss_pred CEEEEEecCceeE
Confidence 5554443334333
No 218
>PHA01750 hypothetical protein
Probab=55.26 E-value=55 Score=27.67 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=21.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 90 KTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 90 kq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
|..++.||...+ .++++.+.+.++|.++++.+++++
T Consensus 37 keIV~~ELdNL~-------~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 37 KEIVNSELDNLK-------TEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHhh
Confidence 444555555443 456666677777666666665554
No 219
>PRK09039 hypothetical protein; Validated
Probab=55.16 E-value=1.3e+02 Score=33.64 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhH
Q psy3725 82 SLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKD 129 (760)
Q Consensus 82 al~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~ 129 (760)
.|++||.| +.+.|..+.+++-++|.+.++.+.+.++|..+++...
T Consensus 141 ~L~~qI~a---Lr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 141 LLNQQIAA---LRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555533 4455888888888888888888888888888887764
No 220
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.00 E-value=1.2e+02 Score=40.18 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 78 NLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 78 ~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+....+...++-++.+.++|....+.+..+..++++++.....|..+++.+..+.++++
T Consensus 871 ~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1311)
T TIGR00606 871 SEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELI 929 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 44445555667777777777777777777777777777777777777776666665543
No 221
>KOG3478|consensus
Probab=54.60 E-value=1.4e+02 Score=27.94 Aligned_cols=88 Identities=23% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3725 26 ALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELI 105 (760)
Q Consensus 26 ~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~ 105 (760)
+|-.||.+|.+.+++- || +-+.....-.-|+...+--..+-+||..+-.++-
T Consensus 2 ~~~~kmee~~~kyq~L---------------------------Qk-~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~ 53 (120)
T KOG3478|consen 2 ALQKKMEEEANKYQNL---------------------------QK-ELEKYVESRQKLETQLQENKIVLEELDLLEEDSN 53 (120)
T ss_pred chHHHHHHHHHHHHHH---------------------------HH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccch
Q ss_pred HHH--------HHHHHHH----HhHHHHHHHHhhhHHHHHHHHhhhcc
Q psy3725 106 AAQ--------KEICDFR----LKMESVSMDLRRKDSQLKELQSRLES 141 (760)
Q Consensus 106 ~~e--------~~l~e~e----~~~~~l~~e~~~l~~e~~~l~~~~~~ 141 (760)
-.. ++|.|++ +|++=+..|+.++...+++++..+.+
T Consensus 54 VYKliGpvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k 101 (120)
T KOG3478|consen 54 VYKLIGPVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEK 101 (120)
T ss_pred HHHHhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 222
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=54.45 E-value=30 Score=29.35 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 99 KTRSELIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 99 k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
+.+.....++.++.+.++++++|..|++.|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444556677777777777777777777
No 223
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=54.27 E-value=36 Score=27.36 Aligned_cols=30 Identities=7% Similarity=0.175 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhHHH
Q psy3725 102 SELIAAQKEICDFRLKMESVSMDLRRKDSQ 131 (760)
Q Consensus 102 ~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e 131 (760)
.....+|.++.+++..|..|..+++.|+.|
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334556777777777777777777777654
No 224
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=54.26 E-value=1e+02 Score=32.73 Aligned_cols=58 Identities=12% Similarity=0.148 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 79 LQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 79 lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
.|...+.=-..|+.+.+|+..+..+.-.++...+..+++...+..|++.|+.++++++
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334566666777777777777777677777777777777777776666643
No 225
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=54.01 E-value=1.2e+02 Score=32.20 Aligned_cols=14 Identities=14% Similarity=0.415 Sum_probs=8.2
Q ss_pred cCCcccCCCccccc
Q psy3725 219 TSPTKCNHCTSLMV 232 (760)
Q Consensus 219 ~~pt~C~~C~~~i~ 232 (760)
..+.+|.+|+.+++
T Consensus 219 d~iv~CP~CgRILy 232 (239)
T COG1579 219 DEIVFCPYCGRILY 232 (239)
T ss_pred CCCccCCccchHHH
Confidence 34556777766553
No 226
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=53.83 E-value=50 Score=37.79 Aligned_cols=43 Identities=16% Similarity=0.350 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
.+.+|++++..+++.++..|++.+++++++...++.|..+..+
T Consensus 70 ~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~ 112 (420)
T COG4942 70 SLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQERE 112 (420)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4567788888888888999999999999999998888877643
No 227
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=53.79 E-value=95 Score=33.48 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 79 LQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 79 lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
|-.+.++.-++||.|+-||----...-.+|-+|.-++++++.|..|+.+++.|+|-.+
T Consensus 72 l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 72 LMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677778999999888533334445788999999999999999999999999755
No 228
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=53.49 E-value=2.5e+02 Score=28.33 Aligned_cols=112 Identities=18% Similarity=0.288 Sum_probs=67.2
Q ss_pred CCeeEEEEecCCCeEEEEECC-CCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEE
Q psy3725 456 KKIYQMDYIPEEQLLVVLAGK-QRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQII 534 (760)
Q Consensus 456 k~V~QI~Vi~e~~lLlvLsgk-~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl 534 (760)
.+|..++--|+-+.++++.|. ...+.+|++. +. ....++. .....+... ..|. +|++|--....-.|.
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~---~~--~i~~~~~-~~~n~i~ws--P~G~---~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK---GK--KIFSFGT-QPRNTISWS--PDGR---FLVLAGFGNLNGDLE 128 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCc---cc--EeEeecC-CCceEEEEC--CCCC---EEEEEEccCCCcEEE
Confidence 469999999999999999873 3579999984 11 1123322 222222211 2233 555553221123577
Q ss_pred EEEecCCcccceeeeeEecCCcceEEEEecCceEEEEE--------cCCeEEEEecC
Q psy3725 535 LYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGY--------QSGFSIYKFSQ 583 (760)
Q Consensus 535 ~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~--------~~gF~ivdl~~ 583 (760)
+|.... .+.+.++..+. +..++|.++|+..+.+ ..||.|++..|
T Consensus 129 ~wd~~~----~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 129 FWDVRK----KKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEECCC----CEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 788652 35556666665 4679999988555433 46788888865
No 229
>KOG0318|consensus
Probab=52.51 E-value=4.6e+02 Score=31.02 Aligned_cols=253 Identities=11% Similarity=0.150 Sum_probs=135.0
Q ss_pred CCeeEEEEecCCC---eEEEEEc-C---CCCCCceEEcC-----CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCcc
Q psy3725 422 TKKIYQMDYIPKE---QLLVVLA-G---KQRYVQIARVG-----DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALD 489 (760)
Q Consensus 422 ~~~i~Caa~~~~~---rllvGTe-~---l~~~~~l~rv~-----~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~ 489 (760)
.+.||+++ +-+. |++=|.| + +-.. .+.++- +.|=|.-+.+-|+-..++... -++.+++|+=..
T Consensus 147 Sr~ins~~-~KpsRPfRi~T~sdDn~v~ffeG-PPFKFk~s~r~HskFV~~VRysPDG~~Fat~g-sDgki~iyDGkt-- 221 (603)
T KOG0318|consen 147 SRRINSVD-FKPSRPFRIATGSDDNTVAFFEG-PPFKFKSSFREHSKFVNCVRYSPDGSRFATAG-SDGKIYIYDGKT-- 221 (603)
T ss_pred ceeEeeee-ccCCCceEEEeccCCCeEEEeeC-CCeeeeecccccccceeeEEECCCCCeEEEec-CCccEEEEcCCC--
Confidence 56777776 3433 5777777 2 2222 444432 345589999999977777654 478899986422
Q ss_pred CCCcce-eecCcc---cceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceE----EE
Q psy3725 490 GDEVEW-VKIPET---KGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQC----IH 561 (760)
Q Consensus 490 ~~~~~~-~kl~et---Kgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~s----l~ 561 (760)
.+. -.+++. || ..|++.-.-.+. .+|-+.--| ++.+|....+ +..+++.+++.+-. +-
T Consensus 222 ---ge~vg~l~~~~aHkG-sIfalsWsPDs~--~~~T~SaDk----t~KIWdVs~~----slv~t~~~~~~v~dqqvG~l 287 (603)
T KOG0318|consen 222 ---GEKVGELEDSDAHKG-SIFALSWSPDST--QFLTVSADK----TIKIWDVSTN----SLVSTWPMGSTVEDQQVGCL 287 (603)
T ss_pred ---ccEEEEecCCCCccc-cEEEEEECCCCc--eEEEecCCc----eEEEEEeecc----ceEEEeecCCchhceEEEEE
Confidence 111 223321 22 246665543322 245554444 7999998654 45678888877432 33
Q ss_pred EecCceEEEEEcCCeEEEEecCCCCceeecCCCCCcccccccCCCCceE-------------------------------
Q psy3725 562 IFSEGRLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALL------------------------------- 610 (760)
Q Consensus 562 ~~~~~~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~------------------------------- 610 (760)
|-++ .|+.-.-+|| ..+++++|++..+..++..+++.
T Consensus 288 Wqkd-~lItVSl~G~-----------in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 288 WQKD-HLITVSLSGT-----------INYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred EeCC-eEEEEEcCcE-----------EEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 4445 4444444443 23333333332222222222221
Q ss_pred ----------EEEe---CCCeE-EEEecceEEEEcCCCCccccc-ceecCCCCcEEEeeCC--eEEEEeCCeeEEEECcC
Q psy3725 611 ----------AIEL---PRGEF-LLVFHSLAAYVDSQGHKSREK-EIMYPALPTGASYMDG--QLLIFSETHVDVFNAES 673 (760)
Q Consensus 611 ----------i~~l---~~~Ef-LLcy~~~gvfVD~~G~rsR~~-~I~W~~~P~~~ay~~P--YLlvf~~~~IEVr~i~t 673 (760)
|.++ +.+++ -.-+|+.--+++..|.---.. -++....|..++-..| ++++.....|-|..=.+
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~ 435 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQT 435 (603)
T ss_pred ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCC
Confidence 2222 11333 345666666666544433333 3888999999999888 88888888877765433
Q ss_pred CcEEEEEecCCc---eecCCCCCEEEEecCCccEEEE
Q psy3725 674 GDWLQTVNIRRA---LPLDTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 674 g~lVQtI~~~~i---r~L~s~G~l~l~s~~~~~~~~~ 707 (760)
+ +-+|+.... --++.+|+....+.++-.+=+|
T Consensus 436 ~--~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvy 470 (603)
T KOG0318|consen 436 K--VSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVY 470 (603)
T ss_pred c--ceeeccccccceEEEcCCCCEEEEecccceEEEE
Confidence 3 333333221 1233455555544444444333
No 230
>KOG2111|consensus
Probab=52.26 E-value=3.7e+02 Score=29.85 Aligned_cols=98 Identities=13% Similarity=0.161 Sum_probs=56.3
Q ss_pred CCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCC
Q psy3725 476 KQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPT 555 (760)
Q Consensus 476 k~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~ 555 (760)
|..+|.+.+|..........++.-++ -.-+++...+|. .++-|- .+-.-|.+|....+. ....++.=+-+.
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s---~Iacv~Ln~~Gt---~vATaS--tkGTLIRIFdt~~g~-~l~E~RRG~d~A 227 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDS---DIACVALNLQGT---LVATAS--TKGTLIRIFDTEDGT-LLQELRRGVDRA 227 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccC---ceeEEEEcCCcc---EEEEec--cCcEEEEEEEcCCCc-EeeeeecCCchh
Confidence 44577777775554321111111111 112333444555 444443 335567788854332 234455557789
Q ss_pred cceEEEEecCc-eEEEEEcCC-eEEEEec
Q psy3725 556 LAQCIHIFSEG-RLCVGYQSG-FSIYKFS 582 (760)
Q Consensus 556 ~~~sl~~~~~~-~LcVG~~~g-F~ivdl~ 582 (760)
.+++|+|..+. .|||..++| -+++.|.
T Consensus 228 ~iy~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred eEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence 99999999764 899999998 6677775
No 231
>KOG3647|consensus
Probab=51.69 E-value=70 Score=34.30 Aligned_cols=59 Identities=31% Similarity=0.432 Sum_probs=38.1
Q ss_pred HHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 75 ELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 75 ~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
++++.+--|++-|| .|+-++.+.++.+-+..+..-+.+.+++-=+.|+|+.++-++.|+
T Consensus 102 el~e~Ekvlk~aIq---~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 102 ELLEVEKVLKSAIQ---AIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred cHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555553 455567777776666666666666666666777777777776665
No 232
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=51.63 E-value=32 Score=27.85 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 78 NLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 78 ~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
||+..|.+|-.++-. +.-++..+|.+.+..|+.|..|++.+
T Consensus 8 ELe~klkaerE~R~~----------d~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 8 ELERKLKAEREARSL----------DRSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHhHHhccC----------CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666654433 33455666666677777666666654
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=51.26 E-value=2.8e+02 Score=28.08 Aligned_cols=81 Identities=15% Similarity=0.260 Sum_probs=49.3
Q ss_pred CCeEEEEecc---eEEEEcCCCCcccccceecCCCCc-EEEeeC--CeEEEEe----CCeeEEEECcCCcEEEEEecCCc
Q psy3725 616 RGEFLLVFHS---LAAYVDSQGHKSREKEIMYPALPT-GASYMD--GQLLIFS----ETHVDVFNAESGDWLQTVNIRRA 685 (760)
Q Consensus 616 ~~EfLLcy~~---~gvfVD~~G~rsR~~~I~W~~~P~-~~ay~~--PYLlvf~----~~~IEVr~i~tg~lVQtI~~~~i 685 (760)
.++|.+|+.. ...+-|..|++... ....+. .+.|.. .||++.. +..|+++++.+.+.+.+.....+
T Consensus 71 g~~favi~g~~~~~v~lyd~~~~~i~~----~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~ 146 (194)
T PF08662_consen 71 GNEFAVIYGSMPAKVTLYDVKGKKIFS----FGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDA 146 (194)
T ss_pred CCEEEEEEccCCcccEEEcCcccEeEe----ecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcE
Confidence 5678888643 45555666655533 223333 333332 2766654 23599999999999998876665
Q ss_pred eecC--CCCCEEEEecC
Q psy3725 686 LPLD--TRGSLCFSLAN 700 (760)
Q Consensus 686 r~L~--s~G~l~l~s~~ 700 (760)
..+. ++|.-++.++.
T Consensus 147 t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 147 TDVEWSPDGRYLATATT 163 (194)
T ss_pred EEEEEcCCCCEEEEEEe
Confidence 5443 57777765543
No 234
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=51.17 E-value=2.3e+02 Score=34.34 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=43.0
Q ss_pred EEEEEEecCCceEEEEEEe-----cCCcccceeeeeEec----CCcceEEEEecCceEEEEEcCCeEEEEec
Q psy3725 520 CLALAVKRQNSSQIILYEI-----TRTKTRHKRLHEVIL----PTLAQCIHIFSEGRLCVGYQSGFSIYKFS 582 (760)
Q Consensus 520 ~LcVAvKr~~~~~Vl~ye~-----~~~k~~fkk~kE~~l----P~~~~sl~~~~~~~LcVG~~~gF~ivdl~ 582 (760)
.|+|+... .|+.|.- ....+.+..++++.+ |.++....|+++|.|.||+.+.+.+++=.
T Consensus 89 iLaVGf~~----~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~ 156 (631)
T PF12234_consen 89 ILAVGFPH----HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKW 156 (631)
T ss_pred EEEEEcCc----EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCC
Confidence 67777765 5655542 223344566676644 78888999999999999999999988763
No 235
>KOG1446|consensus
Probab=51.08 E-value=3.8e+02 Score=29.58 Aligned_cols=116 Identities=16% Similarity=0.204 Sum_probs=65.7
Q ss_pred CCCCCceEEcC--CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceE
Q psy3725 443 KQRYVQIARVG--DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHC 520 (760)
Q Consensus 443 l~~~~~l~rv~--~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~ 520 (760)
+..+ ...|.. +.+.|.-|.+-|-.+.+|.-+ .++.|++.+|+.-. .........+.+..|- ..|- +
T Consensus 87 l~dN-kylRYF~GH~~~V~sL~~sP~~d~FlS~S-~D~tvrLWDlR~~~---cqg~l~~~~~pi~AfD----p~GL---i 154 (311)
T KOG1446|consen 87 LHDN-KYLRYFPGHKKRVNSLSVSPKDDTFLSSS-LDKTVRLWDLRVKK---CQGLLNLSGRPIAAFD----PEGL---I 154 (311)
T ss_pred eecC-ceEEEcCCCCceEEEEEecCCCCeEEecc-cCCeEEeeEecCCC---CceEEecCCCcceeEC----CCCc---E
Confidence 3444 666654 567899999999998877754 46899999995211 1111111123333332 1122 5
Q ss_pred EEEEEecCCceEEEEEEecCC-cccceeeeeEec--CCcceE--EEEecCc-eEEEEEcCCe
Q psy3725 521 LALAVKRQNSSQIILYEITRT-KTRHKRLHEVIL--PTLAQC--IHIFSEG-RLCVGYQSGF 576 (760)
Q Consensus 521 LcVAvKr~~~~~Vl~ye~~~~-k~~fkk~kE~~l--P~~~~s--l~~~~~~-~LcVG~~~gF 576 (760)
+++|... -.|..|....- +.-| ..|.+ ++.+.| |.|.++| .|.+++..+|
T Consensus 155 fA~~~~~---~~IkLyD~Rs~dkgPF---~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~ 210 (311)
T KOG1446|consen 155 FALANGS---ELIKLYDLRSFDKGPF---TTFSITDNDEAEWTDLEFSPDGKSILLSTNASF 210 (311)
T ss_pred EEEecCC---CeEEEEEecccCCCCc---eeEccCCCCccceeeeEEcCCCCEEEEEeCCCc
Confidence 5555542 26777886421 2112 23444 444444 9999998 4555666665
No 236
>PTZ00491 major vault protein; Provisional
Probab=50.67 E-value=83 Score=39.01 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=32.2
Q ss_pred HHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy3725 73 KMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMD 124 (760)
Q Consensus 73 ~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e 124 (760)
+.++|+||..-.+=..+=|...|-.++..++.|..|..++.++-|.+.+.-|
T Consensus 698 r~~llel~a~s~aves~g~a~a~a~a~aea~~ie~e~~v~~a~lra~a~~i~ 749 (850)
T PTZ00491 698 RTKLLELQAESAAVESSGQSRAEALAEAEARLIEAEAEVEQAELRAKALRIE 749 (850)
T ss_pred HHHHHHHHhHHHHHhhcchHHHHHHHHHHHHhhhhhhHHHHHHhhhHHHHHh
Confidence 4567777764443333334444566677777888888887776666555433
No 237
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=50.51 E-value=1.8e+02 Score=31.47 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=48.2
Q ss_pred HHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 75 ELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 75 ~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
+.-+++.-++.|.++++.+..|+...|.+.-......-+++.+...|..|++-++..-+
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he 141 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE 141 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh
Confidence 44566777888899999999999999988888888888888888888888888776543
No 238
>PLN02866 phospholipase D
Probab=50.51 E-value=76 Score=40.32 Aligned_cols=87 Identities=18% Similarity=0.290 Sum_probs=54.1
Q ss_pred cceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeec-----CCCCeEEEeeccCcccccCCCccceeeeeecccCCCC
Q psy3725 297 KGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDM-----RDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPP 371 (760)
Q Consensus 297 kgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl-----~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~ 371 (760)
..|+++|++|...-|.+.+...+. +| ...+++|. ..+++.+.- +. -+. .......-|+|+.+
T Consensus 216 ~~w~k~w~v~k~~~l~~~~~p~~~--~~--~~v~lfD~~~~~~~~~~~~~~~--~~-~~k-~~~~~~~~~~i~~~----- 282 (1068)
T PLN02866 216 DNWQKVWAVLKPGFLALLEDPFDA--KP--LDIIVFDVLPASNGNGEGQISL--AK-EIK-ERNPLRFGFKVTCG----- 282 (1068)
T ss_pred CchheeEEEEeccEEEEEecCCCC--ce--eEEEEEecccccccCCCcceee--cc-ccc-ccCCCcceEEEecC-----
Confidence 469999999999987777433322 22 23344553 111222210 00 010 11245778888643
Q ss_pred CCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 372 GTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 372 ~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
..++.|.|.|...-..|+.+|+++.
T Consensus 283 --~r~l~l~~~s~~~~~~w~~ai~~~~ 307 (1068)
T PLN02866 283 --NRSIRLRTKSSAKVKDWVAAINDAG 307 (1068)
T ss_pred --ceEEEEEECCHHHHHHHHHHHHHHH
Confidence 3579999999999999999999886
No 239
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=50.47 E-value=1.1e+02 Score=36.55 Aligned_cols=32 Identities=22% Similarity=0.129 Sum_probs=22.8
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHHHHHh
Q psy3725 9 GQEFRVSDEKDARSYLQALTTKTTQELEYLKH 40 (760)
Q Consensus 9 ~i~qwv~dek~ar~ylq~la~k~~~ele~lr~ 40 (760)
.+-.=+.-|.+||.|.+....++++.|+.++.
T Consensus 293 ~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e 324 (569)
T PRK04778 293 QLYDILEREVKARKYVEKNSDTLPDFLEHAKE 324 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33344556889999888888877777766665
No 240
>KOG1962|consensus
Probab=49.95 E-value=50 Score=34.50 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 93 ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
+.||..+..++...++.+|++..+..+..+.+.+.|+|+.+++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555555555555555555555555555555555555543
No 241
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=49.81 E-value=6.1 Score=30.50 Aligned_cols=28 Identities=32% Similarity=0.814 Sum_probs=16.5
Q ss_pred cCCCcccccccccCeeeec--CCCcccccccccc
Q psy3725 224 CNHCTSLMVGLTRQGVVCD--ICGFACHLSCCDK 255 (760)
Q Consensus 224 C~~C~~~i~Gl~rQG~~C~--~C~~~cH~kC~~~ 255 (760)
|..|.+++ -||.+|. +|+...|..|...
T Consensus 1 C~~C~~iv----~~G~~C~~~~C~~r~H~~C~~~ 30 (43)
T PF08746_consen 1 CEACKEIV----TQGQRCSNRDCNVRLHDDCFKK 30 (43)
T ss_dssp -TTT-SB-----SSSEE-SS--S--EE-HHHHHH
T ss_pred CcccchhH----eeeccCCCCccCchHHHHHHHH
Confidence 77888864 3899999 7999999999654
No 242
>KOG1272|consensus
Probab=49.74 E-value=64 Score=37.18 Aligned_cols=124 Identities=9% Similarity=0.094 Sum_probs=75.2
Q ss_pred ceEEcC-CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEe
Q psy3725 448 QIARVG-DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVK 526 (760)
Q Consensus 448 ~l~rv~-~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvK 526 (760)
.++++. ....|..|+|-+.-+.+ +-+|.++.|.+++|..+.....-..+ -++...++ .+.. .|+++..
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YM-aTtG~Dr~~kIWDlR~~~ql~t~~tp----~~a~~ls~---Sqkg---lLA~~~G 353 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYM-ATTGLDRKVKIWDLRNFYQLHTYRTP----HPASNLSL---SQKG---LLALSYG 353 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEE-eecccccceeEeeeccccccceeecC----CCcccccc---cccc---ceeeecC
Confidence 455555 56789999988775554 45899999999999887643211111 11221211 1222 5666664
Q ss_pred cCCceEEEEEEe--cCCcccceeeeeEecCCcceEEEEec-CceEEEEEcCCeEEEEecCCCC
Q psy3725 527 RQNSSQIILYEI--TRTKTRHKRLHEVILPTLAQCIHIFS-EGRLCVGYQSGFSIYKFSQDNR 586 (760)
Q Consensus 527 r~~~~~Vl~ye~--~~~k~~fkk~kE~~lP~~~~sl~~~~-~~~LcVG~~~gF~ivdl~~~~~ 586 (760)
- .|-+|.- ..+......+-.-.++.+|..+.|++ ++-||||...||.-+=+.|.+.
T Consensus 354 ~----~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGe 412 (545)
T KOG1272|consen 354 D----HVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGE 412 (545)
T ss_pred C----eeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCC
Confidence 3 5666762 21111111122234567888999986 2399999999999877766554
No 243
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=49.50 E-value=1.3e+02 Score=37.18 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=54.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHH
Q psy3725 70 KLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDS 130 (760)
Q Consensus 70 k~~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~ 130 (760)
.-+.+...+|+..|+.=-..|..+..+|++....+..+..+|+|+|..+.+|+.|++..++
T Consensus 585 ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ke 645 (769)
T PF05911_consen 585 EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKE 645 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778889999999899999999999999999999999999999999999999986544
No 244
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=49.09 E-value=52 Score=38.18 Aligned_cols=40 Identities=5% Similarity=0.081 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 101 RSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 101 ~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
...+..+++++++..++.++++++|+.|+.|+++|+.+++
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444566666667777888888888888887776554
No 245
>KOG1117|consensus
Probab=48.69 E-value=26 Score=42.95 Aligned_cols=78 Identities=27% Similarity=0.320 Sum_probs=50.3
Q ss_pred cce-EEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCCCcc
Q psy3725 297 KGW-VRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKN 375 (760)
Q Consensus 297 kgw-~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~~~~ 375 (760)
+|. -+.|++|.+.++-+|-..++= |...-.-.|+| .|+.|.++|. |-|.+++.+ .
