Query psy3725
Match_columns 760
No_of_seqs 377 out of 1380
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 23:58:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rov_A RHO-associated protein 99.9 5.4E-22 1.9E-26 184.0 11.3 111 281-397 1-113 (117)
2 1wt6_A Myotonin-protein kinase 99.8 3.4E-19 1.2E-23 149.7 8.4 63 74-136 10-72 (81)
3 2enz_A NPKC-theta, protein kin 99.5 6.6E-15 2.3E-19 122.2 6.3 57 206-262 8-64 (65)
4 2eli_A Protein kinase C alpha 99.5 4.3E-14 1.5E-18 123.5 8.3 64 207-270 14-77 (85)
5 2db6_A SH3 and cysteine rich d 99.5 2.2E-14 7.6E-19 122.1 4.9 59 205-263 12-71 (74)
6 2enn_A NPKC-theta, protein kin 99.5 2.8E-14 9.6E-19 122.4 5.4 58 206-263 19-76 (77)
7 2yuu_A NPKC-delta, protein kin 99.5 3.5E-14 1.2E-18 123.6 5.9 61 207-267 14-74 (83)
8 3uej_A NPKC-delta, protein kin 99.5 5.9E-15 2E-19 122.5 0.6 56 208-263 7-62 (65)
9 1ptq_A Protein kinase C delta 99.5 3.1E-14 1E-18 111.8 4.0 50 211-260 1-50 (50)
10 1y8f_A UNC-13 homolog A, MUNC1 99.4 3.7E-14 1.2E-18 118.1 3.8 56 207-262 10-65 (66)
11 2row_A RHO-associated protein 99.4 9.8E-14 3.3E-18 120.3 4.1 57 207-263 21-82 (84)
12 1rfh_A RAS association (ralgds 99.3 1.5E-12 5E-17 106.0 4.0 52 207-261 7-59 (59)
13 2fnf_X Putative RAS effector N 99.3 2.2E-12 7.4E-17 109.2 4.7 52 207-261 20-72 (72)
14 1faq_A RAF-1; transferase, ser 99.3 3.5E-12 1.2E-16 100.9 4.9 50 209-262 2-51 (52)
15 4b6d_A RAC GTPase-activating p 99.2 1.1E-11 3.8E-16 101.4 5.1 54 208-262 6-59 (61)
16 3pfq_A PKC-B, PKC-beta, protei 99.1 1.4E-11 4.8E-16 145.4 2.5 90 205-294 32-134 (674)
17 3cxl_A N-chimerin; SH2, RHO-GA 99.1 2.4E-11 8.3E-16 137.4 2.3 86 207-292 206-312 (463)
18 1kbe_A Kinase suppressor of RA 99.0 2.4E-10 8.2E-15 89.2 4.5 46 208-258 2-47 (49)
19 3ky9_A Proto-oncogene VAV; cal 98.9 6.9E-10 2.4E-14 129.0 4.4 62 207-269 515-576 (587)
20 2vrw_B P95VAV, VAV1, proto-onc 98.7 4.9E-09 1.7E-13 116.2 4.4 56 207-263 343-398 (406)
21 3aj4_A Pleckstrin homology dom 98.6 4.7E-07 1.6E-11 81.4 12.1 104 281-398 5-110 (112)
22 2dn6_A KIAA0640 protein; PH do 98.5 1.7E-06 5.7E-11 77.8 14.7 102 281-405 8-109 (115)
23 2cod_A Centaurin-delta 1; ARF 98.5 1.5E-06 5.3E-11 78.5 13.7 91 281-399 8-99 (115)
24 2rsg_A Collagen type IV alpha- 98.5 4.6E-07 1.6E-11 79.0 9.4 90 283-397 3-92 (94)
25 1wgq_A FYVE, rhogef and PH dom 98.5 1.5E-06 5.1E-11 77.8 12.8 95 281-398 8-102 (109)
26 3rcp_A Pleckstrin homology dom 98.5 4.8E-07 1.6E-11 80.1 9.4 93 283-399 1-93 (103)
27 2yry_A Pleckstrin homology dom 98.4 2.7E-06 9.2E-11 77.4 13.7 101 279-399 20-120 (122)
28 2dkp_A Pleckstrin homology dom 98.4 4.3E-06 1.5E-10 76.7 15.1 101 278-399 18-119 (128)
29 2lul_A Tyrosine-protein kinase 98.4 3E-06 1E-10 82.3 14.7 106 279-399 13-121 (164)
30 2i5f_A Pleckstrin; PH domain, 98.4 2.2E-06 7.4E-11 76.3 12.4 100 281-398 7-108 (109)
31 1pls_A Pleckstrin homology dom 98.4 4.6E-06 1.6E-10 75.0 14.3 100 281-402 5-104 (113)
32 1v5u_A SBF1, SET binding facto 98.4 3E-06 1E-10 76.4 13.0 99 281-397 8-109 (117)
33 2d9v_A Pleckstrin homology dom 98.4 3E-06 1E-10 78.9 13.2 105 281-399 8-114 (130)
34 1upq_A PEPP1; PH domain, phosp 98.4 3.8E-06 1.3E-10 76.5 13.4 99 281-399 11-109 (123)
35 1fgy_A GRP1; PH domain, signal 98.4 3.5E-06 1.2E-10 77.0 13.2 100 282-399 6-120 (127)
36 2d9y_A Pleckstrin homology dom 98.4 4.1E-06 1.4E-10 75.5 13.5 98 280-398 10-108 (117)
37 1fao_A Dual adaptor of phospho 98.4 3E-06 1E-10 77.7 12.4 98 280-401 17-114 (126)
38 1x1g_A Pleckstrin 2; PH domain 98.4 2.4E-06 8.1E-11 78.7 11.6 102 281-398 18-123 (129)
39 3pfq_A PKC-B, PKC-beta, protei 98.4 2E-07 6.9E-12 109.9 5.5 57 208-264 100-156 (674)
40 1x05_A Pleckstrin; PH domain, 98.4 3.8E-06 1.3E-10 77.3 12.7 102 280-399 17-120 (129)
41 1v89_A Hypothetical protein KI 98.3 4.5E-06 1.5E-10 75.1 12.7 104 281-399 8-112 (118)
42 1eaz_A Tandem PH domain contai 98.3 2.9E-06 9.9E-11 77.4 11.4 101 280-401 13-113 (125)
43 2w2x_D 1-phosphatidylinositol- 98.3 2.4E-06 8.1E-11 79.1 10.7 104 281-398 12-118 (124)
44 2dhk_A TBC1 domain family memb 98.3 6.3E-06 2.1E-10 75.3 13.3 100 281-404 8-109 (119)
45 1btn_A Beta-spectrin; signal t 98.3 1.1E-06 3.6E-11 78.0 7.6 99 283-397 1-106 (106)
46 2y7b_A Actin-binding protein a 98.3 3.1E-06 1.1E-10 78.4 10.9 114 281-402 5-131 (134)
47 1v88_A Oxysterol binding prote 98.3 5.7E-06 1.9E-10 77.5 12.5 100 281-399 8-124 (130)
48 1u5d_A SKAP55, SRC kinase-asso 98.3 7.6E-06 2.6E-10 72.3 12.4 101 282-400 4-106 (108)
49 3cxb_B Pleckstrin homology dom 98.3 7.8E-06 2.7E-10 74.2 12.2 97 283-399 2-101 (112)
50 2da0_A 130-kDa phosphatidylino 98.3 1.5E-05 5E-10 72.2 14.0 99 279-404 8-106 (114)
51 2d9x_A Oxysterol binding prote 98.3 5.8E-06 2E-10 75.5 11.3 97 282-402 9-107 (120)
52 2j59_M RHO-GTPase activating p 98.2 4.1E-06 1.4E-10 81.1 10.7 101 281-399 3-111 (168)
53 4a6h_A Phosphatidylinositol 4, 98.2 1.2E-05 4.2E-10 74.3 13.2 110 281-398 6-117 (120)
54 1wi1_A Calcium-dependent activ 98.2 7.8E-06 2.7E-10 76.1 11.5 98 280-399 7-110 (126)
55 1x1f_A Signal-transducing adap 98.2 7.9E-06 2.7E-10 78.4 11.9 96 281-399 18-113 (149)
56 2cof_A Protein KIAA1914; PH do 98.2 7.9E-06 2.7E-10 73.1 11.0 93 281-398 8-100 (107)
57 1btk_A Bruton'S tyrosine kinas 98.2 1.1E-05 3.7E-10 78.9 12.4 108 282-399 4-132 (169)
58 1v5p_A Pleckstrin homology dom 98.2 1.2E-05 4.1E-10 74.8 11.8 101 282-399 16-120 (126)
59 2coc_A FYVE, rhogef and PH dom 98.1 2.9E-05 9.9E-10 70.9 12.0 95 281-398 8-105 (112)
60 1wg7_A Dedicator of cytokinesi 98.1 2.3E-05 7.8E-10 74.2 11.7 99 280-399 17-124 (150)
61 1u5f_A SRC-associated adaptor 98.1 2.8E-05 9.5E-10 73.6 12.3 105 281-403 17-123 (148)
62 1wjm_A Beta-spectrin III; PH d 98.0 1.5E-05 5E-10 73.0 9.4 105 281-400 8-118 (123)
63 1unq_A RAC-alpha serine/threon 98.0 1.4E-05 4.8E-10 73.2 8.8 105 281-402 8-113 (125)
64 2dtc_A RAL guanine nucleotide 98.0 9.1E-05 3.1E-09 69.1 13.2 103 282-399 2-112 (126)
65 2p0d_A RHO GTPase-activating p 97.9 0.00012 4E-09 68.1 12.8 107 281-402 12-127 (129)
66 3a8p_A T-lymphoma invasion and 97.9 0.0001 3.4E-09 77.2 13.0 107 281-402 11-127 (263)
67 1dyn_A Dynamin; signal transdu 97.9 0.00016 5.5E-09 66.9 12.7 100 282-396 13-114 (125)
68 1dro_A Beta-spectrin; cytoskel 97.9 3.5E-05 1.2E-09 70.6 8.3 103 281-398 8-118 (122)
69 2r09_A Cytohesin-3; autoinhibi 97.8 0.00011 3.8E-09 79.8 13.2 101 281-399 213-328 (347)
70 3tca_A Amyloid beta A4 precurs 97.8 0.00012 4.2E-09 76.6 13.1 108 281-398 168-275 (291)
71 3lju_X ARF-GAP with dual PH do 97.8 7.3E-05 2.5E-09 82.5 11.4 100 282-399 270-372 (386)
72 2rlo_A Centaurin-gamma 1; spli 97.7 0.0001 3.5E-09 68.1 9.6 107 282-399 5-124 (128)
73 1u5e_A SRC-associated adaptor 97.7 0.00018 6.1E-09 72.8 12.2 101 281-399 106-208 (211)
74 2d9w_A Docking protein 2; PH d 97.7 0.00047 1.6E-08 63.7 13.4 104 280-398 11-120 (127)
75 4h8s_A DCC-interacting protein 97.7 5.8E-05 2E-09 83.6 8.4 98 280-399 300-398 (407)
76 3tfm_A Myosin X; split PH doma 97.7 0.00026 8.7E-09 72.4 12.6 95 281-399 58-155 (228)
77 2fjl_A 1-phosphatidylinositol- 97.6 0.00045 1.5E-08 66.0 12.2 102 283-398 3-147 (150)
78 1qqg_A IRS-1, insulin receptor 97.6 0.00018 6.3E-09 75.2 9.7 97 281-400 10-113 (264)
79 3pp2_A RHO GTPase-activating p 97.4 0.001 3.5E-08 61.2 11.8 103 282-398 9-122 (124)
80 3lju_X ARF-GAP with dual PH do 97.4 0.0003 1E-08 77.6 9.2 99 281-399 146-246 (386)
81 2q13_A DCC-interacting protein 97.4 0.00049 1.7E-08 75.5 10.4 98 280-399 277-375 (385)
82 4bbk_A Kindlin-1, fermitin fam 97.3 0.0008 2.7E-08 64.3 9.3 99 283-397 28-127 (165)
83 4f7h_A Fermitin family homolog 97.2 0.0022 7.4E-08 61.9 10.8 99 283-397 49-148 (173)
84 1r79_A Diacylglycerol kinase, 97.1 0.00026 8.9E-09 61.3 3.7 57 207-263 24-81 (84)
85 2ys3_A UNC-112-related protein 97.1 0.001 3.6E-08 62.4 7.5 99 283-397 11-110 (137)
86 3hk0_A Growth factor receptor- 96.8 0.0088 3E-07 62.2 12.7 112 282-404 133-247 (256)
87 4gmv_A RAS-associated and plec 96.7 0.0068 2.3E-07 63.8 10.6 106 283-399 160-266 (281)
88 4a11_B DNA excision repair pro 96.5 1 3.5E-05 46.8 31.0 276 422-710 43-364 (408)
89 3v7d_B Cell division control p 96.4 1.4 4.8E-05 47.4 30.5 230 422-680 162-428 (464)
90 1sq9_A Antiviral protein SKI8; 96.3 1.4 4.7E-05 46.0 33.5 243 422-681 16-330 (397)
91 4aez_A CDC20, WD repeat-contai 96.2 1.6 5.6E-05 46.3 29.5 222 454-707 133-376 (401)
92 3a8n_A TIAM-1, T-lymphoma inva 96.2 0.0067 2.3E-07 63.8 7.1 90 296-400 36-125 (279)
93 1r5m_A SIR4-interacting protei 96.2 1.5 5.2E-05 45.6 25.7 224 424-675 110-363 (425)
94 3zwl_B Eukaryotic translation 96.0 1.7 5.8E-05 44.3 31.3 264 422-708 32-343 (369)
95 1yfq_A Cell cycle arrest prote 95.7 2.1 7.2E-05 43.4 27.4 236 422-683 11-292 (342)
96 1l0q_A Surface layer protein; 95.6 2.6 8.8E-05 44.0 29.2 232 424-684 33-286 (391)
97 1pby_B Quinohemoprotein amine 95.4 2.6 9E-05 42.4 26.5 118 457-587 35-166 (337)
98 1r5m_A SIR4-interacting protei 95.3 3.2 0.00011 43.1 29.5 221 456-708 109-358 (425)
99 3vl1_A 26S proteasome regulato 95.2 3.6 0.00012 43.2 26.4 259 432-708 67-362 (420)
100 3mkq_A Coatomer beta'-subunit; 95.2 4.3 0.00015 47.0 26.6 226 454-707 12-255 (814)
101 2ovr_B FBW7, F-BOX/WD repeat p 95.1 4.3 0.00015 43.5 27.7 221 422-680 159-398 (445)
102 1p22_A F-BOX/WD-repeat protein 95.0 4.6 0.00016 43.3 31.7 251 422-707 133-410 (435)
103 3mmy_A MRNA export factor; mRN 94.9 3.7 0.00013 41.7 27.7 238 422-682 39-313 (368)
104 1jmx_B Amine dehydrogenase; ox 94.9 3.7 0.00013 41.6 25.0 122 457-588 44-179 (349)
105 3dw8_B Serine/threonine-protei 94.9 4.7 0.00016 42.6 25.3 146 532-680 199-380 (447)
106 3mkq_A Coatomer beta'-subunit; 94.8 8 0.00027 44.7 31.3 234 422-684 13-270 (814)
107 3oja_B Anopheles plasmodium-re 94.7 0.3 1E-05 56.0 14.7 65 76-140 518-582 (597)
108 3zwl_B Eukaryotic translation 94.6 4.4 0.00015 41.1 28.5 230 452-698 29-277 (369)
109 2pm9_A Protein WEB1, protein t 94.6 5.2 0.00018 41.7 23.1 241 452-708 64-334 (416)
110 3dsm_A Uncharacterized protein 94.5 5.4 0.00018 41.4 25.4 224 431-681 51-309 (328)
111 4ejn_A RAC-alpha serine/threon 94.4 0.06 2.1E-06 59.4 7.7 101 282-399 7-108 (446)
112 1gxr_A ESG1, transducin-like e 94.4 4.6 0.00016 40.5 30.3 254 422-704 51-330 (337)
113 1l0q_A Surface layer protein; 94.4 5.5 0.00019 41.4 29.5 228 452-707 28-271 (391)
114 3odt_A Protein DOA1; ubiquitin 94.3 4.7 0.00016 40.0 33.0 252 422-708 18-293 (313)
115 3sfz_A APAF-1, apoptotic pepti 94.2 14 0.00048 45.3 29.9 271 422-708 615-910 (1249)
116 3sfz_A APAF-1, apoptotic pepti 94.2 4.6 0.00016 49.6 24.5 229 423-682 962-1216(1249)
117 1gxr_A ESG1, transducin-like e 94.1 5.2 0.00018 40.0 31.0 257 424-707 11-292 (337)
118 1ri6_A Putative isomerase YBHE 94.0 5.8 0.0002 39.9 23.0 196 469-681 6-221 (343)
119 4g56_B MGC81050 protein; prote 94.0 5.3 0.00018 41.9 21.4 211 453-684 40-269 (357)
120 3bws_A Protein LP49; two-domai 93.9 7.4 0.00025 41.0 29.3 199 455-683 169-400 (433)
121 4g56_B MGC81050 protein; prote 93.7 7.8 0.00027 40.6 25.3 147 423-582 95-257 (357)
122 1pgu_A Actin interacting prote 93.7 10 0.00035 41.7 29.2 143 422-582 160-327 (615)
123 1got_B GT-beta; complex (GTP-b 93.4 8.3 0.00029 39.8 28.3 230 453-708 53-298 (340)
124 3i2n_A WD repeat-containing pr 93.1 8.1 0.00028 39.0 24.6 147 422-582 65-242 (357)
125 1yfq_A Cell cycle arrest prote 92.9 8.7 0.0003 38.7 23.3 208 454-683 10-241 (342)
126 4ery_A WD repeat-containing pr 92.8 8.8 0.0003 38.6 31.7 231 422-684 23-279 (312)
127 1nir_A Nitrite reductase; hemo 92.8 15 0.00052 41.3 26.3 214 468-698 149-388 (543)
128 4e54_B DNA damage-binding prot 92.8 12 0.00041 40.1 26.8 147 422-582 119-281 (435)
129 3qwm_A Iqsec1, IQ motif and SE 92.8 1.3 4.3E-05 41.8 12.3 102 286-399 19-122 (140)
130 2vdu_B TRNA (guanine-N(7)-)-me 92.6 13 0.00044 40.0 30.0 220 457-698 104-371 (450)
131 1k8k_C P40, ARP2/3 complex 41 92.5 10 0.00035 38.6 25.9 229 454-707 7-270 (372)
132 2ovr_B FBW7, F-BOX/WD repeat p 91.9 15 0.00051 39.2 35.1 246 425-707 122-387 (445)
133 3hnw_A Uncharacterized protein 91.9 2.6 8.8E-05 39.6 13.3 94 20-137 26-131 (138)
134 2pm9_A Protein WEB1, protein t 91.8 14 0.00047 38.4 21.6 234 422-678 67-342 (416)
135 3gre_A Serine/threonine-protei 91.7 15 0.00052 38.8 24.5 150 422-582 63-244 (437)
136 2lg1_A A-kinase anchor protein 91.6 0.64 2.2E-05 45.7 9.3 44 356-403 133-176 (185)
137 1zc3_B Exocyst complex protein 91.5 4.5 0.00015 36.3 14.2 54 331-400 55-108 (113)
138 2aq5_A Coronin-1A; WD40 repeat 91.5 15 0.00053 38.5 25.1 206 454-680 80-307 (402)
139 3odt_A Protein DOA1; ubiquitin 91.4 12 0.0004 37.0 24.8 215 453-699 16-244 (313)
140 3bws_A Protein LP49; two-domai 91.0 17 0.00059 38.1 27.6 224 422-672 169-431 (433)
141 3vgz_A Uncharacterized protein 90.8 15 0.00051 37.1 30.2 209 456-684 89-314 (353)
142 2oaj_A Protein SNI1; WD40 repe 90.7 17 0.00057 43.8 22.5 213 448-679 10-248 (902)
143 1nty_A Triple functional domai 90.7 2.1 7.3E-05 44.8 12.9 40 358-399 269-308 (311)
144 2v66_B Nuclear distribution pr 90.4 3.4 0.00012 37.3 11.9 76 23-135 7-82 (111)
145 1erj_A Transcriptional repress 90.4 20 0.00067 37.8 25.8 145 424-582 125-286 (393)
146 1k8k_C P40, ARP2/3 complex 41 90.4 17 0.00057 37.0 25.1 240 423-677 9-280 (372)
147 1p22_A F-BOX/WD-repeat protein 90.2 21 0.00073 37.9 27.5 220 456-708 134-362 (435)
148 3hfq_A Uncharacterized protein 89.6 20 0.00067 36.6 24.5 238 454-710 38-316 (347)
149 2ynn_A Coatomer subunit beta'; 88.8 21 0.00073 35.9 27.3 225 454-708 12-256 (304)
150 4aez_A CDC20, WD repeat-contai 88.7 26 0.00088 36.8 25.4 228 422-680 134-387 (401)
151 3f3f_A Nucleoporin SEH1; struc 88.7 20 0.00068 35.4 26.3 124 452-582 8-142 (351)
152 3v7d_B Cell division control p 88.4 29 0.00098 36.9 33.0 248 425-700 125-411 (464)
153 2aq5_A Coronin-1A; WD40 repeat 88.3 6.9 0.00024 41.2 14.9 153 422-582 176-341 (402)
154 1ri6_A Putative isomerase YBHE 88.3 22 0.00076 35.5 27.5 243 452-708 34-305 (343)
155 1pgu_A Actin interacting prote 87.7 36 0.0012 37.3 28.5 221 454-683 17-293 (615)
156 3ow8_A WD repeat-containing pr 87.6 27 0.00093 35.7 26.5 255 422-707 32-317 (321)
157 3k26_A Polycomb protein EED; W 87.3 26 0.00089 35.2 21.4 146 423-582 70-259 (366)
158 4gqb_B Methylosome protein 50; 87.1 31 0.0011 35.9 23.6 225 424-678 84-336 (344)
159 3lrv_A PRE-mRNA-splicing facto 87.0 29 0.001 35.5 20.9 196 456-674 77-293 (343)
160 3dm0_A Maltose-binding peripla 86.8 48 0.0016 37.8 32.5 232 422-682 382-641 (694)
161 3hnw_A Uncharacterized protein 86.8 4 0.00014 38.3 10.3 48 87-134 60-107 (138)
162 3g4e_A Regucalcin; six bladed 86.7 28 0.00097 35.1 18.5 162 532-708 36-226 (297)
163 4a11_B DNA excision repair pro 86.7 31 0.001 35.3 24.0 117 454-582 42-174 (408)
164 1sq9_A Antiviral protein SKI8; 86.5 32 0.0011 35.4 26.7 214 454-682 15-276 (397)
165 2jee_A YIIU; FTSZ, septum, coi 86.4 4.5 0.00015 34.4 9.3 61 80-140 12-72 (81)
166 1mai_A Phospholipase C delta-1 86.1 2.9 0.0001 38.4 9.0 91 300-399 29-121 (131)
167 1v61_A RAC/CDC42 guanine nucle 86.0 7.9 0.00027 35.9 11.8 39 355-399 88-126 (132)
168 3vmx_A Voltage-gated hydrogen 85.7 2.6 9E-05 32.2 6.7 40 95-134 4-43 (48)
169 3mmy_A MRNA export factor; mRN 85.6 32 0.0011 34.5 26.4 115 454-582 38-159 (368)
170 3nmd_A CGMP dependent protein 85.4 1.6 5.5E-05 36.3 5.9 17 76-92 21-40 (72)
171 1v5n_A PDI-like hypothetical p 85.3 0.59 2E-05 40.6 3.5 44 210-257 37-80 (89)
172 3i2n_A WD repeat-containing pr 85.0 34 0.0011 34.3 21.9 208 454-681 17-251 (357)
173 1dbh_A Protein (human SOS 1); 84.9 6.4 0.00022 41.8 12.3 38 356-399 312-349 (354)
174 3scy_A Hypothetical bacterial 84.7 38 0.0013 34.7 25.5 208 457-679 101-345 (361)
175 1xip_A Nucleoporin NUP159; bet 84.6 15 0.00052 39.9 15.3 140 458-625 90-233 (388)
176 3dw8_B Serine/threonine-protei 84.5 42 0.0015 35.1 22.3 128 553-684 176-327 (447)
177 1vyh_C Platelet-activating fac 84.4 45 0.0015 35.3 28.8 144 422-582 108-264 (410)
178 3frx_A Guanine nucleotide-bind 84.4 38 0.0013 34.4 22.2 144 422-582 107-266 (319)
179 2xyi_A Probable histone-bindin 84.1 47 0.0016 35.3 22.6 122 453-582 179-308 (430)
180 1d7m_A Cortexillin I; coiled-c 84.0 7.2 0.00025 33.5 9.4 50 77-126 7-63 (101)
181 3dwl_C Actin-related protein 2 83.8 15 0.00051 37.8 14.4 230 456-710 12-280 (377)
182 4ery_A WD repeat-containing pr 83.6 38 0.0013 33.8 30.5 226 452-707 20-264 (312)
183 3ol1_A Vimentin; structural ge 83.4 15 0.00052 33.3 12.3 55 82-136 56-114 (119)
184 2ecf_A Dipeptidyl peptidase IV 83.0 70 0.0024 36.4 24.4 64 520-590 122-187 (741)
185 3no2_A Uncharacterized protein 82.5 44 0.0015 33.7 21.3 154 532-698 57-230 (276)
186 3g4e_A Regucalcin; six bladed 82.4 44 0.0015 33.6 23.3 196 461-684 18-240 (297)
187 1g6u_A Domain swapped dimer; d 82.4 3 0.0001 30.4 5.5 40 82-128 4-46 (48)
188 2rgn_B RHOA/RAC/CDC42 exchange 82.2 10 0.00034 40.5 12.5 42 357-400 278-319 (354)
189 3mq9_A Bone marrow stromal ant 82.1 8.6 0.00029 42.6 12.3 30 12-41 363-392 (471)
190 2w18_A PALB2, fancn, partner a 82.0 51 0.0017 35.5 17.8 150 519-682 55-221 (356)
191 3u4y_A Uncharacterized protein 81.9 44 0.0015 33.4 26.0 207 467-699 9-240 (331)
192 2v71_A Nuclear distribution pr 81.7 14 0.00046 36.4 11.9 44 91-134 91-134 (189)
193 3vgz_A Uncharacterized protein 81.2 48 0.0016 33.3 26.0 223 456-707 41-299 (353)
194 3dwl_C Actin-related protein 2 80.9 52 0.0018 33.6 19.3 151 422-582 55-235 (377)
195 2vrw_B P95VAV, VAV1, proto-onc 80.8 15 0.00052 39.7 13.5 105 282-403 235-339 (406)
196 3dsm_A Uncharacterized protein 80.7 54 0.0019 33.6 21.4 207 458-698 46-285 (328)
197 3ei3_B DNA damage-binding prot 80.6 55 0.0019 33.6 27.6 147 422-582 118-281 (383)
198 3ei3_B DNA damage-binding prot 80.5 55 0.0019 33.6 35.0 256 422-707 73-378 (383)
199 3a2a_A Voltage-gated hydrogen 80.2 3.8 0.00013 32.0 5.8 40 95-134 11-50 (58)
200 3a7p_A Autophagy protein 16; c 79.7 8.5 0.00029 36.5 9.3 52 81-132 61-112 (152)
201 3vu4_A KMHSV2; beta-propeller 79.5 61 0.0021 33.5 23.7 220 454-707 18-267 (355)
202 3a7p_A Autophagy protein 16; c 79.2 12 0.00042 35.4 10.2 42 83-124 87-132 (152)
203 2pz1_A RHO guanine nucleotide 78.7 34 0.0011 37.7 15.7 113 281-405 334-446 (466)
204 3no2_A Uncharacterized protein 78.3 60 0.0021 32.7 17.4 161 531-708 15-192 (276)
205 4h5i_A Guanine nucleotide-exch 78.2 69 0.0023 33.3 22.5 150 425-582 136-299 (365)
206 4e54_B DNA damage-binding prot 78.1 51 0.0018 35.0 16.6 203 455-681 119-335 (435)
207 3jrp_A Fusion protein of prote 77.9 61 0.0021 32.6 26.1 236 422-675 11-289 (379)
208 3gre_A Serine/threonine-protei 77.9 72 0.0025 33.4 24.1 209 454-683 62-302 (437)
209 3o0z_A RHO-associated protein 77.8 12 0.0004 36.1 9.8 43 74-116 69-111 (168)
210 2xyi_A Probable histone-bindin 77.7 76 0.0026 33.6 23.3 239 452-708 125-407 (430)
211 2coa_A Protein kinase C, D2 ty 77.5 28 0.00097 31.9 11.8 99 281-397 8-117 (125)
212 1ci6_A Transcription factor AT 77.3 5.3 0.00018 32.3 6.3 37 101-137 22-58 (63)
213 3jro_A Fusion protein of prote 76.7 1.2E+02 0.004 35.2 24.4 235 422-674 9-286 (753)
214 1nir_A Nitrite reductase; hemo 76.7 1E+02 0.0035 34.5 27.5 203 456-684 179-420 (543)
215 2dfk_A Collybistin II; DH doma 76.6 23 0.0008 38.4 13.4 112 281-404 257-368 (402)
216 3ky9_A Proto-oncogene VAV; cal 76.3 15 0.0005 42.2 12.1 106 282-404 407-512 (587)
217 1w1g_A HPDK1, 3-phosphoinositi 76.2 11 0.00039 35.7 9.1 90 281-402 52-142 (151)
218 1xcg_A PDZ-rhogef, RHO guanine 76.1 22 0.00074 37.8 12.7 25 375-399 342-366 (368)
219 1vyh_C Platelet-activating fac 76.1 83 0.0028 33.2 26.4 114 452-582 105-222 (410)
220 3oja_B Anopheles plasmodium-re 76.0 11 0.00037 42.9 10.9 47 91-137 505-551 (597)
221 3vu4_A KMHSV2; beta-propeller 75.8 77 0.0026 32.7 22.5 229 422-675 19-273 (355)
222 2fxo_A Myosin heavy chain, car 75.6 18 0.00062 33.2 10.3 51 74-124 48-98 (129)
223 1kz7_A Guanine nucleotide exch 75.4 29 0.00098 36.9 13.5 38 357-399 288-325 (353)
224 3jrp_A Fusion protein of prote 75.4 71 0.0024 32.1 25.0 118 454-582 10-133 (379)
225 2dfs_A Myosin-5A; myosin-V, in 75.0 6.6 0.00022 48.6 9.2 34 101-134 976-1009(1080)
226 1t2k_D Cyclic-AMP-dependent tr 74.9 6.5 0.00022 31.4 6.1 36 102-137 22-57 (61)
227 3u4y_A Uncharacterized protein 74.9 71 0.0024 31.8 30.3 209 454-682 39-263 (331)
228 3f3f_A Nucleoporin SEH1; struc 74.7 67 0.0023 31.5 27.8 154 422-582 11-199 (351)
229 3lrv_A PRE-mRNA-splicing facto 74.1 80 0.0027 32.1 21.9 115 454-582 124-243 (343)
230 3nmd_A CGMP dependent protein 73.9 8.1 0.00028 32.1 6.5 30 111-140 35-64 (72)
231 3mq7_A Bone marrow stromal ant 73.6 11 0.00038 34.0 7.7 36 105-140 74-109 (121)
232 3k26_A Polycomb protein EED; W 73.4 78 0.0027 31.6 25.5 236 453-708 16-315 (366)
233 2d9z_A Protein kinase C, NU ty 73.2 35 0.0012 31.5 11.3 99 281-398 8-122 (129)
234 3ow8_A WD repeat-containing pr 73.2 84 0.0029 31.9 26.6 225 454-707 31-275 (321)
235 2w6a_A ARF GTPase-activating p 72.5 13 0.00046 29.5 7.0 42 95-136 13-54 (63)
236 2z0q_A XPLN, RHO guanine nucle 72.3 2.8 9.5E-05 44.5 4.5 40 356-398 306-345 (346)
237 1hjb_A Ccaat/enhancer binding 71.1 9 0.00031 33.0 6.5 36 102-137 36-71 (87)
238 3he5_B Synzip2; heterodimeric 70.5 15 0.0005 27.3 6.4 39 95-133 10-48 (52)
239 3jro_A Fusion protein of prote 70.4 1.3E+02 0.0046 34.7 18.7 152 422-582 53-237 (753)
240 4ggc_A P55CDC, cell division c 69.3 88 0.003 30.6 28.9 251 426-707 29-311 (318)
241 3cve_A Homer protein homolog 1 69.2 7.3 0.00025 32.4 5.2 30 107-136 5-34 (72)
242 2ynn_A Coatomer subunit beta'; 68.8 98 0.0033 30.9 29.5 233 422-683 13-269 (304)
243 1jof_A Carboxy-CIS,CIS-muconat 68.8 1.1E+02 0.0038 31.5 18.4 170 520-699 4-212 (365)
244 3q0x_A Centriole protein; cent 68.5 6.8 0.00023 39.7 6.0 54 87-140 163-216 (228)
245 2oaj_A Protein SNI1; WD40 repe 68.4 1.1E+02 0.0037 36.7 17.7 147 422-582 17-181 (902)
246 1txd_A RHO guanine nucleotide 68.4 5.7 0.00019 42.8 5.9 46 356-405 330-375 (385)
247 1gu4_A CAAT/enhancer binding p 67.6 11 0.00039 31.7 6.3 34 103-136 37-70 (78)
248 1ic2_A Tropomyosin alpha chain 67.6 16 0.00055 30.8 7.3 56 77-136 13-68 (81)
249 3na7_A HP0958; flagellar bioge 67.2 28 0.00097 35.5 10.6 50 92-141 36-85 (256)
250 2k48_A Nucleoprotein; viral pr 67.2 18 0.00062 32.0 7.6 25 94-118 41-65 (107)
251 1xip_A Nucleoporin NUP159; bet 67.1 87 0.003 33.9 15.1 151 503-681 39-201 (388)
252 2wt7_A Proto-oncogene protein 66.3 12 0.00042 30.0 6.0 35 103-137 24-58 (63)
253 3mpx_A FYVE, rhogef and PH dom 65.9 26 0.00089 38.1 10.7 37 356-399 301-337 (434)
254 3q8t_A Beclin-1; autophagy, AT 65.8 18 0.00063 31.6 7.5 46 91-136 7-52 (96)
255 1qks_A Cytochrome CD1 nitrite 65.8 1.8E+02 0.0062 32.9 25.8 193 468-682 167-382 (567)
256 1jnm_A Proto-oncogene C-JUN; B 65.6 6.9 0.00024 31.3 4.4 34 103-136 23-56 (62)
257 3m91_A Proteasome-associated A 65.6 14 0.00046 28.8 5.8 36 93-128 14-49 (51)
258 3ksy_A SOS-1, SON of sevenless 64.6 22 0.00075 43.8 10.7 38 356-399 509-546 (1049)
259 2yy0_A C-MYC-binding protein; 64.5 11 0.00037 29.5 5.1 30 111-140 21-50 (53)
260 1jmx_B Amine dehydrogenase; ox 64.1 1.2E+02 0.004 30.1 23.5 103 467-582 10-133 (349)
261 4h5i_A Guanine nucleotide-exch 64.0 1.4E+02 0.0048 30.9 20.1 164 520-699 147-331 (365)
262 2ghs_A AGR_C_1268P; regucalcin 63.5 1.3E+02 0.0046 30.5 18.7 161 532-707 72-256 (326)
263 3nw0_A Non-structural maintena 63.1 2.6 8.9E-05 43.1 1.8 32 220-255 179-210 (238)
264 2dfs_A Myosin-5A; myosin-V, in 63.0 37 0.0013 42.0 12.2 12 28-39 923-934 (1080)
265 1kd8_A GABH AIV, GCN4 acid bas 62.5 14 0.00048 26.4 4.8 29 106-134 5-33 (36)
266 3hfq_A Uncharacterized protein 62.5 1.3E+02 0.0045 30.2 24.3 211 456-679 86-325 (347)
267 1pby_B Quinohemoprotein amine 62.3 1.2E+02 0.0042 29.7 23.4 36 647-683 242-279 (337)
268 3dm0_A Maltose-binding peripla 62.3 2.1E+02 0.0072 32.4 26.1 226 453-700 380-622 (694)
269 3i00_A HIP-I, huntingtin-inter 61.3 44 0.0015 30.4 9.4 45 93-137 38-82 (120)
270 4gqb_B Methylosome protein 50; 60.5 1.6E+02 0.0054 30.4 26.2 141 532-684 104-257 (344)
271 1kd8_B GABH BLL, GCN4 acid bas 60.2 19 0.00064 25.7 5.1 29 106-134 5-33 (36)
272 2ymu_A WD-40 repeat protein; u 60.2 1.9E+02 0.0065 31.2 32.3 251 422-707 262-535 (577)
273 4gga_A P55CDC, cell division c 60.1 1.7E+02 0.0058 30.6 31.1 253 425-707 108-391 (420)
274 3vl1_A 26S proteasome regulato 59.9 1.6E+02 0.0055 30.2 28.5 212 432-674 108-366 (420)
275 2vdu_B TRNA (guanine-N(7)-)-me 59.7 1.8E+02 0.0061 30.8 29.1 276 422-711 102-436 (450)
276 3cvf_A Homer-3, homer protein 59.5 7 0.00024 33.1 3.4 30 107-136 11-40 (79)
277 3m48_A General control protein 59.3 13 0.00044 26.1 4.1 27 106-132 4-30 (33)
278 1gmj_A ATPase inhibitor; coile 59.1 51 0.0017 28.1 8.7 54 79-137 25-79 (84)
279 3bas_A Myosin heavy chain, str 59.1 74 0.0025 27.2 10.0 61 79-139 26-86 (89)
280 4fi5_A Nucleoprotein; structur 59.0 31 0.001 30.9 7.6 45 92-136 26-82 (113)
281 3mq9_A Bone marrow stromal ant 58.6 61 0.0021 35.6 12.1 31 106-136 433-463 (471)
282 2xdj_A Uncharacterized protein 58.1 55 0.0019 27.8 8.9 35 92-126 31-65 (83)
283 4gkw_A Spindle assembly abnorm 56.8 60 0.0021 29.8 9.3 65 79-143 16-80 (167)
284 3nok_A Glutaminyl cyclase; bet 56.3 1.9E+02 0.0063 29.8 15.5 170 454-686 52-223 (268)
285 4a2l_A BT_4663, two-component 56.2 2.9E+02 0.0098 32.0 25.1 245 422-699 42-328 (795)
286 1i84_S Smooth muscle myosin he 56.2 24 0.00083 44.0 9.1 37 82-118 900-936 (1184)
287 1foe_A T-lymphoma invasion and 56.1 11 0.00038 40.4 5.4 46 358-405 324-372 (377)
288 3ei3_A DNA damage-binding prot 55.7 2.5E+02 0.0087 34.8 18.1 83 496-582 823-912 (1158)
289 1lwu_C Fibrinogen gamma chain; 55.7 24 0.00083 37.5 7.7 47 91-137 8-54 (323)
290 3qne_A Seryl-tRNA synthetase, 55.6 26 0.00088 39.4 8.3 32 376-407 302-333 (485)
291 2dgc_A Protein (GCN4); basic d 55.2 15 0.00052 29.6 4.6 30 104-133 32-61 (63)
292 3tfm_A Myosin X; split PH doma 54.9 11 0.00038 37.7 4.8 33 282-316 22-54 (228)
293 2ic6_A Nucleocapsid protein; h 54.2 48 0.0016 27.9 7.6 47 91-137 8-66 (78)
294 3p6a_A RHO guanine nucleotide 54.2 40 0.0014 35.8 9.3 40 358-401 334-373 (377)
295 1fho_A UNC-89; pleckstrin homo 54.1 59 0.002 29.4 9.0 101 281-401 10-114 (119)
296 3frx_A Guanine nucleotide-bind 53.9 1.8E+02 0.0063 29.1 26.9 118 453-582 15-137 (319)
297 2v4h_A NF-kappa-B essential mo 53.5 26 0.00089 31.4 6.2 19 66-84 16-34 (110)
298 2ic9_A Nucleocapsid protein; h 53.1 46 0.0016 29.0 7.6 27 92-118 9-35 (96)
299 3t06_A PDZ-rhogef, RHO guanine 52.4 55 0.0019 35.3 10.2 26 375-400 384-409 (418)
300 3ghg_A Fibrinogen alpha chain; 52.3 1E+02 0.0036 34.6 12.1 45 89-133 107-155 (562)
301 2p22_A Suppressor protein STP2 51.4 49 0.0017 32.1 8.4 58 70-127 30-88 (174)
302 1g6u_A Domain swapped dimer; d 51.2 19 0.00066 26.2 4.1 19 118-136 22-40 (48)
303 3oja_A Leucine-rich immune mol 51.1 58 0.002 35.9 10.4 32 92-123 439-470 (487)
304 2ke4_A CDC42-interacting prote 51.1 61 0.0021 28.4 8.3 70 64-138 13-91 (98)
305 2ct0_A Non-SMC element 1 homol 50.2 7.3 0.00025 32.5 2.1 39 220-262 14-57 (74)
306 3o4h_A Acylamino-acid-releasin 50.1 2.9E+02 0.0099 30.3 18.2 140 431-591 31-191 (582)
307 2dq0_A Seryl-tRNA synthetase; 49.8 36 0.0012 37.9 8.3 27 63-89 37-63 (455)
308 1wle_A Seryl-tRNA synthetase; 49.3 65 0.0022 36.3 10.3 32 375-406 334-367 (501)
309 3iox_A AGI/II, PA; alpha helix 49.2 47 0.0016 37.1 8.8 41 93-133 14-58 (497)
310 3na7_A HP0958; flagellar bioge 49.2 58 0.002 33.1 9.2 50 93-142 30-79 (256)
311 2vpj_A Kelch-like protein 12; 48.8 2.1E+02 0.0072 28.3 15.2 36 650-685 201-243 (301)
312 3nol_A Glutamine cyclotransfer 47.7 2.5E+02 0.0084 28.8 15.2 141 545-698 31-188 (262)
313 3tnu_B Keratin, type II cytosk 47.4 1.1E+02 0.0039 27.7 9.9 21 69-89 34-54 (129)
314 3iv1_A Tumor susceptibility ge 47.3 83 0.0028 26.5 8.0 53 81-136 21-73 (78)
315 3mq7_A Bone marrow stromal ant 47.1 67 0.0023 29.0 7.8 27 110-136 72-98 (121)
316 2xzr_A Immunoglobulin-binding 46.9 1.1E+02 0.0038 26.6 8.8 56 81-136 48-103 (114)
317 3vkg_A Dynein heavy chain, cyt 46.6 89 0.003 43.1 12.5 23 18-40 1975-1997(3245)
318 3c3g_A Alpha/beta peptide with 45.8 34 0.0012 23.9 4.4 27 106-132 4-30 (33)
319 1m1j_C Fibrinogen gamma chain; 44.8 1.5E+02 0.0052 32.5 12.0 44 93-136 89-132 (409)
320 3ol1_A Vimentin; structural ge 44.6 1.3E+02 0.0046 26.9 9.8 61 74-134 20-80 (119)
321 2yy0_A C-MYC-binding protein; 44.4 32 0.0011 26.8 4.8 27 107-133 24-50 (53)
322 2zuo_A MVP, major vault protei 44.3 2E+02 0.0068 34.3 13.4 21 17-39 681-701 (861)
323 2xzm_R RACK1; ribosome, transl 44.2 2.6E+02 0.009 28.1 29.8 230 422-678 21-290 (343)
324 3c3f_A Alpha/beta peptide with 44.0 37 0.0013 23.9 4.4 27 106-132 5-31 (34)
325 2oit_A Nucleoporin 214KDA; NH2 43.9 2.2E+02 0.0076 30.4 13.5 112 455-582 149-277 (434)
326 1go4_E MAD1 (mitotic arrest de 43.6 37 0.0013 30.0 5.6 50 110-162 13-66 (100)
327 1ic2_A Tropomyosin alpha chain 43.5 1.4E+02 0.0049 24.8 10.4 46 91-136 9-54 (81)
328 2oxj_A Hybrid alpha/beta pepti 43.2 39 0.0013 23.8 4.4 27 106-132 5-31 (34)
329 2oit_A Nucleoporin 214KDA; NH2 43.2 3.3E+02 0.011 29.0 16.0 118 455-582 92-222 (434)
330 4aow_A Guanine nucleotide-bind 42.6 2.5E+02 0.0086 27.5 27.8 224 453-700 36-276 (340)
331 3bbp_D GRIP and coiled-coil do 41.8 21 0.00072 29.3 3.4 47 90-136 17-63 (71)
332 3swk_A Vimentin; cytoskeleton, 41.1 80 0.0027 26.9 7.3 50 79-128 33-82 (86)
333 3tnu_A Keratin, type I cytoske 41.1 1.1E+02 0.0036 28.0 8.7 9 81-89 48-56 (131)
334 3fvz_A Peptidyl-glycine alpha- 41.0 3E+02 0.01 27.8 17.5 61 647-708 144-224 (329)
335 1i84_S Smooth muscle myosin he 40.6 79 0.0027 39.4 10.2 28 107-134 911-938 (1184)
336 1gd2_E Transcription factor PA 40.4 44 0.0015 27.6 5.2 33 105-137 32-64 (70)
337 3bas_A Myosin heavy chain, str 40.3 82 0.0028 26.9 7.3 50 84-136 13-62 (89)
338 2ocy_A RAB guanine nucleotide 40.2 1.8E+02 0.0063 27.5 10.2 32 105-136 111-142 (154)
339 3trt_A Vimentin; cytoskeleton, 40.1 1.5E+02 0.0052 24.2 10.0 25 111-135 51-75 (77)
340 2p22_C Protein SRN2; endosome, 40.1 2.7E+02 0.0094 27.1 12.3 66 6-105 39-110 (192)
341 1uo4_A General control protein 40.0 40 0.0014 23.8 4.1 27 106-132 5-31 (34)
342 3u1c_A Tropomyosin alpha-1 cha 39.9 1.9E+02 0.0064 25.2 10.6 42 92-133 55-96 (101)
343 2wq1_A General control protein 39.9 47 0.0016 23.2 4.4 27 106-132 4-30 (33)
344 4a2l_A BT_4663, two-component 39.2 5E+02 0.017 29.9 29.2 251 422-699 356-649 (795)
345 1bpo_A Protein (clathrin); cla 39.1 4.5E+02 0.015 29.4 21.6 80 503-582 197-288 (494)
346 1erj_A Transcriptional repress 38.8 3.5E+02 0.012 27.9 21.6 206 457-684 125-352 (393)
347 1zxa_A CGMP-dependent protein 38.7 32 0.0011 28.2 4.1 26 115-140 24-49 (67)
348 3o0z_A RHO-associated protein 38.3 2.8E+02 0.0094 26.6 13.1 50 91-140 100-153 (168)
349 3u1c_A Tropomyosin alpha-1 cha 38.2 2E+02 0.0069 25.0 10.3 41 96-136 31-71 (101)
350 3m9b_A Proteasome-associated A 37.0 38 0.0013 34.6 5.3 40 97-136 56-95 (251)
351 3u06_A Protein claret segregat 37.0 62 0.0021 35.5 7.5 32 76-107 5-36 (412)
352 3scy_A Hypothetical bacterial 36.7 3.4E+02 0.012 27.2 29.9 241 454-710 48-336 (361)
353 2no2_A HIP-I, huntingtin-inter 36.4 1.5E+02 0.0052 26.2 8.6 46 88-136 29-74 (107)
354 3twe_A Alpha4H; unknown functi 36.1 36 0.0012 22.0 3.1 17 120-136 5-21 (27)
355 3htk_A Structural maintenance 35.9 1.5E+02 0.0051 22.9 8.2 29 107-135 24-52 (60)
356 2bni_A General control protein 35.7 42 0.0014 23.7 3.6 27 106-132 5-31 (34)
357 3i00_A HIP-I, huntingtin-inter 35.4 2.2E+02 0.0075 25.8 9.6 36 93-131 27-62 (120)
358 3nok_A Glutaminyl cyclase; bet 35.1 3.9E+02 0.013 27.4 16.3 136 548-698 46-197 (268)
359 1vmg_A Hypothetical protein SS 34.8 1.3E+02 0.0044 26.0 7.7 36 6-41 16-54 (95)
360 2efr_A General control protein 34.7 2.8E+02 0.0095 26.2 10.6 31 106-136 81-111 (155)
361 3vem_A Helicase protein MOM1; 34.0 1.9E+02 0.0064 26.0 8.6 29 108-136 67-99 (115)
362 2hy6_A General control protein 34.0 66 0.0023 22.7 4.4 27 106-132 5-31 (34)
363 1q7f_A NHL, brain tumor CG1071 33.7 3.3E+02 0.011 26.2 16.0 139 557-707 79-234 (286)
364 3m91_A Proteasome-associated A 33.6 1.5E+02 0.005 22.9 6.9 30 107-136 14-43 (51)
365 1wfl_A Zinc finger protein 216 33.4 60 0.002 27.1 4.9 38 221-262 25-62 (74)
366 1fzc_C Fibrin; blood coagulati 33.3 21 0.00071 38.0 2.8 45 93-137 2-46 (319)
367 3u59_A Tropomyosin beta chain; 33.0 2.4E+02 0.0082 24.4 10.3 28 105-132 40-67 (101)
368 3cvf_A Homer-3, homer protein 32.9 1.2E+02 0.004 25.6 6.8 41 94-134 12-52 (79)
369 3a98_B Engulfment and cell mot 32.9 1.2E+02 0.0042 29.8 8.3 90 303-398 52-149 (203)
370 2q2f_A Selenoprotein S; anti-p 32.2 1.3E+02 0.0043 25.7 6.8 25 72-99 38-62 (89)
371 4fla_A Regulation of nuclear P 32.1 2.4E+02 0.0081 26.5 9.7 51 75-128 83-133 (152)
372 2eqb_B RAB guanine nucleotide 32.1 1.7E+02 0.0059 25.6 7.9 34 95-128 26-59 (97)
373 4b6x_A AVRRPS4, avirulence pro 32.0 2.2E+02 0.0076 23.9 8.1 51 81-131 25-84 (90)
374 1t3u_A Conserved hypothetical 32.0 2.5E+02 0.0085 24.2 9.8 24 18-41 22-45 (104)
375 4e61_A Protein BIM1; EB1-like 31.8 78 0.0027 28.2 5.8 29 94-122 10-38 (106)
376 1ci6_A Transcription factor AT 31.6 2E+02 0.0067 22.9 7.9 48 87-134 15-62 (63)
377 3swk_A Vimentin; cytoskeleton, 31.5 1.9E+02 0.0066 24.5 8.1 57 78-134 4-60 (86)
378 2pnv_A Small conductance calci 31.3 81 0.0028 23.5 4.9 28 100-127 14-41 (43)
379 1a93_B MAX protein, coiled coi 31.0 77 0.0026 22.5 4.4 29 100-128 5-33 (34)
380 2eqb_B RAB guanine nucleotide 30.9 2.2E+02 0.0075 24.9 8.4 21 79-99 31-51 (97)
381 1v5m_A SH2 and PH domain-conta 30.5 3.2E+02 0.011 25.3 9.8 99 282-398 19-129 (136)
382 2dq3_A Seryl-tRNA synthetase; 30.5 29 0.00099 38.3 3.5 24 111-134 77-100 (425)
383 3amr_A 3-phytase; beta-propell 30.4 5.3E+02 0.018 27.5 16.4 129 436-573 42-199 (355)
384 3v9f_A Two-component system se 30.3 6.7E+02 0.023 28.7 27.8 251 422-700 362-647 (781)
385 4etp_A Kinesin-like protein KA 30.3 1E+02 0.0035 33.6 7.8 42 95-136 10-58 (403)
386 3plt_A Sphingolipid long chain 30.2 1.6E+02 0.0056 29.7 8.6 58 74-131 97-160 (234)
387 4b4t_L 26S protease subunit RP 30.2 41 0.0014 37.2 4.7 31 106-136 69-99 (437)
388 3lss_A Seryl-tRNA synthetase; 30.1 1.8E+02 0.0063 32.5 10.0 20 11-30 10-29 (484)
389 3he5_A Synzip1; heterodimeric 30.1 1.6E+02 0.0055 21.5 6.1 15 119-133 34-48 (49)
390 1ses_A Seryl-tRNA synthetase; 29.5 60 0.002 35.7 5.8 23 111-133 73-95 (421)
391 3oa7_A Head morphogenesis prot 29.5 1.2E+02 0.004 29.9 7.0 42 95-136 30-71 (206)
392 2dg1_A DRP35, lactonase; beta 29.3 4.2E+02 0.014 26.1 19.4 163 532-707 67-259 (333)
393 2zqm_A Prefoldin beta subunit 29.1 1.4E+02 0.0048 26.0 7.3 65 74-140 1-101 (117)
394 3uul_A Utrophin; spectrin repe 28.8 2.7E+02 0.0091 23.6 10.2 62 73-134 38-110 (118)
395 1rwi_B Serine/threonine-protei 28.6 3.8E+02 0.013 25.3 13.7 142 557-707 26-176 (270)
396 3v9f_A Two-component system se 28.6 7.1E+02 0.024 28.5 26.9 257 422-698 18-330 (781)
397 3mbr_X Glutamine cyclotransfer 28.6 4.6E+02 0.016 26.3 16.2 141 545-698 9-166 (243)
398 2lix_A IMKTX104, potassium cha 34.6 12 0.00041 24.2 0.0 17 616-632 6-22 (27)
399 4h22_A Leucine-rich repeat fli 28.5 2.7E+02 0.0094 24.5 8.6 61 80-140 18-82 (103)
400 3hxj_A Pyrrolo-quinoline quino 28.4 4.3E+02 0.015 25.8 14.8 129 557-700 179-314 (330)
401 1dl6_A Transcription factor II 28.2 40 0.0014 26.6 3.0 34 218-251 8-43 (58)
402 2xzh_A Clathrin heavy chain 1; 28.0 5.9E+02 0.02 27.3 23.1 80 503-582 198-289 (365)
403 2pbi_B Guanine nucleotide-bind 27.8 4.9E+02 0.017 26.3 30.1 253 422-700 64-346 (354)
404 4dk0_A Putative MACA; alpha-ha 27.8 1.6E+02 0.0055 30.8 8.8 36 105-140 118-153 (369)
405 1c1g_A Tropomyosin; contractIl 27.7 4.1E+02 0.014 25.4 13.8 42 93-134 221-262 (284)
406 3s9g_A Protein hexim1; cyclin 27.7 2.5E+02 0.0086 24.5 8.0 24 113-136 62-85 (104)
407 1dh3_A Transcription factor CR 27.6 40 0.0014 26.3 2.8 24 107-130 27-50 (55)
408 2efk_A CDC42-interacting prote 27.4 4.3E+02 0.015 26.5 11.8 86 25-140 90-182 (301)
409 3haj_A Human pacsin2 F-BAR; pa 27.3 3.8E+02 0.013 29.5 12.1 33 95-127 185-217 (486)
410 3cve_A Homer protein homolog 1 27.2 2.1E+02 0.0072 23.7 7.2 32 102-133 14-45 (72)
411 3vkg_A Dynein heavy chain, cyt 27.2 94 0.0032 42.9 8.0 8 108-115 2034-2041(3245)
412 4aow_A Guanine nucleotide-bind 27.0 4.4E+02 0.015 25.6 30.0 234 422-683 38-296 (340)
413 1nr0_A Actin interacting prote 26.9 6.7E+02 0.023 27.6 32.2 250 422-700 190-468 (611)
414 3uun_A Dystrophin; triple heli 26.8 2.9E+02 0.0098 23.3 10.2 62 73-134 38-110 (119)
415 3odw_A RHO guanine nucleotide 26.7 1.6E+02 0.0056 33.1 9.0 27 374-400 499-525 (536)
416 3iz6_a 40S ribosomal protein R 26.6 5.3E+02 0.018 26.3 20.0 236 453-707 64-325 (380)
417 3abh_A Pacsin2, protein kinase 26.5 4.2E+02 0.014 26.9 11.6 42 92-133 140-181 (312)
418 3ni0_A Bone marrow stromal ant 26.5 3.2E+02 0.011 23.7 9.1 23 114-136 65-87 (99)
419 3n06_A Prolactin, PRL; PH depe 25.9 2.3E+02 0.008 27.3 8.8 107 22-132 14-124 (186)
420 2r2v_A GCN4 leucine zipper; co 25.9 1.1E+02 0.0038 21.6 4.4 26 107-132 6-31 (34)
421 3tnu_B Keratin, type II cytosk 25.6 2.9E+02 0.01 24.9 8.9 23 93-115 48-70 (129)
422 1wle_A Seryl-tRNA synthetase; 25.6 2.2E+02 0.0076 31.9 9.7 22 115-136 122-143 (501)
423 1x79_B RAB GTPase binding effe 25.6 2.8E+02 0.0096 24.8 8.3 52 82-136 10-65 (112)
424 1ses_A Seryl-tRNA synthetase; 25.5 81 0.0028 34.6 6.0 30 111-140 66-95 (421)
425 3u59_A Tropomyosin beta chain; 25.4 3.3E+02 0.011 23.5 10.1 42 92-133 55-96 (101)
426 2hqs_A Protein TOLB; TOLB, PAL 25.2 6E+02 0.021 26.5 25.2 114 455-582 178-299 (415)
427 3qne_A Seryl-tRNA synthetase, 25.2 1.4E+02 0.0049 33.4 7.9 24 111-134 80-103 (485)
428 3m9b_A Proteasome-associated A 25.1 65 0.0022 33.0 4.6 38 103-140 55-92 (251)
429 3m7n_A Putative uncharacterize 24.9 36 0.0012 32.8 2.7 33 221-254 140-172 (179)
430 3t97_B Nuclear pore complex pr 24.9 1.3E+02 0.0046 24.3 5.5 34 92-125 14-47 (65)
431 4fm3_A Uncharacterized hypothe 24.8 3E+02 0.01 24.1 8.1 28 105-132 67-94 (98)
432 1uii_A Geminin; human, DNA rep 24.6 1.7E+02 0.0057 24.9 6.3 22 115-136 52-73 (83)
433 1fmh_A General control protein 24.5 1.2E+02 0.0041 20.5 4.2 25 106-130 5-29 (33)
434 3mtu_E Head morphogenesis prot 24.4 2.1E+02 0.0071 24.0 6.7 40 94-133 29-68 (77)
435 2xn4_A Kelch-like protein 2; s 24.3 5.1E+02 0.018 25.4 16.3 37 650-686 199-242 (302)
436 1zgk_A Kelch-like ECH-associat 24.1 5.3E+02 0.018 25.5 16.3 36 650-685 210-252 (308)
437 1nlw_A MAD protein, MAX dimeri 24.1 1.2E+02 0.0041 25.4 5.5 12 30-41 15-26 (80)
438 3ljm_A Coil Ser L9C; de novo d 24.1 1.2E+02 0.004 20.3 4.1 16 106-121 12-27 (31)
439 1joc_A EEA1, early endosomal a 24.0 2.9E+02 0.01 24.8 8.5 33 222-255 70-102 (125)
440 1nkp_B MAX protein, MYC proto- 24.0 82 0.0028 26.3 4.4 12 30-41 16-27 (83)
441 3jzy_A Intersectin 2; C2 domai 23.9 16 0.00056 40.5 0.0 39 356-401 326-364 (510)
442 1cxz_B Protein (PKN); protein- 23.8 3.4E+02 0.012 23.1 8.8 52 76-128 27-82 (86)
443 1nlw_A MAD protein, MAX dimeri 23.7 85 0.0029 26.3 4.4 28 112-139 50-77 (80)
444 1got_B GT-beta; complex (GTP-b 23.7 5.6E+02 0.019 25.6 36.6 235 422-684 55-312 (340)
445 2oqq_A Transcription factor HY 23.5 1.6E+02 0.0056 21.7 5.2 30 105-134 6-35 (42)
446 3ljc_A ATP-dependent protease 23.5 2.2E+02 0.0075 28.5 8.4 29 71-99 185-213 (252)
447 3t97_C Nuclear pore glycoprote 23.5 68 0.0023 25.9 3.6 43 92-134 16-58 (64)
448 1wff_A Riken cDNA 2810002D23 p 23.4 88 0.003 26.8 4.4 39 221-262 25-63 (85)
449 3trt_A Vimentin; cytoskeleton, 23.2 3E+02 0.01 22.3 8.5 23 106-128 53-75 (77)
450 3ra3_B P2F; coiled coil domain 23.1 83 0.0028 20.6 3.1 24 112-135 3-26 (28)
451 1bb1_B Designed, thermostable 23.0 96 0.0033 21.4 3.6 24 75-101 6-29 (36)
452 3v86_A De novo design helix; c 22.8 96 0.0033 20.1 3.4 21 115-135 6-26 (27)
453 2dq0_A Seryl-tRNA synthetase; 22.7 1.8E+02 0.0062 32.2 8.2 25 113-137 73-97 (455)
454 2zet_C Melanophilin; complex, 22.7 54 0.0018 31.1 3.3 36 221-256 68-103 (153)
455 2efr_A General control protein 22.0 5E+02 0.017 24.4 10.0 43 92-134 74-116 (155)
456 1urf_A Protein kinase C-like 1 22.0 3.6E+02 0.012 22.7 9.1 53 75-128 9-69 (81)
457 3t98_B Nucleoporin NUP58/NUP45 21.8 3.9E+02 0.013 23.0 10.3 76 22-131 8-87 (93)
458 3mtu_A Tropomyosin alpha-1 cha 21.7 1.4E+02 0.0048 24.7 5.3 43 93-135 14-63 (75)
459 1nkp_B MAX protein, MYC proto- 21.7 1.1E+02 0.0038 25.4 4.8 22 115-136 53-74 (83)
460 3c75_H MADH, methylamine dehyd 21.6 7.6E+02 0.026 26.7 12.9 39 646-684 177-220 (426)
461 1nkp_A C-MYC, MYC proto-oncoge 21.3 1.8E+02 0.006 24.7 6.0 12 30-41 20-31 (88)
462 2e7s_A RAB guanine nucleotide 21.2 2.2E+02 0.0076 26.3 7.0 37 92-128 43-79 (135)
463 2ymu_A WD-40 repeat protein; u 21.1 7.7E+02 0.026 26.3 31.8 251 422-707 221-494 (577)
464 3u06_A Protein claret segregat 20.9 1.9E+02 0.0065 31.6 7.7 37 91-127 6-42 (412)
465 1jof_A Carboxy-CIS,CIS-muconat 20.7 6.6E+02 0.023 25.3 21.6 149 520-676 158-344 (365)
466 1nfn_A Apolipoprotein E3; lipi 20.7 3.2E+02 0.011 26.4 8.6 24 114-137 133-157 (191)
467 2w6a_A ARF GTPase-activating p 20.5 2.4E+02 0.0082 22.4 5.9 29 73-101 12-47 (63)
468 3ter_A Mammalian stromal inter 20.5 1E+02 0.0034 28.7 4.5 19 95-113 6-24 (136)
469 1m1j_B Fibrinogen beta chain; 20.5 6E+02 0.021 28.2 11.6 21 21-41 88-108 (464)
470 1gk4_A Vimentin; intermediate 20.4 2.4E+02 0.0082 23.6 6.7 43 82-124 12-55 (84)
471 3qh9_A Liprin-beta-2; coiled-c 20.4 3.9E+02 0.013 22.5 9.5 43 95-137 26-75 (81)
472 3ii7_A Kelch-like protein 7; p 20.4 6.2E+02 0.021 24.8 15.4 154 532-698 71-254 (306)
473 1wil_A KIAA1045 protein; ring 20.3 33 0.0011 29.4 1.1 33 222-257 16-48 (89)
474 1t3j_A Mitofusin 1; coiled coi 20.3 1.1E+02 0.0036 26.9 4.3 40 91-136 28-67 (96)
475 1zbd_B Rabphilin-3A; G protein 20.2 58 0.002 30.1 2.9 35 222-257 56-91 (134)
476 3lbx_A Spectrin alpha chain, e 20.2 2.6E+02 0.0089 25.9 7.7 60 74-133 91-158 (161)
477 2e7s_A RAB guanine nucleotide 20.1 1.4E+02 0.0048 27.7 5.4 33 92-124 50-82 (135)
478 2j04_B YDR362CP, TAU91; beta p 20.1 8.9E+02 0.03 26.6 13.6 145 423-579 267-423 (524)
479 2avr_X Adhesion A; antiparalle 20.1 3.2E+02 0.011 24.7 7.6 61 74-134 40-100 (119)
No 1
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=99.86 E-value=5.4e-22 Score=184.00 Aligned_cols=111 Identities=35% Similarity=0.620 Sum_probs=98.0
Q ss_pred cceeeeeeccccccccc-ceEEEEEEEeCcEEEEEecCCCC-CCCCccceeEEeecCCCCeEEEeeccCcccccCCCccc
Q psy3725 281 TAYEGYVKVPKTGGVKK-GWVRQFVVVCDFKLFLYDISPDR-NALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIP 358 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kk-gw~r~~~~l~~~kL~~yd~~~~~-~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip 358 (760)
+.+|||+++|+++|.++ ||+++|++|++++|++||.++++ ... +..+||| +..|+|++|+++||||++++|+|
T Consensus 1 ~~~eGwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~~~~~----p~~~Idl-~~~~~V~~V~~~d~i~~~~~~~p 75 (117)
T 2rov_A 1 SRLEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSN----PYMVLDI-DKLFHVRPVTQTDVYRADAKEIP 75 (117)
T ss_dssp CCSEEEEECCCCSSSSCCCCCEEEEEEETTEEEEESCHHHHHTTC----CSEEECG-GGEEEEEECCTTTCSSSCTTTGG
T ss_pred CceEEEEEeecCCCccCCCcEEEEEEEECCEEEEEECCCCcccCC----ceEEEEC-cccEEEEEcccccccccccccCC
Confidence 46899999999999998 99999999999999999987655 223 4568999 89999999999999999999999
Q ss_pred eeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 359 CIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 359 ~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
+||+|+.+..+.++ ..+++|+|+|+.+|++|+.+|..+
T Consensus 76 ~iF~I~~~~~~~~~-~~~l~l~A~s~~e~~~WV~aL~~~ 113 (117)
T 2rov_A 76 RIFQILYANEGISS-AKNLLLLANSTEEQQKWVSRLVKK 113 (117)
T ss_dssp GEEEEEECSSSSTT-CEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCCC-CcEEEEEeCCHHHHHHHHHHHHHH
Confidence 99999887776444 368999999999999999999865
No 2
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=99.78 E-value=3.4e-19 Score=149.74 Aligned_cols=63 Identities=17% Similarity=0.317 Sum_probs=61.8
Q ss_pred HHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 74 MELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 74 ~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
|++||||||||+||||||.|+|||++||++|+++|++|+|++++|++|..||++|++++++++
T Consensus 10 ~~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 10 VTLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999987
No 3
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=99.53 E-value=6.6e-15 Score=122.24 Aligned_cols=57 Identities=40% Similarity=0.869 Sum_probs=54.1
Q ss_pred CCCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCC
Q psy3725 206 RSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPV 262 (760)
Q Consensus 206 ~~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~ 262 (760)
....+|+|..++|..||+|++|+++|||+.+||++|++|+++||++|...||..|++
T Consensus 8 ~~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~~~C~~ 64 (65)
T 2enz_A 8 KIDMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLCGI 64 (65)
T ss_dssp CCCCCCCEEECCCCSCCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTTSCSCTTT
T ss_pred CCCCCCccEeEcCCCCcCchhcChhheecCCcccccCCCCCccCHhHHhhCcCcCCC
Confidence 346789999999999999999999999999999999999999999999999999975
No 4
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=4.3e-14 Score=123.53 Aligned_cols=64 Identities=36% Similarity=0.777 Sum_probs=57.7
Q ss_pred CCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCCccCCCCC
Q psy3725 207 SSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPPDQTKRP 270 (760)
Q Consensus 207 ~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p~~~~~~~ 270 (760)
...+|+|..++|..||+|++|.++|||+.+||++|.+|+++||++|...||..|+.+....++.
T Consensus 14 ~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~v~~~C~~~~~e~rg~ 77 (85)
T 2eli_A 14 PRSKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLCGMDHTEKRGR 77 (85)
T ss_dssp TTTSCCCEEECCSSCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTTSCSCCCCCCCCCCCC
T ss_pred CCCCcccEeeeCCCCcCCcccCccccccccCCCcCCCcCCccCHhHHhhcCCcCCcchhhCccC
Confidence 4578999999999999999999999999999999999999999999999999998765544433
No 5
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.2e-14 Score=122.12 Aligned_cols=59 Identities=27% Similarity=0.536 Sum_probs=54.6
Q ss_pred CCCCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCC-CCCCC
Q psy3725 205 DRSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPP-SCPVP 263 (760)
Q Consensus 205 ~~~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~-~C~~p 263 (760)
....++|+|..++|.+||+|++|+++|||+.+||++|++|+++||++|...|+. .|+.+
T Consensus 12 ~~~~~~H~F~~~~f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v~~~~C~~~ 71 (74)
T 2db6_A 12 LVNDKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYVEMQRCSGP 71 (74)
T ss_dssp CSCSSBCCEEEEECSSCEECSSSCCEECHHHHEEEEESSSCCEECTTTTGGGSSSBCCCC
T ss_pred cccCCCCceEEeeCCCCcCchhcChhhccccCCccccCCCCCccChhHHhhCCCCcCCCC
Confidence 345788999999999999999999999999999999999999999999999997 59764
No 6
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=99.47 E-value=2.8e-14 Score=122.41 Aligned_cols=58 Identities=36% Similarity=0.709 Sum_probs=54.8
Q ss_pred CCCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCC
Q psy3725 206 RSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVP 263 (760)
Q Consensus 206 ~~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p 263 (760)
...++|.|..++|..||+|++|.++|||+.+|||+|.+|+++||++|...|+..|+.+
T Consensus 19 ~~~~~H~F~~~~f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v~~~C~~~ 76 (77)
T 2enn_A 19 HHVKCHEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDKVIAKCTGS 76 (77)
T ss_dssp EESSSCEEEEECCSSCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSSCCSCCCCC
T ss_pred ccCCCCccEEEcCCCCcCccccChhhccccccccCcCCCCCcCCHhHHhhCcCCCCCC
Confidence 3568999999999999999999999999999999999999999999999999999754
No 7
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.5e-14 Score=123.60 Aligned_cols=61 Identities=34% Similarity=0.689 Sum_probs=56.7
Q ss_pred CCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCCccCC
Q psy3725 207 SSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPPDQT 267 (760)
Q Consensus 207 ~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p~~~~ 267 (760)
..++|+|..++|..||+|++|.++|||+++|||+|.+|+++||++|...|+..|+......
T Consensus 14 ~~~~H~F~~~~~~~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~v~~~C~~~~~~~ 74 (83)
T 2yuu_A 14 YIKNHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKIIGRCTGTAANS 74 (83)
T ss_dssp CGGGCCEEEECCSSCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGTCCSCCSSCCCCC
T ss_pred ccCCCceEeEeCCCCcChhhcChhhccccccccccCCcCCeeChhhhhhCCCcCCCccccC
Confidence 4678999999999999999999999999999999999999999999999999998765443
No 8
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=99.46 E-value=5.9e-15 Score=122.52 Aligned_cols=56 Identities=39% Similarity=0.832 Sum_probs=53.7
Q ss_pred CCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCC
Q psy3725 208 SKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVP 263 (760)
Q Consensus 208 ~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p 263 (760)
..+|+|..++|..|++|++|+++|||+++||++|.+|+++||++|...||..|+++
T Consensus 7 ~~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~~~C~~~ 62 (65)
T 3uej_A 7 VGSHRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLCEFI 62 (65)
T ss_dssp EEECCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTSCSEEEEE
T ss_pred eCCceEEeEeCCCCCcccccChhhhccCceeeECCCCCCeEchhHhhhCCCcCCCc
Confidence 46799999999999999999999999999999999999999999999999999875
No 9
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=99.45 E-value=3.1e-14 Score=111.85 Aligned_cols=50 Identities=44% Similarity=0.967 Sum_probs=49.0
Q ss_pred ceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCC
Q psy3725 211 HQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSC 260 (760)
Q Consensus 211 H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C 260 (760)
|+|..++|.+|++|++|+++|||+.+||++|++|+++||++|...||..|
T Consensus 1 H~F~~~~~~~pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~v~~~C 50 (50)
T 1ptq_A 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 50 (50)
T ss_dssp CCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTSCSCC
T ss_pred CCCEeecCCCCCCcCCCCceeeccCCccCEeCCCCCeECHHHhhhcCCCC
Confidence 89999999999999999999999999999999999999999999999987
No 10
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=99.44 E-value=3.7e-14 Score=118.11 Aligned_cols=56 Identities=38% Similarity=0.828 Sum_probs=50.5
Q ss_pred CCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCC
Q psy3725 207 SSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPV 262 (760)
Q Consensus 207 ~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~ 262 (760)
...+|+|..++|..||+|++|.++|||+.+||++|.+|+++||++|...||..|+.
T Consensus 10 ~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~~~C~~ 65 (66)
T 1y8f_A 10 GGIQHNFEVWTATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLLNADCKL 65 (66)
T ss_dssp ---CCCEEEEECSSCCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHHSCCCC--
T ss_pred CCCCcccEeeeCCCCcChhhcChhhcccCcceeEcCCCCCeeCHHHHhhCcCcCCC
Confidence 35789999999999999999999999999999999999999999999999999953
No 11
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=99.40 E-value=9.8e-14 Score=120.31 Aligned_cols=57 Identities=26% Similarity=0.620 Sum_probs=53.9
Q ss_pred CCCCceeEEeeecCCcccCCCcccccccccC--eeeecCCCccccccccc---ccCCCCCCC
Q psy3725 207 SSKHHQFITRTFTSPTKCNHCTSLMVGLTRQ--GVVCDICGFACHLSCCD---KVPPSCPVP 263 (760)
Q Consensus 207 ~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQ--G~~C~~C~~~cH~kC~~---~vp~~C~~p 263 (760)
...+|.|.+++|..||+|++|+++|||+++| ||+|+.|+++||++|.. .|++.|++.
T Consensus 21 ~~~~H~F~~~~~~~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~k~~~v~~~C~~~ 82 (84)
T 2row_A 21 CHKGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMDKKEEIIAPCKVY 82 (84)
T ss_dssp EETTEEEEEECCSSCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHHHTCTTCCCCSTT
T ss_pred EcCCcceEeEcCCCCcchhhcCHhhhccccCCCCCEecCCCCccchhHhCCccccccccCcC
Confidence 4678999999999999999999999999998 99999999999999999 799999864
No 12
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=99.28 E-value=1.5e-12 Score=106.01 Aligned_cols=52 Identities=27% Similarity=0.662 Sum_probs=49.0
Q ss_pred CCCCceeEE-eeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCC
Q psy3725 207 SSKHHQFIT-RTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCP 261 (760)
Q Consensus 207 ~~~~H~F~~-~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~ 261 (760)
...+|+|.. ++|.+||+|++|+++| ++||++|.+|+++||++|...||..|.
T Consensus 7 ~~~~H~F~~~~~~~~pt~C~~C~~~i---~kqg~kC~~C~~~cH~kC~~~v~~~C~ 59 (59)
T 1rfh_A 7 RGEGHRFVELALRGGPGWCDLCGREV---LRQALRCANCKFTCHSECRSLIQLDCR 59 (59)
T ss_dssp CCSSCCCEECCCSSCCEECTTTCSEE---CSCCEECTTTSCEECHHHHTTCCCCCC
T ss_pred CCCCCcCeeeeccCCCeEchhcchhh---hhCccEeCCCCCeEehhhhhhCcCCCC
Confidence 467899999 9999999999999998 589999999999999999999999983
No 13
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=99.27 E-value=2.2e-12 Score=109.18 Aligned_cols=52 Identities=27% Similarity=0.662 Sum_probs=48.8
Q ss_pred CCCCceeEE-eeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCC
Q psy3725 207 SSKHHQFIT-RTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCP 261 (760)
Q Consensus 207 ~~~~H~F~~-~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~ 261 (760)
...+|+|.. ++|..||+|++|+++| ++||++|.+|+++||++|..+|+..|.
T Consensus 20 ~~~~H~F~~~~~~~~pt~C~~C~~~l---~~qG~kC~~C~~~cHkkC~~~V~~~C~ 72 (72)
T 2fnf_X 20 RGEGHRFVELALRGGPGWCDLCGREV---LRQALRCANCKFTCHSECRSLIQLDCR 72 (72)
T ss_dssp GCSSCCCEECCCCSSCCBCTTTSSBC---SSCCEECTTSSCEECTGGGGGCCSCCC
T ss_pred cCCCCccceeecCCCCcchhhhhHHH---HhCcCccCCCCCeechhhhccCcCCCC
Confidence 357899999 9999999999999998 689999999999999999999999993
No 14
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=99.26 E-value=3.5e-12 Score=100.88 Aligned_cols=50 Identities=32% Similarity=0.811 Sum_probs=47.6
Q ss_pred CCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCC
Q psy3725 209 KHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPV 262 (760)
Q Consensus 209 ~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~ 262 (760)
++|+|..++|..|++|++|+++|| ||++|++|+++||++|...+|..|+.
T Consensus 2 ~~H~F~~~~~~~pt~C~~C~~~l~----qG~~C~~C~~~~H~~C~~~v~~~C~~ 51 (52)
T 1faq_A 2 TTHNFARKTFLKLAFCDICQKFLL----NGFRCQTCGYKFHEHCSTKVPTMCVD 51 (52)
T ss_dssp CCCCCEEECCSSCEECTTSSSEEC----SEEECTTTTCCBCSTTSSSSSSCCCC
T ss_pred CCceeEeEeCCCCcCCCCcccccc----cCCEeCCCCCeEChhHHhhCcCcCCC
Confidence 579999999999999999999998 99999999999999999999999953
No 15
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=101.36 Aligned_cols=54 Identities=24% Similarity=0.632 Sum_probs=50.3
Q ss_pred CCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCC
Q psy3725 208 SKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPV 262 (760)
Q Consensus 208 ~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~ 262 (760)
.++|+|..++|.+|++|++|++.| ++++|||+|.+|++.||++|...+|.+|..
T Consensus 6 ~~~H~F~~kt~~~~~~C~~Cg~~i-~~gkq~~kC~dC~~~cH~~C~~~~~~~C~p 59 (61)
T 4b6d_A 6 MRLHDFVSKTVIKPESCVPCGKRI-KFGKLSLKCRDCRVVSHPECRDRCPLPCIP 59 (61)
T ss_dssp BCCCCEEEEECCSCEECTTTCCEE-CTTCEEEEESSSSCEECGGGGGGSCSSCCC
T ss_pred ccceeEEeeeccCCcccccccCEE-EEeeEeeECCCCCCeEchhHhhcCCCCCCC
Confidence 578999999999999999999876 599999999999999999999999999953
No 16
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.11 E-value=1.4e-11 Score=145.41 Aligned_cols=90 Identities=28% Similarity=0.558 Sum_probs=14.1
Q ss_pred CCCCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCCccCCC-------CCC------
Q psy3725 205 DRSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPPDQTK-------RPL------ 271 (760)
Q Consensus 205 ~~~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p~~~~~-------~~~------ 271 (760)
.+..++|.|..++|.+||+|++|+++|||+++||++|..|+++||++|..+|+..|+....... ..+
T Consensus 32 ~~~~~~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~~ 111 (674)
T 3pfq_A 32 VHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYS 111 (674)
T ss_dssp ----------------------------------------------------------------------CCCCCEECCS
T ss_pred CcccCCceEEeeeCCCCCccccccccccccCCceeECCCCCCCcChhhcCcCcccCCCcccccccccccCCcceeecCCC
Confidence 4557899999999999999999999999999999999999999999999999999976543221 111
Q ss_pred CCCCCCCCCcceeeeeecccccc
Q psy3725 272 GIDPTRGIGTAYEGYVKVPKTGG 294 (760)
Q Consensus 272 ~id~~~~~Gt~~eG~vkvp~~~~ 294 (760)
.......||..+.|..+++..|.
T Consensus 112 ~~~~C~~C~~~l~g~~~qg~~C~ 134 (674)
T 3pfq_A 112 SPTFCDHCGSLLYGLIHQGMKCD 134 (674)
T ss_dssp SCCCCSSSCSCCBBSSSCEECCS
T ss_pred CCCCCCccccccchhhcCccccc
Confidence 11234678888888766555543
No 17
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=99.07 E-value=2.4e-11 Score=137.35 Aligned_cols=86 Identities=34% Similarity=0.600 Sum_probs=72.1
Q ss_pred CCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCCccCCCCCCCCCCC----------
Q psy3725 207 SSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPPDQTKRPLGIDPT---------- 276 (760)
Q Consensus 207 ~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p~~~~~~~~~id~~---------- 276 (760)
..+.|.|..++|..|++|++|+++|||+.+||++|.+|+++||++|...+|..|+.+....++.||++..
T Consensus 206 iv~~h~f~~~~~~~pt~C~~C~~~l~g~~~qg~~C~~C~~~~Hk~C~~~vp~~C~~~~~~~~~vFG~~L~~~~~~~~~~v 285 (463)
T 3cxl_A 206 YEKIHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHTTKR 285 (463)
T ss_dssp -CBCCCEEEECCSSCCBCTTTCCBCCSSSCCEEEETTTCCEECHHHHTTSCSBCCGGGGGCCCCTTSCHHHHHHHHTCSS
T ss_pred cCCCcceEEeecCCCCcchhhhhhhhhHHhcCeeccccCccccccccccccccccccccccccccccccchhhhccCCCC
Confidence 4678999999999999999999999999999999999999999999999999998876666667776542
Q ss_pred -----------CCCCcceeeeeecccc
Q psy3725 277 -----------RGIGTAYEGYVKVPKT 292 (760)
Q Consensus 277 -----------~~~Gt~~eG~vkvp~~ 292 (760)
...|...||.+|++..
T Consensus 286 P~iv~~~i~~le~~gl~~eGIfR~sG~ 312 (463)
T 3cxl_A 286 PMVVDMCIREIESRGLNSEGLYRVSGF 312 (463)
T ss_dssp CHHHHHHHHHHHHHCSCSTTTTTSCCC
T ss_pred CeeHHHHHHHHHhcCCCCCceeEecCC
Confidence 1245666787777654
No 18
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=99.00 E-value=2.4e-10 Score=89.15 Aligned_cols=46 Identities=35% Similarity=0.824 Sum_probs=42.0
Q ss_pred CCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCC
Q psy3725 208 SKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPP 258 (760)
Q Consensus 208 ~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~ 258 (760)
..+|+|..++|. +++|++|+++|| ||++|.+|+|+||.+|+..||+
T Consensus 2 ~i~HrF~~~t~~-~t~C~~C~k~i~----~G~kC~~Ck~~cH~kC~~~vp~ 47 (49)
T 1kbe_A 2 SVTHRFSTKSWL-SQVCNVCQKSMI----FGVKCKHCRLKCHNKCTKEAPA 47 (49)
T ss_dssp CCCCCEEEECCS-SCCCSSSCCSSC----CEEEETTTTEEESSSCTTTSCC
T ss_pred CCCcccCccCCC-CcCccccCceeE----CcCCCCCCCCccchhhcCcCCC
Confidence 357999999998 599999999998 7999999999999999998774
No 19
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=98.88 E-value=6.9e-10 Score=128.98 Aligned_cols=62 Identities=27% Similarity=0.572 Sum_probs=50.9
Q ss_pred CCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCCccCCCC
Q psy3725 207 SSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPPDQTKR 269 (760)
Q Consensus 207 ~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p~~~~~~ 269 (760)
..++|.|...+|..||+|++|++++||+++||++|..|+++||++|+..|| .|+.++...+.
T Consensus 515 ~~~~H~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v~-~C~~~~~~~~~ 576 (587)
T 3ky9_A 515 TANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRVP-PCGRHGQDFPG 576 (587)
T ss_dssp TGGGCCEEEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGSC-CC---------
T ss_pred cccCCceeEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhcCC-CCCCCCcccCC
Confidence 467899999999999999999999999999999999999999999999995 89887644333
No 20
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=98.72 E-value=4.9e-09 Score=116.18 Aligned_cols=56 Identities=32% Similarity=0.673 Sum_probs=50.8
Q ss_pred CCCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCC
Q psy3725 207 SSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVP 263 (760)
Q Consensus 207 ~~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p 263 (760)
...+|.|..+++..||+|.+|+.++||+.+||+.|..||++||++|+..||. |+..
T Consensus 343 ~~~~h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~~-C~~~ 398 (406)
T 2vrw_B 343 TANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVPP-CGRH 398 (406)
T ss_dssp TGGGCCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSCC-C---
T ss_pred cCCCCCCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCCC-CCCC
Confidence 3578999999999999999999999999999999999999999999999995 9765
No 21
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=98.57 E-value=4.7e-07 Score=81.44 Aligned_cols=104 Identities=16% Similarity=0.299 Sum_probs=72.1
Q ss_pred cceeeeeecccccccccceEEEEEEE-eCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeecc-CcccccCCCccc
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVV-CDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRE-SDVIHATKKDIP 358 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l-~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~-sdvi~a~~~dip 358 (760)
...+||+. +.++..+.|+++|++| .+..|.+|....+. .+...|+|....+.+..+.. .++-....+.-|
T Consensus 5 ~~~~G~L~--K~g~~~k~WkkR~fvL~~~~~L~yyk~~~~~------~~~g~i~l~~~~i~l~~~~~v~~v~~~~~~~~~ 76 (112)
T 3aj4_A 5 FVKSGWLL--RQSTILKRWKKNWFDLWSDGHLIYYDDQTRQ------NIEDKVHMPMDCINIRTGQECRDTQPPDGKSKD 76 (112)
T ss_dssp CSEEEEEE--EECSSSCCEEEEEEEECTTSEEEEESSTTCC------SEEEEEEHHHHEEEEEEGGGCCSCCCSTTCCGG
T ss_pred eeEEEEEE--eeCCCCCCeeceEEEEeeCCEEEEEcCCCCC------CCCccccccccceeecccccccccCCCCCCCcC
Confidence 45789985 3455678999999999 89999999765543 23456777665555554321 111112233448
Q ss_pred eeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 359 CIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 359 ~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
+.|.|.+. . ..+++|.|+|+.++++|+.+|+++.
T Consensus 77 ~~F~i~~~-----~-~r~~~l~a~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 77 CMLQIVCR-----D-GKTISLCAESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp GEEEEEET-----T-SCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEEec-----C-CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 89999632 1 3578999999999999999999875
No 22
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=1.7e-06 Score=77.83 Aligned_cols=102 Identities=18% Similarity=0.323 Sum_probs=74.6
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
..++||+. +.++..+.|+++|++|.+..|++|....+. .+...|+|.+ ...|..+.. ...-|+.
T Consensus 8 ~~~~G~L~--K~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~------~~~g~i~L~~-~~~v~~~~~-------~~~~~~~ 71 (115)
T 2dn6_A 8 VLKQGYMM--KKGHRRKNWTERWFVLKPNIISYYVSEDLK------DKKGDILLDE-NCCVESLPD-------KDGKKCL 71 (115)
T ss_dssp CSEEEEEE--EECTTSSCEEEEEEEECSSCEEEESSTTCS------SEEEEECCCT-TCEEEEECC-------CTTCCSE
T ss_pred ceEEEEEE--ecCCCCCCcEEeEEEEECCEEEEeCCCCCc------ccCcEEEecC-cEEEEECCC-------CCCCeeE
Confidence 46899985 344567899999999999999999865443 2456788843 334444422 1234689
Q ss_pred eeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHhhcC
Q psy3725 361 FRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILKRNN 405 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~~~~ 405 (760)
|.|.+. ...++|.|+|+.++++|+.+|+.+....+...