T Consensus 201 rg~kak~f~~vsp~~vqL~knlq~f---~lgigit~I~m-----~~~nvk~vdr---------~sfdl~Tp~-------r 256 (1186)
T KOG1117|consen 201 RGFKAKLFVAVSPERVQLYKNLQSF---PLGIGITFIYM-----EVSNVKEVDR---------RSFDLNTPY-------R 256 (1186)
T ss_pred cccccceeEEecCceeeeecccccc---cCCceeEEEec-----cccccccccc---------ceeccCCce-------e
Confidence 455 467899999999999654432 11111223454 3444444432 667775443 3
Q ss_pred eEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 376 HTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 376 ~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
..-++|+++.+|+.|.++++...
T Consensus 257 ~fsftaese~erq~w~ea~q~si 279 (1186)
T KOG1117|consen 257 EFSFTAESETERQIWGEAPQPSI 279 (1186)
T ss_pred eeeeeeccchhhhhhhhccCccc
Confidence 57789999999999999987654
No 246
>PRK12704 phosphodiesterase; Provisional
Probab=48.65 E-value=2.6e+02 Score=33.20 Aligned_cols=6 Identities=17% Similarity=0.207 Sum_probs=2.7
Q ss_pred EEEEEc
Q psy3725 436 LLVVLA 441 (760)
Q Consensus 436 llvGTe 441 (760)
|+|-.+
T Consensus 472 v~v~~~ 477 (520)
T PRK12704 472 VIVKPD 477 (520)
T ss_pred EEeCCC
Confidence 444444
No 247
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=48.53 E-value=84 Score=31.32 Aligned_cols=41 Identities=10% Similarity=0.173 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 93 ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
+.+|+.+.+..+..+|.++.+.++++..+.++-+.|-.=|+
T Consensus 109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443
No 248
>KOG0646|consensus
Probab=48.47 E-value=3.9e+02 Score=31.01 Aligned_cols=148 Identities=12% Similarity=0.212 Sum_probs=88.8
Q ss_pred EEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEE--cCCeEEEEecCCCCceeecCCCCCc
Q psy3725 520 CLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGY--QSGFSIYKFSQDNRPIPLIHQDNPL 597 (760)
Q Consensus 520 ~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~--~~gF~ivdl~~~~~~~~Ll~~~d~s 597 (760)
++..|-++ +=.|.+|++.+... +. .-+.+|+++.+|.-+++|...+|. +...++..+. ++.....++
T Consensus 52 yllsaq~~--rp~l~vw~i~k~~~-~~--q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels-sG~LL~v~~----- 120 (476)
T KOG0646|consen 52 YLLSAQLK--RPLLHVWEILKKDQ-VV--QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELS-SGILLNVLS----- 120 (476)
T ss_pred heeeeccc--CccccccccCchhh-hh--hhcccccceeeeecCCCceEEEeecccCcEEEEEec-cccHHHHHH-----
Confidence 55555543 22788899865332 22 458899999999999988666655 4558888886 444333222
Q ss_pred ccccccCCCCceEEEEe-CCCeEEEEe-cceEEE-------EcCCCCcccccceecCCCCcEEE-----e--eCCeEEEE
Q psy3725 598 VSLLTYSPVDALLAIEL-PRGEFLLVF-HSLAAY-------VDSQGHKSREKEIMYPALPTGAS-----Y--MDGQLLIF 661 (760)
Q Consensus 598 l~f~~~~~~~pl~i~~l-~~~EfLLcy-~~~gvf-------VD~~G~rsR~~~I~W~~~P~~~a-----y--~~PYLlvf 661 (760)
....++..++. .+++++.-= ++.+|+ |+..-+.+-.-.=.|+..-.+|. + ..++|+-.
T Consensus 121 ------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta 194 (476)
T KOG0646|consen 121 ------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA 194 (476)
T ss_pred ------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe
Confidence 23444444443 233333322 112222 34333333333467887766654 2 24688888
Q ss_pred eCC-eeEEEECcCCcEEEEEecCC
Q psy3725 662 SET-HVDVFNAESGDWLQTVNIRR 684 (760)
Q Consensus 662 ~~~-~IEVr~i~tg~lVQtI~~~~ 684 (760)
+.+ .+-++++..|.|+=+|..+.
T Consensus 195 S~D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 195 SEDRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred cCCceEEEEEeccceeeEEEecCC
Confidence 755 68999999999999986665
No 249
>PRK09343 prefoldin subunit beta; Provisional
Probab=48.38 E-value=1.3e+02 Score=28.42 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3725 78 NLQSSLNSEIQAKTQISEELSKTRSELIAAQKE 110 (760)
Q Consensus 78 ~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~ 110 (760)
+||..+++++..=|.++.++.++....-.++..
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q 36 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLE 36 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544444444444444444433333
No 250
>KOG2264|consensus
Probab=48.35 E-value=99 Score=36.49 Aligned_cols=46 Identities=15% Similarity=0.353 Sum_probs=32.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 91 TQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 91 q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
|.++.|..+++....++++.+-..+.....|+-|||+-..+.+|+.
T Consensus 103 qel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 103 QELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 5666666666666666666666666777778888888877777765
No 251
>PHA02562 46 endonuclease subunit; Provisional
Probab=48.25 E-value=1.6e+02 Score=34.65 Aligned_cols=55 Identities=7% Similarity=0.175 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 79 LQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 79 lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
+.++++.-++.+..++.|+.+........+.+|.+.+.+..++..++..+.++.+
T Consensus 349 ~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 349 NKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666666666555666666666666666666665555543
No 252
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=48.22 E-value=20 Score=36.57 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 103 ELIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 103 ~~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
.....+..|++.++-++.|..|+..|
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~~L 156 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQAL 156 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444333
No 253
>KOG0243|consensus
Probab=48.09 E-value=1.4e+02 Score=38.06 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhc
Q psy3725 27 LTTKTTQELEYLKHA 41 (760)
Q Consensus 27 la~k~~~ele~lr~~ 41 (760)
|-.-.++|+|-||+-
T Consensus 405 llKd~~~EIerLK~d 419 (1041)
T KOG0243|consen 405 LLKDLYEEIERLKRD 419 (1041)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445568888888864
No 254
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=47.81 E-value=78 Score=29.65 Aligned_cols=28 Identities=11% Similarity=0.273 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 107 AQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 107 ~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
+.+.+.+.-..|.+|..|-++|++.+++
T Consensus 27 LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 27 LKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555543
No 255
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=47.67 E-value=95 Score=28.01 Aligned_cols=73 Identities=18% Similarity=0.248 Sum_probs=43.3
Q ss_pred eEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCCCcceEE
Q psy3725 299 WVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTL 378 (760)
Q Consensus 299 w~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~~~~~l~ 378 (760)
-+|.++--++-+|+++|-.... .-..|...+.+..|..+.. ..|.|. .|+ .+++
T Consensus 16 kkR~LiLTd~PrL~yvdp~~~~-------~KgeIp~s~~~l~v~~~~~------------~~F~I~-----Tp~--rty~ 69 (89)
T cd01262 16 KKRQLILTNGPRLIYVDPVKKV-------VKGEIPWSDVELRVEVKNS------------SHFFVH-----TPN--KVYS 69 (89)
T ss_pred ceeeEEEecCceEEEEcCCcCe-------EEeEecccccceEEEEecC------------ccEEEE-----CCC--ceEE
Confidence 3566666678899999865321 2233444332334433332 456662 344 2334
Q ss_pred EeeCCHHHHHHHHHHHHHHH
Q psy3725 379 MLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 379 LlA~S~~ek~kWv~~L~~~~ 398 (760)
| .+-...-++|+++|++++
T Consensus 70 l-eD~~~~a~~W~~~I~~~~ 88 (89)
T cd01262 70 F-EDPKGRASQWKKAIEDLQ 88 (89)
T ss_pred E-ECCCCCHHHHHHHHHHHh
Confidence 3 677788899999999886
No 256
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=47.66 E-value=40 Score=31.17 Aligned_cols=34 Identities=3% Similarity=0.088 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 103 ELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 103 ~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
++...++++.+.++++++|+.+.+.|+.|++.++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666677777777777777777777776655
No 257
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=47.60 E-value=41 Score=35.92 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 98 SKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 98 ~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
-+.|..|..+|.+|...+..+.+|+.|+++|+..-..|-.+++
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999888766654443
No 258
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=47.47 E-value=1.9e+02 Score=35.84 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=50.9
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 77 LNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 77 l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
-+||+.|..==..++.+..+|...++.+-.++.++.+++..+.+|...+..|+.|++.
T Consensus 634 ~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~ 691 (769)
T PF05911_consen 634 EELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEK 691 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777776777888999999999999999999999999999999999999999976
No 259
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=47.34 E-value=2.7e+02 Score=26.97 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=30.3
Q ss_pred cceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 357 IPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 357 ip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
-||-|.|.+.. + ...+.|-|+|...|++|+..|..+..
T Consensus 79 d~~kFeiw~~~---~--~~~yilqA~t~e~K~~Wv~~I~~iL~ 116 (133)
T cd01227 79 DTKKFEIWYNA---R--EEVYILQAPTPEIKAAWVNEIRKVLT 116 (133)
T ss_pred CccEEEEEeCC---C--CcEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 38999997653 2 35789999999999999999876644
No 260
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.25 E-value=1.2e+02 Score=36.32 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHH
Q psy3725 83 LNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDS 130 (760)
Q Consensus 83 l~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~ 130 (760)
+..|++-|-.+.-|+......+-.++.+|++.+++.++|..+++.+++
T Consensus 462 ~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 462 FRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666666666777777777777777777666653
No 261
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=47.25 E-value=1e+02 Score=35.49 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=25.1
Q ss_pred CCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHhhcCC
Q psy3725 354 KKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILKRNNL 406 (760)
Q Consensus 354 ~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~~~~~ 406 (760)
.+|..-+||+. +.. ...++.++..++....--..++-...+++.-.+
T Consensus 270 G~~t~GL~Rv~--qF~----k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lgl 316 (418)
T TIGR00414 270 GKDTKGLIRVH--QFN----KVELVKFCKPEESAEELEEMTSDAEQILQELEL 316 (418)
T ss_pred CCCCCcccccc--cee----eeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35666677773 222 245677776665554444444455555654444
No 262
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=46.98 E-value=98 Score=31.34 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=11.2
Q ss_pred HHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 109 KEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 109 ~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
.++++.+++.++...|++.|++|.+.
T Consensus 161 ~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 263
>KOG2896|consensus
Probab=46.88 E-value=1.1e+02 Score=34.27 Aligned_cols=52 Identities=31% Similarity=0.311 Sum_probs=34.7
Q ss_pred cchhhHHHHHHHhhhHHH--------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy3725 65 DRRSQKLEKMELLNLQSS--------LNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKME 119 (760)
Q Consensus 65 ~rr~~k~~~~~~l~lqsa--------l~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~ 119 (760)
+|+-.|.-..|.+.||++ ++.++ |...|+|++-++.+..+.++|++.+.+..
T Consensus 92 ~~~~~~~v~~ek~rl~~~~i~~~iL~~~~~l---~~~~Ealsk~~~~~~k~~~kL~~kr~q~~ 151 (377)
T KOG2896|consen 92 MRVEMKEVSEEKLRLQIECIQLKILVLESNL---QRQIEALSKKRAHLEKTKQKLEDKRQQFN 151 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666677777744 33333 33457888889999999999887654443
No 264
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=46.46 E-value=3.6e+02 Score=28.00 Aligned_cols=41 Identities=10% Similarity=0.176 Sum_probs=27.4
Q ss_pred Cchhhhhhhhh-----hhccchhHHHHHHHHHHHHHHHHHHHHHhc
Q psy3725 1 MSLLASKAGQE-----FRVSDEKDARSYLQALTTKTTQELEYLKHA 41 (760)
Q Consensus 1 ~~~~~~~~~i~-----qwv~dek~ar~ylq~la~k~~~ele~lr~~ 41 (760)
|+++..|..|| .|++--.|...-|.-+-..|.++|...|.+
T Consensus 1 M~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~ 46 (219)
T TIGR02977 1 MGIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTT 46 (219)
T ss_pred CcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555 466666666666667777777777777764
No 265
>KOG2391|consensus
Probab=46.34 E-value=94 Score=34.50 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 79 LQSSLNSEIQAKTQISEELSKTRSELIAAQKEI----CDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 79 lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l----~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
|-.+.+.|+---|..|++|+++.+++..-.+|| +..|++..+|+..++-|+...+|...
T Consensus 219 lR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~ 281 (365)
T KOG2391|consen 219 LRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALE 281 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 334444444444555555555554444444443 34567777788888888888777443
No 266
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=46.34 E-value=2.5e+02 Score=33.13 Aligned_cols=55 Identities=18% Similarity=0.344 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 79 LQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 79 lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+..+|...-+.-+.++|||.-+| .+-|.+|...=...-.|.+.+.+.++|++.+|
T Consensus 460 l~eeL~~a~~~i~~LqDEL~TTr---~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 460 LEEELKEANQNISRLQDELETTR---RNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444455555555444 22334444444444444444444444444443
No 267
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=46.24 E-value=63 Score=33.12 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=19.0
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHH
Q psy3725 69 QKLEKMELLNLQSSLNSEIQAKTQISEELSKT 100 (760)
Q Consensus 69 ~k~~~~~~l~lqsal~~Ei~akq~i~eeL~k~ 100 (760)
.+.|.......|.|++ .|++.+|||+++-
T Consensus 71 ~~~dpd~v~~rqEa~e---aAR~RmQEE~dak 99 (190)
T PF06936_consen 71 AKKDPDVVVRRQEAME---AARRRMQEELDAK 99 (190)
T ss_dssp HTTSHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hhcChhHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3445555556666665 6788888888754
No 268
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.16 E-value=38 Score=40.18 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=37.2
Q ss_pred cccchhhHHHHHHHhhhHHHHHHHHHHHH-----hhH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 63 WRDRRSQKLEKMELLNLQSSLNSEIQAKT-----QIS----EELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 63 w~~rr~~k~~~~~~l~lqsal~~Ei~akq-----~i~----eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
|...=--|..--.-.-|+.||...+...+ .-+ .|.+.........+.+++..+.+|++|..+++.++++++
T Consensus 374 ~~d~~rika~VIrG~~l~eal~~~~e~~~p~e~~~~~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie 453 (652)
T COG2433 374 WKDVERIKALVIRGYPLAEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIE 453 (652)
T ss_pred hhhHHHHHHHeecCCcHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444444444444455666554433222 111 122444445555555566666666666666655555555
Q ss_pred HHHh
Q psy3725 134 ELQS 137 (760)
Q Consensus 134 ~l~~ 137 (760)
.|++
T Consensus 454 ~L~~ 457 (652)
T COG2433 454 KLES 457 (652)
T ss_pred HHHH
Confidence 5543
No 269
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=45.98 E-value=73 Score=31.60 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=38.2
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 69 QKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 69 ~k~~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
..+|.. +-+|+..+...=+.-..+..||+.+.+..- ..|+.....+|..|++.+...++.++
T Consensus 75 ~~ld~e-i~~L~~el~~l~~~~k~l~~eL~~L~~~~t-----~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 75 AELDAE-IKELREELAELKKEVKSLEAELASLSSEPT-----NEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334433 555555555544444455555555544433 46677788888888888888888776
No 270
>KOG0521|consensus
Probab=45.76 E-value=22 Score=44.04 Aligned_cols=97 Identities=24% Similarity=0.373 Sum_probs=59.6
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
..++|+..... +...+.|+|.|+.+.+.-+.++ ........ ..+.||+. +.|. ..+.-.|.-+.
T Consensus 274 ~~~~~~l~~k~-~~~~~tw~r~~f~~q~~~l~~~-~r~~~~~~-----~~~~dL~~-----csvk----~~~~~~drr~C 337 (785)
T KOG0521|consen 274 YRMEGYLRKKA-SNASKTWKRRWFSIQDGQLGYQ-HRGADAEN-----VLIEDLRT-----CSVK----PDAEQRDRRFC 337 (785)
T ss_pred hhhhhhhhhhc-ccchhhHHhhhhhhhccccccc-cccccccc-----cccccchh-----cccc----CCcccccceee
Confidence 44566654333 3367899999998875543333 22211111 22344422 2222 22334478899
Q ss_pred eeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHH
Q psy3725 361 FRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRI 400 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~ 400 (760)
|+|.+ | ..+.+|-|+|+.+.+.|+.+|+.....
T Consensus 338 F~iiS-----~--tks~~lQAes~~d~~~Wi~~i~nsi~s 370 (785)
T KOG0521|consen 338 FEIIS-----P--TKSYLLQAESEKDCQDWISALQNSILS 370 (785)
T ss_pred EEEec-----C--CcceEEecCchhHHHHHHHHHHHHHHH
Confidence 99964 2 346899999999999999999977664
No 271
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=45.72 E-value=1.4e+02 Score=33.21 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=17.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3725 88 QAKTQISEELSKTRSELIAAQKEICDFRLK 117 (760)
Q Consensus 88 ~akq~i~eeL~k~~~~~~~~e~~l~e~e~~ 117 (760)
+|.+-+.+||.+.+..+..+|.+|++.+.+
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666666666666655443
No 272
>PHA01750 hypothetical protein
Probab=45.49 E-value=84 Score=26.62 Aligned_cols=47 Identities=13% Similarity=0.380 Sum_probs=31.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 88 QAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 88 ~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
.-||++.+-...+ -+++|.-.+.+.+++.-..+.+..+++|++.+++
T Consensus 27 KIKq~lkdAvkeI------V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 27 KIKQALKDAVKEI------VNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 4456655444322 4567777888888888777788888888776555
No 273
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=45.16 E-value=2.5e+02 Score=29.27 Aligned_cols=47 Identities=28% Similarity=0.374 Sum_probs=36.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 90 KTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 90 kq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
-..|.+--++..+...+++-.|+..+-++..|..+++.+.+|.+||-
T Consensus 149 Neei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELt 195 (207)
T PF05010_consen 149 NEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELT 195 (207)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455566677888899999999999999999999999976
No 274
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=45.07 E-value=1.4e+02 Score=27.11 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=7.6
Q ss_pred HhHHHHHHHHhhhHHHHHH
Q psy3725 116 LKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 116 ~~~~~l~~e~~~l~~e~~~ 134 (760)
++..++..+++.++.++++
T Consensus 74 ~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 74 AEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 275
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=45.06 E-value=2.4e+02 Score=31.17 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHhhhHHHHHHHHhhhccCC
Q psy3725 92 QISEELSKTRSELIAAQKEICDF-RLKMESVSMDLRRKDSQLKELQSRLESGD 143 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~-e~~~~~l~~e~~~l~~e~~~l~~~~~~g~ 143 (760)
..+.+|.+.+..-+.+|..|..- |.-.--|+..|++|..+..-|+.+++.+.
T Consensus 153 ~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~ 205 (310)
T PF09755_consen 153 AKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPV 205 (310)
T ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 45678888888888888887543 67777888888889888888888788765
No 276
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=44.97 E-value=2.6e+02 Score=33.08 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 93 ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+..||.++|.....+..+...+......|..|+.+.+.+++.++
T Consensus 314 L~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 314 LRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666665443
No 277
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=44.86 E-value=2.9e+02 Score=29.78 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 96 ELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 96 eL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
-|-+.-..|....+.+...+.-+++|..||..|+.|+++|+.
T Consensus 180 ~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 180 ALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343334677888888888889999999999999999998874
No 278
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=44.84 E-value=20 Score=27.93 Aligned_cols=31 Identities=23% Similarity=0.483 Sum_probs=25.0
Q ss_pred ccCCCcccccccccCeeeecCCCcccccccccc
Q psy3725 223 KCNHCTSLMVGLTRQGVVCDICGFACHLSCCDK 255 (760)
Q Consensus 223 ~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~ 255 (760)
+|..|+. .+-....+.|..|+...|..|...
T Consensus 1 ~C~vC~~--~~~~~~~i~C~~C~~~~H~~C~~~ 31 (51)
T PF00628_consen 1 YCPVCGQ--SDDDGDMIQCDSCNRWYHQECVGP 31 (51)
T ss_dssp EBTTTTS--SCTTSSEEEBSTTSCEEETTTSTS
T ss_pred eCcCCCC--cCCCCCeEEcCCCChhhCcccCCC
Confidence 5788887 444677899999999999988754
No 279
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=44.73 E-value=14 Score=42.28 Aligned_cols=43 Identities=28% Similarity=0.583 Sum_probs=27.4
Q ss_pred CCcccCCCcccccc---c---ccCeeeecCCCcccccccccccCCCCCC
Q psy3725 220 SPTKCNHCTSLMVG---L---TRQGVVCDICGFACHLSCCDKVPPSCPV 262 (760)
Q Consensus 220 ~pt~C~~C~~~i~G---l---~rQG~~C~~C~~~cH~kC~~~vp~~C~~ 262 (760)
.+.||..|.-.|-+ . .--...|..|+..||..|+-+-...+++
T Consensus 122 ~~gFC~~C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G 170 (446)
T PF07227_consen 122 EPGFCRRCMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTG 170 (446)
T ss_pred CCCccccCCccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCC
Confidence 35566666554432 1 1223679999999999998766555543
No 280
>PRK02224 chromosome segregation protein; Provisional
Probab=44.53 E-value=1.8e+02 Score=36.44 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=6.7
Q ss_pred hhhhhccchhHHHHHHH
Q psy3725 9 GQEFRVSDEKDARSYLQ 25 (760)
Q Consensus 9 ~i~qwv~dek~ar~ylq 25 (760)
++-.=+++-...++.|+
T Consensus 576 ~~~~~~~~l~~~~~~le 592 (880)
T PRK02224 576 ELNSKLAELKERIESLE 592 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333334444444
No 281
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=44.24 E-value=2.7e+02 Score=27.88 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc
Q psy3725 17 EKDARSYLQALTTKTTQELEYLKHA 41 (760)
Q Consensus 17 ek~ar~ylq~la~k~~~ele~lr~~ 41 (760)
+..|..-..++..-+.+-++.+...
T Consensus 18 ~~QAe~i~~~l~~~l~~~~~~~~~~ 42 (177)
T PF07798_consen 18 EEQAEAIMKALREVLNDSLEKVAQD 42 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777776643
No 282
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=43.89 E-value=1.5e+02 Score=24.78 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=32.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHH--------------HHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 91 TQISEELSKTRSELIAAQKEIC--------------DFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 91 q~i~eeL~k~~~~~~~~e~~l~--------------e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
..++.|+.++......++++|. +-+.+..++..+++++...++.|
T Consensus 7 ~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 7 ERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777777777643 35678888888888888888765
No 283
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=43.66 E-value=1.6e+02 Score=28.48 Aligned_cols=59 Identities=14% Similarity=0.383 Sum_probs=39.8
Q ss_pred HhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 76 LLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 76 ~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
+-.|=...+.+...+..+.+++.+.++++..++..++.++.++.++.+|+.........
T Consensus 40 i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~ 98 (151)
T PF11559_consen 40 IYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQ 98 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555777777777777777777777777777777777777777777655444433
No 284
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=43.61 E-value=59 Score=29.78 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=45.7
Q ss_pred cchhhHHHHHH--HhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhcc
Q psy3725 65 DRRSQKLEKME--LLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLES 141 (760)
Q Consensus 65 ~rr~~k~~~~~--~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~~ 141 (760)
+.|..+|.||| ++||||+ .+..|+....+++|. |+...-.|...++....|+.|+...-.+-|.+-+|++.
T Consensus 12 ~EkiatLNKmAEvLinlks~---~~esrklaky~~sKL---Nltesitle~ve~Ei~~lQ~qL~~~ldeYE~~VrrLE~ 84 (99)
T PF11083_consen 12 QEKIATLNKMAEVLINLKSD---DPESRKLAKYDFSKL---NLTESITLEQVEKEIRELQNQLGLYLDEYEKLVRRLEK 84 (99)
T ss_pred HHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHc---CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788886 6788885 456677777777776 23233345666777777777777666666655445553
No 285
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=43.47 E-value=3.2e+02 Score=29.51 Aligned_cols=93 Identities=16% Similarity=0.250 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Q psy3725 23 YLQALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRS 102 (760)
Q Consensus 23 ylq~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~ 102 (760)
+|++==.++..++..|+.... .. .-+....=..++-+|...++.-..-|..+.-|+.+.+.
T Consensus 22 ~LE~~N~~Le~~i~~~~~~~~-------------~~------~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 22 FLEQENKRLESEIEELREKKG-------------EE------VSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHhccc-------------cc------CcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 455556678888888886510 00 11122333556667777788778888888888888888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 103 ELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 103 ~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
+...+..++.+..+....+..|+..+++++++
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~ 114 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRKDLDE 114 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 88888888888888888888888888888876
No 286
>KOG0804|consensus
Probab=43.45 E-value=3.2e+02 Score=31.60 Aligned_cols=6 Identities=50% Similarity=0.529 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy3725 34 ELEYLK 39 (760)
Q Consensus 34 ele~lr 39 (760)
+||..|
T Consensus 348 qlen~k 353 (493)
T KOG0804|consen 348 QLENQK 353 (493)
T ss_pred HHHhHH
Confidence 333333
No 287
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=43.38 E-value=92 Score=26.96 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHH
Q psy3725 97 LSKTRSELIAAQKEICDFRLKMESVSMDLRRKDS 130 (760)
Q Consensus 97 L~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~ 130 (760)
..+...+.-.+++++.+.+.++++|..|++.|..
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445555566667777777777777777777654
No 288
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=43.29 E-value=18 Score=37.35 Aligned_cols=39 Identities=31% Similarity=0.653 Sum_probs=30.8
Q ss_pred cccCCCc--cccccccc-CeeeecCCCcccccccccccCCCCCC
Q psy3725 222 TKCNHCT--SLMVGLTR-QGVVCDICGFACHLSCCDKVPPSCPV 262 (760)
Q Consensus 222 t~C~~C~--~~i~Gl~r-QG~~C~~C~~~cH~kC~~~vp~~C~~ 262 (760)
-.|..|. +.|..+-. ...+|..|+-..|+.|-.. ..||.
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~--~~Cpk 194 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK--KSCPK 194 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC--CCCCC
Confidence 4788887 46766655 6789999999999999886 56863
No 289
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=42.83 E-value=76 Score=29.32 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHhhhHHHHHHHH
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESV--SMDLRRKDSQLKELQ 136 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l--~~e~~~l~~e~~~l~ 136 (760)
+++.++.+..-..+.+|+..|.+.+.| ..++..|+.++.+++
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~ 78 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELR 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 444444444444455555555555555 555555555554443
No 290
>KOG0266|consensus
Probab=42.61 E-value=5.9e+02 Score=29.37 Aligned_cols=205 Identities=12% Similarity=0.188 Sum_probs=106.9
Q ss_pred CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeec-CcccceEEEEeeeeCCCccceEEEEEEecCCce
Q psy3725 453 GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKI-PETKGCLSFTTGPLTHTRTQHCLALAVKRQNSS 531 (760)
Q Consensus 453 ~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl-~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~ 531 (760)
+...-|..+..-++-..++.-++ +..|+++++. +. -.....+ .-+... +++.....+. .++-+- ..-
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s~s~-D~tiriwd~~--~~-~~~~~~l~gH~~~v--~~~~f~p~g~---~i~Sgs---~D~ 268 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLSGSD-DKTLRIWDLK--DD-GRNLKTLKGHSTYV--TSVAFSPDGN---LLVSGS---DDG 268 (456)
T ss_pred ccccceeeeEECCCCcEEEEecC-CceEEEeecc--CC-CeEEEEecCCCCce--EEEEecCCCC---EEEEec---CCC
Confidence 45667999999999887777665 6899999981 11 0011111 111112 3333333333 333332 123
Q ss_pred EEEEEEecCCcccceeeeeEec-CCcceEEEEecCc-eEEEEEcCC-eEEEEecCCCCc--eeecCCCCCcccccccCCC
Q psy3725 532 QIILYEITRTKTRHKRLHEVIL-PTLAQCIHIFSEG-RLCVGYQSG-FSIYKFSQDNRP--IPLIHQDNPLVSLLTYSPV 606 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~kE~~l-P~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~~~~~~--~~Ll~~~d~sl~f~~~~~~ 606 (760)
+|.+|.+...+ -.+-+.. .+.+.++.|-.++ .|+.|...| ..++|+. ++.. ...+.... ...
T Consensus 269 tvriWd~~~~~----~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~-~~~~~~~~~~~~~~--------~~~ 335 (456)
T KOG0266|consen 269 TVRIWDVRTGE----CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE-TGSKLCLKLLSGAE--------NSA 335 (456)
T ss_pred cEEEEeccCCe----EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECC-CCceeeeecccCCC--------CCC
Confidence 89999986533 1222332 3567788898876 444555444 6778886 3331 12221111 122
Q ss_pred CceEEEEe-CCCeEEEE-e-cceEEEEcCC-CCcccccceecCC--CCcEEEe--eCCeEEEEe-CCeeEEEECcCCcEE
Q psy3725 607 DALLAIEL-PRGEFLLV-F-HSLAAYVDSQ-GHKSREKEIMYPA--LPTGASY--MDGQLLIFS-ETHVDVFNAESGDWL 677 (760)
Q Consensus 607 ~pl~i~~l-~~~EfLLc-y-~~~gvfVD~~-G~rsR~~~I~W~~--~P~~~ay--~~PYLlvf~-~~~IEVr~i~tg~lV 677 (760)
|+.-+.- .+++|||+ + |...-+-|.. |+..+...-.=.. ...++.+ ...|++.-. +..|.++++.++..+
T Consensus 336 -~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~ 414 (456)
T KOG0266|consen 336 -PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGIL 414 (456)
T ss_pred -ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchh
Confidence 4443333 45666653 2 3244444443 3333322111111 1112222 234665554 567999999999999
Q ss_pred EEEecC
Q psy3725 678 QTVNIR 683 (760)
Q Consensus 678 QtI~~~ 683 (760)
|.+.+.
T Consensus 415 ~~l~~h 420 (456)
T KOG0266|consen 415 QRLEGH 420 (456)
T ss_pred hhhcCC
Confidence 999777
No 291
>PLN02320 seryl-tRNA synthetase
Probab=42.61 E-value=1e+02 Score=36.25 Aligned_cols=51 Identities=6% Similarity=0.110 Sum_probs=30.3
Q ss_pred CCCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy3725 353 TKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILKRNNLPNH 409 (760)
Q Consensus 353 ~~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~~~~~~~~ 409 (760)
..+|..-+||+. |. .+-.+++++..++..+.--+.|+-+..+++.=.++.+
T Consensus 330 ~G~d~rGL~Rvh--QF----~KvE~~if~~peqs~~e~e~ll~~~e~i~~~LgLpyr 380 (502)
T PLN02320 330 AGAATRGLYRVH--QF----SKVEMFVICRPEESESFHEELIQIEEDLFTSLGLHFK 380 (502)
T ss_pred CCCcCCCceeee--ee----ecccEEEEECHHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 356888888883 22 1356777776665555444455556666776555433
No 292
>KOG4343|consensus
Probab=42.30 E-value=72 Score=37.33 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=41.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 85 SEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 85 ~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+-|+-|..-+--=.|-|+....+|-+||++++.|+.|+.|-..|+.+++++-
T Consensus 285 RmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 285 RMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 3355555544445566778889999999999999999999999999998865
No 293
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=42.17 E-value=3e+02 Score=25.83 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 102 SELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 102 ~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
.+.-.++.++...+++.++|..++..++.+++.++.
T Consensus 87 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~ 122 (129)
T cd00584 87 EAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEA 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778888888888888888888888877654
No 294
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=42.10 E-value=44 Score=36.49 Aligned_cols=52 Identities=12% Similarity=0.198 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhccCC
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLESGD 143 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~~g~ 143 (760)
.|++||.++.+.+....+-.-+.--|...|..++|.+++|+..-++++-.|-
T Consensus 227 ~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~ 278 (372)
T COG3524 227 KLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGG 278 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3578999998888888888777778889999999999999965445555553
No 295
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=42.07 E-value=92 Score=25.74 Aligned_cols=32 Identities=9% Similarity=0.266 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 105 IAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 105 ~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
-.+|.++.+.+..+..|..++..|+.++..|+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777777777777777665
No 296
>PLN03188 kinesin-12 family protein; Provisional
Probab=42.01 E-value=2e+02 Score=37.40 Aligned_cols=108 Identities=22% Similarity=0.191 Sum_probs=73.2
Q ss_pred chhhhhhhhhhhccchhHH------HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHH
Q psy3725 2 SLLASKAGQEFRVSDEKDA------RSYLQALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKME 75 (760)
Q Consensus 2 ~~~~~~~~i~qwv~dek~a------r~ylq~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~ 75 (760)
.|||--.-|..|+.|-|-| ||-=-++|..+..||-.||.-+ =|.||.-| -+
T Consensus 1125 ~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~er--------------------eker~~~~---~e 1181 (1320)
T PLN03188 1125 QLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVER--------------------EKERRYLR---DE 1181 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH--------------------HHHHHHHH---Hh
Confidence 4677777889999999877 3333567777778898888652 24455443 34
Q ss_pred HhhhHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 76 LLNLQSSLNSEIQAKTQISEELSKTRSELIA---AQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 76 ~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~---~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
--.||..|..---|=|.--|=|.+.|++-.+ +|.+--++|+.+..+..+|++||++-
T Consensus 1182 nk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1182 NKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5568888888888888888888888765443 44555566666666666666665543
No 297
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=41.86 E-value=1.1e+02 Score=25.75 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHH----HHH-HHHHHHHHHHHHHhHHHHHHHHhhhH
Q psy3725 77 LNLQSSLNSEIQAKTQISEELSKT----RSE-LIAAQKEICDFRLKMESVSMDLRRKD 129 (760)
Q Consensus 77 l~lqsal~~Ei~akq~i~eeL~k~----~~~-~~~~e~~l~e~e~~~~~l~~e~~~l~ 129 (760)
=+|+..|+-|.+-|+... -+.++ +.. ...++.+|.+++.+++-|..+|+++.
T Consensus 4 ~~L~~~i~~E~ki~~Gae-~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~ 60 (70)
T PF02185_consen 4 EELQKKIDKELKIKEGAE-NMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQ 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888887777643 22222 111 23344445555544444444444443
No 298
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=41.61 E-value=5.1e+02 Score=28.44 Aligned_cols=212 Identities=16% Similarity=0.252 Sum_probs=113.9
Q ss_pred CCeeEEEEecCCCeEEEEECCCCeEEEEECCCc---cCCCcceee---------cCcccceEEEEeeeeCCCccceEEEE
Q psy3725 456 KKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRAL---DGDEVEWVK---------IPETKGCLSFTTGPLTHTRTQHCLAL 523 (760)
Q Consensus 456 k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L---~~~~~~~~k---------l~etKgc~~f~~g~~~~~~~~~~LcV 523 (760)
..-..|.+-++...|++-.-.+..|.+|+++.- ... ....+ ..+..++|.... ...+. +|.|
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~-~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~---~v~v 160 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEV-VQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGR---FVYV 160 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEE-EEEEESEEEESSTTTTSSTCEEEEEE---TTSS---EEEE
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCccccee-eeecccCCCCCcccccccccceeEEE--CCCCC---EEEE
Confidence 344568888887777776544678999998642 110 00011 123455665543 22344 6666
Q ss_pred EEecCCceEEEEEEecCCcccceeeeeEecC--CcceEEEEecCce-EEEEEc--CCeEEEEec-CCCCceee--cCCCC
Q psy3725 524 AVKRQNSSQIILYEITRTKTRHKRLHEVILP--TLAQCIHIFSEGR-LCVGYQ--SGFSIYKFS-QDNRPIPL--IHQDN 595 (760)
Q Consensus 524 AvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP--~~~~sl~~~~~~~-LcVG~~--~gF~ivdl~-~~~~~~~L--l~~~d 595 (760)
+-.. .-.|.+|.++.....+.....+.+| .-|..|.|.++++ +.|... +.-.++++. .++....+ +..-
T Consensus 161 ~dlG--~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~- 237 (345)
T PF10282_consen 161 PDLG--ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL- 237 (345)
T ss_dssp EETT--TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC-
T ss_pred EecC--CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec-
Confidence 6543 4467778876554334445555554 4588999998864 434442 234555554 12211111 0000
Q ss_pred CcccccccCCCCceEEEEe-CCCeEEEEe----cceEEE-EcC-CCCcccccceecCC-CCcEEEee--CCeEEEEe--C
Q psy3725 596 PLVSLLTYSPVDALLAIEL-PRGEFLLVF----HSLAAY-VDS-QGHKSREKEIMYPA-LPTGASYM--DGQLLIFS--E 663 (760)
Q Consensus 596 ~sl~f~~~~~~~pl~i~~l-~~~EfLLcy----~~~gvf-VD~-~G~rsR~~~I~W~~-~P~~~ay~--~PYLlvf~--~ 663 (760)
+. .+ .....| +.+.+ +++.||.+= |...+| +|. .|....-..+.=.+ .|..|++. .-||+|.. .
T Consensus 238 ~~-~~--~~~~~~-~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 238 PE-GF--TGENAP-AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS 313 (345)
T ss_dssp ET-TS--CSSSSE-EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred cc-cc--cccCCc-eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence 00 01 011123 33444 467788764 356777 544 46655444444334 49999993 44999887 4
Q ss_pred CeeEEEEC--cCCcEEEEE
Q psy3725 664 THVDVFNA--ESGDWLQTV 680 (760)
Q Consensus 664 ~~IEVr~i--~tg~lVQtI 680 (760)
+.|.|+.+ ++|.|..+-
T Consensus 314 ~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 314 NTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TEEEEEEEETTTTEEEEEE
T ss_pred CeEEEEEEeCCCCcEEEec
Confidence 57999977 588877763
No 299
>KOG1274|consensus
Probab=41.24 E-value=8.4e+02 Score=30.79 Aligned_cols=108 Identities=13% Similarity=0.205 Sum_probs=60.1
Q ss_pred CeeEEEEecCCCeEEEEECCCCeEEEEECCCc-cCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEE
Q psy3725 457 KIYQMDYIPEEQLLVVLAGKQRYVRLVPVRAL-DGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIIL 535 (760)
Q Consensus 457 ~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L-~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ 535 (760)
--+-|.+-++-+ .|+-||.++.++.+.-... +.|+ .+.. -|-....++... . .||++.-. + +|.+
T Consensus 15 G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~----ti~~-~g~~v~~ia~~s--~---~f~~~s~~-~--tv~~ 80 (933)
T KOG1274|consen 15 GLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE----TIDI-SGELVSSIACYS--N---HFLTGSEQ-N--TVLR 80 (933)
T ss_pred ceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc----hhhc-cCceeEEEeecc--c---ceEEeecc-c--eEEE
Confidence 356666666656 7777898898888775443 3222 1110 111112221111 1 35555432 2 6777
Q ss_pred EEecCCcccceeeeeEecCCcceEEEEecCceEEEEEcCCeEEEEe
Q psy3725 536 YEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSGFSIYKF 581 (760)
Q Consensus 536 ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~gF~ivdl 581 (760)
|.++...+ .-.+--|.+|-. .++|..+|+.+++-..+|.+-=+
T Consensus 81 y~fps~~~-~~iL~Rftlp~r--~~~v~g~g~~iaagsdD~~vK~~ 123 (933)
T KOG1274|consen 81 YKFPSGEE-DTILARFTLPIR--DLAVSGSGKMIAAGSDDTAVKLL 123 (933)
T ss_pred eeCCCCCc-cceeeeeeccce--EEEEecCCcEEEeecCceeEEEE
Confidence 88765442 235566888877 57888777666666666665444
No 300
>KOG4603|consensus
Probab=41.16 E-value=2.6e+02 Score=28.20 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=20.9
Q ss_pred hHHHHHHHHHH---HHHHHHHHHHHhccC
Q psy3725 18 KDARSYLQALT---TKTTQELEYLKHASS 43 (760)
Q Consensus 18 k~ar~ylq~la---~k~~~ele~lr~~~~ 43 (760)
-|+-||||.-- |.+.+=||.|-.+|.
T Consensus 26 q~v~~~lq~e~lgktavqk~Ld~La~~Gk 54 (201)
T KOG4603|consen 26 QDVFGNLQREHLGKTAVQKTLDQLAQQGK 54 (201)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHcCc
Confidence 47889999876 677888999988754
No 301
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=41.14 E-value=89 Score=38.34 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 82 SLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 82 al~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
.|++|++.. .-+|+.+++++-.+.+..++..+.++.+..|..+|+.+++|.|.
T Consensus 38 ~l~~elk~~---~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~ 90 (717)
T PF09730_consen 38 ELENELKQL---RQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKF 90 (717)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666442 44788888999989999999999999999999999999999773
No 302
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=41.13 E-value=63 Score=27.35 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 102 SELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 102 ~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
.+....++++.+.+++++++..|.+.|+.+++.+
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777777777777777777777777765
No 303
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=41.09 E-value=3.5e+02 Score=34.65 Aligned_cols=14 Identities=14% Similarity=0.463 Sum_probs=8.3
Q ss_pred EEecceEEEEcCCC
Q psy3725 621 LVFHSLAAYVDSQG 634 (760)
Q Consensus 621 Lcy~~~gvfVD~~G 634 (760)
+++|+.-.++|..+
T Consensus 1100 ~~lDE~~~~ld~~~ 1113 (1164)
T TIGR02169 1100 YAFDEVDMFLDGVN 1113 (1164)
T ss_pred EEecccccccCHHH
Confidence 35666666666543
No 304
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=41.02 E-value=1.4e+02 Score=31.82 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=35.3
Q ss_pred HHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 75 ELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 75 ~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+...|+.....=-.+++.|..+-.+.......++.++.+++.....|..+.+.+..|.+.++
T Consensus 48 ea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq 109 (246)
T PF00769_consen 48 EAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQ 109 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445554444455666666666667777777888888888888888888888777777665
No 305
>KOG0250|consensus
Probab=40.99 E-value=76 Score=40.20 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 79 LQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 79 lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
++.+++++|++=+...++|.+ .+.+++..+.++|+.++++...+..|..+++++
T Consensus 655 ~~~s~d~~ie~le~e~~~l~~---~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~ 708 (1074)
T KOG0250|consen 655 DEFSFDDEIEDLEREASRLQK---EILELENQRREAEKNLEELEKKLRELSEHIEQI 708 (1074)
T ss_pred cchhHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777666555544443 444444444444444444444444444444443
No 306
>KOG0250|consensus
Probab=40.99 E-value=3e+02 Score=35.19 Aligned_cols=34 Identities=9% Similarity=0.078 Sum_probs=20.6
Q ss_pred EEecceEEEEcCCCCccccc-----ceecCCCCcEEEeeCCe
Q psy3725 621 LVFHSLAAYVDSQGHKSREK-----EIMYPALPTGASYMDGQ 657 (760)
Q Consensus 621 Lcy~~~gvfVD~~G~rsR~~-----~I~W~~~P~~~ay~~PY 657 (760)
-|-|+|-||.|.--|+.-.. -..|. ..|.|.-|.
T Consensus 1015 r~LDEFDVFMD~vNRKi~~dlLv~~a~~~~---~Q~IfiTPq 1053 (1074)
T KOG0250|consen 1015 RALDEFDVFMDMVNRKISMDLLVDFAKKKG---RQFIFITPQ 1053 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---ceEEEEccc
Confidence 36688889999765554432 24555 455555553
No 307
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=40.95 E-value=4.2e+02 Score=27.24 Aligned_cols=100 Identities=19% Similarity=0.321 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhhH------HHHHHHHHH--
Q psy3725 18 KDARSYLQALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQ------SSLNSEIQA-- 89 (760)
Q Consensus 18 k~ar~ylq~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~lq------sal~~Ei~a-- 89 (760)
.+..+.|--|-.++.+|+-.||.- .|+++.-.+..--.+. ..++.++++
T Consensus 53 e~~e~~Lpqll~~h~eEvr~Lr~~-----------------------LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~ 109 (194)
T PF15619_consen 53 EDTEAELPQLLQRHNEEVRVLRER-----------------------LRKSQEQERELERKLKDKDEELLKTKDELKHLK 109 (194)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------HHhhHHHHHHHHHHHHHHHHHHHH------------------HHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 90 ----------KTQISEELSKTRSELIAAQKEICD------------------FRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 90 ----------kq~i~eeL~k~~~~~~~~e~~l~e------------------~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
+..++.+|..+.......+.++++ -.++..++..++..+..|++.++.++.
T Consensus 110 ~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 110 KLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 308
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=40.80 E-value=5.7e+02 Score=28.71 Aligned_cols=197 Identities=18% Similarity=0.224 Sum_probs=109.9
Q ss_pred CeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcc
Q psy3725 478 RYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLA 557 (760)
Q Consensus 478 r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~ 557 (760)
.-+++|.|+.=.+.-....++.+.-+-+..++... ++ +|.++.+-.+.-.|..|+++.....+..+.+..+|..+
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~--~~---~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~ 90 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD--QR---HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSP 90 (346)
T ss_pred CceEEEEEeCcccccchhhhccccCCCceEEECCC--CC---EEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCC
Confidence 45777777532221111244555555566655332 23 56655553234467788887654556777888888776
Q ss_pred -eEEEEecCceEEEEE--cCC-eEEEEecCCCCceeecCC---CCCcccccccCCCCceEEEEeCCCeEEEEe----cce
Q psy3725 558 -QCIHIFSEGRLCVGY--QSG-FSIYKFSQDNRPIPLIHQ---DNPLVSLLTYSPVDALLAIELPRGEFLLVF----HSL 626 (760)
Q Consensus 558 -~sl~~~~~~~LcVG~--~~g-F~ivdl~~~~~~~~Ll~~---~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy----~~~ 626 (760)
..+++..+|++.+.. ..| ..++.++.++...+..+. ..+.-. ..|...++..+.--+++.||+.- |.+
T Consensus 91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~-~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri 169 (346)
T COG2706 91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPH-ERQESPHVHSANFTPDGRYLVVPDLGTDRI 169 (346)
T ss_pred CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCC-ccccCCccceeeeCCCCCEEEEeecCCceE
Confidence 558888887555543 333 455666544544433211 001000 11112223333333345555433 455
Q ss_pred EEEEcCCCCccccc--ceecCCCCcEEEeeCC--eEEEEe--CCeeEEEECcC--C--cEEEEE
Q psy3725 627 AAYVDSQGHKSREK--EIMYPALPTGASYMDG--QLLIFS--ETHVDVFNAES--G--DWLQTV 680 (760)
Q Consensus 627 gvfVD~~G~rsR~~--~I~W~~~P~~~ay~~P--YLlvf~--~~~IEVr~i~t--g--~lVQtI 680 (760)
-+|-=..|.-.... .++=.+-|-.++|+.. |.+++. ++.|+|+..++ | +-+|+|
T Consensus 170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i 233 (346)
T COG2706 170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI 233 (346)
T ss_pred EEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence 56644488766543 4666688999999764 555555 68999999987 3 567877
No 309
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.71 E-value=1.5e+02 Score=29.54 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 83 LNSEIQAKTQISEE---LSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 83 l~~Ei~akq~i~ee---L~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
|+.=|+.=|.+.+. ...++.+|-.++.++.+..++++.|..|++.|.++...+
T Consensus 82 l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 82 LQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444432 233444555555566666666666666666665555443
No 310
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=40.68 E-value=3e+02 Score=35.93 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3725 80 QSSLNSEIQAKTQISEELSKTRSELIAAQ 108 (760)
Q Consensus 80 qsal~~Ei~akq~i~eeL~k~~~~~~~~e 108 (760)
+..++++-+.++.+..|+.+.+.....++
T Consensus 813 ~~~~~~~~~~~~~~~~ei~~l~~~~~~~~ 841 (1163)
T COG1196 813 ERELESLEQRRERLEQEIEELEEEIEELE 841 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334433333333333
No 311
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=40.39 E-value=1.2e+02 Score=34.97 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=40.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhh
Q psy3725 88 QAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSR 138 (760)
Q Consensus 88 ~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~ 138 (760)
+-+..++..+++..++--++++|.++.--.++.|..|++.++.|++.||++
T Consensus 302 ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~ 352 (622)
T COG5185 302 EKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSN 352 (622)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556677788888888888888888888888899999998888888753
No 312
>KOG0306|consensus
Probab=40.25 E-value=3e+02 Score=33.81 Aligned_cols=134 Identities=12% Similarity=0.189 Sum_probs=0.0
Q ss_pred eEEEEecCCCe-EEEEEc-------CCCCCCceEEcCC--CCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccC----
Q psy3725 425 IYQMDYIPKEQ-LLVVLA-------GKQRYVQIARVGD--TKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDG---- 490 (760)
Q Consensus 425 i~Caa~~~~~r-llvGTe-------~l~~~~~l~rv~~--~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~---- 490 (760)
+.|+..+-+++ |++||+ ++... .+.--.. -..|=-|.+.|+..=++.-+. ++.|..++..-...
T Consensus 415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AHdgaIWsi~~~pD~~g~vT~sa-DktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 415 ILASKFVPGDRYIVLGTKNGELQVFDLASA-SLVETIRAHDGAIWSISLSPDNKGFVTGSA-DKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred EEEEEecCCCceEEEeccCCceEEEEeehh-hhhhhhhccccceeeeeecCCCCceEEecC-CcEEEEEeEEEEeccCcc
Q ss_pred -------CCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEe
Q psy3725 491 -------DEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIF 563 (760)
Q Consensus 491 -------~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~ 563 (760)
-+.....+++.--|.-+.- ++. +|||+.- .| +|.+|..+.=||.... +-..-||.||.+.
T Consensus 493 ~~k~lsl~~~rtLel~ddvL~v~~Sp----dgk---~LaVsLL-dn--TVkVyflDtlKFflsL---YGHkLPV~smDIS 559 (888)
T KOG0306|consen 493 QKKVLSLKHTRTLELEDDVLCVSVSP----DGK---LLAVSLL-DN--TVKVYFLDTLKFFLSL---YGHKLPVLSMDIS 559 (888)
T ss_pred cceeeeeccceEEeccccEEEEEEcC----CCc---EEEEEec-cC--eEEEEEecceeeeeee---cccccceeEEecc
Q ss_pred cCceEEEEEc
Q psy3725 564 SEGRLCVGYQ 573 (760)
Q Consensus 564 ~~~~LcVG~~ 573 (760)
.+.++||-+.