T Consensus 72 F~i~~~-------~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~~~~ 109 (115)
T 2dn6_A 72 FLVKCF-------DKTFEISASDKKKKQEWIQAIHSTIHLLKLGS 109 (115)
T ss_dssp EEEECS-------SCEEEEECSSHHHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEEeC-------CCEEEEEcCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 999632 25789999999999999999999988766553
No 23
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.50 E-value=1.5e-06 Score=78.49 Aligned_cols=91 Identities=12% Similarity=0.227 Sum_probs=67.1
Q ss_pred cceeeeeecccccc-cccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccce
Q psy3725 281 TAYEGYVKVPKTGG-VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPC 359 (760)
Q Consensus 281 t~~eG~vkvp~~~~-~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~ 359 (760)
..++||+. +.++ ..++|+++|++|.+..|++|....+.. +...|+|.+ ...|..+. |+
T Consensus 8 ~~~~G~L~--K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~------~~g~i~l~~-~~~v~~~~------------~~ 66 (115)
T 2cod_A 8 KVKSGWLD--KLSPQGKRMFQKRWVKFDGLSISYYNNEKEMY------SKGIIPLSA-ISTVRVQG------------DN 66 (115)
T ss_dssp CCEEEEEE--ECCSSSSSCCEEEEEEECSSEEEEEESSCCSS------CCCEEETTT-EEEEEEET------------TT
T ss_pred ccEEEEEE--EcCCCCCCCCceEEEEEECCEEEEEcCCCCcc------cCCEEECCc-ceEEEeCC------------CC
Confidence 45899995 4444 568999999999999999998766532 234677733 23333321 68
Q ss_pred eeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 360 IFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 360 if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
.|.|.+ + ...++|.|+|+.++++|+.+|+.+..
T Consensus 67 ~F~i~~-----~--~r~~~l~a~s~~e~~~Wi~~l~~~~~ 99 (115)
T 2cod_A 67 KFEVVT-----T--QRTFVFRVEKEEERNDWISILLNALK 99 (115)
T ss_dssp EEEEEE-----S--SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEEe-----C--CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 899962 2 25689999999999999999998764
No 24
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=98.48 E-value=4.6e-07 Score=79.05 Aligned_cols=90 Identities=16% Similarity=0.228 Sum_probs=65.5
Q ss_pred eeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeee
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFR 362 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~ 362 (760)
-+||+ .|.++..++|+++|++|.+..|.+|....+....| ...++|.+-.... ...-|+.|.
T Consensus 3 k~G~L--~K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~~~~~~----~~~i~l~~~~~~~------------~~~~~~~F~ 64 (94)
T 2rsg_A 3 RCGVL--SKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGC----RGSICLSKAVITP------------HDFDECRFD 64 (94)
T ss_dssp EEEEE--EEESSSTTCEEEEEEEEETTEEEEESSTTGGGTCC----SEEEETTTCEEEE------------CSSCSSEEE
T ss_pred EEEEE--EEeCCCCCCceEEEEEEECCEEEEEEecccccccc----eeeEecceeeeec------------CcccceeEE
Confidence 46888 35567778999999999999999998766554433 3467774422111 112357788
Q ss_pred eecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 363 ITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 363 it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
|.+. ..+++|.|+|+.++++|+.+|+++
T Consensus 65 i~~~-------~r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 65 ISVN-------DSVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp EEET-------TEEEEEECCSSCCTHHHHHHHHHH
T ss_pred EEeC-------CeEEEEECCCHHHHHHHHHHHHhh
Confidence 8632 357899999999999999999876
No 25
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.48 E-value=1.5e-06 Score=77.83 Aligned_cols=95 Identities=22% Similarity=0.403 Sum_probs=68.1
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
..++||+. +.++..++|+++|++|.+..|++|....+.. +...|+|.+ ..+..+.. ...-|+.
T Consensus 8 ~~~~G~L~--K~~~~~~~Wk~RwfvL~~~~L~yyk~~~~~~------~~~~i~L~~--~~~~~~~~-------~~~~~~~ 70 (109)
T 1wgq_A 8 STMSGYLY--RSKGSKKPWKHLWFVIKNKVLYTYAASEDVA------ALESQPLLG--FTVTLVKD-------ENSESKV 70 (109)
T ss_dssp CSCEEEEE--EESSTTSCCEEEEEEEETTEEEEESCTTCSS------CSEEEECSS--EEEEECCC-------SSCSSSE
T ss_pred CeEEEEEE--eCCCCCCCceeEEEEEeCCEEEEECCCCcCc------cCceEECCC--CEEEECCC-------CCCCCcE
Confidence 45899996 4455678999999999999999998665432 344677743 23322221 1123789
Q ss_pred eeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 361 FRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
|.|.+. . +.+++|.|+|+.++++|+.+|..+.
T Consensus 71 F~i~~~-----~-~~~~~~~a~s~~e~~~Wi~al~~a~ 102 (109)
T 1wgq_A 71 FQLLHK-----G-MVFYVFKADDAHSTQRWIDAFQEGT 102 (109)
T ss_dssp EEEEET-----T-EEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEeC-----C-CeEEEEECCCHHHHHHHHHHHHHHh
Confidence 999632 1 3578999999999999999998774
No 26
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=98.47 E-value=4.8e-07 Score=80.12 Aligned_cols=93 Identities=23% Similarity=0.290 Sum_probs=65.5
Q ss_pred eeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeee
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFR 362 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~ 362 (760)
|+||+. |.++..++|+++|++|.+..|.+|....+....| ...|+|. ..+|.... +-|+.|.
T Consensus 1 ~eG~L~--K~g~~~k~Wk~R~fvL~~~~L~Yy~~~~~~~~~~----~g~i~L~--~~~v~~~~----------~~~~~F~ 62 (103)
T 3rcp_A 1 MEGVLY--KWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGS----KGSIKMA--VCEIKVHS----------ADNTRME 62 (103)
T ss_dssp CEEEEE--EECCTTTCEEEEEEEEETTEEEEESSCC---CCC----SCEEEGG--GCEEECCT----------TCSSEEE
T ss_pred CceEEE--EccCCCCCeeceEEEEECCEEEEEecCCcccCCc----ccEEEee--eeEEEEcC----------CCCceEE
Confidence 689984 4556678999999999999999998776543223 3467774 23332211 1267889
Q ss_pred eecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 363 ITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 363 it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
|.+ |+ ..+++|.|+|+.++++|+.+|+.+..
T Consensus 63 i~~-----~~-~r~~~l~a~s~~e~~~Wi~al~~a~~ 93 (103)
T 3rcp_A 63 LII-----PG-EQHFYMKAVNAAERQRWLVALGSSKA 93 (103)
T ss_dssp EEE-----TT-TEEEEEECSSHHHHHHHHHHHHTTSC
T ss_pred EEe-----CC-CCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 863 22 35899999999999999999987754
No 27
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=2.7e-06 Score=77.38 Aligned_cols=101 Identities=21% Similarity=0.338 Sum_probs=71.1
Q ss_pred CCcceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccc
Q psy3725 279 IGTAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIP 358 (760)
Q Consensus 279 ~Gt~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip 358 (760)
....++||+..-. +...+.|+++|++|.+..|.+|....+.. +...|+|.+-. |..|...| ...-|
T Consensus 20 ~~~~~~G~L~K~~-~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~------~~g~i~L~~~~--v~~~~~~~-----~~~~~ 85 (122)
T 2yry_A 20 APVTKAGWLFKQA-SSGVKQWNKRWFVLVDRCLFYYKDEKEES------ILGSIPLLSFR--VAAVQPSD-----NISRK 85 (122)
T ss_dssp CCEEEEEEEEEEC-CSSSCCEEEEEEEEETTEEEEESSTTCCS------CCEEEESTTCC--CEECCTTC-----SCSSS
T ss_pred CCccEEEEEEEEC-CCCCCCcEEEEEEEeCCEEEEECCCCCCC------cccEEEcCCCE--EEEcCccc-----cCCcc
Confidence 3456899995321 12468999999999999999997665432 34578886543 44443322 23447
Q ss_pred eeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 359 CIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 359 ~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
+.|.|... . ...++|.|+|+.++++|+.+|+.+.+
T Consensus 86 ~~F~i~~~-----~-~r~~~l~a~s~~e~~~Wi~al~~a~~ 120 (122)
T 2yry_A 86 HTFKAEHA-----G-VRTYFFSAESPEEQEAWIQAMGEAAR 120 (122)
T ss_dssp SEEEEECS-----S-SCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred cEEEEecC-----C-CcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 89999522 1 35789999999999999999988753
No 28
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=98.43 E-value=4.3e-06 Score=76.66 Aligned_cols=101 Identities=16% Similarity=0.278 Sum_probs=71.5
Q ss_pred CCCcceeeeeecccccc-cccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCc
Q psy3725 278 GIGTAYEGYVKVPKTGG-VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKD 356 (760)
Q Consensus 278 ~~Gt~~eG~vkvp~~~~-~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~d 356 (760)
.....++||+. +.++ ..++|+++|++|.+..|++|....+. .+...|+|.+ ..|..+...+ ...
T Consensus 18 ~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~------~~~g~i~L~~--~~v~~~~~~~-----~~~ 82 (128)
T 2dkp_A 18 NAPVVRRGWLY--KQDSTGMKLWKKRWFVLSDLCLFYYRDEKEE------GILGSILLPS--FQIALLTSED-----HIN 82 (128)
T ss_dssp TSCCCEEEEEE--EECCSSSCCEEEEEEEEETTEEEEESSTTCC------SEEEEECGGG--SEEEECCGGG-----CCS
T ss_pred CCCcEEEEEEE--EeCCCCCCCceeEEEEEeCCEEEEECCCCCc------ccceEEEcCc--eEEEEcCCcc-----cCC
Confidence 34456899994 3333 56889999999999999999865543 2456788844 4554443222 224
Q ss_pred cceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 357 IPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 357 ip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
-|+.|.|.+. . ...++|.|+|+.++++|+.+|+.+..
T Consensus 83 ~~~~F~i~~~-----~-~r~~~l~a~s~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 83 RKYAFKAAHP-----N-MRTYYFCTDTGKEMELWMKAMLDAAL 119 (128)
T ss_dssp SCSEEEEECS-----S-SCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred CCeEEEEEcC-----C-CCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 5689999632 1 24689999999999999999987753
No 29
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=98.43 E-value=3e-06 Score=82.34 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=70.2
Q ss_pred CCcceeeeee-cccc--cccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCC
Q psy3725 279 IGTAYEGYVK-VPKT--GGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKK 355 (760)
Q Consensus 279 ~Gt~~eG~vk-vp~~--~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~ 355 (760)
....+||++- -+.. ....+.|+++|++|.+..|.+|+.+.+.. .| ...|+|. +...|..|...+ .....
T Consensus 13 ~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~~-~~----~G~I~L~-~~~~v~~~~~~~--~~~~~ 84 (164)
T 2lul_A 13 FNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKK-YR----KGFIDVS-KIKCVEIVKNDD--GVIPC 84 (164)
T ss_dssp SSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSSC-CC----CCEEEGG-GCCEEEECCCCS--SSCCS
T ss_pred CCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCccc-cc----ccEEEEe-eeEEEEeccccc--cCccc
Confidence 3467899983 2211 11235699999999999999997654332 12 2357773 333455554433 22234
Q ss_pred ccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 356 DIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 356 dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
+.++.|.|.+. ..+++|.|+|+.|+++|+.+|.++.+
T Consensus 85 ~~~~~f~i~t~-------~rt~~l~A~s~~e~~~Wi~aL~~~i~ 121 (164)
T 2lul_A 85 QNKYPFQVVHD-------ANTLYIFAPSPQSRDLWVKKLKEEIK 121 (164)
T ss_dssp SSCSEEEEECS-------SCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred ccceeEEEecC-------CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 56788998633 25799999999999999999887754
No 30
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=98.42 E-value=2.2e-06 Score=76.31 Aligned_cols=100 Identities=21% Similarity=0.341 Sum_probs=67.7
Q ss_pred cceeeeeecccccccccceEEEEEEEeCc--EEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccc
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDF--KLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIP 358 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~--kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip 358 (760)
...+||+. +.++..+.|+++|++|.+. .|++|+...+. .+...|+|.+ ..|..+... ....+.+-|
T Consensus 7 ~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~~~------~~~g~i~L~~--~~v~~~~~~--~~~~~~~~~ 74 (109)
T 2i5f_A 7 IIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAE------DPLGAIHLRG--CVVTSVESN--SNGRKSEEE 74 (109)
T ss_dssp EEEEEEEE--EECTTTCCEEEEEEEEETTTTEEEEECTTSCS------SCSEEEECTT--CEEEEECC----------CC
T ss_pred eeEEEEEE--EcCCCCCCceEEEEEEeCCCcEEEEECCCCCC------CccEEEECCC--CEEEEccCC--cccccCCCc
Confidence 35789985 3455678899999999986 89999755432 2345788866 345444321 111233468
Q ss_pred eeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 359 CIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 359 ~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
+.|.|.+. . +..++|.|+|+.++++|+.+|+.+.
T Consensus 75 ~~F~i~~~-----~-~~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 75 NLFEIITA-----D-EVHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp SEEEEECT-----T-CCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred eEEEEEeC-----C-CCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 99999643 2 3568999999999999999998763
No 31
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.40 E-value=4.6e-06 Score=74.98 Aligned_cols=100 Identities=20% Similarity=0.327 Sum_probs=71.6
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
..++||+. +.++..++|+++|++|.+..|++|....+. .+...|+|.+-. .+... .....-|+.
T Consensus 5 ~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~------~~~g~i~L~~~~-~~~~~-------~~~~~~~~~ 68 (113)
T 1pls_A 5 RIREGYLV--KKGSVFNTWKPMWVVLLEDGIEFYKKKSDN------SPKGMIPLKGST-LTSPC-------QDFGKRMFV 68 (113)
T ss_dssp CSEEEEEE--EESSSSSCCEEEEEEEETTEEEEESSTTCS------SCSEEEESSSCC-EESSC-------CSSCCSSSE
T ss_pred CcEEEEEE--EeCCCCCCceEEEEEEECCEEEEEeCCCCC------CcceEEEcCCCE-EEEec-------CCCCCCccE
Confidence 45799995 455667899999999999999999865432 234568875432 22111 112345789
Q ss_pred eeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHh
Q psy3725 361 FRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILK 402 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~ 402 (760)
|.|.+. . +..++|.|+|+.++++|+.+|+.+.....
T Consensus 69 F~i~~~-----~-~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~ 104 (113)
T 1pls_A 69 FKITTT-----K-QQDHFFQAAFLEERDAWVRDINKAIKCIE 104 (113)
T ss_dssp EEEEET-----T-TEEEEEECSSHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEcC-----C-CCEEEEECCCHHHHHHHHHHHHHHHhccc
Confidence 999642 1 35789999999999999999998876543
No 32
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.40 E-value=3e-06 Score=76.39 Aligned_cols=99 Identities=24% Similarity=0.351 Sum_probs=67.2
Q ss_pred cceeeeeecccccccccceEEEEEEEe--CcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCccccc-CCCcc
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVC--DFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHA-TKKDI 357 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~--~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a-~~~di 357 (760)
..++||+. +.++..++|+++|++|. +..|++|....+.. +...|+|.+ ...|..+. +...+ ...+-
T Consensus 8 ~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~------~~g~i~L~~-~~~v~~~~--~~~~~~~~~~~ 76 (117)
T 1v5u_A 8 RSYEGILY--KKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTE------CKGVIDLAE-VEAVAPGT--PTIGAPKTVDE 76 (117)
T ss_dssp SSEEEEEE--ECCCSSSCCEEEEEEEETTTTEEEEESSSSCSS------CCCEEEGGG-EEEEECCC--CCTTSCSSSCT
T ss_pred ccEEEEEE--ecCCCCCCceeeEEEEECCCCEEEEeecCCCCc------cceEEEccC-cEEEeecC--ccccccccCCC
Confidence 46899984 44455789999999999 88999998665433 234677743 22222221 11122 12345
Q ss_pred ceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 358 PCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 358 p~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
++.|.|.+. ...++|.|+|+.++++|+.+|+.+
T Consensus 77 ~~~F~i~~~-------~r~~~l~a~s~~e~~~Wi~al~~~ 109 (117)
T 1v5u_A 77 KAFFDVKTT-------RRVYNFCAQDVPSAQQWVDRIQSC 109 (117)
T ss_dssp TTCEEEEES-------SCEEEEECSSHHHHHHHHHHHHTT
T ss_pred CeEEEEECC-------CceEEEECCCHHHHHHHHHHHHHH
Confidence 689999532 357899999999999999999765
No 33
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.40 E-value=3e-06 Score=78.89 Aligned_cols=105 Identities=12% Similarity=0.179 Sum_probs=68.6
Q ss_pred cceeeeeecccccccccceEEEEEEE-eCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEe-eccCcccccCCCccc
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVV-CDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSG-VRESDVIHATKKDIP 358 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l-~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~-V~~sdvi~a~~~dip 358 (760)
...+||+. |.++..+.|+++|+|| .+..|++|....+.. +...|.+.-....|.. -...++.......-+
T Consensus 8 v~~~G~L~--K~g~~~k~WkkRwFVL~~~~~L~Yyk~~~~~~------~~g~i~l~~~~~~i~~~~~~~~v~~~~~~~~~ 79 (130)
T 2d9v_A 8 LVRGGWLW--RQSSILRRWKRNWFALWLDGTLGYYHDETAQD------EEDRVVIHFNVRDIKVGQECQDVQPPEGRSRD 79 (130)
T ss_dssp EEEEEEEE--EECSSSCCEEEEEEEEETTTEEEEESSSSTTS------EEEEEECTTTEEEEEEGGGCSSCCCCSSCCTT
T ss_pred eeEEEEEE--eecCccCCceeeEEEEccCCEEEEEeCCCCCC------cCceEecccceeEEeccccccccCCCCCCCcC
Confidence 35899984 4456678999999999 799999997654432 2223444322223321 111222222234457
Q ss_pred eeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 359 CIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 359 ~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
+.|.|.+. . +.+++|.|+|+.|+++|+.+|+.+..
T Consensus 80 ~~F~I~~~----~--~r~~~l~A~s~~e~~~Wi~al~~a~~ 114 (130)
T 2d9v_A 80 GLLTVNLR----E--GSRLHLCAETRDDAIAWKTALMEANS 114 (130)
T ss_dssp TEEEEEET----T--SCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred cEEEEEeC----C--CCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 89999642 1 24789999999999999999998754
No 34
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=98.39 E-value=3.8e-06 Score=76.53 Aligned_cols=99 Identities=17% Similarity=0.295 Sum_probs=70.2
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
..++||+..-. ++..++|+++|++|.+..|.+|....+.. +...|+|.+ +.|..+... ...+-++.
T Consensus 11 ~~~~G~L~K~~-~~~~~~WkkR~fvL~~~~L~yy~~~~~~~------~~g~i~l~~--~~v~~~~~~-----~~~~~~~~ 76 (123)
T 1upq_A 11 VHIRGWLHKQD-SSGLRLWKRRWFVLSGHCLFYYKDSREES------VLGSVLLPS--YNIRPDGPG-----APRGRRFT 76 (123)
T ss_dssp EEEEEEEEEEC-SSSSCCEEEEEEEEETTEEEEESSTTCCS------CCEEEEGGG--CEEEECCSS-----CTTSSSSE
T ss_pred ceEEEEEEeeC-CCCCCCceeEEEEEeCCEEEEECCCCCcc------cceEEECCC--CEEEECCCC-----ccCCCcEE
Confidence 46899995332 12457899999999999999997655432 345677755 455444321 23345789
Q ss_pred eeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 361 FRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
|.|.+. + ...++|.|+|+.++.+|+.+|+.+..
T Consensus 77 f~i~~~-----~-~r~~~l~a~s~~e~~~Wi~al~~a~~ 109 (123)
T 1upq_A 77 FTAEHP-----G-MRTYVLAADTLEDLRGWLRALGRASR 109 (123)
T ss_dssp EEEECT-----T-SCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred EEEECC-----C-CeEEEEECCCHHHHHHHHHHHHHHHh
Confidence 999532 2 25689999999999999999998864
No 35
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=98.39 E-value=3.5e-06 Score=76.96 Aligned_cols=100 Identities=20% Similarity=0.409 Sum_probs=69.7
Q ss_pred ceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceee
Q psy3725 282 AYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIF 361 (760)
Q Consensus 282 ~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if 361 (760)
..+||+. +.++..++|+++|++|.+..|++|....+.. +...|+|.+ .+|..+.. .+-|..|
T Consensus 6 ~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~------~~g~i~L~~--~~v~~~~~--------~~~~~~f 67 (127)
T 1fgy_A 6 DREGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKE------PRGIIPLEN--LSIREVLD--------PRKPNCF 67 (127)
T ss_dssp SEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS------CSEEEECTT--CEEEEECC--------SSCSSEE
T ss_pred ceEeEEE--EECCCCCCeEEEEEEEECCEEEEeCCCCCCC------cceEEECCc--eEEEEccC--------CCCCceE
Confidence 5789984 4455678999999999999999998654432 345688865 34544432 2457888
Q ss_pred eeecccCC----------CC-----CCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 362 RITTSLMD----------PP-----GTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 362 ~it~s~l~----------~~-----~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
.|....-. .+ .....++|.|+|+.++++|+.+|+.+..
T Consensus 68 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~ 120 (127)
T 1fgy_A 68 ELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS 120 (127)
T ss_dssp EEECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEecCCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhc
Confidence 88643210 00 0124789999999999999999987754
No 36
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=4.1e-06 Score=75.45 Aligned_cols=98 Identities=20% Similarity=0.336 Sum_probs=69.8
Q ss_pred Ccceeeeeeccccc-ccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccc
Q psy3725 280 GTAYEGYVKVPKTG-GVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIP 358 (760)
Q Consensus 280 Gt~~eG~vkvp~~~-~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip 358 (760)
...++||+.- .+ ...+.|+++|++|.+..|++|+...+.. +...|+|.+- .|..+...| ...-|
T Consensus 10 ~~~~~G~L~K--~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~------~~g~i~L~~~--~v~~~~~~~-----~~~~~ 74 (117)
T 2d9y_A 10 PVTKAGWLFK--QASSGVKQWNKRWFVLVDRCLFYYKDEKEES------ILGSIPLLSF--RVAAVQPSD-----NISRK 74 (117)
T ss_dssp CCCEEEEEEE--ECTTSSSCEEEEEEEEETTEEEEESSTTCCS------CCEEEECSSC--EEEECCTTT-----TCCCS
T ss_pred CeeEEEEEEE--eCCCCCCCceEEEEEECCCEEEEECCCCCCC------cCCEEEeCCe--EEEEcCccc-----cCCCc
Confidence 3468999952 23 3568999999999999999998655432 3457888653 344443322 23457
Q ss_pred eeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 359 CIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 359 ~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
+.|.|... . ...++|.|+|+.++++|+.+|+.+.
T Consensus 75 ~~F~i~~~-----~-~r~~~l~a~s~~e~~~Wi~al~~~~ 108 (117)
T 2d9y_A 75 HTFKAEHA-----G-VRTYFFSAESPEEQEAWIQAMGEAA 108 (117)
T ss_dssp SEEEEECS-----S-SCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred cEEEEEcC-----C-CcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 89999522 1 3578999999999999999998764
No 37
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=98.37 E-value=3e-06 Score=77.70 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=71.4
Q ss_pred CcceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccce
Q psy3725 280 GTAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPC 359 (760)
Q Consensus 280 Gt~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~ 359 (760)
...++||+. +.++..+.|+++|++|.+..|++|....+. .+...|+|.+- ..|.... ..+-|+
T Consensus 17 ~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~------~~~g~i~L~~~-~~v~~~~--------~~~~~~ 79 (126)
T 1fao_A 17 LGTKEGYLT--KQGGLVKTWKTRWFTLHRNELKYFKDQMSP------EPIRILDLTEC-SAVQFDY--------SQERVN 79 (126)
T ss_dssp TTCEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCS------SCSEEEEGGGC-CEEEEEC--------SSSSSS
T ss_pred CccEEEEEE--EcCCCCCCcccEEEEEECCEEEEeCCCCCC------CceeEEEccce-EEEEecc--------cCCCCC
Confidence 346899995 345567899999999999999999865543 23457888543 2233221 234578
Q ss_pred eeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHH
Q psy3725 360 IFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRIL 401 (760)
Q Consensus 360 if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l 401 (760)
.|.|.+. ...++|.|+|+.++++|+.+|+.+...+
T Consensus 80 ~F~i~~~-------~r~~~l~a~s~~e~~~Wi~al~~~i~~~ 114 (126)
T 1fao_A 80 CFCLVFP-------FRTFYLCAKTGVEADEWIKILRWKLSQI 114 (126)
T ss_dssp EEEEEET-------TEEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEeC-------CcEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 9999642 3578999999999999999999887653
No 38
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.37 E-value=2.4e-06 Score=78.66 Aligned_cols=102 Identities=25% Similarity=0.382 Sum_probs=68.1
Q ss_pred cceeeeeecccccccccceEEEEEEEe--CcEEEEEecC-CCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCC-c
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVC--DFKLFLYDIS-PDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKK-D 356 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~--~~kL~~yd~~-~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~-d 356 (760)
..++||+. +.++..+.|+++|++|. +..|++|+.. .+. . +...|+|++ ..|..|.........+. .
T Consensus 18 ~~~~G~L~--K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~~~~~--~----~~g~i~L~~--~~v~~~~~~~~p~~~~~~~ 87 (129)
T 1x1g_A 18 VVKQGYLA--KQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEEN--R----PVGGFSLRG--SLVSALEDNGVPTGVKGNV 87 (129)
T ss_dssp EEEEEEEE--EECSSSSSEEEEEEEEEESSCEEEEECSSSCCS--S----CSCCEESTT--CCCEECCSSSSCSSCSSCC
T ss_pred EEEEEEEE--EECCCCCCeeeEEEEEeCCCCeEEEeCCCCcCC--c----cceEEECcC--CEEEEeCCCCCcccccCCC
Confidence 46899985 34556789999999999 4688999765 222 2 234678755 33444433222221111 1
Q ss_pred cceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 357 IPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 357 ip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
-|+.|.|.+. . +..++|.|+|+.++++|+.+|+.+.
T Consensus 88 ~~~~F~I~~~-----~-~r~~~l~a~s~~e~~~Wi~al~~~~ 123 (129)
T 1x1g_A 88 QGNLFKVITK-----D-DTHYYIQASSKAERAEWIEAIKKLT 123 (129)
T ss_dssp CSSCEEECCT-----T-CCCEEECCSSHHHHHHHHHHHHHHS
T ss_pred CCceEEEEcC-----C-CCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 4789999632 1 3468999999999999999998774
No 39
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=98.37 E-value=2e-07 Score=109.95 Aligned_cols=57 Identities=40% Similarity=0.842 Sum_probs=52.6
Q ss_pred CCCceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccCCCCCCCc
Q psy3725 208 SKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPP 264 (760)
Q Consensus 208 ~~~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~p~ 264 (760)
...|.|..+++..|++|++|++++||+.+||++|..|++++|.+|...+|..|+...
T Consensus 100 ~~~h~~~~~~~~~~~~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~v~~~C~~d~ 156 (674)
T 3pfq_A 100 RSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDH 156 (674)
T ss_dssp --CCCCCEECCSSCCCCSSSCSCCBBSSSCEECCSSSCCCBCSSTTSSSCCCSSSCS
T ss_pred cCCcceeecCCCCCCCCCccccccchhhcCccccccCCcchhhhhhhccCccccccc
Confidence 357999999999999999999999999999999999999999999999999997643
No 40
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=98.35 E-value=3.8e-06 Score=77.33 Aligned_cols=102 Identities=22% Similarity=0.329 Sum_probs=71.4
Q ss_pred CcceeeeeecccccccccceEEEEEEEeCc--EEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcc
Q psy3725 280 GTAYEGYVKVPKTGGVKKGWVRQFVVVCDF--KLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDI 357 (760)
Q Consensus 280 Gt~~eG~vkvp~~~~~kkgw~r~~~~l~~~--kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~di 357 (760)
....+||+. +.++..+.|+++|++|.+. .|++|+...+. .+...|+|.+ ..|..+.. .....+.+-
T Consensus 17 ~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~------~~~g~i~L~~--~~v~~~~~--~~~~~~~~~ 84 (129)
T 1x05_A 17 VIIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAE------DPLGAIHLRG--CVVTSVES--NSNGRKSEE 84 (129)
T ss_dssp EEEEEEEEE--ECCSSCCCCEEEEEEEEETTTEEEEECSSCCS------SCSEEEECTT--CEEEECCC--CCCSSSCSS
T ss_pred CceEEEEEE--ecCCCCCCCeeEEEEEeCCCCEEEEECCCCCC------cceeEEEccC--CEEEEccC--CccccccCC
Confidence 346899985 3455678899999999986 79999755432 2345788866 34444332 111223346
Q ss_pred ceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 358 PCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 358 p~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
|+.|.|.+. . +.+++|.|+|+.++++|+.+|+.+..
T Consensus 85 ~~~F~i~~~-----~-~~~~~l~a~s~~e~~~Wi~al~~~~~ 120 (129)
T 1x05_A 85 ENLFEIITA-----D-EVHYFLQAATPKERTEWIKAIQMASR 120 (129)
T ss_dssp CSEEEEECT-----T-CCCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred CeEEEEEcC-----C-CCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 899999643 1 24579999999999999999998865
No 41
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.34 E-value=4.5e-06 Score=75.10 Aligned_cols=104 Identities=17% Similarity=0.338 Sum_probs=71.5
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
..++||+. +.++..+.|+++|++|.+..|++|....+.. +...|+|.+ ..|..+... ....-++.
T Consensus 8 ~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~------~~g~i~L~~--~~v~~~~~~-----~~~~~~~~ 72 (118)
T 1v89_A 8 PIKMGWLK--KQRSIVKNWQQRYFVLRAQQLYYYKDEEDTK------PQGCMYLPG--CTIKEIATN-----PEEAGKFV 72 (118)
T ss_dssp EEEEEEEE--EECSSSSCEEEEEEEEETTEEEEESSSSCCS------CSEEECSTT--EEEEEECCC-----SSCCCCCE
T ss_pred CcEEEEEE--ecCCCCCCccEEEEEEECCEEEEEeCCCCCC------ceEEEECCC--CEEEEcCcC-----cccCCcce
Confidence 45799985 3455678899999999999999997665432 345688744 344433321 12344789
Q ss_pred eeeecccCCC-CCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 361 FRITTSLMDP-PGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 361 f~it~s~l~~-~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
|.|.+..-.. ......++|.|+|+.++++|+.+|..+..
T Consensus 73 f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~ 112 (118)
T 1v89_A 73 FEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG 112 (118)
T ss_dssp EEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHc
Confidence 9997531100 01235789999999999999999988754
No 42
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=98.34 E-value=2.9e-06 Score=77.41 Aligned_cols=101 Identities=22% Similarity=0.329 Sum_probs=71.5
Q ss_pred CcceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccce
Q psy3725 280 GTAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPC 359 (760)
Q Consensus 280 Gt~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~ 359 (760)
...++||+. +.++..++|+++|++|.+..|++|....+.. +...|+|.+ ...|..+...| ...-++
T Consensus 13 ~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~------~~g~i~l~~-~~~v~~~~~~~-----~~~~~~ 78 (125)
T 1eaz_A 13 AVIKAGYCV--KQGAVMKNWKRRYFQLDENTIGYFKSELEKE------PLRVIPLKE-VHKVQECKQSD-----IMMRDN 78 (125)
T ss_dssp CCSEEEEEE--EECTTTCCEEEEEEEECSSEEEEESSTTCSS------CSEEEEGGG-CCEEEECTTHH-----HHTCSS
T ss_pred CccEEEEEE--EeCCCCCCcceEEEEEeCCEEEEEcCCCCCc------ceeEEEccc-ceEEeeccccc-----cCCcCC
Confidence 356899985 4455678999999999999999997665432 345678744 23343322111 123478
Q ss_pred eeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHH
Q psy3725 360 IFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRIL 401 (760)
Q Consensus 360 if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l 401 (760)
.|.|.+. ...++|.|+|+.++++|+.+|+.+....
T Consensus 79 ~F~i~~~-------~r~~~l~a~s~~e~~~W~~al~~~i~~~ 113 (125)
T 1eaz_A 79 LFEIVTT-------SRTFYVQADSPEEMHSWIKAVSGAIVAQ 113 (125)
T ss_dssp EEEEECS-------SCEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeC-------CcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 9999632 3578999999999999999999887643
No 43
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=98.33 E-value=2.4e-06 Score=79.09 Aligned_cols=104 Identities=16% Similarity=0.273 Sum_probs=70.4
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCC---CCCCccceeEEeecCCCCeEEEeeccCcccccCCCcc
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDR---NALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDI 357 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~---~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~di 357 (760)
..++||+. +.++..+.|+++|+||.+.+|++|+...+. ....+..+...|||.. ..|..+.. ....-
T Consensus 12 ~~k~G~L~--K~g~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~--~~v~~~~~------~~~~k 81 (124)
T 2w2x_D 12 HKQQGELY--MWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNT--YNVVKAPQ------GKNQK 81 (124)
T ss_dssp -CCEEEEE--EEETTTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGG--EEEEECTT------CBTTB
T ss_pred cceeEEEE--EECCCCCCceEeEEEEECCEEEEEcccccccccccccCCccccEEECCC--CEEEEccC------CcCCC
Confidence 45799984 344566889999999999999999864321 1111223456788853 34444321 23345
Q ss_pred ceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 358 PCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 358 p~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
|++|.|...... ...++|.|+|..++++|+.+|.++.
T Consensus 82 ~~~F~I~~~~~~----~~~~~~~A~s~ee~~~Wi~ai~~a~ 118 (124)
T 2w2x_D 82 SFVFILEPKQQG----DPPVEFATDKVEELFEWFQSIREIT 118 (124)
T ss_dssp SEEEEEEECC------CCCEEEEECCCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCC----CceEEEEECCHHHHHHHHHHHHHHH
Confidence 789999654321 2468999999999999999998774
No 44
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=6.3e-06 Score=75.32 Aligned_cols=100 Identities=17% Similarity=0.240 Sum_probs=70.1
Q ss_pred cceeeeeecccccccccceEEEEEEEeCc--EEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccc
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDF--KLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIP 358 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~--kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip 358 (760)
..++||+.--...+..++|+++|++|.+. .|++|....+.. +...|+|.+-.. +.. ...-+
T Consensus 8 ~~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~~------~~g~I~L~~~~~-~~~----------~~~~~ 70 (119)
T 2dhk_A 8 KKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDAN------PLDSIDLSSAVF-DCK----------ADAEE 70 (119)
T ss_dssp CCCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCCS------CSEEEEGGGCEE-EEC----------TTGGG
T ss_pred CcEEEEEEecCCCCCCCCceeEEEEEECCccEEEEECCCCCcc------cccEEECCCCEE-Eec----------CCCCC
Confidence 35789985222113568999999999999 999998665432 345688854322 111 11236
Q ss_pred eeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHhhc
Q psy3725 359 CIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILKRN 404 (760)
Q Consensus 359 ~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~~~ 404 (760)
+.|.|.+. ...++|.|+|+.++++|+.+|+.+......+
T Consensus 71 ~~F~i~~~-------~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~ 109 (119)
T 2dhk_A 71 GIFEIKTP-------SRVITLKAATKQAMLYWLQQLQMKRWEFHNS 109 (119)
T ss_dssp CEEEEECS-------SCCEEEECSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred CEEEEEeC-------CcEEEEECCCHHHHHHHHHHHHHHHHHhcCC
Confidence 79999632 3568999999999999999999987766544
No 45
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=98.31 E-value=1.1e-06 Score=77.95 Aligned_cols=99 Identities=18% Similarity=0.369 Sum_probs=62.6
Q ss_pred eeeeeeccc----cc--ccccceEEEEEEEeCcEEEEEecCCCCC-CCCccceeEEeecCCCCeEEEeeccCcccccCCC
Q psy3725 283 YEGYVKVPK----TG--GVKKGWVRQFVVVCDFKLFLYDISPDRN-ALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKK 355 (760)
Q Consensus 283 ~eG~vkvp~----~~--~~kkgw~r~~~~l~~~kL~~yd~~~~~~-~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~ 355 (760)
|+||+.--. .+ +..++|++.|++|.+..|++|....+.. ..+ ..+...|++..-...+ .. ...
T Consensus 1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~-~~~~~~i~l~~~~~~~---~~------~~~ 70 (106)
T 1btn_A 1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIP-YHSEVPVSLKEAICEV---AL------DYK 70 (106)
T ss_dssp CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCC-SSSCCCEECTTCEEEE---CS------SCC
T ss_pred CccEEEEEEEEeCCCccCCCCChhEEEEEEECCEEEEEeCCcccccCCC-CCCcceEECCCCEEEE---cc------ccc
Confidence 578874222 11 3468999999999999999996544211 010 0123346664422211 11 122
Q ss_pred ccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 356 DIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 356 dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
.-|+.|.|.+. .+.+++|.|+|+.++.+|+.+|..+
T Consensus 71 ~~~~~F~i~~~------~~~~~~~~A~s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 71 KKKHVFKLRLS------DGNEYLFQAKDDEEMNTWIQAISSA 106 (106)
T ss_dssp SSSSEEEEECT------TSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred CCccEEEEEec------CCCEEEEECCCHHHHHHHHHHHhcC
Confidence 34789999632 1357899999999999999999753
No 46
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=98.30 E-value=3.1e-06 Score=78.41 Aligned_cols=114 Identities=11% Similarity=0.166 Sum_probs=73.1
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
..++||+..-..++..+.|+++|++|.+..|++|...++... ..+...|+|.+- .+..|...+ .....-|+.
T Consensus 5 v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk~~~d~~~---~~p~g~I~L~~~--~~~~v~~~~---~~~~~~~~~ 76 (134)
T 2y7b_A 5 VEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKR---KNPIGRINLANC--TSRQIEPAN---REFCARRNT 76 (134)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEESSHHHHTT---SCCSEEEEGGGB--CSSSCEECC---TTTCCCTTE
T ss_pred ceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEECCCCcccc---cCceEEEEhhhC--ccccccccc---hhhccCCCE
Confidence 357899965433456689999999999999999975433111 123557888552 211122111 011234789
Q ss_pred eeeecccCCCCCC-------------cceEEEeeCCHHHHHHHHHHHHHHHHHHh
Q psy3725 361 FRITTSLMDPPGT-------------KNHTLMLADSDTEKTKWVVALSELHRILK 402 (760)
Q Consensus 361 f~it~s~l~~~~~-------------~~~l~LlA~S~~ek~kWv~~L~~~~~~l~ 402 (760)
|.|.+.....+.. ...++|.|+|+.++++|+.+|..+...++
T Consensus 77 F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~~~~ 131 (134)
T 2y7b_A 77 FELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVDIR 131 (134)
T ss_dssp EEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHh
Confidence 9997532211100 13689999999999999999999887665
No 47
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.29 E-value=5.7e-06 Score=77.52 Aligned_cols=100 Identities=17% Similarity=0.292 Sum_probs=66.9
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
..++||+.- .+ ..++|+++|+||.+..|++|....+.. +...|+|.+ ++|.. ...+.-++.
T Consensus 8 v~k~GwL~K--~g-~~k~WkrRWfVLk~~~L~yyk~~~~~~------p~G~I~L~~--~~v~~--------~~~~~~~~~ 68 (130)
T 1v88_A 8 IVMADWLKI--RG-TLKSWTKLWCVLKPGVLLIYKTQKNGQ------WVGTVLLNA--CEIIE--------RPSKKDGFC 68 (130)
T ss_dssp CCEEEEEEE--CC-SSSSCEEEEEEEETTEEEEESCSSSCC------CCEEEECSS--CEECC--------CCTTTSSCE
T ss_pred eEEEeEEEE--eC-CCCCceEEEEEEECCEEEEECCCCCCC------ceEEEEcCC--CEEEE--------CCCCCCCeE
Confidence 458999964 33 667999999999999999998766432 345677754 33311 111223689
Q ss_pred eeeecccC-------CC----------CCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 361 FRITTSLM-------DP----------PGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 361 f~it~s~l-------~~----------~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
|.|.+..- ++ |-+...++|.|+|+.++++|+.+|+.+.+
T Consensus 69 F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~ 124 (130)
T 1v88_A 69 FKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALK 124 (130)
T ss_dssp EEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 99964211 00 00122378999999999999999987754
No 48
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=98.28 E-value=7.6e-06 Score=72.27 Aligned_cols=101 Identities=16% Similarity=0.247 Sum_probs=68.9
Q ss_pred ceeeeeeccccc-c-cccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccce
Q psy3725 282 AYEGYVKVPKTG-G-VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPC 359 (760)
Q Consensus 282 ~~eG~vkvp~~~-~-~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~ 359 (760)
..+||+..-... + ..++|+++|++|.+..|++|....+.. +...|+|.+-. |..+... .....-|+
T Consensus 4 ~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~------~~g~i~L~~~~--v~~~~~~----~~~~~~~~ 71 (108)
T 1u5d_A 4 IKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQ------PKGTFLIKGYS--VRMAPHL----RRDSKKES 71 (108)
T ss_dssp EEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSS------CSEEEECTTCE--EEECGGG----CSSGGGGG
T ss_pred cEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCCCCC------CCEEEEecceE--EEeCCcc----ccccCCcc
Confidence 578998543222 2 238999999999999999998655432 34568885533 3222210 01224578
Q ss_pred eeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHH
Q psy3725 360 IFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRI 400 (760)
Q Consensus 360 if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~ 400 (760)
.|.|.+. . +.+++|.|+|+.++++|+.+|+.+..-
T Consensus 72 ~F~i~~~-----~-~r~~~l~a~s~~e~~~Wi~ai~~~i~~ 106 (108)
T 1u5d_A 72 CFELTSQ-----D-RRTYEFTATSPAEARDWVDQISFLLKD 106 (108)
T ss_dssp EEEEECS-----S-SCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcC-----C-CcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 9999632 1 256899999999999999999988654
No 49
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=98.26 E-value=7.8e-06 Score=74.22 Aligned_cols=97 Identities=28% Similarity=0.407 Sum_probs=66.4
Q ss_pred eeeeeecccccc---cccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccce
Q psy3725 283 YEGYVKVPKTGG---VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPC 359 (760)
Q Consensus 283 ~eG~vkvp~~~~---~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~ 359 (760)
++||+.- +.++ ..+.|++.|++|.+..|++|....+.. +...|||...... .+.. .....-|.
T Consensus 2 keG~L~k-K~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~~~------p~~~i~l~~~~~~--~~~~-----~~~~~r~~ 67 (112)
T 3cxb_B 2 KEGMLHY-KAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVI------PLLSVNMGGEQCG--GCRR-----ANTTDRPH 67 (112)
T ss_dssp EEEEEEE-CCSCCCSSCCCCEEEEEEEETTEEEEESSSSCCS------CSEEEETTC-CEE--EEEE-----CCCSSCTT
T ss_pred ceEEEEE-eCCCCCCCCCCceEEEEEEECCEEEEECCCCCCC------ccceEEecCCEEE--eeec-----cCCCCCCe
Confidence 6899842 2233 568999999999999999997654432 2446787543222 1111 12334578
Q ss_pred eeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 360 IFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 360 if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
.|+|.+.. +.+++|.|+|+.+.++|+.+|..+..
T Consensus 68 ~F~l~~~~------~~~y~f~A~s~ee~~~Wi~ai~~~~~ 101 (112)
T 3cxb_B 68 AFQVILSD------RPCLELSAESEAEMAEWMQHLCQAVS 101 (112)
T ss_dssp EEEEEETT------SCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEEEcCC------CCEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 99996432 24689999999999999999987654
No 50
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1.5e-05 Score=72.22 Aligned_cols=99 Identities=16% Similarity=0.255 Sum_probs=68.1
Q ss_pred CCcceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccc
Q psy3725 279 IGTAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIP 358 (760)
Q Consensus 279 ~Gt~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip 358 (760)
.+...+||+.--. .+..+.|+++|++|.+..|++|....+. | ...+++.+.. |..+ .+-+
T Consensus 8 ~~~~~~G~L~K~~-~~~~k~WkkR~fvL~~~~L~yyk~~~~~---~----~~~i~l~~~~--v~~~----------~~~~ 67 (114)
T 2da0_A 8 YGSEKKGYLLKKS-DGIRKVWQRRKCSVKNGILTISHATSNR---Q----PAKLNLLTCQ--VKPN----------AEDK 67 (114)
T ss_dssp CCSCEEEEEEEEC-SSSCCCEEEEEEEEETTEEEECCSSCCS---C----CEEEETTTSE--EEEC----------SSSS
T ss_pred CCccEEEEEEEeC-CCCCCCceeEEEEEeCCEEEEEcCCCCC---C----CCEEEeeeeE--EEEC----------CCCC
Confidence 3557899985322 2245899999999999999999864432 1 1234543332 3211 1235
Q ss_pred eeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHhhc
Q psy3725 359 CIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILKRN 404 (760)
Q Consensus 359 ~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~~~ 404 (760)
+.|.|.+ + ..+++|.|+|+.++++|+.+|..+......+
T Consensus 68 ~~F~I~~-----~--~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~ 106 (114)
T 2da0_A 68 KSFDLIS-----H--NRTYHFQAEDEQDYVAWISVLTNSKEEALTM 106 (114)
T ss_dssp SCEEEEE-----T--TEEEEEECSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEc-----C--CcEEEEEcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 7899962 2 3689999999999999999999888765444
No 51
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=5.8e-06 Score=75.48 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=69.0
Q ss_pred ceeeeeecccccccccceEEEEEEEe--CcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccce
Q psy3725 282 AYEGYVKVPKTGGVKKGWVRQFVVVC--DFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPC 359 (760)
Q Consensus 282 ~~eG~vkvp~~~~~kkgw~r~~~~l~--~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~ 359 (760)
.++||+. |.++..++|+++|++|. +..|.+|....+.... +...|+|.+-. |.. . .+-++
T Consensus 9 ~~~G~L~--K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~~----~~g~I~L~~~~--v~~---~-------~~~~~ 70 (120)
T 2d9x_A 9 NVYGYLM--KYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQK----PRGTLQLAGAV--ISP---S-------DEDSH 70 (120)
T ss_dssp CCEEEEE--EEEETTTEEEEEEEEECTTTCEEEEESSGGGSSSC----CSEEEECTTCC--EEC---C-------SSSSS
T ss_pred cEEEEEE--ecCCCCCCceEEEEEEECCCCEEEEEecCcccCCC----ccceEEcceEE--EEe---c-------CCCCC
Confidence 5789984 44456789999999998 4689999766543222 34568886632 221 1 12368
Q ss_pred eeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHh
Q psy3725 360 IFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILK 402 (760)
Q Consensus 360 if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~ 402 (760)
.|.|.+. . +..++|.|+|+.++++|+.+|+.+.....
T Consensus 71 ~F~i~~~-----~-~r~~~l~a~s~~e~~~Wi~al~~~~~~~~ 107 (120)
T 2d9x_A 71 TFTVNAA-----S-GEQYKLRATDAKERQHWVSRLQICTQHHT 107 (120)
T ss_dssp CEEECCS-----S-SCCEEECCSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcC-----C-CCEEEEECCCHHHHHHHHHHHHHHHHHhh
Confidence 8999632 1 25789999999999999999998877654
No 52
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=98.25 E-value=4.1e-06 Score=81.13 Aligned_cols=101 Identities=20% Similarity=0.403 Sum_probs=61.1
Q ss_pred cceeeeeecc--------cccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCccccc
Q psy3725 281 TAYEGYVKVP--------KTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHA 352 (760)
Q Consensus 281 t~~eG~vkvp--------~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a 352 (760)
..++||+..- +.++..++|++.|+||.+..|++|....+....| ...|+|......+ .+. .
T Consensus 3 v~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~----~g~i~l~~~~~~~-~~~------~ 71 (168)
T 2j59_M 3 AAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPS----EEEQPISVNACLI-DIS------Y 71 (168)
T ss_dssp CCEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC------------CEECSSCEE-EEC------S
T ss_pred CcEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEEEECCccccccc----CCceEecccceEE-Eec------c
Confidence 4689999632 4445668899999999999999997665422222 2234442222112 121 1
Q ss_pred CCCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 353 TKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 353 ~~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
....-|+.|.|.+. . .+++|.|+|+.++++|+.+|..+..
T Consensus 72 ~~~~~~~~F~I~t~-----~--r~~~l~A~s~~e~~~Wi~ai~~~~~ 111 (168)
T 2j59_M 72 SETKRKNVFRLTTS-----D--CECLFQAEDRDDMLAWIKTIQESSN 111 (168)
T ss_dssp SSCSCSSEEEEECS-----S--CEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCEEEEEeC-----C--ceEEEEcCCHHHHHHHHHHHHHHHh
Confidence 22345789999743 2 4799999999999999999987754
No 53
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=98.23 E-value=1.2e-05 Score=74.25 Aligned_cols=110 Identities=12% Similarity=0.184 Sum_probs=71.1
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCC-CCCCccceeEEeecCCCCeEEEeeccCcccccCC-Cccc
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDR-NALPAVYVSLVLDMRDEDFAVSGVRESDVIHATK-KDIP 358 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~-~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~-~dip 358 (760)
...+||+. +.++..++|++.|+||.+..|++|-.++.+ ... |...|.|. ...|..+...|..+..+ ...+
T Consensus 6 ~~k~G~L~--Kk~~~~k~W~~rwfVL~~~~L~yyK~~~~~~d~~----P~gsI~L~--~c~v~~~~~~~~~~~~~~~~~~ 77 (120)
T 4a6h_A 6 EIKSGFLE--RRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLV----PVMSLALS--ECTVTEHSRKNSTSSPNSTGSD 77 (120)
T ss_dssp CSEEEEEE--EEETTTTEEEEEEEEECSSEEEEESSCCTTTCCS----CSEEEEGG--GEEEEEECCCCC---------C
T ss_pred ccEEEEEE--EcCCCCCCCccEEEEEeCCEEEEEcCCCcCcCCC----ceEEEECC--CCEEEEcccccccccccccCCC
Confidence 35789984 445567899999999999999999654432 222 34567773 57776665443211111 1145
Q ss_pred eeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 359 CIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 359 ~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
+.|.|...+-+--....+++|.|+|..|+++|+.+|..+.
T Consensus 78 ~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 78 AKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp CEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred cEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence 6777765442110113589999999999999999998774
No 54
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.22 E-value=7.8e-06 Score=76.12 Aligned_cols=98 Identities=17% Similarity=0.357 Sum_probs=68.6
Q ss_pred Ccceeeeeecccccc-cccceEEEEEEEeCcEEEEEe----cCCCCCCCCccceeEEeecCCCCeEEEeecc-CcccccC
Q psy3725 280 GTAYEGYVKVPKTGG-VKKGWVRQFVVVCDFKLFLYD----ISPDRNALPAVYVSLVLDMRDEDFAVSGVRE-SDVIHAT 353 (760)
Q Consensus 280 Gt~~eG~vkvp~~~~-~kkgw~r~~~~l~~~kL~~yd----~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~-sdvi~a~ 353 (760)
+...+||+ .+.++ ..+.|+|+|+||.+..|++|. ...+. .|.-.|+|.. ++|..+.+ +|.+
T Consensus 7 n~~~~G~L--~KqG~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~~~------~p~G~I~L~g--~tV~~~~~~~~~~--- 73 (126)
T 1wi1_A 7 GMKHSGYL--WAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKA------EPQELLQLDG--YTVDYTDPQPGLE--- 73 (126)
T ss_dssp CEEEEEEE--EEECSSSCCSCEEEEEEEEEEETTEEEEEECCSSSS------CCSEEEECSS--CEEEECCCCSSCC---
T ss_pred CCceeEEE--EEeCCCcccccceEEEEEeCCEEEEEEcccccccCC------CCceEEECCC--cEEEEecCCcccc---
Confidence 34688998 34444 448999999999999999997 33322 2344677744 67765432 3332
Q ss_pred CCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 354 KKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 354 ~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
.-++.|++. .++ .+++|.|+|+.|+..|+.+|..+..
T Consensus 74 --~~k~~F~~v-----~~~--~ty~~~Adseee~~~WikAi~~A~~ 110 (126)
T 1wi1_A 74 --GGRAFFNAV-----KEG--DTVIFASDDEQDRILWVQAMYRATG 110 (126)
T ss_dssp --SCSSEEEEE-----CSS--CEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred --cCceEEEEe-----cCC--ceEEEEcCCHHHHHHHHHHHHHHhc
Confidence 235899974 234 3589999999999999999987654
No 55
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.22 E-value=7.9e-06 Score=78.44 Aligned_cols=96 Identities=13% Similarity=0.172 Sum_probs=68.1
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
...+||+. |.++..+.|+++|++|.+..|++|....+.. +...|+|.+- ++..+..+ ...-++.
T Consensus 18 v~keG~L~--Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~d~~------~~g~I~L~~~--~~~~~~~~------~~~~~~~ 81 (149)
T 1x1f_A 18 LYFEGFLL--IKRSGYREYEHYWTELRGTTLFFYTDKKSII------YVDKLDIVDL--TCLTEQNS------TEKNCAK 81 (149)
T ss_dssp EEEEEEEE--EECTTCCSCEEEEEEEETTEEEEESCSSCSS------CSEECCCSSC--CEEEECCC------TTSCCCE
T ss_pred ccEEEEEE--EeCCCCCCceeEEEEEcCCEEEEEeCCCccc------cCcEEECCCc--eEEeeccC------CCCcCcE
Confidence 56799994 4555668999999999999999998665443 2346888553 22111111 1223688
Q ss_pred eeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 361 FRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
|.|.+ |. .+++|.|+|..+++.|+.+|..+..
T Consensus 82 F~I~t-----~~--r~~~f~A~s~ee~~eWi~aI~~v~~ 113 (149)
T 1x1f_A 82 FTLVL-----PK--EEVQLKTENTESGEEWRGFILTVTE 113 (149)
T ss_dssp EEEEC-----SS--CCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEc-----CC--CEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 99963 22 4679999999999999999987765
No 56
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.21 E-value=7.9e-06 Score=73.05 Aligned_cols=93 Identities=22% Similarity=0.266 Sum_probs=65.4
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
...+||+..- ..++|+++|++|.+..|++|....+ . + .+...|++.. ..|..+. ...-|+.
T Consensus 8 ~~~~G~L~K~----~~k~Wk~RwfvL~~~~L~yyk~~~~-~--~--~~~~~i~l~~--~~v~~~~--------~~~~~~~ 68 (107)
T 2cof_A 8 LETSSYLNVL----VNSQWKSRWCSVRDNHLHFYQDRNR-S--K--VAQQPLSLVG--CEVVPDP--------SPDHLYS 68 (107)
T ss_dssp CTTCCEEEEE----ETTEEEEEEEEECSSCEEEECSSTT-C--S--EEEEEECTTT--CEEECCC--------BTTBSCE
T ss_pred CcEeEEEEEe----cCCCcceEEEEEECCEEEEEeCCcc-c--C--CCeeEEeccc--eEEEECC--------CCCCCeE
Confidence 3578998543 5689999999999999999976544 1 1 2344455532 3343221 1356799
Q ss_pred eeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 361 FRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
|.|.+. + ..+++|.|+|+.++++|+.+|..+.
T Consensus 69 F~i~~~-----~-~r~~~l~A~s~~e~~~Wi~al~~~~ 100 (107)
T 2cof_A 69 FRILHK-----G-EELAKLEAKSSEEMGHWLGLLLSES 100 (107)
T ss_dssp EEEEET-----T-EEEEEEECSSHHHHHHHHHHHHHHS
T ss_pred EEEEeC-----C-CeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 999642 2 3578999999999999999998763
No 57
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=98.19 E-value=1.1e-05 Score=78.90 Aligned_cols=108 Identities=12% Similarity=0.177 Sum_probs=68.6
Q ss_pred ceeeeeecccccc---cccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCC----
Q psy3725 282 AYEGYVKVPKTGG---VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATK---- 354 (760)
Q Consensus 282 ~~eG~vkvp~~~~---~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~---- 354 (760)
..+||+.--..++ ..++|+++|+||.+..|.+|+...++. ....+.-.|+|.+ ...|..|...|-....+
T Consensus 4 ikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~--~~~~~~G~I~L~~-~~~ve~~~~~~~~~~~~~~~~ 80 (169)
T 1btk_A 4 ILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERG--RRGSKKGSIDVEK-ITCVETVVPEKNPPPERQIPR 80 (169)
T ss_dssp CEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTT--EEEEEEEEEEGGG-EEEEEECCCCSSCCGGGCC--
T ss_pred EEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccC--CCCceeeEEECcc-eEEEEeccCCCCcchhccccc
Confidence 4689984221121 247899999999999999998742211 1123566888844 33455553211100000
Q ss_pred --------------CccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 355 --------------KDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 355 --------------~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
...|+.|.|.+. . .+++|.|+|+.|+++|+.+|..+..
T Consensus 81 ~~~~~~~~~~~~i~~~~~~~F~I~t~-----~--rt~yl~A~s~~E~~eWi~aI~~~i~ 132 (169)
T 1btk_A 81 RGEESSEMEQISIIERFPYPFQVVYD-----E--GPLYVFSPTEELRKRWIHQLKNVIR 132 (169)
T ss_dssp -------CCTTHHHHCCCEEEEEEET-----T--CCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred ccCcccccccccccccccccEEEEeC-----C--ceEEEEcCCHHHHHHHHHHHHHHHH
Confidence 012489999642 2 4689999999999999999987754
No 58
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.18 E-value=1.2e-05 Score=74.85 Aligned_cols=101 Identities=16% Similarity=0.228 Sum_probs=64.8
Q ss_pred ceeeeeeccccc-ccccceEEEEEEEe---CcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcc
Q psy3725 282 AYEGYVKVPKTG-GVKKGWVRQFVVVC---DFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDI 357 (760)
Q Consensus 282 ~~eG~vkvp~~~-~~kkgw~r~~~~l~---~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~di 357 (760)
.++||+. |.+ +..+.|+|+|++|+ +..|++|+.+.+. .....+...|+|. ....|..+.+.+ +.+-
T Consensus 16 ~~~G~L~--K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~--~~~~~~~G~I~L~-~~~~V~~~~~~~-----~~~~ 85 (126)
T 1v5p_A 16 RICGFLD--IEDNENSGKFLRRYFILDTQANCLLWYMDNPQNL--AVGAGAVGSLQLT-YISKVSIATPKQ-----KPKT 85 (126)
T ss_dssp CEECCEE--EECTTCSSCEEEEEEEEETTTTEEEEESSCTTTS--CTTCCCSEEEETT-TCCEEEECCTTT-----SCSC
T ss_pred ceEEEEE--EeCCCCCCCccceEEEEecCCCCEEEEECCCCCC--CCCceeeEEEECC-CccEEecCCccc-----CCCC
Confidence 4689984 333 34689999999999 5566666653210 0011245578873 344555443222 1234
Q ss_pred ceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 358 PCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 358 p~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
++.|.|.+ | ..+++|.|+|+.+++.|+.+|..+..
T Consensus 86 ~~~F~i~t-----~--~r~y~l~A~s~~e~~~Wi~al~~a~~ 120 (126)
T 1v5p_A 86 PFCFVINA-----L--SQRYFLQANDQKDLKDWVEALNQASK 120 (126)
T ss_dssp SSEEEEEC-----S--SCEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred CEEEEEEC-----C--CEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 57887731 2 35799999999999999999987643
No 59
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.08 E-value=2.9e-05 Score=70.89 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=66.5
Q ss_pred cceeeeeecccccccccceEEEEEEEeCc---EEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcc
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDF---KLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDI 357 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~---kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~di 357 (760)
..+.||+..- .. .+.|++.|+||.++ -|++|....+..+ ...|.|. .++|..+.+ ..+.+-
T Consensus 8 ~~~~G~L~k~--~~-~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p------~g~I~L~--g~~V~~~~~-----~~~~~~ 71 (112)
T 2coc_A 8 SLLCGPLRLS--ES-GETWSEVWAAIPMSDPQVLHLQGGSQDGRL------PRTIPLP--SCKLSVPDP-----EERLDS 71 (112)
T ss_dssp SSSEEEEEEE--SS-SSCEEEEEEECCTTCTTCEEEECCTTCSSS------CSEECGG--GCEEECCCS-----SSCCSS
T ss_pred ceEEEEEEec--CC-CCCceEEEEEEECCCccEEEEECCCCccCc------ceEEEcC--CCEEEecCc-----ccccCC
Confidence 4567998652 22 68899999999985 4777876655432 2356663 356654332 223456
Q ss_pred ceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 358 PCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 358 p~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
++.|+|... +.+++|.|+|+.+.++|+++|..+.
T Consensus 72 ~~~Fki~~~-------~~~y~f~A~s~e~~~~Wl~al~~A~ 105 (112)
T 2coc_A 72 GHVWKLQWA-------KQSWYLSASSAELQQQWLETLSTAA 105 (112)
T ss_dssp SEEEEEEET-------TEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCEEEEecC-------CeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 899999622 3579999999999999999998874
No 60
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.07 E-value=2.3e-05 Score=74.20 Aligned_cols=99 Identities=16% Similarity=0.219 Sum_probs=68.6
Q ss_pred Ccceeeeeeccccc----ccccceEEEEEEEeCc-----EEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCccc
Q psy3725 280 GTAYEGYVKVPKTG----GVKKGWVRQFVVVCDF-----KLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVI 350 (760)
Q Consensus 280 Gt~~eG~vkvp~~~----~~kkgw~r~~~~l~~~-----kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi 350 (760)
...++||+..-... +..++|+++|++|.+. .|++|...... . .+..+|+|.+- .+..+
T Consensus 17 ~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~-~----~~~g~I~L~~~--~~~~~------ 83 (150)
T 1wg7_A 17 GITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKIS-K----EPKGSIFLDSC--MGVVQ------ 83 (150)
T ss_dssp CCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCS-S----CCSEEECTTTC--CEECC------
T ss_pred CeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCC-C----CcCcEEecccC--EEEec------
Confidence 35689999543322 3457999999999997 89999765411 1 23457888652 22111
Q ss_pred ccCCCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 351 HATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 351 ~a~~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
....-|+.|.|.+. . +..++|.|+|..++.+|+.+|..+..
T Consensus 84 --~~~~~~~~F~i~~~-----~-~r~~~l~A~s~~e~~~Wi~al~~ai~ 124 (150)
T 1wg7_A 84 --NNKVRRFAFELKMQ-----D-KSSYLLAADSEVEMEEWITILNKILQ 124 (150)
T ss_dssp --CCSSCTTEEEEECS-----S-SCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred --CCCCCceEEEEEeC-----C-CcEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 12355789999643 1 25789999999999999999998765
No 61
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=98.07 E-value=2.8e-05 Score=73.58 Aligned_cols=105 Identities=15% Similarity=0.265 Sum_probs=69.1
Q ss_pred cceeeeeeccc-ccc-cccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccc
Q psy3725 281 TAYEGYVKVPK-TGG-VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIP 358 (760)
Q Consensus 281 t~~eG~vkvp~-~~~-~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip 358 (760)
..++||+.--. ..+ ..++|+++|++|.+..|++|....+.. +...|+|.+- +|..+.. .. ....-|
T Consensus 17 ~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~------~~g~i~L~~~--~v~~~~~--~~--~~~~~~ 84 (148)
T 1u5f_A 17 VIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ------QKGEFAIDGY--DVRMNNT--LR--KDGKKD 84 (148)
T ss_dssp EEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSS------CSEEEECTTC--EEEECTT--SC--SSTTGG
T ss_pred ccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCCCcc------cceEEEcCCc--EEEECCC--cc--cCCCCc
Confidence 46899985322 112 347999999999999999997655432 3456787543 3433221 11 122346
Q ss_pred eeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHhh
Q psy3725 359 CIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILKR 403 (760)
Q Consensus 359 ~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~~ 403 (760)
+.|.|.+. . +.+++|.|+|..++++|+.+|+.+...+..
T Consensus 85 ~~F~I~~~-----~-~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~ 123 (148)
T 1u5f_A 85 CCFEICAP-----D-KRIYQFTAASPKDAEEWVQQLKFILQDLGS 123 (148)
T ss_dssp GEEEEECT-----T-SCEEEEECSSHHHHHHHHHHHHHHCC----
T ss_pred cEEEEECC-----C-CcEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence 89999642 2 357899999999999999999988765554
No 62
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.04 E-value=1.5e-05 Score=73.01 Aligned_cols=105 Identities=14% Similarity=0.174 Sum_probs=65.8
Q ss_pred cceeeeeecccc---cc---cccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCC
Q psy3725 281 TAYEGYVKVPKT---GG---VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATK 354 (760)
Q Consensus 281 t~~eG~vkvp~~---~~---~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~ 354 (760)
..++||+.--.. +| ..++|++.|++|.+..|++|....+....-.......|+|..- .+... .| .
T Consensus 8 v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~--~~~~~--~~-----~ 78 (123)
T 1wjm_A 8 EQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARA--QGSVA--FD-----Y 78 (123)
T ss_dssp CCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTC--EEEEC--TT-----C
T ss_pred eEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEccCc--EEeec--cc-----c
Confidence 357899843211 11 1579999999999999999965443211000012234555332 12111 11 2
Q ss_pred CccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHH
Q psy3725 355 KDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRI 400 (760)
Q Consensus 355 ~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~ 400 (760)
..-|++|+|++.. +.+++|-|+|+.++++|+.+|+.+...
T Consensus 79 ~~r~~~F~i~~~~------~~~~~f~A~s~~e~~~Wi~ai~~~~~~ 118 (123)
T 1wjm_A 79 RKRKHVFKLGLQD------GKEYLFQAKDEAEMSSWLRVVNAAIAS 118 (123)
T ss_dssp SSCSSEEEEECSS------SCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEEcC------CcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 3457999996431 257899999999999999999987653
No 63
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=98.02 E-value=1.4e-05 Score=73.20 Aligned_cols=105 Identities=19% Similarity=0.333 Sum_probs=66.8
Q ss_pred cceeeeeecccccccccceEEEEEEEeC-cEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccce
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCD-FKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPC 359 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~-~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~ 359 (760)
...+||+. +.++..++|+++|++|.+ ..|++|....+..+ ...|+|.. ..+..+ .+. .....-|+
T Consensus 8 ~~~~G~L~--K~g~~~k~WkkRwfvL~~~~~L~yy~~~~~~~~------~g~i~L~~--~~~~~~---~~~-~~~~~~~~ 73 (125)
T 1unq_A 8 IVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVD------QREAPLNN--FSVAQC---QLM-KTERPRPN 73 (125)
T ss_dssp EEEEEEEE--EECSSSCCEEEEEEEEETTSEEEEESSCCCSHH------HHTSCSEE--EECTTC---EEE-EECSSSTT
T ss_pred eeEEeeEE--eccCCccCccCcEEEEecCCEEEEEeCCCCCCC------CceeEccc--eeEEee---eec-ccccCCCC
Confidence 46899995 455667899999999995 58999976554321 11233311 111000 000 01123468
Q ss_pred eeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHh
Q psy3725 360 IFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILK 402 (760)
Q Consensus 360 if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~ 402 (760)
.|.|...+- ....+++|.|+|..++.+|+.+|+.+...++
T Consensus 74 ~F~I~~~~~---~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~ 113 (125)
T 1unq_A 74 TFIIRCLQW---TTVIERTFHVETPEEREEWTTAIQTVADGLK 113 (125)
T ss_dssp EEEEEEEET---TEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCC---CCceeEEEEeCCHHHHHHHHHHHHHHHhhcc
Confidence 999964221 1235789999999999999999998887654
No 64
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=97.96 E-value=9.1e-05 Score=69.07 Aligned_cols=103 Identities=18% Similarity=0.247 Sum_probs=69.2
Q ss_pred ceeeeeec---ccccc--cccceEEEEEEEeCcEEEEEecCCCCC-CCC--ccceeEEeecCCCCeEEEeeccCcccccC
Q psy3725 282 AYEGYVKV---PKTGG--VKKGWVRQFVVVCDFKLFLYDISPDRN-ALP--AVYVSLVLDMRDEDFAVSGVRESDVIHAT 353 (760)
Q Consensus 282 ~~eG~vkv---p~~~~--~kkgw~r~~~~l~~~kL~~yd~~~~~~-~~p--~~~~~~~ldl~d~~fsV~~V~~sdvi~a~ 353 (760)
.++|.++- -+.|+ ..+.|+|.|++|+|+.|++|+...-+. ..+ .-.|..+++|. .+.|..+.
T Consensus 2 ~~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~--g~~V~~~e-------- 71 (126)
T 2dtc_A 2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIV--GWMVQLPD-------- 71 (126)
T ss_dssp CEEEEEEEEEEEBTTBCCSSCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECT--TCEEECCC--------
T ss_pred ceeeeeeeeehhhcCCcccccCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEeC--CCEEEecC--------
Confidence 46788753 24333 257899999999999999999653111 000 11356678873 35554222
Q ss_pred CCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 354 KKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 354 ~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
...-|.+|.|+..+. +..++|-|+|..+...|+.+|..+..
T Consensus 72 ~~~~~~~F~L~~~~~-----G~~Y~fqA~s~~~~~~W~~ai~~a~~ 112 (126)
T 2dtc_A 72 DPEHPDIFQLNNPDK-----GNVYKFQTGSRFHAILWHKHLDDACK 112 (126)
T ss_dssp CTTSTTEEEEECTTS-----CSEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeeCCC-----CCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 112479999974322 36789999999999999999988754
No 65
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=97.90 E-value=0.00012 Score=68.14 Aligned_cols=107 Identities=21% Similarity=0.338 Sum_probs=68.3
Q ss_pred cceeeeeecc--cccc--cccceEEEEEEEeCcEEEEEecCCCCCC-C----CccceeEEeecCCCCeEEEeeccCcccc
Q psy3725 281 TAYEGYVKVP--KTGG--VKKGWVRQFVVVCDFKLFLYDISPDRNA-L----PAVYVSLVLDMRDEDFAVSGVRESDVIH 351 (760)
Q Consensus 281 t~~eG~vkvp--~~~~--~kkgw~r~~~~l~~~kL~~yd~~~~~~~-~----p~~~~~~~ldl~d~~fsV~~V~~sdvi~ 351 (760)
...+||+.-- ..+| ..+.|++.|++|.+..|++|........ . ....+...|+|++- +|... .|
T Consensus 12 ~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~--~v~~~--~~--- 84 (129)
T 2p0d_A 12 VEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGA--ALAHG--RH--- 84 (129)
T ss_dssp EEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESCC--------------CCSEEEECTTC--EEEEC--TT---
T ss_pred eeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCc--EEEEC--CC---
Confidence 3578998531 0123 2489999999999999999965421100 0 11235667888643 33221 11
Q ss_pred cCCCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHh
Q psy3725 352 ATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILK 402 (760)
Q Consensus 352 a~~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~ 402 (760)
...-+++|.|++. .+..++|.|+|+.+++.|+.+|..+...+.
T Consensus 85 --~~kr~~~F~l~t~------~~~~yl~qA~s~~e~~~Wi~aI~~~i~~~~ 127 (129)
T 2p0d_A 85 --LSSRRNVLHIRTI------PGHEFLLQSDHETELRAWHRALRTVIERLV 127 (129)
T ss_dssp --SCSSSSEEEEECT------TSCEEEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCcEEEEEcC------CCCEEEEECCCHHHHHHHHHHHHHHHHhcc
Confidence 1123689999632 135688999999999999999998876554
No 66
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=97.86 E-value=0.0001 Score=77.22 Aligned_cols=107 Identities=19% Similarity=0.266 Sum_probs=70.5
Q ss_pred cceeeeeec------cccccc----ccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCccc
Q psy3725 281 TAYEGYVKV------PKTGGV----KKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVI 350 (760)
Q Consensus 281 t~~eG~vkv------p~~~~~----kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi 350 (760)
...+||+.. -+.++. .++|++.|++|.+..|++|.............+...|+|++ ..|..+. |
T Consensus 11 v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~~~~~p~g~I~L~~--~~v~~~~--~-- 84 (263)
T 3a8p_A 11 VRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAED--SIVQSVP--E-- 84 (263)
T ss_dssp EEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC------CCCSEEEECTT--CEEEECT--T--
T ss_pred eEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCcccccccccCccceEEcCC--cEEEECC--c--
Confidence 357899861 144444 78999999999999999997643110000112345688853 2333221 1
Q ss_pred ccCCCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHh
Q psy3725 351 HATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILK 402 (760)
Q Consensus 351 ~a~~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~ 402 (760)
...-|+.|.|.+. + +.+++|.|+|+.+++.|+.+|..+.....
T Consensus 85 ---~~kk~~~F~I~t~----~--~r~y~f~A~s~ee~~~Wi~aI~~a~~~~~ 127 (263)
T 3a8p_A 85 ---HPKKEHVFCLSNS----C--GDVYLFQATSQTDLENWVTAIHSACASLF 127 (263)
T ss_dssp ---CSSCSSEEEEECT----T--SCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCCEEEEEcC----C--CcEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence 1123799999643 1 35789999999999999999998877654
No 67
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=97.86 E-value=0.00016 Score=66.89 Aligned_cols=100 Identities=13% Similarity=0.270 Sum_probs=69.0
Q ss_pred ceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceee
Q psy3725 282 AYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIF 361 (760)
Q Consensus 282 ~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if 361 (760)
.-+||+..-..+.++.||++.|+||.+..|++|..++++. +...|-| +.+.|..|... .+ . -|..|
T Consensus 13 irkGWL~k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~eke------~~G~IpL--~~~~vr~v~~~-~~--~---rk~~F 78 (125)
T 1dyn_A 13 IRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKE------KKYMLSV--DNLKLRDVEKG-FM--S---SKHIF 78 (125)
T ss_dssp EEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTTCSC------EEEEEEC--TTEEEEECCSC-SS--S---SCEEE
T ss_pred EEEEEEEEecCccccCCceeeEEEEeccceeeecCCcccc------cceEEEC--CCceEeccCCC-CC--C---CceEE
Confidence 4589997543344555799999999999999998777664 3445666 45677777643 12 2 36888
Q ss_pred eeecccCCC--CCCcceEEEeeCCHHHHHHHHHHHHH
Q psy3725 362 RITTSLMDP--PGTKNHTLMLADSDTEKTKWVVALSE 396 (760)
Q Consensus 362 ~it~s~l~~--~~~~~~l~LlA~S~~ek~kWv~~L~~ 396 (760)
.|.... +. .....++.|.|+|..++..|+.+|..
T Consensus 79 ~l~~~d-~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~r 114 (125)
T 1dyn_A 79 ALFNTE-QRNVYKDYRQLELACETQEEVDSWKASFLR 114 (125)
T ss_dssp EEEETT-SSCSSTTCSSEEEEESSHHHHHHHHHHHHH
T ss_pred EEECCC-CccccccceEEEEeCCCHHHHHHHHHHHHh
Confidence 885311 00 00124789999999999999998743
No 68
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=97.85 E-value=3.5e-05 Score=70.63 Aligned_cols=103 Identities=18% Similarity=0.310 Sum_probs=66.8
Q ss_pred cceeeeeecc---cccc---cccceEEEEEEEeCcEEEEEecCCCCCCCCcc--ceeEEeecCCCCeEEEeeccCccccc
Q psy3725 281 TAYEGYVKVP---KTGG---VKKGWVRQFVVVCDFKLFLYDISPDRNALPAV--YVSLVLDMRDEDFAVSGVRESDVIHA 352 (760)
Q Consensus 281 t~~eG~vkvp---~~~~---~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~--~~~~~ldl~d~~fsV~~V~~sdvi~a 352 (760)
...+||+.-- ..++ ..+.|++.|++|.+..|++|..+.+....|.. .+...|+|+.-... . ++|
T Consensus 8 v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~~~~~~i~L~~~~v~--~--~~d---- 79 (122)
T 1dro_A 8 EGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIE--I--ASD---- 79 (122)
T ss_dssp SSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCE--E--CCS----
T ss_pred eEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCcccccCCCcccCCCceEECCCCEEE--e--CCC----
Confidence 4578998421 1112 35899999999999999999766543322211 12235666442111 1 111
Q ss_pred CCCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 353 TKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 353 ~~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
.+.-|++|+|++. + +.+++|.|+|+.+.+.|+.+|+.+.
T Consensus 80 -~~kr~~~F~l~t~----~--~~~~lfqA~s~~e~~~Wi~ai~~~i 118 (122)
T 1dro_A 80 -YTKKKHVLRVKLA----N--GALFLLQAHDDTEMSQWVTSLKAQS 118 (122)
T ss_dssp -SSSSTTEEEEECS----S--SCEEEEECSSSHHHHHHHHHHHHHH
T ss_pred -CCCCCeEEEEEEc----C--CCEEEEECCCHHHHHHHHHHHHHHH
Confidence 2235799999632 2 3578999999999999999998764
No 69
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=97.83 E-value=0.00011 Score=79.82 Aligned_cols=101 Identities=20% Similarity=0.407 Sum_probs=71.4
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
...+||+. +.++..++|+++|++|.+..|.+|....+.. +..+|+|.+ .+|..+. ...-|+.
T Consensus 213 ~~k~G~L~--K~g~~~k~WkkRwFVL~~~~L~Yyk~~~~~~------p~G~I~L~~--~~v~~~~--------~~~~~~~ 274 (347)
T 2r09_A 213 PDREGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKE------PRGIIPLEN--LSIREVE--------DPRKPNC 274 (347)
T ss_dssp CCEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS------CSEEEECTT--CEEEEEC--------CSSCSSE
T ss_pred cccCCeeE--ecCCCcccceeEEEEEcCCEEEEEcCCCccC------CcEEEEcCC--eEEEEcc--------CCCCCCE
Confidence 35899994 4556678999999999999999997655432 344688854 3454443 2345789
Q ss_pred eeeecccCC-----C-----C-----CCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 361 FRITTSLMD-----P-----P-----GTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 361 f~it~s~l~-----~-----~-----~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
|.|.+..-. . . +...+++|.|+|+.++++|+.+|..+..
T Consensus 275 F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~ 328 (347)
T 2r09_A 275 FELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS 328 (347)
T ss_dssp EEEECSSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 999643210 0 0 1135789999999999999999998764
No 70
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=97.83 E-value=0.00012 Score=76.56 Aligned_cols=108 Identities=10% Similarity=0.200 Sum_probs=69.7
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
..++||+. +.++..++|+++|++|.+..|++|....+..+.. ....+++.+ +.|..+... -...+..-|+.
T Consensus 168 p~~~G~L~--k~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~~---~i~l~~l~~--~~v~~~~~~--~~~~~~~~~~~ 238 (291)
T 3tca_A 168 PELEGALY--LKEDGKKSWKRRYFLLRASGIYYVPKGKTKTSRD---LACFIQFEN--VNIYYGIQC--KMKYKAPTDHC 238 (291)
T ss_dssp CCCEEEEE--EECTTSSCEEEEEEEECSSEEEECCTTCCSSTTT---CEEEEEGGG--CEEEEECSH--HHHHCCSSSCE
T ss_pred CceEEEEE--EeCCCCCCceEEEEEEeCCEEEEEecCccccccC---ceeecccee--EEEEecCcc--ccccCCCCCeE
Confidence 35789994 4455678999999999999999997666554432 122344422 223222111 11112234689
Q ss_pred eeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 361 FRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
|.|.+..... +....++|.|+|+.++..|+.+|.-+.
T Consensus 239 F~i~~~~~~~-~~~~~~~l~A~s~~e~~~Wi~air~Ak 275 (291)
T 3tca_A 239 FVLKHPQIQK-ESQYIKYLCCDDARTLSQWVMGIRIAK 275 (291)
T ss_dssp EEEECTTCCS-CCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCC-CCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 9997544322 234578999999999999999997664
No 71
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=97.81 E-value=7.3e-05 Score=82.45 Aligned_cols=100 Identities=19% Similarity=0.332 Sum_probs=69.9
Q ss_pred ceeeeeecccccccc-cceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCC--CCeEEEeeccCcccccCCCccc
Q psy3725 282 AYEGYVKVPKTGGVK-KGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRD--EDFAVSGVRESDVIHATKKDIP 358 (760)
Q Consensus 282 ~~eG~vkvp~~~~~k-kgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d--~~fsV~~V~~sdvi~a~~~dip 358 (760)
..+||+. |.++.. ++|+++|++|.+..|++|+...+.. +.-.|+|.+ ..+.|....+.+. ....-+
T Consensus 270 ~k~G~L~--K~g~~~~k~WKkRwFVL~~~~L~YYk~~~d~~------~~G~I~L~~~~~~~~v~~~~~~~~---~~~~~~ 338 (386)
T 3lju_X 270 LKEGYME--KTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAF------ARGEVFIGSKESGYTVLHGFPPST---QGHHWP 338 (386)
T ss_dssp SEEEEEE--ECCTTSCSCCEEEEEEEETTEEEEESSTTCSB------CSEEEECCCGGGTCEEEESCCTTC---CSCCSC
T ss_pred ceeeeEE--EECCCCCCCCcccEEEEECCEEEEEecCCCcc------cceEEEeecceeeeeecccCCccc---cccCCC
Confidence 4689995 445544 8999999999999999998766543 234577643 2355544322211 111237
Q ss_pred eeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 359 CIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 359 ~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
+.|.|.+ |. .+++|.|+|+.|+++|+.+|..+..
T Consensus 339 ~~F~I~t-----~~--rty~l~A~s~~e~~~Wi~aL~~~i~ 372 (386)
T 3lju_X 339 HGITIVT-----PD--RKFLFACETESDQREWVAAFQKAVD 372 (386)
T ss_dssp EEEEEEC-----SS--CEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cEEEEEe-----CC--eEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 9999962 22 5789999999999999999998764
No 72
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=97.75 E-value=0.0001 Score=68.06 Aligned_cols=107 Identities=19% Similarity=0.189 Sum_probs=60.4
Q ss_pred ceeeeeecccc-cc-cccceEEEEEEEeC-cEEEEEecCCCCCCCCccceeEEeecCCCCeEEEe----eccCccc----
Q psy3725 282 AYEGYVKVPKT-GG-VKKGWVRQFVVVCD-FKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSG----VRESDVI---- 350 (760)
Q Consensus 282 ~~eG~vkvp~~-~~-~kkgw~r~~~~l~~-~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~----V~~sdvi---- 350 (760)
..+||+. |. ++ ..++|+++|++|.+ ..|++|+...+..... ....|||..-...+-. ...+.+.
T Consensus 5 ~k~G~L~--K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~---~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~ 79 (128)
T 2rlo_A 5 IKQSFLL--KRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHST---HGKEMDLLRTTVKVPGKRPPRAISAFGPSAS 79 (128)
T ss_dssp EEEEEEE--EECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTC---SCEEEESSSCEEECSSCCCCCSSCCCSCCSC
T ss_pred eeEEEEE--EecCCCccCCccEEEEEEeCCCEEEEecchhhhcccc---CCCeeeeeeeEEecCCCcccccccccccccc
Confidence 4789984 33 32 56899999999997 5666665321100000 0123555432111100 0000000
Q ss_pred --ccCCCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 351 --HATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 351 --~a~~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
.....+-++.|.|.+. . +.+++|.|+|+.|++.|+.+|+.+..
T Consensus 80 ~~~~~~~~~~~~F~I~t~-----~-~r~~~l~A~s~~e~~~Wi~ai~~~i~ 124 (128)
T 2rlo_A 80 GSAGQAEEENFEFLIVSS-----T-GQTWHFEAASFEERDAWVQAIESQIL 124 (128)
T ss_dssp CCCSSCCCCCCCEEEECT-----T-SCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCceEEEEcC-----C-CCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 0001145788998532 1 25799999999999999999987754
No 73
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=97.74 E-value=0.00018 Score=72.79 Aligned_cols=101 Identities=15% Similarity=0.280 Sum_probs=67.9
Q ss_pred cceeeeeecccc-cc-cccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccc
Q psy3725 281 TAYEGYVKVPKT-GG-VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIP 358 (760)
Q Consensus 281 t~~eG~vkvp~~-~~-~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip 358 (760)
..++||+.--.. .+ ..++|+++|++|.+..|++|....+.. +...|+|.+-.. + .+. +.. ....-|
T Consensus 106 v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~~~~------p~g~I~L~~~~~-v-~~~--~~~--~~~~k~ 173 (211)
T 1u5e_A 106 VIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ------QKGEFAIDGYDV-R-MNN--TLR--KDGKKD 173 (211)
T ss_dssp EEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSS------CSEEEECTTCEE-E-ECG--GGC--SSTTGG
T ss_pred ccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCCCcc------ceEEEEeCCcEE-E-EcC--Ccc--ccCCCC
Confidence 357899843221 11 457999999999999999997665432 345688744322 1 111 111 112346
Q ss_pred eeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 359 CIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 359 ~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
+.|.|.+. + +.+++|.|+|..++++|+.+|+.+.+
T Consensus 174 ~~F~I~t~-----~-~r~~~l~A~s~~e~~~Wi~aL~~ai~ 208 (211)
T 1u5e_A 174 CCFEICAP-----D-KRIYQFTAASPKDAEEWVQQLKFILQ 208 (211)
T ss_dssp GEEEEECS-----S-SCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcC-----C-CCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 89999642 2 35789999999999999999998764
No 74
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.72 E-value=0.00047 Score=63.71 Aligned_cols=104 Identities=18% Similarity=0.272 Sum_probs=73.8
Q ss_pred CcceeeeeecccccccccceEEEEEEEeC------cEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccC
Q psy3725 280 GTAYEGYVKVPKTGGVKKGWVRQFVVVCD------FKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHAT 353 (760)
Q Consensus 280 Gt~~eG~vkvp~~~~~kkgw~r~~~~l~~------~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~ 353 (760)
+-.++||+-.+......+.|+|.|++|-. -+|=+||..+.-.. +..+..+|.| ++-++|.+++.. . ..
T Consensus 11 ~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r--~~~~rrVIrL-sdCisV~~~~~e-~--~~ 84 (127)
T 2d9w_A 11 GAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRR--CEAARKVIRL-SDCLRVAEAGGE-A--SS 84 (127)
T ss_dssp CSSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSS--CSCCEEEECG-GGEEEEEECCSC-S--SS
T ss_pred ccccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCcccc--CCCCceEEEh-hhCCeEecccCc-c--CC
Confidence 44689999877665655669999999965 37999998764221 2235689999 778888877432 0 11
Q ss_pred CCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 354 KKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 354 ~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
.+|. ..|.|++.. .+++|.|++ .++..|+.+|-++.
T Consensus 85 pk~~-~aF~l~T~e-------r~~~laAe~-~E~~~Wi~~ic~~a 120 (127)
T 2d9w_A 85 PRDT-SAFFLETKE-------RLYLLAAPA-AERGDWVQAICLLA 120 (127)
T ss_dssp CSSC-EEEEEEESS-------CEEEEEECH-HHHHHHHHHHHHHH
T ss_pred CCcc-eEEEEEeCC-------cEEEEEeCc-HHHHHHHHHHHHHh
Confidence 2344 888997654 467788886 59999999998764
No 75
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=97.69 E-value=5.8e-05 Score=83.58 Aligned_cols=98 Identities=26% Similarity=0.398 Sum_probs=68.2
Q ss_pred Ccceeeeeec-ccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccc
Q psy3725 280 GTAYEGYVKV-PKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIP 358 (760)
Q Consensus 280 Gt~~eG~vkv-p~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip 358 (760)
+...+||+.. .+.|+..+.|+|+|++|.++.|.+|...... | ..+++|.. .+|..+.. .|-+
T Consensus 300 ~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~~~---~----~~~~~l~~--~~v~~~~~--------~~r~ 362 (407)
T 4h8s_A 300 LIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGAVA---G----GLIQDLDN--CSVMAVDC--------EDRR 362 (407)
T ss_dssp CSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTCSS---C----CCCBCSSC--CEEEEECC--------TTCS
T ss_pred cceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCCCCC---C----CeEEECCc--eEEEECCC--------CCCC
Confidence 4567999854 3445667899999999999998888543221 2 22456633 34544332 3457
Q ss_pred eeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 359 CIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 359 ~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
+.|.|.+. ..+.+++|.|+|+.++..|+.+|+.+.+
T Consensus 363 ~cF~i~~~-----~~~~~~~l~A~s~~e~~~Wi~ai~~a~~ 398 (407)
T 4h8s_A 363 YCFQITTP-----NGKSGIILQAESRKENEEWICAINNISR 398 (407)
T ss_dssp SEEEEECT-----TSSCCEEEECSSSHHHHHHHHHHHHHHS
T ss_pred ceEEEEec-----CCCceEEEEcCCHHHHHHHHHHHHHHHH
Confidence 89999642 2234689999999999999999998865
No 76
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=97.69 E-value=0.00026 Score=72.36 Aligned_cols=95 Identities=15% Similarity=0.347 Sum_probs=67.4
Q ss_pred cceeeeeeccccc--c-cccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcc
Q psy3725 281 TAYEGYVKVPKTG--G-VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDI 357 (760)
Q Consensus 281 t~~eG~vkvp~~~--~-~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~di 357 (760)
...+||+.--... . ..++|+++|++|.+..|.+|....+. .+...|+|.+-.. |..+. +-
T Consensus 58 ~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~~------~~~g~I~L~~~~~-v~~~~----------~k 120 (228)
T 3tfm_A 58 ALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEE------KLKGTVEVRSAKE-IIDNT----------NK 120 (228)
T ss_dssp SSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTCC------SEEEEEEGGGCSE-EEEET----------TT
T ss_pred cceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCCCc------ceeEEEEcCCCEE-eccCC----------CC
Confidence 3578998532211 1 23899999999999999999866542 2456788855322 22221 23
Q ss_pred ceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 358 PCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 358 p~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
++.|.|.+ + ...++|.|+|+.++++|+.+|+.+..
T Consensus 121 ~~~F~I~t-----~--~r~~~l~A~s~~e~~~Wv~aL~~~i~ 155 (228)
T 3tfm_A 121 ENGIDIIM-----A--DRTFHLIAESPEDASQWFSVLSQVHS 155 (228)
T ss_dssp TSEEEEEC-----S--SCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CcEEEEEc-----C--CcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 68899953 2 25799999999999999999998875
No 77
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=97.63 E-value=0.00045 Score=66.01 Aligned_cols=102 Identities=19% Similarity=0.276 Sum_probs=66.0
Q ss_pred eeeeeecccccccccceEEEEEEEeCcEEEEEecCC----------CCCC-CC-----------------ccc-------
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISP----------DRNA-LP-----------------AVY------- 327 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~----------~~~~-~p-----------------~~~------- 327 (760)
-+||+. +.+++.+.|.+.|+||++.+|+++.-.. .+.. .| +..
T Consensus 3 k~G~L~--~~~~~~~~w~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l~ 80 (150)
T 2fjl_A 3 KNGILY--LEDPVNHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHLD 80 (150)
T ss_dssp EEEEEE--EEETTTTEEEEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSSC
T ss_pred cceEEE--eecCCCCCceEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhccc
Confidence 368873 4456789999999999999988875111 0100 00 000
Q ss_pred --------eeEEeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 328 --------VSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 328 --------~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
..-+|||.. ..|.-+ ...+.+.|++|+|..... + ..++.|.|+|..+...|+.+|.++.
T Consensus 81 E~~~lG~l~kG~IdL~g--c~V~~~------~~~~~~~~~vF~I~~~~~---~-~~~~~laAds~Eem~dW~kaIreaa 147 (150)
T 2fjl_A 81 ENSPLGDLLRGVLDVPA--CQIAIR------PEGKNNRLFVFSISMPSV---A-QWSLDVAADSQEELQDWVKKIREVA 147 (150)
T ss_dssp TTTTTTTCCCEEECSTT--CEEEEE------TTCSSSCSCEEEEECTTT---S-SCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccccccccccceEecCc--cEEEec------cCCCCCCceEEEEeCCCC---C-CceEEEEeCCHHHHHHHHHHHHHHH
Confidence 024555522 223222 234567899999965332 1 4579999999999999999999874
No 78
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=97.57 E-value=0.00018 Score=75.23 Aligned_cols=97 Identities=21% Similarity=0.323 Sum_probs=66.2
Q ss_pred cceeeeeecccccccccceEEEEEEEeCc-------EEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccC
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDF-------KLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHAT 353 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~-------kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~ 353 (760)
...+||+.-- +.|+++|++|.+. .|.+|+...+-.. ....+..+|+|.+ ..+|..+.
T Consensus 10 v~k~G~L~K~------K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~-~~~~p~g~I~L~~-~~~V~~~~-------- 73 (264)
T 1qqg_A 10 VRKVGYLRKP------KSMHKRFFVLRAASEAGGPARLEYYENEKKWRH-KSSAPKRSIPLES-CFNINKRA-------- 73 (264)
T ss_dssp EEEEEEEECT------TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHT-TCSCCSEEEEGGG-EEEEEEEC--------
T ss_pred ccEEEEEEEC------CCCEeEEEEEECCCCCCCCCEEEEECCCccccc-cccCcceEEEeec-eEEEEecc--------
Confidence 4679998522 7899999999998 9999986543100 0012455788843 34443322
Q ss_pred CCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHH
Q psy3725 354 KKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRI 400 (760)
Q Consensus 354 ~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~ 400 (760)
...-++.|.|.+. ..+++|.|+|+.++++|+.+|..+..-
T Consensus 74 ~~~~~~~F~I~t~-------~rty~l~A~se~e~~~Wi~aL~~~~~~ 113 (264)
T 1qqg_A 74 DSKNKHLVALYTR-------DEHFAIAADSEAEQDSWYQALLQLHNR 113 (264)
T ss_dssp CSSCSSEEEEEES-------SCEEEEECSSHHHHHHHHHHHHHHC--
T ss_pred CCCCCcEEEEEEC-------CEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 1344689999633 357899999999999999999887653
No 79
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=97.44 E-value=0.001 Score=61.22 Aligned_cols=103 Identities=18% Similarity=0.269 Sum_probs=64.4
Q ss_pred ceeeeeecc---cccc--cccceEEEEEEEeCcEEEEEecCCCCCC----CCc--cceeEEeecCCCCeEEEeeccCccc
Q psy3725 282 AYEGYVKVP---KTGG--VKKGWVRQFVVVCDFKLFLYDISPDRNA----LPA--VYVSLVLDMRDEDFAVSGVRESDVI 350 (760)
Q Consensus 282 ~~eG~vkvp---~~~~--~kkgw~r~~~~l~~~kL~~yd~~~~~~~----~p~--~~~~~~ldl~d~~fsV~~V~~sdvi 350 (760)
..+|++.-- ..|. .++.|++.|+||.+..|++|-...+... .|. ..+...|||+.- .|..+. .|
T Consensus 9 ~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a--~v~~~~-~d-- 83 (124)
T 3pp2_A 9 DKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGA--TLSWAP-KD-- 83 (124)
T ss_dssp CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTC--EEEECC-GG--
T ss_pred EEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCC--EEEecc-cc--
Confidence 357887421 1121 2369999999999999999953322211 010 135677888652 222111 11
Q ss_pred ccCCCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 351 HATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 351 ~a~~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
...-|.+|+|++. .+.+++|-|+|+.+...|+.+|.++.
T Consensus 84 ---~~krk~vF~l~t~------~~~~ylfqA~s~~e~~~Wi~aI~~aI 122 (124)
T 3pp2_A 84 ---KSSRKNVLELRSR------DGSEYLIQHDSEAIISTWHKAIAQGI 122 (124)
T ss_dssp ---GCSSSSEEEEECT------TSCEEEEECSCHHHHHHHHHHHHHHH
T ss_pred ---cCCCceEEEEECC------CCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 1223689999632 13578899999999999999998764
No 80
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=97.42 E-value=0.0003 Score=77.61 Aligned_cols=99 Identities=15% Similarity=0.238 Sum_probs=67.1
Q ss_pred cceeeeeecccccccccceEEEEEEE--eCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccc
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVV--CDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIP 358 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l--~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip 358 (760)
...+||+ .|.|+..+.|+|+|+|| .+..|++|..+.++.+ ..+|+|.+ +..+...+ +..-|
T Consensus 146 ~~keG~L--~KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~p------~g~I~L~~----~~~~~~~~-----~~~~~ 208 (386)
T 3lju_X 146 GYREGFL--WKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEP------KAVMKIEH----LNATFQPA-----KIGHP 208 (386)
T ss_dssp SEEEEEE--EEECSSSCCEEEEEEEEETTTTEEEEEC-----CC------SEEEEGGG----EEEEECHH-----HHTST
T ss_pred cccccce--eeeccccCCceEEEEEEEcCCCEEEEECCCCccCc------ccEEEeec----cEEEEccc-----ccCCC
Confidence 3579998 56677788999999999 7999999987665543 34677744 22222111 22357
Q ss_pred eeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 359 CIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 359 ~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
+.|.|++.. + +...+++|+|+|..++.+|+.+|..+..
T Consensus 209 ~~f~I~~~~-~--~~~R~y~l~A~s~~e~~~Wi~aIr~a~~ 246 (386)
T 3lju_X 209 HGLQVTYLK-D--NSTRNIFIYHEDGKEIVDWFNALRAARF 246 (386)
T ss_dssp TCEEEEEEE-T--TEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEec-C--CCceEEEEEcCCHHHHHHHHHhhhhccc
Confidence 888886433 1 1236899999999999999999987754
No 81
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=97.38 E-value=0.00049 Score=75.52 Aligned_cols=98 Identities=24% Similarity=0.400 Sum_probs=64.2
Q ss_pred Ccceeeeeecccccc-cccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccc
Q psy3725 280 GTAYEGYVKVPKTGG-VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIP 358 (760)
Q Consensus 280 Gt~~eG~vkvp~~~~-~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip 358 (760)
+...+||+.--...+ .++.|+++|++|.++.|++|.. .+. .+...|+|+.- +|..+. ..+-+
T Consensus 277 ~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~-~~~------~~~~~i~l~~~--~v~~~~--------~~~r~ 339 (385)
T 2q13_A 277 LTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQAR-GDV------AGGLAMDIDNC--SVMAVD--------CEDRR 339 (385)
T ss_dssp CSCCEEEEEEC--------CCEEEEEEEETTEEEEECS-SCS------SCEEEEECTTC--EEEEEC--------CTTCS
T ss_pred CccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecC-CCc------CCCceEEccce--EEEecc--------ccCCC
Confidence 346799985322222 2346999999999999988875 221 13456777542 343332 23567
Q ss_pred eeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 359 CIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 359 ~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
+.|.|.+.. + ..+++|.|+|+.+++.|+.+|..+..
T Consensus 340 ~~F~i~t~~----~-~~~~~l~A~s~~e~~~Wi~ai~~~~~ 375 (385)
T 2q13_A 340 YCFQITSFD----G-KKSSILQAESKKDHEEWICTINNISK 375 (385)
T ss_dssp SEEEEECTT----S-CBCCCEECSSHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCC----C-CeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 899996331 1 14689999999999999999987754
No 82
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=97.31 E-value=0.0008 Score=64.30 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=68.3
Q ss_pred eeeeeecccccc-cccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceee
Q psy3725 283 YEGYVKVPKTGG-VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIF 361 (760)
Q Consensus 283 ~eG~vkvp~~~~-~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if 361 (760)
+.||+++-++-+ ..|||++.|+++.|..|.+|...++... .+...|.|++ ..|.+ ||--+..| ++|
T Consensus 28 L~dyLk~~~pkrltLKgfKryWfv~kDt~LsyYKSkEe~~g----eP~~~inLrG--CEVtP----DVnva~~K---f~i 94 (165)
T 4bbk_A 28 LADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELEQG----EPIEKLNLRG--CEIVP----DVNVSGRK---FGI 94 (165)
T ss_dssp EEEEEEEEC-------CCEEEEEEEETTEEEEESSGGGTTS----CCSEEEECTT--CEEEE----EEETTTTE---EEE
T ss_pred hHhHHHhhcccccccccceeEEEEEeCCEEEEEcCHHHhcC----CCceEEecCc--cEEec----ccccccce---eeE
Confidence 669998877655 4699999999999999999988887553 3467889977 34432 22234445 677
Q ss_pred eeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 362 RITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 362 ~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
|+..-. .+| -.+++|-++|+.+.++|+.++.=+
T Consensus 95 kL~ip~--~~g-m~e~~LrcdsE~QYa~WMAAcrLA 127 (165)
T 4bbk_A 95 KLLIPV--ADG-MNEVYLRCDHEDQYARWMAACILA 127 (165)
T ss_dssp EEEEEE--TTE-EEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEecCC--CCc-ceeeeeecCCHHHHHHHHHHhhhc
Confidence 774321 223 468999999999999999988544
No 83
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=97.17 E-value=0.0022 Score=61.95 Aligned_cols=99 Identities=17% Similarity=0.286 Sum_probs=70.2
Q ss_pred eeeeeecccccc-cccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceee
Q psy3725 283 YEGYVKVPKTGG-VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIF 361 (760)
Q Consensus 283 ~eG~vkvp~~~~-~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if 361 (760)
+.+|+|+-++-+ ..|||++.|+++.|..|.+|...++.... |...|.|+.=+++- ||-.+..| +.+
T Consensus 49 L~dyLk~~~pk~~tLKgyKryWFv~kd~~LsyYKskEe~~ge----P~~~I~LrGCEVtp------DVnva~~K---f~I 115 (173)
T 4f7h_A 49 LADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESSGT----PAHQMNLRGCEVTP------DVNISGQK---FNI 115 (173)
T ss_dssp EEEEEEEECCBTTBCCCCEEEEEEEETTEEEEESCGGGCSSC----CSEEEECTTCEEEE------EEETTTTE---EEE
T ss_pred hHhHHHhhcchhcccccceeEEEEEeCCEEEEEcCHhHhcCC----CceEEecCceEEec------cccccccc---eeE
Confidence 568888877665 46999999999999999999998875543 45678886644332 22233344 555
Q ss_pred eeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 362 RITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 362 ~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
++..-. ..| -.+++|-|+|+...++|+.++.=+
T Consensus 116 kL~vP~--~~g-m~e~~Lrcd~E~qya~WMAAcrLA 148 (173)
T 4f7h_A 116 KLLIPV--AEG-MNEIWLRCDNEKQYAHWMAACRLA 148 (173)
T ss_dssp EEEEEE--TTE-EEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEeccC--CCC-cceeeeecCCHHHHHHHHHHhhhh
Confidence 553221 223 368999999999999999988544
No 84
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=97.14 E-value=0.00026 Score=61.28 Aligned_cols=57 Identities=25% Similarity=0.471 Sum_probs=50.3
Q ss_pred CCCCceeEEeeecCCcccCCCcccccc-cccCeeeecCCCcccccccccccCCCCCCC
Q psy3725 207 SSKHHQFITRTFTSPTKCNHCTSLMVG-LTRQGVVCDICGFACHLSCCDKVPPSCPVP 263 (760)
Q Consensus 207 ~~~~H~F~~~~f~~pt~C~~C~~~i~G-l~rQG~~C~~C~~~cH~kC~~~vp~~C~~p 263 (760)
....|.|....+..+.+|.+|.+.+++ +.-+|++|.=|++.+|.+|...++..|+..
T Consensus 24 ~~~~H~WveGNl~~~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~~~eC~lG 81 (84)
T 1r79_A 24 IAMPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTKCSGP 81 (84)
T ss_dssp CCBCCCEEESCCCTTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHCCSCBCCS
T ss_pred ccceeeEEccCCCCCCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhccCcCCCC
Confidence 356799999999888999999998775 455999999999999999999999999764
No 85
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.08 E-value=0.001 Score=62.45 Aligned_cols=99 Identities=12% Similarity=0.218 Sum_probs=67.1
Q ss_pred eeeeeecccccc-cccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceee
Q psy3725 283 YEGYVKVPKTGG-VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIF 361 (760)
Q Consensus 283 ~eG~vkvp~~~~-~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if 361 (760)
+.+++++-++-+ .-++|++.|+++.|+-|++|...++.... |...|+|+. ..|.+ |+-++ .-+++|
T Consensus 11 l~~~l~~~~pkk~tlK~~KrrWFvlk~~~L~YyK~kee~~~e----Pig~I~L~g--ceV~p----d~~~~---~~kf~i 77 (137)
T 2ys3_A 11 LKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGD----PIQQLNLKG--CEVVP----DVNVS---GQKFCI 77 (137)
T ss_dssp EECCCEECCTTSCCSSSSCCCEEEECSSCEEEESSTTTTTSC----CSCCBCTTT--CEEEE----CCBGG---GTBEEE
T ss_pred hhHHHHhhCccccccccceeEEEEEeCCEEEEECCchhccCC----CceEEECCC--CEEec----ccccc---CCceEE
Confidence 668887766654 45899999999999999999655544322 345688865 33432 22222 235777
Q ss_pred eeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHH
Q psy3725 362 RITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397 (760)
Q Consensus 362 ~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~ 397 (760)
++..- .+.....++|-|+|+.+.++|++++.-+
T Consensus 78 kl~iP---s~~g~r~y~l~cdsEeqy~~WMaA~rlA 110 (137)
T 2ys3_A 78 KLLVP---SPEGMSEIYLRCQDEQQYARWMAGCRLA 110 (137)
T ss_dssp EEEEE---CSSSEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEcc---CCCCceEEEEECCCHHHHHHHHHHHHHh
Confidence 77421 1112367999999999999999998754
No 86
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=96.82 E-value=0.0088 Score=62.19 Aligned_cols=112 Identities=20% Similarity=0.277 Sum_probs=71.4
Q ss_pred ceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCc-ccccCCCcccee
Q psy3725 282 AYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESD-VIHATKKDIPCI 360 (760)
Q Consensus 282 ~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sd-vi~a~~~dip~i 360 (760)
..+||+..- ++.++.|+++|++|-++.|++|.....+.+ ......++|.+ +.|-.+...- ...|. -|+.
T Consensus 133 ~~~G~L~~k--e~~~K~WkkRyfvLr~sgLy~~~k~~sk~~---r~l~~~~~L~~--~~vy~~~~~kKk~kaP---t~~~ 202 (256)
T 3hk0_A 133 EIQGFLHVK--ELGKKSWKKLYVCLRRSGLYCSTKGTSAAP---RHLQLLADLED--SNIFSLIAGRKQYNAP---TDHG 202 (256)
T ss_dssp EEEEEEEEE--CTTSSCEEEEEEEEETTEEEEESSTTCCCG---GGEEEEECCTT--EEEEEESSTHHHHCCS---SSEE
T ss_pred cceeEEEEe--cCCCCcceEEEEEEeCCEEEEEecCCCCcc---ccceEEEEcCC--CEEEEecccccccCCC---CCCE
Confidence 367998533 334689999999999999988875543321 12223346533 6664433211 01111 1577
Q ss_pred eeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHH--Hhhc
Q psy3725 361 FRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRI--LKRN 404 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~--l~~~ 404 (760)
|-|...... .+..+..+|.|+++.++..|+.+|..++-. |.+|
T Consensus 203 F~ik~~k~~-~~~~~~~~lcaede~~~~~W~~aIr~ak~g~~l~~n 247 (256)
T 3hk0_A 203 LCIKPNKVR-NETKELRLLCAEDEQTRTSWMTAFRLLKYGMLLYQN 247 (256)
T ss_dssp EEEEETTCS-SCCTTCEEEEESSHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred EEEEccccc-CCCceEEEEEeCCHHHHHHHHHHHHHHHhhHHHHHh
Confidence 777654432 234577999999999999999999888763 4444
No 87
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=96.67 E-value=0.0068 Score=63.82 Aligned_cols=106 Identities=10% Similarity=0.149 Sum_probs=65.4
Q ss_pred eeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCc-ccccCCCccceee
Q psy3725 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESD-VIHATKKDIPCIF 361 (760)
Q Consensus 283 ~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sd-vi~a~~~dip~if 361 (760)
.+||+. ..++.+++|+++|++|-++.|++|....++.+. .....++|.+ +.|-.+...- ...| --|+.|
T Consensus 160 ~~G~L~--~k~~~~k~WkkRyfvLr~sgLyy~~K~~sk~~r---~l~~l~~L~~--~~VY~~~~~kkk~ka---Pt~~~F 229 (281)
T 4gmv_A 160 IEGVLW--LKDDGKKSWKKRYFLLRASGIYYVPKGKAKVSR---DLVCFLQLDH--VNVYYGQDYRNKYKA---PTDYCL 229 (281)
T ss_dssp CEEEEE--EECTTSSCEEEEEEEECSSCEEEC------------CCEEEECGGG--CEEEEESSHHHHTCC---SCSCEE
T ss_pred cEEEEE--EECCCCCCCeEEEEEEeCCEEEEEeCCCCCccc---cceEEEEcCC--cEEEEecccccccCC---CCCcEE
Confidence 678884 334456899999999999999988765444321 2234456633 5564443211 1122 225788
Q ss_pred eeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 362 RITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 362 ~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
-|...+... +..+..+|.|++++++..|+.+|--++-
T Consensus 230 ~ik~~~~~~-~~~~~~~~caede~~~~~Wv~Air~ak~ 266 (281)
T 4gmv_A 230 VLKHPQIQK-KSQYIKYLCCDDVRTLHQWVNGIRIAKY 266 (281)
T ss_dssp EEECTTCCS-CCTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEecCccCC-CCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 887655432 2356789999999999999999976654
No 88
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=96.48 E-value=1 Score=46.80 Aligned_cols=276 Identities=9% Similarity=0.081 Sum_probs=141.8
Q ss_pred CCeeEEEEec--CCCeEEEEEc-C------CCCC--CceEE------------cCCCCCeeEEEEecCCCeEEEEECCCC
Q psy3725 422 TKKIYQMDYI--PKEQLLVVLA-G------KQRY--VQIAR------------VGDTKKIYQMDYIPEEQLLVVLAGKQR 478 (760)
Q Consensus 422 ~~~i~Caa~~--~~~rllvGTe-~------l~~~--~~l~r------------v~~~k~V~QI~Vi~e~~lLlvLsgk~r 478 (760)
...|+|.+.- ++..|+.|+. | +... ..... -+....|..|...+..+-+++.++.+.
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 122 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK 122 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCC
Confidence 5578888853 3456888886 2 2211 01111 125678999999994443344455578
Q ss_pred eEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe-cCCcc
Q psy3725 479 YVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI-LPTLA 557 (760)
Q Consensus 479 ~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~ 557 (760)
.|+++++..-.. ....... .....++........ . +++++-. .-.|.+|.+...+. ...+. ...++
T Consensus 123 ~i~iwd~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~-~-~~~~~~~---~~~v~~~d~~~~~~----~~~~~~~~~~v 189 (408)
T 4a11_B 123 TLKVWDTNTLQT--ADVFNFE--ETVYSHHMSPVSTKH-C-LVAVGTR---GPKVQLCDLKSGSC----SHILQGHRQEI 189 (408)
T ss_dssp EEEEEETTTTEE--EEEEECS--SCEEEEEECSSCSSC-C-EEEEEES---SSSEEEEESSSSCC----CEEECCCCSCE
T ss_pred eEEEeeCCCCcc--ceeccCC--CceeeeEeecCCCCC-c-EEEEEcC---CCeEEEEeCCCcce----eeeecCCCCcE
Confidence 999999854221 1112222 222222222221111 1 4444432 22688888754332 22333 45678
Q ss_pred eEEEEecCce--EEEEEcCC-eEEEEecCCCCceeecCCCCCc----ccccccCCCCceEEEEe-CCCeEEEEe--cceE
Q psy3725 558 QCIHIFSEGR--LCVGYQSG-FSIYKFSQDNRPIPLIHQDNPL----VSLLTYSPVDALLAIEL-PRGEFLLVF--HSLA 627 (760)
Q Consensus 558 ~sl~~~~~~~--LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~s----l~f~~~~~~~pl~i~~l-~~~EfLLcy--~~~g 627 (760)
.++.|.+++. |++|...| ..++|+.........++..+.. ..........++..+.. +++.+|++- |..-
T Consensus 190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 269 (408)
T 4a11_B 190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269 (408)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeE
Confidence 8999998764 66777655 7888986322222222221111 11111123345544444 355566543 3333
Q ss_pred EEEcC-CCCcccccc---eecCCCCcEEEe----eCCeEEEEeCCeeEEEECcCCcEEEEEecCC--cee--cCCCCCEE
Q psy3725 628 AYVDS-QGHKSREKE---IMYPALPTGASY----MDGQLLIFSETHVDVFNAESGDWLQTVNIRR--ALP--LDTRGSLC 695 (760)
Q Consensus 628 vfVD~-~G~rsR~~~---I~W~~~P~~~ay----~~PYLlvf~~~~IEVr~i~tg~lVQtI~~~~--ir~--L~s~G~l~ 695 (760)
.+.|. .|+...... ..-...+..+.. ...++++...+.|.|+++.+++.++++.... +.- ...+|.++
T Consensus 270 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 349 (408)
T 4a11_B 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQEL 349 (408)
T ss_dssp EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEE
T ss_pred EEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEE
Confidence 34443 444332211 111111111221 2347777889999999999999999996543 322 23567666
Q ss_pred EEecCCccEEEEeec
Q psy3725 696 FSLANDIPYVVYLAN 710 (760)
Q Consensus 696 l~s~~~~~~~~~~~~ 710 (760)
+.+..+-.+.++.-.
T Consensus 350 ~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 350 YSGSRDCNILAWVPS 364 (408)
T ss_dssp EEEETTSCEEEEEEC
T ss_pred EEECCCCeEEEEeCC
Confidence 655555555555444
No 89
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.39 E-value=1.4 Score=47.41 Aligned_cols=230 Identities=10% Similarity=0.068 Sum_probs=122.2
Q ss_pred CCeeEEEEecCCCeEEEEEc-C------CCCCCceEEcC-CCCCeeEEEEecCC-CeEEEEECCCCeEEEEECCCccCCC
Q psy3725 422 TKKIYQMDYIPKEQLLVVLA-G------KQRYVQIARVG-DTKKIYQMDYIPEE-QLLVVLAGKQRYVRLVPVRALDGDE 492 (760)
Q Consensus 422 ~~~i~Caa~~~~~rllvGTe-~------l~~~~~l~rv~-~~k~V~QI~Vi~e~-~lLlvLsgk~r~L~l~~L~~L~~~~ 492 (760)
...|.|.+...++.|+.|+. + +.....+..+. ....|..+.+.+.. +-+++.++.++.|+++++..-....
T Consensus 162 ~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp SSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred CcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 34567776544457778876 2 33331222332 55789999998633 3445555667899999986533210
Q ss_pred cc-------------------eeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe
Q psy3725 493 VE-------------------WVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI 552 (760)
Q Consensus 493 ~~-------------------~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~ 552 (760)
.. ...+.. ...+..+ . .. +. +|+++-. .-.|.+|.+...+ ....+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~-~~-~~---~l~~~~~---d~~i~vwd~~~~~----~~~~~~ 307 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--S-GH-GN---IVVSGSY---DNTLIVWDVAQMK----CLYILS 307 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCSSCEEEE--E-EE-TT---EEEEEET---TSCEEEEETTTTE----EEEEEC
T ss_pred cccccCCcceEeeccCCCeEEEEEccCccceEEEE--c-CC-CC---EEEEEeC---CCeEEEEECCCCc----EEEEec
Confidence 00 000000 0111111 1 11 22 3444432 2268888875432 333443
Q ss_pred -cCCcceEEEEecCc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEEEe--cceE
Q psy3725 553 -LPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVF--HSLA 627 (760)
Q Consensus 553 -lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy--~~~g 627 (760)
....+.++.|..++ .|++|...| ..++|+. ++.....+. ....++..+..+ +.+|++- |..-
T Consensus 308 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~-~~~~~~~~~-----------~h~~~v~~~~~~-~~~l~s~s~dg~v 374 (464)
T 3v7d_B 308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLE-NGELMYTLQ-----------GHTALVGLLRLS-DKFLVSAAADGSI 374 (464)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TTEEEEEEC-----------CCSSCEEEEEEC-SSEEEEEETTSEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEEe-----------CCCCcEEEEEEc-CCEEEEEeCCCcE
Confidence 35678899998765 677777655 7788886 333222111 233455555554 4455432 2232
Q ss_pred EEEcCC-CCcccccceecCCCCcEEE--eeCCeEEEEeCCeeEEEECcCCcEEEEE
Q psy3725 628 AYVDSQ-GHKSREKEIMYPALPTGAS--YMDGQLLIFSETHVDVFNAESGDWLQTV 680 (760)
Q Consensus 628 vfVD~~-G~rsR~~~I~W~~~P~~~a--y~~PYLlvf~~~~IEVr~i~tg~lVQtI 680 (760)
.+-|.. +... ..+.-......++ ....+|++-.++.|.|+++.+|++++.+
T Consensus 375 ~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~ 428 (464)
T 3v7d_B 375 RGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHAN 428 (464)
T ss_dssp EEEETTTCCEE--EEEECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESC
T ss_pred EEEECCCCcee--eeecCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehh
Confidence 333432 2221 1222222223333 3455888888999999999999999874
No 90
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.28 E-value=1.4 Score=46.04 Aligned_cols=243 Identities=12% Similarity=0.179 Sum_probs=129.4
Q ss_pred CCeeEEEEecCCCeEEEEEc-C------CCCCC------ceEEc-CCCCCeeEEEEecC----C---CeEEEEECCCCeE
Q psy3725 422 TKKIYQMDYIPKEQLLVVLA-G------KQRYV------QIARV-GDTKKIYQMDYIPE----E---QLLVVLAGKQRYV 480 (760)
Q Consensus 422 ~~~i~Caa~~~~~rllvGTe-~------l~~~~------~l~rv-~~~k~V~QI~Vi~e----~---~lLlvLsgk~r~L 480 (760)
...|+|.+ +..+.|+.|+. + +.... .+..+ .....|+.+...++ . ++|+ .++.+..|
T Consensus 16 ~~~i~~~~-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~-s~~~dg~i 93 (397)
T 1sq9_A 16 DADIFSVS-ACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA-TTSFSGDL 93 (397)
T ss_dssp SSCEEEEE-ECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE-EEETTSCE
T ss_pred hcCeEEEE-ecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE-EEcCCCCE
Confidence 56788888 46677888877 2 22221 13333 35678999999998 4 4444 45557899
Q ss_pred EEEECCCccCCCcc-eeecCcc------cceEEEEeeee--CCCccceE-EEEEEecCCceEEEEEEecC------Ccc-
Q psy3725 481 RLVPVRALDGDEVE-WVKIPET------KGCLSFTTGPL--THTRTQHC-LALAVKRQNSSQIILYEITR------TKT- 543 (760)
Q Consensus 481 ~l~~L~~L~~~~~~-~~kl~et------Kgc~~f~~g~~--~~~~~~~~-LcVAvKr~~~~~Vl~ye~~~------~k~- 543 (760)
+++++..-...... ...+... ..+..++.... ..+. + |+++-. .-.|.+|.+.. .+.
T Consensus 94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS---HRLVATDV---KGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C---EEEEEEET---TSCEEEEEEESSSSHHHHTTT
T ss_pred EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc---eEEEEEeC---CCcEEEEeCCcccccccccee
Confidence 99998543321100 2222222 22333333210 2333 4 555542 12677888754 221
Q ss_pred cceeeeeEe--------cCCcceEEEEecCceEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCC---CCceEE
Q psy3725 544 RHKRLHEVI--------LPTLAQCIHIFSEGRLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSP---VDALLA 611 (760)
Q Consensus 544 ~fkk~kE~~--------lP~~~~sl~~~~~~~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~---~~pl~i 611 (760)
.+.....+. -...+.+|.|..++.|++|+..| ..++|+. +......+... ... ..++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~--------~~h~~~~~~i~~ 238 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELS-TLRPLYNFESQ--------HSMINNSNSIRS 238 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETT-TTEEEEEEECC--------C---CCCCCEEE
T ss_pred eccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECC-CCceeEEEecc--------ccccccCCccce
Confidence 122222443 36778999999887666677655 6677876 33322222110 001 234444
Q ss_pred EEe-CCCeEEEEecc-----eEEEEcC-CCCccccccee------------cCCCCcEEEee--CCeEEEEe-CCeeEEE
Q psy3725 612 IEL-PRGEFLLVFHS-----LAAYVDS-QGHKSREKEIM------------YPALPTGASYM--DGQLLIFS-ETHVDVF 669 (760)
Q Consensus 612 ~~l-~~~EfLLcy~~-----~gvfVD~-~G~rsR~~~I~------------W~~~P~~~ay~--~PYLlvf~-~~~IEVr 669 (760)
+.. +++.+|++-.. .-...|. .|+..+...-. -.....+++|. ..||++.. +..|-|+
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 318 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 443 34555554322 2222343 44433221110 23344566665 45777766 4569999
Q ss_pred ECcCCcEEEEEe
Q psy3725 670 NAESGDWLQTVN 681 (760)
Q Consensus 670 ~i~tg~lVQtI~ 681 (760)
++.+++.++++.
T Consensus 319 d~~~~~~~~~~~ 330 (397)
T 1sq9_A 319 DVKTKERITTLN 330 (397)
T ss_dssp ETTTTEEEEEEE
T ss_pred EcCCCceeEEEe
Confidence 999999999998
No 91
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.21 E-value=1.6 Score=46.31 Aligned_cols=222 Identities=11% Similarity=0.127 Sum_probs=120.1
Q ss_pred CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceE
Q psy3725 454 DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQ 532 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~ 532 (760)
....|+.+...++.+.|++-+ .+..|+++++..-.. ...+.. ...+..++. . +. +|+++-. .-.
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~---~-~~---~l~~~~~---dg~ 197 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGL-GNGLVDIYDVESQTK----LRTMAGHQARVGCLSW---N-RH---VLSSGSR---SGA 197 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCE----EEEECCCSSCEEEEEE---E-TT---EEEEEET---TSE
T ss_pred CCCCEEEEEECCCCCEEEEEC-CCCeEEEEECcCCeE----EEEecCCCCceEEEEE---C-CC---EEEEEcC---CCC
Confidence 467899999999887766655 467999999843211 122221 222333332 2 22 4444432 237
Q ss_pred EEEEEecCCcccceeeeeE-ecCCcceEEEEecCc-eEEEEEcC-CeEEEEecCCCCceeecCCCCCcccccccCCCCce
Q psy3725 533 IILYEITRTKTRHKRLHEV-ILPTLAQCIHIFSEG-RLCVGYQS-GFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDAL 609 (760)
Q Consensus 533 Vl~ye~~~~k~~fkk~kE~-~lP~~~~sl~~~~~~-~LcVG~~~-gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl 609 (760)
|.+|.+..... ....+ .....+.++.|..++ .|++|... ...++|+. +......+. ....++
T Consensus 198 i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~-----------~~~~~v 262 (401)
T 4aez_A 198 IHHHDVRIANH---QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR-SSIPKFTKT-----------NHNAAV 262 (401)
T ss_dssp EEEEETTSSSC---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-CSSEEEEEC-----------CCSSCC
T ss_pred EEEEecccCcc---eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC-CCCccEEec-----------CCcceE
Confidence 88898753321 12222 246788899999765 67777764 47788886 333222111 112233
Q ss_pred EEEEeC-CCe-EEEE----ecceEEEEcC-CCCcccccceecCCCCcEEEee--CCeEEEEe---CCeeEEEECcCCcEE
Q psy3725 610 LAIELP-RGE-FLLV----FHSLAAYVDS-QGHKSREKEIMYPALPTGASYM--DGQLLIFS---ETHVDVFNAESGDWL 677 (760)
Q Consensus 610 ~i~~l~-~~E-fLLc----y~~~gvfVD~-~G~rsR~~~I~W~~~P~~~ay~--~PYLlvf~---~~~IEVr~i~tg~lV 677 (760)
..+... ++. ++.+ +|..-.+.|. .|+..+ .+.-.+...+++|. .++|++.+ ++.|.|+++.++.++
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~ 340 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN--TVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT 340 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE--EEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE--EEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce
Confidence 222332 233 3332 2444444453 444433 24444555667774 45777765 789999999999888
Q ss_pred EEEe--cCC--cee--cCCCCCEEEEecCCccEEEE
Q psy3725 678 QTVN--IRR--ALP--LDTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 678 QtI~--~~~--ir~--L~s~G~l~l~s~~~~~~~~~ 707 (760)
+... ... +.- ...+|..++.+..+-.+.++
T Consensus 341 ~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 341 KQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376 (401)
T ss_dssp EEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEE
T ss_pred eEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 8753 322 221 23466655554444444444
No 92
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=96.20 E-value=0.0067 Score=63.81 Aligned_cols=90 Identities=16% Similarity=0.269 Sum_probs=55.4
Q ss_pred ccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCCCcc
Q psy3725 296 KKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKN 375 (760)
Q Consensus 296 kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~~~~ 375 (760)
.+.|++.|++|.|..|++|.............+...|+|.+- .+.. + .....-+.+|+|++. .+.
T Consensus 36 ~r~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L~ga--~v~~--a-----~d~~kKk~vF~L~t~------~g~ 100 (279)
T 3a8n_A 36 RRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENS--IVQA--V-----PEHPKKDFVFCLSNS------LGD 100 (279)
T ss_dssp CCCCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSC--EECC--C-----TTSSSSCSCCCEEET------TTE
T ss_pred CCCCeEEEEEEeCCEEEEEecccccccccccCCCceEeccCc--EEEe--c-----cccCCCCcEEEEEcC------CCC
Confidence 579999999999999999965432211000012223444221 1110 1 111223579999744 246
Q ss_pred eEEEeeCCHHHHHHHHHHHHHHHHH
Q psy3725 376 HTLMLADSDTEKTKWVVALSELHRI 400 (760)
Q Consensus 376 ~l~LlA~S~~ek~kWv~~L~~~~~~ 400 (760)
.++|-|+|..+...|+.+|..+...
T Consensus 101 ~yLFQA~s~eEm~~WI~aI~~a~~~ 125 (279)
T 3a8n_A 101 AFLFQTTSQTELENWITAIHSACAA 125 (279)
T ss_dssp EEECCCSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999987663
No 93
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.17 E-value=1.5 Score=45.64 Aligned_cols=224 Identities=8% Similarity=0.076 Sum_probs=110.8
Q ss_pred eeEEEEec-CCCeEEEEEc-C-C---C-CCCceEEcC-CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcce
Q psy3725 424 KIYQMDYI-PKEQLLVVLA-G-K---Q-RYVQIARVG-DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEW 495 (760)
Q Consensus 424 ~i~Caa~~-~~~rllvGTe-~-l---~-~~~~l~rv~-~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~ 495 (760)
.|.|.+.- ++..|+.|+. + + + ....+..+. ....|..|...++.+.|++.+ .+..|+++++..-.. ...
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~--~~~ 186 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMD-VENVTILWNVISGTV--MQH 186 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEE-TTCCEEEEETTTTEE--EEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEe-cCCeEEEEECCCCcE--EEE
Confidence 56777643 3445888877 3 1 1 111333333 456899999999888777654 468999999854211 000
Q ss_pred eecCcccce------------EEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeE-ecCCcceEEEE
Q psy3725 496 VKIPETKGC------------LSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEV-ILPTLAQCIHI 562 (760)
Q Consensus 496 ~kl~etKgc------------~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~-~lP~~~~sl~~ 562 (760)
.......+. ...++....++ .++++.. .-.|.+|.+...+. ...+ ....++.+|.|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~g~i~~~d~~~~~~----~~~~~~~~~~i~~~~~ 255 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDDD----KFVIPGP---KGAIFVYQITEKTP----TGKLIGHHGPISVLEF 255 (425)
T ss_dssp ECCC---------------CCCBSCCEEEETT----EEEEECG---GGCEEEEETTCSSC----SEEECCCSSCEEEEEE
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCCC----EEEEEcC---CCeEEEEEcCCCce----eeeeccCCCceEEEEE
Confidence 111110000 00011111122 2333322 23688888754432 1222 33567889999
Q ss_pred ecCc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEE-Eecc-eEEEEcC-CCCcc
Q psy3725 563 FSEG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLL-VFHS-LAAYVDS-QGHKS 637 (760)
Q Consensus 563 ~~~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLL-cy~~-~gvfVD~-~G~rs 637 (760)
..++ .|++|...| ..++|+. +......+. ....++..+....+.+|+ +-.+ .-...|. .|+..
T Consensus 256 ~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~-----------~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 323 (425)
T 1r5m_A 256 NDTNKLLLSASDDGTLRIWHGG-NGNSQNCFY-----------GHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLL 323 (425)
T ss_dssp ETTTTEEEEEETTSCEEEECSS-SBSCSEEEC-----------CCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEE
T ss_pred CCCCCEEEEEcCCCEEEEEECC-CCccceEec-----------CCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEe
Confidence 9765 677777554 6777876 332222221 112233223332222332 2222 2222333 23222
Q ss_pred cccceec-CCCCcEEEee--CCeEEEEe-CCeeEEEECcCCc
Q psy3725 638 REKEIMY-PALPTGASYM--DGQLLIFS-ETHVDVFNAESGD 675 (760)
Q Consensus 638 R~~~I~W-~~~P~~~ay~--~PYLlvf~-~~~IEVr~i~tg~ 675 (760)
. .+.- .....+++|. ..+|++-. +..|.|+++.++.
T Consensus 324 ~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 324 A--LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp E--EEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred E--ecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 1 1222 2334456665 34666666 4579999999998
No 94
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.96 E-value=1.7 Score=44.30 Aligned_cols=264 Identities=13% Similarity=0.099 Sum_probs=138.5
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCCCceEEcC-CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRYVQIARVG-DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE 492 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~~~l~rv~-~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~ 492 (760)
...|+|.+.- ++..|+.|+. + +.....+..+. ....|..+...++.+.|++-+ .+..|+++++..-..
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~-- 108 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGS-ADYSIKLWDVSNGQC-- 108 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTTEEEEEETTTCCE--
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcE--
Confidence 5678888743 3445888876 2 33332333333 456899999999877776654 478999999853211
Q ss_pred cceeecCcccceEEEEeeeeCCCccceEEEEEEec--CCceEEEEEEecCCccc--c-----eeeeeEec-CC--cceEE
Q psy3725 493 VEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKR--QNSSQIILYEITRTKTR--H-----KRLHEVIL-PT--LAQCI 560 (760)
Q Consensus 493 ~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr--~~~~~Vl~ye~~~~k~~--f-----kk~kE~~l-P~--~~~sl 560 (760)
...+.....+..++. ...+. +|+++... ...-.|.+|.+...... + .....+.. +. .+.++
T Consensus 109 --~~~~~~~~~v~~~~~--~~~~~---~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 109 --VATWKSPVPVKRVEF--SPCGN---YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp --EEEEECSSCEEEEEE--CTTSS---EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred --EEEeecCCCeEEEEE--ccCCC---EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 112222222222222 22333 45555431 00126778876533211 0 01111222 22 78889
Q ss_pred EEecCc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEe-CCCeEEEEe--cceEEEEcC-CC
Q psy3725 561 HIFSEG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIEL-PRGEFLLVF--HSLAAYVDS-QG 634 (760)
Q Consensus 561 ~~~~~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l-~~~EfLLcy--~~~gvfVD~-~G 634 (760)
.|..++ .|++|...| ..++|+.........+. ....++..+.. +++.+|++- |..-.+.|. .|
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID-----------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-----------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-----------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 998765 677777765 66788862122222221 12233433333 344455433 223333443 33
Q ss_pred CcccccceecCCCCcEEEee--CCeEEEEeCC---------------eeEEEECcCCcEEEEEecCC--cee--cCCCCC
Q psy3725 635 HKSREKEIMYPALPTGASYM--DGQLLIFSET---------------HVDVFNAESGDWLQTVNIRR--ALP--LDTRGS 693 (760)
Q Consensus 635 ~rsR~~~I~W~~~P~~~ay~--~PYLlvf~~~---------------~IEVr~i~tg~lVQtI~~~~--ir~--L~s~G~ 693 (760)
+..+ .+.-......+++. ..|+++...+ .|.++++.+++.++++.... +.- ...+|.
T Consensus 251 ~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 328 (369)
T 3zwl_B 251 QVLK--KYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGT 328 (369)
T ss_dssp CEEE--EEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred ceee--eecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCC
Confidence 3332 23333344455554 3476666554 69999999999999986544 332 234677
Q ss_pred EEEEecCCccEEEEe
Q psy3725 694 LCFSLANDIPYVVYL 708 (760)
Q Consensus 694 l~l~s~~~~~~~~~~ 708 (760)
+++....+-.+.+|.
T Consensus 329 ~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 329 SYASGGEDGFIRLHH 343 (369)
T ss_dssp EEEEEETTSEEEEEE
T ss_pred EEEEEcCCCeEEEEE
Confidence 666555445454443
No 95
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=95.70 E-value=2.1 Score=43.41 Aligned_cols=236 Identities=12% Similarity=0.064 Sum_probs=125.8
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCCC---ceEE-cCCCCCeeEEEEecCCC-eEEEEECCCCeEEEEEC-CC
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRYV---QIAR-VGDTKKIYQMDYIPEEQ-LLVVLAGKQRYVRLVPV-RA 487 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~~---~l~r-v~~~k~V~QI~Vi~e~~-lLlvLsgk~r~L~l~~L-~~ 487 (760)
...|.|.+.. ++..|+.|+. + +.... .+.. ......|+.+.+.++.+ .|++ ++.+..|+++++ ..
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~~wd~~~~ 89 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV-GTVQGEILKVDLIGS 89 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEE-EETTSCEEEECSSSS
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEE-EcCCCeEEEEEeccC
Confidence 4467777743 4556888876 2 22221 1222 34567899999999977 5554 555789999987 54
Q ss_pred ccCCCcceeecCc---ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCC-ccc----ceeeeeEecCCcceE
Q psy3725 488 LDGDEVEWVKIPE---TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRT-KTR----HKRLHEVILPTLAQC 559 (760)
Q Consensus 488 L~~~~~~~~kl~e---tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~-k~~----fkk~kE~~lP~~~~s 559 (760)
-. ...+.. ......++... +. .|+++-. .-.|.+|.+... +.. .+....+..+..+.+
T Consensus 90 ~~-----~~~~~~~~~~~~v~~l~~~~---~~---~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 155 (342)
T 1yfq_A 90 PS-----FQALTNNEANLGICRICKYG---DD---KLIAASW---DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT 155 (342)
T ss_dssp SS-----EEECBSCCCCSCEEEEEEET---TT---EEEEEET---TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred Cc-----eEeccccCCCCceEEEEeCC---CC---EEEEEcC---CCeEEEEcccccccccccccCCeeeEEeeCCceEE
Confidence 21 122222 22233333322 23 3444432 227888886430 000 122334557889999
Q ss_pred EEEecCceEEEEEcC-CeEEEEecCCCCc-eeecCCCCCcccccccCCCCceEEEEeC--CCeEEE-EecceEEEE---c
Q psy3725 560 IHIFSEGRLCVGYQS-GFSIYKFSQDNRP-IPLIHQDNPLVSLLTYSPVDALLAIELP--RGEFLL-VFHSLAAYV---D 631 (760)
Q Consensus 560 l~~~~~~~LcVG~~~-gF~ivdl~~~~~~-~~Ll~~~d~sl~f~~~~~~~pl~i~~l~--~~EfLL-cy~~~gvfV---D 631 (760)
|.|.++ .|.+|+.. ...++|+...... ..... .....++..+... ++.+|+ +..+-.+.+ +
T Consensus 156 ~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 156 MDTNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEE----------SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp EEECSS-EEEEEESTTEEEEEESSCCTTCCCEEEE----------CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred EEecCC-cEEEEeCCCeEEEEECCccccccceeee----------cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence 999988 58888876 4778888621211 11110 0112233333443 344444 333333332 3
Q ss_pred CCCCc---ccccceecCC----------CCcEEEee--CCeEEEEeCC-eeEEEECcCCcEEEEEecC
Q psy3725 632 SQGHK---SREKEIMYPA----------LPTGASYM--DGQLLIFSET-HVDVFNAESGDWLQTVNIR 683 (760)
Q Consensus 632 ~~G~r---sR~~~I~W~~----------~P~~~ay~--~PYLlvf~~~-~IEVr~i~tg~lVQtI~~~ 683 (760)
..|.. .....+.-.. ...+++|. ..||++-..+ .|-|+++.+++.+.++...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred CCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence 23111 1111232221 33456664 3477776654 7999999999999987653
No 96
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.64 E-value=2.6 Score=43.96 Aligned_cols=232 Identities=11% Similarity=0.084 Sum_probs=128.3
Q ss_pred eeEEEEec-CCCeEEEEE-c-C------CCCCCceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcc
Q psy3725 424 KIYQMDYI-PKEQLLVVL-A-G------KQRYVQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVE 494 (760)
Q Consensus 424 ~i~Caa~~-~~~rllvGT-e-~------l~~~~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~ 494 (760)
.+.|.+.- ++.+|+++. . + +.....+..+.....|..+.+.++.+.|++....+..|+++++..-..
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~---- 108 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV---- 108 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeE----
Confidence 46676643 344565554 3 2 223312233334458999999999887777665568999999853211
Q ss_pred eeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCce-EEEEEc
Q psy3725 495 WVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGR-LCVGYQ 573 (760)
Q Consensus 495 ~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~-LcVG~~ 573 (760)
...+....+...++ ....+. .|+++... .-.|.+|.+... +....+.....+.++.|..+++ |.+...
T Consensus 109 ~~~~~~~~~~~~~~--~s~dg~---~l~~~~~~--~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 177 (391)
T 1l0q_A 109 AGTVKTGKSPLGLA--LSPDGK---KLYVTNNG--DKTVSVINTVTK----AVINTVSVGRSPKGIAVTPDGTKVYVANF 177 (391)
T ss_dssp EEEEECSSSEEEEE--ECTTSS---EEEEEETT--TTEEEEEETTTT----EEEEEEECCSSEEEEEECTTSSEEEEEET
T ss_pred EEEEeCCCCcceEE--ECCCCC---EEEEEeCC--CCEEEEEECCCC----cEEEEEecCCCcceEEECCCCCEEEEEeC
Confidence 11222222333333 223333 45444422 337888886543 2345566677888999998764 544443
Q ss_pred C--CeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEEEec-----ceEEEEcCC-CCcccccceecC
Q psy3725 574 S--GFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVFH-----SLAAYVDSQ-GHKSREKEIMYP 645 (760)
Q Consensus 574 ~--gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~-----~~gvfVD~~-G~rsR~~~I~W~ 645 (760)
. ...++|+. +......+.. ...+.++.--.++.+|++-+ ..-...|.. |+... .+.=.
T Consensus 178 ~~~~v~~~d~~-~~~~~~~~~~-----------~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~--~~~~~ 243 (391)
T 1l0q_A 178 DSMSISVIDTV-TNSVIDTVKV-----------EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA--RIPVG 243 (391)
T ss_dssp TTTEEEEEETT-TTEEEEEEEC-----------SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE--EEECC
T ss_pred CCCEEEEEECC-CCeEEEEEec-----------CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEE--EEecC
Confidence 3 26777775 3333222211 11222222223555555432 333344543 43322 23334
Q ss_pred CCCcEEEeeC--CeEEEEe--CCeeEEEECcCCcEEEEEecCC
Q psy3725 646 ALPTGASYMD--GQLLIFS--ETHVDVFNAESGDWLQTVNIRR 684 (760)
Q Consensus 646 ~~P~~~ay~~--PYLlvf~--~~~IEVr~i~tg~lVQtI~~~~ 684 (760)
..|..+++.. .||++.. ++.|.|+++.+|+++++++...
T Consensus 244 ~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 244 PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK 286 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence 5677788763 4786653 6789999999999999986543
No 97
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=95.38 E-value=2.6 Score=42.40 Aligned_cols=118 Identities=9% Similarity=0.081 Sum_probs=69.4
Q ss_pred CeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCc----ccceEEEEeeeeCCCccceEEEEEEecC----
Q psy3725 457 KIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPE----TKGCLSFTTGPLTHTRTQHCLALAVKRQ---- 528 (760)
Q Consensus 457 ~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~e----tKgc~~f~~g~~~~~~~~~~LcVAvKr~---- 528 (760)
.+..+.+-++-+.+++.+..+..|+++++..... .....+.. ..+.+.++. ...+. +|+++....
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~--s~dg~---~l~~~~~~~~~~~ 107 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET--LGRIDLSTPEERVKSLFGAAL--SPDGK---TLAIYESPVRLEL 107 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--EEEEECCBTTEEEECTTCEEE--CTTSS---EEEEEEEEEEECS
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe--EeeEEcCCcccccccccceEE--CCCCC---EEEEEeccccccc
Confidence 5788999998888777777678899999854211 11122211 001111121 22333 566553100
Q ss_pred -----CceEEEEEEecCCcccceeeeeEecCCcceEEEEecCce-EEEEEcCCeEEEEecCCCCc
Q psy3725 529 -----NSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGR-LCVGYQSGFSIYKFSQDNRP 587 (760)
Q Consensus 529 -----~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~-LcVG~~~gF~ivdl~~~~~~ 587 (760)
..-.|.+|..... +....+..+..+.++.|..+|+ |.++ .....++|+. ++..
T Consensus 108 ~~~~~~~~~i~v~d~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~-~~~~ 166 (337)
T 1pby_B 108 THFEVQPTRVALYDAETL----SRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPE-AGTL 166 (337)
T ss_dssp SCEEECCCEEEEEETTTT----EEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETT-TTEE
T ss_pred ccccccCceEEEEECCCC----cEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEEECC-CCcE
Confidence 1137888886432 3345677788888999998775 6666 6678888886 3443
No 98
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.34 E-value=3.2 Score=43.14 Aligned_cols=221 Identities=11% Similarity=0.124 Sum_probs=117.7
Q ss_pred CCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcc-cceEEEEeeeeCCCccceEEEEEEecCCceEEE
Q psy3725 456 KKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPET-KGCLSFTTGPLTHTRTQHCLALAVKRQNSSQII 534 (760)
Q Consensus 456 k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~et-Kgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl 534 (760)
..|+.|.+.++.++|++-+ .+..|++++. .+.. ...+... ..+..++. ...+. +|+++-. .-.|.
T Consensus 109 ~~v~~~~~s~~~~~l~~~~-~dg~i~i~~~---~~~~--~~~~~~~~~~v~~~~~--~~~~~---~l~~~~~---d~~i~ 174 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGV-ENGELRLWNK---TGAL--LNVLNFHRAPIVSVKW--NKDGT---HIISMDV---ENVTI 174 (425)
T ss_dssp BCEEEEEECTTSSEEEEEE-TTSCEEEEET---TSCE--EEEECCCCSCEEEEEE--CTTSS---EEEEEET---TCCEE
T ss_pred CceEEEEEcCCCCEEEEEe-CCCeEEEEeC---CCCe--eeeccCCCccEEEEEE--CCCCC---EEEEEec---CCeEE
Confidence 3899999999877776654 4678999983 2211 1222221 22222222 22333 4554432 22678
Q ss_pred EEEecCCcccceeeeeEecCCc----------------ceEEEEecCceEEEEEcCC-eEEEEecCCCCceeecCCCCCc
Q psy3725 535 LYEITRTKTRHKRLHEVILPTL----------------AQCIHIFSEGRLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPL 597 (760)
Q Consensus 535 ~ye~~~~k~~fkk~kE~~lP~~----------------~~sl~~~~~~~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~s 597 (760)
+|.+...+ ....+..+.. +.++.|.+++.+++|...| ..++|+. +......+.
T Consensus 175 iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~-~~~~~~~~~----- 244 (425)
T 1r5m_A 175 LWNVISGT----VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQIT-EKTPTGKLI----- 244 (425)
T ss_dssp EEETTTTE----EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETT-CSSCSEEEC-----
T ss_pred EEECCCCc----EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcC-CCceeeeec-----
Confidence 88875433 2333444333 7788999888888888765 6677776 322222111
Q ss_pred ccccccCCCCceEEEEe-CCCeEEEEe--cceEEEEcC-CCCccccccee-cCCCCcEEEeeCC-eEEEEe-CCeeEEEE
Q psy3725 598 VSLLTYSPVDALLAIEL-PRGEFLLVF--HSLAAYVDS-QGHKSREKEIM-YPALPTGASYMDG-QLLIFS-ETHVDVFN 670 (760)
Q Consensus 598 l~f~~~~~~~pl~i~~l-~~~EfLLcy--~~~gvfVD~-~G~rsR~~~I~-W~~~P~~~ay~~P-YLlvf~-~~~IEVr~ 670 (760)
....++..+.. +++.+|++- +..-.+.|. .|+... .+. -.....+++|... ++++.. +..|-|++
T Consensus 245 ------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d 316 (425)
T 1r5m_A 245 ------GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN--CFYGHSQSIVSASWVGDDKVISCSMDGSVRLWS 316 (425)
T ss_dssp ------CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSE--EECCCSSCEEEEEEETTTEEEEEETTSEEEEEE
T ss_pred ------cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccce--EecCCCccEEEEEECCCCEEEEEeCCCcEEEEE
Confidence 12234433333 344454432 222223343 233222 122 2233456667644 555554 56799999
Q ss_pred CcCCcEEEEEecCC--cee--cCCCCCEEEEecCCccEEEEe
Q psy3725 671 AESGDWLQTVNIRR--ALP--LDTRGSLCFSLANDIPYVVYL 708 (760)
Q Consensus 671 i~tg~lVQtI~~~~--ir~--L~s~G~l~l~s~~~~~~~~~~ 708 (760)
+.+++.++++.... +.- .+.+|.+++.+..+-.+.+|.
T Consensus 317 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 317 LKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358 (425)
T ss_dssp TTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 99999999986543 332 235676666555444454443
No 99
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=95.23 E-value=3.6 Score=43.18 Aligned_cols=259 Identities=9% Similarity=0.076 Sum_probs=126.7
Q ss_pred CCCeEEEEEc-C------CCCCCceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeec-Ccccc
Q psy3725 432 PKEQLLVVLA-G------KQRYVQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKI-PETKG 503 (760)
Q Consensus 432 ~~~rllvGTe-~------l~~~~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl-~etKg 503 (760)
++.+|+.|+. + +... ...+......+..+.+....+-+++.++.+..|+++++..- .. ...+ .....
T Consensus 67 ~g~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~-~~~~~~h~~~ 141 (420)
T 3vl1_A 67 VGSHLYKARLDGHDFLFNTIIR-DGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN---LQ-REIDQAHVSE 141 (420)
T ss_dssp EETTEEEEEETTEEEEEECCSE-ETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSC---EE-EEETTSSSSC
T ss_pred cCCeEEEEEcCCcEEEEEeccc-ceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCc---ce-eeecccccCc
Confidence 4556777765 2 2221 22223333466666666555555555666789999987421 10 1122 12223
Q ss_pred eEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCc-eEEEEEcCC-eEEEE
Q psy3725 504 CLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEG-RLCVGYQSG-FSIYK 580 (760)
Q Consensus 504 c~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~-~LcVG~~~g-F~ivd 580 (760)
+..++. ...+. +|+.+-. .-+|.+|.+...+. ...+. ....+.+|.|.+++ .|+.|...| ..++|
T Consensus 142 v~~~~~--~~~~~---~l~s~s~---d~~i~iwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 209 (420)
T 3vl1_A 142 ITKLKF--FPSGE---ALISSSQ---DMQLKIWSVKDGSN----PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209 (420)
T ss_dssp EEEEEE--CTTSS---EEEEEET---TSEEEEEETTTCCC----CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cEEEEE--CCCCC---EEEEEeC---CCeEEEEeCCCCcC----ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE
Confidence 333332 22333 4555543 22788999765432 23343 46788999999775 577777665 77888
Q ss_pred ecCCCCceeecCC-CC-----CcccccccC-------CCCceEEEEe-CCCeEEEEec--ceEEEEcC-CCCccccccee
Q psy3725 581 FSQDNRPIPLIHQ-DN-----PLVSLLTYS-------PVDALLAIEL-PRGEFLLVFH--SLAAYVDS-QGHKSREKEIM 643 (760)
Q Consensus 581 l~~~~~~~~Ll~~-~d-----~sl~f~~~~-------~~~pl~i~~l-~~~EfLLcy~--~~gvfVD~-~G~rsR~~~I~ 643 (760)
+. ++.....+.. .+ .+++|.... ...++..+.. +++.+|++-. ..-.+.|. .|+......-.
T Consensus 210 ~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 288 (420)
T 3vl1_A 210 CG-TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK 288 (420)
T ss_dssp TT-TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred CC-CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence 86 3333322211 00 011111000 0011111111 2344554322 22222343 33332221112
Q ss_pred cCCCCcEEEeeCC---eEEEEeC-CeeEEEECcCCc-EEEEEecC---Cceec-CCCCCEEEEecCCccEEEEe
Q psy3725 644 YPALPTGASYMDG---QLLIFSE-THVDVFNAESGD-WLQTVNIR---RALPL-DTRGSLCFSLANDIPYVVYL 708 (760)
Q Consensus 644 W~~~P~~~ay~~P---YLlvf~~-~~IEVr~i~tg~-lVQtI~~~---~ir~L-~s~G~l~l~s~~~~~~~~~~ 708 (760)
......+++|... ||++-.. ..|.|+++.++. .++++... .+..+ .++|.+++.+..+-.+.++.
T Consensus 289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEE
T ss_pred cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEe
Confidence 3344556777644 6666654 579999999985 47777542 23332 24566555555444444443
No 100
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.23 E-value=4.3 Score=47.02 Aligned_cols=226 Identities=8% Similarity=0.065 Sum_probs=120.5
Q ss_pred CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcc-cceEEEEeeeeCCCccceEEEEEEecCCceE
Q psy3725 454 DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPET-KGCLSFTTGPLTHTRTQHCLALAVKRQNSSQ 532 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~et-Kgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~ 532 (760)
....|+.|.+-|+.+.|++-+ .+..|+++++..-. ....+... ..+..++. ...+. +|+++-. .-.
T Consensus 12 h~~~v~~i~~sp~~~~la~~~-~~g~v~iwd~~~~~----~~~~~~~~~~~v~~~~~--s~~~~---~l~~~~~---dg~ 78 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTL-YSGRVEIWNYETQV----EVRSIQVTETPVRAGKF--IARKN---WIIVGSD---DFR 78 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTE----EEEEEECCSSCEEEEEE--EGGGT---EEEEEET---TSE
T ss_pred CCCceEEEEECCCCCEEEEEe-CCCEEEEEECCCCc----eEEEEecCCCcEEEEEE--eCCCC---EEEEEeC---CCe
Confidence 456799999999888777655 46789999874311 01122211 22232222 22233 4555542 237
Q ss_pred EEEEEecCCcccceeeeeEe-cCCcceEEEEecCc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCce
Q psy3725 533 IILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDAL 609 (760)
Q Consensus 533 Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl 609 (760)
|.+|.+..++ ....+. .++.+.++.|.+++ .|++|...| ..++++.+.......+. ....++
T Consensus 79 i~vw~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-----------~~~~~v 143 (814)
T 3mkq_A 79 IRVFNYNTGE----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-----------GHEHFV 143 (814)
T ss_dssp EEEEETTTCC----EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-----------CCSSCE
T ss_pred EEEEECCCCc----EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-----------CCCCcE
Confidence 8889875433 233444 56789999999876 677788765 67788863212222111 122333
Q ss_pred EEEEeC--CCeEEE-EecceEE-EEcC-CCCcccccceecCCCCcEEEee----CCeEEEEe-CCeeEEEECcCCcEEEE
Q psy3725 610 LAIELP--RGEFLL-VFHSLAA-YVDS-QGHKSREKEIMYPALPTGASYM----DGQLLIFS-ETHVDVFNAESGDWLQT 679 (760)
Q Consensus 610 ~i~~l~--~~EfLL-cy~~~gv-fVD~-~G~rsR~~~I~W~~~P~~~ay~----~PYLlvf~-~~~IEVr~i~tg~lVQt 679 (760)
..+..+ ++.+|+ +..+-.| +.|. .|.........-......++|. .+||++.. +..|.|+++.++..+++
T Consensus 144 ~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 223 (814)
T 3mkq_A 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223 (814)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence 333332 233333 2322222 2343 2332221111112334456663 35777665 45799999999999999
Q ss_pred EecC--Cceec--CCCCCEEEEecCCccEEEE
Q psy3725 680 VNIR--RALPL--DTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 680 I~~~--~ir~L--~s~G~l~l~s~~~~~~~~~ 707 (760)
+... .+..+ +++|.+++....+-.+.+|
T Consensus 224 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vw 255 (814)
T 3mkq_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 8644 34332 3566655544433334333
No 101
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.12 E-value=4.3 Score=43.45 Aligned_cols=221 Identities=11% Similarity=0.128 Sum_probs=119.7
Q ss_pred CCeeEEEEecCCCeEEEEEc-C------CCCCCceEEc-CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCc
Q psy3725 422 TKKIYQMDYIPKEQLLVVLA-G------KQRYVQIARV-GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEV 493 (760)
Q Consensus 422 ~~~i~Caa~~~~~rllvGTe-~------l~~~~~l~rv-~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~ 493 (760)
...|.|.+ ++++.|+.|+. + +.....+..+ +....|..+..- .+. ++.++.+..|+++++..-..
T Consensus 159 ~~~v~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~-l~s~s~dg~i~~wd~~~~~~--- 231 (445)
T 2ovr_B 159 TGGVWSSQ-MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKR-VVSGSRDATLRVWDIETGQC--- 231 (445)
T ss_dssp SSCEEEEE-EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTE-EEEEETTSEEEEEESSSCCE---
T ss_pred CCCEEEEE-ecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCE-EEEEeCCCEEEEEECCCCcE---
Confidence 34566666 45667888876 2 3333122223 245678888874 344 44455678999999853211
Q ss_pred ceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCceEEEE
Q psy3725 494 EWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEGRLCVG 571 (760)
Q Consensus 494 ~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~~LcVG 571 (760)
...+.. ...+..++. . +. +++++-. .-.|.+|.+...+ ...++. ....+.++.|-+. .|++|
T Consensus 232 -~~~~~~~~~~v~~~~~---~-~~---~l~~~~~---dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~-~l~~~ 295 (445)
T 2ovr_B 232 -LHVLMGHVAAVRCVQY---D-GR---RVVSGAY---DFMVKVWDPETET----CLHTLQGHTNRVYSLQFDGI-HVVSG 295 (445)
T ss_dssp -EEEEECCSSCEEEEEE---C-SS---CEEEEET---TSCEEEEEGGGTE----EEEEECCCSSCEEEEEECSS-EEEEE
T ss_pred -EEEEcCCcccEEEEEE---C-CC---EEEEEcC---CCEEEEEECCCCc----EeEEecCCCCceEEEEECCC-EEEEE
Confidence 112211 122222222 2 23 3444432 2267888865432 334444 3567888999544 88888
Q ss_pred EcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEE-Ee-cceEEEEcC-CCCccccccee----
Q psy3725 572 YQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLL-VF-HSLAAYVDS-QGHKSREKEIM---- 643 (760)
Q Consensus 572 ~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLL-cy-~~~gvfVD~-~G~rsR~~~I~---- 643 (760)
...| ..++|+. ++.....+. ....++..+...+ .+|+ +. |..-.+.|. .|+.... +.
T Consensus 296 ~~d~~i~i~d~~-~~~~~~~~~-----------~~~~~v~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~ 360 (445)
T 2ovr_B 296 SLDTSIRVWDVE-TGNCIHTLT-----------GHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQCLQT--LQGPNK 360 (445)
T ss_dssp ETTSCEEEEETT-TCCEEEEEC-----------CCCSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEE--ECSTTS
T ss_pred eCCCeEEEEECC-CCCEEEEEc-----------CCcccEEEEEEeC-CEEEEEeCCCeEEEEECCCCcEEEE--EccCCC
Confidence 8655 7788886 333322221 1122333444433 3444 33 222223343 4544322 22
Q ss_pred cCCCCcEEEeeCCeEEEEeC-CeeEEEECcCCcEEEEE
Q psy3725 644 YPALPTGASYMDGQLLIFSE-THVDVFNAESGDWLQTV 680 (760)
Q Consensus 644 W~~~P~~~ay~~PYLlvf~~-~~IEVr~i~tg~lVQtI 680 (760)
-.....++++...||++-+. ..|-|+++.+|+.++++
T Consensus 361 ~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 361 HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp CSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeee
Confidence 23344567787778887774 56999999999999998
No 102
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.04 E-value=4.6 Score=43.29 Aligned_cols=251 Identities=11% Similarity=0.141 Sum_probs=129.4
Q ss_pred CCeeEEEEecCCCeEEEEEc-C------CCCCCceEE-c-CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC
Q psy3725 422 TKKIYQMDYIPKEQLLVVLA-G------KQRYVQIAR-V-GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE 492 (760)
Q Consensus 422 ~~~i~Caa~~~~~rllvGTe-~------l~~~~~l~r-v-~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~ 492 (760)
...|.|.. ++++.|+.|+. | +... ...+ + ++...|..+.. +.+++ +.++.+..|+++++..-..
T Consensus 133 ~~~v~~~~-~d~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~--~~~~l-~sg~~dg~i~vwd~~~~~~-- 205 (435)
T 1p22_A 133 SKGVYCLQ-YDDQKIVSGLRDNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVI-ITGSSDSTVRVWDVNTGEM-- 205 (435)
T ss_dssp CCCEEEEE-CCSSEEEEEESSSCEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEE-EEEETTSCEEEEESSSCCE--
T ss_pred CCcEEEEE-ECCCEEEEEeCCCeEEEEeCCCC-eEEEEEcCCCCcEEEEEE--CCCEE-EEEcCCCeEEEEECCCCcE--
Confidence 55688887 48888999987 2 2333 2332 2 34567888877 44544 4455578999999853211
Q ss_pred cceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeee-EecCCcceEEEEecCceEEE
Q psy3725 493 VEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHE-VILPTLAQCIHIFSEGRLCV 570 (760)
Q Consensus 493 ~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE-~~lP~~~~sl~~~~~~~LcV 570 (760)
...+.. ...+..++. .+ . .|+++-. .-.|.+|.+...... ..... ......+.++.|-++ .|++
T Consensus 206 --~~~~~~h~~~v~~l~~---~~-~---~l~s~s~---dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~-~l~s 271 (435)
T 1p22_A 206 --LNTLIHHCEAVLHLRF---NN-G---MMVTCSK---DRSIAVWDMASPTDI-TLRRVLVGHRAAVNVVDFDDK-YIVS 271 (435)
T ss_dssp --EEEECCCCSCEEEEEC---CT-T---EEEEEET---TSCEEEEECSSSSCC-EEEEEECCCSSCEEEEEEETT-EEEE
T ss_pred --EEEEcCCCCcEEEEEE---cC-C---EEEEeeC---CCcEEEEeCCCCCCc-eeeeEecCCCCcEEEEEeCCC-EEEE
Confidence 112221 122222222 22 2 3444432 226888887544321 11111 233567888999655 8888
Q ss_pred EEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEEEec-ceEEEEcC-CCCcccccceecC-C
Q psy3725 571 GYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVFH-SLAAYVDS-QGHKSREKEIMYP-A 646 (760)
Q Consensus 571 G~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~-~~gvfVD~-~G~rsR~~~I~W~-~ 646 (760)
|...| ..++|+. ++....-+. ....++..+...++.++.+.. ..-.+.|. .|...+. +.-. .
T Consensus 272 ~~~dg~i~vwd~~-~~~~~~~~~-----------~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~h~~ 337 (435)
T 1p22_A 272 ASGDRTIKVWNTS-TCEFVRTLN-----------GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRV--LEGHEE 337 (435)
T ss_dssp EETTSEEEEEETT-TCCEEEEEE-----------CCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE--ECCCSS
T ss_pred EeCCCeEEEEECC-cCcEEEEEc-----------CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEE--EeCCcC
Confidence 88765 6778886 333222111 123344444443333333332 22223343 3443322 2212 2
Q ss_pred CCcEEEeeCCeEEEEe-CCeeEEEECcCCc---------EEEEEecCC--ceecCCCCCEEEEecCCccEEEE
Q psy3725 647 LPTGASYMDGQLLIFS-ETHVDVFNAESGD---------WLQTVNIRR--ALPLDTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 647 ~P~~~ay~~PYLlvf~-~~~IEVr~i~tg~---------lVQtI~~~~--ir~L~s~G~l~l~s~~~~~~~~~ 707 (760)
...++++...||++-. +..|-|+++.++. .++++.... +.-+.-+|..++.+..+-.+.++
T Consensus 338 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iw 410 (435)
T 1p22_A 338 LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 410 (435)
T ss_dssp CEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEE
T ss_pred cEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEE
Confidence 3345667556776666 4569999998876 788875433 22222245544444443444333
No 103
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=94.93 E-value=3.7 Score=41.66 Aligned_cols=238 Identities=9% Similarity=0.086 Sum_probs=124.0
Q ss_pred CCeeEEEEecCC----CeEEEEEc-C------CCC-CCceEEc--CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCC
Q psy3725 422 TKKIYQMDYIPK----EQLLVVLA-G------KQR-YVQIARV--GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRA 487 (760)
Q Consensus 422 ~~~i~Caa~~~~----~rllvGTe-~------l~~-~~~l~rv--~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~ 487 (760)
...|+|.+.--. ..|+.|+. + +.. ...+.+. .....|+.+...++.+.|++-+ .+..|+++++..
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iwd~~~ 117 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS-CDKTAKMWDLSS 117 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc-CCCcEEEEEcCC
Confidence 567888885322 35888887 2 332 2133222 3567899999999888777654 478999999853
Q ss_pred ccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCce
Q psy3725 488 LDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGR 567 (760)
Q Consensus 488 L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~ 567 (760)
-.. .........+..++......+. +|+++-. .-.|.+|.+...+ ....+..+..+.++.+..+ .
T Consensus 118 ~~~----~~~~~~~~~v~~~~~~~~~~~~---~l~~~~~---dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~-~ 182 (368)
T 3mmy_A 118 NQA----IQIAQHDAPVKTIHWIKAPNYS---CVMTGSW---DKTLKFWDTRSSN----PMMVLQLPERCYCADVIYP-M 182 (368)
T ss_dssp TEE----EEEEECSSCEEEEEEEECSSCE---EEEEEET---TSEEEEECSSCSS----CSEEEECSSCEEEEEEETT-E
T ss_pred CCc----eeeccccCceEEEEEEeCCCCC---EEEEccC---CCcEEEEECCCCc----EEEEEecCCCceEEEecCC-e
Confidence 221 1111112223333321122222 4444432 2268889875433 3456778888889999977 6
Q ss_pred EEEEEc-CCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCC---CeEEEEecceEE-EEcCCCC-c-cccc
Q psy3725 568 LCVGYQ-SGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPR---GEFLLVFHSLAA-YVDSQGH-K-SREK 640 (760)
Q Consensus 568 LcVG~~-~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~---~EfLLcy~~~gv-fVD~~G~-r-sR~~ 640 (760)
+.+++. ....++++.............. ......+++..-.. +-++.+-.+-.| +.|.... . ....
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPL-------KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF 255 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSC-------SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccc-------cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence 666665 4577888863222211111000 00111111111111 013333222222 2222221 1 1111
Q ss_pred ceecCC-------------CCcEEEeeC--CeEEEEe-CCeeEEEECcCCcEEEEEec
Q psy3725 641 EIMYPA-------------LPTGASYMD--GQLLIFS-ETHVDVFNAESGDWLQTVNI 682 (760)
Q Consensus 641 ~I~W~~-------------~P~~~ay~~--PYLlvf~-~~~IEVr~i~tg~lVQtI~~ 682 (760)
.+.... ...+++|.. .||++-. +..|.|+++.+++.++++..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence 233222 244566653 3777766 45699999999999998864
No 104
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=94.91 E-value=3.7 Score=41.59 Aligned_cols=122 Identities=9% Similarity=0.100 Sum_probs=70.3
Q ss_pred CeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcc-----cceEEEEeeeeCCCccceEEEEEEec----
Q psy3725 457 KIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPET-----KGCLSFTTGPLTHTRTQHCLALAVKR---- 527 (760)
Q Consensus 457 ~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~et-----Kgc~~f~~g~~~~~~~~~~LcVAvKr---- 527 (760)
.+..+.+.++-+.+++....+..|+++++..-.. .....+... ...+.++. ...+. +|+++...
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~--~~~~~~~~~~~~~~~~~~~~~~--spdg~---~l~~~~~~~~~~ 116 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN--TFHANLSSVPGEVGRSMYSFAI--SPDGK---EVYATVNPTQRL 116 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEESCCSTTEEEECSSCEEE--CTTSS---EEEEEEEEEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE--EEEEEcccccccccccccceEE--CCCCC---EEEEEccccccc
Confidence 5788999988887777766668899999853211 111222211 11111221 12344 55655521
Q ss_pred -----CCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEcCCeEEEEecCCCCce
Q psy3725 528 -----QNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSGFSIYKFSQDNRPI 588 (760)
Q Consensus 528 -----~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~gF~ivdl~~~~~~~ 588 (760)
...-.|.+|.+..++. .+.+..+..|..+.+++|..+|+|.++ .....++|+. ++...
T Consensus 117 ~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~l~~~-~~~i~~~d~~-~~~~~ 179 (349)
T 1jmx_B 117 NDHYVVKPPRLEVFSTADGLE-AKPVRTFPMPRQVYLMRAADDGSLYVA-GPDIYKMDVK-TGKYT 179 (349)
T ss_dssp SSCEEECCCEEEEEEGGGGGG-BCCSEEEECCSSCCCEEECTTSCEEEE-SSSEEEECTT-TCCEE
T ss_pred ccccccCCCeEEEEECCCccc-cceeeeccCCCcccceeECCCCcEEEc-cCcEEEEeCC-CCcee
Confidence 0012788898754331 234456777888888999998887775 4457777775 44433
No 105
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=94.89 E-value=4.7 Score=42.65 Aligned_cols=146 Identities=8% Similarity=0.126 Sum_probs=73.9
Q ss_pred EEEEEEecCCcccceee-----eeEecCCcceEEEEecCc--eEEEEEcCC-eEEEEecCCCCc-----eeecCCCCCcc
Q psy3725 532 QIILYEITRTKTRHKRL-----HEVILPTLAQCIHIFSEG--RLCVGYQSG-FSIYKFSQDNRP-----IPLIHQDNPLV 598 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~-----kE~~lP~~~~sl~~~~~~--~LcVG~~~g-F~ivdl~~~~~~-----~~Ll~~~d~sl 598 (760)
+|.+|.+......+..+ .--.....+.++.|.+++ .|+.|...| ..++|+. ++.. ..+-...++..
T Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~ 277 (447)
T 3dw8_B 199 RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR-ASALCDRHSKLFEEPEDPSN 277 (447)
T ss_dssp EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT-TCSSSCTTCEEECCC-----
T ss_pred eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc-CCccccceeeEeccCCCccc
Confidence 78888875322111110 001235668899999864 677787766 6788886 3332 22222221110
Q ss_pred cccccCCCCceEEEEe-CCCeEEEEecceEEE-EcC--CCCcccccceecCCC----------------CcEEEee--CC
Q psy3725 599 SLLTYSPVDALLAIEL-PRGEFLLVFHSLAAY-VDS--QGHKSREKEIMYPAL----------------PTGASYM--DG 656 (760)
Q Consensus 599 ~f~~~~~~~pl~i~~l-~~~EfLLcy~~~gvf-VD~--~G~rsR~~~I~W~~~----------------P~~~ay~--~P 656 (760)
.-.......++..+.. +++.+|++-+.-.|. -|. .|+..... .-... ...++|. ..
T Consensus 278 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~ 355 (447)
T 3dw8_B 278 RSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETY--QVHEYLRSKLCSLYENDCIFDKFECCWNGSDS 355 (447)
T ss_dssp CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCE--ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS
T ss_pred cccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCcccccee--eccccccccccccccccccccceEEEECCCCC
Confidence 0000001124544444 456777766553333 333 25444332 11111 1124554 45
Q ss_pred eEEEEe-CCeeEEEECcCCcEEEEE
Q psy3725 657 QLLIFS-ETHVDVFNAESGDWLQTV 680 (760)
Q Consensus 657 YLlvf~-~~~IEVr~i~tg~lVQtI 680 (760)
||+.-+ +..|-|+++.+++.++..
T Consensus 356 ~l~s~s~dg~v~iwd~~~~~~~~~~ 380 (447)
T 3dw8_B 356 VVMTGSYNNFFRMFDRNTKRDITLE 380 (447)
T ss_dssp EEEEECSTTEEEEEETTTCCEEEEE
T ss_pred EEEEeccCCEEEEEEcCCCcceeee
Confidence 776665 557999999999988643
No 106
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.75 E-value=8 Score=44.68 Aligned_cols=234 Identities=10% Similarity=0.130 Sum_probs=125.3
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCCCceEEc-CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRYVQIARV-GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE 492 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~~~l~rv-~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~ 492 (760)
...|.|.+.- ++..|+.|+. | +.....+..+ +....|+.+...++.+.|++-++ +..|+++++..-..
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~~~-- 89 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD-DFRIRVFNYNTGEK-- 89 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET-TSEEEEEETTTCCE--
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCcE--
Confidence 4568888742 3446899987 3 2333122222 25578999999999888777655 68999999853211
Q ss_pred cceeecCcc-cceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe-cCCcceEEEEec-Cc-eE
Q psy3725 493 VEWVKIPET-KGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFS-EG-RL 568 (760)
Q Consensus 493 ~~~~kl~et-Kgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~-~~-~L 568 (760)
...+... .....++. ...+. +|+++-. .-.|.+|.+..+. .....+. .+.++.++.|.+ ++ .|
T Consensus 90 --~~~~~~~~~~v~~~~~--s~~~~---~l~~~~~---dg~i~vw~~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l 156 (814)
T 3mkq_A 90 --VVDFEAHPDYIRSIAV--HPTKP---YVLSGSD---DLTVKLWNWENNW---ALEQTFEGHEHFVMCVAFNPKDPSTF 156 (814)
T ss_dssp --EEEEECCSSCEEEEEE--CSSSS---EEEEEET---TSEEEEEEGGGTS---EEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred --EEEEecCCCCEEEEEE--eCCCC---EEEEEcC---CCEEEEEECCCCc---eEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence 1222211 22222222 22333 4555542 2378889875442 1222232 467788999987 43 77
Q ss_pred EEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEe---CCCeEEEEec-ceE-EEEcC-CCCcccccc
Q psy3725 569 CVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIEL---PRGEFLLVFH-SLA-AYVDS-QGHKSREKE 641 (760)
Q Consensus 569 cVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l---~~~EfLLcy~-~~g-vfVD~-~G~rsR~~~ 641 (760)
++|+..| ..++|+.+......+.... ..++..+.. +++.+|++-. +-. .+.|. .|... ..
T Consensus 157 ~~~~~dg~v~vwd~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~ 223 (814)
T 3mkq_A 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQ-----------ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV--AT 223 (814)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEECCC-----------TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE--EE
T ss_pred EEEeCCCeEEEEECCCCcceeEEecCC-----------CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE--EE
Confidence 7787665 6777885222222222111 111111111 1344444332 111 12232 23222 12
Q ss_pred eecCCCC-cEEEee--CCeEEEEeC-CeeEEEECcCCcEEEEEecCC
Q psy3725 642 IMYPALP-TGASYM--DGQLLIFSE-THVDVFNAESGDWLQTVNIRR 684 (760)
Q Consensus 642 I~W~~~P-~~~ay~--~PYLlvf~~-~~IEVr~i~tg~lVQtI~~~~ 684 (760)
+.....+ ..++|. .++|++.+. ..|.|+++.++..++++....
T Consensus 224 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~ 270 (814)
T 3mkq_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC
Confidence 3333333 345554 347777664 679999999999999986543
No 107
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.74 E-value=0.3 Score=55.99 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=52.4
Q ss_pred HhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 76 LLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 76 ~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
.-+++..+++..++-+..++++.+++.+....|.++++.+++..++.+|++.++.|++++...+.
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 518 QAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555666666666678888888999999999999999999999999999999998875444
No 108
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=94.64 E-value=4.4 Score=41.13 Aligned_cols=230 Identities=12% Similarity=0.110 Sum_probs=120.5
Q ss_pred cCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcc-cceEEEEeeeeCCCccceEEEEEEecCCc
Q psy3725 452 VGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPET-KGCLSFTTGPLTHTRTQHCLALAVKRQNS 530 (760)
Q Consensus 452 v~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~et-Kgc~~f~~g~~~~~~~~~~LcVAvKr~~~ 530 (760)
-++...|+.|.+.++.++|++- +.+..|+++++..-.. ...+... ..+..++. ...+. +|+++-. .
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~----~~~~~~h~~~v~~~~~--~~~~~---~l~s~~~---d 95 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSC-SKDSSASVWYSLNGER----LGTLDGHTGTIWSIDV--DCFTK---YCVTGSA---D 95 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEE-ESSSCEEEEETTTCCE----EEEECCCSSCEEEEEE--CTTSS---EEEEEET---T
T ss_pred EEeeceEEEEEEcCCCCEEEEE-eCCCEEEEEeCCCchh----hhhhhhcCCcEEEEEE--cCCCC---EEEEEeC---C
Confidence 3466789999999987766654 4568999999853211 1233322 22233332 22333 4554432 2
Q ss_pred eEEEEEEecCCcccceeeeeEecCCcceEEEEecCc-eEEEEEcC------CeEEEEecCCCCceeecCCC-CCcccccc
Q psy3725 531 SQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG-RLCVGYQS------GFSIYKFSQDNRPIPLIHQD-NPLVSLLT 602 (760)
Q Consensus 531 ~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~-~LcVG~~~------gF~ivdl~~~~~~~~Ll~~~-d~sl~f~~ 602 (760)
-+|.+|.+...+ ....+..+.++.++.|..++ .|++|... ...++|+........+.... .+...+..
T Consensus 96 g~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 171 (369)
T 3zwl_B 96 YSIKLWDVSNGQ----CVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT 171 (369)
T ss_dssp TEEEEEETTTCC----EEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC
T ss_pred CeEEEEECCCCc----EEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC
Confidence 278899875433 34556688999999999876 55555553 47778886322222221111 11111111
Q ss_pred cCCCCceEEEEeC-CCeEEEEe-c-ceEEEEcCCCCcccccceecCC-CCcEEEee--CCeEEEEe-CCeeEEEECcCCc
Q psy3725 603 YSPVDALLAIELP-RGEFLLVF-H-SLAAYVDSQGHKSREKEIMYPA-LPTGASYM--DGQLLIFS-ETHVDVFNAESGD 675 (760)
Q Consensus 603 ~~~~~pl~i~~l~-~~EfLLcy-~-~~gvfVD~~G~rsR~~~I~W~~-~P~~~ay~--~PYLlvf~-~~~IEVr~i~tg~ 675 (760)
.....++..+..+ ++.+|++- . ..-...|..........+.... ...+++|. ..||++.. +..|-|+++.++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 172 HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp CTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc
Confidence 1122244444443 34455432 2 2222334332111112233333 33456664 34666665 5689999999999
Q ss_pred EEEEEecCC-cee--cCCCCCEEEEe
Q psy3725 676 WLQTVNIRR-ALP--LDTRGSLCFSL 698 (760)
Q Consensus 676 lVQtI~~~~-ir~--L~s~G~l~l~s 698 (760)
.++.+.... +.. ...+|..++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (369)
T 3zwl_B 252 VLKKYETDCPLNTAVITPLKEFIILG 277 (369)
T ss_dssp EEEEEECSSCEEEEEECSSSSEEEEE
T ss_pred eeeeecCCCCceeEEecCCCceEEEe
Confidence 999986443 221 23455554443
No 109
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=94.58 E-value=5.2 Score=41.72 Aligned_cols=241 Identities=11% Similarity=0.077 Sum_probs=123.1
Q ss_pred cCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcc-cceEEEEeeeeCCCccceEEEEEEecCCc
Q psy3725 452 VGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPET-KGCLSFTTGPLTHTRTQHCLALAVKRQNS 530 (760)
Q Consensus 452 v~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~et-Kgc~~f~~g~~~~~~~~~~LcVAvKr~~~ 530 (760)
+.....|..+..-++.++|++-+ .+..|+++++............+... ..+..++.... ++. +|+.+-. .
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~---~l~s~~~---d 135 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGAL-DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK-QDN---VLASGGN---N 135 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEE-SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS-STT---BEEEECS---S
T ss_pred EecCCceEEEEECCCCCeEEEEc-cCCeEEEeecccccccccchhhccCCccceEEEEEcCC-CCC---EEEEEcC---C
Confidence 34556899999999888776644 46899999986633211112222221 22222332211 122 3444432 2
Q ss_pred eEEEEEEecCCc------ccceeeeeEecCCcceEEEEecC-c-eEEEEEcCC-eEEEEecCCCCceeecCCCCCccccc
Q psy3725 531 SQIILYEITRTK------TRHKRLHEVILPTLAQCIHIFSE-G-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLL 601 (760)
Q Consensus 531 ~~Vl~ye~~~~k------~~fkk~kE~~lP~~~~sl~~~~~-~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~ 601 (760)
-.|.+|.+...+ ..+...........+.+|.|..+ + .|+.|...| ..++|+. +......+......