T Consensus 560 ~DSklivTgS 569 (888)
T KOG0306|consen 560 PDSKLIVTGS 569 (888)
T ss_pred CCcCeEEecc
No 313
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=40.06 E-value=4.2e+02 Score=31.41 Aligned_cols=6 Identities=17% Similarity=0.224 Sum_probs=3.0
Q ss_pred EEEEEc
Q psy3725 436 LLVVLA 441 (760)
Q Consensus 436 llvGTe 441 (760)
|+|--+
T Consensus 466 v~v~~~ 471 (514)
T TIGR03319 466 VMVKPE 471 (514)
T ss_pred EEecCC
Confidence 555444
No 314
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.99 E-value=1.3e+02 Score=30.43 Aligned_cols=32 Identities=19% Similarity=0.384 Sum_probs=19.6
Q ss_pred HHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 109 KEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 109 ~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
.+..+.+++.++|..|+++++.+++.++.+++
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666677777777777766664443
No 315
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=39.91 E-value=2.3e+02 Score=34.88 Aligned_cols=57 Identities=19% Similarity=0.341 Sum_probs=35.4
Q ss_pred HHHhhhHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 74 MELLNLQSSLNSEI-QAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 74 ~~~l~lqsal~~Ei-~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
.++|+.-...|.|+ |-|..+.|-|.+++ +++-||.++|+.|.-|.-.+...+.|++.
T Consensus 483 ~~l~~~kq~~d~e~~rik~ev~eal~~~k----~~q~kLe~sekEN~iL~itlrQrDaEi~R 540 (861)
T PF15254_consen 483 QELLENKQQFDIETTRIKIEVEEALVNVK----SLQFKLEASEKENQILGITLRQRDAEIER 540 (861)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHhhhhHhhhHHHHHHHHHHH
Confidence 35566666666655 34444555555443 56678999999999887655555555443
No 316
>KOG4603|consensus
Probab=39.86 E-value=80 Score=31.75 Aligned_cols=42 Identities=12% Similarity=0.278 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH----------------HHHHHHHhhhHHHHHHHH
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKM----------------ESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~----------------~~l~~e~~~l~~e~~~l~ 136 (760)
|||++....+.+++-++|+..+-+ .+|+.++..|+++..+.+
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~ 136 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYR 136 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444433 345555556666655544
No 317
>KOG0290|consensus
Probab=39.49 E-value=4.6e+02 Score=28.91 Aligned_cols=124 Identities=13% Similarity=0.234 Sum_probs=0.0
Q ss_pred EEEEc-------------CCCCCCceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccC-------------
Q psy3725 437 LVVLA-------------GKQRYVQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDG------------- 490 (760)
Q Consensus 437 lvGTe-------------~l~~~~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~------------- 490 (760)
+|||- ++.....-.-|.+-|.|+.|+....---++.=+|-+.+||+|+|+.|+-
T Consensus 165 ~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p 244 (364)
T KOG0290|consen 165 LIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP 244 (364)
T ss_pred eeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCc
Q ss_pred -------------------------------------------CCcceeecCcccceEEEEeeeeCCCccceEEEEEEec
Q psy3725 491 -------------------------------------------DEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKR 527 (760)
Q Consensus 491 -------------------------------------------~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr 527 (760)
..++.++-.-.+.||.++.|...
T Consensus 245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~-------------- 310 (364)
T KOG0290|consen 245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC-------------- 310 (364)
T ss_pred ceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc--------------
Q ss_pred CCceEEEEEEec--CCcccceeeeeEecCCcceEEEEe---cCceEEEEEcCCeEEE
Q psy3725 528 QNSSQIILYEIT--RTKTRHKRLHEVILPTLAQCIHIF---SEGRLCVGYQSGFSIY 579 (760)
Q Consensus 528 ~~~~~Vl~ye~~--~~k~~fkk~kE~~lP~~~~sl~~~---~~~~LcVG~~~gF~iv 579 (760)
++++|.+. ..+.....+--...-.++.-|+|. ++ -|.|.+.+-++++
T Consensus 311 ----qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~D-wiai~~~kkleiL 362 (364)
T KOG0290|consen 311 ----QALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPD-WIAICFGKKLEIL 362 (364)
T ss_pred ----eEEEEecccccccCCCCchhhhhccceeeeeeecccCCC-EEEEEecCeeeEE
No 318
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=39.44 E-value=17 Score=29.63 Aligned_cols=36 Identities=31% Similarity=0.544 Sum_probs=28.7
Q ss_pred CcccCCCcccccccccCeeeecCCCcccccccccccC
Q psy3725 221 PTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVP 257 (760)
Q Consensus 221 pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp 257 (760)
...|..|++-+. ..-..+.|.+|+-..|..|.....
T Consensus 5 ~~~C~~Cg~~~~-~~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 5 GCKCPVCGKKFK-DGDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred CccChhhCCccc-CCCCEEECCCCCCcccHHHHhhCC
Confidence 468999998653 145789999999999999986654
No 319
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=39.18 E-value=1.6e+02 Score=31.26 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
+|-....+++-.++.++.-.+.+++.+...++.+++++++++.
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~ 91 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQ 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555555555555555555555543
No 320
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=39.18 E-value=1.7e+02 Score=28.19 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=24.3
Q ss_pred hhhhhhhhccchhHHHHHHHHH--HHHHHHHHHHHHhc
Q psy3725 6 SKAGQEFRVSDEKDARSYLQAL--TTKTTQELEYLKHA 41 (760)
Q Consensus 6 ~~~~i~qwv~dek~ar~ylq~l--a~k~~~ele~lr~~ 41 (760)
|..|+-..++|+.-=.+|+..| ...|..+.+.|+.+
T Consensus 5 S~~eL~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~ 42 (150)
T PF07200_consen 5 STEELQELLSDEEKLDAFVKSLPQVQELQQEREELLAE 42 (150)
T ss_dssp TTHHHHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 6778888888886666666655 55667777777765
No 321
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=38.82 E-value=1.1e+02 Score=36.41 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=31.1
Q ss_pred HhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy3725 76 LLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMD 124 (760)
Q Consensus 76 ~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e 124 (760)
+=.|-..|+.|+.||+.+.....++...+-.++...++.....+.|...
T Consensus 291 Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 291 IDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3356678999999999888777666655555555544444444444433
No 322
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=38.78 E-value=20 Score=40.82 Aligned_cols=30 Identities=27% Similarity=0.574 Sum_probs=25.9
Q ss_pred CcccCCCcccccccccCeeeecCCCccccc
Q psy3725 221 PTKCNHCTSLMVGLTRQGVVCDICGFACHL 250 (760)
Q Consensus 221 pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~ 250 (760)
-+.|-.|+..|-.-++.||+|..||...-.
T Consensus 350 ~p~Cp~Cg~~m~S~G~~g~rC~kCg~~~~~ 379 (421)
T COG1571 350 NPVCPRCGGRMKSAGRNGFRCKKCGTRARE 379 (421)
T ss_pred CCCCCccCCchhhcCCCCcccccccccCCc
Confidence 459999999999888889999999987653
No 323
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=38.77 E-value=3.8e+02 Score=34.99 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=9.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3725 89 AKTQISEELSKTRSELIAAQKEICD 113 (760)
Q Consensus 89 akq~i~eeL~k~~~~~~~~e~~l~e 113 (760)
+...+++++..++....+++.++..
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1163)
T COG1196 794 ELEELEEELEEAERRLDALERELES 818 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333333333333
No 324
>KOG0240|consensus
Probab=38.77 E-value=3.5e+02 Score=32.31 Aligned_cols=30 Identities=30% Similarity=0.233 Sum_probs=23.8
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHhhHHHHH
Q psy3725 69 QKLEKMELLNLQSSLNSEIQAKTQISEELS 98 (760)
Q Consensus 69 ~k~~~~~~l~lqsal~~Ei~akq~i~eeL~ 98 (760)
|+.++-..++-||+|..+|+-+-.-|||+-
T Consensus 429 qlD~kd~~~n~~sqL~~~lk~q~~~qee~~ 458 (607)
T KOG0240|consen 429 QLDQKDDQINKQSQLMEKLKEQLLDQEELL 458 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455677788899999999988877778773
No 325
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=38.75 E-value=1.2e+02 Score=25.74 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=30.9
Q ss_pred HHHhhhHHHHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 74 MELLNLQSSLNSEIQAKTQISEELSKTRS------ELIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 74 ~~~l~lqsal~~Ei~akq~i~eeL~k~~~------~~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
..+-+|+..|+-|.+.|+...- +-++-. ....+|++|.++..+++.|..+++++
T Consensus 9 ~~l~~L~~~l~~E~~~r~Gaen-m~~~~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~ 68 (72)
T cd00089 9 SRLERLEKELSIELKVKEGAEN-LLRLYSDEKKKKLLAEAEQMLRESKQKLELLKMQLEKL 68 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888877543 222211 23345555555555555555555544
No 326
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=38.63 E-value=1.4e+02 Score=30.60 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=18.8
Q ss_pred CCCCCcCCCCCC-----------CCCCcccchhhHHHHHH
Q psy3725 47 PGVGTVPGVGGP-----------GDKNWRDRRSQKLEKME 75 (760)
Q Consensus 47 ~~~~~~~~~~~~-----------~~~~w~~rr~~k~~~~~ 75 (760)
||+-++|+--.+ .+.-|++=+++-...-|
T Consensus 48 NGsYGASLlF~~~eltYYVALfq~k~fWRViKt~d~~~AE 87 (192)
T PF11180_consen 48 NGSYGASLLFYPKELTYYVALFQQKAFWRVIKTQDEARAE 87 (192)
T ss_pred cCCccceeeecCCcceeeeeeeecCceeEeeecCChhhHH
Confidence 667677763333 46679998877665544
No 327
>PRK10698 phage shock protein PspA; Provisional
Probab=38.35 E-value=2.2e+02 Score=29.87 Aligned_cols=41 Identities=10% Similarity=0.177 Sum_probs=25.0
Q ss_pred Cchhhhhhhhh-----hhccchhHHHHHHHHHHHHHHHHHHHHHhc
Q psy3725 1 MSLLASKAGQE-----FRVSDEKDARSYLQALTTKTTQELEYLKHA 41 (760)
Q Consensus 1 ~~~~~~~~~i~-----qwv~dek~ar~ylq~la~k~~~ele~lr~~ 41 (760)
|+++..|..|| .|++-=.|...-|.-+-..|.++|..+|.+
T Consensus 1 M~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~a 46 (222)
T PRK10698 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRST 46 (222)
T ss_pred CCHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665555444 355544555555666666788888888764
No 328
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=38.12 E-value=1.3e+02 Score=30.59 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHH
Q psy3725 107 AQKEICDFRLKMESVSMDLRRKDSQ 131 (760)
Q Consensus 107 ~e~~l~e~e~~~~~l~~e~~~l~~e 131 (760)
++.+..+.+++..+|..||+..++|
T Consensus 151 a~~~~~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 151 AKKKREELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455666778888888888877665
No 329
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.98 E-value=4.3e+02 Score=31.44 Aligned_cols=51 Identities=22% Similarity=0.458 Sum_probs=38.4
Q ss_pred EEEEEEecCCcccceeeeeEecCCcceEEEEecC-ceEEEEEcCC-eEEEEec
Q psy3725 532 QIILYEITRTKTRHKRLHEVILPTLAQCIHIFSE-GRLCVGYQSG-FSIYKFS 582 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~-~~LcVG~~~g-F~ivdl~ 582 (760)
.-.+||..++|..-..+..+++|+.+.|.++..+ .+|++||..| -.+||..
T Consensus 237 d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~ 289 (545)
T PF11768_consen 237 DSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTT 289 (545)
T ss_pred EEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcC
Confidence 4567888777744344678899999999888763 4999999877 6677774
No 330
>KOG0299|consensus
Probab=37.96 E-value=5.3e+02 Score=29.92 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=34.7
Q ss_pred EEEEEEecCCcccceeeeeEecCCcceEEEEecCce-EEEEEcC
Q psy3725 532 QIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGR-LCVGYQS 574 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~-LcVG~~~ 574 (760)
-|..|.+..+--.+..+.++.+++-+.+|+|+.+|+ |.+|+.+
T Consensus 403 ~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 403 CVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred ceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccc
Confidence 466788876644577889999999999999998886 8888765
No 331
>KOG4378|consensus
Probab=37.95 E-value=1.9e+02 Score=33.78 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=54.4
Q ss_pred cccchhhHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 63 WRDRRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 63 w~~rr~~k~~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
...+|.|..-+-.+-.-|.+-..+||--+. ||=+-.-....-.++|.|.=..|+.|..|++.|++|-++++
T Consensus 600 fs~q~~q~~~~~tlddfq~~~hrdirNl~~---ell~Qfhm~~~Ems~llery~eNe~l~aelk~lreenq~lr 670 (673)
T KOG4378|consen 600 FSNQRLQANKMTTLDDFQVENHRDIRNLAL---ELLLQFHMFMREMSRLLERYNENEMLKAELKFLREENQTLR 670 (673)
T ss_pred hHHHHHHHHhhhhHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhh
Confidence 678999999999999999999999974333 44433444444557777777788889999999999987755
No 332
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=37.73 E-value=1.2e+02 Score=32.66 Aligned_cols=37 Identities=5% Similarity=0.168 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
.++.|+.+.|-.+....-+|+..++|.+++..+++.+
T Consensus 65 ~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 65 DNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666666666654
No 333
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=37.72 E-value=87 Score=33.32 Aligned_cols=56 Identities=16% Similarity=0.273 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhh
Q psy3725 83 LNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRL 139 (760)
Q Consensus 83 l~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~ 139 (760)
+++.|++++...+.|.+.-+ .-..-.++-+.|.++.+.+.|||.++.++..+..+.
T Consensus 137 ~~arl~~l~~~~~rl~~ll~-ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 137 LEARLKNLEAEEERLLELLE-KAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555554444443322 111224466677777777777887777777665433
No 334
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=37.60 E-value=3.8e+02 Score=27.21 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=29.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy3725 88 QAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDL 125 (760)
Q Consensus 88 ~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~ 125 (760)
++=+.++||+.-.+.++-.+|.++++.++.|++|..-.
T Consensus 144 k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 144 KANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466788888888888888888888888888886543
No 335
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=37.55 E-value=3.1e+02 Score=25.64 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHhhhHHHHHH
Q psy3725 82 SLNSEIQAKTQISEELSKTRSELIAAQKEIC----DFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 82 al~~Ei~akq~i~eeL~k~~~~~~~~e~~l~----e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
+|+.+|.--..-++||.+-|.++-++...|+ ...++..+|+.+|.-+.+.++.
T Consensus 20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444456677666655555444444 4568888888888888888865
No 336
>KOG0647|consensus
Probab=37.52 E-value=5.4e+02 Score=28.52 Aligned_cols=112 Identities=10% Similarity=0.147 Sum_probs=69.1
Q ss_pred CCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEE
Q psy3725 455 TKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQII 534 (760)
Q Consensus 455 ~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl 534 (760)
..+|.-+.-..+- -.+.+++-++++.++||..=....+. ..-.-.|-||++.- .. +-|++... =--+|.
T Consensus 72 ~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S~Q~~~v~-~Hd~pvkt~~wv~~-----~~---~~cl~TGS-WDKTlK 140 (347)
T KOG0647|consen 72 DGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLASGQVSQVA-AHDAPVKTCHWVPG-----MN---YQCLVTGS-WDKTLK 140 (347)
T ss_pred CCCeEEEEEccCC-ceEEeeccCCceEEEEccCCCeeeee-ecccceeEEEEecC-----CC---cceeEecc-ccccee
Confidence 3567666666554 45566666789999998432111111 11112456777642 11 22444421 122677
Q ss_pred EEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEc-CCeEEEEec
Q psy3725 535 LYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQ-SGFSIYKFS 582 (760)
Q Consensus 535 ~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~-~gF~ivdl~ 582 (760)
.|...... .+.-+.+|+.++++..... .+.||+. ++..+|+|+
T Consensus 141 fWD~R~~~----pv~t~~LPeRvYa~Dv~~p-m~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 141 FWDTRSSN----PVATLQLPERVYAADVLYP-MAVVATAERHIAVYNLE 184 (347)
T ss_pred ecccCCCC----eeeeeeccceeeehhccCc-eeEEEecCCcEEEEEcC
Confidence 78765433 3456899999999999988 8999986 678999996
No 337
>PRK00106 hypothetical protein; Provisional
Probab=37.36 E-value=5.5e+02 Score=30.63 Aligned_cols=7 Identities=0% Similarity=0.349 Sum_probs=2.5
Q ss_pred HHHhhhH
Q psy3725 123 MDLRRKD 129 (760)
Q Consensus 123 ~e~~~l~ 129 (760)
.+++.++
T Consensus 139 eeLee~~ 145 (535)
T PRK00106 139 KHIDERE 145 (535)
T ss_pred HHHHHHH
Confidence 3333333
No 338
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=37.33 E-value=2.7e+02 Score=24.03 Aligned_cols=57 Identities=19% Similarity=0.160 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 78 NLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 78 ~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
.|-+.||+|-.|-.. |.=+.|..+..+.++|..+=.+++.-.+-|.++-+|..+++.
T Consensus 8 ~lL~~lQnEWDa~mL---E~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~ 64 (70)
T PF08606_consen 8 SLLSTLQNEWDALML---ENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEARE 64 (70)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Confidence 567889999877554 777888889999999999999999999999999999988764
No 339
>KOG0318|consensus
Probab=37.24 E-value=7.8e+02 Score=29.25 Aligned_cols=172 Identities=18% Similarity=0.256 Sum_probs=95.9
Q ss_pred CCeeEEEEecCCCe-EEEEEc-CC------CCC--CceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCC--cc
Q psy3725 422 TKKIYQMDYIPKEQ-LLVVLA-GK------QRY--VQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRA--LD 489 (760)
Q Consensus 422 ~~~i~Caa~~~~~r-llvGTe-~l------~~~--~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~--L~ 489 (760)
.+.|+|.+.-.++. |+=|.- |. .+. ..+.--.....|.+|..-+...++. +|=+.+|+.+++.. ..
T Consensus 320 nK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t--~g~Dd~l~~~~~~~~~~t 397 (603)
T KOG0318|consen 320 NKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT--IGWDDTLRVISLKDNGYT 397 (603)
T ss_pred ccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE--EecCCeEEEEecccCccc
Confidence 78899988754444 555543 31 111 1222222445688888877555543 34457899998832 11
Q ss_pred CCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCc-eE
Q psy3725 490 GDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG-RL 568 (760)
Q Consensus 490 ~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~-~L 568 (760)
.. ...++ |++-..+....++. +++++.-+ .|.+++ .+++..++.+-.++.++++..++ .+
T Consensus 398 ~~--~~~~l----g~QP~~lav~~d~~---~avv~~~~----~iv~l~------~~~~~~~~~~~y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 398 KS--EVVKL----GSQPKGLAVLSDGG---TAVVACIS----DIVLLQ------DQTKVSSIPIGYESSAVAVSPDGSEV 458 (603)
T ss_pred cc--ceeec----CCCceeEEEcCCCC---EEEEEecC----cEEEEe------cCCcceeeccccccceEEEcCCCCEE
Confidence 11 11222 34433333334433 45555544 566665 14566677787888888888764 89
Q ss_pred EEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeC-CCeEEEEec
Q psy3725 569 CVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELP-RGEFLLVFH 624 (760)
Q Consensus 569 cVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~-~~EfLLcy~ 624 (760)
|||-..| -++|.|.|+.-..+..- .....|+..+..+ +++||.|-|
T Consensus 459 aVGG~Dgkvhvysl~g~~l~ee~~~----------~~h~a~iT~vaySpd~~yla~~D 506 (603)
T KOG0318|consen 459 AVGGQDGKVHVYSLSGDELKEEAKL----------LEHRAAITDVAYSPDGAYLAAGD 506 (603)
T ss_pred EEecccceEEEEEecCCcccceeee----------ecccCCceEEEECCCCcEEEEec
Confidence 9998765 88999976432211000 0123455566664 566776654
No 340
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=37.13 E-value=95 Score=27.89 Aligned_cols=28 Identities=7% Similarity=0.145 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 107 AQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 107 ~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
.|+++.+.+.++..|.+|++.|+.+++.
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888888888888887777654
No 341
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=37.10 E-value=2.1e+02 Score=27.87 Aligned_cols=45 Identities=24% Similarity=0.368 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhcc
Q psy3725 97 LSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLES 141 (760)
Q Consensus 97 L~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~~ 141 (760)
+...-..+...|.++....++++.|..|++++..++.+++..++.
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee 67 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEE 67 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445556666666666677777777777776666666544443
No 342
>KOG0963|consensus
Probab=37.08 E-value=4.2e+02 Score=31.88 Aligned_cols=117 Identities=19% Similarity=0.172 Sum_probs=65.2
Q ss_pred hhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhhHHHHHHH
Q psy3725 7 KAGQEFRVSDEKDARSYLQALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQSSLNSE 86 (760)
Q Consensus 7 ~~~i~qwv~dek~ar~ylq~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~lqsal~~E 86 (760)
+|||-==..|=.|| |.-+.-...|.|+||+.--. -|+ ...++..++ -.--.++|+.+++...| |-++
T Consensus 234 ~aev~lim~eLe~a----q~ri~~lE~e~e~L~~ql~~--~N~-~~~~~~~~~----i~~~~~~L~~kd~~i~~--L~~d 300 (629)
T KOG0963|consen 234 AAEVSLIMTELEDA----QQRIVFLEREVEQLREQLAK--ANS-SKKLAKIDD----IDALGSVLNQKDSEIAQ--LSND 300 (629)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh--hhh-hhhhccCCc----hHHHHHHHhHHHHHHHH--HHHH
Confidence 44444445555666 77777888999999985210 000 011111111 12334555555555444 3334
Q ss_pred HH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh------hhHHHHHHHH
Q psy3725 87 IQ-AKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLR------RKDSQLKELQ 136 (760)
Q Consensus 87 i~-akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~------~l~~e~~~l~ 136 (760)
|+ -+...++|+.+-+++.-+.|++|.+...-.++|..+++ .+|+|+.-||
T Consensus 301 i~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 301 IERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence 43 24455677777777777777777777777777666653 4566665555
No 343
>KOG0979|consensus
Probab=36.88 E-value=2.6e+02 Score=35.38 Aligned_cols=121 Identities=15% Similarity=0.178 Sum_probs=70.9
Q ss_pred hhhhhhhccchhHHHHHHHHHHH--HHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHH-HHHHHhhhHHHH
Q psy3725 7 KAGQEFRVSDEKDARSYLQALTT--KTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKL-EKMELLNLQSSL 83 (760)
Q Consensus 7 ~~~i~qwv~dek~ar~ylq~la~--k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~-~~~~~l~lqsal 83 (760)
...-.-||-=+|.-+.|=+-.+. +|.+|+.-|...-. +.-... +.-+++|- +-+..-.++..+
T Consensus 234 l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~-----------pi~~~~---eeLe~~~~et~~~~s~~~~~~ 299 (1072)
T KOG0979|consen 234 LEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIK-----------PIEDKK---EELESEKKETRSKISQKQREL 299 (1072)
T ss_pred HHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhhhhh---hhHHhHHHhHHHHHHHHHHHH
Confidence 33445677777766666554443 46666666655410 110111 11112222 122333344444
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhcc
Q psy3725 84 NSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLES 141 (760)
Q Consensus 84 ~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~~ 141 (760)
+.--+--+.+.|+|..+......+..+|..++++-...+.++++.++.+.++|..+..
T Consensus 300 ~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 300 NEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQE 357 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4444444566778888888888888888888888888888899999999888765554
No 344
>KOG1003|consensus
Probab=36.88 E-value=1.4e+02 Score=30.73 Aligned_cols=52 Identities=23% Similarity=0.391 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh--------------HHHHHHHHhhhHHHHHHHH
Q psy3725 82 SLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLK--------------MESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 82 al~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~--------------~~~l~~e~~~l~~e~~~l~ 136 (760)
+|+..| |.|.+||-+....+-.+.+||.++++- +..+...|+.+..++++.+
T Consensus 8 ~lnrri---~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk 73 (205)
T KOG1003|consen 8 ALNRRI---QLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAK 73 (205)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344445 567888888888888888888887653 3444555666666666654
No 345
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=36.85 E-value=2e+02 Score=30.06 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHH--------HHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhh
Q psy3725 79 LQSSLNSEIQAKTQISEELSKTRS--------ELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSR 138 (760)
Q Consensus 79 lqsal~~Ei~akq~i~eeL~k~~~--------~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~ 138 (760)
+...|+.++++...--|++++.|- .+-.+|.+-++.-.+|-++..+...|+.|+++++.+
T Consensus 144 ~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 144 MLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777666677766442 233455555666667777788888888888877643
No 346
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=36.78 E-value=74 Score=28.45 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=36.5
Q ss_pred HHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 74 MELLNLQSSLNSEIQAKTQISEELSKTRSEL----IAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 74 ~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~----~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
.+..+||..|+.|+.-+..+..-|..-.... ..+-.+.++.=+.+.-|..||-+|+.++.+|+.
T Consensus 15 qeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~ 82 (88)
T PF14389_consen 15 QEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYR 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777766666665554433222 122234555555566666666666666666553
No 347
>KOG0994|consensus
Probab=36.72 E-value=6e+02 Score=33.03 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhH-------HHHHHHhhhHHHHHHHHHHHHhhH
Q psy3725 22 SYLQALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQK-------LEKMELLNLQSSLNSEIQAKTQIS 94 (760)
Q Consensus 22 ~ylq~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k-------~~~~~~l~lqsal~~Ei~akq~i~ 94 (760)
.-+|.|+-++.|-+++|.+.-.+ -.-+.....++...+=..+|-.| -.-+-+=.|+.|-++.-.|+..|+
T Consensus 1511 eqi~~L~~~I~e~v~sL~nVd~I---L~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~ 1587 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAI---LSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQ 1587 (1758)
T ss_pred HHHHHHHHHHHHHHHhcccHHHH---HHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999888875110 00000011111111111111111 111122234444444444444444
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 95 E---ELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 95 e---eL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
+ .+..++..+-..+.+...+|+........+..|.+.+++||.