T Consensus 136 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~---- 210 (416)
T 2pm9_A 136 GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK-AKKEVIHLSYTSPN---- 210 (416)
T ss_dssp SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT-TTEEEEEECCCCCS----
T ss_pred CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC-CCCcceEEeccccc----
Confidence 268888875443 11111111234677889999976 3 566666554 7788886 33332222111000
Q ss_pred ccCCCCceEEEEeCCC--eEEEE-ecc----eEEEEcC-CC-Cccccccee--cCCCCcEEEeeC---CeEEEEe-CCee
Q psy3725 602 TYSPVDALLAIELPRG--EFLLV-FHS----LAAYVDS-QG-HKSREKEIM--YPALPTGASYMD---GQLLIFS-ETHV 666 (760)
Q Consensus 602 ~~~~~~pl~i~~l~~~--EfLLc-y~~----~gvfVD~-~G-~rsR~~~I~--W~~~P~~~ay~~---PYLlvf~-~~~I 666 (760)
.+...++..+...++ .+|++ .++ .-...|. .| .+.+ .+. -.....+++|.. .||+.-. +..|
T Consensus 211 -~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v 287 (416)
T 2pm9_A 211 -SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ--TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTV 287 (416)
T ss_dssp -SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB--CCCSCCSSCEEEEEECSSCSSCEEEEESSSEE
T ss_pred -cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE--EeecCccCceeEEEeCCCCCCeEEEEeCCCCE
Confidence 001344444444332 34443 322 2222343 23 2222 222 234456777753 4666665 5679
Q ss_pred EEEECcCCcEEEEEecCC--cee--cCCCC-CEEEEecCCccEEEEe
Q psy3725 667 DVFNAESGDWLQTVNIRR--ALP--LDTRG-SLCFSLANDIPYVVYL 708 (760)
Q Consensus 667 EVr~i~tg~lVQtI~~~~--ir~--L~s~G-~l~l~s~~~~~~~~~~ 708 (760)
.|+++.+++.++++.... +.- ...+| .+++....+-.+.+|.
T Consensus 288 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~ 334 (416)
T 2pm9_A 288 LLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQT 334 (416)
T ss_dssp EEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEE
T ss_pred EEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEE
Confidence 999999999999986543 221 22455 5655554444444443
No 110
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=94.47 E-value=5.4 Score=41.44 Aligned_cols=224 Identities=7% Similarity=0.051 Sum_probs=125.1
Q ss_pred cCCCeEEEEEc--C----CC--CCCceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCc--
Q psy3725 431 IPKEQLLVVLA--G----KQ--RYVQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPE-- 500 (760)
Q Consensus 431 ~~~~rllvGTe--~----l~--~~~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~e-- 500 (760)
++++++++++. + ++ ....+.++........|.+.++- .+.+-...+..|.++++....- .....+..
T Consensus 51 ~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~--~~~i~~g~~~ 127 (328)
T 3dsm_A 51 IRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEI--TGYIECPDMD 127 (328)
T ss_dssp EETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEE--EEEEECTTCC
T ss_pred EECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeE--EEEEEcCCcc
Confidence 46778888876 2 12 22233445455778889887764 4444442357899998754321 01122222
Q ss_pred --ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEcCC---
Q psy3725 501 --TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSG--- 575 (760)
Q Consensus 501 --tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~g--- 575 (760)
...-+-+++ .++ .|.|+... ..-+|.+|.+... +..+.+.+...|..|.+.++|++.|++..+
T Consensus 128 ~~~~~p~~i~~---~~~----~lyv~~~~-~~~~v~viD~~t~----~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~ 195 (328)
T 3dsm_A 128 MESGSTEQMVQ---YGK----YVYVNCWS-YQNRILKIDTETD----KVVDELTIGIQPTSLVMDKYNKMWTITDGGYEG 195 (328)
T ss_dssp TTTCBCCCEEE---ETT----EEEEEECT-TCCEEEEEETTTT----EEEEEEECSSCBCCCEECTTSEEEEEBCCBCTT
T ss_pred ccCCCcceEEE---ECC----EEEEEcCC-CCCEEEEEECCCC----eEEEEEEcCCCccceEEcCCCCEEEEECCCccC
Confidence 001111222 222 46666420 1226778875432 345667777778889999888999988754
Q ss_pred ---------eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEEEecceEEE-EcCC-CCcccccceec
Q psy3725 576 ---------FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVFHSLAAY-VDSQ-GHKSREKEIMY 644 (760)
Q Consensus 576 ---------F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~~~gvf-VD~~-G~rsR~~~I~W 644 (760)
..++|.. ++.....+. ......|..+.--+++.+|.+-+. .|| +|.. |+......+.-
T Consensus 196 ~~~~~~~~~v~~id~~-t~~v~~~~~---------~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~ 264 (328)
T 3dsm_A 196 SPYGYEAPSLYRIDAE-TFTVEKQFK---------FKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEF 264 (328)
T ss_dssp CSSCBCCCEEEEEETT-TTEEEEEEE---------CCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCC
T ss_pred CccccCCceEEEEECC-CCeEEEEEe---------cCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecC
Confidence 4444443 232221111 000123444333345677766665 444 4654 34322212222
Q ss_pred -CCCCcEEEee--CCeEEEEe------CCeeEEEECcCCcEEEEEe
Q psy3725 645 -PALPTGASYM--DGQLLIFS------ETHVDVFNAESGDWLQTVN 681 (760)
Q Consensus 645 -~~~P~~~ay~--~PYLlvf~------~~~IEVr~i~tg~lVQtI~ 681 (760)
...|..+++. .-+|++.. .+.|-+++.. |+++++|+
T Consensus 265 ~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 265 RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 3678999986 35888876 5679999998 99999984
No 111
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=94.45 E-value=0.06 Score=59.43 Aligned_cols=101 Identities=17% Similarity=0.345 Sum_probs=58.8
Q ss_pred ceeeeeecccccccccceEEEEEEEe-CcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 282 AYEGYVKVPKTGGVKKGWVRQFVVVC-DFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 282 ~~eG~vkvp~~~~~kkgw~r~~~~l~-~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
..+||+. |.++..+.|+++|++|. ++.|++|....++.. ...+.|.+ +++. ...+... .+.-|+.
T Consensus 7 ~keG~L~--K~g~~~k~Wk~r~fvL~~~~~l~yyk~~~~~~~------~~~i~l~~--~~~~---~~~~~~~-~~~~~~~ 72 (446)
T 4ejn_A 7 VKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVD------QREAPLNN--FSVA---QCQLMKT-ERPRPNT 72 (446)
T ss_dssp EEEEEEE--EEETTTTEEEEEEEEEETTSBEEEESSCC-------------CCCGG--GBCT---TCEEEEE-CSSSTTE
T ss_pred EEEeeEE--eeccccccccceEEEEeeCCEEEEEecCCCCCc------cCcccccC--cccc---ceeecCC-CCCCCce
Confidence 4689985 55667789999999996 889999976654432 12333321 2221 0001111 1223667
Q ss_pred eeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 361 FRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
|.|...... . -..-++.|++..++..|+.+|..+..
T Consensus 73 f~I~~~~~~--~-~~~r~~~~~~~ee~e~W~~ai~~~i~ 108 (446)
T 4ejn_A 73 FIIRCLQWT--T-VIERTFHVETPEEREEWTTAIQTVAD 108 (446)
T ss_dssp EEEEEEETT--E-EEEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred eEEEcCCCc--e-eeeeEEecCCHHHHHHHHHHHHhhhh
Confidence 888532210 0 01126899999999999999987754
No 112
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=94.42 E-value=4.6 Score=40.45 Aligned_cols=254 Identities=10% Similarity=0.167 Sum_probs=129.3
Q ss_pred CCeeEEEEec-CCCeEEEEEcC------CCCC---CceEEc---CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCc
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLAG------KQRY---VQIARV---GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRAL 488 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe~------l~~~---~~l~rv---~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L 488 (760)
...|.|.+.- ++..|+.|.++ +... ..+..+ .....|..+...++.+.+++-+ .+..|+++++..-
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~ 129 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG-EASTLSIWDLAAP 129 (337)
T ss_dssp SSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE-SSSEEEEEECCCC
T ss_pred CCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc-CCCcEEEEECCCC
Confidence 3456666643 33347777772 2221 112221 4567899999999888766654 4689999998543
Q ss_pred cCCCcceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCc
Q psy3725 489 DGDEVEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEG 566 (760)
Q Consensus 489 ~~~~~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~ 566 (760)
... ....+.. ...+..++. ...+. +|+++-. .-.|.+|.+...+ ....+. ....+.++.|.+++
T Consensus 130 ~~~--~~~~~~~~~~~i~~~~~--~~~~~---~l~~~~~---dg~v~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~ 195 (337)
T 1gxr_A 130 TPR--IKAELTSSAPACYALAI--SPDSK---VCFSCCS---DGNIAVWDLHNQT----LVRQFQGHTDGASCIDISNDG 195 (337)
T ss_dssp --E--EEEEEECSSSCEEEEEE--CTTSS---EEEEEET---TSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTS
T ss_pred Ccc--eeeecccCCCceEEEEE--CCCCC---EEEEEeC---CCcEEEEeCCCCc----eeeeeecccCceEEEEECCCC
Confidence 210 0112221 122333332 22333 4555542 1258888875432 233443 35678899998765
Q ss_pred -eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEe-CCCeEEEEe-c-ceEEEEcCCCCcccccc
Q psy3725 567 -RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIEL-PRGEFLLVF-H-SLAAYVDSQGHKSREKE 641 (760)
Q Consensus 567 -~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l-~~~EfLLcy-~-~~gvfVD~~G~rsR~~~ 641 (760)
.|++|...| ..++|+. +......+. ...++..+.. +++.+|++- . ..-...|..+..... .
T Consensus 196 ~~l~~~~~dg~i~~~d~~-~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~ 261 (337)
T 1gxr_A 196 TKLWTGGLDNTVRSWDLR-EGRQLQQHD------------FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-L 261 (337)
T ss_dssp SEEEEEETTSEEEEEETT-TTEEEEEEE------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-E
T ss_pred CEEEEEecCCcEEEEECC-CCceEeeec------------CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-E
Confidence 677777655 5677876 333222111 1122333333 344444432 2 222233433322110 1
Q ss_pred eecCCCCcEEEee--CCeEEEEe-CCeeEEEECcCCcEEEEEecCC-cee--cCCCCCEEEEecCCccE
Q psy3725 642 IMYPALPTGASYM--DGQLLIFS-ETHVDVFNAESGDWLQTVNIRR-ALP--LDTRGSLCFSLANDIPY 704 (760)
Q Consensus 642 I~W~~~P~~~ay~--~PYLlvf~-~~~IEVr~i~tg~lVQtI~~~~-ir~--L~s~G~l~l~s~~~~~~ 704 (760)
..-.....+++|. ..||++.. +..|.|+++.+++.+....... +.- ...+|..++.+..+-.+
T Consensus 262 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeE
Confidence 1123334566665 35777666 4579999999999886654322 221 23455555544433333
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=94.41 E-value=5.5 Score=41.36 Aligned_cols=228 Identities=11% Similarity=0.091 Sum_probs=125.1
Q ss_pred cCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCce
Q psy3725 452 VGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSS 531 (760)
Q Consensus 452 v~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~ 531 (760)
+.....+..+.+-++.+.+++.++.+..|+++++..-.. ...+........++. ...+. +|+++-. ..-
T Consensus 28 ~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~----~~~~~~~~~v~~~~~--spdg~---~l~~~~~--~~~ 96 (391)
T 1l0q_A 28 IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV----IATVPAGSSPQGVAV--SPDGK---QVYVTNM--ASS 96 (391)
T ss_dssp EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE----EEEEECSSSEEEEEE--CTTSS---EEEEEET--TTT
T ss_pred eecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE----EEEEECCCCccceEE--CCCCC---EEEEEEC--CCC
Confidence 334466899999999888777776678999999843211 112221123333332 22334 5655542 223
Q ss_pred EEEEEEecCCcccceeeeeEecCCcceEEEEecCce-EEEEEc--CCeEEEEecCCCCceeecCCCCCcccccccCCCCc
Q psy3725 532 QIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGR-LCVGYQ--SGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDA 608 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~-LcVG~~--~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~p 608 (760)
.|.+|.+..++ ....+..+..+.++.|..+++ |.+... ....++|+. ++.....+.. ...|
T Consensus 97 ~v~v~d~~~~~----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~~~-----------~~~~ 160 (391)
T 1l0q_A 97 TLSVIDTTSNT----VAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINTVSV-----------GRSP 160 (391)
T ss_dssp EEEEEETTTTE----EEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEEC-----------CSSE
T ss_pred EEEEEECCCCe----EEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEEEec-----------CCCc
Confidence 78889875433 345566778889999998765 534433 336666765 3333322221 1223
Q ss_pred eEEEEeCCCeEEE-E-ec-ceEEEEcCCCCcccccceecCCCCcEEEeeC--CeEEEEe----CCeeEEEECcCCcEEEE
Q psy3725 609 LLAIELPRGEFLL-V-FH-SLAAYVDSQGHKSREKEIMYPALPTGASYMD--GQLLIFS----ETHVDVFNAESGDWLQT 679 (760)
Q Consensus 609 l~i~~l~~~EfLL-c-y~-~~gvfVD~~G~rsR~~~I~W~~~P~~~ay~~--PYLlvf~----~~~IEVr~i~tg~lVQt 679 (760)
..+.--.++.+|+ + .. ..-...|...... ...+.-...|..+++.. .+|++.. .+.|-|+++.+++.++.
T Consensus 161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~ 239 (391)
T 1l0q_A 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITAR 239 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCeE-EEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEE
Confidence 2222223444543 2 22 2233345433221 12344456677777764 3777765 57899999999999999
Q ss_pred EecCC-cee--cCCCCC-EEEEecCCccEEEE
Q psy3725 680 VNIRR-ALP--LDTRGS-LCFSLANDIPYVVY 707 (760)
Q Consensus 680 I~~~~-ir~--L~s~G~-l~l~s~~~~~~~~~ 707 (760)
++... +.- +..+|. |+++...+-.+-++
T Consensus 240 ~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 240 IPVGPDPAGIAVTPDGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp EECCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EecCCCccEEEEccCCCEEEEEcCCCCEEEEE
Confidence 86543 221 235665 54554443333333
No 114
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=94.28 E-value=4.7 Score=39.99 Aligned_cols=252 Identities=12% Similarity=0.143 Sum_probs=132.7
Q ss_pred CCeeEEEEecCCCeEEEEEc-C------CCCCCceEEc--CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC
Q psy3725 422 TKKIYQMDYIPKEQLLVVLA-G------KQRYVQIARV--GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE 492 (760)
Q Consensus 422 ~~~i~Caa~~~~~rllvGTe-~------l~~~~~l~rv--~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~ 492 (760)
...|+|.+..+++.|+.|+. | +... ..... .....|..+...++.+.+++-+ .+..++++++.......
T Consensus 18 ~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~~~~~~~~~~ 95 (313)
T 3odt_A 18 DQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDSEKELLLFGG-KDTMINGVPLFATSGED 95 (313)
T ss_dssp SSCEEEEEEEETTEEEEEETTSEEEEEEESSS-EEEEEEEECSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTCCTTSC
T ss_pred CCCcEEEEecCCCEEEEEEcCCcEEEEECCCC-EEEEEeecCCccEEEEEECCCCCEEEEec-CCCeEEEEEeeecCCCC
Confidence 56788888756777999987 3 2232 22222 2457899999999877766654 57899999986654322
Q ss_pred cceeecC-cccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe-cCCcceEEEEec--CceE
Q psy3725 493 VEWVKIP-ETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFS--EGRL 568 (760)
Q Consensus 493 ~~~~kl~-etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~--~~~L 568 (760)
.. ..+. ....+..++. . +. +|+++-. .-.|.+|. .. +....+. ...++.++.|.. ...|
T Consensus 96 ~~-~~~~~~~~~i~~~~~---~-~~---~l~~~~~---d~~i~~~d--~~----~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 96 PL-YTLIGHQGNVCSLSF---Q-DG---VVISGSW---DKTAKVWK--EG----SLVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp C--CEECCCSSCEEEEEE---E-TT---EEEEEET---TSEEEEEE--TT----EEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred cc-cchhhcccCEEEEEe---c-CC---EEEEEeC---CCCEEEEc--CC----cEEEecccCCCceeEEEEccCCCCEE
Confidence 11 1222 1223333333 2 22 4444432 22677887 21 2222333 356677888875 3377
Q ss_pred EEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEe-CCCeEEEEecceEEE-EcC-CCCcccccceec
Q psy3725 569 CVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIEL-PRGEFLLVFHSLAAY-VDS-QGHKSREKEIMY 644 (760)
Q Consensus 569 cVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l-~~~EfLLcy~~~gvf-VD~-~G~rsR~~~I~W 644 (760)
++|...| ..++|.. .....+.. ....++..+.. +++.++.+..+-.|+ .|. .|+..+ .+.-
T Consensus 159 ~~~~~d~~i~i~d~~---~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~--~~~~ 223 (313)
T 3odt_A 159 LTASADKTIKLWQND---KVIKTFSG----------IHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLR--TYEG 223 (313)
T ss_dssp EEEETTSCEEEEETT---EEEEEECS----------SCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEE--EEEC
T ss_pred EEEECCCCEEEEecC---ceEEEEec----------cCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhh--hhhc
Confidence 7777654 5666632 11111110 01223322222 233444444332232 343 343332 2332
Q ss_pred CC-CCcEEEeeCC-eEEEEe-CCeeEEEECcCCcEEEEEecCC--cee--cCCCCCEEEEecCCccEEEEe
Q psy3725 645 PA-LPTGASYMDG-QLLIFS-ETHVDVFNAESGDWLQTVNIRR--ALP--LDTRGSLCFSLANDIPYVVYL 708 (760)
Q Consensus 645 ~~-~P~~~ay~~P-YLlvf~-~~~IEVr~i~tg~lVQtI~~~~--ir~--L~s~G~l~l~s~~~~~~~~~~ 708 (760)
.. ...+++|... +|++.. ++.|.|+++.+++.++++.... +.- .+.+|.++.++.+ -.+.+|.
T Consensus 224 ~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d-g~i~iw~ 293 (313)
T 3odt_A 224 HESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSD-NLVRIFS 293 (313)
T ss_dssp CSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETT-SCEEEEE
T ss_pred CCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCC-CcEEEEe
Confidence 22 3345666543 455544 6689999999999999996654 222 2356665544433 4444443
No 115
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.24 E-value=14 Score=45.29 Aligned_cols=271 Identities=8% Similarity=0.033 Sum_probs=133.3
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCCCceEEc-CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRYVQIARV-GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE 492 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~~~l~rv-~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~ 492 (760)
...|+|.+.- ++..|+.|++ | +.....+..+ ++...|..+.+.++.+.+++-+ .++.|+++++..-..
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~~~~-- 691 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS-ADKKVKIWDSATGKL-- 691 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCE--
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEe-CCCeEEEEECCCCce--
Confidence 4568887743 3445888877 3 2333233333 3467899999999988777655 468999999853210
Q ss_pred cceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeE-ecCCcceEEEEecCc-eEE
Q psy3725 493 VEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEV-ILPTLAQCIHIFSEG-RLC 569 (760)
Q Consensus 493 ~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~-~lP~~~~sl~~~~~~-~Lc 569 (760)
...+.. ......++.....++. +++.+-. .-.|.+|.+..++. ...+ .....+.++.|.+++ .|+
T Consensus 692 --~~~~~~~~~~v~~~~~~~~~~~~---~l~sg~~---d~~v~vwd~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~ 759 (1249)
T 3sfz_A 692 --VHTYDEHSEQVNCCHFTNKSNHL---LLATGSN---DFFLKLWDLNQKEC----RNTMFGHTNSVNHCRFSPDDELLA 759 (1249)
T ss_dssp --EEEEECCSSCEEEEEECSSSSCC---EEEEEET---TSCEEEEETTSSSE----EEEECCCSSCEEEEEECSSTTEEE
T ss_pred --EEEEcCCCCcEEEEEEecCCCce---EEEEEeC---CCeEEEEECCCcch----hheecCCCCCEEEEEEecCCCEEE
Confidence 112221 1122222221111111 3443322 23688898765432 1222 345778899999876 566
Q ss_pred EEEcCC-eEEEEecCCCCce-eecCCCCC-cccccccCCCCceEEEEe-CCCeEEEEe-cceEEEEcC-CCCccccccee
Q psy3725 570 VGYQSG-FSIYKFSQDNRPI-PLIHQDNP-LVSLLTYSPVDALLAIEL-PRGEFLLVF-HSLAAYVDS-QGHKSREKEIM 643 (760)
Q Consensus 570 VG~~~g-F~ivdl~~~~~~~-~Ll~~~d~-sl~f~~~~~~~pl~i~~l-~~~EfLLcy-~~~gvfVD~-~G~rsR~~~I~ 643 (760)
.|+..| ..++|+. ++... .+...... ...........++..+.. +++.++++- +......|. .|.........
T Consensus 760 s~s~dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~ 838 (1249)
T 3sfz_A 760 SCSADGTLRLWDVR-SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG 838 (1249)
T ss_dssp EEESSSEEEEEEGG-GTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECS
T ss_pred EEECCCeEEEEeCC-CCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCC
Confidence 677655 7788886 22221 11110000 000000000001111111 234444332 332233333 33322211112
Q ss_pred cCCCCcEEEeeC--CeEEEEe-CCeeEEEECcCCcEEEEEecCC--cee--cCCCCCEEEEecCCccEEEEe
Q psy3725 644 YPALPTGASYMD--GQLLIFS-ETHVDVFNAESGDWLQTVNIRR--ALP--LDTRGSLCFSLANDIPYVVYL 708 (760)
Q Consensus 644 W~~~P~~~ay~~--PYLlvf~-~~~IEVr~i~tg~lVQtI~~~~--ir~--L~s~G~l~l~s~~~~~~~~~~ 708 (760)
-.+...+++|.. .++++-. +..|.|+++.++..++++.+.. +.- ..++|..++.+..+-.+.++.
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 233445566543 3555554 5579999999999999886544 222 234666665554444444443
No 116
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.18 E-value=4.6 Score=49.58 Aligned_cols=229 Identities=11% Similarity=0.089 Sum_probs=124.4
Q ss_pred CeeEEEEec-CCCeEEEEEc-C------CCCCCceEEc-CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCc
Q psy3725 423 KKIYQMDYI-PKEQLLVVLA-G------KQRYVQIARV-GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEV 493 (760)
Q Consensus 423 ~~i~Caa~~-~~~rllvGTe-~------l~~~~~l~rv-~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~ 493 (760)
..+.|.+.- ++..+++|++ | +.....+... ++...|+.+.+.++.+.++. ++.+..|+++++..-..
T Consensus 962 ~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-~~~dg~i~vwd~~~~~~--- 1037 (1249)
T 3sfz_A 962 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS-SSEDSVIQVWNWQTGDY--- 1037 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEE-ECSSSBEEEEETTTTEE---
T ss_pred CcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEE-EcCCCEEEEEECCCCce---
Confidence 346666643 4556999988 3 2233122222 35567999999998777665 45578999999853211
Q ss_pred ceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCc-eEEEE
Q psy3725 494 EWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEG-RLCVG 571 (760)
Q Consensus 494 ~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~-~LcVG 571 (760)
.........+..++.. .++. ++.+.... +|.+|.+..++. .+.+. ....+.++.|.+++ .|++|
T Consensus 1038 -~~~~~~~~~v~~~~~~--~~~~---l~~~~~dg----~v~vwd~~~~~~----~~~~~~~~~~v~~~~~s~d~~~l~s~ 1103 (1249)
T 3sfz_A 1038 -VFLQAHQETVKDFRLL--QDSR---LLSWSFDG----TVKVWNVITGRI----ERDFTCHQGTVLSCAISSDATKFSST 1103 (1249)
T ss_dssp -ECCBCCSSCEEEEEEC--SSSE---EEEEESSS----EEEEEETTTTCC----CEEEECCSSCCCCEEECSSSSSCEEE
T ss_pred -EEEecCCCcEEEEEEc--CCCc---EEEEECCC----cEEEEECCCCce----eEEEcccCCcEEEEEECCCCCEEEEE
Confidence 0111112223333321 2222 33333322 788999755432 23343 35668889999876 55666
Q ss_pred EcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEe-CCCeEEEEecc---eEEEEcCCCCccccc------
Q psy3725 572 YQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIEL-PRGEFLLVFHS---LAAYVDSQGHKSREK------ 640 (760)
Q Consensus 572 ~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l-~~~EfLLcy~~---~gvfVD~~G~rsR~~------ 640 (760)
...| ..++|+. ++.....+ .+...++..+.. +++.+|++-+. .-+|==..|+..+..
T Consensus 1104 s~d~~v~iwd~~-~~~~~~~l-----------~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1171 (1249)
T 3sfz_A 1104 SADKTAKIWSFD-LLSPLHEL-----------KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE 1171 (1249)
T ss_dssp CCSSCCCEECSS-SSSCSBCC-----------CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC--
T ss_pred cCCCcEEEEECC-Ccceeeee-----------ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccc
Confidence 5543 6677775 22221111 122344444444 35556654432 223322345544321
Q ss_pred --ceecCCCCcEEEeeC--CeEEEEeCCeeEEEECcCCcEEEEEec
Q psy3725 641 --EIMYPALPTGASYMD--GQLLIFSETHVDVFNAESGDWLQTVNI 682 (760)
Q Consensus 641 --~I~W~~~P~~~ay~~--PYLlvf~~~~IEVr~i~tg~lVQtI~~ 682 (760)
.....+...+++|.. .||++. .+.|.|+++.+|+.++++..
T Consensus 1172 ~~~~~~~~~v~~l~fs~dg~~l~s~-~g~v~vwd~~~g~~~~~~~~ 1216 (1249)
T 3sfz_A 1172 EGTATHGGWVTDVCFSPDSKTLVSA-GGYLKWWNVATGDSSQTFYT 1216 (1249)
T ss_dssp -----CCSCCCEEEECTTSSCEEEE-SSSEEEBCSSSCBCCCCCCC
T ss_pred ccccccCceEEEEEECCCCCEEEEC-CCeEEEEECCCCceeeeeec
Confidence 022345566777764 366555 48999999999999888753
No 117
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=94.15 E-value=5.2 Score=40.03 Aligned_cols=257 Identities=11% Similarity=0.112 Sum_probs=132.7
Q ss_pred eeEEEEec-CCCeEEEEEc-C-C-----CCC-CceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcc
Q psy3725 424 KIYQMDYI-PKEQLLVVLA-G-K-----QRY-VQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVE 494 (760)
Q Consensus 424 ~i~Caa~~-~~~rllvGTe-~-l-----~~~-~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~ 494 (760)
.|.+.+.- ++..+++|.. + + ... ..+....+...|+.+.+.++.++++.-+ +..|+++++..-.... .
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--dg~i~iw~~~~~~~~~-~ 87 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKS-P 87 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC--BSEEEEEETTSTTCCS-C
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC--CCeEEEEECCCCCcee-e
Confidence 34555532 4445777765 2 1 111 2333355677899999999888776654 6899999986432211 1
Q ss_pred eeec---CcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEec-CCcceEEEEecCc-eEE
Q psy3725 495 WVKI---PETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVIL-PTLAQCIHIFSEG-RLC 569 (760)
Q Consensus 495 ~~kl---~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~l-P~~~~sl~~~~~~-~Lc 569 (760)
...+ ........++. ...+. +|+++-. .-.|.+|.+...+. .....+.- ...+.++.|.+++ .|+
T Consensus 88 ~~~~~~~~~~~~v~~~~~--~~~~~---~l~~~~~---d~~i~~~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~ 157 (337)
T 1gxr_A 88 VSQLDCLNRDNYIRSCKL--LPDGC---TLIVGGE---ASTLSIWDLAAPTP--RIKAELTSSAPACYALAISPDSKVCF 157 (337)
T ss_dssp SEEEECSCTTSBEEEEEE--CTTSS---EEEEEES---SSEEEEEECCCC----EEEEEEECSSSCEEEEEECTTSSEEE
T ss_pred eecccccCCCCcEEEEEE--cCCCC---EEEEEcC---CCcEEEEECCCCCc--ceeeecccCCCceEEEEECCCCCEEE
Confidence 1111 11222233332 22333 4555542 12788898765431 22233333 4567889998765 677
Q ss_pred EEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeC-CCeEEEE-ecc-eEEEEcC-CCCcccccceec
Q psy3725 570 VGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELP-RGEFLLV-FHS-LAAYVDS-QGHKSREKEIMY 644 (760)
Q Consensus 570 VG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~-~~EfLLc-y~~-~gvfVD~-~G~rsR~~~I~W 644 (760)
+|...| ..++|+. ++.....+. ....++..+... ++.+|++ ..+ .-.+.|. .|+... .+..
T Consensus 158 ~~~~dg~v~~~d~~-~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~ 223 (337)
T 1gxr_A 158 SCCSDGNIAVWDLH-NQTLVRQFQ-----------GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ--QHDF 223 (337)
T ss_dssp EEETTSCEEEEETT-TTEEEEEEC-----------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--EEEC
T ss_pred EEeCCCcEEEEeCC-CCceeeeee-----------cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEe--eecC
Confidence 777654 7778886 333222221 122334334442 3444443 222 2223343 333322 2455
Q ss_pred CCCCcEEEeeC--CeEEEEe-CCeeEEEECcCCcEEEEEecCC-cee--cCCCCCEEEEecCCccEEEE
Q psy3725 645 PALPTGASYMD--GQLLIFS-ETHVDVFNAESGDWLQTVNIRR-ALP--LDTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 645 ~~~P~~~ay~~--PYLlvf~-~~~IEVr~i~tg~lVQtI~~~~-ir~--L~s~G~l~l~s~~~~~~~~~ 707 (760)
+..+.+++|.. .+|++-. +..|.|+++.+++..+...... +.- ...+|..++...++-.+.+|
T Consensus 224 ~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 292 (337)
T 1gxr_A 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEE
Confidence 56666777753 3666555 5679999999998765432221 222 23456655554443444444
No 118
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=93.98 E-value=5.8 Score=39.92 Aligned_cols=196 Identities=17% Similarity=0.225 Sum_probs=97.2
Q ss_pred eEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceee
Q psy3725 469 LLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRL 548 (760)
Q Consensus 469 lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~ 548 (760)
.+++-.+.+..|++++++. .+.......+......+.++.. ..+. +|+++-.. .-.|.+|.++.....++.+
T Consensus 6 ~l~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s--pdg~---~l~~~~~~--~~~v~~~~~~~~~~~~~~~ 77 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNH-EGALTLTQVVDVPGQVQPMVVS--PDKR---YLYVGVRP--EFRVLAYRIAPDDGALTFA 77 (343)
T ss_dssp EEEEEEGGGTEEEEEEECT-TSCEEEEEEEECSSCCCCEEEC--TTSS---EEEEEETT--TTEEEEEEECTTTCCEEEE
T ss_pred EEEEeCCCCCeEEEEEECC-CCcEEEeeeEecCCCCceEEEC--CCCC---EEEEeecC--CCeEEEEEecCCCCceeec
Confidence 3444335568899998853 2210011112222222222221 2233 56666541 2378888886333335666
Q ss_pred eeEecCCcceEEEEecCce-EEEEEc-CC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEEEe--
Q psy3725 549 HEVILPTLAQCIHIFSEGR-LCVGYQ-SG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVF-- 623 (760)
Q Consensus 549 kE~~lP~~~~sl~~~~~~~-LcVG~~-~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy-- 623 (760)
..+..+..+.++.|..+|+ |.++.. .+ ..++++. ++........ ......|.++.--+++.+|++-
T Consensus 78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~~~~~~~--------~~~~~~~~~~~~s~dg~~l~~~~~ 148 (343)
T 1ri6_A 78 AESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGLPVGVVDV--------VEGLDGCHSANISPDNRTLWVPAL 148 (343)
T ss_dssp EEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTEEEEEEEE--------ECCCTTBCCCEECTTSSEEEEEEG
T ss_pred cccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC-CCcccccccc--------ccCCCCceEEEECCCCCEEEEecC
Confidence 7788888899999998875 666664 33 7888884 2221111100 0001112211111234444322
Q ss_pred -cce-EEE-EcCCCCccccc--ceec--CCCCcEEEeeC--CeEEEEe--CCeeEEEECc--CCcE--EEEEe
Q psy3725 624 -HSL-AAY-VDSQGHKSREK--EIMY--PALPTGASYMD--GQLLIFS--ETHVDVFNAE--SGDW--LQTVN 681 (760)
Q Consensus 624 -~~~-gvf-VD~~G~rsR~~--~I~W--~~~P~~~ay~~--PYLlvf~--~~~IEVr~i~--tg~l--VQtI~ 681 (760)
+.. .+| ++..|+..... .+.. ...|..++|.. .||++.. .+.|.|+++. +|++ ++.+.
T Consensus 149 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~ 221 (343)
T 1ri6_A 149 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD 221 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE
T ss_pred CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeecc
Confidence 122 222 22335443222 2222 34677777753 3787775 5689999994 5665 55553
No 119
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=93.96 E-value=5.3 Score=41.93 Aligned_cols=211 Identities=11% Similarity=0.140 Sum_probs=103.6
Q ss_pred CCCCCeeEEEEecCCCeEEEEECC-----CCeEEEEECCCccCCCcc-eeecCcccceEEEEeeeeCCCccceEEEEEEe
Q psy3725 453 GDTKKIYQMDYIPEEQLLVVLAGK-----QRYVRLVPVRALDGDEVE-WVKIPETKGCLSFTTGPLTHTRTQHCLALAVK 526 (760)
Q Consensus 453 ~~~k~V~QI~Vi~e~~lLlvLsgk-----~r~L~l~~L~~L~~~~~~-~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvK 526 (760)
...+.|..+..-|+-.+|+.=++. +..++++....-...... ........++...+. ...+. +|.++..
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--s~d~~---~l~~s~d 114 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAW--VSEKG---ILVASDS 114 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEE--ETTTE---EEEEETT
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEE--cCCCC---EEEEECC
Confidence 355678999999888777765431 245777765332221100 111111222222222 22233 3433322
Q ss_pred cCCceEEEEEEecCCccc-ceeeeeEecCCcceEEEEecCc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCccccccc
Q psy3725 527 RQNSSQIILYEITRTKTR-HKRLHEVILPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTY 603 (760)
Q Consensus 527 r~~~~~Vl~ye~~~~k~~-fkk~kE~~lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~ 603 (760)
. +|.+|.+..++.. ...+....-...+.+|.|.+++ .|+.|...| ..++|+. ++.....+.
T Consensus 115 g----~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~-~~~~~~~~~----------- 178 (357)
T 4g56_B 115 G----AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS-QKAVLKSYN----------- 178 (357)
T ss_dssp S----CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TTEEEEEEC-----------
T ss_pred C----EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEEEc-----------
Confidence 2 6788887544321 1122233446789999999876 566676655 6677886 333322221
Q ss_pred CCCCceEEEEeC-C-CeE-EEEecceEEEE-cC-CCCcccccce-ecCCCCcEEEeeC--CeEEEE--eCCeeEEEECcC
Q psy3725 604 SPVDALLAIELP-R-GEF-LLVFHSLAAYV-DS-QGHKSREKEI-MYPALPTGASYMD--GQLLIF--SETHVDVFNAES 673 (760)
Q Consensus 604 ~~~~pl~i~~l~-~-~Ef-LLcy~~~gvfV-D~-~G~rsR~~~I-~W~~~P~~~ay~~--PYLlvf--~~~~IEVr~i~t 673 (760)
....++..+... + +.+ +-+-.+-.|.+ |. .|+......+ .-...+.+++|.. +++++. .+..|-|+++.+
T Consensus 179 ~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~ 258 (357)
T 4g56_B 179 AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258 (357)
T ss_dssp CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC
Confidence 122334333332 2 223 33333333333 43 4444433222 2234456778763 455544 356799999999
Q ss_pred CcEEEEEecCC
Q psy3725 674 GDWLQTVNIRR 684 (760)
Q Consensus 674 g~lVQtI~~~~ 684 (760)
++.++++.+..
T Consensus 259 ~~~~~~~~~~~ 269 (357)
T 4g56_B 259 PDSAQTSAVHS 269 (357)
T ss_dssp GGGCEEECCCS
T ss_pred CcEeEEEeccc
Confidence 99999985443
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=93.95 E-value=7.4 Score=41.04 Aligned_cols=199 Identities=12% Similarity=0.038 Sum_probs=109.0
Q ss_pred CCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecC-cccceEEEEeeeeCCCccceEEEEEEecCCceEE
Q psy3725 455 TKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIP-ETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQI 533 (760)
Q Consensus 455 ~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~-etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~V 533 (760)
...|..+.+-++ +-+++.++.+..|+++++..... ...+. .......++.. ..+. .++++-.. .-.|
T Consensus 169 ~~~v~~~~~~~~-~~~~~s~~~d~~v~~~d~~~~~~----~~~~~~~~~~~~~~~~~--~~~~---~l~~~~~~--~~~i 236 (433)
T 3bws_A 169 LGFVETISIPEH-NELWVSQMQANAVHVFDLKTLAY----KATVDLTGKWSKILLYD--PIRD---LVYCSNWI--SEDI 236 (433)
T ss_dssp CCEEEEEEEGGG-TEEEEEEGGGTEEEEEETTTCCE----EEEEECSSSSEEEEEEE--TTTT---EEEEEETT--TTEE
T ss_pred CCceeEEEEcCC-CEEEEEECCCCEEEEEECCCceE----EEEEcCCCCCeeEEEEc--CCCC---EEEEEecC--CCcE
Confidence 346888888555 44555565678999999853211 11222 12233333332 2333 45555421 2278
Q ss_pred EEEEecCCcccceeeeeEecCCcceEEEEecCc-eEEEEEc---------CCeEEEEecCCCCceeecCCCCCccccccc
Q psy3725 534 ILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG-RLCVGYQ---------SGFSIYKFSQDNRPIPLIHQDNPLVSLLTY 603 (760)
Q Consensus 534 l~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~-~LcVG~~---------~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~ 603 (760)
.+|.+... +....+.....+.++.|..+| .|.++.. ....++|+. ++.....+..
T Consensus 237 ~~~d~~~~----~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~-~~~~~~~~~~---------- 301 (433)
T 3bws_A 237 SVIDRKTK----LEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD-KEKLIDTIGP---------- 301 (433)
T ss_dssp EEEETTTT----EEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT-TTEEEEEEEE----------
T ss_pred EEEECCCC----cEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC-CCcEEeeccC----------
Confidence 88887543 234556667778899999776 6666663 235567775 3332222210
Q ss_pred CCCCceEEEEeCCCeEEEEe---cceEEEEcCC-CCcccccceecCCCCcEEEeeC--CeEEEEeCC-------------
Q psy3725 604 SPVDALLAIELPRGEFLLVF---HSLAAYVDSQ-GHKSREKEIMYPALPTGASYMD--GQLLIFSET------------- 664 (760)
Q Consensus 604 ~~~~pl~i~~l~~~EfLLcy---~~~gvfVD~~-G~rsR~~~I~W~~~P~~~ay~~--PYLlvf~~~------------- 664 (760)
...|.++.--+++.+|++- +..-...|.. |+.. ..+.-...|..+++.. .+|++....
T Consensus 302 -~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~ 378 (433)
T 3bws_A 302 -PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ--KSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGL 378 (433)
T ss_dssp -EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE--EEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred -CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE--EEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccc
Confidence 0112222222334344322 2233334544 3322 2344556677888874 478777653
Q ss_pred ---eeEEEECcCCcEEEEEecC
Q psy3725 665 ---HVDVFNAESGDWLQTVNIR 683 (760)
Q Consensus 665 ---~IEVr~i~tg~lVQtI~~~ 683 (760)
.|-++++.+++.++.+...
T Consensus 379 ~dg~v~~~d~~~~~~~~~~~~~ 400 (433)
T 3bws_A 379 VLGKVYVIDTTTDTVKEFWEAG 400 (433)
T ss_dssp SCCEEEEEETTTTEEEEEEECS
T ss_pred cceEEEEEECCCCcEEEEecCC
Confidence 8999999999999998653
No 121
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=93.72 E-value=7.8 Score=40.58 Aligned_cols=147 Identities=12% Similarity=0.171 Sum_probs=76.8
Q ss_pred CeeEEEEecCCCeEEEEEc-C------CCCC-----CceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccC
Q psy3725 423 KKIYQMDYIPKEQLLVVLA-G------KQRY-----VQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDG 490 (760)
Q Consensus 423 ~~i~Caa~~~~~rllvGTe-~------l~~~-----~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~ 490 (760)
..|.|.+...+++++.|+. + +... ......+....|..|.+.++-+.|+.- +.+..|+++++..-..
T Consensus 95 ~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sg-s~dg~v~iwd~~~~~~ 173 (357)
T 4g56_B 95 AGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSG-GKDFSVKVWDLSQKAV 173 (357)
T ss_dssp SCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEE-ETTSCEEEEETTTTEE
T ss_pred CCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEE-eCCCeEEEEECCCCcE
Confidence 3477877555667777776 2 2221 122333456789999999988777654 4578999999853211
Q ss_pred CCcceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCc--e
Q psy3725 491 DEVEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG--R 567 (760)
Q Consensus 491 ~~~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~--~ 567 (760)
...+.. +..+...+. ...+. . +++.+-. .-+|.+|.+...+.. ..+....-...+.++.|.+++ .
T Consensus 174 ----~~~~~~h~~~v~~v~~--s~~~~-~-~~~s~~~---dg~v~~wd~~~~~~~-~~~~~~~~~~~v~~v~~sp~~~~~ 241 (357)
T 4g56_B 174 ----LKSYNAHSSEVNCVAA--CPGKD-T-IFLSCGE---DGRILLWDTRKPKPA-TRIDFCASDTIPTSVTWHPEKDDT 241 (357)
T ss_dssp ----EEEECCCSSCEEEEEE--CTTCS-S-CEEEEET---TSCEEECCTTSSSCB-CBCCCTTCCSCEEEEEECTTSTTE
T ss_pred ----EEEEcCCCCCEEEEEE--ccCCC-c-eeeeecc---CCceEEEECCCCcee-eeeeeccccccccchhhhhcccce
Confidence 122221 112222222 22222 1 2332221 116788886543321 111112234567889998642 4
Q ss_pred EEEEEcCC-eEEEEec
Q psy3725 568 LCVGYQSG-FSIYKFS 582 (760)
Q Consensus 568 LcVG~~~g-F~ivdl~ 582 (760)
|++|...+ ..++|+.
T Consensus 242 la~g~~d~~i~~wd~~ 257 (357)
T 4g56_B 242 FACGDETGNVSLVNIK 257 (357)
T ss_dssp EEEEESSSCEEEEESS
T ss_pred EEEeecccceeEEECC
Confidence 66677654 5667774
No 122
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=93.66 E-value=10 Score=41.74 Aligned_cols=143 Identities=13% Similarity=0.212 Sum_probs=80.5
Q ss_pred CCeeEEEEecCCC--eEEEEEc-C------CCCCCceEEcC-CCC---CeeEEEEecC-CCeEEEEECCCCeEEEEECCC
Q psy3725 422 TKKIYQMDYIPKE--QLLVVLA-G------KQRYVQIARVG-DTK---KIYQMDYIPE-EQLLVVLAGKQRYVRLVPVRA 487 (760)
Q Consensus 422 ~~~i~Caa~~~~~--rllvGTe-~------l~~~~~l~rv~-~~k---~V~QI~Vi~e-~~lLlvLsgk~r~L~l~~L~~ 487 (760)
...|.|.+....+ .++.|++ + +.....+..+. ... .|..+.+.++ .+.+++-+ .+..|+++++..
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~ 238 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG-SDRKISCFDGKS 238 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE-TTCCEEEEETTT
T ss_pred CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEe-CCCeEEEEECCC
Confidence 4567777743333 5777776 2 22221222333 334 7999999999 66665544 468999999843
Q ss_pred ccCCCcceeec-----CcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecC-----Ccc
Q psy3725 488 LDGDEVEWVKI-----PETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILP-----TLA 557 (760)
Q Consensus 488 L~~~~~~~~kl-----~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP-----~~~ 557 (760)
-.. ...+ .....+..++.. .+. +|+++-. .-.|.+|.+... +....+..+ ..+
T Consensus 239 ~~~----~~~~~~~~~~~~~~v~~~~~~---~~~---~l~~~~~---d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~ 301 (615)
T 1pgu_A 239 GEF----LKYIEDDQEPVQGGIFALSWL---DSQ---KFATVGA---DATIRVWDVTTS----KCVQKWTLDKQQLGNQQ 301 (615)
T ss_dssp CCE----EEECCBTTBCCCSCEEEEEES---SSS---EEEEEET---TSEEEEEETTTT----EEEEEEECCTTCGGGCE
T ss_pred CCE----eEEecccccccCCceEEEEEc---CCC---EEEEEcC---CCcEEEEECCCC----cEEEEEcCCCCcccCce
Confidence 211 2233 222233333333 333 4554442 126888987543 234455554 566
Q ss_pred eEEEEecCceEEEEEcCC-eEEEEec
Q psy3725 558 QCIHIFSEGRLCVGYQSG-FSIYKFS 582 (760)
Q Consensus 558 ~sl~~~~~~~LcVG~~~g-F~ivdl~ 582 (760)
.++.|..+..|++|...| ..++|+.
T Consensus 302 ~~~~~~~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 302 VGVVATGNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETT
T ss_pred eEEEeCCCCeEEEEECCCCEEEEECC
Confidence 677776555777777655 6666664
No 123
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=93.36 E-value=8.3 Score=39.78 Aligned_cols=230 Identities=12% Similarity=0.166 Sum_probs=122.1
Q ss_pred CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceE
Q psy3725 453 GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQ 532 (760)
Q Consensus 453 ~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~ 532 (760)
++...|+.+..-++.++|+.- +.+..|+++++..-.. ...++...+. ..++.....+. +|+++-. .-.
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~-s~Dg~v~iWd~~~~~~----~~~~~~~~~~-v~~~~~s~~~~---~l~s~~~---d~~ 120 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSA-SQDGKLIIWDSYTTNK----VHAIPLRSSW-VMTCAYAPSGN---YVACGGL---DNI 120 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEE-ETTTEEEEEETTTCCE----EEEEECSSSC-EEEEEECTTSS---EEEEEET---TCE
T ss_pred CCCCceEEEEECCCCCEEEEE-eCCCcEEEEECCCCCc----ceEeecCCcc-EEEEEECCCCC---EEEEEeC---CCe
Confidence 355789999999887776664 4578999998743211 1122211111 12222223333 4444432 236
Q ss_pred EEEEEecCCcccceeeeeEec-CCcceEEEEecCceEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceE
Q psy3725 533 IILYEITRTKTRHKRLHEVIL-PTLAQCIHIFSEGRLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALL 610 (760)
Q Consensus 533 Vl~ye~~~~k~~fkk~kE~~l-P~~~~sl~~~~~~~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~ 610 (760)
|.+|.+.......+..+++.- ...+.++.|.+++.|+.|...+ ..++|+. ++.....+. +...++.
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~-~~~~~~~~~-----------~h~~~v~ 188 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE-TGQQTTTFT-----------GHTGDVM 188 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETT-TTEEEEEEC-----------CCSSCEE
T ss_pred EEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECC-CCcEEEEEc-----------CCCCceE
Confidence 888987543333344445443 5678889999887888887654 6677876 333222111 1223343
Q ss_pred EEEe-CCCeEEEEe--cceEEEEcC-CCCcccccceec-CCCCcEEEeeC--CeEEEEe-CCeeEEEECcCCcEEEEEec
Q psy3725 611 AIEL-PRGEFLLVF--HSLAAYVDS-QGHKSREKEIMY-PALPTGASYMD--GQLLIFS-ETHVDVFNAESGDWLQTVNI 682 (760)
Q Consensus 611 i~~l-~~~EfLLcy--~~~gvfVD~-~G~rsR~~~I~W-~~~P~~~ay~~--PYLlvf~-~~~IEVr~i~tg~lVQtI~~ 682 (760)
.+.. +++.+|++- |..-..-|. .|...+ .+.= .....+++|.. .||+.-+ +..|-|+++.++..+.++..
T Consensus 189 ~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~--~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~ 266 (340)
T 1got_B 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQ--TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCSEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCeeEE--EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc
Confidence 3333 234444432 222233343 232221 1111 12233555543 3666555 45799999999998888765
Q ss_pred CC----cee--cCCCCCEEEEecCCccEEEEe
Q psy3725 683 RR----ALP--LDTRGSLCFSLANDIPYVVYL 708 (760)
Q Consensus 683 ~~----ir~--L~s~G~l~l~s~~~~~~~~~~ 708 (760)
.. +.- .+.+|.+++++.++-.+.+|.
T Consensus 267 ~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCcccceEEEEECCCCCEEEEECCCCeEEEEE
Confidence 43 222 245777777666555554443
No 124
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=93.14 E-value=8.1 Score=39.04 Aligned_cols=147 Identities=15% Similarity=0.188 Sum_probs=84.3
Q ss_pred CCeeEEEEecC----CCeEEEEEc-C------CCCCC-ceEEc-CCCCCeeEEEEec------CCCeEEEEECCCCeEEE
Q psy3725 422 TKKIYQMDYIP----KEQLLVVLA-G------KQRYV-QIARV-GDTKKIYQMDYIP------EEQLLVVLAGKQRYVRL 482 (760)
Q Consensus 422 ~~~i~Caa~~~----~~rllvGTe-~------l~~~~-~l~rv-~~~k~V~QI~Vi~------e~~lLlvLsgk~r~L~l 482 (760)
...|.|.+... +..|+.|+. + +.... .+..+ .....|..+...+ +.+.| +.++.+..|++
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l-~~~~~d~~i~v 143 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEI-VTGSRDGTVKV 143 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEE-EEEETTSCEEE
T ss_pred cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEE-EEEeCCCeEEE
Confidence 44577777432 245888886 2 33332 23333 3556799997764 33444 44556789999
Q ss_pred EECCCccCCCcceeecCc-----ccceEEEEeee--eCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCC
Q psy3725 483 VPVRALDGDEVEWVKIPE-----TKGCLSFTTGP--LTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPT 555 (760)
Q Consensus 483 ~~L~~L~~~~~~~~kl~e-----tKgc~~f~~g~--~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~ 555 (760)
+++..-... ...+.. ...+..++.+. ...+. +|+++-. .-.|.+|.+...+ .......+.
T Consensus 144 wd~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~---d~~i~i~d~~~~~----~~~~~~~~~ 210 (357)
T 3i2n_A 144 WDPRQKDDP---VANMEPVQGENKRDCWTVAFGNAYNQEER---VVCAGYD---NGDIKLFDLRNMA----LRWETNIKN 210 (357)
T ss_dssp ECTTSCSSC---SEEECCCTTSCCCCEEEEEEECCCC-CCC---EEEEEET---TSEEEEEETTTTE----EEEEEECSS
T ss_pred EeCCCCCCc---ceeccccCCCCCCceEEEEEEeccCCCCC---EEEEEcc---CCeEEEEECccCc----eeeecCCCC
Confidence 998653311 112211 12344333322 12233 5555543 2278899876543 234566788
Q ss_pred cceEEEEec---C-ceEEEEEcCC-eEEEEec
Q psy3725 556 LAQCIHIFS---E-GRLCVGYQSG-FSIYKFS 582 (760)
Q Consensus 556 ~~~sl~~~~---~-~~LcVG~~~g-F~ivdl~ 582 (760)
.+.++.|.+ + ..|++|...| ..++|+.
T Consensus 211 ~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 211 GVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp CEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence 999999985 3 3788888665 6678886
No 125
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=92.89 E-value=8.7 Score=38.71 Aligned_cols=208 Identities=8% Similarity=0.009 Sum_probs=106.0
Q ss_pred CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEE
Q psy3725 454 DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQI 533 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~V 533 (760)
....|+.+.+.++.++|++-+ .+..|+++++..-...............+..++... .+. .+|+++-. .-+|
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~---~~l~~~~~---dg~i 81 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITS-WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTD---LQIYVGTV---QGEI 81 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEE-TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSS---EEEEEEET---TSCE
T ss_pred CCCcEEEEEEcCCCCEEEEEc-CCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCC---cEEEEEcC---CCeE
Confidence 446799999999888776654 468999999854321000011112222333333322 121 02444432 2268
Q ss_pred EEEEe-cCCcccceeeeeEecCCcceEEEEecCceEEEEEcCC-eEEEEecCC--------CCceeecCCCCCccccccc
Q psy3725 534 ILYEI-TRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSG-FSIYKFSQD--------NRPIPLIHQDNPLVSLLTY 603 (760)
Q Consensus 534 l~ye~-~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~g-F~ivdl~~~--------~~~~~Ll~~~d~sl~f~~~ 603 (760)
.+|.+ ...+. ..+........+.+|.|.+.+.|+.|...| ..++|+... ......+.
T Consensus 82 ~~wd~~~~~~~--~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----------- 148 (342)
T 1yfq_A 82 LKVDLIGSPSF--QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK----------- 148 (342)
T ss_dssp EEECSSSSSSE--EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-----------
T ss_pred EEEEeccCCce--EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-----------
Confidence 88887 54331 222111145678899999633777777655 566777510 11111110
Q ss_pred CCCCceEEEEeCCCeEEEEecc-eEEEEcCCC--Ccc-cccceecCCCCcEEEeeC---CeEEEEe-CCeeEEEECcCC-
Q psy3725 604 SPVDALLAIELPRGEFLLVFHS-LAAYVDSQG--HKS-REKEIMYPALPTGASYMD---GQLLIFS-ETHVDVFNAESG- 674 (760)
Q Consensus 604 ~~~~pl~i~~l~~~EfLLcy~~-~gvfVD~~G--~rs-R~~~I~W~~~P~~~ay~~---PYLlvf~-~~~IEVr~i~tg- 674 (760)
...++..+...++.++.+..+ .-...|... ... ......-...+.+++|.. .++++-. +..|.|+++.++
T Consensus 149 -~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~ 227 (342)
T 1yfq_A 149 -VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227 (342)
T ss_dssp -SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred -eCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCC
Confidence 122333444444445544433 233334433 211 111222234455667754 4555555 457999999887
Q ss_pred -----cEEEEEecC
Q psy3725 675 -----DWLQTVNIR 683 (760)
Q Consensus 675 -----~lVQtI~~~ 683 (760)
..++++...
T Consensus 228 ~~~~~~~~~~~~~~ 241 (342)
T 1yfq_A 228 DDYNSSKRFAFRCH 241 (342)
T ss_dssp CSTTCTTCEEEECC
T ss_pred cccccccceeeecc
Confidence 777777554
No 126
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=92.84 E-value=8.8 Score=38.62 Aligned_cols=231 Identities=13% Similarity=0.182 Sum_probs=118.6
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCCCceEE-c-CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCC
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRYVQIAR-V-GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGD 491 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~~~l~r-v-~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~ 491 (760)
...|+|.+.- ++..|+.|+. + +... ...+ + ++...|..+...++.++|+.-+ .+..|+++++..-..
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~- 99 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSAS-DDKTLKIWDVSSGKC- 99 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCE-
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc-ccchhhccCCCceEEEEEcCCCCEEEEEC-CCCEEEEEECCCCcE-
Confidence 5678888753 3445888876 3 2222 3333 2 3456799999999887766654 578999999853211
Q ss_pred CcceeecCccc-ceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEec-CCcceEEEEecCc-eE
Q psy3725 492 EVEWVKIPETK-GCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVIL-PTLAQCIHIFSEG-RL 568 (760)
Q Consensus 492 ~~~~~kl~etK-gc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~l-P~~~~sl~~~~~~-~L 568 (760)
...+.... ....++ ....+. +|+.+-. .-+|.+|.+...+ ....+.. ..++.++.|..++ .|
T Consensus 100 ---~~~~~~~~~~v~~~~--~~~~~~---~l~s~~~---d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l 164 (312)
T 4ery_A 100 ---LKTLKGHSNYVFCCN--FNPQSN---LIVSGSF---DESVRIWDVKTGK----CLKTLPAHSDPVSAVHFNRDGSLI 164 (312)
T ss_dssp ---EEEEECCSSCEEEEE--ECSSSS---EEEEEET---TSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEE
T ss_pred ---EEEEcCCCCCEEEEE--EcCCCC---EEEEEeC---CCcEEEEECCCCE----EEEEecCCCCcEEEEEEcCCCCEE
Confidence 11222111 122222 222233 4444432 2268889875433 2334443 4678889998765 56
Q ss_pred EEEEcCC-eEEEEecCCCCce-eecCCCCCcccccccCCCCceEEEEe-CCCeEEEEe--cceEEEEcC-CCCcccccce
Q psy3725 569 CVGYQSG-FSIYKFSQDNRPI-PLIHQDNPLVSLLTYSPVDALLAIEL-PRGEFLLVF--HSLAAYVDS-QGHKSREKEI 642 (760)
Q Consensus 569 cVG~~~g-F~ivdl~~~~~~~-~Ll~~~d~sl~f~~~~~~~pl~i~~l-~~~EfLLcy--~~~gvfVD~-~G~rsR~~~I 642 (760)
+.|...| ..++|+. ++... .+.... ..++..+.. +++.+|++- |..-.+.|. .|+..+. +
T Consensus 165 ~~~~~d~~i~~wd~~-~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~ 230 (312)
T 4ery_A 165 VSSSYDGLCRIWDTA-SGQCLKTLIDDD-----------NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--Y 230 (312)
T ss_dssp EEEETTSCEEEEETT-TCCEEEEECCSS-----------CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE--E
T ss_pred EEEeCCCcEEEEECC-CCceeeEEeccC-----------CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE--E
Confidence 6676655 6677886 33322 222211 123333333 234444432 222222232 2322211 1
Q ss_pred ecCC---CCcEEEee---CCeEEEEe-CCeeEEEECcCCcEEEEEecCC
Q psy3725 643 MYPA---LPTGASYM---DGQLLIFS-ETHVDVFNAESGDWLQTVNIRR 684 (760)
Q Consensus 643 ~W~~---~P~~~ay~---~PYLlvf~-~~~IEVr~i~tg~lVQtI~~~~ 684 (760)
.-.. ......+. ..||+.-+ ++.|-|+++.++++++++.+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~ 279 (312)
T 4ery_A 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 279 (312)
T ss_dssp CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS
T ss_pred EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC
Confidence 1000 11112222 23555544 4579999999999999986543
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=92.84 E-value=15 Score=41.35 Aligned_cols=214 Identities=12% Similarity=0.084 Sum_probs=111.8
Q ss_pred CeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCccccee
Q psy3725 468 QLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKR 547 (760)
Q Consensus 468 ~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk 547 (760)
+.+++....+..|.+++.....- ...++.-...|..++ ...+. +|.++-. . -+|.+|.+... ..+.
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~----~~~i~~g~~~~~v~~--spdg~---~l~v~~~-d--~~V~v~D~~~~--t~~~ 214 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKI----VKVIDTGYAVHISRM--SASGR---YLLVIGR-D--ARIDMIDLWAK--EPTK 214 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCE----EEEEECSTTEEEEEE--CTTSC---EEEEEET-T--SEEEEEETTSS--SCEE
T ss_pred CEEEEEEcCCCeEEEEECCCceE----EEEEecCcccceEEE--CCCCC---EEEEECC-C--CeEEEEECcCC--CCcE
Confidence 33444444456777776643211 111211112443332 23344 5666653 2 36888887311 1345
Q ss_pred eeeEecCCcceEEEEec----Cc-eEEEEE--cCCeEEEEecCCCCceeecCCCC---CcccccccCCCCceEEEEeC-C
Q psy3725 548 LHEVILPTLAQCIHIFS----EG-RLCVGY--QSGFSIYKFSQDNRPIPLIHQDN---PLVSLLTYSPVDALLAIELP-R 616 (760)
Q Consensus 548 ~kE~~lP~~~~sl~~~~----~~-~LcVG~--~~gF~ivdl~~~~~~~~Ll~~~d---~sl~f~~~~~~~pl~i~~l~-~ 616 (760)
..++.....+.+|.|.. +| .|.|+. ...+.++|.. ++++...+.... ....|.. ...+.++.--. .
T Consensus 215 ~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~-t~~~~~~i~~~g~~~~~~~~~~--~~~v~~i~~s~~~ 291 (543)
T 1nir_A 215 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE-TLEPKQIVSTRGMTVDTQTYHP--EPRVAAIIASHEH 291 (543)
T ss_dssp EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT-TCCEEEEEECCEECSSSCCEES--CCCEEEEEECSSS
T ss_pred EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc-ccccceeecccCcccCcccccc--CCceEEEEECCCC
Confidence 67788888889999997 66 677776 3568888876 454443332110 0001100 11222333222 3
Q ss_pred CeEEEEec--ceEEEEcCC-CCcccccceecCCCCcEEEeeCC--eEEEEe--CCeeEEEECcCCcEEEEEecC------
Q psy3725 617 GEFLLVFH--SLAAYVDSQ-GHKSREKEIMYPALPTGASYMDG--QLLIFS--ETHVDVFNAESGDWLQTVNIR------ 683 (760)
Q Consensus 617 ~EfLLcy~--~~gvfVD~~-G~rsR~~~I~W~~~P~~~ay~~P--YLlvf~--~~~IEVr~i~tg~lVQtI~~~------ 683 (760)
.+++.+.. ..-..+|.. ++......|.=...|..++|... |+++.. .+.|-|+++.+|+++++++.-
T Consensus 292 ~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g 371 (543)
T 1nir_A 292 PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 371 (543)
T ss_dssp SEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCT
T ss_pred CEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCC
Confidence 34444332 222335542 22222123444556778888654 888765 579999999999999999642
Q ss_pred -CceecCCC-CCEEEEe
Q psy3725 684 -RALPLDTR-GSLCFSL 698 (760)
Q Consensus 684 -~ir~L~s~-G~l~l~s 698 (760)
.+...+++ |.+++.+
T Consensus 372 ~g~~~~~p~~g~~~~s~ 388 (543)
T 1nir_A 372 RGANFVHPKYGPVWSTS 388 (543)
T ss_dssp TCEEEEETTTEEEEEEE
T ss_pred CCcccCCCCCccEEEec
Confidence 22233344 6666554
No 128
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=92.79 E-value=12 Score=40.06 Aligned_cols=147 Identities=10% Similarity=0.096 Sum_probs=77.9
Q ss_pred CCeeEEEEec--CCCeEEEEEc-C------CCCC--CceEE-cCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCcc
Q psy3725 422 TKKIYQMDYI--PKEQLLVVLA-G------KQRY--VQIAR-VGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALD 489 (760)
Q Consensus 422 ~~~i~Caa~~--~~~rllvGTe-~------l~~~--~~l~r-v~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~ 489 (760)
-..|+|.+.- ++..|+.|+. | +... ..+.+ .++...|+.|...|..+-+|+-++.+..|+++++..
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~-- 196 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-- 196 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS--
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC--
Confidence 3468998831 2345889987 2 2222 12222 245678999999985543444456678999999842
Q ss_pred CCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCc--
Q psy3725 490 GDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEG-- 566 (760)
Q Consensus 490 ~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~-- 566 (760)
.......-.........++.....+. +|+++-. .-.|.+|.+.. +. +..+. ....+.+|.|..++
T Consensus 197 -~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~g~~---dg~i~~wd~~~-~~----~~~~~~h~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 197 -NILRVFASSDTINIWFCSLDVSASSR---MVVTGDN---VGNVILLNMDG-KE----LWNLRMHKKKVTHVALNPCCDW 264 (435)
T ss_dssp -CEEEEEECCSSCSCCCCCEEEETTTT---EEEEECS---SSBEEEEESSS-CB----CCCSBCCSSCEEEEEECTTCSS
T ss_pred -CceeEEeccCCCCccEEEEEECCCCC---EEEEEeC---CCcEeeeccCc-ce----eEEEecccceEEeeeecCCCce
Confidence 11111111111111111111222333 4555432 22678888642 21 11222 25678899998654
Q ss_pred eEEEEEcCC-eEEEEec
Q psy3725 567 RLCVGYQSG-FSIYKFS 582 (760)
Q Consensus 567 ~LcVG~~~g-F~ivdl~ 582 (760)
.|+.|...+ ..++|+.
T Consensus 265 ~~~s~s~d~~v~iwd~~ 281 (435)
T 4e54_B 265 FLATASVDQTVKIWDLR 281 (435)
T ss_dssp EEEEEETTSBCCEEETT
T ss_pred EEEEecCcceeeEEecc
Confidence 455666544 6688886
No 129
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=92.79 E-value=1.3 Score=41.77 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=57.7
Q ss_pred eeeccccccc-ccce-EEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceeeee
Q psy3725 286 YVKVPKTGGV-KKGW-VRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRI 363 (760)
Q Consensus 286 ~vkvp~~~~~-kkgw-~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~i 363 (760)
.+.||.+++. ++|- +|-++-..|-=|+.+-..-.+. .....+-..++|.. ..|+.... ..+|+.|.|
T Consensus 19 l~ev~d~~K~~~kg~qqR~~FLFND~LL~TK~~~kkk~-~~~Y~vr~~~~L~g--m~V~~~e~--------e~~p~~~~l 87 (140)
T 3qwm_A 19 LFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKKN-SVTYSFRQSFSLYG--MQVLLFEN--------QYYPNGIRL 87 (140)
T ss_dssp EEECSCTTSCCCTTTTEEEEEEESSCEEEEECCC---C-CCCCCCEEEECCTT--EEEEEECC--------SSCTTEEEE
T ss_pred eeeeccCcccccccccceEEEEecchhhheeecccCCC-CCceEEEEEeeecc--eEEEcccC--------CCCceEEEE
Confidence 3456666663 4566 5555555665333332221111 12223344555522 33332221 148999999
Q ss_pred ecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 364 TTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 364 t~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
...+.|+- ....++|-|+|..||.+|++.|.++..
T Consensus 88 ~s~~~G~~-~k~~i~~~A~s~~ER~rwi~dL~esI~ 122 (140)
T 3qwm_A 88 TSSVPGAD-IKVLINFNAPNPQDRKKFTDDLRESIA 122 (140)
T ss_dssp EECCTTSC-CEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EecCCCCc-ceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 76543321 246799999999999999999988755
No 130
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=92.62 E-value=13 Score=39.96 Aligned_cols=220 Identities=9% Similarity=0.040 Sum_probs=114.0
Q ss_pred CeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecC---cccceEEEEeeeeCCCccceEEEEEEecCCceEE
Q psy3725 457 KIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIP---ETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQI 533 (760)
Q Consensus 457 ~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~---etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~V 533 (760)
.|..+.+-++.+.|++.++.+..|+++++..-.+.. ...+. ....+..++. ...+. +|+++-. .-.|
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~v~~~~~--sp~~~---~l~~~~~---~g~v 173 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV--LKLRKRFCFSKRPNAISI--AEDDT---TVIIADK---FGDV 173 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC--EEEEEEEECSSCEEEEEE--CTTSS---EEEEEET---TSEE
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce--eeeeecccCCCCceEEEE--cCCCC---EEEEEeC---CCcE
Confidence 599999999999888888778899999985211111 11111 1123333332 22333 5666643 2367
Q ss_pred EEEEecCCcccceeeeeE-ecCCcceEEEEecC---c-eEEEEEcCC-eEEEEecCCCCce-eecCCCCCcccccccCCC
Q psy3725 534 ILYEITRTKTRHKRLHEV-ILPTLAQCIHIFSE---G-RLCVGYQSG-FSIYKFSQDNRPI-PLIHQDNPLVSLLTYSPV 606 (760)
Q Consensus 534 l~ye~~~~k~~fkk~kE~-~lP~~~~sl~~~~~---~-~LcVG~~~g-F~ivdl~~~~~~~-~Ll~~~d~sl~f~~~~~~ 606 (760)
+.|.+...+........+ .-...+.+|.|.++ + .|+.|...+ -.++|+. ++... .++. +..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~-----------~h~ 241 (450)
T 2vdu_B 174 YSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP-QCFIVDKWLF-----------GHK 241 (450)
T ss_dssp EEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES-CTTCEEEECC-----------CCS
T ss_pred EEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC-CCceeeeeec-----------CCC
Confidence 788764332110011111 23567889999987 6 455566543 6677886 33322 2221 112
Q ss_pred CceEEEEeCCCeEEEEe--cceEEEEcC-CCCcccccc-------e-----------------ecCCCCcEEEee--CCe
Q psy3725 607 DALLAIELPRGEFLLVF--HSLAAYVDS-QGHKSREKE-------I-----------------MYPALPTGASYM--DGQ 657 (760)
Q Consensus 607 ~pl~i~~l~~~EfLLcy--~~~gvfVD~-~G~rsR~~~-------I-----------------~W~~~P~~~ay~--~PY 657 (760)
.++..+..+++.+|+.- |..-.+-|. .|+..+... + .+......+++. ..|
T Consensus 242 ~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 321 (450)
T 2vdu_B 242 HFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF 321 (450)
T ss_dssp SCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred CceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence 23322222233444322 222222332 344322111 0 223334456665 458
Q ss_pred EEEEe--CCeeEEEEC--cCC---cEEEEEecCC-cee-cCCCCCEEEEe
Q psy3725 658 LLIFS--ETHVDVFNA--ESG---DWLQTVNIRR-ALP-LDTRGSLCFSL 698 (760)
Q Consensus 658 Llvf~--~~~IEVr~i--~tg---~lVQtI~~~~-ir~-L~s~G~l~l~s 698 (760)
|++.. .+.|-|+++ .++ ..+|++.+.. +.- ..+.+.++++.
T Consensus 322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~ 371 (450)
T 2vdu_B 322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTL 371 (450)
T ss_dssp EEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEE
T ss_pred EEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEE
Confidence 88876 678999999 677 8888887652 222 22334555553
No 131
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=92.54 E-value=10 Score=38.63 Aligned_cols=229 Identities=12% Similarity=0.081 Sum_probs=118.8
Q ss_pred CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcc-cceEEEEeeeeCCCccceEEEEEEecCCceE
Q psy3725 454 DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPET-KGCLSFTTGPLTHTRTQHCLALAVKRQNSSQ 532 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~et-Kgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~ 532 (760)
+..+|+.+.+-++.++|++ ++.+..|+++++..-... ....+... ..+..++. ...+. +|+++-. .-.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~-~~~d~~v~i~~~~~~~~~--~~~~~~~h~~~v~~~~~--~~~~~---~l~~~~~---dg~ 75 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAI-CPNNHEVHIYEKSGNKWV--QVHELKEHNGQVTGVDW--APDSN---RIVTCGT---DRN 75 (372)
T ss_dssp CSSCCCEEEECTTSSEEEE-ECSSSEEEEEEEETTEEE--EEEEEECCSSCEEEEEE--ETTTT---EEEEEET---TSC
T ss_pred cCCCeEEEEECCCCCEEEE-EeCCCEEEEEeCCCCcEE--eeeeecCCCCcccEEEE--eCCCC---EEEEEcC---CCe
Confidence 5578999999998777655 445789999987432100 11222221 22233332 22333 4555542 126
Q ss_pred EEEEEecCCcccceeeeeEecCCcceEEEEecCc-eEEEEEcCC-eEEEEecCCCCc----eeecCCCCCcccccccCCC
Q psy3725 533 IILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFSQDNRP----IPLIHQDNPLVSLLTYSPV 606 (760)
Q Consensus 533 Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~~~~~~----~~Ll~~~d~sl~f~~~~~~ 606 (760)
|.+|.+...+. ...+.-......+.++.|..++ .|++|...| ..++|+.. ... ..+.. ...
T Consensus 76 i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~-----------~~~ 142 (372)
T 1k8k_C 76 AYVWTLKGRTW-KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ-ENDWWVCKHIKK-----------PIR 142 (372)
T ss_dssp EEEEEEETTEE-EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET-TTTEEEEEEECT-----------TCC
T ss_pred EEEEECCCCee-eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecC-CCcceeeeeeec-----------ccC
Confidence 78888754431 1112223356788999999765 677777655 67788862 221 11111 112
Q ss_pred CceEEEEe-CCCeEEEEe--cceEEEEcCCC-------------C--cccccceec---CCCCcEEEeeC--CeEEEEeC
Q psy3725 607 DALLAIEL-PRGEFLLVF--HSLAAYVDSQG-------------H--KSREKEIMY---PALPTGASYMD--GQLLIFSE 663 (760)
Q Consensus 607 ~pl~i~~l-~~~EfLLcy--~~~gvfVD~~G-------------~--rsR~~~I~W---~~~P~~~ay~~--PYLlvf~~ 663 (760)
.++..+.. +++.+|++- |..-...|... . +.......+ .+...+++|.. .||++-..
T Consensus 143 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 222 (372)
T 1k8k_C 143 STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH 222 (372)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET
T ss_pred CCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC
Confidence 33333333 234444432 22223334210 0 011111222 22344566643 37776664
Q ss_pred -CeeEEEECcCCcEEEEEecCC--ceec--CCCCCEEEEecCCccEEEE
Q psy3725 664 -THVDVFNAESGDWLQTVNIRR--ALPL--DTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 664 -~~IEVr~i~tg~lVQtI~~~~--ir~L--~s~G~l~l~s~~~~~~~~~ 707 (760)
+.|-|+++.+++.++++.... +.-+ ..+|.+++++.+ -.+.+|
T Consensus 223 d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~ 270 (372)
T 1k8k_C 223 DSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHD-CFPVLF 270 (372)
T ss_dssp TTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETT-SSCEEE
T ss_pred CCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeC-CeEEEE
Confidence 579999999999999997654 3222 246666655533 333333
No 132
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=91.93 E-value=15 Score=39.16 Aligned_cols=246 Identities=10% Similarity=0.154 Sum_probs=130.0
Q ss_pred eEEEEecCCCeEEEEEc-C------CCCCCceEEcC-CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCccee
Q psy3725 425 IYQMDYIPKEQLLVVLA-G------KQRYVQIARVG-DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWV 496 (760)
Q Consensus 425 i~Caa~~~~~rllvGTe-~------l~~~~~l~rv~-~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~ 496 (760)
+.|.. ++++.|+.|+. + +.....+..+. ....|..+..- .++ ++.++.+..|+++++..-.. ..
T Consensus 122 ~~~~~-~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~-l~s~~~dg~i~vwd~~~~~~----~~ 193 (445)
T 2ovr_B 122 ITCLQ-FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNI-IISGSTDRTLKVWNAETGEC----IH 193 (445)
T ss_dssp EEEEE-EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTE-EEEEETTSCEEEEETTTTEE----EE
T ss_pred EEEEE-EcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCE-EEEEeCCCeEEEEECCcCcE----EE
Confidence 45655 57888999987 2 33332223332 45678888876 344 44455678999999854211 12
Q ss_pred ecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCceEEEEEcC
Q psy3725 497 KIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEGRLCVGYQS 574 (760)
Q Consensus 497 kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~~LcVG~~~ 574 (760)
.+.. ...+..++. . +. .|+++-. .-+|.+|.+...+. ...+. ...++.++.|-++ .|++|...
T Consensus 194 ~~~~h~~~v~~~~~---~-~~---~l~s~s~---dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~~~~-~l~~~~~d 258 (445)
T 2ovr_B 194 TLYGHTSTVRCMHL---H-EK---RVVSGSR---DATLRVWDIETGQC----LHVLMGHVAAVRCVQYDGR-RVVSGAYD 258 (445)
T ss_dssp EECCCSSCEEEEEE---E-TT---EEEEEET---TSEEEEEESSSCCE----EEEEECCSSCEEEEEECSS-CEEEEETT
T ss_pred EECCCCCcEEEEEe---c-CC---EEEEEeC---CCEEEEEECCCCcE----EEEEcCCcccEEEEEECCC-EEEEEcCC
Confidence 2221 122222222 1 22 3444432 23788898765432 22332 3567888998544 88888876
Q ss_pred C-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEE-Ee-cceEEEEcC-CCCcccccceecCCCCcE
Q psy3725 575 G-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLL-VF-HSLAAYVDS-QGHKSREKEIMYPALPTG 650 (760)
Q Consensus 575 g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLL-cy-~~~gvfVD~-~G~rsR~~~I~W~~~P~~ 650 (760)
| ..++|+. ++....-+. ....++..+.. ++.+|+ +. |..-...|. .|+...... .-.....+
T Consensus 259 g~i~iwd~~-~~~~~~~~~-----------~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~ 324 (445)
T 2ovr_B 259 FMVKVWDPE-TETCLHTLQ-----------GHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSG 324 (445)
T ss_dssp SCEEEEEGG-GTEEEEEEC-----------CCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEEC-CCCSCEEE
T ss_pred CEEEEEECC-CCcEeEEec-----------CCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEc-CCcccEEE
Confidence 5 6777876 222221111 12234444444 344443 32 222222333 444332211 11223345
Q ss_pred EEeeCCeEEEEe-CCeeEEEECcCCcEEEEEecCC-----ceecCCCCCEEEEecCCccEEEE
Q psy3725 651 ASYMDGQLLIFS-ETHVDVFNAESGDWLQTVNIRR-----ALPLDTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 651 ~ay~~PYLlvf~-~~~IEVr~i~tg~lVQtI~~~~-----ir~L~s~G~l~l~s~~~~~~~~~ 707 (760)
+++...+|++-. +..|-|+++.+++.++++.... +.-+.-+|..++.+.++-.+.+|
T Consensus 325 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iw 387 (445)
T 2ovr_B 325 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEE
T ss_pred EEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEE
Confidence 667777877776 5579999999999999996522 33333345555554444444444
No 133
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.91 E-value=2.6 Score=39.57 Aligned_cols=94 Identities=18% Similarity=0.300 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--cCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhh-------HH---HHHHHH
Q psy3725 20 ARSYLQALTTKTTQELEYLKHA--SSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNL-------QS---SLNSEI 87 (760)
Q Consensus 20 ar~ylq~la~k~~~ele~lr~~--~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~l-------qs---al~~Ei 87 (760)
...||+.+|.-+-+-+..++.. ++ .-=..++.-++-||+ |. .|..++
T Consensus 26 ~ee~L~~vA~~vd~km~ei~~~~~~~---------------------~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l 84 (138)
T 3hnw_A 26 SEEYLQRVASYINNKITEFNKEESYR---------------------RMSAELRTDMMYLNIADDYFKAKKMADSLSLDI 84 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCHHHH---------------------TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCC---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999954 22 001234444444443 32 233333
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 88 QAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 88 ~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
. ...+|+...+..+++++-++.++++.+.+|.+|+..|.+++..|+.
T Consensus 85 ~---~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 85 E---NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3456777788888888888888888888888888777777766653
No 134
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=91.81 E-value=14 Score=38.45 Aligned_cols=234 Identities=9% Similarity=0.124 Sum_probs=118.8
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCC----CCceEEcC-CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCc
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQR----YVQIARVG-DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRAL 488 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~----~~~l~rv~-~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L 488 (760)
...|+|.+.- ++..|+.|++ + +.. ...+..+. ....|..|...++.+-+++.++.+..|+++++..-
T Consensus 67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 146 (416)
T 2pm9_A 67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC 146 (416)
T ss_dssp SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred CCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence 3457777742 3445888876 2 332 11333333 45679999999984444445566789999998654
Q ss_pred cCCCc--ceeec---C-cccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEec-------CC
Q psy3725 489 DGDEV--EWVKI---P-ETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVIL-------PT 555 (760)
Q Consensus 489 ~~~~~--~~~kl---~-etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~l-------P~ 555 (760)
..... ....+ . ....+..++.... ++. +|+++-. .-.|.+|.+...+ ....+.. ..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~---~l~~~~~---dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~ 215 (416)
T 2pm9_A 147 TESPSNYTPLTPGQSMSSVDEVISLAWNQS-LAH---VFASAGS---SNFASIWDLKAKK----EVIHLSYTSPNSGIKQ 215 (416)
T ss_dssp SSCTTTCCCBCCCCSCCSSCCCCEEEECSS-CTT---EEEEESS---SSCEEEEETTTTE----EEEEECCCCCSSCCCC
T ss_pred ccccccccccccccccCCCCCeeEEEeCCC-CCc---EEEEEcC---CCCEEEEECCCCC----cceEEeccccccccCC
Confidence 31000 01111 1 1122222222111 122 3444322 2268889875433 3344444 46
Q ss_pred cceEEEEecCc--eEEEEEcC----CeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeC--CCeEEEEec--c
Q psy3725 556 LAQCIHIFSEG--RLCVGYQS----GFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELP--RGEFLLVFH--S 625 (760)
Q Consensus 556 ~~~sl~~~~~~--~LcVG~~~----gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~--~~EfLLcy~--~ 625 (760)
.+.++.|.+++ .|++|... ...++|+.....+...+. .....++..+..+ ++.+|++-+ .
T Consensus 216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~----------~~~~~~v~~~~~s~~~~~~l~s~~~dg 285 (416)
T 2pm9_A 216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN----------QGHQKGILSLDWCHQDEHLLLSSGRDN 285 (416)
T ss_dssp CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC----------SCCSSCEEEEEECSSCSSCEEEEESSS
T ss_pred ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee----------cCccCceeEEEeCCCCCCeEEEEeCCC
Confidence 78899999875 57778776 477888862112221111 0122334333332 345554332 2
Q ss_pred eEEEEcC-CCCcccccceec-CCCCcEEEeeC--C-eEEEEe-CCeeEEEECcCCcEEE
Q psy3725 626 LAAYVDS-QGHKSREKEIMY-PALPTGASYMD--G-QLLIFS-ETHVDVFNAESGDWLQ 678 (760)
Q Consensus 626 ~gvfVD~-~G~rsR~~~I~W-~~~P~~~ay~~--P-YLlvf~-~~~IEVr~i~tg~lVQ 678 (760)
.-.+-|. .|+... .+.- .....+++|.. | +|+.-. ++.|-|+++.++...+
T Consensus 286 ~v~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 286 TVLLWNPESAEQLS--QFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp EEEEECSSSCCEEE--EEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred CEEEeeCCCCccce--eecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 2223343 333322 1222 23344666664 3 444333 4679999998876444
No 135
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=91.70 E-value=15 Score=38.78 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=83.5
Q ss_pred CCeeEEEEecC--CCeEEEEEc-C------CCC---C---CceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECC
Q psy3725 422 TKKIYQMDYIP--KEQLLVVLA-G------KQR---Y---VQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVR 486 (760)
Q Consensus 422 ~~~i~Caa~~~--~~rllvGTe-~------l~~---~---~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~ 486 (760)
...|+|.+... +..|+.|++ + +.. . ...........|..|.+.++.+.|++- +.+..|+++++.
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~dg~i~vwd~~ 141 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVS-SKDGQIIVLKVN 141 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEE-ETTSEEEEEEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEE-eCCCEEEEEEec
Confidence 45788887533 345888876 2 111 1 112333456789999999987776654 457899999884
Q ss_pred Cc-cCCCcc--------eeecCcc-cceEEEEee--eeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEec-
Q psy3725 487 AL-DGDEVE--------WVKIPET-KGCLSFTTG--PLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVIL- 553 (760)
Q Consensus 487 ~L-~~~~~~--------~~kl~et-Kgc~~f~~g--~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~l- 553 (760)
.- .+.... ...+... .+....++. ....+. +|+++-. .-.|.+|.+...+ ....+..
T Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~---d~~i~iwd~~~~~----~~~~~~~~ 211 (437)
T 3gre_A 142 HYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS---LLVALTN---LSRVIIFDIRTLE----RLQIIENS 211 (437)
T ss_dssp EEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE---EEEEEET---TSEEEEEETTTCC----EEEEEECC
T ss_pred cccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC---EEEEEeC---CCeEEEEeCCCCe----eeEEEccC
Confidence 21 111000 0111110 111111111 111122 4444432 2378889875433 3444554
Q ss_pred --CCcceEEEEecCc-eEEEEEcCC-eEEEEec
Q psy3725 554 --PTLAQCIHIFSEG-RLCVGYQSG-FSIYKFS 582 (760)
Q Consensus 554 --P~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~ 582 (760)
...+.+|+|.+++ .|+.|...| -.++|+.
T Consensus 212 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 212 PRHGAVSSICIDEECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp GGGCCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 4789999998765 577788776 7788886
No 136
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=91.61 E-value=0.64 Score=45.69 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=35.5
Q ss_pred ccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHhh
Q psy3725 356 DIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILKR 403 (760)
Q Consensus 356 dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~~ 403 (760)
|-+.+|-|..++.+ ...+.|.|+|..+|+.|+++|+++....+.
T Consensus 133 d~~~~fli~~~~~g----~~~yel~a~s~~er~~W~~~I~~Ai~~~~~ 176 (185)
T 2lg1_A 133 EEKGLFLISMGMTD----PEMVEVHASSKEERNSWIQIIQDTINTLNR 176 (185)
T ss_dssp CSSEEEEECCSSSC----CCCEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEecCCC----CeEEEEEcCCHHHHHHHHHHHHHHHHhCCh
Confidence 55678888766544 256889999999999999999999988753
No 137
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=91.54 E-value=4.5 Score=36.35 Aligned_cols=54 Identities=19% Similarity=0.390 Sum_probs=40.0
Q ss_pred EeecCCCCeEEEeeccCcccccCCCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHH
Q psy3725 331 VLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRI 400 (760)
Q Consensus 331 ~ldl~d~~fsV~~V~~sdvi~a~~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~ 400 (760)
.++|.+ +.|..+..++ .++..|+|... ..+.++.|+|..+|++|+.+|+++.+-
T Consensus 55 ~~~L~~--~~v~d~~d~~-------~~~n~f~i~~~-------~~s~~~~aes~~eK~~Wl~~~~~a~~~ 108 (113)
T 1zc3_B 55 LYPLDR--LAVVNVKDNP-------PMKDMFKLLMF-------PESRIFQAENAKIKREWLEVLEETKRA 108 (113)
T ss_dssp EEETTT--CEEEEECCBT-------TBSSEEEEEET-------TEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEccc--CEEEECCCCc-------ccceEEEEEeC-------CceEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 356644 6676664322 57889999632 257899999999999999999998764
No 138
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=91.50 E-value=15 Score=38.45 Aligned_cols=206 Identities=10% Similarity=0.106 Sum_probs=111.1
Q ss_pred CCCCeeEEEEec-CCCeEEEEECCCCeEEEEECCCccCCC---cceeecCc-ccceEEEEeeeeCCCccceEEEEEEecC
Q psy3725 454 DTKKIYQMDYIP-EEQLLVVLAGKQRYVRLVPVRALDGDE---VEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQ 528 (760)
Q Consensus 454 ~~k~V~QI~Vi~-e~~lLlvLsgk~r~L~l~~L~~L~~~~---~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~ 528 (760)
+...|+.|...+ +.++|++ ++.+..|+++++..-.... .....+.. ...+..++. ...+. . +|+.+-.
T Consensus 80 h~~~V~~~~~~p~~~~~l~s-~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~p~~~-~-~l~s~~~-- 152 (402)
T 2aq5_A 80 HTAPVLDIAWCPHNDNVIAS-GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW--HPTAQ-N-VLLSAGC-- 152 (402)
T ss_dssp CSSCEEEEEECTTCTTEEEE-EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEE--CSSBT-T-EEEEEET--
T ss_pred CCCCEEEEEeCCCCCCEEEE-EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEE--CcCCC-C-EEEEEcC--
Confidence 557899999999 5565555 5557899999986532110 00112221 222333332 12221 1 4444432
Q ss_pred CceEEEEEEecCCcccceeeeeE---ecCCcceEEEEecCc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCccccccc
Q psy3725 529 NSSQIILYEITRTKTRHKRLHEV---ILPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTY 603 (760)
Q Consensus 529 ~~~~Vl~ye~~~~k~~fkk~kE~---~lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~ 603 (760)
.-+|.+|.+...+ ....+ ..+..+.+|.|..++ .|++|+..| ..++|+. ++.....+.. ..
T Consensus 153 -dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~--------~~ 218 (402)
T 2aq5_A 153 -DNVILVWDVGTGA----AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR-KGTVVAEKDR--------PH 218 (402)
T ss_dssp -TSCEEEEETTTTE----EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT-TTEEEEEEEC--------SS
T ss_pred -CCEEEEEECCCCC----ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC-CCceeeeecc--------CC
Confidence 2268889876443 23344 246788999998765 677777655 6777886 3333221100 01
Q ss_pred CCCCceEEEEeCCCeEEEEe-----cceEEEEcCCC-Cc-ccccceecCCCCcEEEeeC--CeEEEEe--CCeeEEEECc
Q psy3725 604 SPVDALLAIELPRGEFLLVF-----HSLAAYVDSQG-HK-SREKEIMYPALPTGASYMD--GQLLIFS--ETHVDVFNAE 672 (760)
Q Consensus 604 ~~~~pl~i~~l~~~EfLLcy-----~~~gvfVD~~G-~r-sR~~~I~W~~~P~~~ay~~--PYLlvf~--~~~IEVr~i~ 672 (760)
....+..+.-..++.+|.+- +..-.+.|... .. .....+.-......++|.. .+|++.. +..|-|+++.
T Consensus 219 ~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 219 EGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp CSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred CCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec
Confidence 11122333333566666653 23333345433 22 2222344556667777764 3776554 6789999999
Q ss_pred CCcE-EEEE
Q psy3725 673 SGDW-LQTV 680 (760)
Q Consensus 673 tg~l-VQtI 680 (760)
+++. ++.+
T Consensus 299 ~~~~~~~~l 307 (402)
T 2aq5_A 299 SEAPFLHYL 307 (402)
T ss_dssp SSTTCEEEE
T ss_pred CCCcceEee
Confidence 9882 5554
No 139
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=91.41 E-value=12 Score=36.97 Aligned_cols=215 Identities=10% Similarity=0.012 Sum_probs=105.6
Q ss_pred CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecC-cccceEEEEeeeeCCCccceEEEEEEecCCce
Q psy3725 453 GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIP-ETKGCLSFTTGPLTHTRTQHCLALAVKRQNSS 531 (760)
Q Consensus 453 ~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~-etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~ 531 (760)
++...|+.|.. ++.+.|++ ++.+..|+++++..-.. ...+. ....+..++. ...+. +|+++-. .-
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s-~~~dg~v~vw~~~~~~~----~~~~~~~~~~v~~~~~--~~~~~---~l~~~~~---dg 81 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVAS-VSRDGTVRLWSKDDQWL----GTVVYTGQGFLNSVCY--DSEKE---LLLFGGK---DT 81 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEE-EETTSEEEEEEESSSEE----EEEEEECSSCEEEEEE--ETTTT---EEEEEET---TS
T ss_pred CCCCCcEEEEe-cCCCEEEE-EEcCCcEEEEECCCCEE----EEEeecCCccEEEEEE--CCCCC---EEEEecC---CC
Confidence 35568999988 77777655 44578999999843211 11111 1122333322 22333 5555543 22
Q ss_pred EEEEEEecCCcccceeeeeEe-cCCcceEEEEecCceEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCce
Q psy3725 532 QIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEGRLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDAL 609 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl 609 (760)
.|.+|.+..... .+....+. ...++.+|.|-++ .|++|...| ..++| . ......+. ....++
T Consensus 82 ~i~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~d~~i~~~d-~--~~~~~~~~-----------~~~~~v 145 (313)
T 3odt_A 82 MINGVPLFATSG-EDPLYTLIGHQGNVCSLSFQDG-VVISGSWDKTAKVWK-E--GSLVYNLQ-----------AHNASV 145 (313)
T ss_dssp CEEEEETTCCTT-SCC-CEECCCSSCEEEEEEETT-EEEEEETTSEEEEEE-T--TEEEEEEE-----------CCSSCE
T ss_pred eEEEEEeeecCC-CCcccchhhcccCEEEEEecCC-EEEEEeCCCCEEEEc-C--CcEEEecc-----------cCCCce
Confidence 567777643321 12222332 3567788999655 888888765 44455 1 11111111 111222
Q ss_pred ---EEEEeCCCeEEE-EecceEEE-EcCCCCcccccceecCCCCcEEEeeCC--eEEEEeCCeeEEEECcCCcEEEEEec
Q psy3725 610 ---LAIELPRGEFLL-VFHSLAAY-VDSQGHKSREKEIMYPALPTGASYMDG--QLLIFSETHVDVFNAESGDWLQTVNI 682 (760)
Q Consensus 610 ---~i~~l~~~EfLL-cy~~~gvf-VD~~G~rsR~~~I~W~~~P~~~ay~~P--YLlvf~~~~IEVr~i~tg~lVQtI~~ 682 (760)
+.... ++.+|+ +..+-.++ .| .+...+.....-.....++++... ++.+..+..|.|+++.+++.++++..
T Consensus 146 ~~~~~~~~-~~~~l~~~~~d~~i~i~d-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~ 223 (313)
T 3odt_A 146 WDAKVVSF-SENKFLTASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEG 223 (313)
T ss_dssp EEEEEEET-TTTEEEEEETTSCEEEEE-TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred eEEEEccC-CCCEEEEEECCCCEEEEe-cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhc
Confidence 22221 333333 33222222 23 232222211112333445666432 44455567899999999999999864
Q ss_pred CC--cee--cCCCCCEEEEec
Q psy3725 683 RR--ALP--LDTRGSLCFSLA 699 (760)
Q Consensus 683 ~~--ir~--L~s~G~l~l~s~ 699 (760)
.. +.- ...+|.++.++.
T Consensus 224 ~~~~i~~~~~~~~~~l~~~~~ 244 (313)
T 3odt_A 224 HESFVYCIKLLPNGDIVSCGE 244 (313)
T ss_dssp CSSCEEEEEECTTSCEEEEET
T ss_pred CCceEEEEEEecCCCEEEEec
Confidence 43 322 234565444443
No 140
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=90.97 E-value=17 Score=38.10 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=115.8
Q ss_pred CCeeEEEEecCCCeEEE-EEc-C------CCCCCceEEc-CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC
Q psy3725 422 TKKIYQMDYIPKEQLLV-VLA-G------KQRYVQIARV-GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE 492 (760)
Q Consensus 422 ~~~i~Caa~~~~~rllv-GTe-~------l~~~~~l~rv-~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~ 492 (760)
...|+|.+.-.++++++ |.. + +.....+..+ .....+..+.+-++.+.+++.++.+..|+++++..-..
T Consensus 169 ~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-- 246 (433)
T 3bws_A 169 LGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-- 246 (433)
T ss_dssp CCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE--
T ss_pred CCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE--
Confidence 34577776534455544 433 2 2332122333 24567999999999888877776678999999853211
Q ss_pred cceeecCcccceEEEEeeeeCCCccceEEEEEEecCC-----ceEEEEEEecCCcccceeeeeEecCCcceEEEEecCc-
Q psy3725 493 VEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQN-----SSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG- 566 (760)
Q Consensus 493 ~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~-----~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~- 566 (760)
...+....+...++. ...+. +|+++....+ .-.|.+|.+...+ ....+..+..+.++.|..++
T Consensus 247 --~~~~~~~~~~~~~~~--~~~g~---~l~~~~~~~~~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~g~ 315 (433)
T 3bws_A 247 --IRKTDKIGLPRGLLL--SKDGK---ELYIAQFSASNQESGGGRLGIYSMDKEK----LIDTIGPPGNKRHIVSGNTEN 315 (433)
T ss_dssp --EEECCCCSEEEEEEE--CTTSS---EEEEEEEESCTTCSCCEEEEEEETTTTE----EEEEEEEEECEEEEEECSSTT
T ss_pred --EEEecCCCCceEEEE--cCCCC---EEEEEECCCCccccCCCeEEEEECCCCc----EEeeccCCCCcceEEECCCCC
Confidence 122222222332322 22333 4555542111 1268889875433 23445556788889998876
Q ss_pred eEEEEEc--CCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEEEecc-----------------eE
Q psy3725 567 RLCVGYQ--SGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVFHS-----------------LA 627 (760)
Q Consensus 567 ~LcVG~~--~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~~-----------------~g 627 (760)
.|.+... ....++|+. ++.....+.. ...|.++.--+++.+|++-+. .-
T Consensus 316 ~l~~~~~~~~~v~v~d~~-~~~~~~~~~~-----------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v 383 (433)
T 3bws_A 316 KIYVSDMCCSKIEVYDLK-EKKVQKSIPV-----------FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKV 383 (433)
T ss_dssp EEEEEETTTTEEEEEETT-TTEEEEEEEC-----------SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEE
T ss_pred EEEEEecCCCEEEEEECC-CCcEEEEecC-----------CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEE
Confidence 4666533 236677775 3333222211 112222222234555543322 22
Q ss_pred EEEcC-CCCcccccceecCCCCcEEEeeC--CeEEEEe--CCeeEEEECc
Q psy3725 628 AYVDS-QGHKSREKEIMYPALPTGASYMD--GQLLIFS--ETHVDVFNAE 672 (760)
Q Consensus 628 vfVD~-~G~rsR~~~I~W~~~P~~~ay~~--PYLlvf~--~~~IEVr~i~ 672 (760)
...|. .|+... .+.=...|.+++|.. .||++.. ++.|.|++++
T Consensus 384 ~~~d~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 384 YVIDTTTDTVKE--FWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEETTTTEEEE--EEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEECCCCcEEE--EecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 22343 333332 222245667777753 4776664 5678888765
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=90.83 E-value=15 Score=37.12 Aligned_cols=209 Identities=12% Similarity=0.018 Sum_probs=111.0
Q ss_pred CCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCccc------ceEEEEeeeeCCCccceEEEEEEecCC
Q psy3725 456 KKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETK------GCLSFTTGPLTHTRTQHCLALAVKRQN 529 (760)
Q Consensus 456 k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etK------gc~~f~~g~~~~~~~~~~LcVAvKr~~ 529 (760)
..+..+.+-++-+.+++....+..|.++++..-.. .....+.... ..+...+.....+. .+.++-.. .
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~~~~~-~ 162 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV--KGRLVLDDRKRTEEVRPLQPRELVADDATN---TVYISGIG-K 162 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEEEESCCCCCCSSCCCCEEEEEEEETTTT---EEEEEEES-S
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCee--EEEEecCCCccccccCCCCCceEEECCCCC---EEEEEecC-C
Confidence 45777888888887777777678999998853221 1112222111 01122222233344 45555421 1
Q ss_pred ceEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCC
Q psy3725 530 SSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPV 606 (760)
Q Consensus 530 ~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~ 606 (760)
.-+|.+|..... +....+. ....+..+.|..+| .|.++...+ ..++|+. ++.....+...+.. ...
T Consensus 163 ~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~------~~~ 231 (353)
T 3vgz_A 163 ESVIWVVDGGNI----KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTA-DNKILSRKKLLDDG------KEH 231 (353)
T ss_dssp SCEEEEEETTTT----EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT-TTEEEEEEECCCSS------SCC
T ss_pred CceEEEEcCCCC----ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECC-CCeEEEEEEcCCCC------CCc
Confidence 236888876432 3345555 34447789998776 577766543 5566665 33333222111000 011
Q ss_pred CceEEEEeCCCeEEEEec---ceEEEEcC-CCCcccccceecCCCCcEEEeeC--CeEEEEe--CCeeEEEECcCCcEEE
Q psy3725 607 DALLAIELPRGEFLLVFH---SLAAYVDS-QGHKSREKEIMYPALPTGASYMD--GQLLIFS--ETHVDVFNAESGDWLQ 678 (760)
Q Consensus 607 ~pl~i~~l~~~EfLLcy~---~~gvfVD~-~G~rsR~~~I~W~~~P~~~ay~~--PYLlvf~--~~~IEVr~i~tg~lVQ 678 (760)
.|..+.--.++.+|.+-+ ..-..+|. .|+..+. +.- ..|..++|.. .+|++.. .+.|.|+++.+++.++
T Consensus 232 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 232 FFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK--VAA-PESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK 308 (353)
T ss_dssp CEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE--EEC-SSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE--EEc-CCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence 222222223455444322 22233454 4444332 332 3467788764 3777776 4789999999999999
Q ss_pred EEecCC
Q psy3725 679 TVNIRR 684 (760)
Q Consensus 679 tI~~~~ 684 (760)
.++...
T Consensus 309 ~~~~~~ 314 (353)
T 3vgz_A 309 TFDTPT 314 (353)
T ss_dssp EEECCS
T ss_pred EEecCC
Confidence 997654
No 142
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=90.75 E-value=17 Score=43.83 Aligned_cols=213 Identities=12% Similarity=0.163 Sum_probs=109.7
Q ss_pred ceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEec
Q psy3725 448 QIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKR 527 (760)
Q Consensus 448 ~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr 527 (760)
...+.+....|+.|++-++.++|++ ++.+..|++++...... ...+.....+...+.. . +. +|+.+-.
T Consensus 10 ~~~~~gh~~~V~~lafspdg~~lAs-gs~Dg~I~lw~~~~~~~----~~~~~~~~~V~~l~fs--p-g~---~L~S~s~- 77 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQNLLAI-ATVTGEVHIYGQQQVEV----VIKLEDRSAIKEMRFV--K-GI---YLVVINA- 77 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEE-EETTSEEEEECSTTCEE----EEECSSCCCEEEEEEE--T-TT---EEEEEET-
T ss_pred cccccCCCCCcEEEEECCCCCEEEE-EeCCCEEEEEeCCCcEE----EEEcCCCCCEEEEEEc--C-CC---EEEEEEC-
Confidence 3445556678999999998776655 44567899987643211 1122222223322222 2 23 3444432
Q ss_pred CCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCC
Q psy3725 528 QNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSP 605 (760)
Q Consensus 528 ~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~ 605 (760)
.-+|.+|.+...+ .+..+..+..+.+++|..++ .|++|...| ..++|+. +....++.-+.-........+.
T Consensus 78 --D~~v~lWd~~~~~----~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~-~~~~~~~~i~~~~~~~~~~~~h 150 (902)
T 2oaj_A 78 --KDTVYVLSLYSQK----VLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDID-RDQLSSFKLDNLQKSSFFPAAR 150 (902)
T ss_dssp --TCEEEEEETTTCS----EEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETT-TTEEEEEEECCHHHHHTCSSSC
T ss_pred --cCeEEEEECCCCc----EEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECC-CCccccceeccccccccccccC
Confidence 2378999976433 33455678889999998765 788888765 7788886 3322111000000000001112
Q ss_pred CCceEEEEeCC---CeEEEEecceEEEEcCCC-Ccccccceec--------------C---CCCcEEEeeC--CeEEEEe
Q psy3725 606 VDALLAIELPR---GEFLLVFHSLAAYVDSQG-HKSREKEIMY--------------P---ALPTGASYMD--GQLLIFS 662 (760)
Q Consensus 606 ~~pl~i~~l~~---~EfLLcy~~~gvfVD~~G-~rsR~~~I~W--------------~---~~P~~~ay~~--PYLlvf~ 662 (760)
..++..+..+. +.++.++++-.|.-|... +..+.....+ . ....+++|.. .||+.-+
T Consensus 151 ~~~V~sl~~sp~~~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs 230 (902)
T 2oaj_A 151 LSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH 230 (902)
T ss_dssp CCCCCEEEEETTEEEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred CCCeEEEEEccCCCCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence 23433333322 123444444444444322 2111111111 0 2234566653 3666655
Q ss_pred -CCeeEEEECcCCcEEEE
Q psy3725 663 -ETHVDVFNAESGDWLQT 679 (760)
Q Consensus 663 -~~~IEVr~i~tg~lVQt 679 (760)
+..|.|+++.+|+.++.
T Consensus 231 ~Dg~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 231 EDNSLVFWDANSGHMIMA 248 (902)
T ss_dssp TTCCEEEEETTTCCEEEE
T ss_pred CCCeEEEEECCCCcEEEE
Confidence 45799999999999886
No 143
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=90.68 E-value=2.1 Score=44.82 Aligned_cols=40 Identities=25% Similarity=0.532 Sum_probs=31.2
Q ss_pred ceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 358 PCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 358 p~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
|+.|.|.... .|+....++|.|.|..+|++|+.+|..+..
T Consensus 269 ~~~F~i~~~~--~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~ 308 (311)
T 1nty_A 269 PCKFALWVGR--TPTSDNKIVLKASSIENKQDWIKHIREVIQ 308 (311)
T ss_dssp TTEEEEEESS--SCCTTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCC--CCCCCceEEEECCCHHHHHHHHHHHHHHHh
Confidence 7889997632 233346789999999999999999988754
No 144
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.44 E-value=3.4 Score=37.28 Aligned_cols=76 Identities=21% Similarity=0.217 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Q psy3725 23 YLQALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRS 102 (760)
Q Consensus 23 ylq~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~ 102 (760)
-|+....+++-|+|++|.- +.. .++...+. =..+|+|+++.|.
T Consensus 7 dL~~~~~~L~~E~e~~k~K-----------------------------~~~-----~~~e~~~~---~~~Lq~El~~lr~ 49 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEK-----------------------------LEH-----QYAQSYKQ---VSVLEDDLSQTRA 49 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------------------------HHH-----HHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------------------HHH-----HHHHHHHH---HHHHHHHHHHHHH
Confidence 3678888999999999963 111 11222222 2456778888888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 103 ELIAAQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 103 ~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
.+-.+..++++.|+.|++|.+.--....=++++
T Consensus 50 ~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 50 IKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 999999999999999999887654443334443
No 145
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=90.43 E-value=20 Score=37.82 Aligned_cols=145 Identities=16% Similarity=0.227 Sum_probs=78.5
Q ss_pred eeEEEEec-CCCeEEEEEc-C------CCCCCceEEc--CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCc
Q psy3725 424 KIYQMDYI-PKEQLLVVLA-G------KQRYVQIARV--GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEV 493 (760)
Q Consensus 424 ~i~Caa~~-~~~rllvGTe-~------l~~~~~l~rv--~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~ 493 (760)
.|.|.+.- ++..|+.|++ + +... ...+. ++...|..+...++.+.|+.-+ .++.|+++++..-..
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s-~d~~v~iwd~~~~~~--- 199 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSGS-GDRTVRIWDLRTGQC--- 199 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEE---
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEccCCCCEEEEEEcCCCCEEEEec-CCCcEEEEECCCCee---
Confidence 35666532 4456888877 2 3333 33332 3456799999999988776654 478999999853211
Q ss_pred ceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeee-e----EecCCcceEEEEecCc-e
Q psy3725 494 EWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLH-E----VILPTLAQCIHIFSEG-R 567 (760)
Q Consensus 494 ~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~k-E----~~lP~~~~sl~~~~~~-~ 567 (760)
...+....+...++.... .+. +|+++-. .-.|.+|.....+.. ..+. + ......+.++.|.++| .
T Consensus 200 -~~~~~~~~~v~~~~~~~~-~~~---~l~~~s~---d~~v~iwd~~~~~~~-~~~~~~~~~~~~h~~~v~~v~~~~~g~~ 270 (393)
T 1erj_A 200 -SLTLSIEDGVTTVAVSPG-DGK---YIAAGSL---DRAVRVWDSETGFLV-ERLDSENESGTGHKDSVYSVVFTRDGQS 270 (393)
T ss_dssp -EEEEECSSCEEEEEECST-TCC---EEEEEET---TSCEEEEETTTCCEE-EEEC------CCCSSCEEEEEECTTSSE
T ss_pred -EEEEEcCCCcEEEEEECC-CCC---EEEEEcC---CCcEEEEECCCCcEE-EeecccccCCCCCCCCEEEEEECCCCCE
Confidence 111221223333332211 223 4444432 225778886543211 1110 0 1234678899999876 5
Q ss_pred EEEEEcCC-eEEEEec
Q psy3725 568 LCVGYQSG-FSIYKFS 582 (760)
Q Consensus 568 LcVG~~~g-F~ivdl~ 582 (760)
|+.|...| ..++|+.
T Consensus 271 l~s~s~d~~v~~wd~~ 286 (393)
T 1erj_A 271 VVSGSLDRSVKLWNLQ 286 (393)
T ss_dssp EEEEETTSEEEEEEC-
T ss_pred EEEEeCCCEEEEEECC
Confidence 66666554 6677775
No 146
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=90.40 E-value=17 Score=36.97 Aligned_cols=240 Identities=9% Similarity=0.050 Sum_probs=120.3
Q ss_pred CeeEEEEec-CCCeEEEEEc-C------CCCCC--ceEEc-CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCC
Q psy3725 423 KKIYQMDYI-PKEQLLVVLA-G------KQRYV--QIARV-GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGD 491 (760)
Q Consensus 423 ~~i~Caa~~-~~~rllvGTe-~------l~~~~--~l~rv-~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~ 491 (760)
..|.|.+.- ++..|++|+. + +.... .+..+ .....|..|.+.++.++|++-+ .++.|+++++..-..
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~- 86 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-TDRNAYVWTLKGRTW- 86 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-TTSCEEEEEEETTEE-
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc-CCCeEEEEECCCCee-
Confidence 456676643 3445888865 2 22221 22223 3567899999999888776655 468899999833210
Q ss_pred CcceeecC-cccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe--cCCcceEEEEecCc-e
Q psy3725 492 EVEWVKIP-ETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI--LPTLAQCIHIFSEG-R 567 (760)
Q Consensus 492 ~~~~~kl~-etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~--lP~~~~sl~~~~~~-~ 567 (760)
.....+. ....+..++. ...+. +|+++-.. + .|.+|.+...... .....+. ....+.+|.|.+++ .
T Consensus 87 -~~~~~~~~~~~~v~~~~~--~~~~~---~l~~~~~d-~--~v~i~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 87 -KPTLVILRINRAARCVRW--APNEK---KFAVGSGS-R--VISICYFEQENDW-WVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp -EEEEECCCCSSCEEEEEE--CTTSS---EEEEEETT-S--SEEEEEEETTTTE-EEEEEECTTCCSCEEEEEECTTSSE
T ss_pred -eeeEEeecCCCceeEEEE--CCCCC---EEEEEeCC-C--EEEEEEecCCCcc-eeeeeeecccCCCeeEEEEcCCCCE
Confidence 0011111 1222333332 22333 56655431 2 5677776544321 1222332 35778899999765 5
Q ss_pred EEEEEcCC-eEEEEecCCCCcee--ecCCC-----CCcccccccCCCCceEEEEe-CCCeEEEEe--cceEEEEcC-CCC
Q psy3725 568 LCVGYQSG-FSIYKFSQDNRPIP--LIHQD-----NPLVSLLTYSPVDALLAIEL-PRGEFLLVF--HSLAAYVDS-QGH 635 (760)
Q Consensus 568 LcVG~~~g-F~ivdl~~~~~~~~--Ll~~~-----d~sl~f~~~~~~~pl~i~~l-~~~EfLLcy--~~~gvfVD~-~G~ 635 (760)
|++|...| ..++|+.. ..... ...+- ....-........++..+.. +++.+|++- |..-.+.|. .|+
T Consensus 157 l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 157 LAAGSCDFKCRIFSAYI-KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 235 (372)
T ss_dssp EEEEETTSCEEEEECCC-TTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred EEEEcCCCCEEEEEccc-ccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 77777654 67888741 11000 00000 00000001122344444444 344455533 222222333 344
Q ss_pred cccccceecCC-CCcEEEeeC--CeEEEEeCCeeEEEECcC--CcEE
Q psy3725 636 KSREKEIMYPA-LPTGASYMD--GQLLIFSETHVDVFNAES--GDWL 677 (760)
Q Consensus 636 rsR~~~I~W~~-~P~~~ay~~--PYLlvf~~~~IEVr~i~t--g~lV 677 (760)
... .+.-.. ...+++|.. .||.+-.++.|-|+++.+ |.|.
T Consensus 236 ~~~--~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~ 280 (372)
T 1k8k_C 236 AVA--TLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLS 280 (372)
T ss_dssp EEE--EEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEE
T ss_pred eeE--EEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEE
Confidence 332 233233 235566653 377777788999999998 7653
No 147
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=90.24 E-value=21 Score=37.93 Aligned_cols=220 Identities=12% Similarity=0.125 Sum_probs=116.3
Q ss_pred CCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEE
Q psy3725 456 KKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQII 534 (760)
Q Consensus 456 k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl 534 (760)
..|+.+.. +.+.+++ ++.+..|+++++..... ...+.. ...+..++. .+. +|+++-. .-+|.
T Consensus 134 ~~v~~~~~--d~~~l~~-g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~----~~~---~l~sg~~---dg~i~ 196 (435)
T 1p22_A 134 KGVYCLQY--DDQKIVS-GLRDNTIKIWDKNTLEC----KRILTGHTGSVLCLQY----DER---VIITGSS---DSTVR 196 (435)
T ss_dssp CCEEEEEC--CSSEEEE-EESSSCEEEEESSSCCE----EEEECCCSSCEEEEEC----CSS---EEEEEET---TSCEE
T ss_pred CcEEEEEE--CCCEEEE-EeCCCeEEEEeCCCCeE----EEEEcCCCCcEEEEEE----CCC---EEEEEcC---CCeEE
Confidence 45666655 4444444 44578999999854321 122221 223333333 233 4555542 22688
Q ss_pred EEEecCCcccceeeeeEe-cCCcceEEEEecCceEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEE
Q psy3725 535 LYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEGRLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAI 612 (760)
Q Consensus 535 ~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~ 612 (760)
+|.+..++. ...+. -...+.++.|.++ .|+.|...| ..++|+. +.....+. ....+...++..+
T Consensus 197 vwd~~~~~~----~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~-~~~~~~~~--------~~~~~~~~~v~~~ 262 (435)
T 1p22_A 197 VWDVNTGEM----LNTLIHHCEAVLHLRFNNG-MMVTCSKDRSIAVWDMA-SPTDITLR--------RVLVGHRAAVNVV 262 (435)
T ss_dssp EEESSSCCE----EEEECCCCSCEEEEECCTT-EEEEEETTSCEEEEECS-SSSCCEEE--------EEECCCSSCEEEE
T ss_pred EEECCCCcE----EEEEcCCCCcEEEEEEcCC-EEEEeeCCCcEEEEeCC-CCCCceee--------eEecCCCCcEEEE
Confidence 898765432 22332 3567888999766 888888755 6777886 22221110 0111223445444
Q ss_pred EeCCCeEEEEecce-EEEEcC-CCCcccccceec-CCCCcEEEeeCCeEEEEe-CCeeEEEECcCCcEEEEEecCC--ce
Q psy3725 613 ELPRGEFLLVFHSL-AAYVDS-QGHKSREKEIMY-PALPTGASYMDGQLLIFS-ETHVDVFNAESGDWLQTVNIRR--AL 686 (760)
Q Consensus 613 ~l~~~EfLLcy~~~-gvfVD~-~G~rsR~~~I~W-~~~P~~~ay~~PYLlvf~-~~~IEVr~i~tg~lVQtI~~~~--ir 686 (760)
....+.++.+..+- -...|. .|+..+. +.- .....++++...+|++-+ ++.|-|+++.+|+.++++.+.. +.
T Consensus 263 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 340 (435)
T 1p22_A 263 DFDDKYIVSASGDRTIKVWNTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 340 (435)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred EeCCCEEEEEeCCCeEEEEECCcCcEEEE--EcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEE
Confidence 44333333333322 222343 3443322 221 233346777777777766 5579999999999999986443 44
Q ss_pred ecCCCCCEEEEecCCccEEEEe
Q psy3725 687 PLDTRGSLCFSLANDIPYVVYL 708 (760)
Q Consensus 687 ~L~s~G~l~l~s~~~~~~~~~~ 708 (760)
-+.-+|..++.+..+-.+.++.
T Consensus 341 ~~~~~~~~l~sg~~dg~i~vwd 362 (435)
T 1p22_A 341 CIRFDNKRIVSGAYDGKIKVWD 362 (435)
T ss_dssp EEECCSSEEEEEETTSCEEEEE
T ss_pred EEEecCCEEEEEeCCCcEEEEE
Confidence 4444666665554444454443
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=89.58 E-value=20 Score=36.57 Aligned_cols=238 Identities=11% Similarity=0.075 Sum_probs=116.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEC--CCCeEEEEECCCccCCCcce-eecC-cccceEEEEeeeeCCCccceEEEEEEecCC
Q psy3725 454 DTKKIYQMDYIPEEQLLVVLAG--KQRYVRLVPVRALDGDEVEW-VKIP-ETKGCLSFTTGPLTHTRTQHCLALAVKRQN 529 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~~lLlvLsg--k~r~L~l~~L~~L~~~~~~~-~kl~-etKgc~~f~~g~~~~~~~~~~LcVAvKr~~ 529 (760)
....+..|.+-++-+ |++.+. .+..|++|+++ ...... ..+. .......+++ ...+. +|+++-..
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~---~g~~~~~~~~~~~~~~p~~~a~--spdg~---~l~~~~~~-- 106 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQID---GQTAHKLNTVVAPGTPPAYVAV--DEARQ---LVYSANYH-- 106 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEE---TTEEEEEEEEEEESCCCSEEEE--ETTTT---EEEEEETT--
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEec---CCcEEEeeeeecCCCCCEEEEE--CCCCC---EEEEEeCC--
Confidence 345677788888777 555543 24689999873 211111 1110 1111222222 22344 56666532
Q ss_pred ceEEEEEEecCCcccceeeeeEecCC----------cceEEEEecCceEEEEEcC--CeEEEEecCCCCceeecCCCCCc
Q psy3725 530 SSQIILYEITRTKTRHKRLHEVILPT----------LAQCIHIFSEGRLCVGYQS--GFSIYKFSQDNRPIPLIHQDNPL 597 (760)
Q Consensus 530 ~~~Vl~ye~~~~k~~fkk~kE~~lP~----------~~~sl~~~~~~~LcVG~~~--gF~ivdl~~~~~~~~Ll~~~d~s 597 (760)
.-+|.+|.+..+. ....+..+.... .+.++.|..+|++.+.... ...++++..++....+..
T Consensus 107 ~~~v~v~~~~~~g-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~----- 180 (347)
T 3hfq_A 107 KGTAEVMKIAADG-ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSV----- 180 (347)
T ss_dssp TTEEEEEEECTTS-CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEE-----
T ss_pred CCEEEEEEeCCCC-CeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeee-----
Confidence 2267778774322 233444444322 3677999998886665532 266778862232221110
Q ss_pred ccccccCCCCceEEEEeCCCeEEEEec----ceEEE-EcC-CCCcccccceec-C------CCCcEEEeeCC--eEEEEe
Q psy3725 598 VSLLTYSPVDALLAIELPRGEFLLVFH----SLAAY-VDS-QGHKSREKEIMY-P------ALPTGASYMDG--QLLIFS 662 (760)
Q Consensus 598 l~f~~~~~~~pl~i~~l~~~EfLLcy~----~~gvf-VD~-~G~rsR~~~I~W-~------~~P~~~ay~~P--YLlvf~ 662 (760)
+.......|..+.--+++.+|++-+ ...+| +|. .|.......+.. + ..|.++++..- ||++..
T Consensus 181 --~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~ 258 (347)
T 3hfq_A 181 --LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSN 258 (347)
T ss_dssp --EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEE
T ss_pred --EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEe
Confidence 0001122343332224556554432 22233 232 243222222221 1 23666777643 776654
Q ss_pred --CCeeEEEECc-CC--cEEEEEecC--Ccee--cCCCCC-EEEEecCCccEEEEeec
Q psy3725 663 --ETHVDVFNAE-SG--DWLQTVNIR--RALP--LDTRGS-LCFSLANDIPYVVYLAN 710 (760)
Q Consensus 663 --~~~IEVr~i~-tg--~lVQtI~~~--~ir~--L~s~G~-l~l~s~~~~~~~~~~~~ 710 (760)
.+.|.|+++. +| ..++.++.. .++- +..+|. |+++..+.-.+-+|.-+
T Consensus 259 ~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 259 RGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 5789999997 33 667777542 2332 345675 66665543445555433
No 149
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=88.80 E-value=21 Score=35.95 Aligned_cols=225 Identities=8% Similarity=0.083 Sum_probs=115.4
Q ss_pred CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCccc-ceEEEEeeeeCCCccceEEEEEEecCCceE
Q psy3725 454 DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETK-GCLSFTTGPLTHTRTQHCLALAVKRQNSSQ 532 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etK-gc~~f~~g~~~~~~~~~~LcVAvKr~~~~~ 532 (760)
....|..|.+-|+.++|+.-+ .+..|+++++..-. ....+.... .+... .....+. +|+++-. .-+
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~-~dg~v~lWd~~~~~----~~~~~~~~~~~v~~~--~~~~~~~---~l~s~s~---d~~ 78 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQV----EVRSIQVTETPVRAG--KFIARKN---WIIVGSD---DFR 78 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTE----EEEEEECCSSCEEEE--EEEGGGT---EEEEEET---TSE
T ss_pred CCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCc----eeEEeeccCCcEEEE--EEeCCCC---EEEEECC---CCE
Confidence 446799999999988777644 47899999984321 011222111 11111 1112233 4554432 237
Q ss_pred EEEEEecCCcccceeeeeEe-cCCcceEEEEecCc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCce
Q psy3725 533 IILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDAL 609 (760)
Q Consensus 533 Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl 609 (760)
|.+|.+..++ ....+. -++.+.+|.|.+++ .|..|...| -.++|+.........+. +...++
T Consensus 79 i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-----------~h~~~v 143 (304)
T 2ynn_A 79 IRVFNYNTGE----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-----------GHEHFV 143 (304)
T ss_dssp EEEEETTTCC----EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC-----------CCCSCE
T ss_pred EEEEECCCCc----EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc-----------ccCCcE
Confidence 8889875443 233343 46778999999876 455666544 67788862212212121 122333
Q ss_pred EEEEeC--CCeEEE-E-ecceEEEEcC-CCCcccccceecC-CCC-cEEEee----CCeEEEEe-CCeeEEEECcCCcEE
Q psy3725 610 LAIELP--RGEFLL-V-FHSLAAYVDS-QGHKSREKEIMYP-ALP-TGASYM----DGQLLIFS-ETHVDVFNAESGDWL 677 (760)
Q Consensus 610 ~i~~l~--~~EfLL-c-y~~~gvfVD~-~G~rsR~~~I~W~-~~P-~~~ay~----~PYLlvf~-~~~IEVr~i~tg~lV 677 (760)
..+..+ ++.+|+ + .|..-..-|. .+... ..+.-. ..+ ..+.|. .+||+.-+ +..|-|+++.++..+
T Consensus 144 ~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~ 221 (304)
T 2ynn_A 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN--FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221 (304)
T ss_dssp EEEEECTTCTTEEEEEETTSEEEEEETTCSSCS--EEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc--ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc
Confidence 333332 223333 2 2333233343 12111 111111 111 223332 24776665 557999999999999
Q ss_pred EEEecCC--cee--cCCCCCEEEEecCCccEEEEe
Q psy3725 678 QTVNIRR--ALP--LDTRGSLCFSLANDIPYVVYL 708 (760)
Q Consensus 678 QtI~~~~--ir~--L~s~G~l~l~s~~~~~~~~~~ 708 (760)
+++.+.. +.. .+++|.+++.+..+-.+-++.
T Consensus 222 ~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred eeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 9997543 332 245666555544444444443
No 150
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=88.74 E-value=26 Score=36.80 Aligned_cols=228 Identities=7% Similarity=0.076 Sum_probs=110.1
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCCCceEEc-CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRYVQIARV-GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE 492 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~~~l~rv-~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~ 492 (760)
...|.|.+.. ++..|++|+. | +.....+..+ .....|..+..- .++ ++.++.+..|+++++..-..
T Consensus 134 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~-l~~~~~dg~i~i~d~~~~~~-- 208 (401)
T 4aez_A 134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHV-LSSGSRSGAIHHHDVRIANH-- 208 (401)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTE-EEEEETTSEEEEEETTSSSC--
T ss_pred CCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCE-EEEEcCCCCEEEEecccCcc--
Confidence 3457777643 3456889986 3 3333233333 355678888883 344 44455678999999853211
Q ss_pred cceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeE-ecCCcceEEEEecCc--eE
Q psy3725 493 VEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEV-ILPTLAQCIHIFSEG--RL 568 (760)
Q Consensus 493 ~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~-~lP~~~~sl~~~~~~--~L 568 (760)
....+.. ...+..++. ...+. +|+++-. .-.|.+|.+...+. ...+ .....+.+|.|..++ -+
T Consensus 209 -~~~~~~~~~~~v~~~~~--~~~~~---~l~s~~~---d~~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~p~~~~ll 275 (401)
T 4aez_A 209 -QIGTLQGHSSEVCGLAW--RSDGL---QLASGGN---DNVVQIWDARSSIP----KFTKTNHNAAVKAVAWCPWQSNLL 275 (401)
T ss_dssp -EEEEEECCSSCEEEEEE--CTTSS---EEEEEET---TSCEEEEETTCSSE----EEEECCCSSCCCEEEECTTSTTEE
T ss_pred -eeeEEcCCCCCeeEEEE--cCCCC---EEEEEeC---CCeEEEccCCCCCc----cEEecCCcceEEEEEECCCCCCEE
Confidence 1112211 122333332 22333 5555543 12688898754332 2223 346778899999753 34
Q ss_pred EEEE---cCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEe-CCCeEEEEe----cceEEEEcC-CCCcccc
Q psy3725 569 CVGY---QSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIEL-PRGEFLLVF----HSLAAYVDS-QGHKSRE 639 (760)
Q Consensus 569 cVG~---~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l-~~~EfLLcy----~~~gvfVD~-~G~rsR~ 639 (760)
+.|. .....++|+. ++.....+.. ..++..+.. .++.+|++- +..-...|. .|.....
T Consensus 276 ~~~~gs~d~~i~i~d~~-~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~ 342 (401)
T 4aez_A 276 ATGGGTMDKQIHFWNAA-TGARVNTVDA------------GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ 342 (401)
T ss_dssp EEECCTTTCEEEEEETT-TCCEEEEEEC------------SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEE
T ss_pred EEecCCCCCEEEEEECC-CCCEEEEEeC------------CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeE
Confidence 4443 4557788886 3333322221 112222222 233444331 121112222 2222222
Q ss_pred cceecC-CCCcEEEee--CCeEEEEe-CCeeEEEECcCCcEEEEE
Q psy3725 640 KEIMYP-ALPTGASYM--DGQLLIFS-ETHVDVFNAESGDWLQTV 680 (760)
Q Consensus 640 ~~I~W~-~~P~~~ay~--~PYLlvf~-~~~IEVr~i~tg~lVQtI 680 (760)
..+.-. +....++|. .+||+... +..|-|+++.+++.++..
T Consensus 343 ~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 343 VDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred EEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 222222 334455664 45777666 457999999999888763
No 151
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=88.71 E-value=20 Score=35.45 Aligned_cols=124 Identities=10% Similarity=0.085 Sum_probs=71.2
Q ss_pred cCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecC-cccceEEEEeeeeCCCccceEEEEEEecCCc
Q psy3725 452 VGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIP-ETKGCLSFTTGPLTHTRTQHCLALAVKRQNS 530 (760)
Q Consensus 452 v~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~-etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~ 530 (760)
-++...|+.|.+-++.++|+. ++.+..|+++++..-.........+. ....+..++......+. +|+++-. .
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~---~l~s~~~---d 80 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVAT-CSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR---IIASASY---D 80 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEE-EETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS---EEEEEET---T
T ss_pred cccccceeEEEEcCCCCEEEE-eeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC---EEEEEcC---C
Confidence 346678999999998776655 44578999999854322100111222 12233333332211133 4555543 1
Q ss_pred eEEEEEEecCCcc-----cceeeeeEe-cCCcceEEEEecC--c-eEEEEEcCC-eEEEEec
Q psy3725 531 SQIILYEITRTKT-----RHKRLHEVI-LPTLAQCIHIFSE--G-RLCVGYQSG-FSIYKFS 582 (760)
Q Consensus 531 ~~Vl~ye~~~~k~-----~fkk~kE~~-lP~~~~sl~~~~~--~-~LcVG~~~g-F~ivdl~ 582 (760)
-+|.+|.+..... .++....+. ....+.+|.|..+ + .|++|...| ..++|+.
T Consensus 81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 2688888754321 123344443 4677899999975 4 577777665 7788886
No 152
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=88.42 E-value=29 Score=36.93 Aligned_cols=248 Identities=7% Similarity=0.051 Sum_probs=124.0
Q ss_pred eEEEEecCCCeEEEEEc-C------CCCCCceEEc-CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCccee
Q psy3725 425 IYQMDYIPKEQLLVVLA-G------KQRYVQIARV-GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWV 496 (760)
Q Consensus 425 i~Caa~~~~~rllvGTe-~------l~~~~~l~rv-~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~ 496 (760)
+.|.. ++++.|+.|+. + +.....+..+ +....|..+...++. +++.++.++.|+++++..-. ...
T Consensus 125 ~~~~~-~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~----~~~ 197 (464)
T 3v7d_B 125 ITCLQ-FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGC----CTH 197 (464)
T ss_dssp EEEEE-EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTE----EEE
T ss_pred EEEEE-ECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCc----EEE
Confidence 45655 57888999987 2 3333122223 356789999998765 45555667899999985321 112
Q ss_pred ecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCccccee-------------------eeeE-ecCC
Q psy3725 497 KIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKR-------------------LHEV-ILPT 555 (760)
Q Consensus 497 kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk-------------------~kE~-~lP~ 555 (760)
.+.. ...+..++.....++. +|+++-. .-+|.+|.+......... ...+ ....
T Consensus 198 ~~~~h~~~v~~l~~~~~~~~~---~l~s~s~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (464)
T 3v7d_B 198 VFEGHNSTVRCLDIVEYKNIK---YIVTGSR---DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271 (464)
T ss_dssp EECCCSSCEEEEEEEESSSCE---EEEEEET---TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred EECCCCCccEEEEEecCCCCC---EEEEEcC---CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence 2221 2223333332222222 4444432 226777886533211000 0011 1233
Q ss_pred cceEEEEecCceEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEe-CCCeEEEEec-ceEE-EEc
Q psy3725 556 LAQCIHIFSEGRLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIEL-PRGEFLLVFH-SLAA-YVD 631 (760)
Q Consensus 556 ~~~sl~~~~~~~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l-~~~EfLLcy~-~~gv-fVD 631 (760)
.+.++..-++ .|.+|...| ..++|+. ++.....+. ....++..+.. +++.+|++-+ +-.| .-|
T Consensus 272 ~v~~~~~~~~-~l~~~~~d~~i~vwd~~-~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 338 (464)
T 3v7d_B 272 SVRTVSGHGN-IVVSGSYDNTLIVWDVA-QMKCLYILS-----------GHTDRIYSTIYDHERKRCISASMDTTIRIWD 338 (464)
T ss_dssp CEEEEEEETT-EEEEEETTSCEEEEETT-TTEEEEEEC-----------CCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred eEEEEcCCCC-EEEEEeCCCeEEEEECC-CCcEEEEec-----------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 4555555544 788887654 6777875 333222111 11233322222 2334444322 1112 223
Q ss_pred C-CCCcccccceecC-CCCcEEEeeCCeEEEEeC-CeeEEEECcCCcEEEEEecCCc---eecCCCCCEEEEecC
Q psy3725 632 S-QGHKSREKEIMYP-ALPTGASYMDGQLLIFSE-THVDVFNAESGDWLQTVNIRRA---LPLDTRGSLCFSLAN 700 (760)
Q Consensus 632 ~-~G~rsR~~~I~W~-~~P~~~ay~~PYLlvf~~-~~IEVr~i~tg~lVQtI~~~~i---r~L~s~G~l~l~s~~ 700 (760)
. .|+..+. +.-. ....++++...||+..+. ..|-|+++.++.....+..... -.+..+|.+.+++.+
T Consensus 339 ~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d 411 (464)
T 3v7d_B 339 LENGELMYT--LQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSE 411 (464)
T ss_dssp TTTTEEEEE--ECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEET
T ss_pred CCCCcEEEE--EeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEecC
Confidence 2 3433321 2222 223456677668777765 5799999999988877754432 223456666655543
No 153
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=88.33 E-value=6.9 Score=41.20 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=88.4
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCCCceEEc--CCC-CCeeEEEEecCCCeEEEEE--CCCCeEEEEECCCc
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRYVQIARV--GDT-KKIYQMDYIPEEQLLVVLA--GKQRYVRLVPVRAL 488 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~~~l~rv--~~~-k~V~QI~Vi~e~~lLlvLs--gk~r~L~l~~L~~L 488 (760)
...|.|.+.- ++..|+.|+. + +.....+..+ ... ..+..+...++..++++-. +.++.|+++++...
T Consensus 176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence 4457777743 4456888876 2 3333222233 222 3488999998755444431 45789999999765
Q ss_pred cCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCceE
Q psy3725 489 DGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRL 568 (760)
Q Consensus 489 ~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~L 568 (760)
..+ .....+....++..++. ...+. +|+++-.. .-.|.+|++...+.....+.++....++.++.|.+++.+
T Consensus 256 ~~~-~~~~~~~~~~~v~~~~~--s~~~~---~l~~~g~~--dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~ 327 (402)
T 2aq5_A 256 EEP-LSLQELDTSSGVLLPFF--DPDTN---IVYLCGKG--DSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGL 327 (402)
T ss_dssp SSC-SEEEECCCCSSCEEEEE--ETTTT---EEEEEETT--CSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGS
T ss_pred cCC-ceEEeccCCCceeEEEE--cCCCC---EEEEEEcC--CCeEEEEEecCCCcceEeecccccCCcccceEEeccccc
Confidence 431 11222333334443332 22333 45544421 226888998766544566777777889999999988655
Q ss_pred EEEEcCCeEEEEec
Q psy3725 569 CVGYQSGFSIYKFS 582 (760)
Q Consensus 569 cVG~~~gF~ivdl~ 582 (760)
.++......++++.
T Consensus 328 ~~s~~~~~~~~~l~ 341 (402)
T 2aq5_A 328 EVNKCEIARFYKLH 341 (402)
T ss_dssp CGGGTEEEEEEEEE
T ss_pred ceecceeEEEEEcC
Confidence 55433345677775
No 154
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=88.28 E-value=22 Score=35.48 Aligned_cols=243 Identities=12% Similarity=0.085 Sum_probs=121.5
Q ss_pred cCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcce-eecCcccceEEEEeeeeCCCccceEEEEEEecCCc
Q psy3725 452 VGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEW-VKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNS 530 (760)
Q Consensus 452 v~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~-~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~ 530 (760)
+.....+..+.+-++.+.|++.+..+..|.+|+++.-.+ .... ..+........++. ...+. +|+++... .
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--s~dg~---~l~~~~~~--~ 105 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG-ALTFAAESALPGSLTHIST--DHQGQ---FVFVGSYN--A 105 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC-CEEEEEEEECSSCCSEEEE--CTTSS---EEEEEETT--T
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCC-ceeeccccccCCCCcEEEE--cCCCC---EEEEEecC--C
Confidence 334567888999998888877776557899998852111 1111 11111112222222 22333 56666532 2
Q ss_pred eEEEEEEecCCcccceeeeeEecCCcceEEEEecCc-eEEEEE--cCCeEEEEecCCCCceeecCCCCCcccccccCCCC
Q psy3725 531 SQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG-RLCVGY--QSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVD 607 (760)
Q Consensus 531 ~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~-~LcVG~--~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~ 607 (760)
-.|.+|.+.. ....+....+.....+.++.|..++ .|.++. .....++++..++....+... .+.......
T Consensus 106 ~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~ 179 (343)
T 1ri6_A 106 GNVSVTRLED-GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA-----EVTTVEGAG 179 (343)
T ss_dssp TEEEEEEEET-TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-----EEECSTTCC
T ss_pred CeEEEEECCC-CccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc-----ccccCCCCC
Confidence 3577787742 2223445566667778889999876 477765 344778888632433221100 000001223
Q ss_pred ceEEEEeCCCeEEEEe---cceEEEEcC---CCCccccccee-cC------CCCcEEEeeC--CeEEEEe--CCeeEEEE
Q psy3725 608 ALLAIELPRGEFLLVF---HSLAAYVDS---QGHKSREKEIM-YP------ALPTGASYMD--GQLLIFS--ETHVDVFN 670 (760)
Q Consensus 608 pl~i~~l~~~EfLLcy---~~~gvfVD~---~G~rsR~~~I~-W~------~~P~~~ay~~--PYLlvf~--~~~IEVr~ 670 (760)
|..+.--+++.+|++- +..-...|. .|.......+. .+ ..|..++|.. .||++.. .+.|.|++
T Consensus 180 ~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d 259 (343)
T 1ri6_A 180 PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFS 259 (343)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEE
Confidence 3333323455555432 222222333 23322111111 11 1344577763 4887665 47899999
Q ss_pred Cc--CC--cEEEEEecCC-cee--cCCCCC-EEEEecCCccEEEEe
Q psy3725 671 AE--SG--DWLQTVNIRR-ALP--LDTRGS-LCFSLANDIPYVVYL 708 (760)
Q Consensus 671 i~--tg--~lVQtI~~~~-ir~--L~s~G~-l~l~s~~~~~~~~~~ 708 (760)
+. ++ ..++.++... +.- ...+|. |+++...+-.+.+|.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 260 VSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp ECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 98 33 5566665322 221 234666 555554434454553
No 155
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=87.74 E-value=36 Score=37.28 Aligned_cols=221 Identities=14% Similarity=0.170 Sum_probs=109.0
Q ss_pred CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccc--eEEEEeeeeCCCccceEEEEEEecCCce
Q psy3725 454 DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKG--CLSFTTGPLTHTRTQHCLALAVKRQNSS 531 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKg--c~~f~~g~~~~~~~~~~LcVAvKr~~~~ 531 (760)
....|..+.+-++.+.|++-++ ..|+++++..-..+......+....+ ...++......+. +|+++-. .-
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~~--~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~---~l~s~~~---dg 88 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPCG--KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ---YLCSGDE---SG 88 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEET--TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC---EEEEEET---TS
T ss_pred ccCceeEEEECCCCCEEEEecC--CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC---EEEEecC---CC
Confidence 3456899999999998888775 68999998633111012233433333 3333332211344 5555542 22
Q ss_pred EEEEEEecCCc----ccceeeeeEe-cCCcceEEEEecCc-eEEEEEcCC---eEEEEecCCCCcee-----------e-
Q psy3725 532 QIILYEITRTK----TRHKRLHEVI-LPTLAQCIHIFSEG-RLCVGYQSG---FSIYKFSQDNRPIP-----------L- 590 (760)
Q Consensus 532 ~Vl~ye~~~~k----~~fkk~kE~~-lP~~~~sl~~~~~~-~LcVG~~~g---F~ivdl~~~~~~~~-----------L- 590 (760)
.|.+|.+..++ ...+....+. .+.++.+|.|..++ .|++|.... -.++-.+ ...... +
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~ 167 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACH 167 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcceeeecCCccEEEEE
Confidence 67888874220 0123334444 46778888888776 444444331 1222221 111100 0
Q ss_pred cCCCCCc-cc-------------------ccccCCCC---ceEEEEeC-C-CeEEEEe--cceEEEEc-CCCCcccccce
Q psy3725 591 IHQDNPL-VS-------------------LLTYSPVD---ALLAIELP-R-GEFLLVF--HSLAAYVD-SQGHKSREKEI 642 (760)
Q Consensus 591 l~~~d~s-l~-------------------f~~~~~~~---pl~i~~l~-~-~EfLLcy--~~~gvfVD-~~G~rsR~~~I 642 (760)
++|+.+. +. ........ ++..+..+ + +.+|++- |..-...| ..|+..+...-
T Consensus 168 ~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 247 (615)
T 1pgu_A 168 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED 247 (615)
T ss_dssp ECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB
T ss_pred ECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecc
Confidence 1111110 00 00011223 44444443 3 4555532 22223334 34443322100
Q ss_pred ---ecCCCCcEEEee-CCeEEEEeC-CeeEEEECcCCcEEEEEecC
Q psy3725 643 ---MYPALPTGASYM-DGQLLIFSE-THVDVFNAESGDWLQTVNIR 683 (760)
Q Consensus 643 ---~W~~~P~~~ay~-~PYLlvf~~-~~IEVr~i~tg~lVQtI~~~ 683 (760)
.-.+...+++|. ..+|++... ..|.|+++.+++.++++...
T Consensus 248 ~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 248 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred cccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 222334456664 447776664 57999999999999998765
No 156
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=87.57 E-value=27 Score=35.72 Aligned_cols=255 Identities=12% Similarity=0.158 Sum_probs=128.2
Q ss_pred CCeeEEEEec-----CCCeEEEEEc-C------CCCC-Cce--EEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECC
Q psy3725 422 TKKIYQMDYI-----PKEQLLVVLA-G------KQRY-VQI--ARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVR 486 (760)
Q Consensus 422 ~~~i~Caa~~-----~~~rllvGTe-~------l~~~-~~l--~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~ 486 (760)
...|.|.+.. +++.|+-|.. + +... ..+ ..-+....|..+.+-++..+++.- +.++.|+++++.
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~-s~D~~i~lWd~~ 110 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASS-SLDAHIRLWDLE 110 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEE-ETTSEEEEEETT
T ss_pred CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEE-eCCCcEEEEECC
Confidence 4567777632 2335777776 2 2222 011 123456779999999887766554 457899999984
Q ss_pred CccCCCcceeecCcc-cceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEec-CCcceEEEEec
Q psy3725 487 ALDGDEVEWVKIPET-KGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVIL-PTLAQCIHIFS 564 (760)
Q Consensus 487 ~L~~~~~~~~kl~et-Kgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~l-P~~~~sl~~~~ 564 (760)
.-.. ...+... ..+..++ ....+. +|+++.. .-.|.+|.+...+. ...+.. ...+.++.|.+
T Consensus 111 ~~~~----~~~~~~~~~~~~~~~--~spdg~---~l~~g~~---dg~v~i~~~~~~~~----~~~~~~~~~~v~~~~~sp 174 (321)
T 3ow8_A 111 NGKQ----IKSIDAGPVDAWTLA--FSPDSQ---YLATGTH---VGKVNIFGVESGKK----EYSLDTRGKFILSIAYSP 174 (321)
T ss_dssp TTEE----EEEEECCTTCCCCEE--ECTTSS---EEEEECT---TSEEEEEETTTCSE----EEEEECSSSCEEEEEECT
T ss_pred CCCE----EEEEeCCCccEEEEE--ECCCCC---EEEEEcC---CCcEEEEEcCCCce----eEEecCCCceEEEEEECC
Confidence 3211 1111111 1111111 112233 4554432 23678888754432 222333 44578899998
Q ss_pred Cc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEe-CCCeEEEEec--ceEEEEcC-CCCccc
Q psy3725 565 EG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIEL-PRGEFLLVFH--SLAAYVDS-QGHKSR 638 (760)
Q Consensus 565 ~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l-~~~EfLLcy~--~~gvfVD~-~G~rsR 638 (760)
++ .|+.|...| ..++|+. ++.....+. ....|+..+.. +++.+|++-+ ..-..-|. .|....
T Consensus 175 dg~~lasg~~dg~i~iwd~~-~~~~~~~~~-----------~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~ 242 (321)
T 3ow8_A 175 DGKYLASGAIDGIINIFDIA-TGKLLHTLE-----------GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 242 (321)
T ss_dssp TSSEEEEEETTSCEEEEETT-TTEEEEEEC-----------CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE
T ss_pred CCCEEEEEcCCCeEEEEECC-CCcEEEEEc-----------ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE
Confidence 76 566677655 6677886 333322221 11223322233 2344554332 11122233 222221
Q ss_pred ccceecCCC-CcEEEee--CCeEEEEeC-CeeEEEECcCCcEEEEEecCC--cee--cCCCCCEEEEecCCccEEEE
Q psy3725 639 EKEIMYPAL-PTGASYM--DGQLLIFSE-THVDVFNAESGDWLQTVNIRR--ALP--LDTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 639 ~~~I~W~~~-P~~~ay~--~PYLlvf~~-~~IEVr~i~tg~lVQtI~~~~--ir~--L~s~G~l~l~s~~~~~~~~~ 707 (760)
.+.-... ..+++|. ..||+.-+. ..|-|+++.+++.++++.... +.- .+.+|..++....+-.+.++
T Consensus 243 --~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 243 --TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp --EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred --EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 1222222 2456664 347766664 579999999999999985433 222 23466655554444444444
No 157
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=87.30 E-value=26 Score=35.23 Aligned_cols=146 Identities=14% Similarity=0.170 Sum_probs=78.1
Q ss_pred CeeEEEEec-C----CCeEEEEEc-C------CCCCCceEEc-CCCCCeeEEEEec-CCCeEEEEECCCCeEEEEECCCc
Q psy3725 423 KKIYQMDYI-P----KEQLLVVLA-G------KQRYVQIARV-GDTKKIYQMDYIP-EEQLLVVLAGKQRYVRLVPVRAL 488 (760)
Q Consensus 423 ~~i~Caa~~-~----~~rllvGTe-~------l~~~~~l~rv-~~~k~V~QI~Vi~-e~~lLlvLsgk~r~L~l~~L~~L 488 (760)
..|.|.+.. + +..|+.|+. + +.....+..+ .....|..|...+ +.++++ .++.+..|+++++..-
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~ 148 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLL-SVSKDHALRLWNIQTD 148 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEE-EEETTSCEEEEETTTT
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEE-EEeCCCeEEEEEeecC
Confidence 446665532 2 224777877 2 3333223333 2567899999999 555554 4555789999998532
Q ss_pred cCCCcceeec---C-cccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCccc--ce----------------
Q psy3725 489 DGDEVEWVKI---P-ETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTR--HK---------------- 546 (760)
Q Consensus 489 ~~~~~~~~kl---~-etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~--fk---------------- 546 (760)
.. ...+ . ....+..++. ...+. +|+++-. .-.|.+|.+...+.. +.
T Consensus 149 ~~----~~~~~~~~~~~~~v~~~~~--~~~~~---~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (366)
T 3k26_A 149 TL----VAIFGGVEGHRDEVLSADY--DLLGE---KIMSCGM---DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 216 (366)
T ss_dssp EE----EEEECSTTSCSSCEEEEEE--CTTSS---EEEEEET---TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCC
T ss_pred eE----EEEecccccccCceeEEEE--CCCCC---EEEEecC---CCCEEEEECCCCccccccceeEEecCCCCcccccc
Confidence 11 1222 1 1222333332 22333 4554432 126788886533210 00
Q ss_pred ------eeeeE-ecCCcceEEEEecCceEEEEEcCC-eEEEEec
Q psy3725 547 ------RLHEV-ILPTLAQCIHIFSEGRLCVGYQSG-FSIYKFS 582 (760)
Q Consensus 547 ------k~kE~-~lP~~~~sl~~~~~~~LcVG~~~g-F~ivdl~ 582 (760)
.+... .....+.++.|.++ .|+.|...| ..++|+.
T Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~d~~i~~wd~~ 259 (366)
T 3k26_A 217 QKIHFPDFSTRDIHRNYVDCVRWLGD-LILSKSCENAIVCWKPG 259 (366)
T ss_dssp EEECCCSEEECSSCSSCCCEEEEETT-EEEEECSSSEEEEEEES
T ss_pred eeeccCccccccCCcceEEEEEEcCC-EEEEEecCCEEEEEeCC
Confidence 00000 14677889999965 888887655 6677775
No 158
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=87.06 E-value=31 Score=35.91 Aligned_cols=225 Identities=10% Similarity=0.105 Sum_probs=109.5
Q ss_pred eeEEEEecCCCeEEEEEc-C------CCCCCc-----eEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCC
Q psy3725 424 KIYQMDYIPKEQLLVVLA-G------KQRYVQ-----IARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGD 491 (760)
Q Consensus 424 ~i~Caa~~~~~rllvGTe-~------l~~~~~-----l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~ 491 (760)
.|+|.+...+++|+.|++ | +..+.. ....++...|+.|.+.++-+.|+.-+ .+..|+++++..-..
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs-~d~~i~iwd~~~~~~- 161 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS-KDICIKVWDLAQQVV- 161 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEE-
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe-CCCeEEEEECCCCcE-
Confidence 377777545667999988 2 222211 12235667899999999888776654 478999999843110
Q ss_pred CcceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecC-c-eE
Q psy3725 492 EVEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSE-G-RL 568 (760)
Q Consensus 492 ~~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~-~-~L 568 (760)
...+.. +..+..++. ...+. . +|+.+-. .-+|.+|.+...+.. ..+....-...+.++.|..+ + .|
T Consensus 162 ---~~~~~~h~~~V~~~~~--~~~~~-~-~l~s~s~---D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~l 230 (344)
T 4gqb_B 162 ---LSSYRAHAAQVTCVAA--SPHKD-S-VFLSCSE---DNRILLWDTRCPKPA-SQIGCSAPGYLPTSLAWHPQQSEVF 230 (344)
T ss_dssp ---EEEECCCSSCEEEEEE--CSSCT-T-EEEEEET---TSCEEEEETTSSSCE-EECC----CCCEEEEEECSSCTTEE
T ss_pred ---EEEEcCcCCceEEEEe--cCCCC-C-ceeeecc---cccccccccccccee-eeeecceeeccceeeeecCCCCcce
Confidence 122221 122222222 11121 1 3333321 116888987544321 11111112234678999864 2 45
Q ss_pred EEEEcCC-eEEEEecCCCCce-eecCCCCCcccccccCCCCceEEEEeC-CC-eEEEE-e-cceEEEEcCCCCcccccce
Q psy3725 569 CVGYQSG-FSIYKFSQDNRPI-PLIHQDNPLVSLLTYSPVDALLAIELP-RG-EFLLV-F-HSLAAYVDSQGHKSREKEI 642 (760)
Q Consensus 569 cVG~~~g-F~ivdl~~~~~~~-~Ll~~~d~sl~f~~~~~~~pl~i~~l~-~~-EfLLc-y-~~~gvfVD~~G~rsR~~~I 642 (760)
+.|...| ..++|+. ++... .+. ....++..+..+ ++ .||.. - |..-.+-|..... -+
T Consensus 231 ~sg~~dg~v~~wd~~-~~~~~~~~~------------~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~----~~ 293 (344)
T 4gqb_B 231 VFGDENGTVSLVDTK-STSCVLSSA------------VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE----LF 293 (344)
T ss_dssp EEEETTSEEEEEESC-C--CCEEEE------------CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE----EE
T ss_pred EEeccCCcEEEEECC-CCcEEEEEc------------CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc----EE
Confidence 6687765 6778886 33222 221 123344334443 23 34442 2 2222223443221 12
Q ss_pred ecCC---CCcEEEee--CCeEEEE--eCCeeEEEECcCCcEEE
Q psy3725 643 MYPA---LPTGASYM--DGQLLIF--SETHVDVFNAESGDWLQ 678 (760)
Q Consensus 643 ~W~~---~P~~~ay~--~PYLlvf--~~~~IEVr~i~tg~lVQ 678 (760)
...+ .-.+++|+ .++|++- .+..|-++++.+..+-+
T Consensus 294 ~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~~ 336 (344)
T 4gqb_B 294 RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPA 336 (344)
T ss_dssp EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-----
T ss_pred EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCCC
Confidence 2222 22456664 3577654 36788999988765443
No 159
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=87.00 E-value=29 Score=35.47 Aligned_cols=196 Identities=8% Similarity=0.086 Sum_probs=92.4
Q ss_pred CCeeEEEEecCCCeEEEEECCCCeEEEEECCCcc------CCC-cceeecCcccceEEEEeeeeCCCccceEEEEEEecC
Q psy3725 456 KKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALD------GDE-VEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQ 528 (760)
Q Consensus 456 k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~------~~~-~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~ 528 (760)
..|..+...+. ++-++.++.|+++..+.-. ... ...........+..++......+. +++.+-.
T Consensus 77 ~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~s~s~-- 147 (343)
T 3lrv_A 77 PNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTE---YFIWADN-- 147 (343)
T ss_dssp ECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CC---EEEEEET--
T ss_pred CCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCC---EEEEEeC--
Confidence 44555444444 3344557888888775311 111 111222222223333322211233 4443332
Q ss_pred CceEEEEEEecCCcccceeeeeEecCCcceEEEEecCce-EEEEEcCC-eEEEEecCCCCce-eecCCCCCcccccccCC
Q psy3725 529 NSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGR-LCVGYQSG-FSIYKFSQDNRPI-PLIHQDNPLVSLLTYSP 605 (760)
Q Consensus 529 ~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~-LcVG~~~g-F~ivdl~~~~~~~-~Ll~~~d~sl~f~~~~~ 605 (760)
.-+|.+|.+...+. ...........+.++.|.+++. |+.|...| ..++|+. ++... .-+. . ..
T Consensus 148 -dg~i~~wd~~~~~~--~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~-~~~~~~~~~~---------~-~h 213 (343)
T 3lrv_A 148 -RGTIGFQSYEDDSQ--YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS-SPDQASSRFP---------V-DE 213 (343)
T ss_dssp -TCCEEEEESSSSCE--EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS-CTTSCCEECC---------C-CT
T ss_pred -CCcEEEEECCCCcE--EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC-CCCCCccEEe---------c-cC
Confidence 22688898765442 1222234455688999998874 44566544 6788886 33222 1111 1 12
Q ss_pred CCceEEEEeC-CCeEEEEe-cceEEEEcC-CCCccccc-ceecCCCC---cEEEee--CCeEEEEe--CCeeEEEECcCC
Q psy3725 606 VDALLAIELP-RGEFLLVF-HSLAAYVDS-QGHKSREK-EIMYPALP---TGASYM--DGQLLIFS--ETHVDVFNAESG 674 (760)
Q Consensus 606 ~~pl~i~~l~-~~EfLLcy-~~~gvfVD~-~G~rsR~~-~I~W~~~P---~~~ay~--~PYLlvf~--~~~IEVr~i~tg 674 (760)
..++..+..+ ++.+|+.- +..-.+-|. .++..... .+.-...+ .+++|. ..||++.. ++.|.|++++++
T Consensus 214 ~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 214 EAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp TSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 3455555553 45566543 332222343 33322211 11111122 236665 35777744 788999999655
No 160
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=86.84 E-value=48 Score=37.80 Aligned_cols=232 Identities=11% Similarity=0.102 Sum_probs=121.1
Q ss_pred CCeeEEEEec-CC-CeEEEEEc-C------CCCC----Cce-EE-cCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECC
Q psy3725 422 TKKIYQMDYI-PK-EQLLVVLA-G------KQRY----VQI-AR-VGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVR 486 (760)
Q Consensus 422 ~~~i~Caa~~-~~-~rllvGTe-~------l~~~----~~l-~r-v~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~ 486 (760)
...|+|.+.. ++ +.|+-|.. + +... ... .+ .++...|..+.+.++.++|+.-+ .+..|+++++.
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs-~Dg~v~vwd~~ 460 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGS-WDGELRLWDLA 460 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETT
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEe-CCCcEEEEECC
Confidence 5668887742 23 34667766 2 2221 011 22 34667899999999888776644 47899999984
Q ss_pred CccCCCcceeecC-cccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeee--EecCCcceEEEEe
Q psy3725 487 ALDGDEVEWVKIP-ETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHE--VILPTLAQCIHIF 563 (760)
Q Consensus 487 ~L~~~~~~~~kl~-etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE--~~lP~~~~sl~~~ 563 (760)
.-.. ...+. .+..+..++. ...+. +|+.+-. .-+|.+|....... +. +.+ ......+.++.|.
T Consensus 461 ~~~~----~~~~~~h~~~v~~~~~--s~~~~---~l~s~s~---D~~i~iwd~~~~~~-~~-~~~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 461 AGVS----TRRFVGHTKDVLSVAF--SLDNR---QIVSASR---DRTIKLWNTLGECK-YT-ISEGGEGHRDWVSCVRFS 526 (694)
T ss_dssp TTEE----EEEEECCSSCEEEEEE--CTTSS---CEEEEET---TSCEEEECTTSCEE-EE-ECSSTTSCSSCEEEEEEC
T ss_pred CCcc----eeEEeCCCCCEEEEEE--eCCCC---EEEEEeC---CCEEEEEECCCCcc-ee-eccCCCCCCCcEEEEEEe
Confidence 3211 11221 1222222222 22233 3433322 22677887532210 00 100 0123457889998
Q ss_pred cCc---eEEEEEcC-CeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeC-CCeEEEEe--cceEEEEcC-CCC
Q psy3725 564 SEG---RLCVGYQS-GFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELP-RGEFLLVF--HSLAAYVDS-QGH 635 (760)
Q Consensus 564 ~~~---~LcVG~~~-gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~-~~EfLLcy--~~~gvfVD~-~G~ 635 (760)
.++ .|+.|... ...++|+. +......+. +...++..+..+ ++.+|+.- |..-.+-|. .|+
T Consensus 527 ~~~~~~~l~s~s~d~~v~vwd~~-~~~~~~~~~-----------~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 527 PNTLQPTIVSASWDKTVKVWNLS-NCKLRSTLA-----------GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp SCSSSCEEEEEETTSCEEEEETT-TCCEEEEEC-----------CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred CCCCcceEEEEeCCCeEEEEECC-CCcEEEEEc-----------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 753 46666654 47778886 332222111 123344444443 44555432 333333343 444
Q ss_pred cccccceecCCCCcEEEeeC--CeEEEEeCCeeEEEECcCCcEEEEEec
Q psy3725 636 KSREKEIMYPALPTGASYMD--GQLLIFSETHVDVFNAESGDWLQTVNI 682 (760)
Q Consensus 636 rsR~~~I~W~~~P~~~ay~~--PYLlvf~~~~IEVr~i~tg~lVQtI~~ 682 (760)
.... +.-.....+++|.. .+|.+-.++.|.|+++.++..++.+..
T Consensus 595 ~~~~--~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~ 641 (694)
T 3dm0_A 595 KLYS--LEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKV 641 (694)
T ss_dssp EEEC--CBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECC
T ss_pred eEEE--ecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcc
Confidence 3322 23233444566643 367777889999999999999998753
No 161
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=86.77 E-value=4 Score=38.26 Aligned_cols=48 Identities=8% Similarity=0.027 Sum_probs=29.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 87 IQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 87 i~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
|=|=-.|.+||-+.+..+..+++++++.++.+.+|.+|+..++.++++
T Consensus 60 VLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~ 107 (138)
T 3hnw_A 60 DMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAES 107 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455677777777777777777776666666666555444444433
No 162
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=86.72 E-value=28 Score=35.06 Aligned_cols=162 Identities=13% Similarity=0.183 Sum_probs=92.5
Q ss_pred EEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEcCCeEEEEecCCCCceeecCCC-CCcccccccCCCCceE
Q psy3725 532 QIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSGFSIYKFSQDNRPIPLIHQD-NPLVSLLTYSPVDALL 610 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~gF~ivdl~~~~~~~~Ll~~~-d~sl~f~~~~~~~pl~ 610 (760)
+|+.|.....+ ...+..|..+.+|.+..+|+|.|+...+..++|.. ++....+.... +.. ...|-.
T Consensus 36 ~i~~~d~~~~~-----~~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~-~g~~~~~~~~~~~~~-------~~~~~d 102 (297)
T 3g4e_A 36 KVCRWDSFTKQ-----VQRVTMDAPVSSVALRQSGGYVATIGTKFCALNWK-EQSAVVLATVDNDKK-------NNRFND 102 (297)
T ss_dssp EEEEEETTTCC-----EEEEECSSCEEEEEEBTTSSEEEEETTEEEEEETT-TTEEEEEEECCTTCS-------SEEEEE
T ss_pred EEEEEECCCCc-----EEEEeCCCceEEEEECCCCCEEEEECCeEEEEECC-CCcEEEEEecCCCCC-------CCCCCC
Confidence 67778754322 23456788999999999989999999889899986 34444443321 110 111222
Q ss_pred EEEeCCCeEEEEe------------cceEEE-EcCCCCcccccceecCCCCcEEEeeCC--eEEEEe--CCeeEEEEC--
Q psy3725 611 AIELPRGEFLLVF------------HSLAAY-VDSQGHKSREKEIMYPALPTGASYMDG--QLLIFS--ETHVDVFNA-- 671 (760)
Q Consensus 611 i~~l~~~EfLLcy------------~~~gvf-VD~~G~rsR~~~I~W~~~P~~~ay~~P--YLlvf~--~~~IEVr~i-- 671 (760)
+..-.++.+++.- ..-++| +|..|+..+.. .--..|..+++..- +|++.. .+.|-++++
T Consensus 103 i~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~ 180 (297)
T 3g4e_A 103 GKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF--DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDL 180 (297)
T ss_dssp EEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE--EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECT
T ss_pred EEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe--eccccccceEEcCCCCEEEEecCCCCcEEEEeccC
Confidence 2222355555432 123455 56666544321 11134677887642 677666 567888887
Q ss_pred cCCcEE--EEE-ecCC--ce----ecCCCCCEEEEecCCccEEEEe
Q psy3725 672 ESGDWL--QTV-NIRR--AL----PLDTRGSLCFSLANDIPYVVYL 708 (760)
Q Consensus 672 ~tg~lV--QtI-~~~~--ir----~L~s~G~l~l~s~~~~~~~~~~ 708 (760)
.+|.+. +.+ .... -. .+..+|.|+++....-++.+|.
T Consensus 181 ~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d 226 (297)
T 3g4e_A 181 QTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLD 226 (297)
T ss_dssp TTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEEC
T ss_pred CCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEc
Confidence 577653 222 2211 11 2347899999876544455553
No 163
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=86.66 E-value=31 Score=35.34 Aligned_cols=117 Identities=10% Similarity=0.107 Sum_probs=67.9
Q ss_pred CCCCeeEEEEec-CCCeEEEEECCCCeEEEEECCCccCCCcce----eec------CcccceEEEEeeeeCCCccceEEE
Q psy3725 454 DTKKIYQMDYIP-EEQLLVVLAGKQRYVRLVPVRALDGDEVEW----VKI------PETKGCLSFTTGPLTHTRTQHCLA 522 (760)
Q Consensus 454 ~~k~V~QI~Vi~-e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~----~kl------~etKgc~~f~~g~~~~~~~~~~Lc 522 (760)
+...|+.|.+.+ +.++|+. ++.+..|+++++..-....... ..+ .....+..++.... ++. +|+
T Consensus 42 h~~~v~~~~~s~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~---~l~ 116 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLS-GGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-DTG---MFT 116 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEE-EETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-CTT---CEE
T ss_pred cCCcEEEEEEecCCCCEEEE-EcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC-CCc---EEE
Confidence 567899999999 6665555 5557899999996543211000 000 01122222222111 222 344
Q ss_pred EEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCc----eEEEEEcCC-eEEEEec
Q psy3725 523 LAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG----RLCVGYQSG-FSIYKFS 582 (760)
Q Consensus 523 VAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~----~LcVG~~~g-F~ivdl~ 582 (760)
.+-. .-.|.+|.+... +....+..+..+.++.|...+ .|++|...| ..++|+.
T Consensus 117 s~~~---d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 117 SSSF---DKTLKVWDTNTL----QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp EEET---TSEEEEEETTTT----EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred EEeC---CCeEEEeeCCCC----ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 4432 227888987543 344567788889999998632 577777654 7778886
No 164
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=86.50 E-value=32 Score=35.38 Aligned_cols=214 Identities=11% Similarity=0.119 Sum_probs=106.2
Q ss_pred CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC-c-ceeecCc-ccceEEEEeeee--CCC---ccceEEEEEE
Q psy3725 454 DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE-V-EWVKIPE-TKGCLSFTTGPL--THT---RTQHCLALAV 525 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~-~-~~~kl~e-tKgc~~f~~g~~--~~~---~~~~~LcVAv 525 (760)
+...|+.|..-+ ++|+. ++.+..|+++++..-.... . ....+.. ...+..++.... .++ . +|+++-
T Consensus 15 h~~~i~~~~~~~--~~l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~---~l~s~~ 88 (397)
T 1sq9_A 15 HDADIFSVSACN--SFTVS-CSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC---LVATTS 88 (397)
T ss_dssp SSSCEEEEEECS--SEEEE-EETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE---EEEEEE
T ss_pred hhcCeEEEEecC--CeEEE-EcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc---EEEEEc
Confidence 456899999977 55444 4557899999996543111 0 1122222 223333332222 113 3 454443
Q ss_pred ecCCceEEEEEEecCCccc-ceeeeeEecC------CcceEEEEe----cCc-e-EEEEEcCC-eEEEEecCC-----CC
Q psy3725 526 KRQNSSQIILYEITRTKTR-HKRLHEVILP------TLAQCIHIF----SEG-R-LCVGYQSG-FSIYKFSQD-----NR 586 (760)
Q Consensus 526 Kr~~~~~Vl~ye~~~~k~~-fkk~kE~~lP------~~~~sl~~~----~~~-~-LcVG~~~g-F~ivdl~~~-----~~ 586 (760)
. .-.|.+|.+...+.. ......+... ..+.++.|. .++ . |++|...| ..++|+... ..
T Consensus 89 ~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 89 F---SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp T---TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred C---CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 2 125777886543311 0113344443 789999999 655 4 77777655 678888620 11
Q ss_pred ceeecCCCCCcccccc-----cCCCCceEEEEeCCCeEEEEe--cceEEEEcC-CCCcccccceec-------CCCCcEE
Q psy3725 587 PIPLIHQDNPLVSLLT-----YSPVDALLAIELPRGEFLLVF--HSLAAYVDS-QGHKSREKEIMY-------PALPTGA 651 (760)
Q Consensus 587 ~~~Ll~~~d~sl~f~~-----~~~~~pl~i~~l~~~EfLLcy--~~~gvfVD~-~G~rsR~~~I~W-------~~~P~~~ 651 (760)
... +.+ ...+.. .....++..+....+.+|++- |..-.+.|. .|+..+ .+.- .....++
T Consensus 166 ~~~-~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~h~~~~~~i~~i 239 (397)
T 1sq9_A 166 TLN-WSP---TLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLY--NFESQHSMINNSNSIRSV 239 (397)
T ss_dssp TTC-CCC---EEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEE--EEECCC---CCCCCEEEE
T ss_pred eee-ccC---cceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeE--EEeccccccccCCccceE
Confidence 111 000 000100 111223333333322233322 222223343 233221 2443 3444566
Q ss_pred Eee--CCeEEEEeC----CeeEEEECcCCcEEEEEec
Q psy3725 652 SYM--DGQLLIFSE----THVDVFNAESGDWLQTVNI 682 (760)
Q Consensus 652 ay~--~PYLlvf~~----~~IEVr~i~tg~lVQtI~~ 682 (760)
+|. ..||++-.. ..|-|+++.+++.++++..
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~ 276 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSV 276 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECB
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceecc
Confidence 664 346766665 4899999999999999865
No 165
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=86.37 E-value=4.5 Score=34.44 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 80 QSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 80 qsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
++-.+.=|..=+.++.|+...|..|.++..+.++++.....|.+|.++|+.|...-+.|++
T Consensus 12 E~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445567788999999999999999999999999999999999999887666655
No 166
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=86.14 E-value=2.9 Score=38.40 Aligned_cols=91 Identities=14% Similarity=0.111 Sum_probs=53.5
Q ss_pred EEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCC--CccceeeeeecccCCCCCCcceE
Q psy3725 300 VRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATK--KDIPCIFRITTSLMDPPGTKNHT 377 (760)
Q Consensus 300 ~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~--~dip~if~it~s~l~~~~~~~~l 377 (760)
+..|+.|+....++|+... ..... .....|++.+ .-.|.....++.+.... .+.++-|-|-... ...+|
T Consensus 29 k~r~f~l~~~~~~~w~~s~-~~~~~--~~~~~i~i~~-I~eIr~G~~s~~~~~~~~~~~~~~~FsIiy~~-----~~k~L 99 (131)
T 1mai_A 29 RERFYKLQEDCKTIWQESR-KVMRS--PESQLFSIED-IQEVRMGHRTEGLEKFARDIPEDRCFSIVFKD-----QRNTL 99 (131)
T ss_dssp EEEEEEECTTSSEEEECCC-CTTCC--TTTTEEEGGG-EEEEEESSCSHHHHHHCTTSCGGGEEEEEESS-----SCCCE
T ss_pred eeEEEEECCCCCEEEeCCc-CCCCC--CcCcEEEHhh-hHHHHCCCCCHHHHhhhhcCCccceEEEEECC-----CCceE
Confidence 6688888877767787421 00000 1123455532 23344333333322211 1357888886542 12589
Q ss_pred EEeeCCHHHHHHHHHHHHHHHH
Q psy3725 378 LMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 378 ~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
.|.|+|..+.+.|+..|..+..
T Consensus 100 dlvA~s~~e~~~Wv~gL~~L~~ 121 (131)
T 1mai_A 100 DLIAPSPADAQHWVQGLRKIIH 121 (131)
T ss_dssp EEECSSHHHHHHHHHHHHHHHC
T ss_pred EEEeCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999887765
No 167
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=85.99 E-value=7.9 Score=35.92 Aligned_cols=39 Identities=21% Similarity=0.505 Sum_probs=31.9
Q ss_pred CccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 355 KDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 355 ~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
.+.|..|.|+.+. -.++.+.|.|..|+++|+++|+.+..
T Consensus 88 ~~~~~aFeI~g~~------~~~i~v~~~s~eE~~~Wl~~L~~~i~ 126 (132)
T 1v61_A 88 EGSDCMFEITGST------VERIVVHCNNNQDFQEWMEQLNRLTK 126 (132)
T ss_dssp SSSCCCEEEECSS------SCEEEECCCCSHHHHHHHHHHHHHHT
T ss_pred ccCccEEEEecCC------CceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 3679999997332 25799999999999999999988754
No 168
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=85.72 E-value=2.6 Score=32.17 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
.-|.|.|..|..+-.++++.+..+.++.+|+++|++-+++
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999999999998864
No 169
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=85.62 E-value=32 Score=34.55 Aligned_cols=115 Identities=10% Similarity=0.025 Sum_probs=68.5
Q ss_pred CCCCeeEEEEecCC--CeEEEEECCCCeEEEEECCCccCCCcceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCc
Q psy3725 454 DTKKIYQMDYIPEE--QLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNS 530 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~--~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~ 530 (760)
+...|+.|.+-++. +-+++.++.+..|+++++..-.. .....+.. ...+..++. ...+. +|+++-. .
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~h~~~v~~~~~--~~~~~---~l~s~~~---d 107 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ--TIPKAQQMHTGPVLDVCW--SDDGS---KVFTASC---D 107 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC--EEEEEEEECSSCEEEEEE--CTTSS---EEEEEET---T
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc--eeEEEeccccCCEEEEEE--CcCCC---EEEEEcC---C
Confidence 45789999999986 55566666678999999853111 00112221 122333332 22333 4554432 2
Q ss_pred eEEEEEEecCCcccceeeeeEecCCcceEEEE--ecCc-eEEEEEcCC-eEEEEec
Q psy3725 531 SQIILYEITRTKTRHKRLHEVILPTLAQCIHI--FSEG-RLCVGYQSG-FSIYKFS 582 (760)
Q Consensus 531 ~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~--~~~~-~LcVG~~~g-F~ivdl~ 582 (760)
-.|.+|.+...+ ....+..+.++.++.| ..++ .|..|...| ..++|+.
T Consensus 108 g~v~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 159 (368)
T 3mmy_A 108 KTAKMWDLSSNQ----AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159 (368)
T ss_dssp SEEEEEETTTTE----EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS
T ss_pred CcEEEEEcCCCC----ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC
Confidence 278899876543 2234567888999999 5554 466676555 6777876
No 170
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=85.41 E-value=1.6 Score=36.29 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=10.4
Q ss_pred HhhhHHHH---HHHHHHHHh
Q psy3725 76 LLNLQSSL---NSEIQAKTQ 92 (760)
Q Consensus 76 ~l~lqsal---~~Ei~akq~ 92 (760)
.-+||-+| +.|||+|+.
T Consensus 21 i~eLq~~L~~K~eELr~kd~ 40 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDA 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55677776 455566555
No 171
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=85.26 E-value=0.59 Score=40.56 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=32.9
Q ss_pred CceeEEeeecCCcccCCCcccccccccCeeeecCCCcccccccccccC
Q psy3725 210 HHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVP 257 (760)
Q Consensus 210 ~H~F~~~~f~~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp 257 (760)
.|.+..... .+.+|+.|....-| -.|.|..|+|..|..|+..-+
T Consensus 37 ~H~L~L~~~-~~~~C~~C~~~~~~---~~Y~C~~C~f~lH~~Ca~~p~ 80 (89)
T 1v5n_A 37 EHELELTRV-QVYTCDKCEEEGTI---WSYHCDECDFDLHAKCALNED 80 (89)
T ss_dssp TSCEEEECC-SSCCCTTTSCCCCS---CEEECTTTCCCCCHHHHHCSS
T ss_pred CCccEEeeC-CCeEeCCCCCcCCC---cEEEcCCCCCeEcHHhcCCCC
Confidence 376665543 36789999986433 469999999999999986533
No 172
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=85.04 E-value=34 Score=34.34 Aligned_cols=208 Identities=12% Similarity=0.149 Sum_probs=105.1
Q ss_pred CCCCeeEEEEecCCCeEEEEECC---CCeEEEEECCCccCCCcc-eeecCcccceEEEEeeeeC-CCccceEEEEEEecC
Q psy3725 454 DTKKIYQMDYIPEEQLLVVLAGK---QRYVRLVPVRALDGDEVE-WVKIPETKGCLSFTTGPLT-HTRTQHCLALAVKRQ 528 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~~lLlvLsgk---~r~L~l~~L~~L~~~~~~-~~kl~etKgc~~f~~g~~~-~~~~~~~LcVAvKr~ 528 (760)
....|..|...++.+.+++.++. +..|+++++..- ... .........+..++..... ++. +|+++-.
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~---~l~~~~~-- 88 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG---DLKLLREIEKAKPIKCGTFGATSLQQR---YLATGDF-- 88 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS---SEEEEEEEEESSCEEEEECTTCCTTTC---CEEEEET--
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC---cccceeeecccCcEEEEEEcCCCCCCc---eEEEecC--
Confidence 55789999999988777777754 678999988431 111 1122223334433332221 023 4554432
Q ss_pred CceEEEEEEecCCcccceeeeeEe-cCCcceEEEEec------Cc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCccc
Q psy3725 529 NSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFS------EG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVS 599 (760)
Q Consensus 529 ~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~------~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~ 599 (760)
.-.|.+|.+...+. ....+. ....+.++.|.. ++ .|+.|...| ..++|+.........+.+..
T Consensus 89 -dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~---- 160 (357)
T 3i2n_A 89 -GGNLHIWNLEAPEM---PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ---- 160 (357)
T ss_dssp -TSCEEEECTTSCSS---CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT----
T ss_pred -CCeEEEEeCCCCCc---cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC----
Confidence 12688888764431 122232 456788887652 33 677777654 67788862221222222100
Q ss_pred ccccCCCCceEEEE----e-CCCeEEE-Eecc-eEEEEcCCCCcccccceecCCCCcEEEeeC-----CeEEEEe-CCee
Q psy3725 600 LLTYSPVDALLAIE----L-PRGEFLL-VFHS-LAAYVDSQGHKSREKEIMYPALPTGASYMD-----GQLLIFS-ETHV 666 (760)
Q Consensus 600 f~~~~~~~pl~i~~----l-~~~EfLL-cy~~-~gvfVD~~G~rsR~~~I~W~~~P~~~ay~~-----PYLlvf~-~~~I 666 (760)
.....++..+. . .++.+|+ +.++ .-...|....... ....-.....+++|.. .+|++-. +..|
T Consensus 161 ---~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 236 (357)
T 3i2n_A 161 ---GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKDISMNKLVATSLEGKF 236 (357)
T ss_dssp ---TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred ---CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee-eecCCCCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence 00112332222 1 2344443 3332 2233344332221 1233345556677763 4555554 5679
Q ss_pred EEEECcCCcEEEEEe
Q psy3725 667 DVFNAESGDWLQTVN 681 (760)
Q Consensus 667 EVr~i~tg~lVQtI~ 681 (760)
.|+++.++..++.+.