T Consensus 1588 ~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~ 1633 (1758)
T KOG0994|consen 1588 GADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKH 1633 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 333344444455566666777777788888888888888874
No 348
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=36.64 E-value=1.5e+02 Score=36.59 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=20.2
Q ss_pred hhhhhhccchhHHHHHHHHHHHHHHHHHHHHHh
Q psy3725 8 AGQEFRVSDEKDARSYLQALTTKTTQELEYLKH 40 (760)
Q Consensus 8 ~~i~qwv~dek~ar~ylq~la~k~~~ele~lr~ 40 (760)
...++++.+=++-|..|+.-|.++.|-+|.++.
T Consensus 575 e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d 607 (717)
T PF10168_consen 575 EQQLKELQELQEERKSLRESAEKLAERYEEAKD 607 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666654
No 349
>PTZ00421 coronin; Provisional
Probab=36.59 E-value=7.7e+02 Score=28.99 Aligned_cols=119 Identities=16% Similarity=0.174 Sum_probs=65.4
Q ss_pred cCCCCCeeEEEEec-CCCeEEEEECCCCeEEEEECCCc--cCCCcce-eecCc-ccceEEEEeeeeCCCccceEEEEEEe
Q psy3725 452 VGDTKKIYQMDYIP-EEQLLVVLAGKQRYVRLVPVRAL--DGDEVEW-VKIPE-TKGCLSFTTGPLTHTRTQHCLALAVK 526 (760)
Q Consensus 452 v~~~k~V~QI~Vi~-e~~lLlvLsgk~r~L~l~~L~~L--~~~~~~~-~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvK 526 (760)
.++...|..+..-+ +.++|+ -++.+..|+++++..- ......+ ..+.. .+.+..++..... .. +|+.+-.
T Consensus 72 ~GH~~~V~~v~fsP~d~~~La-SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~---iLaSgs~ 146 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLF-TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MN---VLASAGA 146 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEE-EEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CC---EEEEEeC
Confidence 45667899999998 445544 4555789999998531 1100011 12221 2222222222111 11 3433321
Q ss_pred cCCceEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCc-eEEEEEcCC-eEEEEec
Q psy3725 527 RQNSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFS 582 (760)
Q Consensus 527 r~~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~ 582 (760)
.-+|.+|.+..++ ....+. ..+.+.+|.|..+| .|+.|+..+ ..++|+.
T Consensus 147 ---DgtVrIWDl~tg~----~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r 198 (493)
T PTZ00421 147 ---DMVVNVWDVERGK----AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR 198 (493)
T ss_pred ---CCEEEEEECCCCe----EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECC
Confidence 2278899986543 223343 35678999998776 455666544 6788886
No 350
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=36.39 E-value=1.2e+02 Score=28.46 Aligned_cols=41 Identities=20% Similarity=0.426 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 94 SEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 94 ~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
|+-|.. .+..++.+++.+.++++.+..++.+++.+++.++.
T Consensus 75 q~~L~~---~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 75 QEYLSS---QLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444543 36777788888888888888888888888877663
No 351
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=36.08 E-value=1.5e+02 Score=34.38 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=16.8
Q ss_pred HHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 110 EICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 110 ~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
.++...+...+|.++++.++.++++++.
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 403 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKE 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666554
No 352
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=36.01 E-value=95 Score=35.43 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 98 SKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 98 ~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
.+.+..+..++.+..+.+.+...+..|++++++|++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 25 KELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444556677777777777788888888888888765
No 353
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=35.94 E-value=31 Score=28.86 Aligned_cols=31 Identities=19% Similarity=0.465 Sum_probs=25.0
Q ss_pred CCcccCCCcccccc-cccCeeeecCCCccccc
Q psy3725 220 SPTKCNHCTSLMVG-LTRQGVVCDICGFACHL 250 (760)
Q Consensus 220 ~pt~C~~C~~~i~G-l~rQG~~C~~C~~~cH~ 250 (760)
+...|..|+...-. .....+.|..||+..|.
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~r 58 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDR 58 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECc
Confidence 45679999987765 56778999999998875
No 354
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=35.94 E-value=2.6e+02 Score=30.38 Aligned_cols=53 Identities=13% Similarity=0.344 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhh
Q psy3725 83 LNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSR 138 (760)
Q Consensus 83 l~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~ 138 (760)
.++|| ..+.-.|.++|++-|.-||---|+.--++|-..||++|+.=+|-+++.
T Consensus 87 RetEI---~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 87 RETEI---DELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSS 139 (305)
T ss_pred hHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35666 455667889999999999887777777777777777777777766643
No 355
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=35.47 E-value=5.3e+02 Score=28.47 Aligned_cols=11 Identities=36% Similarity=0.589 Sum_probs=7.9
Q ss_pred HHHHHHHHHHH
Q psy3725 389 KWVVALSELHR 399 (760)
Q Consensus 389 kWv~~L~~~~~ 399 (760)
+|-.|+.-+..
T Consensus 289 ~WT~AlK~lLt 299 (314)
T PF04111_consen 289 EWTKALKYLLT 299 (314)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888776554
No 356
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=35.43 E-value=2.5e+02 Score=32.26 Aligned_cols=64 Identities=9% Similarity=0.299 Sum_probs=43.5
Q ss_pred HHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 73 KMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 73 ~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
..++=++++.+..--+..+.++.+|.+.+.++-.++.+|.+++..+.++...|+.++..++.++
T Consensus 44 q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 44 QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 3344444445544455566677777777777777777777777777777777777777776665
No 357
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=35.32 E-value=2e+02 Score=34.84 Aligned_cols=42 Identities=21% Similarity=0.292 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
|++.+.....-.+++++.+.+....++..+++.+++++++++
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 462 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALR 462 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555556666665555555555555555555544
No 358
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=34.99 E-value=93 Score=35.82 Aligned_cols=49 Identities=16% Similarity=0.267 Sum_probs=25.5
Q ss_pred ccCCCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHH-HHHHHHHhhcCC
Q psy3725 351 HATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVAL-SELHRILKRNNL 406 (760)
Q Consensus 351 ~a~~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L-~~~~~~l~~~~~ 406 (760)
++..+|..-+||+. +.. ...++.++..++. .+|.+.+ +-+..+++.-.+
T Consensus 265 g~~g~~~~GL~Rv~--qF~----k~E~~~f~~~e~s-~~~~~~~l~~~~~i~~~Lgl 314 (425)
T PRK05431 265 GSAGRDTRGLIRVH--QFD----KVELVKFTKPEDS-YAELEELTANAEEILQKLEL 314 (425)
T ss_pred CcCCCCCCceeeee--eee----eeeEEEEECHHHH-HHHHHHHHHHHHHHHHHcCC
Confidence 34445677777773 222 2456677766544 4444444 444445554443
No 359
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=34.82 E-value=38 Score=26.89 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy3725 22 SYLQALTTKTTQELEYLKHA 41 (760)
Q Consensus 22 ~ylq~la~k~~~ele~lr~~ 41 (760)
-|||.++..-.|||+.||..
T Consensus 5 ~yl~~~t~efgdDLd~lR~~ 24 (47)
T PF14615_consen 5 FYLQRLTDEFGDDLDELRKA 24 (47)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 59999999999999999987
No 360
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=34.71 E-value=1.3e+02 Score=29.42 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 82 SLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 82 al~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+|+.-| |.+.+||.+....+-.+..+|+++..+.+.+.+.+..|..+..+..
T Consensus 77 ~l~rri---q~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E 128 (143)
T PF12718_consen 77 QLNRRI---QLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWE 128 (143)
T ss_pred HHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence 455555 6788899888888888888888888888887777777766655443
No 361
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=34.50 E-value=2.1e+02 Score=29.06 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH------------------HHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 79 LQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDF------------------RLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 79 lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~------------------e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
|-..|+....|-+.+++||.+++.+...+..+|..- ..++-.|++|+..++....|++.-.+
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~Te 165 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTATE 165 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666555543333321 12334566666666666666664444
Q ss_pred cC
Q psy3725 141 SG 142 (760)
Q Consensus 141 ~g 142 (760)
.|
T Consensus 166 rd 167 (182)
T PF15035_consen 166 RD 167 (182)
T ss_pred hh
Confidence 44
No 362
>PRK00846 hypothetical protein; Provisional
Probab=34.44 E-value=2e+02 Score=25.29 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=26.2
Q ss_pred HHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 73 KMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 73 ~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+.+.||.+-|.+... -|+|+++ +-+-.+.++.|.++++.+...+++++
T Consensus 14 Ri~~LE~rlAfQe~t------Ie~LN~~----------v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 14 RLVELETRLSFQEQA------LTELSEA----------LADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444433 4666655 33334556666666677766666543
No 363
>KOG3531|consensus
Probab=34.24 E-value=26 Score=42.80 Aligned_cols=87 Identities=25% Similarity=0.434 Sum_probs=59.5
Q ss_pred cccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCC
Q psy3725 293 GGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPG 372 (760)
Q Consensus 293 ~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~ 372 (760)
++...||++.|+|...+.||+|-...|..+.. ++.|-+ ++|+.-.++|-|+ || ++|++.+-.+
T Consensus 934 fknssgwqkLwvvft~fcl~fyKS~qD~~~la------slPlLg--ysvs~P~~~d~i~---K~--~vfkl~fk~h---- 996 (1036)
T KOG3531|consen 934 FKNSSGWQKLWVVFTNFCLFFYKSHQDSEPLA------SLPLLG--YSVSIPAEPDPIQ---KD--YVFKLKFKSH---- 996 (1036)
T ss_pred hhccccceeeeeeecceeeEeecccccccccc------cccccc--cccCCCCCCCCcc---hh--heeeeehhhh----
Confidence 33347999999999999999998777664422 222222 6776555555443 33 7788865322
Q ss_pred CcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 373 TKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 373 ~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
-+++-|+|.-.=.+|.++|..+..
T Consensus 997 ---vyffraes~yt~~rw~evi~~a~~ 1020 (1036)
T KOG3531|consen 997 ---VYFFRAESYYTFERWMEVITDAPS 1020 (1036)
T ss_pred ---HHHHhhhhhhhhhhHHHHhhcCCc
Confidence 246678999999999999876644
No 364
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=33.88 E-value=1.6e+02 Score=27.98 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 99 KTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 99 k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
.+......+|.+++-.+++-+.+..+++.|+.++.++
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788999999999999999999999888654
No 365
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=33.86 E-value=3.3e+02 Score=27.89 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhHHHHHHH
Q psy3725 107 AQKEICDFRLKMESVSMD 124 (760)
Q Consensus 107 ~e~~l~e~e~~~~~l~~e 124 (760)
+|.++.+.|.++.+|+++
T Consensus 129 ~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 366
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=33.82 E-value=2.4e+02 Score=27.24 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=41.6
Q ss_pred HHHhhhHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 74 MELLNLQSSLNSEIQAK-TQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 74 ~~~l~lqsal~~Ei~ak-q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
..|+++|.+--+..+.+ ..|.++|+.++.....+..++.+.+.++.+|.+-+=++=..++-++
T Consensus 36 ~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr 99 (141)
T PF13874_consen 36 KKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILR 99 (141)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544444433 3567888888888899999999999999999998877777777655
No 367
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.76 E-value=4e+02 Score=25.58 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=0.0
Q ss_pred cccchhhHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 63 WRDRRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 63 w~~rr~~k~~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
||-=.+.=+=---|-+|..|..+=-+.=+.++|.|+.+|..+. ++++....++++..+=.+..++++.+++..+.
T Consensus 25 wKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLs---qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~ 99 (126)
T PF07889_consen 25 WKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLS---QRIDRVDDKLDEQKEISKQIKDEVTEVREDVS 99 (126)
T ss_pred ecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH
No 368
>KOG4424|consensus
Probab=33.63 E-value=77 Score=37.50 Aligned_cols=42 Identities=29% Similarity=0.494 Sum_probs=34.2
Q ss_pred ccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHhhc
Q psy3725 356 DIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILKRN 404 (760)
Q Consensus 356 dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~~~ 404 (760)
..|.+|.++ |....+-|-|.|+++|..|+.+|..+....++.
T Consensus 334 ~~~~tF~~~-------G~~r~vel~a~t~~ek~eWv~~I~~~Id~~kq~ 375 (623)
T KOG4424|consen 334 ELPHTFILT-------GKKRGVELQARTEQEKKEWVQAIQDAIDKHKQC 375 (623)
T ss_pred cCCceEEEe-------cccceEEeecCchhhHHHHHHHHHHHHHHHHHH
Confidence 568999996 334679999999999999999999887764443
No 369
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=33.49 E-value=2e+02 Score=27.61 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
+++.....-.-+-+++|++.+++++.|..|+..|+++.-
T Consensus 46 ~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l 84 (126)
T PF07028_consen 46 EELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYL 84 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333344445666666777777777776666653
No 370
>KOG4403|consensus
Probab=33.47 E-value=2.2e+02 Score=32.60 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=31.1
Q ss_pred HHHHhhHHHHHHHHHHH-------HHHHHHHHHHH--------HhHHHHHHHHhhhHHHHHHHHhhhcc
Q psy3725 88 QAKTQISEELSKTRSEL-------IAAQKEICDFR--------LKMESVSMDLRRKDSQLKELQSRLES 141 (760)
Q Consensus 88 ~akq~i~eeL~k~~~~~-------~~~e~~l~e~e--------~~~~~l~~e~~~l~~e~~~l~~~~~~ 141 (760)
|.=+-+|++|.+.|..+ +.+|++|.|+- ..++....|+|+++.++++...+++.
T Consensus 259 qsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 259 QSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAEKELEA 327 (575)
T ss_pred HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456789999988873 33455565431 22333345666776666665544443
No 371
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=33.19 E-value=4.6e+02 Score=25.37 Aligned_cols=6 Identities=67% Similarity=0.495 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy3725 34 ELEYLK 39 (760)
Q Consensus 34 ele~lr 39 (760)
|++..+
T Consensus 6 e~~~~~ 11 (136)
T PF04871_consen 6 ELEEEK 11 (136)
T ss_pred HHHHHH
Confidence 333333
No 372
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.14 E-value=1.5e+02 Score=27.09 Aligned_cols=30 Identities=10% Similarity=0.195 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 106 AAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 106 ~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
..+.++...+++.+.+..+++.++.+++++
T Consensus 74 ~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 74 TIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555443
No 373
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=33.01 E-value=1.1e+02 Score=33.88 Aligned_cols=56 Identities=27% Similarity=0.342 Sum_probs=34.6
Q ss_pred cchhhHH--HHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHhHHH
Q psy3725 65 DRRSQKL--EKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAA-QKEICDFRLKMES 120 (760)
Q Consensus 65 ~rr~~k~--~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~-e~~l~e~e~~~~~ 120 (760)
..++|+| +..|.+.-|++|.+|-||-=.=|-+.=+.|-++|.. |+|++|.-...+.
T Consensus 161 eeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Eirn 219 (401)
T PF06785_consen 161 EEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRN 219 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777 667777777777777777666665655555555544 6665554333333
No 374
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=32.90 E-value=1.4e+02 Score=31.47 Aligned_cols=21 Identities=24% Similarity=0.841 Sum_probs=12.0
Q ss_pred ccCCCcccccccccCeeeecCCCc
Q psy3725 223 KCNHCTSLMVGLTRQGVVCDICGF 246 (760)
Q Consensus 223 ~C~~C~~~i~Gl~rQG~~C~~C~~ 246 (760)
.|..|.-.| -|.+-.|-.|+.
T Consensus 196 ~C~sC~qqI---HRNAPiCPlCK~ 216 (230)
T PF10146_consen 196 TCQSCHQQI---HRNAPICPLCKA 216 (230)
T ss_pred hhHhHHHHH---hcCCCCCccccc
Confidence 566665543 255666666653
No 375
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=32.67 E-value=3.2e+02 Score=23.50 Aligned_cols=61 Identities=23% Similarity=0.319 Sum_probs=36.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 71 LEKMELLNLQSSLNSEIQAKTQISEELSKT----RSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 71 ~~~~~~l~lqsal~~Ei~akq~i~eeL~k~----~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
..-.+++++...|..+|+.++. ||.+. -.+.|.+-..+...+....+|...+..+...++.
T Consensus 19 ~s~~~i~~~~~~L~~~i~~~~~---eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~ 83 (87)
T PF08700_consen 19 SSIKEIRQLENKLRQEIEEKDE---ELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQS 83 (87)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888876654 44433 4445555555555555555555555555555443
No 376
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=32.45 E-value=2e+02 Score=24.87 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 93 ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
+.+|-.+..........-++..++++.++..++..+++.+
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~ 56 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKL 56 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445444444444444444444444444444444444333
No 377
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.37 E-value=3.2e+02 Score=32.21 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 93 ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
+.+++.+.+++...++.++++.+++..+|+.|+..+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444444444444333
No 378
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=32.29 E-value=4.8e+02 Score=34.30 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
++..+...+...++.++++++++.+....++..++.++++++
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 524 (1201)
T PF12128_consen 483 EQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELR 524 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555444
No 379
>PLN02678 seryl-tRNA synthetase
Probab=32.16 E-value=1.1e+02 Score=35.52 Aligned_cols=13 Identities=8% Similarity=0.046 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q psy3725 19 DARSYLQALTTKT 31 (760)
Q Consensus 19 ~ar~ylq~la~k~ 31 (760)
+.-.+-++|+.+-
T Consensus 14 ~~~~v~~~l~~R~ 26 (448)
T PLN02678 14 DPELIRESQRRRF 26 (448)
T ss_pred CHHHHHHHHHhhC
Confidence 3334555666554
No 380
>KOG1170|consensus
Probab=32.07 E-value=26 Score=42.73 Aligned_cols=59 Identities=22% Similarity=0.467 Sum_probs=47.3
Q ss_pred CCCCCceeEEeeecCCcccCCCccccc-ccccCeeeecCCCcccccccccccCCCCCCCc
Q psy3725 206 RSSKHHQFITRTFTSPTKCNHCTSLMV-GLTRQGVVCDICGFACHLSCCDKVPPSCPVPP 264 (760)
Q Consensus 206 ~~~~~H~F~~~~f~~pt~C~~C~~~i~-Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p~ 264 (760)
+...+|.+..-....+.+|.+|...-- -+.-|-++|--|+-.+|..|.......|+...
T Consensus 103 ~a~mphqw~Egnlpvsskc~vc~k~cgs~~rlqd~rclwc~~~vh~~c~~~~~~~cs~~~ 162 (1099)
T KOG1170|consen 103 NAIMPHQWMEGNLPVSSKCSVCEKPCGSVLRLQDYRCLWCGCCVHDTCIGNLARACSLGH 162 (1099)
T ss_pred cccCchhhhhcCCCccccccccccccccccccCCcceEeeccEeehhhhhhHHhhccccc
Confidence 347789999888888889988766321 13468899999999999999999999997653
No 381
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=32.02 E-value=1.8e+02 Score=27.29 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=39.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhcc
Q psy3725 91 TQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLES 141 (760)
Q Consensus 91 q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~~ 141 (760)
..|-+-|.++-...-.+-.++.+.+++..+|.+|-..|+-|-+-|+.+++.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666667777888999999999999999999998888876663
No 382
>KOG1029|consensus
Probab=31.94 E-value=2e+02 Score=35.41 Aligned_cols=99 Identities=20% Similarity=0.191 Sum_probs=55.0
Q ss_pred hhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHh-----ccCCCC--CCCCCcCCCCCCCCCCcccchhhHHHHHHH-
Q psy3725 5 ASKAGQEFRVSDEKDARSYLQALTTKTTQELEYLKH-----ASSLGG--PGVGTVPGVGGPGDKNWRDRRSQKLEKMEL- 76 (760)
Q Consensus 5 ~~~~~i~qwv~dek~ar~ylq~la~k~~~ele~lr~-----~~~~~~--~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~- 76 (760)
|.++|+...-+-|+.=--||-+=-+-+.-|||+|-- ++.+++ -+.+++--. -=.++.+--+.+|++
T Consensus 416 ar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~------ie~~~~q~e~~isei~ 489 (1118)
T KOG1029|consen 416 ARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTE------IEEVTKQRELMISEID 489 (1118)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHH------HHHhhhHHHHHHHHHH
Confidence 456777777777887778888888888888888853 222222 111111000 001122222333443
Q ss_pred ------hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3725 77 ------LNLQSSLNSEIQAKTQISEELSKTRSELIAAQK 109 (760)
Q Consensus 77 ------l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~ 109 (760)
-|+|.-|+.-+.-||.+-+.|.+..+++...-+
T Consensus 490 qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~ 528 (1118)
T KOG1029|consen 490 QLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQ 528 (1118)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcch
Confidence 355555666667777777777777666554433
No 383
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=31.90 E-value=1.8e+02 Score=31.92 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=47.9
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 67 RSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 67 r~~k~~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
++|+-.+-.-|.+|.+-|.=++-+..+.-+++.+|..|..+-++|.+++.+...|..|+...+.-+.|
T Consensus 109 qsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrE 176 (305)
T PF14915_consen 109 QSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALRE 176 (305)
T ss_pred HHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666655666666666778888888888888888888888888887666555544
No 384
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=31.67 E-value=6.8e+02 Score=29.15 Aligned_cols=106 Identities=22% Similarity=0.191 Sum_probs=69.1
Q ss_pred hhhhhhhhhhhccchhHH------HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHH
Q psy3725 3 LLASKAGQEFRVSDEKDA------RSYLQALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMEL 76 (760)
Q Consensus 3 ~~~~~~~i~qwv~dek~a------r~ylq~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~ 76 (760)
|++--.-|..||.|=|-| ||-=-.+|.-+..||-.||.-+ =|.|| .=+-+-
T Consensus 356 Ll~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~er--------------------EkEr~---~l~~eN 412 (488)
T PF06548_consen 356 LLARHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAER--------------------EKERR---FLKDEN 412 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH--------------------HHHHH---HHHHHh
Confidence 556666788888888876 3333456666777888888641 12333 334566
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHhhhHHH
Q psy3725 77 LNLQSSLNSEIQAKTQISEELSKTRSELI---AAQKEICDFRLKMESVSMDLRRKDSQ 131 (760)
Q Consensus 77 l~lqsal~~Ei~akq~i~eeL~k~~~~~~---~~e~~l~e~e~~~~~l~~e~~~l~~e 131 (760)
-.||..|..---|=|.--|=|-+.|.+-. .+|.+--++++.+..+..+|++|++.
T Consensus 413 k~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~k 470 (488)
T PF06548_consen 413 KGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRK 470 (488)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888887787777776543 34455556666666666666666653
No 385
>KOG4815|consensus
Probab=31.60 E-value=3.8e+02 Score=29.44 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 78 NLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 78 ~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
..|+..|--.-.-+.+.+.|+.--++-+.++.+....-..|++|++.+..|-+++.+|.-
T Consensus 299 qaqq~~qvag~qv~llkdql~ae~~arleaqarthqll~ankdlle~iq~lv~~lq~le~ 358 (511)
T KOG4815|consen 299 QAQQQTQVAGAQVHLLKDQLAAEAAARLEAQARTHQLLLANKDLLEHIQLLVKQLQELEL 358 (511)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 334444433334456778888888888999999999999999999999999999988763
No 386
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=31.52 E-value=2.7e+02 Score=30.07 Aligned_cols=29 Identities=3% Similarity=0.082 Sum_probs=19.4
Q ss_pred HHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 108 QKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 108 e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
.....|++++.+.|..+.+.|+.|+++++
T Consensus 201 ~~~~~e~~~r~~~lr~~~~~l~~el~~aK 229 (264)
T PF07246_consen 201 KILHEELEARESGLRNESKWLEHELSDAK 229 (264)
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHHH
Confidence 34455666677777777777777776655
No 387
>KOG1451|consensus
Probab=31.49 E-value=91 Score=37.01 Aligned_cols=100 Identities=21% Similarity=0.369 Sum_probs=62.2
Q ss_pred ceeeeeecccccccccceEEEEEEEeC-cEEEEEecCCCCCC-CCccceeEEeecCCCCeEE-EeeccCcccccCCCccc
Q psy3725 282 AYEGYVKVPKTGGVKKGWVRQFVVVCD-FKLFLYDISPDRNA-LPAVYVSLVLDMRDEDFAV-SGVRESDVIHATKKDIP 358 (760)
Q Consensus 282 ~~eG~vkvp~~~~~kkgw~r~~~~l~~-~kL~~yd~~~~~~~-~p~~~~~~~ldl~d~~fsV-~~V~~sdvi~a~~~dip 358 (760)
.+|||+-+-...+..+.|-+.||+-.. .|.+.---.+.+.. ..+ .++.|.+ +++.. .+.+-|--
T Consensus 266 t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g---------~~~~~~lKsC~RR----ktdSIdKR 332 (812)
T KOG1451|consen 266 TKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMG---------QTATFKLKSCSRR----KTDSIDKR 332 (812)
T ss_pred ccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCC---------CcceEEehhhccC----cccccccc
Confidence 578988554444556789999999875 55544322221111 111 1223444 33321 22233667
Q ss_pred eeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 359 CIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 359 ~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
+.|.|.+.. .|| .++|-|.|+.+|+.|++|++.++-
T Consensus 333 FCFDve~~e--rpg---viTmQALSE~drrlWmeAMDG~ep 368 (812)
T KOG1451|consen 333 FCFDVEVEE--RPG---VITMQALSEKDRRLWMEAMDGAEP 368 (812)
T ss_pred eeeeeeecc--cCC---eeehHhhhhhHHHHHHHHhcCCCc
Confidence 999998664 555 699999999999999999887643
No 388
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=31.40 E-value=4.5e+02 Score=31.95 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=17.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 91 TQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 91 q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
..++.++.+.+++.-..+.++.+.+++..++..+++++
T Consensus 431 ~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 431 GEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444443
No 389
>PRK10722 hypothetical protein; Provisional
Probab=31.39 E-value=1.6e+02 Score=31.35 Aligned_cols=72 Identities=17% Similarity=0.249 Sum_probs=46.1
Q ss_pred cchhhHHHHHHHhhhHHH--H---HHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 65 DRRSQKLEKMELLNLQSS--L---NSEIQAKTQISEELSKTRSELIAA----QKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 65 ~rr~~k~~~~~~l~lqsa--l---~~Ei~akq~i~eeL~k~~~~~~~~----e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
.+|.+=++......++-+ | =.=-+.+|.++=.|..-|..+-.+ +.+|...++++.+|+.+++...+++|.|
T Consensus 123 ~err~~l~rl~~~~~~~p~~lrPL~qlwr~~Q~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnL 202 (247)
T PRK10722 123 AERRQIVERLNAYSLQIPAQVRPLYQLWRDGQALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENL 202 (247)
T ss_pred HHHHHHHHHHhhcccccchhhhHHHHHHHHhhHHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555444443322 1 122345555444444445544444 8899999999999999999999999987
Q ss_pred H
Q psy3725 136 Q 136 (760)
Q Consensus 136 ~ 136 (760)
.
T Consensus 203 T 203 (247)
T PRK10722 203 T 203 (247)
T ss_pred H
Confidence 6
No 390
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=31.23 E-value=1.9e+02 Score=26.52 Aligned_cols=26 Identities=4% Similarity=0.164 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHH
Q psy3725 105 IAAQKEICDFRLKMESVSMDLRRKDS 130 (760)
Q Consensus 105 ~~~e~~l~e~e~~~~~l~~e~~~l~~ 130 (760)
-.++.+|++.++.|..|..+++.+++
T Consensus 83 ~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 83 EQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33455566666666666666666554
No 391
>PRK11281 hypothetical protein; Provisional
Probab=31.07 E-value=2.6e+02 Score=36.30 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHH
Q psy3725 79 LQSSLNSEIQAKTQISEELSKTRSE 103 (760)
Q Consensus 79 lqsal~~Ei~akq~i~eeL~k~~~~ 103 (760)
|++.|..+-+.-|..|++|+..-+.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~Nsq 150 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQ 150 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444445555555544333
No 392
>KOG2111|consensus
Probab=31.07 E-value=7.8e+02 Score=27.43 Aligned_cols=135 Identities=19% Similarity=0.288 Sum_probs=77.5
Q ss_pred EEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEcCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEE
Q psy3725 532 QIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLA 611 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i 611 (760)
+|++|. .-+ .+.+.|+..-.++.++.+-++ +|.|-...--.+|....+.....-++ ...+.+-+|.
T Consensus 76 kviIWD--D~k--~~~i~el~f~~~I~~V~l~r~-riVvvl~~~I~VytF~~n~k~l~~~e---------t~~NPkGlC~ 141 (346)
T KOG2111|consen 76 KVIIWD--DLK--ERCIIELSFNSEIKAVKLRRD-RIVVVLENKIYVYTFPDNPKLLHVIE---------TRSNPKGLCS 141 (346)
T ss_pred eEEEEe--ccc--CcEEEEEEeccceeeEEEcCC-eEEEEecCeEEEEEcCCChhheeeee---------cccCCCceEe
Confidence 789998 222 356889999999999999999 99999998877887753222221111 1111122433
Q ss_pred EEeCCCeEEEEec--ceEE--EEcCCCCcc-cccceecCCCCcE-EEeeCC-eEEEEeCC---eeEEEECcCCcEEEEE
Q psy3725 612 IELPRGEFLLVFH--SLAA--YVDSQGHKS-REKEIMYPALPTG-ASYMDG-QLLIFSET---HVDVFNAESGDWLQTV 680 (760)
Q Consensus 612 ~~l~~~EfLLcy~--~~gv--fVD~~G~rs-R~~~I~W~~~P~~-~ay~~P-YLlvf~~~---~IEVr~i~tg~lVQtI 680 (760)
+.-..+.-+|+|- ..|- .+|..-... .+..|+=...+.+ ++...+ -++|.... -|-|++.++|+++|..
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~ 220 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL 220 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee
Confidence 3332333334442 1111 133322222 2334554444443 344444 66666532 4899999999999985
No 393
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=31.05 E-value=65 Score=32.36 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 98 SKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 98 ~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+++=+.|.-+|.+|+|- +.|+.|+.+|+.|+.+||
T Consensus 10 N~AIERnalLE~ELdEK----E~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 10 NQAIERNALLESELDEK----ENLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHCH-----------
T ss_pred HHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 33334555555555442 234455555555555554
No 394
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=31.00 E-value=7.2e+02 Score=26.99 Aligned_cols=42 Identities=19% Similarity=0.401 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
|||.+.....-.+..++.|.+.|..+|..|-.++.+-+.-++
T Consensus 214 EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 214 EELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444444444333333
No 395
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=30.96 E-value=3.4e+02 Score=28.00 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhc
Q psy3725 28 TTKTTQELEYLKHA 41 (760)
Q Consensus 28 a~k~~~ele~lr~~ 41 (760)
|.-+-||||.||..
T Consensus 62 aK~l~eEledLk~~ 75 (193)
T PF14662_consen 62 AKALEEELEDLKTL 75 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 44567777777764
No 396
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=30.96 E-value=1.9e+02 Score=29.58 Aligned_cols=11 Identities=18% Similarity=0.441 Sum_probs=5.0
Q ss_pred CCCCCCcccch
Q psy3725 57 GPGDKNWRDRR 67 (760)
Q Consensus 57 ~~~~~~w~~rr 67 (760)
|+..--|--.-
T Consensus 51 Gssn~YWsFps 61 (188)
T PF03962_consen 51 GSSNYYWSFPS 61 (188)
T ss_pred cCeeEEEecCh
Confidence 33444565443
No 397
>COG1422 Predicted membrane protein [Function unknown]
Probab=30.81 E-value=1.3e+02 Score=31.08 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHhhhHHHHHH
Q psy3725 94 SEELSKTRSELIAAQKEICDFR-LKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 94 ~eeL~k~~~~~~~~e~~l~e~e-~~~~~l~~e~~~l~~e~~~ 134 (760)
+|++.++|..--+++++-+|++ +++.+-.++++..+.|+-+
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~ 112 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMD 112 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4677777777777777777764 3444444445555555443
No 398
>KOG2751|consensus
Probab=30.65 E-value=3e+02 Score=31.72 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
-|+.+++.....+.+.|++++++..+|..++..++.+.+++
T Consensus 183 ~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~ 223 (447)
T KOG2751|consen 183 KELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERL 223 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777788888888888888888777776665553
No 399
>KOG0963|consensus
Probab=30.61 E-value=8.2e+02 Score=29.59 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
|-.+..+..+.+.+.+++++++..+.|+.-++.-..++.++++
T Consensus 182 e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s 224 (629)
T KOG0963|consen 182 EREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKS 224 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3344555666667777777788887777766666666555543
No 400
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=30.59 E-value=2.2e+02 Score=34.39 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDL 125 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~ 125 (760)
+|+..+|...-..+.+++.-+...+.|..|+
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~ 477 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQLVKEL 477 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344333333333433333333333333
No 401
>PRK04863 mukB cell division protein MukB; Provisional
Probab=30.53 E-value=4.8e+02 Score=35.11 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
+++....+....+|.++++.+++..++..++..+..++
T Consensus 376 eeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el 413 (1486)
T PRK04863 376 EQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRA 413 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444443333333
No 402
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=30.52 E-value=3.2e+02 Score=22.91 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhH
Q psy3725 80 QSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKD 129 (760)
Q Consensus 80 qsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~ 129 (760)
.++++.|++. +.+.--.+...+-.+|.+-++.+.+++.|..||+.++
T Consensus 13 kQ~~~eEL~k---vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 13 KQAIQEELTK---VKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666642 4555555666667777788888888888888877665
No 403
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=30.49 E-value=19 Score=26.75 Aligned_cols=20 Identities=35% Similarity=0.669 Sum_probs=13.0
Q ss_pred CeeeecCCCccccccccccc
Q psy3725 237 QGVVCDICGFACHLSCCDKV 256 (760)
Q Consensus 237 QG~~C~~C~~~cH~kC~~~v 256 (760)
+-++|..|++.+|..|....
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~ 22 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVS 22 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-S
T ss_pred ceEEeCCCCCcCChhhCCcc
Confidence 35789999999999996543
No 404
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=30.41 E-value=3.5e+02 Score=25.81 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=10.7
Q ss_pred HHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 110 EICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 110 ~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
+++..+....++..+++..+++++++
T Consensus 75 e~e~Y~~~~~~i~~~i~~~k~~ie~l 100 (139)
T PF05615_consen 75 ERENYEQLNEEIEQEIEQAKKEIEEL 100 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333
No 405
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=30.33 E-value=6.4e+02 Score=26.20 Aligned_cols=151 Identities=11% Similarity=0.173 Sum_probs=82.5
Q ss_pred EEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecC-ceEEEEEcCCeEEEEecCCCCceeecC----CC
Q psy3725 520 CLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSE-GRLCVGYQSGFSIYKFSQDNRPIPLIH----QD 594 (760)
Q Consensus 520 ~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~-~~LcVG~~~gF~ivdl~~~~~~~~Ll~----~~ 594 (760)
.|.||.-. -|++|+..... +.+++.-...+..|..+.+ +.|.|=+.+...+++|. .......-. +.
T Consensus 9 ~L~vGt~~----Gl~~~~~~~~~----~~~~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~-~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 9 RLLVGTED----GLYVYDLSDPS----KPTRILKLSSITQLSVLPELNLLLVLSDGQLYVYDLD-SLEPVSTSAPLAFPK 79 (275)
T ss_pred EEEEEECC----CEEEEEecCCc----cceeEeecceEEEEEEecccCEEEEEcCCccEEEEch-hhccccccccccccc
Confidence 57777643 48888872211 1122222223777888864 36667677777888886 222211100 00
Q ss_pred CCcccccccCCCCceEEEE----eCCCeEEEEecc--eEEEEcCC--CCc-ccccceecCCCCcEEEeeCCeEEEEeCCe
Q psy3725 595 NPLVSLLTYSPVDALLAIE----LPRGEFLLVFHS--LAAYVDSQ--GHK-SREKEIMYPALPTGASYMDGQLLIFSETH 665 (760)
Q Consensus 595 d~sl~f~~~~~~~pl~i~~----l~~~EfLLcy~~--~gvfVD~~--G~r-sR~~~I~W~~~P~~~ay~~PYLlvf~~~~ 665 (760)
..+... ..........|. .....+|.+.-. +-+|-=.. +.- ....++.-+..|.+++|...+|++-..+.
T Consensus 80 ~~~~~~-~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~ 158 (275)
T PF00780_consen 80 SRSLPT-KLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKG 158 (275)
T ss_pred cccccc-cccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCc
Confidence 000000 000111222222 123444544433 33332111 222 23457999999999999999999999999
Q ss_pred eEEEECcCCcEEEEE
Q psy3725 666 VDVFNAESGDWLQTV 680 (760)
Q Consensus 666 IEVr~i~tg~lVQtI 680 (760)
.++.++.++......
T Consensus 159 f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 159 FYLIDLNTGSPSELL 173 (275)
T ss_pred eEEEecCCCCceEEe
Confidence 999999988765544
No 406
>KOG0161|consensus
Probab=30.17 E-value=6.3e+02 Score=34.84 Aligned_cols=115 Identities=19% Similarity=0.188 Sum_probs=58.6
Q ss_pred hhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhhHHHHHHH
Q psy3725 7 KAGQEFRVSDEKDARSYLQALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQSSLNSE 86 (760)
Q Consensus 7 ~~~i~qwv~dek~ar~ylq~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~lqsal~~E 86 (760)
+.|+-.=..-|+.+|.-++-...|+..||--++.+-. . .....=..-+..|....++-.||+-++.|
T Consensus 1022 l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~----------~---~~~~~~el~~~l~kke~El~~l~~k~e~e 1088 (1930)
T KOG0161|consen 1022 LDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIE----------E---LKKQKEELDNQLKKKESELSQLQSKLEDE 1088 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----------H---HHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4444444555666777777666666666633333200 0 00000011223333445566666666666
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 87 IQAKTQISEELSKTRSELIAAQ-------KEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 87 i~akq~i~eeL~k~~~~~~~~e-------~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
-.....++.......+..-.++ ..+.++|++.++|.+|++.+++++++
T Consensus 1089 ~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1089 QAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEE 1143 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555555544444433333333 23445666777777777777777665
No 407
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=30.16 E-value=1.2e+02 Score=34.70 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=14.2
Q ss_pred HHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 112 CDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 112 ~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
++..++.++|..++..+++++++++.
T Consensus 72 ~~l~~~~~~l~~~~~~~~~~~~~~~~ 97 (418)
T TIGR00414 72 EEIKKELKELKEELTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666555555443
No 408
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=30.15 E-value=6.3e+02 Score=26.03 Aligned_cols=27 Identities=7% Similarity=0.283 Sum_probs=15.6
Q ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 111 ICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 111 l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
|+.++.+...+..++..|+.+-+.+..
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~q 114 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQ 114 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666555543
No 409
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=30.14 E-value=1.1e+02 Score=27.26 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKMESVS 122 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~ 122 (760)
.|..|+.|+|+.....+.+|++++++..++.
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888888877766543
No 410
>KOG1036|consensus
Probab=30.13 E-value=7.9e+02 Score=27.21 Aligned_cols=145 Identities=10% Similarity=0.193 Sum_probs=84.1
Q ss_pred eEEEEecCCCeEEEEEc-C------CCCCCceEEcC-CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCccee
Q psy3725 425 IYQMDYIPKEQLLVVLA-G------KQRYVQIARVG-DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWV 496 (760)
Q Consensus 425 i~Caa~~~~~rllvGTe-~------l~~~~~l~rv~-~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~ 496 (760)
++|.+..+...++.|+= | +.-. .-.+++ +.+.|.-|+..++.+.+|.= |=++.+.+.+...= .. .-
T Consensus 57 lL~c~F~d~~~~~~G~~dg~vr~~Dln~~-~~~~igth~~~i~ci~~~~~~~~vIsg-sWD~~ik~wD~R~~---~~-~~ 130 (323)
T KOG1036|consen 57 LLDCAFADESTIVTGGLDGQVRRYDLNTG-NEDQIGTHDEGIRCIEYSYEVGCVISG-SWDKTIKFWDPRNK---VV-VG 130 (323)
T ss_pred eeeeeccCCceEEEeccCceEEEEEecCC-cceeeccCCCceEEEEeeccCCeEEEc-ccCccEEEEecccc---cc-cc
Confidence 45555556667888865 2 2222 223344 45779999999888876553 23467888776420 00 01
Q ss_pred ecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEcCCe
Q psy3725 497 KIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSGF 576 (760)
Q Consensus 497 kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~gF 576 (760)
.+...| ..|++....+ .|+|++. .-+|++|.+......| -.+|=.+.....|++++++ ..||
T Consensus 131 ~~d~~k--kVy~~~v~g~-----~LvVg~~---~r~v~iyDLRn~~~~~-q~reS~lkyqtR~v~~~pn-------~eGy 192 (323)
T KOG1036|consen 131 TFDQGK--KVYCMDVSGN-----RLVVGTS---DRKVLIYDLRNLDEPF-QRRESSLKYQTRCVALVPN-------GEGY 192 (323)
T ss_pred ccccCc--eEEEEeccCC-----EEEEeec---CceEEEEEcccccchh-hhccccceeEEEEEEEecC-------CCce
Confidence 111122 4566655443 5777653 2389999986544333 3456666677778888875 2478
Q ss_pred EEEEecCCCCceeecCCC
Q psy3725 577 SIYKFSQDNRPIPLIHQD 594 (760)
Q Consensus 577 ~ivdl~~~~~~~~Ll~~~ 594 (760)
.+=+++| -...+.+|+.
T Consensus 193 ~~sSieG-RVavE~~d~s 209 (323)
T KOG1036|consen 193 VVSSIEG-RVAVEYFDDS 209 (323)
T ss_pred EEEeecc-eEEEEccCCc
Confidence 8778864 2335667654
No 411
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=30.10 E-value=6.6e+02 Score=27.14 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=30.9
Q ss_pred hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHHHHHhc
Q psy3725 4 LASKAGQEFRVSDE--KDARSYLQALTTKTTQELEYLKHA 41 (760)
Q Consensus 4 ~~~~~~i~qwv~de--k~ar~ylq~la~k~~~ele~lr~~ 41 (760)
++++.+|+..-++. ++|++-||....||..++..|...
T Consensus 50 ~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~q 89 (258)
T PF15397_consen 50 YRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQ 89 (258)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46677777776665 799999999999999999888764
No 412
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=30.08 E-value=7.8e+02 Score=27.13 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=45.3
Q ss_pred HhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 76 LLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 76 ~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
...++...+.-.+-+..++.|++++-...--+|+-=+|..++|..|..|...+.++-++
T Consensus 45 ~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~ 103 (309)
T PF09728_consen 45 LKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEE 103 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777888999999888887777777788888888888888777666554
No 413
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=30.04 E-value=2.8e+02 Score=28.41 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=17.0
Q ss_pred HHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy3725 75 ELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKM 118 (760)
Q Consensus 75 ~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~ 118 (760)
..++-.-.++.+|..+ ..|+.+.-.....+|.++-+.+.+.
T Consensus 107 ~~~e~~k~le~~~~~~---~~~~~~~e~~i~~Le~ki~el~~~~ 147 (190)
T PF05266_consen 107 KLLEERKKLEKKIEEK---EAELKELESEIKELEMKILELQRQA 147 (190)
T ss_pred HHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455444 1123333333444444444444443
No 414
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=29.92 E-value=2.4e+02 Score=25.59 Aligned_cols=26 Identities=15% Similarity=0.413 Sum_probs=14.6
Q ss_pred HHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 109 KEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 109 ~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
.+.++.+++..++..+++.+..++.+
T Consensus 74 ~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 74 AEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666656556555544
No 415
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=29.85 E-value=2.9e+02 Score=28.31 Aligned_cols=64 Identities=20% Similarity=0.231 Sum_probs=39.1
Q ss_pred cchhhHHHHHHHhhhHHHHHHHHHHHHhhHHHH--------HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhH
Q psy3725 65 DRRSQKLEKMELLNLQSSLNSEIQAKTQISEEL--------SKTRSELIAAQKEICDFRLKMESVSMDLRRKD 129 (760)
Q Consensus 65 ~rr~~k~~~~~~l~lqsal~~Ei~akq~i~eeL--------~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~ 129 (760)
++|.| -|..|+.+|=--||.+-+-=..+.-|- .-+|.+.-..++||++.|.+.++|.+|--.||
T Consensus 64 NqkLq-edNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLK 135 (195)
T PF10226_consen 64 NQKLQ-EDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELK 135 (195)
T ss_pred HHHHH-HHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45555 356677777777777554222244442 22455555677888888888888777655444
No 416
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=29.77 E-value=3e+02 Score=30.80 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=4.3
Q ss_pred CCCcceEEEe
Q psy3725 371 PGTKNHTLML 380 (760)
Q Consensus 371 ~~~~~~l~Ll 380 (760)
||......+.
T Consensus 389 ~Gm~~~v~i~ 398 (423)
T TIGR01843 389 PGMPVTADIK 398 (423)
T ss_pred CCCEEEEEEE
Confidence 4444444444
No 417
>COG5570 Uncharacterized small protein [Function unknown]
Probab=29.76 E-value=87 Score=25.40 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=5.6
Q ss_pred HHHHHHHHhHHHHHH
Q psy3725 109 KEICDFRLKMESVSM 123 (760)
Q Consensus 109 ~~l~e~e~~~~~l~~ 123 (760)
+.|.+.+++...|.+
T Consensus 5 shl~eL~kkHg~le~ 19 (57)
T COG5570 5 SHLAELEKKHGNLER 19 (57)
T ss_pred HHHHHHHHhhchHHH
Confidence 333333333333333
No 418
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=29.69 E-value=2.1e+02 Score=26.68 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 99 KTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 99 k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
.+-+...++...+.+.-..|.+|..|.++|++.+.++.
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334445556788888899999999999999988765
No 419
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=29.64 E-value=95 Score=31.32 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=16.8
Q ss_pred HHHHhhHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 88 QAKTQISEELSKTRSELIAA-QKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 88 ~akq~i~eeL~k~~~~~~~~-e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
-+.++||.||..+++.+-+. +.-..|.+.++++|..|+++++.-.
T Consensus 98 ncs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~ 143 (171)
T PF04799_consen 98 NCSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQ 143 (171)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888777665432 2334445555555555555554433
No 420
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=29.61 E-value=4.5e+02 Score=24.19 Aligned_cols=70 Identities=16% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhHHHHHHH-------------------HHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 72 EKMELLNLQSSLNSEIQAKTQISEELSKT-------------------RSELIAAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 72 ~~~~~l~lqsal~~Ei~akq~i~eeL~k~-------------------~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
+......--+.|+.+++==..+-+||..+ ..+.-..+.++...+...+.|...++.+++++
T Consensus 18 ~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l 97 (110)
T TIGR02338 18 QLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQL 97 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhcc
Q psy3725 133 KELQSRLES 141 (760)
Q Consensus 133 ~~l~~~~~~ 141 (760)
++++.+++.
T Consensus 98 ~e~q~~l~~ 106 (110)
T TIGR02338 98 KELQEKIQE 106 (110)
T ss_pred HHHHHHHHH
No 421
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=29.50 E-value=5.5e+02 Score=32.84 Aligned_cols=7 Identities=0% Similarity=0.003 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy3725 390 WVVALSE 396 (760)
Q Consensus 390 Wv~~L~~ 396 (760)
+..+++.
T Consensus 1005 L~~~~~~ 1011 (1179)
T TIGR02168 1005 LTAQKED 1011 (1179)
T ss_pred HHHHHHH
Confidence 3333333
No 422
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=29.43 E-value=1.1e+02 Score=24.85 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=20.8
Q ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 111 ICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 111 l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
-..+++++.+|..|...|+.+++-+|
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45578889999999999998887554
No 423
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=29.43 E-value=1.8e+02 Score=32.94 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3725 93 ISEELSKTRSELIAAQKEICDFRLK 117 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~~l~e~e~~ 117 (760)
||+|++..-.++..+.+||++++++
T Consensus 7 lq~e~~~~E~qL~~a~qkl~da~~~ 31 (428)
T PF00846_consen 7 LQEEITQHEQQLVIARQKLKDAEKQ 31 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555554443
No 424
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=29.41 E-value=89 Score=26.04 Aligned_cols=28 Identities=7% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhH
Q psy3725 102 SELIAAQKEICDFRLKMESVSMDLRRKD 129 (760)
Q Consensus 102 ~~~~~~e~~l~e~e~~~~~l~~e~~~l~ 129 (760)
.++-.+|++|+++|+|.+.-+.++...+
T Consensus 32 qRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 32 QRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 425
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=29.27 E-value=2.7e+02 Score=30.14 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 93 ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
+++++.+++....+.+++-...+.+++--..|+|+-
T Consensus 174 ~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~ 209 (267)
T PF10234_consen 174 VQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERN 209 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333333333333333333
No 426
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=29.11 E-value=18 Score=45.25 Aligned_cols=68 Identities=18% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhcc
Q psy3725 74 MELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLES 141 (760)
Q Consensus 74 ~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~~ 141 (760)
+.+-+++..|+.|.++|+.++..|..+..++-.+...|.+-..--.+|..++.++..++.+++.+++.
T Consensus 243 ~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~ 310 (859)
T PF01576_consen 243 SQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEE 310 (859)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45667999999999999999999998888888777777766555666666677777777666655443
No 427
>PRK02224 chromosome segregation protein; Provisional
Probab=28.99 E-value=6.6e+02 Score=31.47 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q psy3725 18 KDARSYLQALTTKTTQELEYLKH 40 (760)
Q Consensus 18 k~ar~ylq~la~k~~~ele~lr~ 40 (760)
+++|.-++.+.+.+.+.++.|+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~ 194 (880)
T PRK02224 172 SDARLGVERVLSDQRGSLDQLKA 194 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455555555555553
No 428
>KOG3119|consensus
Probab=28.95 E-value=2.5e+02 Score=30.35 Aligned_cols=33 Identities=9% Similarity=0.190 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 104 LIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 104 ~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+..+..+..++++.|..|..+++.|++|+..++
T Consensus 217 ~~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 217 EDEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888888888888887765
No 429
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=28.90 E-value=2.7e+02 Score=30.25 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=43.4
Q ss_pred HHHHhhhHHHHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 73 KMELLNLQSSLNSEIQAKTQISEELSKTRS------ELIAAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 73 ~~~~l~lqsal~~Ei~akq~i~eeL~k~~~------~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
...+.+.+.+|+---.-|+.|++|+.+++. .+..+|++|..+|+.+.....++...+.+.