T Consensus 237 ~i~d~~~~~~~~~~~ 251 (357)
T 3i2n_A 237 HVFDMRTQHPTKGFA 251 (357)
T ss_dssp EEEEEEEEETTTEEE
T ss_pred EEEeCcCCCccccee
Confidence 999998876655543
No 173
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=84.93 E-value=6.4 Score=41.84 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=31.2
Q ss_pred ccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 356 DIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 356 dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
..+..|.|.... ..+++|.|.|..+|++|+.+|..++.
T Consensus 312 ~~~~~F~i~~~~------~~~~~l~a~s~~ek~~W~~~i~~~~~ 349 (354)
T 1dbh_A 312 EYKHAFEIILKD------ENSVIFSAKSAEEKNNWMAALISLQY 349 (354)
T ss_dssp SCCSEEEECCTT------SCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred ccCccEEEecCC------CCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 578999995321 25789999999999999999998864
No 174
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=84.68 E-value=38 Score=34.67 Aligned_cols=208 Identities=11% Similarity=0.095 Sum_probs=103.0
Q ss_pred CeeEEEEecCCCeEEEEECCCCeEEEEECCCccCC-Ccce-eec---------CcccceEEEEeeeeCCCccceEEEEEE
Q psy3725 457 KIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGD-EVEW-VKI---------PETKGCLSFTTGPLTHTRTQHCLALAV 525 (760)
Q Consensus 457 ~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~-~~~~-~kl---------~etKgc~~f~~g~~~~~~~~~~LcVAv 525 (760)
....+.+ +-+.|++....+..|.+|++..-... .... ... ....++|.++. ...+. +|+++-
T Consensus 101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--spdg~---~l~~~~ 173 (361)
T 3scy_A 101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI--TPDGK---YLLADD 173 (361)
T ss_dssp CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE--CTTSS---EEEEEE
T ss_pred CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE--CCCCC---EEEEEe
Confidence 4455555 45555555544567888887531000 0000 000 01122343433 23344 566655
Q ss_pred ecCCceEEEEEEecCCcc----c-cee-----eeeEecCCcceEEEEecCce-EEEEEc--CCeEEEEecCCCCceeecC
Q psy3725 526 KRQNSSQIILYEITRTKT----R-HKR-----LHEVILPTLAQCIHIFSEGR-LCVGYQ--SGFSIYKFSQDNRPIPLIH 592 (760)
Q Consensus 526 Kr~~~~~Vl~ye~~~~k~----~-fkk-----~kE~~lP~~~~sl~~~~~~~-LcVG~~--~gF~ivdl~~~~~~~~Ll~ 592 (760)
.. .-.|.+|.++.... . +.. ...+.....+..+.|.++|+ |.|+.. ....++++. ++....+..
T Consensus 174 ~~--~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~-~g~~~~~~~ 250 (361)
T 3scy_A 174 LG--TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA-DGMLDEIQT 250 (361)
T ss_dssp TT--TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE-TTEEEEEEE
T ss_pred CC--CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec-CCceEEeEE
Confidence 32 23677777654321 1 211 22233345578899998885 667663 346677876 333221110
Q ss_pred CCCCcccccccCCCCceEEEEeCCCeEEEEec-----ceEEE-Ec-CCCCcccccceecCCCCcEEEeeC--CeEEEEe-
Q psy3725 593 QDNPLVSLLTYSPVDALLAIELPRGEFLLVFH-----SLAAY-VD-SQGHKSREKEIMYPALPTGASYMD--GQLLIFS- 662 (760)
Q Consensus 593 ~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~-----~~gvf-VD-~~G~rsR~~~I~W~~~P~~~ay~~--PYLlvf~- 662 (760)
. .........|..+.--+++.+|++-+ ...+| +| ..|.......+.-...|..++|.. -||++..
T Consensus 251 ~-----~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~ 325 (361)
T 3scy_A 251 V-----AADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACR 325 (361)
T ss_dssp E-----ESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred E-----ecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEEC
Confidence 0 00000112232222224666765432 34455 45 346544333343356788999874 3888886
Q ss_pred -CCeeEEE--ECcCCcEEEE
Q psy3725 663 -ETHVDVF--NAESGDWLQT 679 (760)
Q Consensus 663 -~~~IEVr--~i~tg~lVQt 679 (760)
.+.|.|+ +..+|++.++
T Consensus 326 ~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 326 DTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp TTTEEEEEEECTTTCCEEEC
T ss_pred CCCCEEEEEEECCCCcEeec
Confidence 5679995 5568887664
No 175
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=84.62 E-value=15 Score=39.94 Aligned_cols=140 Identities=13% Similarity=0.163 Sum_probs=81.6
Q ss_pred eeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEE
Q psy3725 458 IYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYE 537 (760)
Q Consensus 458 V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye 537 (760)
|++|.. +.+.|++-. +..|++|++..+.... ....+. .+ .+.+ +.. .+ -++++. +.=+|++|.
T Consensus 90 V~~l~f--d~~~L~v~~--~~~l~v~dv~sl~~~~-~~~~~~--~~--v~~i-~~~-~p---~~av~~---~dG~L~v~d 152 (388)
T 1xip_A 90 VIFVCF--HGDQVLVST--RNALYSLDLEELSEFR-TVTSFE--KP--VFQL-KNV-NN---TLVILN---SVNDLSALD 152 (388)
T ss_dssp EEEEEE--ETTEEEEEE--SSEEEEEESSSTTCEE-EEEECS--SC--EEEE-EEC-SS---EEEEEE---TTSEEEEEE
T ss_pred eeEEEE--CCCEEEEEc--CCcEEEEEchhhhccC-ccceee--cc--eeeE-Eec-CC---CEEEEE---CCCCEEEEE
Confidence 999999 667766654 4799999998886422 111111 11 2222 111 11 133332 233788999
Q ss_pred ecCCcccceeeeeEecCCcceEEEEecCceEEEEEcCC-eEEEEecCCCC---ceeecCCCCCcccccccCCCCceEEEE
Q psy3725 538 ITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSG-FSIYKFSQDNR---PIPLIHQDNPLVSLLTYSPVDALLAIE 613 (760)
Q Consensus 538 ~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~g-F~ivdl~~~~~---~~~Ll~~~d~sl~f~~~~~~~pl~i~~ 613 (760)
+..... . .+...++|++|.+.| +.+|+..| ..+|+.++ .. ...+..|. .+.--...+.....+.-
T Consensus 153 l~~~~~--~-----~~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~-~~~~~k~~I~~Pp--~~~~~~~~~~~V~sI~w 221 (388)
T 1xip_A 153 LRTKST--K-----QLAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRN-GEMEKQFEFSLPS--ELEELPVEEYSPLSVTI 221 (388)
T ss_dssp TTTCCE--E-----EEEESEEEEEECSSE-EEEEETTSCEEEEEEET-TEEEEEEEECCCH--HHHTSCTTTSEEEEEEE
T ss_pred ccCCcc--c-----cccCCceEEEEcCCc-eEEEEcCCcEEEEcCCC-ccccccceecCCc--ccccccCCCeeEEEEEE
Confidence 764432 2 134578999999996 88999876 67777763 22 22343331 11000012355667778
Q ss_pred eCCCeEEEEecc
Q psy3725 614 LPRGEFLLVFHS 625 (760)
Q Consensus 614 l~~~EfLLcy~~ 625 (760)
++++.||++|..
T Consensus 222 l~~~~flv~y~~ 233 (388)
T 1xip_A 222 LSPQDFLAVFGN 233 (388)
T ss_dssp SSSSEEEEEEEC
T ss_pred ecCCeEEEEEcC
Confidence 889999999853
No 176
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=84.48 E-value=42 Score=35.05 Aligned_cols=128 Identities=9% Similarity=0.091 Sum_probs=67.6
Q ss_pred cCCcceEEEEecCc-eEEEEEcCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCC-C-eEEEEe--cceE
Q psy3725 553 LPTLAQCIHIFSEG-RLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPR-G-EFLLVF--HSLA 627 (760)
Q Consensus 553 lP~~~~sl~~~~~~-~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~-~-EfLLcy--~~~g 627 (760)
....+.++.|..++ .|+.|......++|+........+++..... + .....++..+...+ + .+|++- |..-
T Consensus 176 h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~--~--~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 176 HTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPAN--M--EELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSS--G--GGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred CCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeeccccc--c--cccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 45678899999876 5555644446777885212222222111000 1 11234454444433 3 455433 2222
Q ss_pred EEEcC-CCCcccc--cceecCC-------------CCcEEEeeC--CeEEEEeCCeeEEEECcC-CcEEEEEecCC
Q psy3725 628 AYVDS-QGHKSRE--KEIMYPA-------------LPTGASYMD--GQLLIFSETHVDVFNAES-GDWLQTVNIRR 684 (760)
Q Consensus 628 vfVD~-~G~rsR~--~~I~W~~-------------~P~~~ay~~--PYLlvf~~~~IEVr~i~t-g~lVQtI~~~~ 684 (760)
...|. .|..... ..+.-.. ...+++|.. .||++.....|.|+++.+ +..++++.+..
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCG
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccc
Confidence 33443 3433211 1122222 234566653 488888889999999997 89888886553
No 177
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=84.39 E-value=45 Score=35.30 Aligned_cols=144 Identities=7% Similarity=0.099 Sum_probs=78.9
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCCCceEEc-CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRYVQIARV-GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE 492 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~~~l~rv-~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~ 492 (760)
...|+|.+.- ++..|+-|.+ + +........+ ++...|..|.+.++.++|+. ++.+..|+++++.....
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~s-gs~D~~i~iwd~~~~~~-- 184 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS-CSADMTIKLWDFQGFEC-- 184 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEE-EETTSCCCEEETTSSCE--
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCce--
Confidence 4568888743 2345777776 2 2232122222 35578999999988776554 55678999999854321
Q ss_pred cceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEec-CCcceEEEEecCce-EE
Q psy3725 493 VEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVIL-PTLAQCIHIFSEGR-LC 569 (760)
Q Consensus 493 ~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~l-P~~~~sl~~~~~~~-Lc 569 (760)
...+.. ...+..++ ....+. +|+.+-. .-+|.+|.+..+. ..+.|.- ...+.++.|..++. |.
T Consensus 185 --~~~~~~h~~~V~~v~--~~p~~~---~l~s~s~---D~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~~~~g~~l~ 250 (410)
T 1vyh_C 185 --IRTMHGHDHNVSSVS--IMPNGD---HIVSASR---DKTIKMWEVQTGY----CVKTFTGHREWVRMVRPNQDGTLIA 250 (410)
T ss_dssp --EECCCCCSSCEEEEE--ECSSSS---EEEEEET---TSEEEEEETTTCC----EEEEEECCSSCEEEEEECTTSSEEE
T ss_pred --eEEEcCCCCCEEEEE--EeCCCC---EEEEEeC---CCeEEEEECCCCc----EEEEEeCCCccEEEEEECCCCCEEE
Confidence 112221 11222222 222233 4444432 2378899975433 2233332 45577888887764 44
Q ss_pred EEEcC-CeEEEEec
Q psy3725 570 VGYQS-GFSIYKFS 582 (760)
Q Consensus 570 VG~~~-gF~ivdl~ 582 (760)
.|... .-.++|+.
T Consensus 251 s~s~D~~v~vwd~~ 264 (410)
T 1vyh_C 251 SCSNDQTVRVWVVA 264 (410)
T ss_dssp EEETTSCEEEEETT
T ss_pred EEcCCCeEEEEECC
Confidence 55544 36677775
No 178
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=84.37 E-value=38 Score=34.39 Aligned_cols=144 Identities=13% Similarity=0.201 Sum_probs=85.6
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCCCceEEc-CCCCCeeEEEEecCCC-----eEEEEECCCCeEEEEECCC
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRYVQIARV-GDTKKIYQMDYIPEEQ-----LLVVLAGKQRYVRLVPVRA 487 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~~~l~rv-~~~k~V~QI~Vi~e~~-----lLlvLsgk~r~L~l~~L~~ 487 (760)
...|.|.+.- ++..|+-|+. + +... .+..+ +....|..+.+.+... .+++-++.+..|+++++..
T Consensus 107 ~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 185 (319)
T 3frx_A 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185 (319)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc
Confidence 4457777643 2345778877 2 3222 33333 3556799999988643 3455566688999999854
Q ss_pred ccCCCcceeecC-cccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCc
Q psy3725 488 LDGDEVEWVKIP-ETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG 566 (760)
Q Consensus 488 L~~~~~~~~kl~-etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~ 566 (760)
... ...+. ....+..++. ...+. +|+.+-. .-+|.+|.+... +.+..+..+.++.+++|.+++
T Consensus 186 ~~~----~~~~~~h~~~v~~~~~--sp~g~---~l~s~~~---dg~i~iwd~~~~----~~~~~~~~~~~v~~~~~sp~~ 249 (319)
T 3frx_A 186 FQI----EADFIGHNSNINTLTA--SPDGT---LIASAGK---DGEIMLWNLAAK----KAMYTLSAQDEVFSLAFSPNR 249 (319)
T ss_dssp TEE----EEEECCCCSCEEEEEE--CTTSS---EEEEEET---TCEEEEEETTTT----EEEEEEECCSCEEEEEECSSS
T ss_pred chh----heeecCCCCcEEEEEE--cCCCC---EEEEEeC---CCeEEEEECCCC----cEEEEecCCCcEEEEEEcCCC
Confidence 321 11111 1222332322 22333 4554432 227889997543 345567778899999999876
Q ss_pred -eEEEEEcCCeEEEEec
Q psy3725 567 -RLCVGYQSGFSIYKFS 582 (760)
Q Consensus 567 -~LcVG~~~gF~ivdl~ 582 (760)
.|..|...+..+++++
T Consensus 250 ~~la~~~~~~i~v~~~~ 266 (319)
T 3frx_A 250 YWLAAATATGIKVFSLD 266 (319)
T ss_dssp SEEEEEETTEEEEEEET
T ss_pred CEEEEEcCCCcEEEEeC
Confidence 5666777788888885
No 179
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=84.12 E-value=47 Score=35.29 Aligned_cols=122 Identities=14% Similarity=0.224 Sum_probs=68.5
Q ss_pred CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC--cc-eeec-CcccceEEEEeeeeCCCccceEEEEEEecC
Q psy3725 453 GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE--VE-WVKI-PETKGCLSFTTGPLTHTRTQHCLALAVKRQ 528 (760)
Q Consensus 453 ~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~--~~-~~kl-~etKgc~~f~~g~~~~~~~~~~LcVAvKr~ 528 (760)
++...|+.|...+...-+++.++.+..|+++++..-.... .. ...+ .....++.++.... ++. +++++-.
T Consensus 179 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~---~l~s~~~-- 252 (430)
T 2xyi_A 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HES---LFGSVAD-- 252 (430)
T ss_dssp CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTT---EEEEEET--
T ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCC---EEEEEeC--
Confidence 4566799999999877345556667899999996521110 00 1111 11223333333221 222 3433321
Q ss_pred CceEEEEEEecCCcccceeeeeE-ecCCcceEEEEecCc--eEEEEEcCC-eEEEEec
Q psy3725 529 NSSQIILYEITRTKTRHKRLHEV-ILPTLAQCIHIFSEG--RLCVGYQSG-FSIYKFS 582 (760)
Q Consensus 529 ~~~~Vl~ye~~~~k~~fkk~kE~-~lP~~~~sl~~~~~~--~LcVG~~~g-F~ivdl~ 582 (760)
.-.|.+|.+..... .+....+ .....+.+|.|.+++ .|++|...| ..++|+.
T Consensus 253 -dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~ 308 (430)
T 2xyi_A 253 -DQKLMIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308 (430)
T ss_dssp -TSEEEEEETTCSCS-SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred -CCeEEEEECCCCCC-CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCC
Confidence 23788999764321 1222333 346778999999765 366777655 7788886
No 180
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=84.02 E-value=7.2 Score=33.46 Aligned_cols=50 Identities=28% Similarity=0.382 Sum_probs=39.6
Q ss_pred hhhHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q psy3725 77 LNLQSSLNSE-------IQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLR 126 (760)
Q Consensus 77 l~lqsal~~E-------i~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~ 126 (760)
--||++|+.| |+.|+.+..=|+.++..+.+-++++.+.++++++...-++
T Consensus 7 a~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~ 63 (101)
T 1d7m_A 7 AGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3578888776 5666677777888899999999999999999988776554
No 181
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=83.77 E-value=15 Score=37.78 Aligned_cols=230 Identities=13% Similarity=0.129 Sum_probs=107.1
Q ss_pred CCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEE
Q psy3725 456 KKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQII 534 (760)
Q Consensus 456 k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl 534 (760)
.+|+.+.+-++.++|+. ++.+..|+++++..-.. . ....+.. ...+..++. ...+. +|+.+-. .-+|.
T Consensus 12 ~~v~~~~~s~~g~~l~~-~~~d~~i~iw~~~~~~~-~-~~~~~~~h~~~v~~~~~--s~~~~---~l~s~s~---d~~v~ 80 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVT-TTATNQVELYEQDGNGW-K-HARTFSDHDKIVTCVDW--APKSN---RIVTCSQ---DRNAY 80 (377)
T ss_dssp SCCSCCEECSSSSEEEC-CCSSSCBCEEEEETTEE-E-ECCCBCCCSSCEEEEEE--CTTTC---CEEEEET---TSSEE
T ss_pred CcEEEEEECCCCCEEEE-ecCCCEEEEEEccCCce-E-EEEEEecCCceEEEEEE--eCCCC---EEEEEeC---CCeEE
Confidence 57888899887775543 44568899988753210 0 0112221 122232322 22233 4554432 11578
Q ss_pred EEEecCCcccceeeee-EecCCcceEEEEecCc-eEEEEEcCC-eEEEEecCCCC----ceeecCCCCCcccccccCCCC
Q psy3725 535 LYEITRTKTRHKRLHE-VILPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFSQDNR----PIPLIHQDNPLVSLLTYSPVD 607 (760)
Q Consensus 535 ~ye~~~~k~~fkk~kE-~~lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~~~~~----~~~Ll~~~d~sl~f~~~~~~~ 607 (760)
+|.+..... ++.... ......+.++.|..++ .|++|...| ..++|+. +.. ...+.. ....
T Consensus 81 vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~-----------~h~~ 147 (377)
T 3dwl_C 81 VYEKRPDGT-WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFE-QENDWWVSKHLKR-----------PLRS 147 (377)
T ss_dssp EC------C-CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC------CCCCEEECS-----------SCCS
T ss_pred EEEcCCCCc-eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEEC-CcccceeeeEeec-----------ccCC
Confidence 888754431 112222 2346788999998765 677777655 5666775 222 112211 0223
Q ss_pred ceEEEEe-CCCeEEEEe--cceEEEEcCC-------------CCccccc----ceecCCCCcEEEeeC--CeEEEEe-CC
Q psy3725 608 ALLAIEL-PRGEFLLVF--HSLAAYVDSQ-------------GHKSREK----EIMYPALPTGASYMD--GQLLIFS-ET 664 (760)
Q Consensus 608 pl~i~~l-~~~EfLLcy--~~~gvfVD~~-------------G~rsR~~----~I~W~~~P~~~ay~~--PYLlvf~-~~ 664 (760)
++..+.. +++.+|++- |..-..-|.. |.+.+.. .+.-.+...+++|.. .||+.-+ +.
T Consensus 148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~ 227 (377)
T 3dwl_C 148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDS 227 (377)
T ss_dssp CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTT
T ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCC
Confidence 3333333 234444432 2222222321 1110111 111122234556643 4666665 45
Q ss_pred eeEEEECcCCcE----EEEEecCC--ceec--CCCCCEEEEecCCccEEEEeec
Q psy3725 665 HVDVFNAESGDW----LQTVNIRR--ALPL--DTRGSLCFSLANDIPYVVYLAN 710 (760)
Q Consensus 665 ~IEVr~i~tg~l----VQtI~~~~--ir~L--~s~G~l~l~s~~~~~~~~~~~~ 710 (760)
.|.|+++.+++. ++++.... +.-+ ..+|.+++.+.+ -..++|...
T Consensus 228 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~~~~~~ 280 (377)
T 3dwl_C 228 SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYN-YSPILLQGN 280 (377)
T ss_dssp EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESS-SSEEEECCC
T ss_pred cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcC-CcEEEEEeC
Confidence 899999999987 77775544 2222 246666655544 344444433
No 182
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=83.60 E-value=38 Score=33.79 Aligned_cols=226 Identities=13% Similarity=0.199 Sum_probs=117.6
Q ss_pred cCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCc
Q psy3725 452 VGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNS 530 (760)
Q Consensus 452 v~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~ 530 (760)
.++...|+.+.+.++.+.|+. ++.++.|+++++..- .. ...+.. ..++..++. ...+. +|+.+-. .
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s-~~~dg~i~iw~~~~~---~~-~~~~~~h~~~v~~~~~--~~~~~---~l~s~~~---d 86 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLAS-SSADKLIKIWGAYDG---KF-EKTISGHKLGISDVAW--SSDSN---LLVSASD---D 86 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTTC---CE-EEEECCCSSCEEEEEE--CTTSS---EEEEEET---T
T ss_pred cccCCcEEEEEECCCCCEEEE-eeCCCeEEEEeCCCc---cc-chhhccCCCceEEEEE--cCCCC---EEEEECC---C
Confidence 345678999999998876655 445789999987421 11 112221 223333332 22333 4554432 2
Q ss_pred eEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCC
Q psy3725 531 SQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVD 607 (760)
Q Consensus 531 ~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~ 607 (760)
-.|.+|.+...+ ....+. -...+.++.|.+++ .|+.|...| ..++|+. ++.....+. ....
T Consensus 87 ~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-----------~~~~ 150 (312)
T 4ery_A 87 KTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLP-----------AHSD 150 (312)
T ss_dssp SEEEEEETTTCC----EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TCCEEEEEC-----------CCSS
T ss_pred CEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCEEEEEec-----------CCCC
Confidence 278889875443 222333 34667889998765 556666544 6778886 333222111 1234
Q ss_pred ceEEEEeC-CCeEEEEe--cceEEEEcC-CCCcccccceecCCCCc-EEEee--CCeEEEEe-CCeeEEEECcCCcEEEE
Q psy3725 608 ALLAIELP-RGEFLLVF--HSLAAYVDS-QGHKSREKEIMYPALPT-GASYM--DGQLLIFS-ETHVDVFNAESGDWLQT 679 (760)
Q Consensus 608 pl~i~~l~-~~EfLLcy--~~~gvfVD~-~G~rsR~~~I~W~~~P~-~~ay~--~PYLlvf~-~~~IEVr~i~tg~lVQt 679 (760)
|+..+..+ ++.+|+.- |..-.+.|. .|+..+.. +.-...|. .++|. ..||++-. ++.|.|+++.++..++.
T Consensus 151 ~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 229 (312)
T 4ery_A 151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE
T ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE-eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 44444442 34454422 333333343 33322211 11122233 34443 34777666 56799999999999998
Q ss_pred EecCCc-------eecCCCCCEEEEecCCccEEEE
Q psy3725 680 VNIRRA-------LPLDTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 680 I~~~~i-------r~L~s~G~l~l~s~~~~~~~~~ 707 (760)
+.+..- .....+|..++.+.++-.+.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vw 264 (312)
T 4ery_A 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264 (312)
T ss_dssp ECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEE
T ss_pred EEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEE
Confidence 854331 1112345555544444444444
No 183
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.41 E-value=15 Score=33.28 Aligned_cols=55 Identities=22% Similarity=0.303 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHH----HHHHHH
Q psy3725 82 SLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDS----QLKELQ 136 (760)
Q Consensus 82 al~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~----e~~~l~ 136 (760)
-.+.|+..++.+..++...|-..-.+-----+.|.+.+.|..||.=|++ |+.+++
T Consensus 56 KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq 114 (119)
T 3ol1_A 56 KLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQ 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777766665555554556678889999999988765 555555
No 184
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=83.05 E-value=70 Score=36.43 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=39.0
Q ss_pred EEEEEEecCCceEEEEEEecCCc-ccceeeeeEecCCcceEEEEecCce-EEEEEcCCeEEEEecCCCCceee
Q psy3725 520 CLALAVKRQNSSQIILYEITRTK-TRHKRLHEVILPTLAQCIHIFSEGR-LCVGYQSGFSIYKFSQDNRPIPL 590 (760)
Q Consensus 520 ~LcVAvKr~~~~~Vl~ye~~~~k-~~fkk~kE~~lP~~~~sl~~~~~~~-LcVG~~~gF~ivdl~~~~~~~~L 590 (760)
+|+++... +|++|.+..+. ...+.+ ...+..+.++.|..+|+ |.++......++|+. ++....+
T Consensus 122 ~l~~~~~~----~i~~~d~~~~~~~~~~~l--~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~-~g~~~~~ 187 (741)
T 2ecf_A 122 RLLFPLGG----ELYLYDLKQEGKAAVRQL--THGEGFATDAKLSPKGGFVSFIRGRNLWVIDLA-SGRQMQL 187 (741)
T ss_dssp EEEEEETT----EEEEEESSSCSTTSCCBC--CCSSSCEEEEEECTTSSEEEEEETTEEEEEETT-TTEEEEC
T ss_pred EEEEEeCC----cEEEEECCCCCcceEEEc--ccCCcccccccCCCCCCEEEEEeCCcEEEEecC-CCCEEEe
Confidence 56655543 88899875441 011221 12346688899998874 777777767778886 3333333
No 185
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=82.47 E-value=44 Score=33.75 Aligned_cols=154 Identities=14% Similarity=0.168 Sum_probs=87.1
Q ss_pred EEEEEEecCCcccceeeeeEecC--CcceEEEEecCceEEEEEcC-CeEEEEecCCCCce-ee-cCCCCCcccccccCCC
Q psy3725 532 QIILYEITRTKTRHKRLHEVILP--TLAQCIHIFSEGRLCVGYQS-GFSIYKFSQDNRPI-PL-IHQDNPLVSLLTYSPV 606 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~kE~~lP--~~~~sl~~~~~~~LcVG~~~-gF~ivdl~~~~~~~-~L-l~~~d~sl~f~~~~~~ 606 (760)
.|+.|.. .+ +.+.++..+ ..+.+..++.+|++.|+... .-.++.++-+++.. .+ +... .... ..
T Consensus 57 ~V~~~d~-~G----~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~-~~~~-----~~ 125 (276)
T 3no2_A 57 GAKMITR-DG----RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETG-IERP-----HA 125 (276)
T ss_dssp EEEEECT-TS----CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCS-CSSG-----GG
T ss_pred CEEEECC-CC----CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC-CCcc-----cc
Confidence 5666664 22 345667666 46778889988888887654 34455443233322 11 1111 0000 01
Q ss_pred CceEEEEeCCCeEEEEe--cceEEEEcCCCCcccccceecCCCCcEEEeeC-C-eEEEEe-CCeeEEEECcCCcEEEEEe
Q psy3725 607 DALLAIELPRGEFLLVF--HSLAAYVDSQGHKSREKEIMYPALPTGASYMD-G-QLLIFS-ETHVDVFNAESGDWLQTVN 681 (760)
Q Consensus 607 ~pl~i~~l~~~EfLLcy--~~~gvfVD~~G~rsR~~~I~W~~~P~~~ay~~-P-YLlvf~-~~~IEVr~i~tg~lVQtI~ 681 (760)
.|..+....++.+|++. +..-+-+|..|+....... +..|.+++... . +|++-. .+.|-.++..||+++-.+.
T Consensus 126 ~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 126 QFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp SCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred cccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 12223345577777765 3445557888887655333 35677666653 2 343333 4469999999999999986
Q ss_pred cCCce----------ecCCCCCEEEEe
Q psy3725 682 IRRAL----------PLDTRGSLCFSL 698 (760)
Q Consensus 682 ~~~ir----------~L~s~G~l~l~s 698 (760)
...+. ++..+|.+|+++
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 204 ANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp GGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CCCCCCccccccccceEcCCCCEEEEe
Confidence 43221 234688888876
No 186
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=82.41 E-value=44 Score=33.64 Aligned_cols=196 Identities=13% Similarity=0.055 Sum_probs=98.9
Q ss_pred EEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecC
Q psy3725 461 MDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITR 540 (760)
Q Consensus 461 I~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~ 540 (760)
....++.+-|++....+..|+.|+... ........+. ....++. ...+. |.|+... .|+.|....
T Consensus 18 p~w~~~~~~l~~~d~~~~~i~~~d~~~---~~~~~~~~~~--~~~~i~~--~~dG~----l~v~~~~----~l~~~d~~~ 82 (297)
T 3g4e_A 18 PVWEEVSNSLLFVDIPAKKVCRWDSFT---KQVQRVTMDA--PVSSVAL--RQSGG----YVATIGT----KFCALNWKE 82 (297)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTT---CCEEEEECSS--CEEEEEE--BTTSS----EEEEETT----EEEEEETTT
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCC---CcEEEEeCCC--ceEEEEE--CCCCC----EEEEECC----eEEEEECCC
Confidence 334455565555554456777777632 1111122221 2222222 23343 4555554 788887643
Q ss_pred CcccceeeeeEec--C-CcceEEEEecCceEEEEEcC-----------CeEEEEecCCCCceeecCCCCCcccccccCCC
Q psy3725 541 TKTRHKRLHEVIL--P-TLAQCIHIFSEGRLCVGYQS-----------GFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPV 606 (760)
Q Consensus 541 ~k~~fkk~kE~~l--P-~~~~sl~~~~~~~LcVG~~~-----------gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~ 606 (760)
++ ++.+....- | ..+..+.+-++|+|.||... .-.++.++.++....+.. ...
T Consensus 83 g~--~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-----------~~~ 149 (297)
T 3g4e_A 83 QS--AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD-----------QVD 149 (297)
T ss_dssp TE--EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE-----------EES
T ss_pred Cc--EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee-----------ccc
Confidence 33 233322211 1 12566888888899998732 234555542222221111 111
Q ss_pred CceEEEEeCCCeEEEEecc--eEEE---Ec-CCCCcccccc-eec---CCCCcEEEeeC-CeEEEEe--CCeeEEEECcC
Q psy3725 607 DALLAIELPRGEFLLVFHS--LAAY---VD-SQGHKSREKE-IMY---PALPTGASYMD-GQLLIFS--ETHVDVFNAES 673 (760)
Q Consensus 607 ~pl~i~~l~~~EfLLcy~~--~gvf---VD-~~G~rsR~~~-I~W---~~~P~~~ay~~-PYLlvf~--~~~IEVr~i~t 673 (760)
.|-++.--.++..|.+-+. -.|+ +| ..|..+.... ... .+.|..+++.. -+|.+-. .+.|-+++..+
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 2333332335556654432 2233 34 4665442221 222 35788888854 3555543 56699999999
Q ss_pred CcEEEEEecCC
Q psy3725 674 GDWLQTVNIRR 684 (760)
Q Consensus 674 g~lVQtI~~~~ 684 (760)
|+++++|..+.
T Consensus 230 G~~~~~i~~p~ 240 (297)
T 3g4e_A 230 GKRLQTVKLPV 240 (297)
T ss_dssp CCEEEEEECSS
T ss_pred ceEEEEEECCC
Confidence 99999998764
No 187
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=82.35 E-value=3 Score=30.43 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=23.2
Q ss_pred HHHHHHHHH--Hhh-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 82 SLNSEIQAK--TQI-SEELSKTRSELIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 82 al~~Ei~ak--q~i-~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
||.+|+||- ... .|||. ++|++||..|++...|...+..|
T Consensus 4 alkselqalkkegfspeela-------aleselqalekklaalksklqal 46 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEELA-------ALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677663 222 46665 45666666666666655544443
No 188
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=82.24 E-value=10 Score=40.54 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=32.5
Q ss_pred cceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHH
Q psy3725 357 IPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRI 400 (760)
Q Consensus 357 ip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~ 400 (760)
.|+.|.|...... +....++|.|.|..+|++|+.+|.++...
T Consensus 278 ~~~~F~i~~~~~~--~~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 319 (354)
T 2rgn_B 278 DPCRFALTSRGPE--GGIQRYVLQAADPAISQAWIKHVAQILES 319 (354)
T ss_dssp CTTEEEEEEECSS--SCEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCC--CCceEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 4789999765321 22468999999999999999999877653
No 189
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.11 E-value=8.6 Score=42.56 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=24.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHhc
Q psy3725 12 FRVSDEKDARSYLQALTTKTTQELEYLKHA 41 (760)
Q Consensus 12 qwv~dek~ar~ylq~la~k~~~ele~lr~~ 41 (760)
+.+..++++..-|+.++.++.+.|+.++..
T Consensus 363 ~vl~G~~t~eeal~~~~~~i~~~l~~~~~~ 392 (471)
T 3mq9_A 363 NAASGRQTVDEALKDAQTRITAARDGLRAV 392 (471)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 455677788888999999999999888754
No 190
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=82.03 E-value=51 Score=35.50 Aligned_cols=150 Identities=15% Similarity=0.220 Sum_probs=84.0
Q ss_pred eEEEEEEecCCceEEEEEEecCCcccceeeeeEecCC-cceEEEEecC--ceEEEEEcCCeEEEEecCCCCceee-cCCC
Q psy3725 519 HCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPT-LAQCIHIFSE--GRLCVGYQSGFSIYKFSQDNRPIPL-IHQD 594 (760)
Q Consensus 519 ~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~-~~~sl~~~~~--~~LcVG~~~gF~ivdl~~~~~~~~L-l~~~ 594 (760)
.|+|+|... .|..|+..... .+++..-...-+ +|..|.+.++ |-+||..-. .++-++ ..| +.|+
T Consensus 55 ~~~~~~~~~----~v~lw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~v------~sla~spd 122 (356)
T 2w18_A 55 PCIITACED----VVSLWKALDAW-QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGN-LEIREI------RALFCSSD 122 (356)
T ss_dssp EEEEEEESS----EEEEEEESSSS-BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECS-SSEEEE------EEECC---
T ss_pred cEEEEeccc----eEEEcccCCCc-cceeeEEEeccCceeEEEEEcCcccceeeeeecc-ccccce------EEEEECCC
Confidence 489999987 99999987653 234544444444 5667777764 488988763 222222 222 3455
Q ss_pred CCccc-ccccCCCCceEEEEeCCCeEEEEe----cceEEEEcC--CCCcccccceecCCCCcEEEeeC-----CeEEE-E
Q psy3725 595 NPLVS-LLTYSPVDALLAIELPRGEFLLVF----HSLAAYVDS--QGHKSREKEIMYPALPTGASYMD-----GQLLI-F 661 (760)
Q Consensus 595 d~sl~-f~~~~~~~pl~i~~l~~~EfLLcy----~~~gvfVD~--~G~rsR~~~I~W~~~P~~~ay~~-----PYLlv-f 661 (760)
|.++. .+..++ +-..+..++.++++... +..--.++. .|+......++ +..-..++|.. ++|+. -
T Consensus 123 ~~~~~~~l~s~g-~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~-~~~v~~l~fs~~~g~~~~LaSgS 200 (356)
T 2w18_A 123 DESEKQVLLKSG-NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM-PPEETILTFAEVQGMQEALLGTT 200 (356)
T ss_dssp ---CCEEEEEEE-EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC-CCSSCEEEEEEEETSTTEEEEEE
T ss_pred ccccccEEEeCC-CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccC-CCceeeEEeeccCCCCceEEEec
Confidence 44432 111111 11445566777777762 544444443 46654332222 11122334433 56665 4
Q ss_pred eCCeeEEEECcCCcEEEEEec
Q psy3725 662 SETHVDVFNAESGDWLQTVNI 682 (760)
Q Consensus 662 ~~~~IEVr~i~tg~lVQtI~~ 682 (760)
.++.|-|+++.||++++++.+
T Consensus 201 ~D~TIkIWDl~TGk~l~tL~g 221 (356)
T 2w18_A 201 IMNNIVIWNLKTGQLLKKMHI 221 (356)
T ss_dssp TTSEEEEEETTTCCEEEEEEC
T ss_pred CCCcEEEEECCCCcEEEEEcC
Confidence 577899999999999999964
No 191
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=81.85 E-value=44 Score=33.36 Aligned_cols=207 Identities=12% Similarity=0.155 Sum_probs=105.5
Q ss_pred CCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccce
Q psy3725 467 EQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHK 546 (760)
Q Consensus 467 ~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fk 546 (760)
-+.+++....+..|+++++..-.. ....... .... .+.....+. +|.++-.. .-+|.+|.....+.
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~--~~~~~~~-~~~~---~~~~s~dg~---~l~~~~~~--~~~i~~~d~~~~~~--- 74 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEI--LNQITLG-YDFV---DTAITSDCS---NVVVTSDF--CQTLVQIETQLEPP--- 74 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCE--EEEEECC-CCEE---EEEECSSSC---EEEEEEST--TCEEEEEECSSSSC---
T ss_pred CCEEEEEecCCCeEEEEeCcccce--eeeEEcc-CCcc---eEEEcCCCC---EEEEEeCC--CCeEEEEECCCCce---
Confidence 455566565567899998743211 0111221 1222 222223344 56655532 33788888754432
Q ss_pred eeeeEecCCcceE-EEEecCce-EEEEEcC----CeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEE
Q psy3725 547 RLHEVILPTLAQC-IHIFSEGR-LCVGYQS----GFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFL 620 (760)
Q Consensus 547 k~kE~~lP~~~~s-l~~~~~~~-LcVG~~~----gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfL 620 (760)
....+.....+.. +.|..+|+ |.++... ...++|+. ++.....+.. ...|.++.--+++.+|
T Consensus 75 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~-~~~~~~~~~~-----------~~~~~~~~~spdg~~l 142 (331)
T 3u4y_A 75 KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL-KNKFISTIPI-----------PYDAVGIAISPNGNGL 142 (331)
T ss_dssp EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT-TTEEEEEEEC-----------CTTEEEEEECTTSSCE
T ss_pred eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC-CCCeEEEEEC-----------CCCccceEECCCCCEE
Confidence 1445566666667 99998775 5544444 35667775 3333222211 1223222222344433
Q ss_pred EE--ec--c-eEEE-EcCCCCcccc--cceecCCCCcEEEeeCC--eEEEEe--CCeeEEEECcCCcE---EEEEecCC-
Q psy3725 621 LV--FH--S-LAAY-VDSQGHKSRE--KEIMYPALPTGASYMDG--QLLIFS--ETHVDVFNAESGDW---LQTVNIRR- 684 (760)
Q Consensus 621 Lc--y~--~-~gvf-VD~~G~rsR~--~~I~W~~~P~~~ay~~P--YLlvf~--~~~IEVr~i~tg~l---VQtI~~~~- 684 (760)
+. .+ . ..+| ++..|..... ..+.=...|..+++..- ||++.. .+.|.|+++.++++ +++++...
T Consensus 143 ~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~ 222 (331)
T 3u4y_A 143 ILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNL 222 (331)
T ss_dssp EEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSC
T ss_pred EEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCC
Confidence 32 21 1 2233 3444443221 11222345777887643 777776 56799999999999 88886432
Q ss_pred ce--ecCCCCC-EEEEec
Q psy3725 685 AL--PLDTRGS-LCFSLA 699 (760)
Q Consensus 685 ir--~L~s~G~-l~l~s~ 699 (760)
+. -+..+|. +|++..
T Consensus 223 ~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 223 PGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp CCCEEECTTSSEEEEECS
T ss_pred CceEEECCCCCEEEEEEc
Confidence 21 2345777 665544
No 192
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=81.68 E-value=14 Score=36.44 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=30.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 91 TQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 91 q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
..+++|+++.+..+-.+..++++.|..|++|.+..-....-+++
T Consensus 91 ~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD 134 (189)
T 2v71_A 91 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLED 134 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 45667777888888888888888888888877765444333333
No 193
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=81.19 E-value=48 Score=33.27 Aligned_cols=223 Identities=12% Similarity=0.044 Sum_probs=111.2
Q ss_pred CCeeEEEEecCCCeEEEEECC------CCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCC
Q psy3725 456 KKIYQMDYIPEEQLLVVLAGK------QRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQN 529 (760)
Q Consensus 456 k~V~QI~Vi~e~~lLlvLsgk------~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~ 529 (760)
..+..+.+-++-+.+++-+.. +..|+++++..... ........ ..+.+++ ...+. .+.|+-..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~~--~~~~~~~--s~dg~---~l~v~~~~-- 109 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV--TQAIHNDL--KPFGATI--NNTTQ---TLWFGNTV-- 109 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE--EEEEEESS--CCCSEEE--ETTTT---EEEEEETT--
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE--EEEEecCC--CcceEEE--CCCCC---EEEEEecC--
Confidence 346677777777666655522 34677776643211 01111111 1111111 12233 45555532
Q ss_pred ceEEEEEEecCCcccceeeeeEecCC----------cceEEEEecCc-eEEEEEc---CCeEEEEecCCCCceeecC-CC
Q psy3725 530 SSQIILYEITRTKTRHKRLHEVILPT----------LAQCIHIFSEG-RLCVGYQ---SGFSIYKFSQDNRPIPLIH-QD 594 (760)
Q Consensus 530 ~~~Vl~ye~~~~k~~fkk~kE~~lP~----------~~~sl~~~~~~-~LcVG~~---~gF~ivdl~~~~~~~~Ll~-~~ 594 (760)
.-.|.+|.....+ ....+.++. .+..+.|..+| .|.++.. ....++|+. ++.....+. ..
T Consensus 110 ~~~v~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~ 184 (353)
T 3vgz_A 110 NSAVTAIDAKTGE----VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG-NIKLKTAIQNTG 184 (353)
T ss_dssp TTEEEEEETTTCC----EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT-TTEEEEEECCCC
T ss_pred CCEEEEEeCCCCe----eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC-CCceEEEecCCC
Confidence 2367788764332 234455533 36789998775 5777762 226677775 343333222 11
Q ss_pred CCcccccccCCCCceEEEEeCCCeEEEEec--ceEEEEcC-CCCcccccceec-----CCCCcEEEee--CCeEEEEeC-
Q psy3725 595 NPLVSLLTYSPVDALLAIELPRGEFLLVFH--SLAAYVDS-QGHKSREKEIMY-----PALPTGASYM--DGQLLIFSE- 663 (760)
Q Consensus 595 d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~--~~gvfVD~-~G~rsR~~~I~W-----~~~P~~~ay~--~PYLlvf~~- 663 (760)
. .|.++.--.++.+|.+-+ ..-..+|. .|+.... +.. ...|..+++. ..+|++...
T Consensus 185 ~-----------~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 185 K-----------MSTGLALDSEGKRLYTTNADGELITIDTADNKILSR--KKLLDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp T-----------TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEE--EECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred C-----------ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE--EEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence 1 111111112334333221 12223444 3332221 222 2345567776 347777764
Q ss_pred -CeeEEEECcCCcEEEEEecCCcee--cCCCCC-EEEEecCCccEEEE
Q psy3725 664 -THVDVFNAESGDWLQTVNIRRALP--LDTRGS-LCFSLANDIPYVVY 707 (760)
Q Consensus 664 -~~IEVr~i~tg~lVQtI~~~~ir~--L~s~G~-l~l~s~~~~~~~~~ 707 (760)
+.|-++++.+++.++.++.....- +..+|. +|++...+-.+.++
T Consensus 252 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 299 (353)
T 3vgz_A 252 AAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVI 299 (353)
T ss_dssp SSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEE
Confidence 689999999999999997654322 234565 67666544444444
No 194
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=80.94 E-value=52 Score=33.56 Aligned_cols=151 Identities=13% Similarity=0.056 Sum_probs=80.6
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCCC---ceEEc-CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCcc
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRYV---QIARV-GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALD 489 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~~---~l~rv-~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~ 489 (760)
...|.|.+.. ++..|+.|+. + +.... ....+ .....|..+.+.++.+.|++-+. ++.|+++++..-.
T Consensus 55 ~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~ 133 (377)
T 3dwl_C 55 DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG-ARVISVCYFEQEN 133 (377)
T ss_dssp SSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEES-SSCEEECCC----
T ss_pred CceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEec-CCeEEEEEECCcc
Confidence 4457777743 3445888876 2 22221 12322 35668999999998887766554 6889999885432
Q ss_pred CCCcceeecCc--ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCc--------------ccceeeeeEec
Q psy3725 490 GDEVEWVKIPE--TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTK--------------TRHKRLHEVIL 553 (760)
Q Consensus 490 ~~~~~~~kl~e--tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k--------------~~fkk~kE~~l 553 (760)
.... ...+.. ...+..++. ...+. +|+++-. .-+|.+|.+.... ...+...++..
T Consensus 134 ~~~~-~~~~~~~h~~~v~~~~~--~~~~~---~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (377)
T 3dwl_C 134 DWWV-SKHLKRPLRSTILSLDW--HPNNV---LLAAGCA---DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPS 204 (377)
T ss_dssp -CCC-CEEECSSCCSCEEEEEE--CTTSS---EEEEEES---SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCC
T ss_pred ccee-eeEeecccCCCeEEEEE--cCCCC---EEEEEeC---CCEEEEEEEEecccCCCccccccccccchhhhhhcccC
Confidence 1000 122222 222333332 22333 4555443 1257788863211 01223444555
Q ss_pred CCcceEEEEecCc-eEEEEEcCC-eEEEEec
Q psy3725 554 PTLAQCIHIFSEG-RLCVGYQSG-FSIYKFS 582 (760)
Q Consensus 554 P~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~ 582 (760)
...+.++.|.+++ .|+.|...| ..++|+.
T Consensus 205 ~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~ 235 (377)
T 3dwl_C 205 GGWVHAVGFSPSGNALAYAGHDSSVTIAYPS 235 (377)
T ss_dssp SSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred CceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 6779999999876 466677654 6677886
No 195
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=80.83 E-value=15 Score=39.73 Aligned_cols=105 Identities=10% Similarity=0.182 Sum_probs=59.2
Q ss_pred ceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceee
Q psy3725 282 AYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIF 361 (760)
Q Consensus 282 ~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if 361 (760)
..+|.+.+... .++.++..++.|-+.-|++-.... ........|+|. .+.|..+...+- .....|..|
T Consensus 235 i~~G~l~~~~~--~~~~~~~~~~fLF~d~Ll~~k~k~-----~~y~~k~~i~l~--~~~v~~~~~~~~---~~~~~~~~F 302 (406)
T 2vrw_B 235 KIDGELKITSV--ERRSKTDRYAFLLDKALLICKRRG-----DSYDLKASVNLH--SFQVRDDSSGER---DNKKWSHMF 302 (406)
T ss_dssp EEEEEEEEECS--SCCSCEEEEEEEESSEEEEEEEET-----TEEEEEEEEETT--TEEEEC-----------CTTCEEE
T ss_pred cccccEEEEec--CCCccceEEEEecCCEEEEEEecC-----CceEEEEEeccc--ceeeeecCCCCc---cCCccceee
Confidence 45787765432 223456666766666544443221 111223345552 244443322110 122468999
Q ss_pred eeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHhh
Q psy3725 362 RITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILKR 403 (760)
Q Consensus 362 ~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~~ 403 (760)
.|.... + ...+.|.|.|..+|++|+++|.++...++.
T Consensus 303 ~i~~~~---~--~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~ 339 (406)
T 2vrw_B 303 LLIEDQ---G--AQGYELFFKTRELKKKWMEQFEMAISNIYP 339 (406)
T ss_dssp EEEETT---C--SCEEEEEESSHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEecC---C--CceEEEeCCCHHHHHHHHHHHHHHHhhhhh
Confidence 996432 1 346899999999999999999999887653
No 196
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=80.69 E-value=54 Score=33.62 Aligned_cols=207 Identities=6% Similarity=0.027 Sum_probs=109.6
Q ss_pred eeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEE
Q psy3725 458 IYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYE 537 (760)
Q Consensus 458 V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye 537 (760)
...|.+- .+.+.+.+..+..|.+++...... ...++.....+.++... ++ .|.|+-.- .-.|.+|.
T Consensus 46 ~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~----~~~i~~~~~p~~i~~~~--~g----~lyv~~~~--~~~v~~iD 111 (328)
T 3dsm_A 46 AQSMVIR--DGIGWIVVNNSHVIFAIDINTFKE----VGRITGFTSPRYIHFLS--DE----KAYVTQIW--DYRIFIIN 111 (328)
T ss_dssp EEEEEEE--TTEEEEEEGGGTEEEEEETTTCCE----EEEEECCSSEEEEEEEE--TT----EEEEEEBS--CSEEEEEE
T ss_pred ceEEEEE--CCEEEEEEcCCCEEEEEECcccEE----EEEcCCCCCCcEEEEeC--CC----eEEEEECC--CCeEEEEE
Confidence 4455542 355555555457888888754321 12233334455554421 22 24555411 22677777
Q ss_pred ecCCcccceeeeeEecCC------cceEEEEecCceEEEEE---cCCeEEEEecCCCCceeecCCCCCcccccccCCCCc
Q psy3725 538 ITRTKTRHKRLHEVILPT------LAQCIHIFSEGRLCVGY---QSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDA 608 (760)
Q Consensus 538 ~~~~k~~fkk~kE~~lP~------~~~sl~~~~~~~LcVG~---~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~p 608 (760)
... .+..+.+.++. .|..|.+- +++|.|+. .....++|+. ++.....+.. ...|
T Consensus 112 ~~t----~~~~~~i~~g~~~~~~~~p~~i~~~-~~~lyv~~~~~~~~v~viD~~-t~~~~~~i~~-----------g~~p 174 (328)
T 3dsm_A 112 PKT----YEITGYIECPDMDMESGSTEQMVQY-GKYVYVNCWSYQNRILKIDTE-TDKVVDELTI-----------GIQP 174 (328)
T ss_dssp TTT----TEEEEEEECTTCCTTTCBCCCEEEE-TTEEEEEECTTCCEEEEEETT-TTEEEEEEEC-----------SSCB
T ss_pred CCC----CeEEEEEEcCCccccCCCcceEEEE-CCEEEEEcCCCCCEEEEEECC-CCeEEEEEEc-----------CCCc
Confidence 532 23445677777 77888884 55998885 3346677775 3333322211 1123
Q ss_pred eEEEEeCCCeEEEEec-c----------eEEE-EcCC-CCcccccceecC--CCCcEEEee--CCeEEEEeCCeeEEEEC
Q psy3725 609 LLAIELPRGEFLLVFH-S----------LAAY-VDSQ-GHKSREKEIMYP--ALPTGASYM--DGQLLIFSETHVDVFNA 671 (760)
Q Consensus 609 l~i~~l~~~EfLLcy~-~----------~gvf-VD~~-G~rsR~~~I~W~--~~P~~~ay~--~PYLlvf~~~~IEVr~i 671 (760)
..+.--.++.+++.-. . -.|| +|.. |+..+ .+.-+ ..|..+++. .-+|++... .|-+++.
T Consensus 175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~ 251 (328)
T 3dsm_A 175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPV 251 (328)
T ss_dssp CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEECCTTCCCEEEEECTTSCEEEEESS-SEEEEET
T ss_pred cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEecCCCCCceeEEEecCCCEEEEEcc-EEEEEEC
Confidence 2222223444443322 1 2333 4554 33332 23332 368999998 358887766 8889999
Q ss_pred cCCcEEEE--Ee--cCCcee--cC-CCCCEEEEe
Q psy3725 672 ESGDWLQT--VN--IRRALP--LD-TRGSLCFSL 698 (760)
Q Consensus 672 ~tg~lVQt--I~--~~~ir~--L~-s~G~l~l~s 698 (760)
.+++++.. ++ +....- ++ .+|.||++.
T Consensus 252 ~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 252 EADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp TCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred CCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence 99987532 32 122221 33 378899886
No 197
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=80.63 E-value=55 Score=33.62 Aligned_cols=147 Identities=14% Similarity=0.120 Sum_probs=82.1
Q ss_pred CCeeEEEEecC--CCeEEEEEc-C------CCCCCceEEcCC----CCCeeEEEEecCCCeEEEEECCCCeEEEEECCCc
Q psy3725 422 TKKIYQMDYIP--KEQLLVVLA-G------KQRYVQIARVGD----TKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRAL 488 (760)
Q Consensus 422 ~~~i~Caa~~~--~~rllvGTe-~------l~~~~~l~rv~~----~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L 488 (760)
...|.|.+... +..|+.|+. + +... .+..+.. ...|..+.+.++.+.+++ ++.+..|+++++.
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~-- 193 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLAT-GDSTGRLLLLGLD-- 193 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEE-EETTSEEEEEETT--
T ss_pred CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEE-ECCCCCEEEEECC--
Confidence 44577776322 234777776 2 3322 3333322 255999999998887665 4557899999983
Q ss_pred cCCCcceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEec-Cc
Q psy3725 489 DGDEVEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFS-EG 566 (760)
Q Consensus 489 ~~~~~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~-~~ 566 (760)
+.. ...+.. ...+..++.. ..+. . +|+++-. .-.|.+|.+...+........+.....+.++.|.+ ++
T Consensus 194 -~~~--~~~~~~h~~~v~~~~~~--~~~~-~-~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 263 (383)
T 3ei3_B 194 -GHE--IFKEKLHKAKVTHAEFN--PRCD-W-LMATSSV---DATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDS 263 (383)
T ss_dssp -SCE--EEEEECSSSCEEEEEEC--SSCT-T-EEEEEET---TSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTS
T ss_pred -CCE--EEEeccCCCcEEEEEEC--CCCC-C-EEEEEeC---CCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCC
Confidence 211 122221 2223333322 2222 1 3333321 22788999765332223344456788999999998 65
Q ss_pred -eEEEEEcC-CeEEEEec
Q psy3725 567 -RLCVGYQS-GFSIYKFS 582 (760)
Q Consensus 567 -~LcVG~~~-gF~ivdl~ 582 (760)
.|++|... ...++|+.
T Consensus 264 ~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 264 TKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp CEEEEEESSSEEEEEETT
T ss_pred CEEEEEcCCCcEEEEECC
Confidence 56666654 36777876
No 198
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=80.54 E-value=55 Score=33.60 Aligned_cols=256 Identities=10% Similarity=0.102 Sum_probs=130.7
Q ss_pred CCeeEEEEecCC--CeEEEEEc-C------CCCCCceEEc---CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCcc
Q psy3725 422 TKKIYQMDYIPK--EQLLVVLA-G------KQRYVQIARV---GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALD 489 (760)
Q Consensus 422 ~~~i~Caa~~~~--~rllvGTe-~------l~~~~~l~rv---~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~ 489 (760)
...|+|.+.... ..|+.|+. + +........+ +....|..+...+..+-+++.++.+..|+++++..
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-- 150 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-- 150 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS--
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC--
Confidence 567888875333 35888877 2 3332122222 36678999999995444445555678999999863
Q ss_pred CCCcceeecCcc--cceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCc
Q psy3725 490 GDEVEWVKIPET--KGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEG 566 (760)
Q Consensus 490 ~~~~~~~kl~et--Kgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~ 566 (760)
........... ..+..++. ...+. +|+++-. .-.|.+|.+. ++ ....+. ....+.+|.|.+++
T Consensus 151 -~~~~~~~~~~~~~~~v~~~~~--~~~~~---~l~~~~~---d~~i~i~d~~-~~----~~~~~~~h~~~v~~~~~~~~~ 216 (383)
T 3ei3_B 151 -SVIQVFAKTDSWDYWYCCVDV--SVSRQ---MLATGDS---TGRLLLLGLD-GH----EIFKEKLHKAKVTHAEFNPRC 216 (383)
T ss_dssp -CEEEEEECCCCSSCCEEEEEE--ETTTT---EEEEEET---TSEEEEEETT-SC----EEEEEECSSSCEEEEEECSSC
T ss_pred -CceEEEeccCCCCCCeEEEEE--CCCCC---EEEEECC---CCCEEEEECC-CC----EEEEeccCCCcEEEEEECCCC
Confidence 11111111110 11222222 23334 5555543 2378889873 22 223333 35778899999886
Q ss_pred e--EEEEEcCC-eEEEEecCC---CCceeecCCCCCcccccccCCCCceEEEEeC--CCeEEEEec--ceEEEEcC-CCC
Q psy3725 567 R--LCVGYQSG-FSIYKFSQD---NRPIPLIHQDNPLVSLLTYSPVDALLAIELP--RGEFLLVFH--SLAAYVDS-QGH 635 (760)
Q Consensus 567 ~--LcVG~~~g-F~ivdl~~~---~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~--~~EfLLcy~--~~gvfVD~-~G~ 635 (760)
. |+.|...| ..++|+... ......+ ....++..+..+ ++.+|++-. ..-...|. .|.
T Consensus 217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEM------------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE------------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred CCEEEEEeCCCEEEEEeCCCCCcccceEEEe------------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence 4 66676654 678888621 1111111 122344444442 345554332 22222333 333
Q ss_pred cccccc------eecCCCCcEEEee--CCeEE-EE---------eCCeeEEEECcCCcEEEEEecCC----cee--cCCC
Q psy3725 636 KSREKE------IMYPALPTGASYM--DGQLL-IF---------SETHVDVFNAESGDWLQTVNIRR----ALP--LDTR 691 (760)
Q Consensus 636 rsR~~~------I~W~~~P~~~ay~--~PYLl-vf---------~~~~IEVr~i~tg~lVQtI~~~~----ir~--L~s~ 691 (760)
...... ..+ ..|....|. .+++. +| .++.|.|+++.+|+.++++.+.. +.. .+.+
T Consensus 285 ~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~ 363 (383)
T 3ei3_B 285 KPDQIIIHPHRQFQH-LTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPT 363 (383)
T ss_dssp SCSEEEECCBCCCTT-SCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTT
T ss_pred ccccccccccccccc-ccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecC
Confidence 222110 011 122223332 23333 33 36789999999999999996533 222 2346
Q ss_pred CCEEEEecCCccEEEE
Q psy3725 692 GSLCFSLANDIPYVVY 707 (760)
Q Consensus 692 G~l~l~s~~~~~~~~~ 707 (760)
|.+++.+. +-.+.+|
T Consensus 364 g~~l~s~s-d~~i~iw 378 (383)
T 3ei3_B 364 GDVLASGM-GFNILIW 378 (383)
T ss_dssp SSEEEEEE-TTEEEEE
T ss_pred ccEEEEec-CCcEEEE
Confidence 66655443 3334333
No 199
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=80.22 E-value=3.8 Score=31.99 Aligned_cols=40 Identities=10% Similarity=0.224 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
+.+.+.|..|+++--|+++.|.++.+..+||++|.+-+++
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888889999999999999999999999999999875
No 200
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.73 E-value=8.5 Score=36.46 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 81 SSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 81 sal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
|.++++.++-..++.|+++.+..+...+-.|++-.+-++.|..|+..|.-++
T Consensus 61 s~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~ 112 (152)
T 3a7p_A 61 SHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIEN 112 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555444444444444444444444444444444333
No 201
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=79.53 E-value=61 Score=33.49 Aligned_cols=220 Identities=13% Similarity=0.146 Sum_probs=109.9
Q ss_pred CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEE
Q psy3725 454 DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQI 533 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~V 533 (760)
+...|..+.+-++.++|++=+ +..+++|++..... .... ...+....+. .-... .++++- ...-+|
T Consensus 18 h~~~V~~v~fs~dg~~la~g~--~~~~~iw~~~~~~~----~~~~-~~~~~~~~~~--~~~~~---~~~~~~--~~d~~v 83 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQSCLILST--LKSFEIYNVHPVAH----IMSQ-EMRHLSKVRM--LHRTN---YVAFVT--GVKEVV 83 (355)
T ss_dssp -CCCCCEEEECTTSSEEEEEC--SSEEEEEEETTEEE----EEEE-ECSCCCEEEE--CTTSS---EEEEEC--SSTTEE
T ss_pred CCCceEEEEECCCCCEEEEEc--CCEEEEEecCCcce----eeee-ecCCeEEEEE--cCCCC---EEEEEE--CCccEE
Confidence 345688888888777655433 34567777643211 0000 0112222211 11122 333222 112278
Q ss_pred EEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEcCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEE
Q psy3725 534 ILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIE 613 (760)
Q Consensus 534 l~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~ 613 (760)
.+|....+ +.+.++..+.++.++.|.++ .+.++......++|+........-+. . |..+..
T Consensus 84 ~iWd~~~~----~~~~~~~~~~~v~~v~~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~------------~--~~~~~~ 144 (355)
T 3vu4_A 84 HIWDDVKK----QDVSRIKVDAPVKDLFLSRE-FIVVSYGDVISVFKFGNPWKRITDDI------------R--FGGVCE 144 (355)
T ss_dssp EEEETTTT----EEEEEEECSSCEEEEEECSS-EEEEEETTEEEEEESSTTCCBSSCCE------------E--EEEEEE
T ss_pred EEEECCCC----cEEEEEECCCceEEEEEcCC-EEEEEEcCEEEEEECCCCceeeEEec------------c--CCceEE
Confidence 89997543 34557778999999999988 88888888888999862201111000 0 222222
Q ss_pred eCCCeEEEEe----cceEEEEcCC-CCcc------------c--ccceecCCCC-cEEEeeC--CeEEEEeCCe--eEEE
Q psy3725 614 LPRGEFLLVF----HSLAAYVDSQ-GHKS------------R--EKEIMYPALP-TGASYMD--GQLLIFSETH--VDVF 669 (760)
Q Consensus 614 l~~~EfLLcy----~~~gvfVD~~-G~rs------------R--~~~I~W~~~P-~~~ay~~--PYLlvf~~~~--IEVr 669 (760)
++. .+|.+- +..-...|.. |... . ...+.=...+ .+++|.. .||+.-+.++ |-|+
T Consensus 145 ~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 145 FSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF 223 (355)
T ss_dssp EET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred EEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 222 222221 1111112222 1100 0 0112222222 3455543 3677666654 9999
Q ss_pred ECcCCcEEEEEe-c-CC--ceec--CCCCCEEEEecCCccEEEE
Q psy3725 670 NAESGDWLQTVN-I-RR--ALPL--DTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 670 ~i~tg~lVQtI~-~-~~--ir~L--~s~G~l~l~s~~~~~~~~~ 707 (760)
++.+|+.++++. + .. +.-+ +.+|..++.+..+-.+-++
T Consensus 224 d~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 224 KTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF 267 (355)
T ss_dssp ETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEE
T ss_pred ECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEE
Confidence 999999999997 3 22 3322 3567766655544444444
No 202
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.24 E-value=12 Score=35.37 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=33.0
Q ss_pred HHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy3725 83 LNSEIQAKT----QISEELSKTRSELIAAQKEICDFRLKMESVSMD 124 (760)
Q Consensus 83 l~~Ei~akq----~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e 124 (760)
|+.|++.|. .+++|+.-.+.++-.+|.+++..++.|++|..-
T Consensus 87 Leeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 87 LKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555 788999888989889999999999888887643
No 203
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=78.67 E-value=34 Score=37.73 Aligned_cols=113 Identities=16% Similarity=0.243 Sum_probs=61.4
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
..++|.+..-. +....++..++.|-+.-|++-.....+. ........|+|.+ ..|..+...+.- ...-.++..
T Consensus 334 li~~G~l~~~~--~~~~~~~~r~~fLF~d~Ll~~k~~~~~~--~~~~~k~~i~l~~--~~v~~~~d~~~~-~~~~~~~~~ 406 (466)
T 2pz1_A 334 LIYSGELTRVT--QPQAKSQQRMFFLFDHQLIYCKKDLLRR--DVLYYKGRLDMDG--LEVVDLEDGKDR-DLHVSIKNA 406 (466)
T ss_dssp EEEEEEEEEEC--TTTCCEEEEEEEEETTEEEEEEECSSCT--TCEEEEEEEETTT--CEEEECCSBSCC-SSCCCBCEE
T ss_pred eEEeeeEEEEe--cCCCCeeEEEEEEECCEEEEEEeccccC--CceEEeeeeeccc--eEEEeCCCCccc-cccccccee
Confidence 34567764221 1112345556666555544433221111 1112344566633 444443322110 011246789
Q ss_pred eeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHhhcC
Q psy3725 361 FRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILKRNN 405 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~~~~ 405 (760)
|+|.... ....++|.|.|..+|++|+.+|.+++..++.+.
T Consensus 407 F~i~~~~-----~~~~~~l~a~s~~eK~~W~~~i~~a~~~~~~~~ 446 (466)
T 2pz1_A 407 FRLHRGA-----TGDSHLLCTRKPEQKQRWLKAFAREREQVQLDQ 446 (466)
T ss_dssp EEEECSS-----SCCEEEEEESSHHHHHHHHHHHHHHHHHHHTC-
T ss_pred EEEEeCC-----CCeEEEEEeCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 9996331 135788999999999999999999998877664
No 204
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=78.26 E-value=60 Score=32.72 Aligned_cols=161 Identities=14% Similarity=0.152 Sum_probs=92.3
Q ss_pred eEEEEEEecCCcccceeeeeEecCC--cceEEEEecCceEEEEEcCCeEEEEecCCCCceeecCCCCCcccccccCCCCc
Q psy3725 531 SQIILYEITRTKTRHKRLHEVILPT--LAQCIHIFSEGRLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDA 608 (760)
Q Consensus 531 ~~Vl~ye~~~~k~~fkk~kE~~lP~--~~~sl~~~~~~~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~p 608 (760)
-.|.+|....++ ...++..+. .+.++.+..+|+|.|....+...+|.+| +..--+... .....
T Consensus 15 ~~v~~~d~~tG~----~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~~G--~~~W~~~~~---------~~~~~ 79 (276)
T 3no2_A 15 NKIAIINKDTKE----IVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITRDG--RELWNIAAP---------AGCEM 79 (276)
T ss_dssp SEEEEEETTTTE----EEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECTTS--CEEEEEECC---------TTCEE
T ss_pred CEEEEEECCCCe----EEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECCCC--CEEEEEcCC---------CCccc
Confidence 356666643332 345566654 5788999999999996666666666632 222111110 01222
Q ss_pred eEEEEeCCCeEEEEec--c-eEEEEcCCCCcccccceecCC------CCcEEEee--CCeEEEEe-CCeeEEEECcCCcE
Q psy3725 609 LLAIELPRGEFLLVFH--S-LAAYVDSQGHKSREKEIMYPA------LPTGASYM--DGQLLIFS-ETHVDVFNAESGDW 676 (760)
Q Consensus 609 l~i~~l~~~EfLLcy~--~-~gvfVD~~G~rsR~~~I~W~~------~P~~~ay~--~PYLlvf~-~~~IEVr~i~tg~l 676 (760)
..+-.+.++.+|++-. + .-+-+|..|+..+...+ +.. .|..++.. .-||++.. .+.|-+++.+ |++
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~-~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEF-ETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEE-CCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEec-cCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 3455567888888742 2 33446889986654322 111 23333332 23666554 5678999988 999
Q ss_pred EEEEecCC---ceecCCCCCEEEEecCCccEEEEe
Q psy3725 677 LQTVNIRR---ALPLDTRGSLCFSLANDIPYVVYL 708 (760)
Q Consensus 677 VQtI~~~~---ir~L~s~G~l~l~s~~~~~~~~~~ 708 (760)
+-++.... --+...+|.++++....-+++.+.
T Consensus 158 ~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d 192 (276)
T 3no2_A 158 LNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLN 192 (276)
T ss_dssp EEEEECSSCCCEEEECTTSCEEEECBTTSEEEEEC
T ss_pred EEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEe
Confidence 99886532 224456888888766544554443
No 205
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=78.20 E-value=69 Score=33.34 Aligned_cols=150 Identities=8% Similarity=0.043 Sum_probs=78.7
Q ss_pred eEEEEe-cCCCeEEEEEc---C------CCCCCceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcc
Q psy3725 425 IYQMDY-IPKEQLLVVLA---G------KQRYVQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVE 494 (760)
Q Consensus 425 i~Caa~-~~~~rllvGTe---~------l~~~~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~ 494 (760)
+.|.+. .|+..+++|+- + +.....+..+.....|..|..-|+-++++.-++ ..++++... .+.. .
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~--~~~~~~~~~--~~~~-~ 210 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITG--SSLEVISTV--TGSC-I 210 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECS--SCEEEEETT--TCCE-E
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccc--eeEEEEEec--cCcc-e
Confidence 444442 35556888873 2 222223344455677999999999888877665 456666542 2211 1
Q ss_pred eeecCcccceEEEEeeeeCCCccceEEEEEEec-CCceEEEEEEecCCcccceeeeeEec-CCcceEEEEecCc-eEEEE
Q psy3725 495 WVKIPETKGCLSFTTGPLTHTRTQHCLALAVKR-QNSSQIILYEITRTKTRHKRLHEVIL-PTLAQCIHIFSEG-RLCVG 571 (760)
Q Consensus 495 ~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr-~~~~~Vl~ye~~~~k~~fkk~kE~~l-P~~~~sl~~~~~~-~LcVG 571 (760)
........+..+.++.....+. +++++-.. ...+.+..|............+.+.- ...+.+|+|.++| .|++|
T Consensus 211 ~~~~~~~~~~~v~~v~fspdg~---~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasg 287 (365)
T 4h5i_A 211 ARKTDFDKNWSLSKINFIADDT---VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLA 287 (365)
T ss_dssp EEECCCCTTEEEEEEEEEETTE---EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEE
T ss_pred eeeecCCCCCCEEEEEEcCCCC---EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEE
Confidence 1112222222232332223333 44444322 22456667776543322222333332 4568899999887 45667
Q ss_pred EcCC-eEEEEec
Q psy3725 572 YQSG-FSIYKFS 582 (760)
Q Consensus 572 ~~~g-F~ivdl~ 582 (760)
...+ -.++|+.
T Consensus 288 s~D~~V~iwd~~ 299 (365)
T 4h5i_A 288 SNDNSIALVKLK 299 (365)
T ss_dssp ETTSCEEEEETT
T ss_pred cCCCEEEEEECC
Confidence 7654 5677775
No 206
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=78.14 E-value=51 Score=35.01 Aligned_cols=203 Identities=12% Similarity=0.109 Sum_probs=99.4
Q ss_pred CCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEE
Q psy3725 455 TKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQI 533 (760)
Q Consensus 455 ~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~V 533 (760)
..+|+-|+.-|...-+|+..+.+..|+++++..-... ...++.. ...+..++.... ++. +|+.+-. .-+|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~--~~~~~~gH~~~V~~l~f~p~-~~~---~l~s~s~---D~~v 189 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP--TFIKGIGAGGSITGLKFNPL-NTN---QFYASSM---EGTT 189 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC--EEECCCSSSCCCCEEEECSS-CTT---EEEEECS---SSCE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce--eEEEccCCCCCEEEEEEeCC-CCC---EEEEEeC---CCEE
Confidence 3579999999866555555667889999988532211 1122211 112222222111 222 3443321 1267
Q ss_pred EEEEecCCcccceeeeeE-ecCCcceEEEEecCc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceE
Q psy3725 534 ILYEITRTKTRHKRLHEV-ILPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALL 610 (760)
Q Consensus 534 l~ye~~~~k~~fkk~kE~-~lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~ 610 (760)
.+|.+.... .+.+... .....+.++.|..++ .|++|...| ..++|+.+. ....+ .....++.
T Consensus 190 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~------------~~h~~~v~ 254 (435)
T 4e54_B 190 RLQDFKGNI--LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNL------------RMHKKKVT 254 (435)
T ss_dssp EEEETTSCE--EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCS------------BCCSSCEE
T ss_pred EEeeccCCc--eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEE------------ecccceEE
Confidence 888864322 1221111 223345678888765 566677655 567777531 11111 12234554
Q ss_pred EEEeC-CCe-EEEE-e-cceEEEEcC-CCCcccccceec-CCCC-cEEEee--CCeEEEEe-CCeeEEEECcCCcEEEEE
Q psy3725 611 AIELP-RGE-FLLV-F-HSLAAYVDS-QGHKSREKEIMY-PALP-TGASYM--DGQLLIFS-ETHVDVFNAESGDWLQTV 680 (760)
Q Consensus 611 i~~l~-~~E-fLLc-y-~~~gvfVD~-~G~rsR~~~I~W-~~~P-~~~ay~--~PYLlvf~-~~~IEVr~i~tg~lVQtI 680 (760)
.+... .++ +|.+ - |....+-|. .++......... ...| .+++|. ..||+.-+ ++.|-|+++.+++..+.+
T Consensus 255 ~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~ 334 (435)
T 4e54_B 255 HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL 334 (435)
T ss_dssp EEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred eeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence 44443 333 3432 2 222222233 222221111111 1222 344453 24777665 457999999999988877
Q ss_pred e
Q psy3725 681 N 681 (760)
Q Consensus 681 ~ 681 (760)
.
T Consensus 335 ~ 335 (435)
T 4e54_B 335 I 335 (435)
T ss_dssp C
T ss_pred e
Confidence 4
No 207
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=77.90 E-value=61 Score=32.60 Aligned_cols=236 Identities=10% Similarity=0.074 Sum_probs=117.7
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCC-CceE-Ec-CCCCCeeEEEEecC--CCeEEEEECCCCeEEEEECCCc
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRY-VQIA-RV-GDTKKIYQMDYIPE--EQLLVVLAGKQRYVRLVPVRAL 488 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~-~~l~-rv-~~~k~V~QI~Vi~e--~~lLlvLsgk~r~L~l~~L~~L 488 (760)
...|.|.+.- ++..|+.|+. + +... .... .+ ++...|+.|...+. .++|+. ++.+..|+++++..-
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~ 89 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILAS-CSYDGKVLIWKEENG 89 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTSCEEEEEEETT
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEE-eccCCEEEEEEcCCC
Confidence 4467887742 3456888876 3 2211 1222 22 35568999999866 455544 555789999987432
Q ss_pred cCCCcceeecC-cccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEec---
Q psy3725 489 DGDEVEWVKIP-ETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFS--- 564 (760)
Q Consensus 489 ~~~~~~~~kl~-etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~--- 564 (760)
.. .....+. ....+..++......+. +|+++-. .-.|.+|.+...... ....-...+..+.++.|.+
T Consensus 90 ~~--~~~~~~~~~~~~v~~~~~~~~~~~~---~l~~~~~---d~~i~v~d~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 90 RW--SQIAVHAVHSASVNSVQWAPHEYGP---LLLVASS---DGKVSVVEFKENGTT-SPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EE--EEEEEECCCSSCEEEEEECCGGGCS---EEEEEET---TSEEEEEECCTTSCC-CEEEEECCTTCEEEEEECCCC-
T ss_pred ce--eEeeeecCCCcceEEEEeCCCCCCC---EEEEecC---CCcEEEEecCCCCce-eeEEecCCCCceEEEEEcCccc
Confidence 10 0111221 12233333332221123 4444432 227888987654321 2222234467788999986
Q ss_pred -----------CceEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeC-C---CeEEEEec--ce
Q psy3725 565 -----------EGRLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELP-R---GEFLLVFH--SL 626 (760)
Q Consensus 565 -----------~~~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~-~---~EfLLcy~--~~ 626 (760)
...|++|...| ..++|+........+.. .......++..+..+ + +.+|++-+ ..
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~ 232 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES--------TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 232 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEE--------EECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEE--------EEecccCcEeEEEECCCCCCCCeEEEEeCCCE
Confidence 23677787655 67788862221111111 011123445444443 3 45555432 22
Q ss_pred EEEEcC-CCCcccc-cce---ecCCCCcEEEeeC--CeEEEEe-CCeeEEEECcCCc
Q psy3725 627 AAYVDS-QGHKSRE-KEI---MYPALPTGASYMD--GQLLIFS-ETHVDVFNAESGD 675 (760)
Q Consensus 627 gvfVD~-~G~rsR~-~~I---~W~~~P~~~ay~~--PYLlvf~-~~~IEVr~i~tg~ 675 (760)
-.+.|. .|..... ..+ .......+++|.. .||++.. +..|.|+++.++.
T Consensus 233 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 233 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 222332 2321111 111 2334445666643 4777655 5579999998653
No 208
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=77.88 E-value=72 Score=33.40 Aligned_cols=209 Identities=13% Similarity=0.131 Sum_probs=103.0
Q ss_pred CCCCeeEEEEec-CCCeEEEEECCCCeEEEEECCCccCCC-cc-eeecCcccceEEEEeeeeCCCccceEEEEEEecCCc
Q psy3725 454 DTKKIYQMDYIP-EEQLLVVLAGKQRYVRLVPVRALDGDE-VE-WVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNS 530 (760)
Q Consensus 454 ~~k~V~QI~Vi~-e~~lLlvLsgk~r~L~l~~L~~L~~~~-~~-~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~ 530 (760)
+...|+.|.+.+ +.++|+. ++.+..|+++++....... .. ...+.....+..++. ...+. +|+++-. .
T Consensus 62 h~~~V~~~~~s~~~~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~---~l~s~s~---d 132 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLIT-GSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITM--IPNFD---AFAVSSK---D 132 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEE-EETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEE--CTTSS---EEEEEET---T
T ss_pred CCCceEEEEECCCCCCEEEE-ecCCceEEEeECcccccCcccceeeeccCCCCEEEEEE--eCCCC---EEEEEeC---C
Confidence 357899999999 6666554 4557899999986643221 11 111122223333332 22333 4555543 1
Q ss_pred eEEEEEEec---CCcc----cceeeeeEe-----cCCcceEEEEe--cCc-eEEEEEcCC-eEEEEecCCCCceeecCCC
Q psy3725 531 SQIILYEIT---RTKT----RHKRLHEVI-----LPTLAQCIHIF--SEG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQD 594 (760)
Q Consensus 531 ~~Vl~ye~~---~~k~----~fkk~kE~~-----lP~~~~sl~~~--~~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~ 594 (760)
-+|.+|.+. .++. ....++.+. ....+.++.++ .++ .|+.|...| ..++|+. ++.....+..
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~- 210 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR-TLERLQIIEN- 210 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT-TCCEEEEEEC-
T ss_pred CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeeeEEEcc-
Confidence 267788763 1111 111233444 33456666655 222 677777655 6677886 3332211110
Q ss_pred CCcccccccCCCCceEEEEeC-CCeEEEEe--cceEEEEcC-CCCcccccceecCCC-C-cEEEeeC------CeEEEEe
Q psy3725 595 NPLVSLLTYSPVDALLAIELP-RGEFLLVF--HSLAAYVDS-QGHKSREKEIMYPAL-P-TGASYMD------GQLLIFS 662 (760)
Q Consensus 595 d~sl~f~~~~~~~pl~i~~l~-~~EfLLcy--~~~gvfVD~-~G~rsR~~~I~W~~~-P-~~~ay~~------PYLlvf~ 662 (760)
.....++..+..+ ++.+|++- |..-..-|. .|+..+. +..... | .++++.. .||++-.
T Consensus 211 --------~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~s~~~~~l~s~~ 280 (437)
T 3gre_A 211 --------SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRS--WSFGDHAPITHVEVCQFYGKNSVIVVGGS 280 (437)
T ss_dssp --------CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE--EBCTTCEEEEEEEECTTTCTTEEEEEEES
T ss_pred --------CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEE--EecCCCCceEEEEeccccCCCccEEEEEc
Confidence 0012344333332 44555432 222222332 2332221 211111 2 2333321 1666666
Q ss_pred CC-eeEEEECcCCcEEEEEecC
Q psy3725 663 ET-HVDVFNAESGDWLQTVNIR 683 (760)
Q Consensus 663 ~~-~IEVr~i~tg~lVQtI~~~ 683 (760)
.+ .|-|+++.+++.++++...
T Consensus 281 ~dg~i~iwd~~~~~~~~~~~~~ 302 (437)
T 3gre_A 281 SKTFLTIWNFVKGHCQYAFINS 302 (437)
T ss_dssp TTEEEEEEETTTTEEEEEEESS
T ss_pred CCCcEEEEEcCCCcEEEEEEcC
Confidence 55 4999999999999998644
No 209
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=77.79 E-value=12 Score=36.14 Aligned_cols=43 Identities=19% Similarity=0.294 Sum_probs=27.7
Q ss_pred HHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3725 74 MELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRL 116 (760)
Q Consensus 74 ~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~ 116 (760)
.+...||++|+.|.+++..-+|..+-....+-+++.+|...+.
T Consensus 69 ke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~ 111 (168)
T 3o0z_A 69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH 111 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999988877666555444444444444444333
No 210
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=77.72 E-value=76 Score=33.61 Aligned_cols=239 Identities=11% Similarity=0.111 Sum_probs=113.5
Q ss_pred cCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCC-C----cce-eecCc-ccceEEEEeeeeCCCccceEEEEE
Q psy3725 452 VGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGD-E----VEW-VKIPE-TKGCLSFTTGPLTHTRTQHCLALA 524 (760)
Q Consensus 452 v~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~-~----~~~-~kl~e-tKgc~~f~~g~~~~~~~~~~LcVA 524 (760)
+.....|..|.+.++.+-+++.++.+..|++|++...... . ... ..+.. ...+..++. ...+. . +|+++
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~-~-~l~s~ 200 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSW--NPNLN-G-YLLSA 200 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEE--CTTST-T-EEEEE
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEe--CCCCC-C-eEEEE
Confidence 4455679999999975555555666788999998652110 0 001 11111 111111222 11111 1 34433
Q ss_pred EecCCceEEEEEEecCCcc---cceeeeeE-ecCCcceEEEEec-Cc-eEEEEEcCC-eEEEEecCCC--CceeecCCCC
Q psy3725 525 VKRQNSSQIILYEITRTKT---RHKRLHEV-ILPTLAQCIHIFS-EG-RLCVGYQSG-FSIYKFSQDN--RPIPLIHQDN 595 (760)
Q Consensus 525 vKr~~~~~Vl~ye~~~~k~---~fkk~kE~-~lP~~~~sl~~~~-~~-~LcVG~~~g-F~ivdl~~~~--~~~~Ll~~~d 595 (760)
-. .-+|.+|.+..... .......+ .....+.++.|.. ++ .|+.|...| ..++|+.... .....+.
T Consensus 201 ~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~--- 274 (430)
T 2xyi_A 201 SD---DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD--- 274 (430)
T ss_dssp CT---TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE---
T ss_pred eC---CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee---
Confidence 21 22688898765221 11112223 3456788999986 32 555666544 6777886211 1111111
Q ss_pred CcccccccCCCCceEEEEe-CCCe-EEEE-e-cceEEEEcCCCCcccccceecCCC-CcEEEeeC--CeEEEE--eCCee
Q psy3725 596 PLVSLLTYSPVDALLAIEL-PRGE-FLLV-F-HSLAAYVDSQGHKSREKEIMYPAL-PTGASYMD--GQLLIF--SETHV 666 (760)
Q Consensus 596 ~sl~f~~~~~~~pl~i~~l-~~~E-fLLc-y-~~~gvfVD~~G~rsR~~~I~W~~~-P~~~ay~~--PYLlvf--~~~~I 666 (760)
....++..+.. ++++ +|++ - |..-...|.......-..+..... ..+++|.. +++++. .++.|
T Consensus 275 --------~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i 346 (430)
T 2xyi_A 275 --------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 346 (430)
T ss_dssp --------CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred --------cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcE
Confidence 12233333333 2344 3332 2 222233343221111123443333 34566643 454444 36789
Q ss_pred EEEECcC--------------CcEEEEEecCC--ceec--CCCCC-EEEEecCCccEEEEe
Q psy3725 667 DVFNAES--------------GDWLQTVNIRR--ALPL--DTRGS-LCFSLANDIPYVVYL 708 (760)
Q Consensus 667 EVr~i~t--------------g~lVQtI~~~~--ir~L--~s~G~-l~l~s~~~~~~~~~~ 708 (760)
-|+++.+ .+++.+..+.. ++-+ +.+|. +++++..+-.+.++.
T Consensus 347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp EEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred EEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 9999987 36676664432 4332 34565 555544444444443
No 211
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=77.51 E-value=28 Score=31.91 Aligned_cols=99 Identities=14% Similarity=0.138 Sum_probs=63.9
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
...|||+- ..+...+-|+|.|-+|+.+.|-+|-.+.+. .+...|.| .|.+.|......++++ ....|..
T Consensus 8 vlkeGW~V--H~t~~d~~rKRHYWrLD~K~Itlf~~e~~~------~~ykeIpL-~eIl~v~~~~~~~~l~--~~~~~hc 76 (125)
T 2coa_A 8 TLREGWVV--HYSNKDTLRKRHYWRLDCKCITLFQNNTTN------RYYKEIPL-SEILTVESAQNFSLVP--PGTNPHC 76 (125)
T ss_dssp CSEEEEEE--ECCSSSCCCEEEEEEECSSEEEEESSSSCS------SCSEEEET-TTCCEEEESCCCSSSC--TTSCCEE
T ss_pred eeecceEE--EEccCCccccceeeEecCCeEEEEecCCCC------ceeeeeeh-hHeecccccccccccC--CCCCCce
Confidence 45689972 122234679999999999999999764432 24567888 7788887765555543 3335688
Q ss_pred eeeecccCCCCCCcceEEEeeC-----------CHHHHHHHHHHHHHH
Q psy3725 361 FRITTSLMDPPGTKNHTLMLAD-----------SDTEKTKWVVALSEL 397 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~-----------S~~ek~kWv~~L~~~ 397 (760)
|.|.+..+. +++=++ .....+-|..+|..+
T Consensus 77 FEi~T~~~~-------yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqA 117 (125)
T 2coa_A 77 FEIVTANAT-------YFVGEMPGGTPGGPSGQGAEAARGWETAIRQA 117 (125)
T ss_dssp EEEECSSCC-------CCEECCSCCCSSSCCCCCSHHHHHHHHHHHHH
T ss_pred EEEEeCCeE-------EEEccCCCCCCCCcCccccHHHHHHHHHHHhh
Confidence 898766541 111110 125688899998665
No 212
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=77.34 E-value=5.3 Score=32.26 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 101 RSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 101 ~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
+.....++.++++.+++|.+|..+++.|+.|+..|+.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567888999999999999999999999887764
No 213
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=76.69 E-value=1.2e+02 Score=35.23 Aligned_cols=235 Identities=11% Similarity=0.082 Sum_probs=118.7
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCC-CceE-Ec-CCCCCeeEEEEecC--CCeEEEEECCCCeEEEEECCCc
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRY-VQIA-RV-GDTKKIYQMDYIPE--EQLLVVLAGKQRYVRLVPVRAL 488 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~-~~l~-rv-~~~k~V~QI~Vi~e--~~lLlvLsgk~r~L~l~~L~~L 488 (760)
...|+|.+.- ++..|+.|+. | +... .... .+ ++...|+.|...+. .+.++. ++.+..|+++++..-
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s-~s~Dg~I~vwd~~~~ 87 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILAS-CSYDGKVLIWKEENG 87 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEE-EETTSCEEEEEEETT
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEE-EeCCCeEEEEECCCC
Confidence 4467777742 3446888876 3 2211 1222 22 35668999999877 455544 555789999997432
Q ss_pred cCCCcceeecC-cccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEec---
Q psy3725 489 DGDEVEWVKIP-ETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFS--- 564 (760)
Q Consensus 489 ~~~~~~~~kl~-etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~--- 564 (760)
.. .....+. ....+..++......+. .++++.. .-+|.+|.+...... ....-...+..+.++.|.+
T Consensus 88 ~~--~~~~~~~~h~~~V~~v~~sp~~~~~---~l~sgs~---dg~I~vwdl~~~~~~-~~~~~~~~~~~v~~l~~~p~~~ 158 (753)
T 3jro_A 88 RW--SQIAVHAVHSASVNSVQWAPHEYGP---LLLVASS---DGKVSVVEFKENGTT-SPIIIDAHAIGVNSASWAPATI 158 (753)
T ss_dssp EE--EEEEEECCCSSCEEEEEECCGGGCS---EEEEEET---TSEEEEEECCSSSCC-CCEEEECCSSCEEEEEECCCC-
T ss_pred cc--cccccccCCCCCeEEEEECCCCCCC---EEEEEeC---CCcEEEEEeecCCCc-ceeEeecCCCceEEEEecCccc
Confidence 10 0111221 12223333332221133 4555443 227888987654221 1222234577889999986
Q ss_pred -----------CceEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeC-C---CeEEEEec--ce
Q psy3725 565 -----------EGRLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELP-R---GEFLLVFH--SL 626 (760)
Q Consensus 565 -----------~~~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~-~---~EfLLcy~--~~ 626 (760)
...|++|+..| ..++|+........+.. .......++..+..+ + +.+|++-+ ..