T Consensus 130 LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~ 195 (271)
T PF13805_consen 130 LKSIRNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQK 195 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Confidence 345677778888877788889999988875 346677777777777777777776665543
No 430
>KOG0300|consensus
Probab=28.85 E-value=4.3e+02 Score=29.39 Aligned_cols=65 Identities=9% Similarity=0.168 Sum_probs=45.2
Q ss_pred CCeeEEEEecCCCeEEEEEc-------CCCCC-CceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCC
Q psy3725 422 TKKIYQMDYIPKEQLLVVLA-------GKQRY-VQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRA 487 (760)
Q Consensus 422 ~~~i~Caa~~~~~rllvGTe-------~l~~~-~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~ 487 (760)
...|.++....+++++-|.| ++..- ..+..|.-..++-.|.|-....++.+=-| +|+|++|+|..
T Consensus 357 tdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhD-NRqvRlfDlnG 429 (481)
T KOG0300|consen 357 TDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHD-NRQVRLFDLNG 429 (481)
T ss_pred ccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccC-CceEEEEecCC
Confidence 45677777656788999998 12211 24555555578899999877666555555 89999999965
No 431
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=28.85 E-value=1.2e+02 Score=28.59 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHH---HHHHHhhhccC
Q psy3725 106 AAQKEICDFRLKMESVSMDLRRKDSQ---LKELQSRLESG 142 (760)
Q Consensus 106 ~~e~~l~e~e~~~~~l~~e~~~l~~e---~~~l~~~~~~g 142 (760)
+.++++....+++..|.+|++.|+.+ ++| +.|.+-|
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e-~AR~~l~ 99 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDGRDYIEE-RARSELG 99 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHhC
Confidence 56777888888888888888888888 444 3344444
No 432
>KOG4196|consensus
Probab=28.84 E-value=87 Score=30.09 Aligned_cols=24 Identities=4% Similarity=0.184 Sum_probs=14.3
Q ss_pred HHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 113 DFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 113 e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+.|+++.+|+.|+++|+.|..+++
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~ 101 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLR 101 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666665554
No 433
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=28.71 E-value=1.7e+02 Score=31.88 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 81 SSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 81 sal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
...-..+...+.+.+|-.+.|.++..++.+++. +.+++++|.++|++.++
T Consensus 59 ~~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 59 DGISENLKDVNNLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 344445555556666666555555544333332 33446677777766653
No 434
>KOG0978|consensus
Probab=28.69 E-value=5.8e+02 Score=31.39 Aligned_cols=21 Identities=38% Similarity=0.404 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhc
Q psy3725 18 KDARSYLQALTTKTTQELEYLKHA 41 (760)
Q Consensus 18 k~ar~ylq~la~k~~~ele~lr~~ 41 (760)
|+.++.|| .|..-|+|+|++-
T Consensus 388 ke~~~~~~---~ka~~E~e~l~q~ 408 (698)
T KOG0978|consen 388 KEQRDKLQ---VKARAETESLLQR 408 (698)
T ss_pred HHHHhHHH---HHHHHHHHHHHHH
Confidence 45566666 4556677777653
No 435
>KOG4532|consensus
Probab=28.65 E-value=8.1e+02 Score=26.84 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=39.7
Q ss_pred EEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecC-ceEEEEEcCCe-EEEEec
Q psy3725 520 CLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSE-GRLCVGYQSGF-SIYKFS 582 (760)
Q Consensus 520 ~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~-~~LcVG~~~gF-~ivdl~ 582 (760)
..||.--+ +|+.|++++....+.++.|-...+.--+.+|... ....||++.|+ .++|+.
T Consensus 173 ~~~Vgds~----~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR 233 (344)
T KOG4532|consen 173 GSSVGDSR----RVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVR 233 (344)
T ss_pred EEEecCCC----cceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEec
Confidence 45555544 8999999887666666555555555555666643 38889998874 577885
No 436
>KOG4552|consensus
Probab=28.63 E-value=2.5e+02 Score=29.22 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=22.0
Q ss_pred cchhhHHHHH----HHhhhHHHHHHHHHHHHhhHHHHHHH
Q psy3725 65 DRRSQKLEKM----ELLNLQSSLNSEIQAKTQISEELSKT 100 (760)
Q Consensus 65 ~rr~~k~~~~----~~l~lqsal~~Ei~akq~i~eeL~k~ 100 (760)
+||.||+-+- ..|+|--+-|.|++---.+.+|-.|+
T Consensus 33 ~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llkla~eq~k~ 72 (272)
T KOG4552|consen 33 NRDKQKMLKNGETVNILKLLDSKDDEFKTLLKLAPEQQKR 72 (272)
T ss_pred hhhHHHHHhcchHHHHHHHHHhccHHHHHHHHHhHhHHHH
Confidence 4556666443 56777777788886555555554444
No 437
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.44 E-value=1.4e+02 Score=24.55 Aligned_cols=28 Identities=7% Similarity=0.218 Sum_probs=11.3
Q ss_pred HHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 108 QKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 108 e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
|+++...+.....++.|++.+++.++++
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443333444444444444444433
No 438
>KOG2391|consensus
Probab=28.43 E-value=3.4e+02 Score=30.38 Aligned_cols=54 Identities=6% Similarity=0.108 Sum_probs=32.5
Q ss_pred HHHhhhHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q psy3725 74 MELLNLQSSLNSEIQ-AKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRR 127 (760)
Q Consensus 74 ~~~l~lqsal~~Ei~-akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~ 127 (760)
.|.++=++|++++|+ -++.|-+-.++.++...++|+++++..+..+-|..-++.
T Consensus 224 eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344555556666553 334455555666777777777777777777766654443
No 439
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=28.37 E-value=5.3e+02 Score=24.57 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 102 SELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 102 ~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
.+.-.++.++...++..+.|..++..+.+++++++
T Consensus 94 eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~ 128 (140)
T PRK03947 94 EAIEILDKRKEELEKALEKLEEALQKLASRIAQLA 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666666666666554
No 440
>KOG0999|consensus
Probab=28.08 E-value=3.8e+02 Score=31.89 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 94 SEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 94 ~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
.-||+.+++.+..++++-++...-+..+..+--+|+.|++|.+
T Consensus 120 r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~K 162 (772)
T KOG0999|consen 120 RQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYK 162 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Confidence 4588889999999998888888888888888888888888866
No 441
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=27.99 E-value=4e+02 Score=31.30 Aligned_cols=18 Identities=6% Similarity=0.006 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3725 96 ELSKTRSELIAAQKEICD 113 (760)
Q Consensus 96 eL~k~~~~~~~~e~~l~e 113 (760)
++....+.+..++.+|.+
T Consensus 75 ~~~~~~~~~~~l~~~le~ 92 (475)
T PRK10361 75 INTSLEADLREVTTRMEA 92 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333334433333
No 442
>KOG0294|consensus
Probab=27.96 E-value=8.8e+02 Score=27.06 Aligned_cols=135 Identities=16% Similarity=0.193 Sum_probs=77.6
Q ss_pred EEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCc-eEEEEEcCCeEEEEecCCCCceeecCCCCCccc
Q psy3725 521 LALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG-RLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVS 599 (760)
Q Consensus 521 LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~-~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~ 599 (760)
|+.+|.+ --.+..|++-+++..|. ..+...+..+.|.+.| +..|+.+.+-.+|.++ +.....
T Consensus 141 LALsVg~--D~~lr~WNLV~Gr~a~v----~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d-~A~v~~---------- 203 (362)
T KOG0294|consen 141 LALSVGG--DQVLRTWNLVRGRVAFV----LNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLD-NASVFR---------- 203 (362)
T ss_pred eEEEEcC--CceeeeehhhcCcccee----eccCCcceeeEEcCCCCEEEEEeccEEEEEecc-cHhHhh----------
Confidence 5555543 22667799877765543 4455666668898765 6899999888888886 332221
Q ss_pred ccccCCCCceEEEEeCCCeEEEEecceEEE-EcCCCCccccc-ceecCCCCcEEE-eeCC---eEEEEe-CCeeEEEECc
Q psy3725 600 LLTYSPVDALLAIELPRGEFLLVFHSLAAY-VDSQGHKSREK-EIMYPALPTGAS-YMDG---QLLIFS-ETHVDVFNAE 672 (760)
Q Consensus 600 f~~~~~~~pl~i~~l~~~EfLLcy~~~gvf-VD~~G~rsR~~-~I~W~~~P~~~a-y~~P---YLlvf~-~~~IEVr~i~ 672 (760)
+.. .+.+++++.-+..++++..-|+-.|- -|.+. .+-.. .+-=+..-.+|+ |..| ||+-.+ +.+|-|++++
T Consensus 204 ~i~-~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 204 EIE-NPKRILCATFLDGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred hhh-ccccceeeeecCCceEEEecCCceEEEeccCC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 111 13456777777666666666654443 23332 11111 122223334555 5554 555444 5579999998
Q ss_pred CC
Q psy3725 673 SG 674 (760)
Q Consensus 673 tg 674 (760)
..
T Consensus 282 ~~ 283 (362)
T KOG0294|consen 282 ME 283 (362)
T ss_pred cc
Confidence 66
No 443
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.91 E-value=1.2e+02 Score=33.89 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=26.5
Q ss_pred HHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 75 ELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 75 ~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
++-+++..|+.--..=+..+++|.++.+.+..++.+++++.++...|..+++.....+
T Consensus 222 ~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 222 KLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKL 279 (344)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334444444433333344445555554444455555554444444444444444433
No 444
>PRK02793 phi X174 lysis protein; Provisional
Probab=27.89 E-value=2.9e+02 Score=23.80 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=23.3
Q ss_pred HHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 73 KMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 73 ~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
+...||.+-|.+... -|||+++ +-+-.+++..|.+++..|..++++
T Consensus 9 Ri~~LE~~lafQe~t------Ie~Ln~~----------v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 9 RLAELESRLAFQEIT------IEELNVT----------VTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555544433 4566655 222334455666666666666554
No 445
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=27.85 E-value=5.1e+02 Score=31.00 Aligned_cols=152 Identities=18% Similarity=0.222 Sum_probs=68.7
Q ss_pred hhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCCC-CcCCCCCCCCCCcccchhhHH-HHH--HHhhhH
Q psy3725 6 SKAGQEFRVSDEKDARSYLQALTTKTTQELEYLKHASS-LGGPGVG-TVPGVGGPGDKNWRDRRSQKL-EKM--ELLNLQ 80 (760)
Q Consensus 6 ~~~~i~qwv~dek~ar~ylq~la~k~~~ele~lr~~~~-~~~~~~~-~~~~~~~~~~~~w~~rr~~k~-~~~--~~l~lq 80 (760)
.|..+.+=+.-|-+||.|.+..-..+.+-|+.++..-. +.. -.. ......-..+..+..|-.++. +.. ..-.++
T Consensus 286 ~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~-e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~ 364 (560)
T PF06160_consen 286 RIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE-ELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLE 364 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556677889998877666655554444443200 000 000 000022222222344433321 110 111222
Q ss_pred HHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhccCCCCCCCCcccc
Q psy3725 81 SSLNSEIQAKTQISEE-------LSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLESGDILERPASQIS 153 (760)
Q Consensus 81 sal~~Ei~akq~i~ee-------L~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~~g~~~~~~~s~~~ 153 (760)
.++++.-.+=-.|.++ |..+......+...|+..++.-.+....+..++.++.++++++++--+|.-+++
T Consensus 365 ~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~--- 441 (560)
T PF06160_consen 365 ERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPED--- 441 (560)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHH---
Confidence 2222222222233344 444444444444445555555555555666667777777766765446665566
Q ss_pred cccccccc
Q psy3725 154 YLDHFLKE 161 (760)
Q Consensus 154 ~~~~~~~~ 161 (760)
|+.+|...
T Consensus 442 y~~~~~~~ 449 (560)
T PF06160_consen 442 YLDYFFDV 449 (560)
T ss_pred HHHHHHHH
Confidence 66655433
No 446
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.77 E-value=4.9e+02 Score=33.02 Aligned_cols=58 Identities=19% Similarity=0.388 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 78 NLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 78 ~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
+++..+++.+.-+..+.+++.+..+.......++.++..+..++..+.+.+...++++
T Consensus 372 ~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~ 429 (908)
T COG0419 372 ELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEEL 429 (908)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445556666666666666666666666666666555555555555543
No 447
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=27.60 E-value=2.3e+02 Score=35.01 Aligned_cols=58 Identities=24% Similarity=0.333 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHHHhhhHHHHHHHH
Q psy3725 79 LQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKM---------ESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 79 lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~---------~~l~~e~~~l~~e~~~l~ 136 (760)
++...+.--+|.+-|.++|..++.++..+|.+|++.++++ +.+..++..++.++.+++
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~ 324 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELT 324 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566788899999999999999999999988875 234444555555554433
No 448
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=27.23 E-value=4.3e+02 Score=25.85 Aligned_cols=41 Identities=32% Similarity=0.452 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
+|+..+...+-.++.+|....+....|..+++.++.++.+|
T Consensus 59 ~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 59 EELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444444444443
No 449
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=27.03 E-value=3.1e+02 Score=33.25 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=39.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 88 QAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 88 ~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+.=+.|++.+.++......++.+|+.+++..+++..|++.|+++.++++
T Consensus 45 ~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~ 93 (618)
T PF06419_consen 45 RQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELE 93 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777777777777888889999999999999999998888765
No 450
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=26.93 E-value=2e+02 Score=30.37 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 96 ELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 96 eL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
|+.+.+..|--.-+.+.|.+.+.+....+.++++..+++
T Consensus 44 e~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 44 EIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444444443
No 451
>KOG0957|consensus
Probab=26.88 E-value=45 Score=38.55 Aligned_cols=74 Identities=22% Similarity=0.306 Sum_probs=0.0
Q ss_pred cccccCCCCCCCCCCCCCcccccCCCcccccccccccccCCCCCCCceeEEeeecCCcccCCCcccccccccCeeeecCC
Q psy3725 165 TGSVESEDGDIEDNRVPSIASSRSNLSELTIDQMNNMLRHDRSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDIC 244 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C 244 (760)
++..++.+.....+.+-+-.++.+..|...+.+-.......... .|-+|.+--.--..-.++|..|
T Consensus 77 ~~eee~e~eENgen~a~saaasspaapvv~~ape~~~Sapkk~~--------------iCcVClg~rs~da~ei~qCd~C 142 (707)
T KOG0957|consen 77 SDEEESEDEENGENEAESAAASSPAAPVVERAPERTPSAPKKAV--------------ICCVCLGQRSVDAGEILQCDKC 142 (707)
T ss_pred hhcccCCchhccchhhhhhhccCCCCCccCCCcccccCccccce--------------EEEEeecCccccccceeecccc
Q ss_pred Cccccccc
Q psy3725 245 GFACHLSC 252 (760)
Q Consensus 245 ~~~cH~kC 252 (760)
|.++|..|
T Consensus 143 Gi~VHEgC 150 (707)
T KOG0957|consen 143 GINVHEGC 150 (707)
T ss_pred Cceecccc
No 452
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=26.77 E-value=3.3e+02 Score=30.25 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=34.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 90 KTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 90 kq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+..+..-|...|.+|..++.++.+.+++..|++.+++-|++.+...+
T Consensus 67 ~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 67 NKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 34555667778888888888888888888888888888877776543
No 453
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=26.73 E-value=5.6e+02 Score=26.27 Aligned_cols=65 Identities=23% Similarity=0.297 Sum_probs=40.5
Q ss_pred HhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 76 LLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 76 ~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
+-.-|.+.++=.++-+....++..++..+-.+...|...+.-......|+..+...++..+.|.+
T Consensus 90 L~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve 154 (188)
T PF05335_consen 90 LQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVE 154 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666666666777777777666666666666666666666666666665554443
No 454
>PF03082 MAGSP: Male accessory gland secretory protein; InterPro: IPR004315 The accessory gland of male insects is a genital tissue that secretes many components of the ejaculatory fluid, some of which affect the female's receptivity to courtship and her rate of oviposition. The protein is expressed exclusively in the male accessory glands of adult Drosophila melanogaster. During copulation it is transferred to the female genital tract where it is rapidly altered [].; GO: 0007618 mating, 0005576 extracellular region
Probab=26.65 E-value=70 Score=33.15 Aligned_cols=51 Identities=24% Similarity=0.353 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHH
Q psy3725 78 NLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQ 131 (760)
Q Consensus 78 ~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e 131 (760)
+.-.+|-.||.||.. |.-+.|-.|+.+|-+|.++.-++-||..|++.-++-
T Consensus 145 N~SV~LM~Eie~rK~---eIl~~Rq~NldLE~eLndanRkilElNlqlqdaRks 195 (264)
T PF03082_consen 145 NISVALMKEIEARKT---EILKARQSNLDLELELNDANRKILELNLQLQDARKS 195 (264)
T ss_pred hhHHHHHHHHHHHHH---HHHHHHhhCCceeeehhHHHHHHHHHHHHHHHhhcc
Confidence 444577888888865 788899999999999999999999988777655444
No 455
>PF15408 PH_7: Pleckstrin homology domain
Probab=26.64 E-value=43 Score=29.89 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=46.8
Q ss_pred ceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCC-ccceeeeeecccCCCCCCcce
Q psy3725 298 GWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKK-DIPCIFRITTSLMDPPGTKNH 376 (760)
Q Consensus 298 gw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~-dip~if~it~s~l~~~~~~~~ 376 (760)
.-+|+|+++.+..+-+|.-.++- .--.+.|+...+++-=|.-++ |... .|- -|.+-. ..|. +..
T Consensus 11 si~rRF~~L~~K~~~~~~~KGG~-------~L~sF~L~~s~~s~Pm~~~~~---A~~N~Gi~-A~G~L~---~~~~-~~~ 75 (104)
T PF15408_consen 11 SIQRRFVMLRSKQFNMYEDKGGQ-------YLCSFQLSSSVVSHPMVNFSQ---AVPNLGIN-AFGFLM---YSPS-RRH 75 (104)
T ss_pred hHHHHHHhhhhceeEEecccCCc-------eeeeeehhhhhhhcccccccc---cCCCCCee-EEEEEE---ecCC-cch
Confidence 45688999998876666533321 122334444333331122221 2222 121 223321 1233 467
Q ss_pred EEEeeCCHHHHHHHHHHHHHHH
Q psy3725 377 TLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 377 l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
+-++|+|....++|+++++.-.
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s 97 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPS 97 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChh
Confidence 8899999999999999987543
No 456
>KOG3881|consensus
Probab=26.62 E-value=3.8e+02 Score=30.50 Aligned_cols=122 Identities=11% Similarity=0.147 Sum_probs=67.1
Q ss_pred ceEEEEecCc--eEEEEEc--CCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEEEecc--eEEEE
Q psy3725 557 AQCIHIFSEG--RLCVGYQ--SGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVFHS--LAAYV 630 (760)
Q Consensus 557 ~~sl~~~~~~--~LcVG~~--~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~~--~gvfV 630 (760)
+.+|.|-.++ -+.+|+. ..|...+++ ++...+-++..+.. . .+..|+.=....++-+++|-+. .-+.-
T Consensus 58 is~l~~~~d~~tevl~~r~~~~~~~~~~~~-E~~~~s~~~~~~~~-~----l~~~~I~gl~~~dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 58 ISSLLFGVDGETEVLNARSADDDLPKFVIE-EFEISSSLDDAKTV-S----LGTKSIKGLKLADGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhheeecCCceeEeeccccCccccccccc-CCcccccccccccc-c----cccccccchhhcCCEEEEEecCCcEEEEe
Confidence 4455665443 6667772 335555554 44333333211111 1 1223332222346667777643 33445
Q ss_pred cCCCCcccccceecCCCCcEEEe----eCCeEEEEeC----CeeEEEECcCCcEEEEEecCCce
Q psy3725 631 DSQGHKSREKEIMYPALPTGASY----MDGQLLIFSE----THVDVFNAESGDWLQTVNIRRAL 686 (760)
Q Consensus 631 D~~G~rsR~~~I~W~~~P~~~ay----~~PYLlvf~~----~~IEVr~i~tg~lVQtI~~~~ir 686 (760)
++.|.-....-++|-..|.-... ..|||+++.- +-++|++.+++ .|+-..++++
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvp 193 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVP 193 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCC
Confidence 56666553334777655554443 3689999974 56899999988 7887666643
No 457
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=26.51 E-value=2.4e+02 Score=27.24 Aligned_cols=49 Identities=14% Similarity=0.303 Sum_probs=25.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 88 QAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 88 ~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
++++.+..+...+-..|++.+.+|.+.+.+..++..++..|+.+..++.
T Consensus 34 ~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~ 82 (150)
T PF07200_consen 34 QEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKE 82 (150)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555666666666666666666666666666555543
No 458
>KOG0577|consensus
Probab=26.50 E-value=6.5e+02 Score=30.65 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc
Q psy3725 17 EKDARSYLQALTTKTTQELEYLKHA 41 (760)
Q Consensus 17 ek~ar~ylq~la~k~~~ele~lr~~ 41 (760)
|.--++-...+-+||-.|||.||+.
T Consensus 507 E~r~k~e~eehr~~ldrEle~~~~~ 531 (948)
T KOG0577|consen 507 EERLKGEREEHRARLDRELETLRAN 531 (948)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 4445666677788888999999975
No 459
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.39 E-value=6.6e+02 Score=33.32 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=10.5
Q ss_pred HHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 112 CDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 112 ~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
.+.+.++.+|..+++.+..++++
T Consensus 884 ~~le~~L~el~~el~~l~~~~~~ 906 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREIKD 906 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 460
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=26.38 E-value=47 Score=25.98 Aligned_cols=27 Identities=22% Similarity=0.716 Sum_probs=18.7
Q ss_pred ccCCCccccccc-cc--CeeeecCCCcccc
Q psy3725 223 KCNHCTSLMVGL-TR--QGVVCDICGFACH 249 (760)
Q Consensus 223 ~C~~C~~~i~Gl-~r--QG~~C~~C~~~cH 249 (760)
||..|+.+|..- .. .-+.|..|++...
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~~~~ 31 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGYEEP 31 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCCeEE
Confidence 799999977542 21 2478999997543
No 461
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.22 E-value=58 Score=38.04 Aligned_cols=27 Identities=7% Similarity=0.195 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 107 AQKEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 107 ~e~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
+++|++++++|+++|++|++.++++++
T Consensus 29 ~~qkie~L~kql~~Lk~q~~~l~~~v~ 55 (489)
T PF11853_consen 29 LLQKIEALKKQLEELKAQQDDLNDRVD 55 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccc
Confidence 334555555555555555555544443
No 462
>PRK04863 mukB cell division protein MukB; Provisional
Probab=26.02 E-value=7.8e+02 Score=33.22 Aligned_cols=28 Identities=11% Similarity=0.020 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 107 AQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 107 ~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
++.++.+.+.+..++..+++.++.+++.
T Consensus 447 F~aklee~e~qL~elE~kL~~lea~leq 474 (1486)
T PRK04863 447 FQAKEQEATEELLSLEQKLSVAQAAHSQ 474 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 463
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=25.97 E-value=2.8e+02 Score=31.20 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhh
Q psy3725 83 LNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRL 139 (760)
Q Consensus 83 l~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~ 139 (760)
|+-|...|..+.+++.+...+...++++.+..++.+..|...++.+.+-.+-+|..+
T Consensus 96 L~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 96 LEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 455677777777777777777777777777777777777777777777776666433
No 464
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.79 E-value=3.2e+02 Score=31.96 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=11.9
Q ss_pred HHhHHHHHHHHhhhHHHHHHHHhhh
Q psy3725 115 RLKMESVSMDLRRKDSQLKELQSRL 139 (760)
Q Consensus 115 e~~~~~l~~e~~~l~~e~~~l~~~~ 139 (760)
+++.+.|..|..++...+.+|+.|+
T Consensus 115 ~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 115 TKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555444
No 465
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=25.64 E-value=8.8e+02 Score=28.74 Aligned_cols=45 Identities=27% Similarity=0.474 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 93 ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
+..||..++..+-.+..++.....-...|..|+++.+.++..++.
T Consensus 286 ~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke 330 (522)
T PF05701_consen 286 AKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKE 330 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666666666666666666553
No 466
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=25.64 E-value=1.7e+02 Score=33.09 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 94 SEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 94 ~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
.+++.+.+..+..++.++++.+.....+..++++++++++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 7 EERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555566666777777777777777777777776544
No 467
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=25.57 E-value=2.8e+02 Score=26.30 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=48.1
Q ss_pred eeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeee
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFR 362 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~ 362 (760)
.||||-=.-. ..+-|+|.|-+|+...|-+|-.+.+. .+-..|.| .|..+|.+...+ .. ..+.-|..|.
T Consensus 2 kEGWmVHyT~--~d~~rKRhYWrLDsK~Itlf~~e~~s------kyyKeIPL-sEIl~V~~~~~~-~~--~~~~~~hcFE 69 (117)
T cd01239 2 KEGWMVHYTS--SDNRRKKHYWRLDSKAITLYQEESGS------RYYKEIPL-AEILSVSSNNGD-SV--LAKHPPHCFE 69 (117)
T ss_pred ccceEEEEec--CccceeeeEEEecCCeEEEEEcCCCC------eeeEEeeh-HHheEEeccCCC-cC--CCCCCCcEEE
Confidence 4789842221 12679999999999999999764422 24567777 667777653322 21 2356678899
Q ss_pred eecccC
Q psy3725 363 ITTSLM 368 (760)
Q Consensus 363 it~s~l 368 (760)
|.++.+
T Consensus 70 i~T~~~ 75 (117)
T cd01239 70 IRTTTN 75 (117)
T ss_pred EEecCE
Confidence 977654
No 468
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=25.57 E-value=2.6e+02 Score=23.50 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 81 SSLNSEIQAKTQISEELSKTRSELIAAQKE-ICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 81 sal~~Ei~akq~i~eeL~k~~~~~~~~e~~-l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
+.|+.+|.=-..|-+-..++...+-.-... +.+++.+..+-...|+.|+.++++++.
T Consensus 4 ~~L~~~i~~E~ki~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 4 EELQKKIDKELKIKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666655222234 788999999999999999999998773
No 469
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=25.51 E-value=3.8e+02 Score=30.34 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=13.2
Q ss_pred HhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 116 LKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 116 ~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
++.+++.++|+...+++++++.++.
T Consensus 342 ~e~~~~n~~Le~~~~~l~~~e~~l~ 366 (373)
T COG5019 342 EERKELNSKLEEIQKKLEDLEKRLE 366 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443
No 470
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=25.49 E-value=2.1e+02 Score=26.74 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=20.3
Q ss_pred HHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 111 ICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 111 l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
.+.+.+||..|..+|+..++.++
T Consensus 47 ~~~A~kRN~~LLqDie~~eksLq 69 (109)
T PF15134_consen 47 SEAAKKRNKQLLQDIEAAEKSLQ 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56688999999999999999875
No 471
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=25.48 E-value=2.3e+02 Score=36.80 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=35.3
Q ss_pred HHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 74 MELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 74 ~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
.++.+|+..|+..-+++...++.+.+..+.....|.--++.++++.+|..|++.|+.+..+
T Consensus 149 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (1123)
T PRK11448 149 QEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAE 209 (1123)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666555555555555555544444444444556677777777777777666544
No 472
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=25.46 E-value=2.8e+02 Score=30.84 Aligned_cols=48 Identities=17% Similarity=0.380 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 93 ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
.+++|...+..+...+.+|.+.+.+.++...|.+.+..+++..+.|++
T Consensus 233 ~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 233 AEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334445555555555555555555555555555555555555444443
No 473
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=25.45 E-value=1.8e+02 Score=33.19 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=18.0
Q ss_pred HHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 113 DFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 113 e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
..+++..++..+++.+++++++++.
T Consensus 270 k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 270 KKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777788888888777664
No 474
>KOG0282|consensus
Probab=25.43 E-value=1.9e+02 Score=33.67 Aligned_cols=191 Identities=8% Similarity=0.042 Sum_probs=0.0
Q ss_pred ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCc--eEEEEEcCCeEE
Q psy3725 501 TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG--RLCVGYQSGFSI 578 (760)
Q Consensus 501 tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~--~LcVG~~~gF~i 578 (760)
+||+++...-...+ +++|+..+.- +|++|+.-......+-|.--. .+|..+.|.+.| -|.+|+.+--.+
T Consensus 214 ~kgvsai~~fp~~~---hLlLS~gmD~----~vklW~vy~~~~~lrtf~gH~--k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 214 TKGVSAIQWFPKKG---HLLLSGGMDG----LVKLWNVYDDRRCLRTFKGHR--KPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred ccccchhhhcccee---eEEEecCCCc----eEEEEEEecCcceehhhhcch--hhhhhhhccccCCeeeeeecceeeee
Q ss_pred EEecCCCCceeecCCCCCcccccccCCCCc-eEEEEeCCCeEEEEecceEEEEcCCCCcccccceecCCCCcEEEeeCCe
Q psy3725 579 YKFSQDNRPIPLIHQDNPLVSLLTYSPVDA-LLAIELPRGEFLLVFHSLAAYVDSQGHKSREKEIMYPALPTGASYMDGQ 657 (760)
Q Consensus 579 vdl~~~~~~~~Ll~~~d~sl~f~~~~~~~p-l~i~~l~~~EfLLcy~~~gvfVD~~G~rsR~~~I~W~~~P~~~ay~~PY 657 (760)
.|.+ ++....-++ .|....-+...+.++ +-++-.++++++.-=.+-|-+|..+++-.+. --.-+.+....=|
T Consensus 285 wDtE-TG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~-----i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 285 WDTE-TGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA-----ILDITFVDEGRRF 357 (503)
T ss_pred eccc-cceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh-----eeeeEEccCCceE
Q ss_pred EEEEeCCeeEEEECcCCcEEEEE---ecCCceecC--CCCCEEEEecCCccEEEE
Q psy3725 658 LLIFSETHVDVFNAESGDWLQTV---NIRRALPLD--TRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 658 Llvf~~~~IEVr~i~tg~lVQtI---~~~~ir~L~--s~G~l~l~s~~~~~~~~~ 707 (760)
|....+..|-|++...+-.++-| ..-....+. ++|..+.+-.-+-...+|
T Consensus 358 issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~if 412 (503)
T KOG0282|consen 358 ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIF 412 (503)
T ss_pred eeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEE
No 475
>KOG0964|consensus
Probab=25.41 E-value=6.8e+02 Score=31.95 Aligned_cols=65 Identities=18% Similarity=0.370 Sum_probs=48.7
Q ss_pred HHHHhhhHHHHHHHHHHHHh-----------------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 73 KMELLNLQSSLNSEIQAKTQ-----------------ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 73 ~~~~l~lqsal~~Ei~akq~-----------------i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
.+++.-.-.+|++++-.|-- .+.||.-+++.+.+.+.+++++.++.++|..+|++++.+..++
T Consensus 808 r~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~ 887 (1200)
T KOG0964|consen 808 RIDIETRKTALEANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEI 887 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455566677766654432 2457888888888899999999999999999999888888776
Q ss_pred Hh
Q psy3725 136 QS 137 (760)
Q Consensus 136 ~~ 137 (760)
+.
T Consensus 888 ~~ 889 (1200)
T KOG0964|consen 888 KK 889 (1200)
T ss_pred HH
Confidence 64
No 476
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=25.35 E-value=3.2e+02 Score=25.56 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 99 KTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 99 k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
..-.....+=.++.+.+++..+|.+|-..|+-|.+-|+.|+.
T Consensus 12 ~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~ 53 (114)
T COG4467 12 NLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLG 53 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhC
Confidence 333334455567778888888888888888888888776655
No 477
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=25.28 E-value=4.4e+02 Score=22.70 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=29.9
Q ss_pred HHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 74 MELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 74 ~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
+|+-+||++....-++= ++..+..+...-.++.+......++..|...++.|..+++.
T Consensus 10 ~ale~Lq~~y~~q~~~W---q~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 10 SALEELQQSYEKQQQEW---QSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555554444333 23344444444445555555566666666666666665543
No 478
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=25.28 E-value=4.7e+02 Score=22.97 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=13.6
Q ss_pred HHHhHHHHHHHHhhhHHHHHHHHhhh
Q psy3725 114 FRLKMESVSMDLRRKDSQLKELQSRL 139 (760)
Q Consensus 114 ~e~~~~~l~~e~~~l~~e~~~l~~~~ 139 (760)
...+...+..+|..+...+..++.|+
T Consensus 62 y~~KL~~ikkrm~~l~~~l~~lk~R~ 87 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQKLKKRA 87 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555443
No 479
>KOG0996|consensus
Probab=25.27 E-value=4.1e+02 Score=34.42 Aligned_cols=90 Identities=19% Similarity=0.264 Sum_probs=0.0
Q ss_pred CCCcCCCCCCCCCCcccchhh---HHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy3725 49 VGTVPGVGGPGDKNWRDRRSQ---KLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDL 125 (760)
Q Consensus 49 ~~~~~~~~~~~~~~w~~rr~~---k~~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~ 125 (760)
+|+-+.|..+...+ ++-+.. =.++-+.-.|+.||+..-.+..++++++.+.-.....+.-+..+++-+.+.+..++
T Consensus 751 SGtmtGGG~~v~~g-~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~ 829 (1293)
T KOG0996|consen 751 SGTMTGGGKKVKGG-RMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASV 829 (1293)
T ss_pred cccccCCCCcCCCC-CCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHH
Q ss_pred hhhHHHHHHHHhhh
Q psy3725 126 RRKDSQLKELQSRL 139 (760)
Q Consensus 126 ~~l~~e~~~l~~~~ 139 (760)
..+..+++.+++++
T Consensus 830 k~~~~~~~~l~~~i 843 (1293)
T KOG0996|consen 830 KRLAELIEYLESQI 843 (1293)
T ss_pred HHHHHHHHHHHHHH
No 480
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=25.23 E-value=7.9e+02 Score=30.76 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=25.3
Q ss_pred hhhhhhhccchhHHHH-HHHHHHHHHHHHHHHHHhcc
Q psy3725 7 KAGQEFRVSDEKDARS-YLQALTTKTTQELEYLKHAS 42 (760)
Q Consensus 7 ~~~i~qwv~dek~ar~-ylq~la~k~~~ele~lr~~~ 42 (760)
..+.+|=|=|+||++- -|...--++-+|++.|++.+
T Consensus 225 ~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~ 261 (775)
T PF10174_consen 225 ETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRG 261 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556788889999852 33334445889999999863
No 481
>KOG3433|consensus
Probab=25.19 E-value=4.6e+02 Score=26.86 Aligned_cols=73 Identities=18% Similarity=0.237 Sum_probs=41.2
Q ss_pred CCCCCCcccchhhHHH-HHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 57 GPGDKNWRDRRSQKLE-KMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 57 ~~~~~~w~~rr~~k~~-~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
|..+-.|-----.+-+ ++-+-+|++.|+.=-|-+..+.|-. .+.+.-+.+.|.++.+|..++..|+++++.+
T Consensus 63 gtSnyywsfps~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~-------en~K~~~e~tEer~~el~kklnslkk~~e~l 135 (203)
T KOG3433|consen 63 GTSNYYWSFPSEAICDRKSVLQELESQLATGSQKKATLGESI-------ENRKAGREETEERTDELTKKLNSLKKILESL 135 (203)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH-------HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445443333332 3445577888876665555555533 2333345566777777777777777766665
Q ss_pred H
Q psy3725 136 Q 136 (760)
Q Consensus 136 ~ 136 (760)
|
T Consensus 136 r 136 (203)
T KOG3433|consen 136 R 136 (203)
T ss_pred H
Confidence 5
No 482
>KOG0933|consensus
Probab=25.18 E-value=3e+02 Score=35.00 Aligned_cols=122 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhhhhhccchhHHHHHHHHHHH---HHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhhHHHHH
Q psy3725 8 AGQEFRVSDEKDARSYLQALTT---KTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQSSLN 84 (760)
Q Consensus 8 ~~i~qwv~dek~ar~ylq~la~---k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~lqsal~ 84 (760)
|+++--..+-++|+.-|++.-. .+.+||++|.+. +...+....+|.. +..+|+.-..--=|+.-.
T Consensus 670 a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~-----------~~kf~~l~~ql~l-~~~~l~l~~~r~~~~e~~ 737 (1174)
T KOG0933|consen 670 ADLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQ-----------SQKFRDLKQQLEL-KLHELALLEKRLEQNEFH 737 (1174)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH-HHHHHHHHHHHHhcChHh
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------hhhHHHHHHHHhhhcc
Q psy3725 85 SEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDL-----------RRKDSQLKELQSRLES 141 (760)
Q Consensus 85 ~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~-----------~~l~~e~~~l~~~~~~ 141 (760)
.-+.+-+.+.||+-..+......+..+++.+...+.|...+ +.+.++++.++.+++.
T Consensus 738 ~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~ 805 (1174)
T KOG0933|consen 738 KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEE 805 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHH
No 483
>KOG0301|consensus
Probab=25.14 E-value=1.3e+03 Score=28.23 Aligned_cols=209 Identities=10% Similarity=0.050 Sum_probs=0.0
Q ss_pred EEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecC
Q psy3725 461 MDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITR 540 (760)
Q Consensus 461 I~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~ 540 (760)
+.+.|..+=.++..|++..+.+|.++..++ ...+-..++ +.+++.....+. .+-=..-+ ++.+|.++.
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P----~~~LkgH~s-nVC~ls~~~~~~---~iSgSWD~----TakvW~~~~ 131 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEP----LYTLKGHKS-NVCSLSIGEDGT---LISGSWDS----TAKVWRIGE 131 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCCc----hhhhhcccc-ceeeeecCCcCc---eEeccccc----ceEEecchh
Q ss_pred CcccceeeeeEecCCcceEEEEecCceEEEEEcCCeEEEEecCCCCceeecCCCCCcccccccCCCCce-EEEEeCCCeE
Q psy3725 541 TKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDAL-LAIELPRGEF 619 (760)
Q Consensus 541 ~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl-~i~~l~~~Ef 619 (760)
-.... ...+..|..+.+++++.+.=|+.. ..+-|...++....+. +..+=+ +...+++..|
T Consensus 132 l~~~l-----~gH~asVWAv~~l~e~~~vTgsaD--KtIklWk~~~~l~tf~-----------gHtD~VRgL~vl~~~~f 193 (745)
T KOG0301|consen 132 LVYSL-----QGHTASVWAVASLPENTYVTGSAD--KTIKLWKGGTLLKTFS-----------GHTDCVRGLAVLDDSHF 193 (745)
T ss_pred hhccc-----CCcchheeeeeecCCCcEEeccCc--ceeeeccCCchhhhhc-----------cchhheeeeEEecCCCe
Q ss_pred EEEecceEEE-EcCCCCcccccceecCCCCcEEEeeCC-------eEEEEeCCeeEEEECcCCcEEEEEecCCceecC--
Q psy3725 620 LLVFHSLAAY-VDSQGHKSREKEIMYPALPTGASYMDG-------QLLIFSETHVDVFNAESGDWLQTVNIRRALPLD-- 689 (760)
Q Consensus 620 LLcy~~~gvf-VD~~G~rsR~~~I~W~~~P~~~ay~~P-------YLlvf~~~~IEVr~i~tg~lVQtI~~~~ir~L~-- 689 (760)
|=|=|+-.|- .|..|...+. -..-+++.|... .+..=.+..+.|+... +.+|+|.++-+..-.
T Consensus 194 lScsNDg~Ir~w~~~ge~l~~-----~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~ 266 (745)
T KOG0301|consen 194 LSCSNDGSIRLWDLDGEVLLE-----MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAK 266 (745)
T ss_pred EeecCCceEEEEeccCceeee-----eeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEE
Q ss_pred --CCCCEEEEecCCccEEE
Q psy3725 690 --TRGSLCFSLANDIPYVV 706 (760)
Q Consensus 690 --s~G~l~l~s~~~~~~~~ 706 (760)
.+|.|++++.+-.-+|.
T Consensus 267 ~L~NgDIvvg~SDG~VrVf 285 (745)
T KOG0301|consen 267 VLLNGDIVVGGSDGRVRVF 285 (745)
T ss_pred EeeCCCEEEeccCceEEEE
No 484
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=25.04 E-value=9.8e+02 Score=26.59 Aligned_cols=10 Identities=20% Similarity=0.205 Sum_probs=3.7
Q ss_pred HHHhhhHHHH
Q psy3725 123 MDLRRKDSQL 132 (760)
Q Consensus 123 ~e~~~l~~e~ 132 (760)
.+++.++.++
T Consensus 253 ~~l~~~~~~l 262 (423)
T TIGR01843 253 ARLAELRERL 262 (423)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 485
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.96 E-value=2.2e+02 Score=30.75 Aligned_cols=59 Identities=15% Similarity=0.304 Sum_probs=33.6
Q ss_pred HHHhhhHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 74 MELLNLQSSLNSEIQAKTQ----ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 74 ~~~l~lqsal~~Ei~akq~----i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
.+..+=+..+++||.+.+. ++.+....+..+-..+.++.++++++.++...|...++-+
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556667788877654 3334444555555566666666666666665554444443
No 486
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=24.87 E-value=3.9e+02 Score=27.39 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=14.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy3725 87 IQAKTQISEELSKTRSELIAAQKEICDFRLKM 118 (760)
Q Consensus 87 i~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~ 118 (760)
.+.|+.+..|+..-+..+...|.+|..-+..+
T Consensus 63 ~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L 94 (201)
T PF12072_consen 63 QKLRQELERELKERRKELQRLEKRLQQREEQL 94 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555444443333
No 487
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=24.83 E-value=3.6e+02 Score=24.87 Aligned_cols=63 Identities=13% Similarity=0.227 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHH------HHHHHHhhhcc
Q psy3725 79 LQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDS------QLKELQSRLES 141 (760)
Q Consensus 79 lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~------e~~~l~~~~~~ 141 (760)
|-++..+--++=+.++++|+.++..++.+..+-++.-+...+|..+.+.... +++.++..++.
T Consensus 1 Ls~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~ 69 (106)
T PF05837_consen 1 LSLEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKK 69 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
No 488
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=24.79 E-value=5.2e+02 Score=29.66 Aligned_cols=13 Identities=8% Similarity=0.225 Sum_probs=7.4
Q ss_pred HHHhhhHHHHHHH
Q psy3725 123 MDLRRKDSQLKEL 135 (760)
Q Consensus 123 ~e~~~l~~e~~~l 135 (760)
.||..||.++..+
T Consensus 276 ~Ei~~LKqeLa~~ 288 (395)
T PF10267_consen 276 NEIYNLKQELASM 288 (395)
T ss_pred HHHHHHHHHHHhH
Confidence 4556666666443
No 489
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=24.76 E-value=2e+02 Score=33.13 Aligned_cols=56 Identities=14% Similarity=0.329 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 78 NLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 78 ~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
+|+..+++--.-+..++.+..+.+... .+..+..++.++|..|++.+++++++++.
T Consensus 39 ~l~~~~~~lr~~rn~~sk~i~~~~~~~----~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 94 (425)
T PRK05431 39 ELQTELEELQAERNALSKEIGQAKRKG----EDAEALIAEVKELKEEIKALEAELDELEA 94 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455554322111 12334445555666666666666655553
No 490
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=24.72 E-value=4e+02 Score=22.55 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=6.4
Q ss_pred HHHHhhhHHHHHHHH
Q psy3725 122 SMDLRRKDSQLKELQ 136 (760)
Q Consensus 122 ~~e~~~l~~e~~~l~ 136 (760)
+.+|++|+++++.+.
T Consensus 31 q~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 31 QRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 491
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=24.65 E-value=7.9e+02 Score=30.72 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy3725 18 KDARSYLQALTTKTTQELEYLK 39 (760)
Q Consensus 18 k~ar~ylq~la~k~~~ele~lr 39 (760)
+.|+.++......+.+-++.|-
T Consensus 500 ~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 500 EQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 4677777777666665555554
No 492
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=24.63 E-value=84 Score=34.80 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHH
Q psy3725 100 TRSELIAAQKEICDFRLKMESVSMDLRRKDSQ 131 (760)
Q Consensus 100 ~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e 131 (760)
+|++...+.++|.|.|++++.|..|++.|+++
T Consensus 287 TRsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 287 TRSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 493
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=24.56 E-value=2.1e+02 Score=32.36 Aligned_cols=81 Identities=16% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3725 31 TTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKE 110 (760)
Q Consensus 31 ~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~ 110 (760)
|..|+++||.. |.-...++.++...+...+ +.|...+..+-...-.+|.+
T Consensus 110 lkkEie~IKk~---------------------------q~e~~~~i~~~~~~~~~~~---~~l~~Ri~e~Eeris~lEd~ 159 (370)
T PF02994_consen 110 LKKEIENIKKN---------------------------QSEMKLEIENLKKKLENID---ESLNSRIDELEERISELEDR 159 (370)
T ss_dssp --------H-------------------------------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhh---------------------------HHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHhhhcc
Q psy3725 111 ICDFRLKMESVSMDLRRKDSQLKELQSRLES 141 (760)
Q Consensus 111 l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~~ 141 (760)
+.+.++...++..+++.+...++++..|++.
T Consensus 160 ~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 160 IEEIEQAIKELEKRIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhccC
No 494
>PRK00295 hypothetical protein; Provisional
Probab=24.54 E-value=4.1e+02 Score=22.56 Aligned_cols=49 Identities=10% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 72 EKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 72 ~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+....||.+-|.+... -|+|+++ +-+-.+++..|.+++..|...++++.
T Consensus 5 ~Ri~~LE~kla~qE~t------ie~Ln~~----------v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDT------IQALNDV----------LVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhh
No 495
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=24.49 E-value=2e+02 Score=24.83 Aligned_cols=36 Identities=14% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 100 TRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 100 ~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
.+...-.++.++++.+++.++++.|.+.|+.|...+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 22 AQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=24.49 E-value=3.9e+02 Score=26.44 Aligned_cols=124 Identities=11% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCcceEEEEecCceEEEEEcCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeE------EEEecceE
Q psy3725 554 PTLAQCIHIFSEGRLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEF------LLVFHSLA 627 (760)
Q Consensus 554 P~~~~sl~~~~~~~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~Ef------LLcy~~~g 627 (760)
|.-+.+|+|..||.|+|......+|++.. ... -+................+..+-.+..+.+ ......+.
T Consensus 4 ps~~~~l~WS~Dg~laV~t~~~v~IL~~~-~P~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 79 (173)
T PF12657_consen 4 PSCPNALAWSEDGQLAVATGESVHILDPQ-TPN---SLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMD 79 (173)
T ss_pred CCCCcCeeECCCCCEEEEcCCeEEEEecc-CCc---ccccccccCCcccccccCCCccceEecCccccccCceecccccc
Q ss_pred EEEcCCCCcccccceecCCCCcEEEeeCCeEEEEeCCe-eEEEECc---CCcEEEEEecCCc
Q psy3725 628 AYVDSQGHKSREKEIMYPALPTGASYMDGQLLIFSETH-VDVFNAE---SGDWLQTVNIRRA 685 (760)
Q Consensus 628 vfVD~~G~rsR~~~I~W~~~P~~~ay~~PYLlvf~~~~-IEVr~i~---tg~lVQtI~~~~i 685 (760)
. .......-..+.|+ .+--..+..++|-|.+.++ |.|+.-. .++|+++....+.
T Consensus 80 ~---~~~s~~~vv~~aWS-P~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~v~dvs~~ 137 (173)
T PF12657_consen 80 D---EEISSSQVVSAAWS-PSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNRVADVSEA 137 (173)
T ss_pred c---cccccccEEEEEEC-CCCCCCCCceEEEEEcCCCeEEEEecCCCccccEeeeeehhHH
No 497
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=24.47 E-value=1.4e+02 Score=23.45 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=0.0
Q ss_pred ceeeeeEecCCcceEEEEecCc-eEEEEEcCCeEEE
Q psy3725 545 HKRLHEVILPTLAQCIHIFSEG-RLCVGYQSGFSIY 579 (760)
Q Consensus 545 fkk~kE~~lP~~~~sl~~~~~~-~LcVG~~~gF~iv 579 (760)
|+.+.|-.+|.+++++.|++.. -|.+|+.+|--.+
T Consensus 2 f~~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v 37 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLV 37 (47)
T ss_pred cceecccCCCCcEEEEEECCCCCEEEEEECCCeEEE
No 498
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=24.41 E-value=4.9e+02 Score=29.78 Aligned_cols=70 Identities=9% Similarity=0.093 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhh
Q psy3725 69 QKLEKMELLNLQSSLNSEIQAK-TQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSR 138 (760)
Q Consensus 69 ~k~~~~~~l~lqsal~~Ei~ak-q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~ 138 (760)
++....+.-.-..+|+.++++. +....+..++...+-..+.++.+++.+..++..++..|...+.++..+
T Consensus 58 ~~qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~ 128 (390)
T PRK10920 58 GKQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQQKVATISGS 128 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
No 499
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=24.35 E-value=94 Score=25.92 Aligned_cols=39 Identities=3% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 98 SKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 98 ~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
....++..+.|++|...|+|.++...+.+.-+.+.+..+
T Consensus 21 ~~a~a~~ltiEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 21 ASAQAAPLTIEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred HhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 500
>KOG3156|consensus
Probab=24.23 E-value=8.5e+02 Score=25.57 Aligned_cols=96 Identities=15% Similarity=0.261 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhhHHHHHHHH----HH
Q psy3725 14 VSDEKDARSYLQALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQSSLNSEI----QA 89 (760)
Q Consensus 14 v~dek~ar~ylq~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~lqsal~~Ei----~a 89 (760)
|+++=..++-+|-+----.-.+..+|.- .+-.+++|..+||..-+.=+ |-
T Consensus 82 vsk~~vtkaqq~~v~~QQ~~~f~kiRse--------------------------l~S~e~sEF~~lr~e~EklkndlEk~ 135 (220)
T KOG3156|consen 82 VSKELVTKAQQEKVSYQQKVDFAKIRSE--------------------------LVSIERSEFANLRAENEKLKNDLEKL 135 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHHHHHH-------------HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 90 KTQISEELSKTRSEL-------------IAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 90 kq~i~eeL~k~~~~~-------------~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
|+.+-+|++++.+.+ .++-..|+..|-- -.+..||..|+.+++..|
T Consensus 136 ks~lr~ei~~~~a~~rLdLNLEkgr~~d~~~~~~l~~~e~s-~kId~Ev~~lk~qi~s~K 194 (220)
T KOG3156|consen 136 KSSLRHEISKTTAEFRLDLNLEKGRIKDESSSHDLQIKEIS-TKIDQEVTNLKTQIESVK 194 (220)
T ss_pred HHHHHHHHHhcchhceeecchhhccccchhhhcchhHhHHH-HHHHHHHHHHHHHHHHHH
Done!