T Consensus 159 ~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--------~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~ 230 (753)
T 3jro_A 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES--------TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230 (753)
T ss_dssp --------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEE--------EECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred ccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeee--------eecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence 23788888766 67888863221111111 011223455444443 3 45665443 22
Q ss_pred EEEEcCC-CCcc-ccc---ceecCCCCcEEEeeC--CeEEEEe-CCeeEEEECcCC
Q psy3725 627 AAYVDSQ-GHKS-REK---EIMYPALPTGASYMD--GQLLIFS-ETHVDVFNAESG 674 (760)
Q Consensus 627 gvfVD~~-G~rs-R~~---~I~W~~~P~~~ay~~--PYLlvf~-~~~IEVr~i~tg 674 (760)
-.+-|.. |... ... .....+...+++|.. .||++-+ +..|-|+++.++
T Consensus 231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 2223332 2111 111 122344555667653 4666654 456999999864
No 214
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=76.65 E-value=1e+02 Score=34.47 Aligned_cols=203 Identities=10% Similarity=0.075 Sum_probs=100.2
Q ss_pred CCeeEEEEecCCCeEEEEECCCCeEEEEEC--CCccCCCcceeecCcccceEEEEeeeeC--CCccceEEEEEEecCCce
Q psy3725 456 KKIYQMDYIPEEQLLVVLAGKQRYVRLVPV--RALDGDEVEWVKIPETKGCLSFTTGPLT--HTRTQHCLALAVKRQNSS 531 (760)
Q Consensus 456 k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L--~~L~~~~~~~~kl~etKgc~~f~~g~~~--~~~~~~~LcVAvKr~~~~ 531 (760)
..++.+.+-++-+.|++-+. +..|+++++ ..+.. ...++-..+...++..... .+. +|+|+--..+
T Consensus 179 ~~~~~v~~spdg~~l~v~~~-d~~V~v~D~~~~t~~~----~~~i~~g~~p~~va~sp~~~~dg~---~l~v~~~~~~-- 248 (543)
T 1nir_A 179 YAVHISRMSASGRYLLVIGR-DARIDMIDLWAKEPTK----VAEIKIGIEARSVESSKFKGYEDR---YTIAGAYWPP-- 248 (543)
T ss_dssp TTEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCEE----EEEEECCSEEEEEEECCSTTCTTT---EEEEEEEESS--
T ss_pred cccceEEECCCCCEEEEECC-CCeEEEEECcCCCCcE----EEEEecCCCcceEEeCCCcCCCCC---EEEEEEccCC--
Confidence 34888889998888777664 589999999 33221 1223222233333332210 344 5666653223
Q ss_pred EEEEEEecCCcccceeeeeEec-----------CC-cceEEEEecCc-eEEEEEcCC--eEEEEecCCCCceeecCCCCC
Q psy3725 532 QIILYEITRTKTRHKRLHEVIL-----------PT-LAQCIHIFSEG-RLCVGYQSG--FSIYKFSQDNRPIPLIHQDNP 596 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~kE~~l-----------P~-~~~sl~~~~~~-~LcVG~~~g--F~ivdl~~~~~~~~Ll~~~d~ 596 (760)
+|.+|.... .+.++.+.+ |+ .+.+|.+..++ .+.|..... -.++|+. +.....
T Consensus 249 ~v~v~D~~t----~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~-~~~~l~------- 316 (543)
T 1nir_A 249 QFAIMDGET----LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK-DIDNLT------- 316 (543)
T ss_dssp EEEEEETTT----CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT-TSSSCE-------
T ss_pred eEEEEeccc----cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec-CCCcce-------
Confidence 667776432 234444544 22 45667777643 444433221 3334443 111100
Q ss_pred cccccccCCCCceEEEEeCCCeEEEEe---cceEEEEcC-CCCcccccceecCCCCc---EEEeeCC---eEEEEe---C
Q psy3725 597 LVSLLTYSPVDALLAIELPRGEFLLVF---HSLAAYVDS-QGHKSREKEIMYPALPT---GASYMDG---QLLIFS---E 663 (760)
Q Consensus 597 sl~f~~~~~~~pl~i~~l~~~EfLLcy---~~~gvfVD~-~G~rsR~~~I~W~~~P~---~~ay~~P---YLlvf~---~ 663 (760)
..... ....|..+.--+++.+|++= ++.-..+|. .|+.... +.=...|. .+.+..| ++++.. +
T Consensus 317 -~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~--i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d 392 (543)
T 1nir_A 317 -VTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL--VDVGKTPHPGRGANFVHPKYGPVWSTSHLGD 392 (543)
T ss_dssp -EEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE--EECSSSBCCTTCEEEEETTTEEEEEEEBSSS
T ss_pred -eEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEe--eccCCCCCCCCCcccCCCCCccEEEeccCCC
Confidence 00000 11223322222466666532 333344675 4443322 22122232 2333322 455543 5
Q ss_pred CeeEEEECcC-------CcEEEEEecCC
Q psy3725 664 THVDVFNAES-------GDWLQTVNIRR 684 (760)
Q Consensus 664 ~~IEVr~i~t-------g~lVQtI~~~~ 684 (760)
+.|-|+++.+ ++.||+|.+..
T Consensus 393 ~~V~v~d~~~~~~~~~~~~~v~~l~~~g 420 (543)
T 1nir_A 393 GSISLIGTDPKNHPQYAWKKVAELQGQG 420 (543)
T ss_dssp SEEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred ceEEEEEeCCCCCchhcCeEEEEEEcCC
Confidence 7999999999 89999997654
No 215
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=76.62 E-value=23 Score=38.36 Aligned_cols=112 Identities=16% Similarity=0.255 Sum_probs=60.2
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
..++|.+..-.. ....++..++.|-+.-|++-.....+. ........|+|.+ +.|..+...+. ......++..
T Consensus 257 Li~~G~l~~~~~--~~~k~~~r~~fLF~d~Ll~~k~~~~~~--~~~~~k~~i~l~~--~~v~~~~d~~~-~~~~~~~~~~ 329 (402)
T 2dfk_A 257 LIYTGEMAWIYQ--PYGRNQQRVFFLFDHQMVLCKKDLIRR--DILYYKGRIDMDK--YEVIDIEDGRD-DDFNVSMKNA 329 (402)
T ss_dssp EEEEEEEEEESS--TTCCCEEEEEEEETTEEEEEEECSSCT--TCEEEEEEEEGGG--EEEEECCSEEC-SSSCCEESSE
T ss_pred eEEeceEEEEec--cCCceEEEEEEeeCCEEEEEEeccccC--CceEEeeeeeccc--eEEEecCCCCc-ccccccccee
Confidence 346777643211 111245556666555544333221111 1112334566532 44444332211 0011245788
Q ss_pred eeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHhhc
Q psy3725 361 FRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILKRN 404 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~~~ 404 (760)
|+|.... ....++|.|+|..+|++|+.+|.+++..+++.
T Consensus 330 F~i~~~~-----~~~~~~l~a~s~~eK~~Wi~~i~~a~~~~~~~ 368 (402)
T 2dfk_A 330 FKLHNKE-----TEEVHLFFAKKLEEKIRWLRAFREERKMVQED 368 (402)
T ss_dssp EEEEESS-----SSCEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECC-----CCeEEEEEeCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9996432 13578899999999999999999988876554
No 216
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=76.33 E-value=15 Score=42.19 Aligned_cols=106 Identities=12% Similarity=0.219 Sum_probs=60.5
Q ss_pred ceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccceee
Q psy3725 282 AYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIF 361 (760)
Q Consensus 282 ~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~if 361 (760)
..+|.+.+... .++.++..++.|=+.-|++--... ........+.|. .+.|..+...| ......|+.|
T Consensus 407 l~~G~l~~~~~--~~~~~~~r~~fLF~d~Ll~~k~~~-----~~y~~k~~i~L~--~~~v~~~~~~~---~~~~~~~~~f 474 (587)
T 3ky9_A 407 KIDGELKITSV--ERRSKMDRYAFLLDKALLICKRRG-----DSYDLKDFVNLH--SFQVRDDSSGD---RDNKKWSHMF 474 (587)
T ss_dssp EEEEEEEEECS--SCCSCEEEEEEEETTEEEEEEEET-----TEEEEEEEEEGG--GEEEEEC--------CCCTTCEEE
T ss_pred EEEeeEEEEec--cCCCcceEEEEEECCEEEEEEecC-----CEEEeeeeechh--hceeeecCCCC---ccccccccee
Confidence 45788765432 224455666666666544332221 112234455553 24554433222 1123478999
Q ss_pred eeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHhhc
Q psy3725 362 RITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILKRN 404 (760)
Q Consensus 362 ~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~~~ 404 (760)
.|.... + ..++.|.|+|..+|++|+.+|+.+...+...
T Consensus 475 ~i~~~~----~-~~~~~L~A~S~eeK~~Wi~~I~~ai~~~~~~ 512 (587)
T 3ky9_A 475 LLIEDQ----G-AQGYELFFKTRELKKKWMEQFEMAISNIYPE 512 (587)
T ss_dssp EEEETT----C----CEEEESSHHHHHHHHHHHHHHHHHHSCT
T ss_pred EEEEcC----C-CceEEEEeCCHHHHHHHHHHHHHHhhhhccc
Confidence 997532 1 2568999999999999999999999876543
No 217
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=76.23 E-value=11 Score=35.71 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=53.6
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcE-EEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCccce
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFK-LFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPC 359 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~k-L~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~ 359 (760)
-...|+|..-+ | --|+++|++|.+.- |+++|- .... .-..|.+ +....|.... +.
T Consensus 52 Ilk~G~v~Krk--G--l~~kkR~liLT~~PrL~Yvdp-~~~~------~KGeIpl-s~~l~ve~k~------------~~ 107 (151)
T 1w1g_A 52 ILKMGPVDKRK--G--LFARRRQLLLTEGPHLYYVDP-VNKV------LKGEIPW-SQELRPEAKN------------FK 107 (151)
T ss_dssp EEEEEEEEEEE--T--TEEEEEEEEEETTTEEEEEET-TTTE------EEEEECC-CTTCEEEESS------------SS
T ss_pred EEEEEEEEecc--c--CcceeEEEEEcCCceEEEEcC-cccc------ccceEec-CCCeeEEEcC------------CC
Confidence 35677774321 2 33999999998654 444443 2221 2334555 3444443322 23
Q ss_pred eeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHh
Q psy3725 360 IFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILK 402 (760)
Q Consensus 360 if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~ 402 (760)
.|-|. .|+ .+++|-| +...+++|+.+|+++++...
T Consensus 108 ~F~I~-----Tp~--RtY~~~d-~~~~AqeWv~aI~~~~~~~~ 142 (151)
T 1w1g_A 108 TFFVH-----TPN--RTYYLMD-PSGNAHKWCRKIQEVWRQRY 142 (151)
T ss_dssp EEEEE-----ETT--EEEEEEC-TTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEE-----CCC--ceEEEEc-CccCHHHHHHHHHHHHHHHh
Confidence 77774 233 4556555 58999999999999988644
No 218
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=76.12 E-value=22 Score=37.85 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.6
Q ss_pred ceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 375 NHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 375 ~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
..+.|.|.|..+|++|+.+|+++..
T Consensus 342 ~~~~l~a~s~~ek~~W~~~i~~ai~ 366 (368)
T 1xcg_A 342 QIYELVALTSSDKNTWMELLEEAVR 366 (368)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 5789999999999999999998864
No 219
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=76.07 E-value=83 Score=33.19 Aligned_cols=114 Identities=10% Similarity=0.138 Sum_probs=66.3
Q ss_pred cCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCc
Q psy3725 452 VGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNS 530 (760)
Q Consensus 452 v~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~ 530 (760)
.++...|+.+.+-|+.++++.-+ .+..|+++++..-.. ...+.. +..+..++. ...+. +|+.+-. .
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~s~s-~Dg~i~vwd~~~~~~----~~~l~~h~~~V~~v~~--~~~~~---~l~sgs~---D 171 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMVSAS-EDATIKVWDYETGDF----ERTLKGHTDSVQDISF--DHSGK---LLASCSA---D 171 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEE-SSSCEEEEETTTCCC----CEEECCCSSCEEEEEE--CTTSS---EEEEEET---T
T ss_pred cccCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcE----EEEEeccCCcEEEEEE--cCCCC---EEEEEeC---C
Confidence 45667899999999888766654 478999999853221 112221 222333332 22333 4554432 2
Q ss_pred eEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCc-eEEEEEcCC-eEEEEec
Q psy3725 531 SQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFS 582 (760)
Q Consensus 531 ~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~ 582 (760)
-+|.+|.+...+ .++.+. ....+.++.|.+++ .|+.|...+ ..++|+.
T Consensus 172 ~~i~iwd~~~~~----~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~ 222 (410)
T 1vyh_C 172 MTIKLWDFQGFE----CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222 (410)
T ss_dssp SCCCEEETTSSC----EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CeEEEEeCCCCc----eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 267788864322 223332 24678899999765 465566544 6777886
No 220
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.03 E-value=11 Score=42.89 Aligned_cols=47 Identities=6% Similarity=0.090 Sum_probs=33.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 91 TQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 91 q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
+.+.++..+++......+.++++.+++.++..++.+.+++|+++++.
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 551 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH
Confidence 66777778888888888888888777777777777666666665553
No 221
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=75.81 E-value=77 Score=32.69 Aligned_cols=229 Identities=9% Similarity=0.117 Sum_probs=110.2
Q ss_pred CCeeEEEEec-CCCeEEEEEc-CC-----CCCCceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcc
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-GK-----QRYVQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVE 494 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~l-----~~~~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~ 494 (760)
...|+|.+.- |+..|+.|++ ++ ... ..........+.-+.+...-+.+++.++.++.|+++++..-. .
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~--~-- 93 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLKSFEIYNVHPV-AHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ--D-- 93 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSSEEEEEEETTE-EEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE--E--
T ss_pred CCceEEEEECCCCCEEEEEcCCEEEEEecCCc-ceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc--E--
Confidence 3457777742 3445888888 32 211 112112223477788888888887777766899999974311 0
Q ss_pred eeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEE--E
Q psy3725 495 WVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVG--Y 572 (760)
Q Consensus 495 ~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG--~ 572 (760)
...+.-...+..++. . .. .++++... +|.+|.+.........+.. |..+ +.+... .++++ .
T Consensus 94 ~~~~~~~~~v~~v~~---~-~~---~~~~~~~~----~i~i~d~~~~~~~~~~~~~---~~~~--~~~s~~-~la~~sg~ 156 (355)
T 3vu4_A 94 VSRIKVDAPVKDLFL---S-RE---FIVVSYGD----VISVFKFGNPWKRITDDIR---FGGV--CEFSNG-LLVYSNEF 156 (355)
T ss_dssp EEEEECSSCEEEEEE---C-SS---EEEEEETT----EEEEEESSTTCCBSSCCEE---EEEE--EEEETT-EEEEEESS
T ss_pred EEEEECCCceEEEEE---c-CC---EEEEEEcC----EEEEEECCCCceeeEEecc---CCce--EEEEcc-EEEEeCCC
Confidence 111111112222221 1 12 45566655 7889998654111222222 3332 333333 66663 4
Q ss_pred cCC-eEEEEecCCCCceeecCCC--CCcc---cccccCCCCceEEEEeC-CCeEEEEe--cce-EEEEcC-CCCcccccc
Q psy3725 573 QSG-FSIYKFSQDNRPIPLIHQD--NPLV---SLLTYSPVDALLAIELP-RGEFLLVF--HSL-AAYVDS-QGHKSREKE 641 (760)
Q Consensus 573 ~~g-F~ivdl~~~~~~~~Ll~~~--d~sl---~f~~~~~~~pl~i~~l~-~~EfLLcy--~~~-gvfVD~-~G~rsR~~~ 641 (760)
..| -.++|+. ++....-.... ...+ .........++..+..+ ++.+|+.- |.. -..-|. .|+... .
T Consensus 157 ~~g~v~iwd~~-~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~--~ 233 (355)
T 3vu4_A 157 NLGQIHITKLQ-SSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR--E 233 (355)
T ss_dssp CTTCEEEEECC-C------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE--E
T ss_pred cCcEEEEEECC-CCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE--E
Confidence 433 6677876 22100000000 0000 00111234556555553 45566533 321 223343 354442 2
Q ss_pred ee---cCCCCcEEEeeC--CeEEEEeC-CeeEEEECcCCc
Q psy3725 642 IM---YPALPTGASYMD--GQLLIFSE-THVDVFNAESGD 675 (760)
Q Consensus 642 I~---W~~~P~~~ay~~--PYLlvf~~-~~IEVr~i~tg~ 675 (760)
+. -.+...+++|.. .||+.-+. ..|.|+++.++.
T Consensus 234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 43 233344566654 47776665 579999998764
No 222
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=75.64 E-value=18 Score=33.16 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=35.0
Q ss_pred HHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy3725 74 MELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMD 124 (760)
Q Consensus 74 ~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e 124 (760)
.++-.||..|++|--.-.-..|-+.+..+..+.+|.+|.+++.+..+....
T Consensus 48 ~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~ 98 (129)
T 2fxo_A 48 QEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888766656666666777777777777777777666664333
No 223
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=75.43 E-value=29 Score=36.88 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=30.1
Q ss_pred cceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 357 IPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 357 ip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
.|+.|.|... +....++|.|.|..+|++|+.+|..+..
T Consensus 288 ~~~~F~i~~~-----~~~~~~~l~a~s~~ek~~W~~~i~~ai~ 325 (353)
T 1kz7_A 288 DTKKFEIWYN-----AREEVYIIQAPTPEIKAAWVNAIRKVLT 325 (353)
T ss_dssp BTTEEEEEET-----TTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEC-----CCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 4788999642 2236789999999999999999997655
No 224
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=75.38 E-value=71 Score=32.08 Aligned_cols=118 Identities=9% Similarity=0.072 Sum_probs=68.6
Q ss_pred CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcc-cceEEEEeeeeCCCccceEEEEEEecCCceE
Q psy3725 454 DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPET-KGCLSFTTGPLTHTRTQHCLALAVKRQNSSQ 532 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~et-Kgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~ 532 (760)
+...|+.|.+-++.+.|++- +.+..|+++++..-.. .....+... ..+..++......+. +|+.+-. .-+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~---~l~s~~~---dg~ 80 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATC-SSDKTIKIFEVEGETH--KLIDTLTGHEGPVWRVDWAHPKFGT---ILASCSY---DGK 80 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEE-ETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECCGGGCS---EEEEEET---TSC
T ss_pred CcccEEEEEEcCCCCEEEEE-ECCCcEEEEecCCCcc--eeeeEecCCCCcEEEEEeCCCCCCC---EEEEecc---CCE
Confidence 56789999999988876654 4468899999842111 001222222 223333332211123 4555542 126
Q ss_pred EEEEEecCCcccceeeeeEe-cCCcceEEEEecC--c-eEEEEEcCC-eEEEEec
Q psy3725 533 IILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSE--G-RLCVGYQSG-FSIYKFS 582 (760)
Q Consensus 533 Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~--~-~LcVG~~~g-F~ivdl~ 582 (760)
|.+|.+..++ ......+. ....+.++.|..+ + .|++|...| ..++|+.
T Consensus 81 v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 133 (379)
T 3jrp_A 81 VLIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133 (379)
T ss_dssp EEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred EEEEEcCCCc--eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence 8888876543 22333333 4678899999975 3 677787765 6778886
No 225
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=74.96 E-value=6.6 Score=48.60 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 101 RSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 101 ~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
..++.+++.++.+.++++++|.++++++.+|.++
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~ 1009 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444443333333
No 226
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=74.92 E-value=6.5 Score=31.38 Aligned_cols=36 Identities=8% Similarity=0.076 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 102 SELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 102 ~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
.....+|.+..+.+..|.+|..|++.|+.|+..|+.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888999999999999999999999988774
No 227
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=74.90 E-value=71 Score=31.82 Aligned_cols=209 Identities=12% Similarity=0.116 Sum_probs=114.4
Q ss_pred CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEE-EEeeeeCCCccceEEEEEEecCCceE
Q psy3725 454 DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLS-FTTGPLTHTRTQHCLALAVKRQNSSQ 532 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~-f~~g~~~~~~~~~~LcVAvKr~~~~~ 532 (760)
+...+ .+.+-++-+.+++.+..+..|+++++..-.. ....+....+... ++. ...+. +|+++-...+.-+
T Consensus 39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~--s~dg~---~l~~~~~~~~~~~ 109 (331)
T 3u4y_A 39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP---KVVAIQEGQSSMADVDI--TPDDQ---FAVTVTGLNHPFN 109 (331)
T ss_dssp CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC---EEEEEEECSSCCCCEEE--CTTSS---EEEECCCSSSSCE
T ss_pred cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce---eEEecccCCCCccceEE--CCCCC---EEEEecCCCCccc
Confidence 34556 8888888887777776567899998853221 0111111111111 222 22333 4553221111227
Q ss_pred EEEEEecCCcccceeeeeEecCCcceEEEEecCce-EEEEEc--CC-eEEEEecCCCCceeecCCCCCcccccccCCCCc
Q psy3725 533 IILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGR-LCVGYQ--SG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDA 608 (760)
Q Consensus 533 Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~-LcVG~~--~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~p 608 (760)
|.+|.+... +....+..+..+.++.|.++|+ |.++.. .. ..++++..++.....- .........|
T Consensus 110 i~v~d~~~~----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-------~~~~~~~~~~ 178 (331)
T 3u4y_A 110 MQSYSFLKN----KFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-------QEFISGGTRP 178 (331)
T ss_dssp EEEEETTTT----EEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-------EEEECSSSSE
T ss_pred EEEEECCCC----CeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-------CccccCCCCc
Confidence 888886543 3345677778889999999874 666654 34 6788886333222110 0000112334
Q ss_pred eEEEEeCCCeEEEEec---ceEEEEcC-CCCccc-ccceecCCCCcEEEeeC--CeEEEEe--CCeeEEEECcCCcE--E
Q psy3725 609 LLAIELPRGEFLLVFH---SLAAYVDS-QGHKSR-EKEIMYPALPTGASYMD--GQLLIFS--ETHVDVFNAESGDW--L 677 (760)
Q Consensus 609 l~i~~l~~~EfLLcy~---~~gvfVD~-~G~rsR-~~~I~W~~~P~~~ay~~--PYLlvf~--~~~IEVr~i~tg~l--V 677 (760)
..+.--+++.+|++-+ ..-..+|. .|+... ...+.-...|..+++.. .||++.. .+.|-|+++.+|++ +
T Consensus 179 ~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~ 258 (331)
T 3u4y_A 179 FNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFV 258 (331)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEE
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeee
Confidence 4333334555554322 22223454 344411 22466667888888874 4787775 45799999999988 7
Q ss_pred EEEec
Q psy3725 678 QTVNI 682 (760)
Q Consensus 678 QtI~~ 682 (760)
++++.
T Consensus 259 ~~~~~ 263 (331)
T 3u4y_A 259 KSFGH 263 (331)
T ss_dssp EEEEC
T ss_pred ccccc
Confidence 77653
No 228
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=74.73 E-value=67 Score=31.47 Aligned_cols=154 Identities=12% Similarity=0.108 Sum_probs=82.5
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCCC---ceEE--cCCCCCeeEEEEecC--CCeEEEEECCCCeEEEEECC
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRYV---QIAR--VGDTKKIYQMDYIPE--EQLLVVLAGKQRYVRLVPVR 486 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~~---~l~r--v~~~k~V~QI~Vi~e--~~lLlvLsgk~r~L~l~~L~ 486 (760)
...|+|.+.- ++..|+.|+. + +.... .+.. -.....|+.|...+. .++|+ .++.++.|+++++.
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~-s~~~dg~v~vwd~~ 89 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIA-SASYDKTVKLWEED 89 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEE-EEETTSCEEEEEEC
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEE-EEcCCCeEEEEecC
Confidence 4568888742 3445888876 2 22211 1222 135678999999985 45544 45557899999986
Q ss_pred CccCCC----cc-eeecCcc-cceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcc--cceeeeeE-------
Q psy3725 487 ALDGDE----VE-WVKIPET-KGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKT--RHKRLHEV------- 551 (760)
Q Consensus 487 ~L~~~~----~~-~~kl~et-Kgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~--~fkk~kE~------- 551 (760)
.-.... .. ...+... ..+..++......+. +|+++-. .-.|.+|.+...+. .+....++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL---KLACLGN---DGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS---EEEEEET---TCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred CCcccccccCcceeeeecccCCceeEEEEcCCCCCc---EEEEecC---CCcEEEecCCChHHhcccccccccccccccc
Confidence 532211 01 1222221 223333332221123 4454432 22788898754331 11111111
Q ss_pred -ecCCcceEEEEec----CceEEEEEcCCeEEEEec
Q psy3725 552 -ILPTLAQCIHIFS----EGRLCVGYQSGFSIYKFS 582 (760)
Q Consensus 552 -~lP~~~~sl~~~~----~~~LcVG~~~gF~ivdl~ 582 (760)
.....+.++.|.. ...|.+|...+..++...
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~ 199 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRG 199 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEEC
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEcc
Confidence 2234567888875 238888998888777775
No 229
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=74.07 E-value=80 Score=32.07 Aligned_cols=115 Identities=8% Similarity=0.025 Sum_probs=64.4
Q ss_pred CCCCeeEEEEec--CCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCce
Q psy3725 454 DTKKIYQMDYIP--EEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSS 531 (760)
Q Consensus 454 ~~k~V~QI~Vi~--e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~ 531 (760)
+...|..+.+-+ ..+.++.- +.+..|+++++..-.. ...........+..++ ....+. +|+++-. .-
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~--~~~~~~~~~~~i~~~~--~~pdg~---~lasg~~---dg 192 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWA-DNRGTIGFQSYEDDSQ--YIVHSAKSDVEYSSGV--LHKDSL---LLALYSP---DG 192 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEE-ETTCCEEEEESSSSCE--EEEECCCSSCCCCEEE--ECTTSC---EEEEECT---TS
T ss_pred CCCCEEEEEcCCCCCCCEEEEE-eCCCcEEEEECCCCcE--EEEEecCCCCceEEEE--ECCCCC---EEEEEcC---CC
Confidence 335688888888 66665554 4578999999853211 0001011111122222 222333 4554432 22
Q ss_pred EEEEEEecCCcccceeeeeEec--CCcceEEEEecCc-eEEEEEcCCeEEEEec
Q psy3725 532 QIILYEITRTKTRHKRLHEVIL--PTLAQCIHIFSEG-RLCVGYQSGFSIYKFS 582 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~kE~~l--P~~~~sl~~~~~~-~LcVG~~~gF~ivdl~ 582 (760)
.|.+|.+...+.. ...+.. ..++.+|.|.+++ .|+.|......++|+.
T Consensus 193 ~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~ 243 (343)
T 3lrv_A 193 ILDVYNLSSPDQA---SSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLR 243 (343)
T ss_dssp CEEEEESSCTTSC---CEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETT
T ss_pred EEEEEECCCCCCC---ccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcC
Confidence 6888987544321 123333 6789999999876 6777777778888886
No 230
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=73.90 E-value=8.1 Score=32.10 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=14.2
Q ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 111 ICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 111 l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
|+.-+.++++|..++..++.++.+|++.++
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555444333
No 231
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=73.57 E-value=11 Score=33.99 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 105 IAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 105 ~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
..++-++++...++++...|+|+|+++.+++..|+.
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 344455556666666667777778888777765544
No 232
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=73.39 E-value=78 Score=31.61 Aligned_cols=236 Identities=8% Similarity=0.035 Sum_probs=119.4
Q ss_pred CCCCCeeEEEEecC----CCeEEEEECCCCeEEEEECCCccCCC-cceeecC-cccceEEEEeeeeCC--CccceEEEEE
Q psy3725 453 GDTKKIYQMDYIPE----EQLLVVLAGKQRYVRLVPVRALDGDE-VEWVKIP-ETKGCLSFTTGPLTH--TRTQHCLALA 524 (760)
Q Consensus 453 ~~~k~V~QI~Vi~e----~~lLlvLsgk~r~L~l~~L~~L~~~~-~~~~kl~-etKgc~~f~~g~~~~--~~~~~~LcVA 524 (760)
++..+|+.|.+-|. ...+++-++ +..|+++++..-.... .....-+ ....+...+...... +. +|+++
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~-~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~l~~~ 91 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVG-SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP---LLAVA 91 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEE-TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE---EEEEE
T ss_pred CCCCceEEEEEecccCCCCceEEEECC-CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC---EEEEe
Confidence 45678999999984 444444444 4589999985322100 0111111 112233333222211 22 55555
Q ss_pred EecCCceEEEEEEecCCcccceeeeeEe-cCCcceEEEEec-Cc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccc
Q psy3725 525 VKRQNSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFS-EG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSL 600 (760)
Q Consensus 525 vKr~~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~-~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f 600 (760)
-. .-.|.+|.+...+ ....+. ...++.+|.|.+ ++ .|+.|...| ..++|+. ++.....+..
T Consensus 92 ~~---dg~i~v~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~------- 156 (366)
T 3k26_A 92 GS---RGIIRIINPITMQ----CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ-TDTLVAIFGG------- 156 (366)
T ss_dssp ET---TCEEEEECTTTCC----EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT-TTEEEEEECS-------
T ss_pred cC---CCEEEEEEchhce----EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee-cCeEEEEecc-------
Confidence 43 2378889875433 334454 577899999987 44 567777554 7788886 3333322210
Q ss_pred cccCCCCceEEEEe-CCCeEEEEe--cceEEEEcCC-CCcccccc--ee-------------------------cCCCCc
Q psy3725 601 LTYSPVDALLAIEL-PRGEFLLVF--HSLAAYVDSQ-GHKSREKE--IM-------------------------YPALPT 649 (760)
Q Consensus 601 ~~~~~~~pl~i~~l-~~~EfLLcy--~~~gvfVD~~-G~rsR~~~--I~-------------------------W~~~P~ 649 (760)
......++..+.. +++.+|++- |..-...|.. |+...... +. -...-.
T Consensus 157 -~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 157 -VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp -TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred -cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 0112234433333 345555433 2222333432 22111000 00 234445
Q ss_pred EEEeeCCeEEEEe-CCeeEEEECcCCc--------------EEEEEecCC--ceec--CCC--CCEEEEecCCccEEEEe
Q psy3725 650 GASYMDGQLLIFS-ETHVDVFNAESGD--------------WLQTVNIRR--ALPL--DTR--GSLCFSLANDIPYVVYL 708 (760)
Q Consensus 650 ~~ay~~PYLlvf~-~~~IEVr~i~tg~--------------lVQtI~~~~--ir~L--~s~--G~l~l~s~~~~~~~~~~ 708 (760)
+++|...+|++-. ++.|-|+++.++. .++.+.... +..+ ..+ |.+++.+..+-.+.+|.
T Consensus 236 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd 315 (366)
T 3k26_A 236 CVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWD 315 (366)
T ss_dssp EEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEE
T ss_pred EEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEE
Confidence 6778766766665 5679999998874 366665433 2211 123 66666555544454444
No 233
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.23 E-value=35 Score=31.45 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=64.6
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcccccCCCcccee
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCI 360 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdvi~a~~~dip~i 360 (760)
...|||+-=. +...+-|+|.|-+|+...|-+|-.+.+. .....|.| .|.+.|+.....++++ ...-|..
T Consensus 8 vlkeGWmVH~--t~~d~~rKRHYWrLD~K~Itlf~~e~~~------k~ykeIpL-seIL~v~~~~~~~~~~--~~~~phc 76 (129)
T 2d9z_A 8 MVKEGWMVHY--TSRDNLRKRHYWRLDSKCLTLFQNESGS------KYYKEIPL-SEILRISSPRDFTNIS--QGSNPHC 76 (129)
T ss_dssp SEEEEEEEEE--ESSCCCCEEEEEEEESSCEEEESCSSCC------SCCCEECT-TTCCEECCTTCCCCSS--SCSCCCS
T ss_pred eeecceEEEE--ccCCccccceeeEecCCeEEEEecCCCC------ceeceeeH-HHhcccccccCccccC--CCCCCce
Confidence 3458997211 1223569999999999999999764322 23556777 7788887766655543 3345678
Q ss_pred eeeecccCCCCCCcceEEEeeC-------------C---HHHHHHHHHHHHHHH
Q psy3725 361 FRITTSLMDPPGTKNHTLMLAD-------------S---DTEKTKWVVALSELH 398 (760)
Q Consensus 361 f~it~s~l~~~~~~~~l~LlA~-------------S---~~ek~kWv~~L~~~~ 398 (760)
|.|.+..+ .|+..+ | ...-+-|-.+|..+.
T Consensus 77 FEi~T~~~--------~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqAL 122 (129)
T 2d9z_A 77 FEIITDTM--------VYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQAL 122 (129)
T ss_dssp EEEECSSC--------EEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHH
T ss_pred EEEEECCE--------EEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhc
Confidence 88865543 122222 2 578888999987664
No 234
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=73.18 E-value=84 Score=31.92 Aligned_cols=225 Identities=14% Similarity=0.202 Sum_probs=112.3
Q ss_pred CCCCeeEEEEecCC---CeEEEEECCCCeEEEEECCCccCCCcce-eecC-cccceEEEEeeeeCCCccceEEEEEEecC
Q psy3725 454 DTKKIYQMDYIPEE---QLLVVLAGKQRYVRLVPVRALDGDEVEW-VKIP-ETKGCLSFTTGPLTHTRTQHCLALAVKRQ 528 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~---~lLlvLsgk~r~L~l~~L~~L~~~~~~~-~kl~-etKgc~~f~~g~~~~~~~~~~LcVAvKr~ 528 (760)
....|..+...++. +-+|+-++.++.|+++++..- .... ..+. ...++..++. ...+. +++.+-.
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~---~~~~~~~l~gh~~~v~~~~~--~~~~~---~l~s~s~-- 100 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE---RLDLQWSLEGHQLGVVSVDI--SHTLP---IAASSSL-- 100 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETT---EEEEEEEECCCSSCEEEEEE--CSSSS---EEEEEET--
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCC---CeeeeeeeccCCCCEEEEEE--CCCCC---EEEEEeC--
Confidence 44678888887642 334555666889999987321 1111 1122 1223333322 22223 3333321
Q ss_pred CceEEEEEEecCCcccceeeeeEec-CCcceEEEEecCc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCC
Q psy3725 529 NSSQIILYEITRTKTRHKRLHEVIL-PTLAQCIHIFSEG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSP 605 (760)
Q Consensus 529 ~~~~Vl~ye~~~~k~~fkk~kE~~l-P~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~ 605 (760)
.-+|.+|.+..++ .++.+.. +..+.++.|.+++ .|+.|...| ..++++. ++.....+. ..
T Consensus 101 -D~~i~lWd~~~~~----~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~-~~~~~~~~~-----------~~ 163 (321)
T 3ow8_A 101 -DAHIRLWDLENGK----QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE-SGKKEYSLD-----------TR 163 (321)
T ss_dssp -TSEEEEEETTTTE----EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT-TCSEEEEEE-----------CS
T ss_pred -CCcEEEEECCCCC----EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC-CCceeEEec-----------CC
Confidence 2378899875543 2334433 5567789999876 566666554 5677775 222221111 11
Q ss_pred CCceEEEEe-CCCeEEEEe--cceEEEEcC-CCCcccccceecCCC-CcEEEeeC--CeEEEEeC-CeeEEEECcCCcEE
Q psy3725 606 VDALLAIEL-PRGEFLLVF--HSLAAYVDS-QGHKSREKEIMYPAL-PTGASYMD--GQLLIFSE-THVDVFNAESGDWL 677 (760)
Q Consensus 606 ~~pl~i~~l-~~~EfLLcy--~~~gvfVD~-~G~rsR~~~I~W~~~-P~~~ay~~--PYLlvf~~-~~IEVr~i~tg~lV 677 (760)
..++..+.. +++.+|++- |..-...|. .|+..+ .+.-... ..+++|.. .||+.-+. ..|-|+++.++.++
T Consensus 164 ~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~ 241 (321)
T 3ow8_A 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH--TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA 241 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--EECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE
T ss_pred CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE--EEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee
Confidence 122222222 344555432 222222343 232221 2322222 34566643 46666654 46999999999999
Q ss_pred EEEecCC--cee--cCCCCCEEEEecCCccEEEE
Q psy3725 678 QTVNIRR--ALP--LDTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 678 QtI~~~~--ir~--L~s~G~l~l~s~~~~~~~~~ 707 (760)
+++.+.. +.- .+.+|..++.+..+-.+.++
T Consensus 242 ~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iw 275 (321)
T 3ow8_A 242 GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW 275 (321)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence 9986544 322 23466665555444445444
No 235
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=72.49 E-value=13 Score=29.46 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+|.-.+|.++.+.|.|+|..=+=|..|.+|+..+.+++..++
T Consensus 13 qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 13 QEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 456677888888889999988888888998888888888776
No 236
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=72.34 E-value=2.8 Score=44.54 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=31.9
Q ss_pred ccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 356 DIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 356 dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
+.+..|.|.+... +...+++|.|+|..+|++|+.+|.++.
T Consensus 306 ~~~~~F~i~~~~~---~~~~~~~l~a~s~~ek~~W~~~i~~ai 345 (346)
T 2z0q_A 306 RVKNFFRVSFKNG---SQSQTHSLQANDTFNKQQWLNCIRQAK 345 (346)
T ss_dssp HTSSEEEEEECCG---GGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEecC---CCCceEEEEECCHHHHHHHHHHHHHhh
Confidence 4578999975532 224688999999999999999998874
No 237
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=71.06 E-value=9 Score=33.04 Aligned_cols=36 Identities=11% Similarity=0.245 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 102 SELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 102 ~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
.....++.+..+.++.|..|..+|+.|++|+..|+.
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556788999999999999999999999988774
No 238
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=70.52 E-value=15 Score=27.27 Aligned_cols=39 Identities=3% Similarity=0.260 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
....+.+.+|+.+|..-|..|+-...|..||.+|+.|+.
T Consensus 10 kkiarlkkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 10 KKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 345678889999999999999999999999999988763
No 239
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=70.37 E-value=1.3e+02 Score=34.73 Aligned_cols=152 Identities=15% Similarity=0.144 Sum_probs=84.1
Q ss_pred CCeeEEEEec-C--CCeEEEEEc-C------CCCCC--ceEE-cCCCCCeeEEEEecC--CCeEEEEECCCCeEEEEECC
Q psy3725 422 TKKIYQMDYI-P--KEQLLVVLA-G------KQRYV--QIAR-VGDTKKIYQMDYIPE--EQLLVVLAGKQRYVRLVPVR 486 (760)
Q Consensus 422 ~~~i~Caa~~-~--~~rllvGTe-~------l~~~~--~l~r-v~~~k~V~QI~Vi~e--~~lLlvLsgk~r~L~l~~L~ 486 (760)
...|.|.+.. + ++.|+.|+. | +.... .+.. ......|+.+.+.++ .+++++ ++.+..|+++++.
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~s-gs~dg~I~vwdl~ 131 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV-ASSDGKVSVVEFK 131 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEECC
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEE-EeCCCcEEEEEee
Confidence 4557777642 2 456888876 3 22220 1222 235678999999998 566555 4557899999986
Q ss_pred CccCCCcceeecC-cccceEEEEeeeeC-----------CCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEec-
Q psy3725 487 ALDGDEVEWVKIP-ETKGCLSFTTGPLT-----------HTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVIL- 553 (760)
Q Consensus 487 ~L~~~~~~~~kl~-etKgc~~f~~g~~~-----------~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~l- 553 (760)
.-.... ...+. ....+..++..... ++. +|+++-. .-+|.+|.+......+.....+..
T Consensus 132 ~~~~~~--~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~---~l~sgs~---dg~I~iwd~~~~~~~~~~~~~~~~h 203 (753)
T 3jro_A 132 ENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR---KFVTGGA---DNLVKIWKYNSDAQTYVLESTLEGH 203 (753)
T ss_dssp SSSCCC--CEEEECCSSCEEEEEECCCC---------CGGGC---CEEEEET---TSCEEEEEEETTTTEEEEEEEECCC
T ss_pred cCCCcc--eeEeecCCCceEEEEecCcccccccccccCCCCC---EEEEEEC---CCeEEEEeccCCcccceeeeeecCC
Confidence 542211 11111 12233333332210 122 4454442 125888887554333333344433
Q ss_pred CCcceEEEEecC---c-eEEEEEcCC-eEEEEec
Q psy3725 554 PTLAQCIHIFSE---G-RLCVGYQSG-FSIYKFS 582 (760)
Q Consensus 554 P~~~~sl~~~~~---~-~LcVG~~~g-F~ivdl~ 582 (760)
..++.+|.|.++ + .|+.|...| ..++|+.
T Consensus 204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 677899999976 4 455566554 7788886
No 240
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=69.35 E-value=88 Score=30.58 Aligned_cols=251 Identities=13% Similarity=0.087 Sum_probs=118.6
Q ss_pred EEEEecCC-CeEEEEEc------CCCCCCceEEcC----CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcc
Q psy3725 426 YQMDYIPK-EQLLVVLA------GKQRYVQIARVG----DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVE 494 (760)
Q Consensus 426 ~Caa~~~~-~rllvGTe------~l~~~~~l~rv~----~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~ 494 (760)
||.+ +.. +.|++|.| ++... ...++. +...|+.+...++.+.++.= +.++.|+++++..-..
T Consensus 29 ~~l~-WS~~~~lAvg~D~tV~iWd~~tg-~~~~~~~~~~~~~~V~~v~~~~~~~~l~sg-s~Dg~v~iw~~~~~~~---- 101 (318)
T 4ggc_A 29 NLVD-WSSGNVLAVALDNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVG-TSSAEVQLWDVQQQKR---- 101 (318)
T ss_dssp BCEE-ECTTSEEEEEETTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTEE----
T ss_pred eEEE-ECCCCEEEEEeCCEEEEEECCCC-CEEEEEEecCCCCeEEEEEECCCCCEEEEE-ECCCcEEEeecCCcee----
Confidence 5555 443 45889998 23333 444432 34569999999998877664 4578999999843211
Q ss_pred eeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeE-ecCCcceEEEEecCc-eEEEE
Q psy3725 495 WVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEV-ILPTLAQCIHIFSEG-RLCVG 571 (760)
Q Consensus 495 ~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~-~lP~~~~sl~~~~~~-~LcVG 571 (760)
...+.. +..+..+.. . +. .|+.+-. .-.+..|...... .....+ .....+..+.+..++ .|..|
T Consensus 102 ~~~~~~h~~~~~~~~~---~-~~---~l~s~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 168 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSW---N-SY---ILSSGSR---SGHIHHHDVRVAE---HHVATLSGHSQEVCGLRWAPDGRHLASG 168 (318)
T ss_dssp EEEEECCSSCEEEEEE---E-TT---EEEEEET---TSEEEEEETTSSS---CEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEEecCccceEEEeec---C-CC---EEEEEec---CCceEeeecCCCc---eeEEEEcCccCceEEEEEcCCCCEEEEE
Confidence 111111 111222211 1 12 3443332 2245555543222 122222 235566677777665 55556
Q ss_pred EcCC-eEEEEecCCCCce-eecCCCCCcccccccCCCCceEEEE-eCCC-eEEEEe---cceEEEE-cC-CCCcccccce
Q psy3725 572 YQSG-FSIYKFSQDNRPI-PLIHQDNPLVSLLTYSPVDALLAIE-LPRG-EFLLVF---HSLAAYV-DS-QGHKSREKEI 642 (760)
Q Consensus 572 ~~~g-F~ivdl~~~~~~~-~Ll~~~d~sl~f~~~~~~~pl~i~~-l~~~-EfLLcy---~~~gvfV-D~-~G~rsR~~~I 642 (760)
...| -.++|+. ++... .... .......++..+. ...+ .++.+. ....|.+ |. .+... ...
T Consensus 169 ~~d~~i~iwd~~-~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~--~~~ 237 (318)
T 4ggc_A 169 GNDNLVNVWPSA-PGEGGWVPLQ--------TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL--SAV 237 (318)
T ss_dssp ETTSCEEEEESS-CBTTBSCCSE--------EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE--EEE
T ss_pred ecCcceeEEECC-CCccccccee--------eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc--ccc
Confidence 6544 5677775 22111 0000 0001122222222 2222 222211 1111211 22 22111 122
Q ss_pred ecCCCCcEEEee--CCeEEEEe---CCeeEEEECcCCcEEEEEecCC--ceec--CCCCCEEEEecCCccEEEE
Q psy3725 643 MYPALPTGASYM--DGQLLIFS---ETHVDVFNAESGDWLQTVNIRR--ALPL--DTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 643 ~W~~~P~~~ay~--~PYLlvf~---~~~IEVr~i~tg~lVQtI~~~~--ir~L--~s~G~l~l~s~~~~~~~~~ 707 (760)
.-......+++. ..++++.. ++.|-|+++.+++.++++.+.. |.-+ +.+|..++.+..|-.+.++
T Consensus 238 ~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 238 DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 223333344444 34676654 5789999999999999997533 3322 3466655544443444333
No 241
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=69.23 E-value=7.3 Score=32.41 Aligned_cols=30 Identities=10% Similarity=0.272 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 107 AQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 107 ~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+..|||++|.+|.+|...+..++..+++.+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 456667777777777777766666666544
No 242
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=68.83 E-value=98 Score=30.89 Aligned_cols=233 Identities=10% Similarity=0.122 Sum_probs=119.2
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCCCceEEc-CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRYVQIARV-GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE 492 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~~~l~rv-~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~ 492 (760)
...|.|.+.- ++..|+.|.. + +.....+..+ .....|..+...++.+.|+.-+ .+..|+++++..-..
T Consensus 13 ~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s-~d~~i~vwd~~~~~~-- 89 (304)
T 2ynn_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-DDFRIRVFNYNTGEK-- 89 (304)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE-TTSEEEEEETTTCCE--
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEEC-CCCEEEEEECCCCcE--
Confidence 4568888742 3445888876 2 3333122222 2456799999999988877654 478999999843211
Q ss_pred cceeecCcc-cceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe-cCCcceEEEEec-Cc-eE
Q psy3725 493 VEWVKIPET-KGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFS-EG-RL 568 (760)
Q Consensus 493 ~~~~kl~et-Kgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~-~~-~L 568 (760)
...+... ..+..++. ...+. +|+.+-. .-+|.+|.+..+.. ....+. -...+.++.|.+ ++ .|
T Consensus 90 --~~~~~~h~~~v~~~~~--~~~~~---~l~sgs~---D~~v~lWd~~~~~~---~~~~~~~h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 90 --VVDFEAHPDYIRSIAV--HPTKP---YVLSGSD---DLTVKLWNWENNWA---LEQTFEGHEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp --EEEEECCSSCEEEEEE--CSSSS---EEEEEET---TSCEEEEEGGGTTE---EEEEECCCCSCEEEEEECTTCTTEE
T ss_pred --EEEEeCCCCcEEEEEE--cCCCC---EEEEECC---CCeEEEEECCCCcc---hhhhhcccCCcEEEEEECCCCCCEE
Confidence 1122211 12222222 22233 4444432 22688898754321 112222 346688999986 33 57
Q ss_pred EEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEe---CCCeEEEEe--cceEEEEcCC-CCcccccc
Q psy3725 569 CVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIEL---PRGEFLLVF--HSLAAYVDSQ-GHKSREKE 641 (760)
Q Consensus 569 cVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l---~~~EfLLcy--~~~gvfVD~~-G~rsR~~~ 641 (760)
+.|...| -.++|+........+... ...++..+.. +++.+|+.- |..-.+-|.. |+.. ..
T Consensus 157 ~sgs~D~~v~iwd~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~--~~ 223 (304)
T 2ynn_A 157 ASGCLDRTVKVWSLGQSTPNFTLTTG-----------QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV--AT 223 (304)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEECC-----------CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE--EE
T ss_pred EEEeCCCeEEEEECCCCCccceeccC-----------CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc--ee
Confidence 7777655 667787521111222111 1122222222 233444432 2222222332 2211 12
Q ss_pred eecCCCCc-EEEee--CCeEEEEe-CCeeEEEECcCCcEEEEEecC
Q psy3725 642 IMYPALPT-GASYM--DGQLLIFS-ETHVDVFNAESGDWLQTVNIR 683 (760)
Q Consensus 642 I~W~~~P~-~~ay~--~PYLlvf~-~~~IEVr~i~tg~lVQtI~~~ 683 (760)
+.-...+. .++|. .++|+.-+ +..|-|+++.+++++++++..
T Consensus 224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~ 269 (304)
T 2ynn_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (304)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence 33233333 34443 34666665 457999999999999999654
No 243
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=68.80 E-value=1.1e+02 Score=31.49 Aligned_cols=170 Identities=10% Similarity=0.067 Sum_probs=85.1
Q ss_pred EEEEEEecCCceEEEEEEecCCcccceeeeeEecC--CcceEEEEecCce-EEEEEcCCeEEEEecCCCCceeecCCCCC
Q psy3725 520 CLALAVKRQNSSQIILYEITRTKTRHKRLHEVILP--TLAQCIHIFSEGR-LCVGYQSGFSIYKFSQDNRPIPLIHQDNP 596 (760)
Q Consensus 520 ~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP--~~~~sl~~~~~~~-LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~ 596 (760)
.|.|+.... .-.|+.|.++.....+..+..+.++ ..+.+++|.++|+ |.++......++++..++....+....
T Consensus 4 ~~~vg~~~~-~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~-- 80 (365)
T 1jof_A 4 HLMIGTWTP-PGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHP-- 80 (365)
T ss_dssp EEEEEESSS-SCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEE--
T ss_pred EEEEEEccC-CCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEee--
Confidence 455555321 1156777664332234444444444 3678899998875 666666567777874123322221100
Q ss_pred cccccccCCCCceEEEEeCCCeEEE--E--------ec--------ceEEE-EcCCCCcccccc-eec--CCCCcEEEee
Q psy3725 597 LVSLLTYSPVDALLAIELPRGEFLL--V--------FH--------SLAAY-VDSQGHKSREKE-IMY--PALPTGASYM 654 (760)
Q Consensus 597 sl~f~~~~~~~pl~i~~l~~~EfLL--c--------y~--------~~gvf-VD~~G~rsR~~~-I~W--~~~P~~~ay~ 654 (760)
..+ .|.++.--+++.+|+ . |. ...+| ++..|+..+... +.+ ...|..+++.
T Consensus 81 -----~~g--~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s 153 (365)
T 1jof_A 81 -----IGG--HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD 153 (365)
T ss_dssp -----CCS--SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC
T ss_pred -----cCC--CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC
Confidence 000 111100012344322 1 21 12344 455676543221 222 2457778776
Q ss_pred CC--eEEEEe--CCeeEEEECc-CCcEE--EEEe----cCCcee--cCCCCC-EEEEec
Q psy3725 655 DG--QLLIFS--ETHVDVFNAE-SGDWL--QTVN----IRRALP--LDTRGS-LCFSLA 699 (760)
Q Consensus 655 ~P--YLlvf~--~~~IEVr~i~-tg~lV--QtI~----~~~ir~--L~s~G~-l~l~s~ 699 (760)
.- ||++.. .+.|-++++. +|++. +.+. +...+- ++.+|. +|++..
T Consensus 154 pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~ 212 (365)
T 1jof_A 154 PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME 212 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC
Confidence 43 777664 4689999998 88764 4454 333443 345774 555543
No 244
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=68.54 E-value=6.8 Score=39.69 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=47.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 87 IQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 87 i~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
-.-|+-|+..++++|+.+..++++|++...++..+...++.-+.++.+++..-+
T Consensus 163 e~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 163 SVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344899999999999999999999999999999999999999999988874333
No 245
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=68.45 E-value=1.1e+02 Score=36.68 Aligned_cols=147 Identities=16% Similarity=0.227 Sum_probs=83.3
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCCCceEEcCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCc
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRYVQIARVGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEV 493 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~~~l~rv~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~ 493 (760)
...|.|.+.- ++..|+.|+. + ...........+...|..|...+ .+.|+.. +.++.|+++++..- ..
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~-s~D~~v~lWd~~~~---~~ 91 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVI-NAKDTVYVLSLYSQ---KV 91 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEE-ETTCEEEEEETTTC---SE
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEE-ECcCeEEEEECCCC---cE
Confidence 5678888842 3456999987 2 22221223334556899999999 5545554 45789999998531 10
Q ss_pred ceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCccc-cee--e----ee-EecCCcceEEEEecC
Q psy3725 494 EWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTR-HKR--L----HE-VILPTLAQCIHIFSE 565 (760)
Q Consensus 494 ~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~-fkk--~----kE-~~lP~~~~sl~~~~~ 565 (760)
...+.....+..++ ....+. +|+++.. .-+|.+|.+...+.. |+. . .. -....++.+|+|.++
T Consensus 92 -~~~~~~~~~V~~v~--~sp~g~---~l~sgs~---dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 92 -LTTVFVPGKITSID--TDASLD---WMLIGLQ---NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp -EEEEECSSCEEEEE--CCTTCS---EEEEEET---TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred -EEEEcCCCCEEEEE--ECCCCC---EEEEEcC---CCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 11121111222222 222333 5666653 226788887543311 000 0 00 012467899999974
Q ss_pred --ceEEEEEcCCeEEEEec
Q psy3725 566 --GRLCVGYQSGFSIYKFS 582 (760)
Q Consensus 566 --~~LcVG~~~gF~ivdl~ 582 (760)
+.|.+|+..|-.++|+.
T Consensus 163 ~~~~l~~g~~dg~vlWd~~ 181 (902)
T 2oaj_A 163 DIGTVLISYEYVTLTYSLV 181 (902)
T ss_dssp EEEEEEEECSSCEEEEETT
T ss_pred CCCEEEEEeCCCcEEEECC
Confidence 48899999887788886
No 246
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=68.39 E-value=5.7 Score=42.84 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=35.7
Q ss_pred ccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHhhcC
Q psy3725 356 DIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILKRNN 405 (760)
Q Consensus 356 dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~~~~ 405 (760)
|-+.+|.|+.... ....+.|.|.|..+|++|+.+|.++...++.++
T Consensus 330 d~~~~f~i~~~~~----~~~~~~l~a~s~~ek~~W~~~i~~~i~~~~~~~ 375 (385)
T 1txd_A 330 DNKALFVISMSDN----GAQIYELVAQTVSEKTVWQDLICRMAASVKEQS 375 (385)
T ss_dssp -CCEEEEEEECSS----CEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCceEEEEEEcCC----CceEEEEEcCCHHHHHHHHHHHHHHHHhccCCC
Confidence 4557787765432 146789999999999999999999999877664
No 247
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=67.60 E-value=11 Score=31.71 Aligned_cols=34 Identities=12% Similarity=0.264 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 103 ELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 103 ~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
....++.+..+.++.|..|..+++.|++|+..|+
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999999999998877
No 248
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=67.57 E-value=16 Score=30.78 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 77 LNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 77 l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
++...|.+.--+|.+. |.........+|.++....++++.|..|+++....+.+.+
T Consensus 13 ~e~d~a~~~~~~~e~~----l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 13 LDKENALDRAEQAEAD----KKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333332 3333344455566666666666666666666666665544
No 249
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=67.18 E-value=28 Score=35.47 Aligned_cols=50 Identities=8% Similarity=0.271 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhcc
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLES 141 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~~ 141 (760)
.+.+++...+.+...++.++.+.+.+...+..+++..+..++..+.++..
T Consensus 36 ~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 36 KALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445555555555555555555555555555555555555544444443
No 250
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=67.15 E-value=18 Score=31.98 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q psy3725 94 SEELSKTRSELIAAQKEICDFRLKM 118 (760)
Q Consensus 94 ~eeL~k~~~~~~~~e~~l~e~e~~~ 118 (760)
++|++..-.++..+.+||++++++.
T Consensus 41 Q~Ei~~~E~QL~iArQKLkdAe~~~ 65 (107)
T 2k48_A 41 QENITAHEQQLVTARQKLKDAEKAV 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555566666666665543
No 251
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=67.12 E-value=87 Score=33.88 Aligned_cols=151 Identities=7% Similarity=0.081 Sum_probs=87.8
Q ss_pred ceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCc-------ccceeeeeEecCCcceEEEEecCceEEEEEcCC
Q psy3725 503 GCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTK-------TRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSG 575 (760)
Q Consensus 503 gc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k-------~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~g 575 (760)
.|+.++++...+ ++++|-.. .+.+|....-. ..|.....+.+|. +..|+| .+..|+||...+
T Consensus 39 ~~nlLais~~~g-----ll~a~~~~----~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-d~~~L~v~~~~~ 107 (388)
T 1xip_A 39 SLQNLDISNSKS-----LFVAASGS----KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-HGDQVLVSTRNA 107 (388)
T ss_dssp CCBCEEEETTTT-----EEEEEETT----EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-ETTEEEEEESSE
T ss_pred cccEEEEcCCCC-----EEEEeCCC----EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE-CCCEEEEEcCCc
Confidence 567777765553 56666533 56667742111 1144445678999 999999 656999997777
Q ss_pred eEEEEecCCCCce-eecCCCCCcccccccCCCCceEEEEeCCCeEEEEecceEEEE-cCCCCcccccceecCCCCcEEEe
Q psy3725 576 FSIYKFSQDNRPI-PLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVFHSLAAYV-DSQGHKSREKEIMYPALPTGASY 653 (760)
Q Consensus 576 F~ivdl~~~~~~~-~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~~~gvfV-D~~G~rsR~~~I~W~~~P~~~ay 653 (760)
-.+||+. +.... .+.. . ..++.-++.....+++|-++-.+++ |....... .+.. ...+++|
T Consensus 108 l~v~dv~-sl~~~~~~~~---------~---~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~--~~~~--~Vs~v~W 170 (388)
T 1xip_A 108 LYSLDLE-ELSEFRTVTS---------F---EKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTK--QLAQ--NVTSFDV 170 (388)
T ss_dssp EEEEESS-STTCEEEEEE---------C---SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE--EEEE--SEEEEEE
T ss_pred EEEEEch-hhhccCccce---------e---ecceeeEEecCCCEEEEECCCCEEEEEccCCccc--cccC--CceEEEE
Confidence 8888886 22211 1110 0 0112222222334777777777776 33322211 1321 2334444
Q ss_pred eCC-eEEEEeCCeeEEEECcCCcE--EEEEe
Q psy3725 654 MDG-QLLIFSETHVDVFNAESGDW--LQTVN 681 (760)
Q Consensus 654 ~~P-YLlvf~~~~IEVr~i~tg~l--VQtI~ 681 (760)
+.- +++++.++.|.++...+++. ..+|+
T Consensus 171 SpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~ 201 (388)
T 1xip_A 171 TNSQLAVLLKDRSFQSFAWRNGEMEKQFEFS 201 (388)
T ss_dssp CSSEEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred cCCceEEEEcCCcEEEEcCCCccccccceec
Confidence 332 77888899999999998887 77883
No 252
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=66.34 E-value=12 Score=30.01 Aligned_cols=35 Identities=9% Similarity=-0.002 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 103 ELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 103 ~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
....+|.+....+..|.+|..|++.|..|+..|+.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788889999999999999999999888764
No 253
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=65.85 E-value=26 Score=38.10 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=29.6
Q ss_pred ccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 356 DIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 356 dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
+.|+.|.|.. + ..+++|.|.|..+|++|+.+|+++..
T Consensus 301 ~~~~~f~i~~-----~--~~~~~l~a~s~~ek~~W~~~i~~ai~ 337 (434)
T 3mpx_A 301 KVPYALKIET-----S--ESCLMLSASSCAERDEWYGCLSRALP 337 (434)
T ss_dssp TSCSEEEEEC-----S--SCEEEEECSSHHHHHHHHHHHHHC--
T ss_pred CCCeeEEEec-----C--CeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 5789999942 2 24799999999999999999998865
No 254
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=65.84 E-value=18 Score=31.57 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=37.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 91 TQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 91 q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
..+++||.+++.+-..+..+|.+.++....+..||+.++.+.+.+.
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~ 52 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 4456777888888888888899999999999999988888877653
No 255
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=65.79 E-value=1.8e+02 Score=32.86 Aligned_cols=193 Identities=11% Similarity=0.084 Sum_probs=98.9
Q ss_pred CeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCccccee
Q psy3725 468 QLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKR 547 (760)
Q Consensus 468 ~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk 547 (760)
+++++....+..|.+++.....- ...++--...|.+++ ...++ +|.|+- +. -.|.+|.+... ..+.
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v----~~~i~~g~~p~~v~~--SpDGr---~lyv~~-~d--g~V~viD~~~~--t~~~ 232 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEI----KTVLDTGYAVHISRL--SASGR---YLFVIG-RD--GKVNMIDLWMK--EPTT 232 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCE----EEEEECSSCEEEEEE--CTTSC---EEEEEE-TT--SEEEEEETTSS--SCCE
T ss_pred ceEEEEeCCCCeEEEEECCCCeE----EEEEeCCCCccceEE--CCCCC---EEEEEc-CC--CeEEEEECCCC--CCcE
Confidence 34444444456788877643211 112222223443332 22344 666664 22 26777776311 1356
Q ss_pred eeeEecCCcceEEEEe----cCc-eEEEEEc--CCeEEEEecCCCCceeecCCC-----------CCcccccccCCCCce
Q psy3725 548 LHEVILPTLAQCIHIF----SEG-RLCVGYQ--SGFSIYKFSQDNRPIPLIHQD-----------NPLVSLLTYSPVDAL 609 (760)
Q Consensus 548 ~kE~~lP~~~~sl~~~----~~~-~LcVG~~--~gF~ivdl~~~~~~~~Ll~~~-----------d~sl~f~~~~~~~pl 609 (760)
..++.+...+..|.|. .+| .+.|+.. ..+.++|.. +.++...+... .+..+.+..+..+|.
T Consensus 233 v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~-t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~ 311 (567)
T 1qks_A 233 VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE 311 (567)
T ss_dssp EEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred eEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC-CCcEEEEEeccccccccccccCCCceEEEEEcCCCCE
Confidence 6788888888999999 366 5666553 457888865 45443322211 111111111122333
Q ss_pred EEEEeCCCeEEEEecceEEEEcCCCC-cccccceecCCCCcEEEeeC--CeEEEEe--CCeeEEEECcCCcEEEEEec
Q psy3725 610 LAIELPRGEFLLVFHSLAAYVDSQGH-KSREKEIMYPALPTGASYMD--GQLLIFS--ETHVDVFNAESGDWLQTVNI 682 (760)
Q Consensus 610 ~i~~l~~~EfLLcy~~~gvfVD~~G~-rsR~~~I~W~~~P~~~ay~~--PYLlvf~--~~~IEVr~i~tg~lVQtI~~ 682 (760)
.++-+.+..- -.+||.... ...-..|.-...|..++|.. -|+++.. .+.|-|++..+++++.+|+.
T Consensus 312 ~vv~~~~~g~-------v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v 382 (567)
T 1qks_A 312 FIVNVKETGK-------ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT 382 (567)
T ss_dssp EEEEETTTTE-------EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred EEEEecCCCe-------EEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence 3333322111 123443221 11111233334455666654 3887765 58999999999999999876
No 256
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=65.64 E-value=6.9 Score=31.35 Aligned_cols=34 Identities=6% Similarity=0.161 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 103 ELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 103 ~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
....+|.++.+.+.+|.+|..+++.|+.|+..|+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999987655
No 257
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=65.57 E-value=14 Score=28.75 Aligned_cols=36 Identities=6% Similarity=0.119 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 93 ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
++.++...-+.|..+..-|++++.++..|.+|+++|
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355556666777777777888888888888877766
No 258
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=64.61 E-value=22 Score=43.81 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=31.5
Q ss_pred ccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHH
Q psy3725 356 DIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399 (760)
Q Consensus 356 dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~ 399 (760)
..++.|.|.... +..++|.|.|..+|++|+++|..++.
T Consensus 509 ~~~~~F~I~~~~------~~~~~L~A~S~eeK~~Wi~~I~~~q~ 546 (1049)
T 3ksy_A 509 EYKHAFEIILKD------ENSVIFSAKSAEEKNNWMAALISLQY 546 (1049)
T ss_dssp SCCSEEEECCTT------SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEcCC------CCEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 578899995321 25789999999999999999998876
No 259
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=64.48 E-value=11 Score=29.47 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=14.9
Q ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 111 ICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 111 l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
....+..+.+|+.+++.|.++.+|+++++.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555555554443
No 260
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=64.13 E-value=1.2e+02 Score=30.12 Aligned_cols=103 Identities=10% Similarity=0.123 Sum_probs=54.7
Q ss_pred CCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccce
Q psy3725 467 EQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHK 546 (760)
Q Consensus 467 ~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fk 546 (760)
.+.+++.++.+..|+++++..-.. .....++...+.+.++.. ..+. .+.++.. ..-+|.+|..... +
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~s--~dg~---~~~v~~~--~~~~i~~~d~~t~----~ 76 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTV--YKSCVMPDKFGPGTAMMA--PDNR---TAYVLNN--HYGDIYGIDLDTC----K 76 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEE--EEEEECSSCCSSCEEEEC--TTSS---EEEEEET--TTTEEEEEETTTT----E
T ss_pred CCEEEEEeCCCCeEEEEECCCCcE--EEEEecCCCCCCceeEEC--CCCC---EEEEEeC--CCCcEEEEeCCCC----c
Confidence 344455555578899998743211 111223321123333332 2233 4555543 2336888886433 2
Q ss_pred eeeeEecCCc-------ceEEEEecCc-eEEEEEc-------------CCeEEEEec
Q psy3725 547 RLHEVILPTL-------AQCIHIFSEG-RLCVGYQ-------------SGFSIYKFS 582 (760)
Q Consensus 547 k~kE~~lP~~-------~~sl~~~~~~-~LcVG~~-------------~gF~ivdl~ 582 (760)
....+.++.. +..+.|.++| .|.++.. ....++|+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~ 133 (349)
T 1jmx_B 77 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 133 (349)
T ss_dssp EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECC
Confidence 3345555442 6779999877 5677662 456777876
No 261
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=64.01 E-value=1.4e+02 Score=30.92 Aligned_cols=164 Identities=10% Similarity=0.077 Sum_probs=85.6
Q ss_pred EEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCc-eEEEEEcCCeEEEEecCCCCcee-ecCCCCCc
Q psy3725 520 CLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG-RLCVGYQSGFSIYKFSQDNRPIP-LIHQDNPL 597 (760)
Q Consensus 520 ~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~-~LcVG~~~gF~ivdl~~~~~~~~-Ll~~~d~s 597 (760)
+|++|--. .--+|.+|..... +...++....++.+|+|.++| .|+.|...+-.+++.. ++.... ...
T Consensus 147 ~la~as~~-~d~~i~iwd~~~~----~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~-~~~~~~~~~~----- 215 (365)
T 4h5i_A 147 VAAIASSK-VPAIMRIIDPSDL----TEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTV-TGSCIARKTD----- 215 (365)
T ss_dssp CEEEEESC-SSCEEEEEETTTT----EEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETT-TCCEEEEECC-----
T ss_pred EEEEEECC-CCCEEEEeECCCC----cEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEec-cCcceeeeec-----
Confidence 56777521 1237889997543 344567788899999999887 4555666677777765 332221 111
Q ss_pred ccccccCCCCceEEEEe-CCCeEEEEecc---eEEE---EcC-CCCc--ccccceecCCCC-cEEEeeC--CeEEEEe-C
Q psy3725 598 VSLLTYSPVDALLAIEL-PRGEFLLVFHS---LAAY---VDS-QGHK--SREKEIMYPALP-TGASYMD--GQLLIFS-E 663 (760)
Q Consensus 598 l~f~~~~~~~pl~i~~l-~~~EfLLcy~~---~gvf---VD~-~G~r--sR~~~I~W~~~P-~~~ay~~--PYLlvf~-~ 663 (760)
.....++..+.. +++.+|+.... .+++ .|. .+.. .+...+.-...| .+++|.. .||..-+ +
T Consensus 216 -----~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D 290 (365)
T 4h5i_A 216 -----FDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND 290 (365)
T ss_dssp -----CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred -----CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence 011223322222 35555554321 1111 121 1111 111122222223 3566653 2665544 5
Q ss_pred CeeEEEECcCCcEEEEE-ecCC--ceec--CCCCCEEEEec
Q psy3725 664 THVDVFNAESGDWLQTV-NIRR--ALPL--DTRGSLCFSLA 699 (760)
Q Consensus 664 ~~IEVr~i~tg~lVQtI-~~~~--ir~L--~s~G~l~l~s~ 699 (760)
+.|-|+++.+++.++++ .+.. |.-+ .++|...+...
T Consensus 291 ~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S 331 (365)
T 4h5i_A 291 NSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS 331 (365)
T ss_dssp SCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred CEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence 57999999999999987 3322 3322 35676555433
No 262
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=63.48 E-value=1.3e+02 Score=30.54 Aligned_cols=161 Identities=9% Similarity=0.078 Sum_probs=84.9
Q ss_pred EEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEcCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEE
Q psy3725 532 QIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLA 611 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i 611 (760)
+|+.|....++ .+.+..|..+.+|.|..+|++.|++..|..++|+. ++....+....+. . ....+-.+
T Consensus 72 ~i~~~d~~~~~-----~~~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~-~g~~~~~~~~~~~-~-----~~~~~~~i 139 (326)
T 2ghs_A 72 ELHELHLASGR-----KTVHALPFMGSALAKISDSKQLIASDDGLFLRDTA-TGVLTLHAELESD-L-----PGNRSNDG 139 (326)
T ss_dssp EEEEEETTTTE-----EEEEECSSCEEEEEEEETTEEEEEETTEEEEEETT-TCCEEEEECSSTT-C-----TTEEEEEE
T ss_pred EEEEEECCCCc-----EEEEECCCcceEEEEeCCCeEEEEECCCEEEEECC-CCcEEEEeeCCCC-C-----CCCCCCCE
Confidence 67777754322 23456688899999998899999998888888885 3444444332110 0 00112222
Q ss_pred EEeCCCeEEEEec-------ceEEE-EcCCCCcccccceecCCCCcEEEeeCC--eEEEEe--CCeeEEEECc--CC-cE
Q psy3725 612 IELPRGEFLLVFH-------SLAAY-VDSQGHKSREKEIMYPALPTGASYMDG--QLLIFS--ETHVDVFNAE--SG-DW 676 (760)
Q Consensus 612 ~~l~~~EfLLcy~-------~~gvf-VD~~G~rsR~~~I~W~~~P~~~ay~~P--YLlvf~--~~~IEVr~i~--tg-~l 676 (760)
..-.++.+++.-. .-++| +| .|+..+-. .=...|..+++..- +|++.. .+.|-++++. +| .+
T Consensus 140 ~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~--~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~ 216 (326)
T 2ghs_A 140 RMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLF--ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT 216 (326)
T ss_dssp EECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEE--EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS
T ss_pred EECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEee--CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcc
Confidence 2223445444321 13455 45 45432211 00124566666532 666665 4578888876 67 43
Q ss_pred E--EEE-ecC--C--c--eecCCCCCEEEEecCCccEEEE
Q psy3725 677 L--QTV-NIR--R--A--LPLDTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 677 V--QtI-~~~--~--i--r~L~s~G~l~l~s~~~~~~~~~ 707 (760)
. +.+ ... . . -.+..+|.|+++..+.-.+.+|
T Consensus 217 ~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~ 256 (326)
T 2ghs_A 217 GKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRY 256 (326)
T ss_dssp SCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred cCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence 1 222 111 1 1 1245689999887543344444
No 263
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=63.14 E-value=2.6 Score=43.06 Aligned_cols=32 Identities=44% Similarity=1.004 Sum_probs=27.5
Q ss_pred CCcccCCCcccccccccCeeeecCCCcccccccccc
Q psy3725 220 SPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDK 255 (760)
Q Consensus 220 ~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~ 255 (760)
....|..|.+++. +|.+|..|+...|..|..+
T Consensus 179 ~i~~C~iC~~iv~----~g~~C~~C~~~~H~~C~~~ 210 (238)
T 3nw0_A 179 AVKICNICHSLLI----QGQSCETCGIRMHLPCVAK 210 (238)
T ss_dssp TCCBCTTTCSBCS----SCEECSSSCCEECHHHHHH
T ss_pred CCCcCcchhhHHh----CCcccCccChHHHHHHHHH
Confidence 3678999999754 7999999999999999855
No 264
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=63.03 E-value=37 Score=41.97 Aligned_cols=12 Identities=8% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q psy3725 28 TTKTTQELEYLK 39 (760)
Q Consensus 28 a~k~~~ele~lr 39 (760)
..+|..+|+.|.
T Consensus 923 ~~~LE~kl~eLq 934 (1080)
T 2dfs_A 923 HIGLENKIMQLQ 934 (1080)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 265
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=62.52 E-value=14 Score=26.35 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 106 AAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 106 ~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
++|-|+.+...++.+|..|+++|++.+.+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 46788999999999999999999988765
No 266
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=62.49 E-value=1.3e+02 Score=30.17 Aligned_cols=211 Identities=13% Similarity=0.129 Sum_probs=105.1
Q ss_pred CCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcce-eecC----------cccceEEEEeeeeCCCccceEEEEE
Q psy3725 456 KKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEW-VKIP----------ETKGCLSFTTGPLTHTRTQHCLALA 524 (760)
Q Consensus 456 k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~-~kl~----------etKgc~~f~~g~~~~~~~~~~LcVA 524 (760)
..+..|.+-++-+.|++.+..+..+.+++++. .+ .... ..+. ....++.++. ...+. ++++
T Consensus 86 ~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~-~g-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--spdg~----l~v~ 157 (347)
T 3hfq_A 86 TPPAYVAVDEARQLVYSANYHKGTAEVMKIAA-DG-ALTLTDTVQHSGHGPRPEQDGSHIHYTDL--TPDNR----LAVI 157 (347)
T ss_dssp CCCSEEEEETTTTEEEEEETTTTEEEEEEECT-TS-CEEEEEEEECCCCCSSTTCSSCCEEEEEE--CTTSC----EEEE
T ss_pred CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC-CC-CeeecceeecCCCCCCccccCCCceEEEE--CCCCc----EEEE
Confidence 45677888888887777764567888888752 11 1001 1110 0112333333 22233 3344
Q ss_pred EecCCceEEEEEEecCCcccceeeeeEecC--CcceEEEEecCce-EEEEEcC--CeEEEEecC-CCCceeecCCCCCcc
Q psy3725 525 VKRQNSSQIILYEITRTKTRHKRLHEVILP--TLAQCIHIFSEGR-LCVGYQS--GFSIYKFSQ-DNRPIPLIHQDNPLV 598 (760)
Q Consensus 525 vKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP--~~~~sl~~~~~~~-LcVG~~~--gF~ivdl~~-~~~~~~Ll~~~d~sl 598 (760)
-.. .-+|.+|.+..+. .+.....+..+ ..+..+.|..+|+ |.|.... ...+++++. ++....+.......-
T Consensus 158 ~~~--~~~v~~~~~~~~g-~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~ 234 (347)
T 3hfq_A 158 DLG--SDKVYVYNVSDAG-QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPA 234 (347)
T ss_dssp ETT--TTEEEEEEECTTS-CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCT
T ss_pred eCC--CCEEEEEEECCCC-cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCC
Confidence 322 2267888876222 23444444443 3577899999886 6665433 356777762 122111100000000
Q ss_pred cccccCCCCceEEEEeCCCeEEEEe----cceEEE-EcCCCCcccccceec-CCCCcEEEeeCC--eEEEEeC--CeeEE
Q psy3725 599 SLLTYSPVDALLAIELPRGEFLLVF----HSLAAY-VDSQGHKSREKEIMY-PALPTGASYMDG--QLLIFSE--THVDV 668 (760)
Q Consensus 599 ~f~~~~~~~pl~i~~l~~~EfLLcy----~~~gvf-VD~~G~rsR~~~I~W-~~~P~~~ay~~P--YLlvf~~--~~IEV 668 (760)
.+ .....|..+.--+++.+|.+- +...+| ++..|.......+.- ...|..++|..- ||++... +.|.|
T Consensus 235 ~~--~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v 312 (347)
T 3hfq_A 235 DY--TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATL 312 (347)
T ss_dssp TC--CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEE
T ss_pred CC--CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEE
Confidence 00 001123222222456666432 223444 334454333333433 346889998643 8888763 68999
Q ss_pred E--ECcCCcEEEE
Q psy3725 669 F--NAESGDWLQT 679 (760)
Q Consensus 669 r--~i~tg~lVQt 679 (760)
+ +..+|++.++
T Consensus 313 ~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 313 YARDLTSGKLSLL 325 (347)
T ss_dssp EEECTTTCCEEEE
T ss_pred EEEeCCCCeEEec
Confidence 9 5568887754
No 267
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=62.32 E-value=1.2e+02 Score=29.72 Aligned_cols=36 Identities=8% Similarity=0.068 Sum_probs=26.1
Q ss_pred CCcEEEeeCC--eEEEEeCCeeEEEECcCCcEEEEEecC
Q psy3725 647 LPTGASYMDG--QLLIFSETHVDVFNAESGDWLQTVNIR 683 (760)
Q Consensus 647 ~P~~~ay~~P--YLlvf~~~~IEVr~i~tg~lVQtI~~~ 683 (760)
.|..+++..- ||++. .+.|-++++.+++.++.++..
T Consensus 242 ~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~ 279 (337)
T 1pby_B 242 FYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP 279 (337)
T ss_dssp CEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS
T ss_pred ceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC
Confidence 3445666532 66665 688999999999999998643
No 268
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=62.25 E-value=2.1e+02 Score=32.36 Aligned_cols=226 Identities=5% Similarity=0.007 Sum_probs=110.8
Q ss_pred CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCc-ceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCc
Q psy3725 453 GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEV-EWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNS 530 (760)
Q Consensus 453 ~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~-~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~ 530 (760)
++...|+.|..-++..-+|+-++.++.|+++++..-..... ....+.. +..+..++. ...+. +|+.+-. .
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~--s~~g~---~l~sgs~---D 451 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVL--SSDGQ---FALSGSW---D 451 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEE--CTTSS---EEEEEET---T
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEE--CCCCC---EEEEEeC---C
Confidence 46678999998877654555566689999999854321110 0112221 122222222 22333 4554432 2
Q ss_pred eEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCC
Q psy3725 531 SQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVD 607 (760)
Q Consensus 531 ~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~ 607 (760)
-+|.+|.+...+ ..+.+. ....+.++.|..++ .|+.|...+ -.++|+.+. ....+... ..+..+
T Consensus 452 g~v~vwd~~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~--------~~~h~~ 518 (694)
T 3dm0_A 452 GELRLWDLAAGV----STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTISEG--------GEGHRD 518 (694)
T ss_dssp SEEEEEETTTTE----EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEEECSS--------TTSCSS
T ss_pred CcEEEEECCCCc----ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-cceeeccC--------CCCCCC
Confidence 278899975443 223333 45678899999775 455566543 556666421 11111110 011223
Q ss_pred ceEEEEeCCC---eEEEE-e-cceEEEEcCCCCcccccceecC-CCCcEEEeeC--CeEEEEe-CCeeEEEECcCCcEEE
Q psy3725 608 ALLAIELPRG---EFLLV-F-HSLAAYVDSQGHKSREKEIMYP-ALPTGASYMD--GQLLIFS-ETHVDVFNAESGDWLQ 678 (760)
Q Consensus 608 pl~i~~l~~~---EfLLc-y-~~~gvfVD~~G~rsR~~~I~W~-~~P~~~ay~~--PYLlvf~-~~~IEVr~i~tg~lVQ 678 (760)
++..+..+.+ .+|++ - |..-..-|........ .+.-. +...+++|+. .||+.-+ +..|-|+++.++..+.
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~-~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~ 597 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS-TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY 597 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE-EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 3433333221 23332 1 2222223332221111 12212 2233455543 3666555 5579999999999888
Q ss_pred EEecCC-cee--cCCCCCEEEEecC
Q psy3725 679 TVNIRR-ALP--LDTRGSLCFSLAN 700 (760)
Q Consensus 679 tI~~~~-ir~--L~s~G~l~l~s~~ 700 (760)
++.... +.- .+++|.+..++.+
T Consensus 598 ~~~~~~~v~~~~~sp~~~~l~~~~~ 622 (694)
T 3dm0_A 598 SLEANSVIHALCFSPNRYWLCAATE 622 (694)
T ss_dssp CCBCSSCEEEEEECSSSSEEEEEET
T ss_pred EecCCCcEEEEEEcCCCcEEEEEcC
Confidence 775433 222 2345555544443
No 269
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.31 E-value=44 Score=30.42 Aligned_cols=45 Identities=9% Similarity=0.125 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 93 ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
-+....+.+.....+|.+|.+.+...+....|.+.|+.++++++.
T Consensus 38 ~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 38 SQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777788888888887777777778888888777653
No 270
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=60.48 E-value=1.6e+02 Score=30.39 Aligned_cols=141 Identities=11% Similarity=0.221 Sum_probs=73.4
Q ss_pred EEEEEEecCCcccce-eeeeEecCCcceEEEEecCc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCc
Q psy3725 532 QIILYEITRTKTRHK-RLHEVILPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDA 608 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fk-k~kE~~lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~p 608 (760)
+|.+|.+..++.... ++....-.+.+.+|+|..+| .|+.|...| ..++|+. ++.....+. +..++
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~-~~~~~~~~~-----------~h~~~ 171 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA-QQVVLSSYR-----------AHAAQ 171 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEEC-----------CCSSC
T ss_pred EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEEEc-----------CcCCc
Confidence 688899865543211 11122346789999999876 566676655 6778886 333322111 22344
Q ss_pred eEEEEeC-CC-eEEE-Ee-cceEEEEcC-CCCcccccceecC-CCCcEEEeeC--CeEEEE--eCCeeEEEECcCCcEEE
Q psy3725 609 LLAIELP-RG-EFLL-VF-HSLAAYVDS-QGHKSREKEIMYP-ALPTGASYMD--GQLLIF--SETHVDVFNAESGDWLQ 678 (760)
Q Consensus 609 l~i~~l~-~~-EfLL-cy-~~~gvfVD~-~G~rsR~~~I~W~-~~P~~~ay~~--PYLlvf--~~~~IEVr~i~tg~lVQ 678 (760)
+..+... ++ .+|+ |- |..-..-|. .|+..+.....-. ..+.+++|.. .++++. .+..|.|+++.+++.++
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~ 251 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL 251 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE
Confidence 4434432 22 2443 22 332223343 4444433222222 2345677753 344443 45679999999999999
Q ss_pred EEecCC
Q psy3725 679 TVNIRR 684 (760)
Q Consensus 679 tI~~~~ 684 (760)
++.+..
T Consensus 252 ~~~~h~ 257 (344)
T 4gqb_B 252 SSAVHS 257 (344)
T ss_dssp EEECCS
T ss_pred EEcCCC
Confidence 986543
No 271
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=60.23 E-value=19 Score=25.70 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 106 AAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 106 ~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
++|-|+.+.-.++.+|..|+++|++.+.+
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 46778888888999999999999888765
No 272
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=60.22 E-value=1.9e+02 Score=31.25 Aligned_cols=251 Identities=10% Similarity=0.192 Sum_probs=130.2
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C-C---CCCCceEE-c-CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCc
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G-K---QRYVQIAR-V-GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEV 493 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~-l---~~~~~l~r-v-~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~ 493 (760)
...|+|.+.. ++..|+.|+. + + +.+....+ + +....|..+.+.++.+.++.-++ +..|+++++.. ..
T Consensus 262 ~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~-d~~i~~w~~~~---~~- 336 (577)
T 2ymu_A 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLWNRNG---QH- 336 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTS---CE-
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCC---Ce-
Confidence 4457777643 3445888887 2 1 12212222 2 34578999999998888776554 68899998632 11
Q ss_pred ceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCc-eEEE
Q psy3725 494 EWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEG-RLCV 570 (760)
Q Consensus 494 ~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~-~LcV 570 (760)
...+.. ...+..++ ....+. +|+++-. .-.|.+|..+. +.+..+. ...++.+|.|.+++ .|+.
T Consensus 337 -~~~~~~~~~~v~~~~--~s~~g~---~l~~~~~---dg~v~~~~~~~-----~~~~~~~~~~~~v~~~~~s~dg~~l~~ 402 (577)
T 2ymu_A 337 -LQTLTGHSSSVWGVA--FSPDGQ---TIASASD---DKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIAS 402 (577)
T ss_dssp -EEEECCCSSCEEEEE--ECTTSS---EEEEEET---TSEEEEEETTC-----CEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred -eEEEeCCCCCEEEEE--ECCCCC---EEEEEeC---CCEEEEEcCCC-----CEEEEecCCCCCeEEEEECCCCCEEEE
Confidence 112211 12222222 223334 4555543 12577787432 1223333 35678899999876 5677
Q ss_pred EEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEe-CCCeEEE-EecceE-EEEcCCCCcccccceecC-
Q psy3725 571 GYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIEL-PRGEFLL-VFHSLA-AYVDSQGHKSREKEIMYP- 645 (760)
Q Consensus 571 G~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l-~~~EfLL-cy~~~g-vfVD~~G~rsR~~~I~W~- 645 (760)
|...+ ..++|..+ .....+. ....++..+.. +++.+|+ +..+-. .+-|..|+..+. +.-.
T Consensus 403 ~~~d~~v~~~~~~~--~~~~~~~-----------~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~--~~~~~ 467 (577)
T 2ymu_A 403 ASDDKTVKLWNRNG--QLLQTLT-----------GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQT--LTGHS 467 (577)
T ss_dssp EETTSEEEEECTTC--CEEEEEE-----------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEE--EECCS
T ss_pred EeCCCEEEEEeCCC--CEEEEec-----------CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEE--EcCCC
Confidence 77655 45666532 2211111 12233333333 2444544 233222 333666654432 2222
Q ss_pred CCCcEEEeeC--CeEEEEeC-CeeEEEECcCCcEEEEEecCC--ceec--CCCCCEEEEecCCccEEEE
Q psy3725 646 ALPTGASYMD--GQLLIFSE-THVDVFNAESGDWLQTVNIRR--ALPL--DTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 646 ~~P~~~ay~~--PYLlvf~~-~~IEVr~i~tg~lVQtI~~~~--ir~L--~s~G~l~l~s~~~~~~~~~ 707 (760)
....+++|.. .||..... ..|.|++. +|+.++++.+.. +.-+ .++|...+....+-.+-+|
T Consensus 468 ~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw 535 (577)
T 2ymu_A 468 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535 (577)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEE
Confidence 2334566653 36666554 56999995 789999987544 3322 3566655444443333333
No 273
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=60.06 E-value=1.7e+02 Score=30.60 Aligned_cols=253 Identities=13% Similarity=0.099 Sum_probs=125.6
Q ss_pred eEEEEecC-CCeEEEEEc------CCCCCCceEEcC----CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCc
Q psy3725 425 IYQMDYIP-KEQLLVVLA------GKQRYVQIARVG----DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEV 493 (760)
Q Consensus 425 i~Caa~~~-~~rllvGTe------~l~~~~~l~rv~----~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~ 493 (760)
.||.+ |. ++.|++|.+ +.... .+.++. +...|+.|...++.+.|++ ++.+..|+++++..-..
T Consensus 108 ~~~l~-wS~~n~lAvgld~tV~lWd~~tg-~~~~~~~~~~~~~~V~sv~fspdg~~las-gs~Dg~v~iWd~~~~~~--- 181 (420)
T 4gga_A 108 LNLVD-WSSGNVLAVALDNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAV-GTSSAEVQLWDVQQQKR--- 181 (420)
T ss_dssp CBCEE-ECTTSEEEEEETTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEE-EETTSCEEEEETTTTEE---
T ss_pred ceeEE-ECCCCEEEEEeCCEEEEEECCCC-CEEEEEEecCCCCcEEEEEECCCCCEEEE-EECCCeEEEEEcCCCcE---
Confidence 35555 33 445899998 23333 444432 3456999999998887665 44578999999853211
Q ss_pred ceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCc-eEEE
Q psy3725 494 EWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEG-RLCV 570 (760)
Q Consensus 494 ~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~-~LcV 570 (760)
...+.. ...+..++. . +. +|+.+-. .-.+..|...... .....+. ....+..+.|..++ .|..
T Consensus 182 -~~~~~~h~~~v~~~s~---~-~~---~l~sgs~---d~~i~~~d~~~~~---~~~~~~~~h~~~~~~~~~~~~g~~l~s 247 (420)
T 4gga_A 182 -LRNMTSHSARVGSLSW---N-SY---ILSSGSR---SGHIHHHDVRVAE---HHVATLSGHSQEVCGLRWAPDGRHLAS 247 (420)
T ss_dssp -EEEECCCSSCEEEEEE---E-TT---EEEEEET---TSEEEEEETTSSS---CEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred -EEEEeCCCCceEEEee---C-CC---EEEEEeC---CCceeEeeecccc---eeeEEecccccceeeeeecCCCCeeee
Confidence 111111 112222221 1 22 3444432 3367777754322 1122222 24556667777665 5555
Q ss_pred EEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEe-C-CCeEEEEe----cceEEEEcC-CCCcccccce
Q psy3725 571 GYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIEL-P-RGEFLLVF----HSLAAYVDS-QGHKSREKEI 642 (760)
Q Consensus 571 G~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l-~-~~EfLLcy----~~~gvfVD~-~G~rsR~~~I 642 (760)
|...| ..++++. ++..... .+.. ......++..+.. + ...+|.+. |..-.+-|. .|... ..+
T Consensus 248 ~~~D~~v~i~~~~-~~~~~~~------~~~~-~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~--~~~ 317 (420)
T 4gga_A 248 GGNDNLVNVWPSA-PGEGGWV------PLQT-FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL--SAV 317 (420)
T ss_dssp EETTSCEEEEESS-CCSSCSC------CSEE-ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE--EEE
T ss_pred eeccccceEEeec-cccccce------eeee-ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc--eee
Confidence 66544 5566664 2211100 0000 0012223322222 1 22333221 233333343 33322 234
Q ss_pred ecCCCCcEEEeeC--CeEEEEe---CCeeEEEECcCCcEEEEEecCC--ceec--CCCCCEEEEecCCccEEEE
Q psy3725 643 MYPALPTGASYMD--GQLLIFS---ETHVDVFNAESGDWLQTVNIRR--ALPL--DTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 643 ~W~~~P~~~ay~~--PYLlvf~---~~~IEVr~i~tg~lVQtI~~~~--ir~L--~s~G~l~l~s~~~~~~~~~ 707 (760)
.-.....++++.. .+|++.+ ++.|-|+++.+++.++++.+.. |.-+ ..+|..++....|-.+-++
T Consensus 318 ~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 318 DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 4455556666654 3666654 5789999999999999997644 3322 3466655544444444444
No 274
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=59.92 E-value=1.6e+02 Score=30.25 Aligned_cols=212 Identities=11% Similarity=0.133 Sum_probs=107.2
Q ss_pred CCCeEEEEEc-C------CCCCCceEEc--CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCc-c
Q psy3725 432 PKEQLLVVLA-G------KQRYVQIARV--GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPE-T 501 (760)
Q Consensus 432 ~~~rllvGTe-~------l~~~~~l~rv--~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~e-t 501 (760)
++..|+.|+. + +... ...+. .....|+.+...++.++|+.- +.+..|+++++..-.. ...+.. .
T Consensus 108 ~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~----~~~~~~h~ 181 (420)
T 3vl1_A 108 QMRRFILGTTEGDIKVLDSNFN-LQREIDQAHVSEITKLKFFPSGEALISS-SQDMQLKIWSVKDGSN----PRTLIGHR 181 (420)
T ss_dssp SSCEEEEEETTSCEEEECTTSC-EEEEETTSSSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCC----CEEEECCS
T ss_pred CCCEEEEEECCCCEEEEeCCCc-ceeeecccccCccEEEEECCCCCEEEEE-eCCCeEEEEeCCCCcC----ceEEcCCC
Confidence 4556888877 2 3333 44444 456789999999988866654 4578999999854321 122221 1
Q ss_pred cceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe----cCCcceEEEE---------------
Q psy3725 502 KGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI----LPTLAQCIHI--------------- 562 (760)
Q Consensus 502 Kgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~----lP~~~~sl~~--------------- 562 (760)
..+..++. ...+. +|+.+-. .-+|.+|.+...+ ....+. ....+.++.|
T Consensus 182 ~~v~~~~~--~~~~~---~l~s~~~---d~~v~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 182 ATVTDIAI--IDRGR---NVLSASL---DGTIRLWECGTGT----TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp SCEEEEEE--ETTTT---EEEEEET---TSCEEEEETTTTE----EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred CcEEEEEE--cCCCC---EEEEEcC---CCcEEEeECCCCc----eeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 22222222 22333 4554432 1268888875433 222232 2233444444
Q ss_pred ------ecCc-eEEEEEcCC-eEEEEecCCCCc-eeecCCCCCcccccccCCCCceEEEEeC-CCe-EEEE-ecceEE-E
Q psy3725 563 ------FSEG-RLCVGYQSG-FSIYKFSQDNRP-IPLIHQDNPLVSLLTYSPVDALLAIELP-RGE-FLLV-FHSLAA-Y 629 (760)
Q Consensus 563 ------~~~~-~LcVG~~~g-F~ivdl~~~~~~-~~Ll~~~d~sl~f~~~~~~~pl~i~~l~-~~E-fLLc-y~~~gv-f 629 (760)
..++ .|++|...| ..++|+. +... ..+.. ....++..+..+ ++. +|++ ..+-.| .
T Consensus 250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~l~~g~~dg~i~v 317 (420)
T 3vl1_A 250 KNNLEFGTYGKYVIAGHVSGVITVHNVF-SKEQTIQLPS-----------KFTCSCNSLTVDGNNANYIYAGYENGMLAQ 317 (420)
T ss_dssp CCTTCSSCTTEEEEEEETTSCEEEEETT-TCCEEEEECC-----------TTSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred ccceEEcCCCCEEEEEcCCCeEEEEECC-CCceeEEccc-----------ccCCCceeEEEeCCCCCEEEEEeCCCeEEE
Confidence 4444 677777665 7788886 3322 22211 122344333332 333 4443 332222 3
Q ss_pred EcC-CCCcccccceec-CCCCcEEEeeCC--eEEEEe-CCeeEEEECcCC
Q psy3725 630 VDS-QGHKSREKEIMY-PALPTGASYMDG--QLLIFS-ETHVDVFNAESG 674 (760)
Q Consensus 630 VD~-~G~rsR~~~I~W-~~~P~~~ay~~P--YLlvf~-~~~IEVr~i~tg 674 (760)
.|. .|+.. ...+.- ...|....+..+ +|+... +..|-|+++.++
T Consensus 318 wd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 318 WDLRSPECP-VGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EETTCTTSC-SEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred EEcCCCcCc-hhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence 344 33221 122333 445554444333 555554 456999998874
No 275
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=59.71 E-value=1.8e+02 Score=30.75 Aligned_cols=276 Identities=7% Similarity=0.016 Sum_probs=135.8
Q ss_pred CCeeEEEEec-CCCeE-EEEEc-C------CC--CCCceEEc---CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCC
Q psy3725 422 TKKIYQMDYI-PKEQL-LVVLA-G------KQ--RYVQIARV---GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRA 487 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rl-lvGTe-~------l~--~~~~l~rv---~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~ 487 (760)
...|.|.+.- ++..| +.|++ + +. ....+..+ .....|..|.+-++.+.|++- +++..++++++..
T Consensus 102 ~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~~g~v~~~~~~~ 180 (450)
T 2vdu_B 102 YSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIA-DKFGDVYSIDINS 180 (450)
T ss_dssp CCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTS
T ss_pred CCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEE-eCCCcEEEEecCC
Confidence 3457887743 34454 66755 2 33 33122222 345779999999987776664 4578899999865
Q ss_pred ccCCCcceeecC-cccceEEEEeeee-CCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeE--ecCCcceEEEEe
Q psy3725 488 LDGDEVEWVKIP-ETKGCLSFTTGPL-THTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEV--ILPTLAQCIHIF 563 (760)
Q Consensus 488 L~~~~~~~~kl~-etKgc~~f~~g~~-~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~--~lP~~~~sl~~~ 563 (760)
..........+. ....+..++.... .++. +|+.+-. .-+|.+|.+...+. ...+ .....+.++.|.
T Consensus 181 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~---~l~s~~~---d~~i~vwd~~~~~~----~~~~~~~h~~~v~~~~~s 250 (450)
T 2vdu_B 181 IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ---FIITSDR---DEHIKISHYPQCFI----VDKWLFGHKHFVSSICCG 250 (450)
T ss_dssp CCCSSCCCCCSEECSSCEEEEEEEECTTSCE---EEEEEET---TSCEEEEEESCTTC----EEEECCCCSSCEEEEEEC
T ss_pred cccccccceeeecccCceEEEEEcCCCCCCc---EEEEEcC---CCcEEEEECCCCce----eeeeecCCCCceEEEEEC
Confidence 432110000111 1223333333332 1133 4554432 23688888754431 2222 245778899998
Q ss_pred cCc-eEEEEEcCC-eEEEEecCCCCceeecCCCC-----------CcccccccC---CCCce-EEEEeCCCeEEEEec--
Q psy3725 564 SEG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDN-----------PLVSLLTYS---PVDAL-LAIELPRGEFLLVFH-- 624 (760)
Q Consensus 564 ~~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d-----------~sl~f~~~~---~~~pl-~i~~l~~~EfLLcy~-- 624 (760)
++ .|+.|...+ ..++|+. ++.....+...+ +...|.... ...++ .+.-.+++.+|++-.
T Consensus 251 -d~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~ 328 (450)
T 2vdu_B 251 -KDYLLLSAGGDDKIFAWDWK-TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA 328 (450)
T ss_dssp -STTEEEEEESSSEEEEEETT-TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred -CCCEEEEEeCCCeEEEEECC-CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence 55 566666554 6677886 444332221110 000011100 01122 222234566776542
Q ss_pred ceEE--E-E-cCCCCccc-ccceecCCCCcEEEeeCCeEEEEe---------CCeeEEEECc--CCcEEEEEe-c-----
Q psy3725 625 SLAA--Y-V-DSQGHKSR-EKEIMYPALPTGASYMDGQLLIFS---------ETHVDVFNAE--SGDWLQTVN-I----- 682 (760)
Q Consensus 625 ~~gv--f-V-D~~G~rsR-~~~I~W~~~P~~~ay~~PYLlvf~---------~~~IEVr~i~--tg~lVQtI~-~----- 682 (760)
+-.| | + |..|.... ...+.-.+.+.++++...-+++.. .+.|+|+.+. +|.|.-++. .
T Consensus 329 d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 408 (450)
T 2vdu_B 329 TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVNNEKSNEFDS 408 (450)
T ss_dssp CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEEECHHHHHHHHH
T ss_pred CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEEEccccCcchhH
Confidence 2223 2 2 23332222 234665677888999877555543 3458888765 456631110 1
Q ss_pred CCceecCCCCCEEEEecCCccEEEEeecc
Q psy3725 683 RRALPLDTRGSLCFSLANDIPYVVYLANI 711 (760)
Q Consensus 683 ~~ir~L~s~G~l~l~s~~~~~~~~~~~~~ 711 (760)
.-+.-+.++|.+-+...+ ..-+|..+++
T Consensus 409 ~~~~~~~~~~~~~~~~~~-~~~ly~~~~l 436 (450)
T 2vdu_B 409 AIIQSVQGDSNLVTKKEE-IYPLYNVSSL 436 (450)
T ss_dssp HHHHHHTTCTTTEECGGG-SCCCCCSSCC
T ss_pred HHHHhhhcCCccccchhh-ccccccchhh
Confidence 123345567777665443 2225555554
No 276
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=59.46 E-value=7 Score=33.10 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 107 AQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 107 ~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+..|||++|.+|.+|...+..++..+++.+
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666665543
No 277
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=59.32 E-value=13 Score=26.11 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 106 AAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 106 ~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
++|.|+.+.-.++.+|..|+++|+.-+
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 367788888888888888888887654
No 278
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=59.13 E-value=51 Score=28.14 Aligned_cols=54 Identities=17% Similarity=0.360 Sum_probs=38.2
Q ss_pred hHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 79 LQSSLNSE-IQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 79 lqsal~~E-i~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
.+.|.+.+ ++.++ .|.|.+.|... +.+|..-+++++.|..+|++.++.+++|+.
T Consensus 25 rEaA~Ee~Yfrqke--kEqL~~LKkkl---~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 25 REQAEEERYFRARA--KEQLAALKKHK---ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHH--HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35566666 33332 46677777655 567777788889999999999998888763
No 279
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=59.06 E-value=74 Score=27.19 Aligned_cols=61 Identities=10% Similarity=0.095 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhh
Q psy3725 79 LQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRL 139 (760)
Q Consensus 79 lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~ 139 (760)
|+.+|+.+-..+..+.+...++-.....+...+.+++.+...|...-..|..++.++..|+
T Consensus 26 lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 26 MKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444333333333333345555555544444444444454444443
No 280
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=58.98 E-value=31 Score=30.92 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHH------------HHHHHHhhhHHHHHHHH
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKME------------SVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~~------------~l~~e~~~l~~e~~~l~ 136 (760)
.|++|++..-..+..+.+||+++++..+ .=..++..++.++.|++
T Consensus 26 eLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLK 82 (113)
T 4fi5_A 26 ELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELK 82 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777765532 22334555555555555
No 281
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=58.56 E-value=61 Score=35.58 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 106 AAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 106 ~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
++|+|....+++.+||..||..|+.++++++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 433 SLDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444544455556666666655555555543
No 282
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=58.14 E-value=55 Score=27.83 Aligned_cols=35 Identities=6% Similarity=0.197 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKMESVSMDLR 126 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~ 126 (760)
.++.|+.+.|-.+...+-+|...+++.+++..+++
T Consensus 31 ~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 31 DNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555554
No 283
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=56.76 E-value=60 Score=29.82 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhccCC
Q psy3725 79 LQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLESGD 143 (760)
Q Consensus 79 lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~~g~ 143 (760)
|+..+++=-+--..++|||.-|=-.+-.-+-|+....+|+..-+.|+.+|+.|+.-+|+++++-.
T Consensus 16 L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~ 80 (167)
T 4gkw_A 16 LKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKAD 80 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333333333355677777776666666677788888888888888888888877776666443
No 284
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=56.27 E-value=1.9e+02 Score=29.85 Aligned_cols=170 Identities=11% Similarity=0.076 Sum_probs=90.8
Q ss_pred CCCCeeE-EEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceE
Q psy3725 454 DTKKIYQ-MDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQ 532 (760)
Q Consensus 454 ~~k~V~Q-I~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~ 532 (760)
+.+..+| |++- -+.|.+-+|....|+.+++..-.- .... ++. ..|..|..-.+. .|.++..+.+ +
T Consensus 52 d~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv--~~~~-l~~----~~FgeGit~~g~---~Ly~ltw~~~--~ 117 (268)
T 3nok_A 52 ATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQP--VWME-RLG----NIFAEGLASDGE---RLYQLTWTEG--L 117 (268)
T ss_dssp CTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSC--SEEE-ECT----TCCEEEEEECSS---CEEEEESSSC--E
T ss_pred CCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcE--EeEE-CCC----CcceeEEEEeCC---EEEEEEccCC--E
Confidence 4455544 4433 367777777666788887743221 1112 432 235544433333 4666675533 7
Q ss_pred EEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEcCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEE
Q psy3725 533 IILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAI 612 (760)
Q Consensus 533 Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~ 612 (760)
+++|... .++.+++|..+.+...|++-+. +|.+.- | .....++||+. ...+.-+
T Consensus 118 v~V~D~~----Tl~~~~ti~~~~eGwGLt~Dg~-~L~vSd----------G-s~~l~~iDp~T----------~~v~~~I 171 (268)
T 3nok_A 118 LFTWSGM----PPQRERTTRYSGEGWGLCYWNG-KLVRSD----------G-GTMLTFHEPDG----------FALVGAV 171 (268)
T ss_dssp EEEEETT----TTEEEEEEECSSCCCCEEEETT-EEEEEC----------S-SSEEEEECTTT----------CCEEEEE
T ss_pred EEEEECC----cCcEEEEEeCCCceeEEecCCC-EEEEEC----------C-CCEEEEEcCCC----------CeEEEEE
Confidence 8888853 3678889998877655554433 444432 1 11223344331 1112222
Q ss_pred EeCCCeEEEEecceEEEEcCCCCcccc-cceecCCCCcEEEeeCCeEEEEeCCeeEEEECcCCcEEEEEecCCce
Q psy3725 613 ELPRGEFLLVFHSLAAYVDSQGHKSRE-KEIMYPALPTGASYMDGQLLIFSETHVDVFNAESGDWLQTVNIRRAL 686 (760)
Q Consensus 613 ~l~~~EfLLcy~~~gvfVD~~G~rsR~-~~I~W~~~P~~~ay~~PYLlvf~~~~IEVr~i~tg~lVQtI~~~~ir 686 (760)
. |..+|++... .+|.|..- . . |+=++..+.|-+.+..||+.+.+|++..++
T Consensus 172 ~----------------V~~~g~~v~~lNeLe~~dG-~--l----yanvw~s~~I~vIDp~TG~V~~~Idl~~L~ 223 (268)
T 3nok_A 172 Q----------------VKLRGQPVELINELECANG-V--I----YANIWHSSDVLEIDPATGTVVGVIDASALT 223 (268)
T ss_dssp E----------------CEETTEECCCEEEEEEETT-E--E----EEEETTCSEEEEECTTTCBEEEEEECHHHH
T ss_pred E----------------eCCCCcccccccccEEeCC-E--E----EEEECCCCeEEEEeCCCCcEEEEEECCCCc
Confidence 2 3334544422 34555422 0 1 233345788999999999999999887654
No 285
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=56.21 E-value=2.9e+02 Score=32.01 Aligned_cols=245 Identities=7% Similarity=0.087 Sum_probs=123.9
Q ss_pred CCeeEEEEecCCCeEEEEEc-CCCCC--CceEEcC---------CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCcc
Q psy3725 422 TKKIYQMDYIPKEQLLVVLA-GKQRY--VQIARVG---------DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALD 489 (760)
Q Consensus 422 ~~~i~Caa~~~~~rllvGTe-~l~~~--~~l~rv~---------~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~ 489 (760)
-+.|+|.+.-..+.|.+||+ |+.+- ..+.... ....|..|..-++-.| -+-+. .-|..|+...-
T Consensus 42 ~n~v~~I~qD~~G~lWigT~~GL~ryDG~~f~~~~~~~~~~~~l~~n~I~~i~~d~~g~l-WigT~--~Gl~~yd~~~~- 117 (795)
T 4a2l_A 42 QSTVFSIDQDKRGNMWFATYDGVNKYDGYAFTVYQHNEDDPNSIANDISRIVKTDSQGRV-WIGTR--DGLSRYDEEKD- 117 (795)
T ss_dssp SSCEEEEEECTTSCEEEEETTEEEEECSSCEEEECCCTTCTTSCSCSCEEEEEECTTSCE-EEEES--SCEEEEETTTT-
T ss_pred cceeEEEEEcCCCCEEEeecCcCcccCCCceEEEeCCCCCCCcccccceeEEEECCCCCE-EEEeC--CchheeCCCCC-
Confidence 56799988644567999999 65331 1333332 1234777765554443 33343 35777765210
Q ss_pred CCCcceeecCcc--cc---eEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecC-Cc-ceEEEE
Q psy3725 490 GDEVEWVKIPET--KG---CLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILP-TL-AQCIHI 562 (760)
Q Consensus 490 ~~~~~~~kl~et--Kg---c~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP-~~-~~sl~~ 562 (760)
.+..+... .+ ...+. ...++ .|.|+... .|++|.....+ |..+.. ..+ .. +.+|..
T Consensus 118 ----~f~~~~~~~~~~~~~i~~i~--~d~~g----~lwi~t~~----gl~~~~~~~~~--~~~~~~-~~~~~~~i~~i~~ 180 (795)
T 4a2l_A 118 ----IFQNFFYEKNGKHLQVNGIE--EISPE----QLLISTPE----GLIMFDIKESK--FIDDSF-STAMHKTIASTLY 180 (795)
T ss_dssp ----EEEEECCEETTEECCCCEEE--EEETT----EEEEEETT----EEEEEETTTTE--EECSSS-CHHHHTCCEEEEE
T ss_pred ----eEEeccccccCCCceEEEEE--ECCCC----CEEEEECC----ceEEEECCCCE--EEeccC-CCCCCcceEEEEE
Confidence 11111110 00 11111 12223 35666644 68888753322 222111 111 12 667777
Q ss_pred ecCceEEEEEc-CCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEEEecceEEE-EcCCCCccccc
Q psy3725 563 FSEGRLCVGYQ-SGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVFHSLAAY-VDSQGHKSREK 640 (760)
Q Consensus 563 ~~~~~LcVG~~-~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~~~gvf-VD~~G~rsR~~ 640 (760)
-.+|.|.||+. .|...++.. +.....+.... ......+++.-.++.+.+.-..-|+| .|..+...+.
T Consensus 181 d~~g~lwigt~~~Gl~~~~~~-~~~~~~~~~~~---------~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~- 249 (795)
T 4a2l_A 181 RQGDQIYIGTSTDGLYTYSIT-QKTFEKVIPIL---------GTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKN- 249 (795)
T ss_dssp EETTEEEEEESSSCEEEEETT-TCCEEECC-------------CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEE-
T ss_pred CCCCCEEEEECCCCEEEEeCC-CCeEEEecCCC---------CCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEE-
Confidence 77779999997 588888875 33333221110 01122355555677777776555665 4554432211
Q ss_pred ceecC--------CCCc-EEEee-CCeEEEEeCCeeEEEECcCCcEEEEE---------ecCCceec--CCCCCEEEEec
Q psy3725 641 EIMYP--------ALPT-GASYM-DGQLLIFSETHVDVFNAESGDWLQTV---------NIRRALPL--DTRGSLCFSLA 699 (760)
Q Consensus 641 ~I~W~--------~~P~-~~ay~-~PYLlvf~~~~IEVr~i~tg~lVQtI---------~~~~ir~L--~s~G~l~l~s~ 699 (760)
+... .... ++... ...|.+-..++|-+++..++.+.... +...|+-+ ..+|.|.+++.
T Consensus 250 -~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~ 328 (795)
T 4a2l_A 250 -YLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTY 328 (795)
T ss_dssp -ECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEES
T ss_pred -eecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEEC
Confidence 1111 1111 22222 33566656669999998888766542 12334433 36888988874
No 286
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=56.18 E-value=24 Score=44.00 Aligned_cols=37 Identities=8% Similarity=0.144 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy3725 82 SLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKM 118 (760)
Q Consensus 82 al~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~ 118 (760)
.|+.|.+..+.+.+++.+...+...++.++.+.+.+.
T Consensus 900 ~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 900 KLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 287
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=56.13 E-value=11 Score=40.37 Aligned_cols=46 Identities=11% Similarity=0.168 Sum_probs=32.4
Q ss_pred ceeeeeecc---cCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHHhhcC
Q psy3725 358 PCIFRITTS---LMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILKRNN 405 (760)
Q Consensus 358 p~if~it~s---~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l~~~~ 405 (760)
...|.|... ..+.| ...+.|.|.|..+|++|+.+|..+..--.++.
T Consensus 324 ~~~f~i~~~~~~~~~~~--~~~~~l~A~s~~eK~~W~~~i~~~i~~~~~~~ 372 (377)
T 1foe_A 324 NAVCEIVHVKSESEGRP--ERVFHLCCSSPESRKDFLKSVHSILRDKHRRQ 372 (377)
T ss_dssp CCEEEEEECCBTGGGBC--CEEEEEEESSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHhccccccCCC--cceEEEEeCCHHHHHHHHHHHHHHhhHHhhhh
Confidence 456766421 12333 36789999999999999999998887554443
No 288
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=55.72 E-value=2.5e+02 Score=34.79 Aligned_cols=83 Identities=11% Similarity=0.218 Sum_probs=55.8
Q ss_pred eecCcccceEEEEeeeeCCCccceEEEEEEecC-------CceEEEEEEecCCcccceeeeeEecCCcceEEEEecCceE
Q psy3725 496 VKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQ-------NSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRL 568 (760)
Q Consensus 496 ~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~-------~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~L 568 (760)
+.+++...+...++....+.. ..+++|+.-.. .+=.|++|++... .++.+.+..+.++|.+|+-++. +|
T Consensus 823 ~~l~~nE~~~sv~~v~~~~~~-~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~--kL~lv~~~~v~g~v~al~~~~g-~L 898 (1158)
T 3ei3_A 823 HQFLQNEYALSLVSCKLGKDP-NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG--KLQTVAEKEVKGAVYSMVEFNG-KL 898 (1158)
T ss_dssp EECCTTEEEEEEEEECCTTCC-CCEEEEEEEECCTTCSSCCCEEEEEEEEETT--EEEEEEEEEESSCEEEEEEETT-EE
T ss_pred EeCCCCcceEEEEEEEEccCC-CEEEEEEeeecCCCCCCCCceEEEEEEEECC--EEEEEEEEEcCCcCEEEeeeCC-EE
Confidence 344444444444444433321 22777776331 2346888888643 3666777888999999999976 99
Q ss_pred EEEEcCCeEEEEec
Q psy3725 569 CVGYQSGFSIYKFS 582 (760)
Q Consensus 569 cVG~~~gF~ivdl~ 582 (760)
.+|..+...+|++.
T Consensus 899 la~ig~~l~vy~l~ 912 (1158)
T 3ei3_A 899 LASINSTVRLYEWT 912 (1158)
T ss_dssp EEEETTEEEEEEEC
T ss_pred EEEcCCEEEEEECC
Confidence 99999999999996
No 289
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=55.70 E-value=24 Score=37.55 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=35.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 91 TQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 91 q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
+.+.||+.+.....++.+.+++.++.+++++...|..|+.++.+++.
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777888888888888888888888887777653
No 290
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=55.64 E-value=26 Score=39.41 Aligned_cols=32 Identities=9% Similarity=0.215 Sum_probs=16.1
Q ss_pred eEEEeeCCHHHHHHHHHHHHHHHHHHhhcCCC
Q psy3725 376 HTLMLADSDTEKTKWVVALSELHRILKRNNLP 407 (760)
Q Consensus 376 ~l~LlA~S~~ek~kWv~~L~~~~~~l~~~~~~ 407 (760)
.++.++..++..+..-+.++.+.+++++-.++
T Consensus 302 E~~~f~~pe~s~~e~e~ml~~~e~il~~LgLp 333 (485)
T 3qne_A 302 EQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLP 333 (485)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEeCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 45555555444444444444455566654443
No 291
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=55.23 E-value=15 Score=29.62 Aligned_cols=30 Identities=7% Similarity=0.083 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 104 LIAAQKEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 104 ~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
...+|.++.+.+..|.+|..|++.|+.++.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777888888888888888877664
No 292
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=54.92 E-value=11 Score=37.68 Aligned_cols=33 Identities=18% Similarity=0.539 Sum_probs=27.8
Q ss_pred ceeeeeecccccccccceEEEEEEEeCcEEEEEec
Q psy3725 282 AYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDI 316 (760)
Q Consensus 282 ~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~ 316 (760)
..+||+ .+.+|..++|+++|++|.++.|.+|..
T Consensus 22 ~~~g~l--~~~~~~~~~w~~rw~vl~~~~~~~~~~ 54 (228)
T 3tfm_A 22 YFHSFL--YMNGGLMNSWKRRWCVLKDETFLWFRS 54 (228)
T ss_dssp CEEEEE--EECCTTTCCCEEEEEEEETTEEEEESS
T ss_pred ceEEEE--eecCcccccceEEEEEEeCCEEEEecc
Confidence 357998 455888899999999999999988864
No 293
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=54.25 E-value=48 Score=27.92 Aligned_cols=47 Identities=15% Similarity=0.320 Sum_probs=30.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHH------------HHHHHHhhhHHHHHHHHh
Q psy3725 91 TQISEELSKTRSELIAAQKEICDFRLKME------------SVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 91 q~i~eeL~k~~~~~~~~e~~l~e~e~~~~------------~l~~e~~~l~~e~~~l~~ 137 (760)
+.|++|++..-..+..+.+||+++++..+ .=..++..++.++.++++
T Consensus 8 ~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkr 66 (78)
T 2ic6_A 8 KEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKR 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777788888888888766543 223445556666666553
No 294
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=54.16 E-value=40 Score=35.83 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=29.1
Q ss_pred ceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHH
Q psy3725 358 PCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRIL 401 (760)
Q Consensus 358 p~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l 401 (760)
..+|-+..+. .....+.|.|.|..+|+.|+..|.++...+
T Consensus 334 ~~~~~i~~~~----~~~~~~~l~A~s~~ek~~W~~~I~~ai~~~ 373 (377)
T 3p6a_A 334 KAFYVLFTWD----QEAQIYELVAQTVSERKNWCALITETAGSL 373 (377)
T ss_dssp TEEEEEETTC----TTCCEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred ceeEEEecCC----CCCeeEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 4566564322 223567899999999999999999987643
No 295
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
Probab=54.15 E-value=59 Score=29.35 Aligned_cols=101 Identities=7% Similarity=0.121 Sum_probs=54.2
Q ss_pred cceeeeeecccccccccceEEEEEEEeCcEEEEEecCCCCCCCCccceeEEeecCCCCeEEEe-eccCcccccCCCccce
Q psy3725 281 TAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSG-VRESDVIHATKKDIPC 359 (760)
Q Consensus 281 t~~eG~vkvp~~~~~kkgw~r~~~~l~~~kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~-V~~sdvi~a~~~dip~ 359 (760)
..+.|+..|.... +++-+|..+-.+..=||. ... +....|....-..|.|. .+.|.. |.. +-|+
T Consensus 10 Ll~q~~f~V~~~~--~k~~eR~vFLFe~~ilf~-K~~-~~~~~~~Y~~K~~ikl~--~~~lte~~~~---------~d~~ 74 (119)
T 1fho_A 10 IIRHDAFQVWEGD--EPPKLRYVFLFRNKIMFT-EQD-ASTSPPSYTHYSSIRLD--KYNIRQHTTD---------EDTI 74 (119)
T ss_dssp SSEEEEEEECSTT--CSCEEEEEEEETTEEEEE-EEC-CSSSSCCCSSCCEEESS--SCEEEEECTT---------CCEE
T ss_pred ccccCceEEEeCC--CCcceEEEEEecCcEEEE-EEe-cCCCCCcEEEeeEEeec--eeEEEecCCC---------CCCc
Confidence 4578888887643 455555544444433333 222 22223333333344442 344432 221 2368
Q ss_pred eeeeecccCCCCCCcceEEE--eeCCHH-HHHHHHHHHHHHHHHH
Q psy3725 360 IFRITTSLMDPPGTKNHTLM--LADSDT-EKTKWVVALSELHRIL 401 (760)
Q Consensus 360 if~it~s~l~~~~~~~~l~L--lA~S~~-ek~kWv~~L~~~~~~l 401 (760)
-|.|-... .+ ....+ -|+|.. .|+.|+..|.+++...
T Consensus 75 kFeiw~~~--~~---~~~il~~qA~s~e~~K~~Wv~~I~~~~~~~ 114 (119)
T 1fho_A 75 VLQPQEPG--LP---SFRIKPKDFETSEYVRKAWLRDIAEEQEKY 114 (119)
T ss_dssp EEECCSTT--CC---CBCCCCCSSSSCSHHHHHHHHHHHTCCHHH
T ss_pred EEEEccCC--CC---ceEEEeeecCCcHHHHHHHHHHHHHHHHHH
Confidence 88885321 11 12233 588998 9999999999876644
No 296
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=53.89 E-value=1.8e+02 Score=29.09 Aligned_cols=118 Identities=8% Similarity=0.044 Sum_probs=64.1
Q ss_pred CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcce-eecCc-ccceEEEEeeeeCCCccceEEEEEEecCCc
Q psy3725 453 GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEW-VKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNS 530 (760)
Q Consensus 453 ~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~-~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~ 530 (760)
++...|..|.+-+...-+++-++.++.|+++++..-......+ ..+.. +..+...+. ...+. +|+.+-. .
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~--s~dg~---~l~s~s~---D 86 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL--TADGA---YALSASW---D 86 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEE--CTTSS---EEEEEET---T
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEE--CCCCC---EEEEEeC---C
Confidence 4566799999988664444445668899999874322100000 11111 112222221 12233 4444432 2
Q ss_pred eEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCc-eEEEEEcCC-eEEEEec
Q psy3725 531 SQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFS 582 (760)
Q Consensus 531 ~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~ 582 (760)
-+|.+|.+..++ .+..+. ...++.++.|.+++ .|+.|...+ -.++|+.
T Consensus 87 ~~v~~wd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~ 137 (319)
T 3frx_A 87 KTLRLWDVATGE----TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137 (319)
T ss_dssp SEEEEEETTTTE----EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred CEEEEEECCCCC----eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 278899976543 233343 35678899998775 455566544 6677775
No 297
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=53.50 E-value=26 Score=31.35 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=10.5
Q ss_pred chhhHHHHHHHhhhHHHHH
Q psy3725 66 RRSQKLEKMELLNLQSSLN 84 (760)
Q Consensus 66 rr~~k~~~~~~l~lqsal~ 84 (760)
.|..|+++++.=+|+..|+
T Consensus 16 ~~~~~~~~~ei~~L~~~L~ 34 (110)
T 2v4h_A 16 PRGSHMASMQLEDLRQQLQ 34 (110)
T ss_dssp CTTCCSSCCHHHHHHHHHH
T ss_pred cchhHhhHHHHHHHHHHHH
Confidence 3445555666666655554
No 298
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=53.07 E-value=46 Score=29.02 Aligned_cols=27 Identities=7% Similarity=0.320 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKM 118 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~ 118 (760)
.|++|++..-..+..+.+||+++++..
T Consensus 9 eLq~e~~~~E~QL~~A~QKLkdA~~~~ 35 (96)
T 2ic9_A 9 EVQDNITLHEQRLVTTRQKLKDAERAV 35 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777777777766543
No 299
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=52.39 E-value=55 Score=35.34 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.4
Q ss_pred ceEEEeeCCHHHHHHHHHHHHHHHHH
Q psy3725 375 NHTLMLADSDTEKTKWVVALSELHRI 400 (760)
Q Consensus 375 ~~l~LlA~S~~ek~kWv~~L~~~~~~ 400 (760)
.++.|.|.|..+|+.|+.+|.++...
T Consensus 384 ~~~~l~A~s~~ek~~W~~~I~~a~~~ 409 (418)
T 3t06_A 384 QIYELVALTSSDKNTWMELLEEAVRN 409 (418)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999988763
No 300
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=52.32 E-value=1e+02 Score=34.59 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=25.3
Q ss_pred HHHhhHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 89 AKTQISEELSKTRSEL----IAAQKEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 89 akq~i~eeL~k~~~~~----~~~e~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
.+.+|.+||++-...+ .+-=+.++.+++.++++..||.+|+.-+.
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666665432211 11115566666777777777777766664
No 301
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=51.44 E-value=49 Score=32.08 Aligned_cols=58 Identities=10% Similarity=0.156 Sum_probs=40.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q psy3725 70 KLEKMELLNLQSSLNSEIQAK-TQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRR 127 (760)
Q Consensus 70 k~~~~~~l~lqsal~~Ei~ak-q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~ 127 (760)
+-.+-.+...|+.||..|+.. +.+..+..+++.....+|+++++.+...+.|..++.+
T Consensus 30 ~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k 88 (174)
T 2p22_A 30 DYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAK 88 (174)
T ss_dssp HHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788899998887654 4456777777777777777777777777766664443
No 302
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=51.18 E-value=19 Score=26.23 Aligned_cols=19 Identities=16% Similarity=0.412 Sum_probs=8.8
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q psy3725 118 MESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 118 ~~~l~~e~~~l~~e~~~l~ 136 (760)
...|..|+..|++++..++
T Consensus 22 laaleselqalekklaalk 40 (48)
T 1g6u_A 22 LAALESELQALEKKLAALK 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 303
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.14 E-value=58 Score=35.92 Aligned_cols=32 Identities=13% Similarity=0.031 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKMESVSM 123 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~ 123 (760)
.+++|..+.++.+..+++.+++..++.++..+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 439 MYQHKETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 44444444444444444444444444444333
No 304
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=51.07 E-value=61 Score=28.40 Aligned_cols=70 Identities=16% Similarity=0.348 Sum_probs=53.6
Q ss_pred ccchhhHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH---------HHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 64 RDRRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSEL---------IAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 64 ~~rr~~k~~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~---------~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
..+|-.|| +..+-+||..++.|.++|..| .|+...+ -+.|.+|.|+..++.-|..|+.++..-+.|
T Consensus 13 peqRkkkL-~~Ki~el~~ei~ke~~~regl----~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 13 PEQQRKRL-QQQLEERSRELQKEVDQREAL----KKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666 456889999999999998774 4444432 234788999999999999999999999988
Q ss_pred HHhh
Q psy3725 135 LQSR 138 (760)
Q Consensus 135 l~~~ 138 (760)
+..+
T Consensus 88 ~e~~ 91 (98)
T 2ke4_A 88 AESR 91 (98)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7643
No 305
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.19 E-value=7.3 Score=32.48 Aligned_cols=39 Identities=44% Similarity=1.030 Sum_probs=30.6
Q ss_pred CCcccCCCcccccccccCeeeecCCCcccccccccc-----cCCCCCC
Q psy3725 220 SPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDK-----VPPSCPV 262 (760)
Q Consensus 220 ~pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~-----vp~~C~~ 262 (760)
....|..|.+.+. +|.+|..|+...|..|..+ -...||.
T Consensus 14 ~i~~C~IC~~~i~----~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~ 57 (74)
T 2ct0_A 14 AVKICNICHSLLI----QGQSCETCGIRMHLPCVAKYFQSNAEPRCPH 57 (74)
T ss_dssp SSCBCSSSCCBCS----SSEECSSSCCEECHHHHHHHSTTCSSCCCTT
T ss_pred CCCcCcchhhHcc----cCCccCCCCchhhHHHHHHHHHhcCCCCCCC
Confidence 4568999998763 7899999999999999752 2256765
No 306
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=50.13 E-value=2.9e+02 Score=30.27 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=63.4
Q ss_pred cCCCeEEEEEc--C------CCCCCceEEcCCCC--CeeEEEEecCCCeEEEEECC---CC--eEEEEECCCccCCCcce
Q psy3725 431 IPKEQLLVVLA--G------KQRYVQIARVGDTK--KIYQMDYIPEEQLLVVLAGK---QR--YVRLVPVRALDGDEVEW 495 (760)
Q Consensus 431 ~~~~rllvGTe--~------l~~~~~l~rv~~~k--~V~QI~Vi~e~~lLlvLsgk---~r--~L~l~~L~~L~~~~~~~ 495 (760)
.|+.+|+++.+ + ++.. ...++.... .|..+...++ ++++ .++. +. .|+.+++.. ++. .
T Consensus 31 ~DG~~la~~s~~~g~~~lw~~~~g-~~~~lt~~~~~~~~~~~~spd-~~l~-~~~~~~g~~~~~l~~~~~~~-~g~---~ 103 (582)
T 3o4h_A 31 VDGDKLLVVGFSEGSVNAYLYDGG-ETVKLNREPINSVLDPHYGVG-RVIL-VRDVSKGAEQHALFKVNTSR-PGE---E 103 (582)
T ss_dssp ETTTEEEEEEEETTEEEEEEEETT-EEEECCSSCCSEECEECTTCS-EEEE-EEECSTTSCCEEEEEEETTS-TTC---C
T ss_pred CCCCeEEEEEccCCceeEEEEcCC-CcEeeecccccccccccCCCC-eEEE-EeccCCCCcceEEEEEeccC-CCc---c
Confidence 46667776654 2 2222 556655433 5777777777 5444 3432 23 344454410 111 1
Q ss_pred eecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEcCC
Q psy3725 496 VKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQSG 575 (760)
Q Consensus 496 ~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~g 575 (760)
..+....+...++... ++.. .+++.-. .+ .+.+|.+..++ .+.+. ..|. .++.|..+|+..+.....
T Consensus 104 ~~l~~~~~~~~~~~s~-dg~~---~~~~s~~-~~--~~~l~d~~~g~--~~~l~--~~~~--~~~~~spDG~~la~~~~~ 170 (582)
T 3o4h_A 104 QRLEAVKPMRILSGVD-TGEA---VVFTGAT-ED--RVALYALDGGG--LRELA--RLPG--FGFVSDIRGDLIAGLGFF 170 (582)
T ss_dssp EECTTSCSBEEEEEEE-CSSC---EEEEEEC-SS--CEEEEEEETTE--EEEEE--EESS--CEEEEEEETTEEEEEEEE
T ss_pred ccccCCCCceeeeeCC-CCCe---EEEEecC-CC--CceEEEccCCc--EEEee--cCCC--ceEEECCCCCEEEEEEEc
Confidence 1333333333333322 2222 2333322 22 23377765443 12222 2233 678899888666633222
Q ss_pred ------eEEEEecCCCCceeec
Q psy3725 576 ------FSIYKFSQDNRPIPLI 591 (760)
Q Consensus 576 ------F~ivdl~~~~~~~~Ll 591 (760)
..++|+. ++....|.
T Consensus 171 ~~~~~~i~~~d~~-~g~~~~l~ 191 (582)
T 3o4h_A 171 GGGRVSLFTSNLS-SGGLRVFD 191 (582)
T ss_dssp ETTEEEEEEEETT-TCCCEEEC
T ss_pred CCCCeEEEEEcCC-CCCceEee
Confidence 3455654 34444443
No 307
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=49.78 E-value=36 Score=37.91 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=14.4
Q ss_pred cccchhhHHHHHHHhhhHHHHHHHHHH
Q psy3725 63 WRDRRSQKLEKMELLNLQSSLNSEIQA 89 (760)
Q Consensus 63 w~~rr~~k~~~~~~l~lqsal~~Ei~a 89 (760)
|..||....+..++..-+-++..+|.+
T Consensus 37 ~~~~r~~~~~~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 37 DTEWRTKLKEINRLRHERNKIAVEIGK 63 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555543
No 308
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=49.30 E-value=65 Score=36.33 Aligned_cols=32 Identities=16% Similarity=0.042 Sum_probs=15.9
Q ss_pred ceEEEeeCC--HHHHHHHHHHHHHHHHHHhhcCC
Q psy3725 375 NHTLMLADS--DTEKTKWVVALSELHRILKRNNL 406 (760)
Q Consensus 375 ~~l~LlA~S--~~ek~kWv~~L~~~~~~l~~~~~ 406 (760)
..++.++.. ++..+.--+.++.+.+++++-.+
T Consensus 334 vE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgL 367 (501)
T 1wle_A 334 VEMFGVTGPGLEQSSELLEEFLSLQMEILTELGL 367 (501)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 345556655 34444333444455556665444
No 309
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=49.18 E-value=47 Score=37.10 Aligned_cols=41 Identities=7% Similarity=0.065 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 93 ISEELSKTRSELIAAQ----KEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e----~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
.|.||.+|+.+|..++ ++|.|..++|.++..|.+..++.-+
T Consensus 14 yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa 58 (497)
T 3iox_A 14 YQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNA 58 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4556666666665443 4455555666666666655554433
No 310
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=49.18 E-value=58 Score=33.10 Aligned_cols=50 Identities=14% Similarity=0.270 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhccC
Q psy3725 93 ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLESG 142 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~~g 142 (760)
++.||.........++.++.+.+....++..++.+++.++++++.+.++.
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~ 79 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI 79 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777777777777777777766655543
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=48.83 E-value=2.1e+02 Score=28.30 Aligned_cols=36 Identities=11% Similarity=0.482 Sum_probs=27.4
Q ss_pred EEEeeCCeEEEEe-------CCeeEEEECcCCcEEEEEecCCc
Q psy3725 650 GASYMDGQLLIFS-------ETHVDVFNAESGDWLQTVNIRRA 685 (760)
Q Consensus 650 ~~ay~~PYLlvf~-------~~~IEVr~i~tg~lVQtI~~~~i 685 (760)
+++....+|+++. .+.|+++++.++.|.+.-+++..
T Consensus 201 ~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 243 (301)
T 2vpj_A 201 GVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243 (301)
T ss_dssp EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred eEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc
Confidence 4566678899886 46799999999999987544443
No 312
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=47.71 E-value=2.5e+02 Score=28.76 Aligned_cols=141 Identities=12% Similarity=0.051 Sum_probs=87.1
Q ss_pred ceeeeeEecCCcc--eEEEEecCceEEEEEcC----CeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCe
Q psy3725 545 HKRLHEVILPTLA--QCIHIFSEGRLCVGYQS----GFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGE 618 (760)
Q Consensus 545 fkk~kE~~lP~~~--~sl~~~~~~~LcVG~~~----gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~E 618 (760)
++.++++..+..+ +.|.|. ++.|.++... .-..+|+. +++...-+..+ ....+.++...++.=
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~-Tgkv~~~~~l~---------~~~FgeGit~~g~~l 99 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIE-SGKTLQQIELG---------KRYFGEGISDWKDKI 99 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTT-TCCEEEEEECC---------TTCCEEEEEEETTEE
T ss_pred eEEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECC-CCcEEEEEecC---------CccceeEEEEeCCEE
Confidence 3456677776666 778888 4588887743 35667776 45443222111 122333344443333
Q ss_pred EEEEe-cceEEEEcC-CCCcccccceecCCCCcEEEeeCCeEEEEe-CCeeEEEECcCCcEEEEEecC----Cceec---
Q psy3725 619 FLLVF-HSLAAYVDS-QGHKSREKEIMYPALPTGASYMDGQLLIFS-ETHVDVFNAESGDWLQTVNIR----RALPL--- 688 (760)
Q Consensus 619 fLLcy-~~~gvfVD~-~G~rsR~~~I~W~~~P~~~ay~~PYLlvf~-~~~IEVr~i~tg~lVQtI~~~----~ir~L--- 688 (760)
|.+.. ++.++.+|. .++..+ .|..++.+.++++..-.|++.+ .+.|-+++..|.+.+.+|... .++.+
T Consensus 100 y~ltw~~~~v~v~D~~t~~~~~--ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL 177 (262)
T 3nol_A 100 VGLTWKNGLGFVWNIRNLRQVR--SFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL 177 (262)
T ss_dssp EEEESSSSEEEEEETTTCCEEE--EEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE
T ss_pred EEEEeeCCEEEEEECccCcEEE--EEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee
Confidence 44443 556666786 345443 4777777778888777787776 567999999999999998652 22222
Q ss_pred -CCCCCEEEEe
Q psy3725 689 -DTRGSLCFSL 698 (760)
Q Consensus 689 -~s~G~l~l~s 698 (760)
-.+|.||+..
T Consensus 178 e~~~G~lyan~ 188 (262)
T 3nol_A 178 EWVDGEIFANV 188 (262)
T ss_dssp EEETTEEEEEE
T ss_pred EEECCEEEEEE
Confidence 2478888655
No 313
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.35 E-value=1.1e+02 Score=27.70 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=9.3
Q ss_pred hHHHHHHHhhhHHHHHHHHHH
Q psy3725 69 QKLEKMELLNLQSSLNSEIQA 89 (760)
Q Consensus 69 ~k~~~~~~l~lqsal~~Ei~a 89 (760)
.|-+-+++-.-=+.|++||.+
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~ 54 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDN 54 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 343444433333455555544
No 314
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=47.34 E-value=83 Score=26.48 Aligned_cols=53 Identities=17% Similarity=0.257 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 81 SSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 81 sal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
..-++||+|=...++||+.=+..+- --+.+.+....+|..+|+.++.+.+||.
T Consensus 21 ~q~qaEl~sLrrT~~EL~~G~~KL~---~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 21 DRAQAELNALKRTEEDLKKGHQKLE---EMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777765443332 3345556677777778888888877765
No 315
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=47.15 E-value=67 Score=28.98 Aligned_cols=27 Identities=7% Similarity=0.322 Sum_probs=12.1
Q ss_pred HHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 110 EICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 110 ~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+++|.+-.+..|.+++.....|+|+++
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 316
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=46.88 E-value=1.1e+02 Score=26.62 Aligned_cols=56 Identities=13% Similarity=0.258 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 81 SSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 81 sal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
-|+.+--||=|+-.+.|+..+...-.--+++++++.+..+|...+=.++.|+..++
T Consensus 48 ~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~k 103 (114)
T 2xzr_A 48 KAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIK 103 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45566667777766777666666666667888888888888887777777776554
No 317
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=46.56 E-value=89 Score=43.07 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q psy3725 18 KDARSYLQALTTKTTQELEYLKH 40 (760)
Q Consensus 18 k~ar~ylq~la~k~~~ele~lr~ 40 (760)
|..=...++-+.+..+|++..|.
T Consensus 1975 k~~v~~~~~~~~~~~~ei~~~k~ 1997 (3245)
T 3vkg_A 1975 QKDARELQVQLDVRNKEIAVQKV 1997 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555555666666664
No 318
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=45.75 E-value=34 Score=23.95 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 106 AAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 106 ~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
++|-|+.+.=.++.+|..|+++|+.-+
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 357778888888888888888887654
No 319
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.81 E-value=1.5e+02 Score=32.46 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 93 ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+.||+.+..+.....+..++.++.+..++...|+.|+.++.++.
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34555555556666777778888888888888888887777665
No 320
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=44.56 E-value=1.3e+02 Score=26.94 Aligned_cols=61 Identities=11% Similarity=0.203 Sum_probs=41.9
Q ss_pred HHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 74 MELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 74 ~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
.++-+|+..++.-..-|..+.-|+..++.+.-.+..|..+--....++..++..+++.+++
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~ 80 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN 80 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccH
Confidence 3455677777777777777777777777777777666666555556666666666666655
No 321
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=44.36 E-value=32 Score=26.79 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 107 AQKEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 107 ~e~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
+..++.+.++++.+|..+++.++.+++
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555443
No 322
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=44.29 E-value=2e+02 Score=34.28 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy3725 17 EKDARSYLQALTTKTTQELEYLK 39 (760)
Q Consensus 17 ek~ar~ylq~la~k~~~ele~lr 39 (760)
|.+|||-|.. .||.+|.|.=+
T Consensus 681 eQea~g~Ler--qki~d~a~aE~ 701 (861)
T 2zuo_A 681 EQEARGRLER--QKILDQSEAEK 701 (861)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHhhhhHHH--HHHHHHHHHHH
Confidence 4566666543 35555554433
No 323
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=44.20 E-value=2.6e+02 Score=28.11 Aligned_cols=230 Identities=9% Similarity=0.037 Sum_probs=112.8
Q ss_pred CCeeEEEEe-----c--CCCeEEEEEc-C------CCCC------CceEE--cCCCCCeeEEEEecCCCeEEEEECCCCe
Q psy3725 422 TKKIYQMDY-----I--PKEQLLVVLA-G------KQRY------VQIAR--VGDTKKIYQMDYIPEEQLLVVLAGKQRY 479 (760)
Q Consensus 422 ~~~i~Caa~-----~--~~~rllvGTe-~------l~~~------~~l~r--v~~~k~V~QI~Vi~e~~lLlvLsgk~r~ 479 (760)
...|+|.+. . ++..|+-|.. + +... ....+ .++...|..+.+.++..+++. ++.+..
T Consensus 21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s-~s~D~~ 99 (343)
T 2xzm_R 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS-SSWDKT 99 (343)
T ss_dssp SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE-EETTSE
T ss_pred hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE-EcCCCc
Confidence 556888864 2 4445888876 2 2211 01222 235668999999988777665 445789
Q ss_pred EEEEECCCccCCCcceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcce
Q psy3725 480 VRLVPVRALDGDEVEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQ 558 (760)
Q Consensus 480 L~l~~L~~L~~~~~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~ 558 (760)
|+++++..-.. ...+.. ...+..++ ....+. +|+.+-. .-+|.+|.+.... .+...........+.
T Consensus 100 v~lwd~~~~~~----~~~~~~h~~~v~~v~--~sp~~~---~l~s~~~---d~~i~~wd~~~~~-~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 100 LRLWDLRTGTT----YKRFVGHQSEVYSVA--FSPDNR---QILSAGA---EREIKLWNILGEC-KFSSAEKENHSDWVS 166 (343)
T ss_dssp EEEEETTSSCE----EEEEECCCSCEEEEE--ECSSTT---EEEEEET---TSCEEEEESSSCE-EEECCTTTSCSSCEE
T ss_pred EEEEECCCCcE----EEEEcCCCCcEEEEE--ECCCCC---EEEEEcC---CCEEEEEeccCCc-eeeeecccCCCceee
Confidence 99999853210 112221 11222222 222333 3444432 2268888864221 111000012345677
Q ss_pred EEEEecCc-----------eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEe-CCCeEEEEe--
Q psy3725 559 CIHIFSEG-----------RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIEL-PRGEFLLVF-- 623 (760)
Q Consensus 559 sl~~~~~~-----------~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l-~~~EfLLcy-- 623 (760)
++.|.+++ .|+.|...| ..++|.. ...... ......++..+.. +++.+|+.-
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~-----------~~~h~~~v~~~~~s~~g~~l~sgs~ 233 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYT-----------FKAHESNVNHLSISPNGKYIATGGK 233 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEE-----------EECCSSCEEEEEECTTSSEEEEEET
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEE-----------EcCccccceEEEECCCCCEEEEEcC
Confidence 88887653 455565544 4455532 111110 1112234433444 345565533
Q ss_pred cceEEEEcCCCCcccccceecCCCCcEEEeeC--CeEEEEeCCeeEEEECcCCcEEE
Q psy3725 624 HSLAAYVDSQGHKSREKEIMYPALPTGASYMD--GQLLIFSETHVDVFNAESGDWLQ 678 (760)
Q Consensus 624 ~~~gvfVD~~G~rsR~~~I~W~~~P~~~ay~~--PYLlvf~~~~IEVr~i~tg~lVQ 678 (760)
|..-.+-|..........+.-.....+++|.. ++|.+-.++.|.|+++.++..+.
T Consensus 234 dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 234 DKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAP 290 (343)
T ss_dssp TCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCS
T ss_pred CCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCc
Confidence 22333334411111111222233345666653 36766678899999999887665
No 324
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=44.05 E-value=37 Score=23.88 Aligned_cols=27 Identities=7% Similarity=0.039 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 106 AAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 106 ~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
++|-|+.+.=.++.+|..|+++|+.-+
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 356777777778888888888887654
No 325
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=43.91 E-value=2.2e+02 Score=30.45 Aligned_cols=112 Identities=12% Similarity=0.122 Sum_probs=62.5
Q ss_pred CCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEE
Q psy3725 455 TKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQII 534 (760)
Q Consensus 455 ~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl 534 (760)
...|..|..-+..+-+++.++.++.|+++++..-.. ..........+..++. ...+. +|+++-.. -+|.
T Consensus 149 ~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~---~~~~~~~~~~v~~v~w--spdg~---~lasgs~d---g~v~ 217 (434)
T 2oit_A 149 GGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK---VCATLPSTVAVTSVCW--SPKGK---QLAVGKQN---GTVV 217 (434)
T ss_dssp GGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE---EEEEECGGGCEEEEEE--CTTSS---CEEEEETT---SCEE
T ss_pred CCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc---eeeccCCCCceeEEEE--cCCCC---EEEEEcCC---CcEE
Confidence 567999999998544444455578999999854210 0111111222333332 22233 45655531 2577
Q ss_pred EEEecCCcccceeeeeEecC--------CcceEEEEecCceEEEEEcCC---------eEEEEec
Q psy3725 535 LYEITRTKTRHKRLHEVILP--------TLAQCIHIFSEGRLCVGYQSG---------FSIYKFS 582 (760)
Q Consensus 535 ~ye~~~~k~~fkk~kE~~lP--------~~~~sl~~~~~~~LcVG~~~g---------F~ivdl~ 582 (760)
+|... ++ ..+.+..| ..+.+++|..++.+++++..+ ..++++.
T Consensus 218 iwd~~-~~----~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 218 QYLPT-LQ----EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp EECTT-CC----EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred EEccC-Cc----ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence 88764 22 11223222 267789999887777776543 5677875
No 326
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.58 E-value=37 Score=29.98 Aligned_cols=50 Identities=28% Similarity=0.375 Sum_probs=28.5
Q ss_pred HHHHHHHhHHHHHHHHhhhHHHHHHHHhhhcc----CCCCCCCCccccccccccccc
Q psy3725 110 EICDFRLKMESVSMDLRRKDSQLKELQSRLES----GDILERPASQISYLDHFLKES 162 (760)
Q Consensus 110 ~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~~----g~~~~~~~s~~~~~~~~~~~~ 162 (760)
++...++++++|..|-++|++++++|..+++. |. ++.+---+++|-+.+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd---~~~~~TKVlH~~~NPa 66 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGD---YDQSRTKVLHMSLNPT 66 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSC---CCTTTEEEEEESSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cCCccCeeeeecCChH
Confidence 45556666666666666666666666555544 44 3333334666665554
No 327
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=43.53 E-value=1.4e+02 Score=24.81 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=32.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 91 TQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 91 q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
|++..|.-........++.+|++++++...+..|+..|.+.+..+.
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE 54 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTE 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4455666666677777777777777777777777777777766554
No 328
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=43.22 E-value=39 Score=23.82 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 106 AAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 106 ~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
++|-|+.+.=.++++|..|+++|+.-+
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 356666677777777777777776543
No 329
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=43.18 E-value=3.3e+02 Score=29.02 Aligned_cols=118 Identities=14% Similarity=0.191 Sum_probs=66.3
Q ss_pred CCCeeEEEEecCCCeEEEE---ECCCCeEEEEECCCccCC-----C-cceeecCc--ccceEEEEeeeeCCCccceEEEE
Q psy3725 455 TKKIYQMDYIPEEQLLVVL---AGKQRYVRLVPVRALDGD-----E-VEWVKIPE--TKGCLSFTTGPLTHTRTQHCLAL 523 (760)
Q Consensus 455 ~k~V~QI~Vi~e~~lLlvL---sgk~r~L~l~~L~~L~~~-----~-~~~~kl~e--tKgc~~f~~g~~~~~~~~~~LcV 523 (760)
...|..|..-++.+.|++. ++.+..|+++++...... . ....+.-. ...+..++..... +. +|+.
T Consensus 92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~-~~---~las 167 (434)
T 2oit_A 92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV-PS---MVAV 167 (434)
T ss_dssp SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC-TT---EEEE
T ss_pred CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC-CC---EEEE
Confidence 4569999999998877763 345678999998654110 0 00111111 1223333332211 22 4544
Q ss_pred EEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCc-eEEEEEcCC-eEEEEec
Q psy3725 524 AVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFS 582 (760)
Q Consensus 524 AvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~ 582 (760)
+-. .-+|.+|.+..... ..........+.+++|..+| .|++|...| ..++|+.
T Consensus 168 ~s~---Dg~v~iwD~~~~~~---~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 168 CLA---DGSIAVLQVTETVK---VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp EET---TSCEEEEEESSSEE---EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred EEC---CCeEEEEEcCCCcc---eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 432 22688898764421 11222345678999999765 788888765 5567764
No 330
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=42.63 E-value=2.5e+02 Score=27.45 Aligned_cols=224 Identities=7% Similarity=0.007 Sum_probs=103.9
Q ss_pred CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcce-eecCc-ccceEEEEeeeeCCCccceEEEEEEecCCc
Q psy3725 453 GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEW-VKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNS 530 (760)
Q Consensus 453 ~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~-~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~ 530 (760)
++...|+.|++-|+.+-+|+=++.++.|+++++..-......+ ..+.. ...+..++. ...+. +|+.+-. .
T Consensus 36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~--s~dg~---~l~s~~~---d 107 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI--SSDGQ---FALSGSW---D 107 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEE--CTTSS---EEEEEET---T
T ss_pred CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEE--CCCCC---EEEEEcc---c
Confidence 5677899999999865444445568899999986543211111 12221 122222222 22333 4554432 2
Q ss_pred eEEEEEEecCCcccceeeeeEecCCcceEEEEecCc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCc
Q psy3725 531 SQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDA 608 (760)
Q Consensus 531 ~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~p 608 (760)
-.|.+|....... ..........+..+.+..++ .|+.|...+ ..++|+.+.. ...... .....+
T Consensus 108 ~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~-~~~~~~----------~~~~~~ 173 (340)
T 4aow_A 108 GTLRLWDLTTGTT---TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC-KYTVQD----------ESHSEW 173 (340)
T ss_dssp SEEEEEETTTTEE---EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EEEECS----------SSCSSC
T ss_pred ccceEEeecccce---eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc-eEEEEe----------ccccCc
Confidence 2677777644321 11222233444445555443 566666544 5566664211 111111 011222
Q ss_pred eEEEEeC---CCeEEE-Ee-cceEEEEcCC-CCcccccceecC-CCCcEEEee--CCeEEEEe-CCeeEEEECcCCcEEE
Q psy3725 609 LLAIELP---RGEFLL-VF-HSLAAYVDSQ-GHKSREKEIMYP-ALPTGASYM--DGQLLIFS-ETHVDVFNAESGDWLQ 678 (760)
Q Consensus 609 l~i~~l~---~~EfLL-cy-~~~gvfVD~~-G~rsR~~~I~W~-~~P~~~ay~--~PYLlvf~-~~~IEVr~i~tg~lVQ 678 (760)
+..+... ...+++ +- |..-..-|.. |+... .+.-. +...+++|. ..||+.-. +..|-|+++.++..++
T Consensus 174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~ 251 (340)
T 4aow_A 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT--NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY 251 (340)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE
T ss_pred ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee--EecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceee
Confidence 2222221 112222 11 1111122322 22111 11111 222355554 34666555 5679999999999999
Q ss_pred EEecCC-cee--cCCCCCEEEEecC
Q psy3725 679 TVNIRR-ALP--LDTRGSLCFSLAN 700 (760)
Q Consensus 679 tI~~~~-ir~--L~s~G~l~l~s~~ 700 (760)
.+.... +.. ...++.+..++.+
T Consensus 252 ~~~~~~~v~~~~~~~~~~~~~~~~d 276 (340)
T 4aow_A 252 TLDGGDIINALCFSPNRYWLCAATG 276 (340)
T ss_dssp EEECSSCEEEEEECSSSSEEEEEET
T ss_pred eecCCceEEeeecCCCCceeeccCC
Confidence 886554 222 2345555544443
No 331
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=41.79 E-value=21 Score=29.26 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=30.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 90 KTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 90 kq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+..+.+.|+.++-....+-.-|.|+|+-+.-|.++++-||.|+.-+.
T Consensus 17 ~eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 17 KEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp ------------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777778899999999999999999999987654
No 332
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=41.09 E-value=80 Score=26.89 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 79 LQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 79 lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
+..-.+.||..++.+..|+...|-..-.+-----+.|.+.+.|..||.=|
T Consensus 33 fk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 33 LREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666555555433333333333444444444444433
No 333
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.08 E-value=1.1e+02 Score=27.99 Aligned_cols=9 Identities=33% Similarity=0.534 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q psy3725 81 SSLNSEIQA 89 (760)
Q Consensus 81 sal~~Ei~a 89 (760)
+.|++||++
T Consensus 48 q~L~~el~~ 56 (131)
T 3tnu_A 48 QNLEIELQS 56 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555543
No 334
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=40.97 E-value=3e+02 Score=27.75 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=40.7
Q ss_pred CCcEEEeeC--CeEEEEe---CCeeEEEECcCCcEEEEEecCC------------cee--cCCC-CCEEEEecCCccEEE
Q psy3725 647 LPTGASYMD--GQLLIFS---ETHVDVFNAESGDWLQTVNIRR------------ALP--LDTR-GSLCFSLANDIPYVV 706 (760)
Q Consensus 647 ~P~~~ay~~--PYLlvf~---~~~IEVr~i~tg~lVQtI~~~~------------ir~--L~s~-G~l~l~s~~~~~~~~ 706 (760)
.|..+++.. -+|++.. .+.|.+++ .+|.++.++.... ..- ++.+ |.||++....-++.+
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~ 222 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQC 222 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEE
Confidence 688999984 5777766 46788888 6788888874211 111 2344 899998765455555
Q ss_pred Ee
Q psy3725 707 YL 708 (760)
Q Consensus 707 ~~ 708 (760)
|.
T Consensus 223 ~~ 224 (329)
T 3fvz_A 223 FK 224 (329)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 335
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=40.55 E-value=79 Score=39.39 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 107 AQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 107 ~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
++.++...+.+..+|..+++.++.++++
T Consensus 911 ~e~~l~~l~~~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 911 AEEMRVRLAAKKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443
No 336
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=40.40 E-value=44 Score=27.57 Aligned_cols=33 Identities=9% Similarity=0.236 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 105 IAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 105 ~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
..+|.++.+.+..+..|..|.+.|+.+++.|+.
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777766653
No 337
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=40.29 E-value=82 Score=26.89 Aligned_cols=50 Identities=10% Similarity=0.165 Sum_probs=40.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 84 NSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 84 ~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+.|+++ ..+|+.+++..+...+...++.+.++..|..|...|..++.++.
T Consensus 13 eeEm~~---~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaE 62 (89)
T 3bas_A 13 EEEMKE---QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLE 62 (89)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445655 45799999999999999999999999999999988877665443
No 338
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.19 E-value=1.8e+02 Score=27.49 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 105 IAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 105 ~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
..+|.+....+++..+-..=++.+..++.+|+
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555555554
No 339
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=40.12 E-value=1.5e+02 Score=24.15 Aligned_cols=25 Identities=4% Similarity=0.078 Sum_probs=13.9
Q ss_pred HHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 111 ICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 111 l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
|+.++..+.+|.+.+..|.-|++.+
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555555565555543
No 340
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=40.10 E-value=2.7e+02 Score=27.13 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=42.0
Q ss_pred hhhhhhhhccchhHHHHHHHHHHHHH------HHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhh
Q psy3725 6 SKAGQEFRVSDEKDARSYLQALTTKT------TQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNL 79 (760)
Q Consensus 6 ~~~~i~qwv~dek~ar~ylq~la~k~------~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~l 79 (760)
|..|+.+-.+|+ |+.|+++++++ .++++.|++. ....+++
T Consensus 39 S~~eL~~LL~~~---~dlL~~~v~~l~~~q~~~~~~e~l~s~-------------------------------ae~ll~l 84 (192)
T 2p22_C 39 SSKEIIDLIQTH---RHQLELYVTKFNPLTDFAGKIHAFRDQ-------------------------------FKQLEEN 84 (192)
T ss_dssp TTHHHHHHHHHC---HHHHHHHGGGGSCCHHHHHHHHHHHHH-------------------------------HHHHHHH
T ss_pred CHHHHHHHHhCh---HHHHHHHHHhchhHHHHHHHHHHHHHH-------------------------------HHHHHHH
Confidence 445666666666 56677777654 6777777654 3444788
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3725 80 QSSLNSEIQAKTQISEELSKTRSELI 105 (760)
Q Consensus 80 qsal~~Ei~akq~i~eeL~k~~~~~~ 105 (760)
+..|++.++.=+..-+++++...+..
T Consensus 85 ~~~Le~~r~~l~~~l~~~~~L~~~~~ 110 (192)
T 2p22_C 85 FEDLHEQKDKVQALLENARILESKYV 110 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888876655555566666555553
No 341
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=39.98 E-value=40 Score=23.81 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 106 AAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 106 ~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
++|-|+.+.=.++.+|..|+.+|++-+
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 356777777788888888888887654
No 342
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=39.91 E-value=1.9e+02 Score=25.19 Aligned_cols=42 Identities=5% Similarity=0.065 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
.+.+||-++...+..+..+|.+.++...+...|+..|.+.+.
T Consensus 55 ~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 55 VTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666666665553
No 343
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=39.87 E-value=47 Score=23.23 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 106 AAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 106 ~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
++|-|+.+.=.++.+|..|+++|++-+
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 356677777777778888887777654
No 344
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=39.25 E-value=5e+02 Score=29.90 Aligned_cols=251 Identities=11% Similarity=0.092 Sum_probs=130.5
Q ss_pred CCeeEEEEecCCCeEEEEEc--CCC---CC-CceEEcC----------CCCCeeEEEEecCCC-eEEEEECCCCeEEEEE
Q psy3725 422 TKKIYQMDYIPKEQLLVVLA--GKQ---RY-VQIARVG----------DTKKIYQMDYIPEEQ-LLVVLAGKQRYVRLVP 484 (760)
Q Consensus 422 ~~~i~Caa~~~~~rllvGTe--~l~---~~-~~l~rv~----------~~k~V~QI~Vi~e~~-lLlvLsgk~r~L~l~~ 484 (760)
.+.|.|.+.-.+++|.|||+ |+. .. ..+.++. ....|..|..-.+-+ +.+--. +.-|+.++
T Consensus 356 ~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~--~~Gl~~~d 433 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH--AGGLSILH 433 (795)
T ss_dssp CSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET--TTEEEEEE
T ss_pred CCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC--cCceeEEe
Confidence 34577877534567999998 432 11 2444442 124577777666555 443322 24577776
Q ss_pred CCCccCCCcceeecCc----ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeE----ec-CC
Q psy3725 485 VRALDGDEVEWVKIPE----TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEV----IL-PT 555 (760)
Q Consensus 485 L~~L~~~~~~~~kl~e----tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~----~l-P~ 555 (760)
...- . ...+.. ..+-..+++-....+. |.++... -|++|.....+ |..+... .+ ..
T Consensus 434 ~~~~---~--~~~~~~~~~~l~~~~v~~i~~d~~g~----lwigt~~----Gl~~~~~~~~~--~~~~~~~~~~~~~~~~ 498 (795)
T 4a2l_A 434 RNSG---Q--VENFNQRNSQLVNENVYAILPDGEGN----LWLGTLS----ALVRFNPEQRS--FTTIEKEKDGTPVVSK 498 (795)
T ss_dssp TTTC---C--EEEECTTTSCCSCSCEEEEEECSSSC----EEEEESS----CEEEEETTTTE--EEECCBCTTCCBCCCC
T ss_pred CCCC---c--EEEeecCCCCcCCCeeEEEEECCCCC----EEEEecC----ceeEEeCCCCe--EEEccccccccccCCc
Confidence 5320 1 111110 0111122222333333 5666643 57778754332 3332211 12 24
Q ss_pred cceEEEEecCceEEEEEcCCeEEEEecCCCCceeecCC-CCCcccccccCCCCceEEEEeCCCeEEEEecceEEE-EcCC
Q psy3725 556 LAQCIHIFSEGRLCVGYQSGFSIYKFSQDNRPIPLIHQ-DNPLVSLLTYSPVDALLAIELPRGEFLLVFHSLAAY-VDSQ 633 (760)
Q Consensus 556 ~~~sl~~~~~~~LcVG~~~gF~ivdl~~~~~~~~Ll~~-~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~~~gvf-VD~~ 633 (760)
.+.+|..-++|.|-||+..|...++.. +... .+... ....+ ......++++-.++.+.+.-+. |+| .|..
T Consensus 499 ~i~~i~~d~~g~lWigt~~Gl~~~~~~-~~~~-~~~~~~~~~~l-----~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~ 570 (795)
T 4a2l_A 499 QITTLFRDSHKRLWIGGEEGLSVFKQE-GLDI-QKASILPVSNV-----TKLFTNCIYEASNGIIWVGTRE-GFYCFNEK 570 (795)
T ss_dssp CEEEEEECTTCCEEEEESSCEEEEEEE-TTEE-EECCCSCSCGG-----GGSCEEEEEECTTSCEEEEESS-CEEEEETT
T ss_pred eEEEEEECCCCCEEEEeCCceEEEeCC-CCeE-EEecCCCCCCC-----CCCeeEEEEECCCCCEEEEeCC-CceeECCC
Confidence 567777777789999999999999986 2222 22110 11111 0112235666567778877776 766 4544
Q ss_pred CCcccccceecCCCCc----EEEee-CCeEEEEeCCeeEEEECcCCcEEEEEe------cCCc----eecCCCCCEEEEe
Q psy3725 634 GHKSREKEIMYPALPT----GASYM-DGQLLIFSETHVDVFNAESGDWLQTVN------IRRA----LPLDTRGSLCFSL 698 (760)
Q Consensus 634 G~rsR~~~I~W~~~P~----~~ay~-~PYLlvf~~~~IEVr~i~tg~lVQtI~------~~~i----r~L~s~G~l~l~s 698 (760)
+...+.... -.+.|. +++.. .-.|.+-+.++|-.++..++.+ +.+. ...+ -....+|.|++++
T Consensus 571 ~~~~~~~~~-~~gl~~~~i~~i~~d~~g~lWi~t~~Gl~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~ 648 (795)
T 4a2l_A 571 DKQIKRYNT-TNGLPNNVVYGILEDSFGRLWLSTNRGISCFNPETEKF-RNFTESDGLQSNQFNTASYCRTSVGQMYFGG 648 (795)
T ss_dssp TTEEEEECG-GGTCSCSCEEEEEECTTSCEEEEETTEEEEEETTTTEE-EEECGGGTCSCSCEEEEEEEECTTSCEEEEE
T ss_pred CCcEEEeCC-CCCCchhheEEEEECCCCCEEEEcCCceEEEcCCCCcE-EEcCCcCCCccccCccCceeECCCCeEEEec
Confidence 433322111 022332 23333 3478888899999999887764 3432 1222 1234689999987
Q ss_pred c
Q psy3725 699 A 699 (760)
Q Consensus 699 ~ 699 (760)
.
T Consensus 649 ~ 649 (795)
T 4a2l_A 649 I 649 (795)
T ss_dssp T
T ss_pred C
Confidence 4
No 345
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=39.13 E-value=4.5e+02 Score=29.36 Aligned_cols=80 Identities=15% Similarity=0.272 Sum_probs=53.8
Q ss_pred ceEEEEeeeeCCCc-cceEEEEEEecCCceEEEEEEecCC----cccceeeeeEecCCc-----ceEEEEecC-ceEEEE
Q psy3725 503 GCLSFTTGPLTHTR-TQHCLALAVKRQNSSQIILYEITRT----KTRHKRLHEVILPTL-----AQCIHIFSE-GRLCVG 571 (760)
Q Consensus 503 gc~~f~~g~~~~~~-~~~~LcVAvKr~~~~~Vl~ye~~~~----k~~fkk~kE~~lP~~-----~~sl~~~~~-~~LcVG 571 (760)
+|-.|+.-+..+.. .+..+|.|.|.++-.++.+-|++.. ...-++..|+..|.+ |-+|++... |-|.|-
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi 276 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence 45556655565533 2358999998766678888888543 122366778777664 556888753 578888
Q ss_pred EcCCe-EEEEec
Q psy3725 572 YQSGF-SIYKFS 582 (760)
Q Consensus 572 ~~~gF-~ivdl~ 582 (760)
++-|| ++||++
T Consensus 277 TK~G~i~lyDle 288 (494)
T 1bpo_A 277 TKYGYIHLYDLE 288 (494)
T ss_dssp ETTSEEEEEETT
T ss_pred ecCceEEEEecc
Confidence 88885 678886
No 346
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=38.80 E-value=3.5e+02 Score=27.93 Aligned_cols=206 Identities=11% Similarity=0.141 Sum_probs=105.6
Q ss_pred CeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEE
Q psy3725 457 KIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIIL 535 (760)
Q Consensus 457 ~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ 535 (760)
.|..+..-++.+.|+. ++.++.|+++++..-.. ...+.. ...+. ++.....+. +|+.+-. .-+|.+
T Consensus 125 ~v~~v~~s~dg~~l~s-~~~d~~i~iwd~~~~~~----~~~~~~h~~~v~--~~~~~p~~~---~l~s~s~---d~~v~i 191 (393)
T 1erj_A 125 YIRSVCFSPDGKFLAT-GAEDRLIRIWDIENRKI----VMILQGHEQDIY--SLDYFPSGD---KLVSGSG---DRTVRI 191 (393)
T ss_dssp BEEEEEECTTSSEEEE-EETTSCEEEEETTTTEE----EEEECCCSSCEE--EEEECTTSS---EEEEEET---TSEEEE
T ss_pred eEEEEEECCCCCEEEE-EcCCCeEEEEECCCCcE----EEEEccCCCCEE--EEEEcCCCC---EEEEecC---CCcEEE
Confidence 3888999888777665 44578999999853210 112221 11222 222222333 4444432 237889
Q ss_pred EEecCCcccceeeeeEecCCcceEEEEec-Cc-eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEE
Q psy3725 536 YEITRTKTRHKRLHEVILPTLAQCIHIFS-EG-RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAI 612 (760)
Q Consensus 536 ye~~~~k~~fkk~kE~~lP~~~~sl~~~~-~~-~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~ 612 (760)
|.+..++ ....+.....+.++.|.. ++ .|+.|...| ..++|+. ++.....+...... ..+...++..+
T Consensus 192 wd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~-~~~~~~~~~~~~~~----~~~h~~~v~~v 262 (393)
T 1erj_A 192 WDLRTGQ----CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENES----GTGHKDSVYSV 262 (393)
T ss_dssp EETTTTE----EEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT-TCCEEEEEC----------CCCSSCEEEE
T ss_pred EECCCCe----eEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC-CCcEEEeecccccC----CCCCCCCEEEE
Confidence 9875433 234566778888999986 44 566677554 6778886 33333222211100 01123344333
Q ss_pred Ee-CCCeEEEEe--cceEEEEcCCC-Ccc--------cccceecCCC---CcEEEee--CCeEEEEeC-CeeEEEECcCC
Q psy3725 613 EL-PRGEFLLVF--HSLAAYVDSQG-HKS--------REKEIMYPAL---PTGASYM--DGQLLIFSE-THVDVFNAESG 674 (760)
Q Consensus 613 ~l-~~~EfLLcy--~~~gvfVD~~G-~rs--------R~~~I~W~~~---P~~~ay~--~PYLlvf~~-~~IEVr~i~tg 674 (760)
.. .++.+|++- |..-..-|... ... ......|.+. -.++++. ..||+.-+. ..|-|+++.+|
T Consensus 263 ~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 33 344555433 22222223211 100 0011223222 2344553 357777664 56999999999
Q ss_pred cEEEEEecCC
Q psy3725 675 DWLQTVNIRR 684 (760)
Q Consensus 675 ~lVQtI~~~~ 684 (760)
..++++.+..
T Consensus 343 ~~~~~l~~h~ 352 (393)
T 1erj_A 343 NPLLMLQGHR 352 (393)
T ss_dssp CEEEEEECCS
T ss_pred eEEEEECCCC
Confidence 9999986544
No 347
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=38.69 E-value=32 Score=28.17 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=12.5
Q ss_pred HHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 115 RLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 115 e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
+.+.++|..+++.++.++.+|+..++
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555543333
No 348
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=38.30 E-value=2.8e+02 Score=26.64 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=30.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhH----HHHHHHHhhhc
Q psy3725 91 TQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKD----SQLKELQSRLE 140 (760)
Q Consensus 91 q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~----~e~~~l~~~~~ 140 (760)
+.+.+||.++|...-.++.+.+.+-.++..|..|...+. -+++.+|.+.+
T Consensus 100 ~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e 153 (168)
T 3o0z_A 100 TSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 445667777766666666666666666666666655555 44555554444
No 349
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=38.21 E-value=2e+02 Score=25.02 Aligned_cols=41 Identities=5% Similarity=0.071 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 96 ELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 96 eL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
++......+...|.++....++++-|..|+++....+.+.+
T Consensus 31 ~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~ 71 (101)
T 3u1c_A 31 DKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSE 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666666666666666666666665544
No 350
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.02 E-value=38 Score=34.64 Aligned_cols=40 Identities=5% Similarity=0.079 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 97 LSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 97 L~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+...+.++..++.+....+...+++..|+++|+.|++.++
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444455555555556666667777777777777665
No 351
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=36.99 E-value=62 Score=35.49 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=13.9
Q ss_pred HhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3725 76 LLNLQSSLNSEIQAKTQISEELSKTRSELIAA 107 (760)
Q Consensus 76 ~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~ 107 (760)
+.+|+.+|+...+-++.+.++..+.++++..+
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~ 36 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETC 36 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443333333
No 352
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=36.66 E-value=3.4e+02 Score=27.24 Aligned_cols=241 Identities=10% Similarity=0.101 Sum_probs=113.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEC---CCCeEEEEECCCccCCCcce-eecC-cccceEEEEeeeeCCCccceEEEEEEecC
Q psy3725 454 DTKKIYQMDYIPEEQLLVVLAG---KQRYVRLVPVRALDGDEVEW-VKIP-ETKGCLSFTTGPLTHTRTQHCLALAVKRQ 528 (760)
Q Consensus 454 ~~k~V~QI~Vi~e~~lLlvLsg---k~r~L~l~~L~~L~~~~~~~-~kl~-etKgc~~f~~g~~~~~~~~~~LcVAvKr~ 528 (760)
....+..|.+-++-+.|++.+. ....|.+|.++.-.+ .... ..+. .......++. .+. +|+++-..
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-~~~~~~~~~~~~~~p~~~~~----dg~---~l~~~~~~- 118 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-TLHLLNTQKTMGADPCYLTT----NGK---NIVTANYS- 118 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-EEEEEEEEECSSSCEEEEEE----CSS---EEEEEETT-
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-cEEEeeEeccCCCCcEEEEE----CCC---EEEEEECC-
Confidence 4456777888888888877776 236888887743211 1111 1111 1122333333 334 56666532
Q ss_pred CceEEEEEEecCCcccceeeee-Eec-----------CCcceEEEEecCce-EEEEEc--CCeEEEEecCCCC------c
Q psy3725 529 NSSQIILYEITRTKTRHKRLHE-VIL-----------PTLAQCIHIFSEGR-LCVGYQ--SGFSIYKFSQDNR------P 587 (760)
Q Consensus 529 ~~~~Vl~ye~~~~k~~fkk~kE-~~l-----------P~~~~sl~~~~~~~-LcVG~~--~gF~ivdl~~~~~------~ 587 (760)
.-.|.+|.+..... ...... +.. ...+.++.|.++|+ |.|... ....+++++.... .
T Consensus 119 -~~~v~~~~~~~~g~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l 196 (361)
T 3scy_A 119 -GGSITVFPIGQDGA-LLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKF 196 (361)
T ss_dssp -TTEEEEEEBCTTSC-BCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCC
T ss_pred -CCEEEEEEeCCCCc-CcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccce
Confidence 33677888753221 111111 111 11246799998885 666553 2367778763221 1
Q ss_pred eeecCCCCCcccccccCCCCceEEEEeCCCeEEEEec----ceEEEEcC-CCCcccccceecC----CCCcEEEeeC--C
Q psy3725 588 IPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVFH----SLAAYVDS-QGHKSREKEIMYP----ALPTGASYMD--G 656 (760)
Q Consensus 588 ~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~----~~gvfVD~-~G~rsR~~~I~W~----~~P~~~ay~~--P 656 (760)
...-. . ..+.......|..+.--+++.+|.+-+ ...+| |. .|.......+... ..|..+++.. -
T Consensus 197 ~~~~~---~-~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~-~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~ 271 (361)
T 3scy_A 197 LTKGT---P-EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAF-RYADGMLDEIQTVAADTVNAQGSGDIHLSPDGK 271 (361)
T ss_dssp EEEEE---E-EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEE-EEETTEEEEEEEEESCSSCCCCEEEEEECTTSS
T ss_pred eeccc---c-cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEE-EecCCceEEeEEEecCCCCCCCcccEEECCCCC
Confidence 00000 0 000001122333322223455543322 12222 22 3432221222211 2355777754 3
Q ss_pred eEEEEeC---CeeEEEECc--CCc--EEEEEec-CCcee--cCCCCC-EEEEecCCccEEEEeec
Q psy3725 657 QLLIFSE---THVDVFNAE--SGD--WLQTVNI-RRALP--LDTRGS-LCFSLANDIPYVVYLAN 710 (760)
Q Consensus 657 YLlvf~~---~~IEVr~i~--tg~--lVQtI~~-~~ir~--L~s~G~-l~l~s~~~~~~~~~~~~ 710 (760)
||++... +.|.|+++. +|. .++.++. ..++- +..+|. |+++....-.+.+|.-+
T Consensus 272 ~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 272 YLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 8877653 579999985 676 5555653 22332 345676 66665444455555444
No 353
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=36.38 E-value=1.5e+02 Score=26.21 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=32.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 88 QAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 88 ~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+.|..+..++.+++ ...+.|+++--.+...|+.||+..+.++..++
T Consensus 29 ~~k~eL~~~~~~~~---~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq 74 (107)
T 2no2_A 29 REKKELEDSLERIS---DQGQRKTQEQLEVLESLKQELATSQRELQVLQ 74 (107)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665 55567777777788888888888777776655
No 354
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=36.07 E-value=36 Score=22.04 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=6.8
Q ss_pred HHHHHHhhhHHHHHHHH
Q psy3725 120 SVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 120 ~l~~e~~~l~~e~~~l~ 136 (760)
||..|+|.|.+.+..++
T Consensus 5 elykeledlqerlrklr 21 (27)
T 3twe_A 5 ELYKELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444333333
No 355
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=35.90 E-value=1.5e+02 Score=22.90 Aligned_cols=29 Identities=10% Similarity=0.113 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 107 AQKEICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 107 ~e~~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
...+++++..+...+..+++..+.++.++
T Consensus 24 ~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 24 KTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554443
No 356
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=35.74 E-value=42 Score=23.70 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 106 AAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 106 ~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
++|-|+.+.=.++.+|..|+++|++-+
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 356777777788888888888887654
No 357
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=35.35 E-value=2.2e+02 Score=25.76 Aligned_cols=36 Identities=11% Similarity=0.293 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHH
Q psy3725 93 ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQ 131 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e 131 (760)
+.-||.+++ +..+.-+.+.+.++.+|..|++.-+.+
T Consensus 27 lk~ele~l~---~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 27 LKAQLENMK---TESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443 333445666666777777777665544
No 358
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=35.05 E-value=3.9e+02 Score=27.41 Aligned_cols=136 Identities=14% Similarity=0.158 Sum_probs=83.0
Q ss_pred eeeEecCCcc--eEEEEecCceEEEEEcCC--eEEEEecCCCCce-eecCCCCCcccccccCCCCceEEEEeCCCeEEEE
Q psy3725 548 LHEVILPTLA--QCIHIFSEGRLCVGYQSG--FSIYKFSQDNRPI-PLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLV 622 (760)
Q Consensus 548 ~kE~~lP~~~--~sl~~~~~~~LcVG~~~g--F~ivdl~~~~~~~-~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLc 622 (760)
++++..+..+ +.|.|.++ .|.++.... ...+|+. +++.. .++++ ...+.++...++.=|.+.
T Consensus 46 v~~~phd~~~ftqGL~~~~~-~Ly~stG~~g~v~~iD~~-Tgkv~~~~l~~-----------~~FgeGit~~g~~Ly~lt 112 (268)
T 3nok_A 46 IREYPHATNAFTQGLVFHQG-HFFESTGHQGTLRQLSLE-SAQPVWMERLG-----------NIFAEGLASDGERLYQLT 112 (268)
T ss_dssp EEEEECCTTCCEEEEEEETT-EEEEEETTTTEEEECCSS-CSSCSEEEECT-----------TCCEEEEEECSSCEEEEE
T ss_pred EEEEcCCCccccceEEEECC-EEEEEcCCCCEEEEEECC-CCcEEeEECCC-----------CcceeEEEEeCCEEEEEE
Confidence 4455554444 56777755 888887642 4566665 44433 22221 122333444433334444
Q ss_pred e-cceEEEEcC-CCCcccccceecCCCCcEEEeeCCeEEEEe-CCeeEEEECcCCcEEEEEecC-Ccee---cC----CC
Q psy3725 623 F-HSLAAYVDS-QGHKSREKEIMYPALPTGASYMDGQLLIFS-ETHVDVFNAESGDWLQTVNIR-RALP---LD----TR 691 (760)
Q Consensus 623 y-~~~gvfVD~-~G~rsR~~~I~W~~~P~~~ay~~PYLlvf~-~~~IEVr~i~tg~lVQtI~~~-~ir~---L~----s~ 691 (760)
. ++.++.+|. .++..+ .|..+..+.++++..-.|++.+ .+.|-+++..|.+.+.+|... +-++ ++ .+
T Consensus 113 w~~~~v~V~D~~Tl~~~~--ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~d 190 (268)
T 3nok_A 113 WTEGLLFTWSGMPPQRER--TTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECAN 190 (268)
T ss_dssp SSSCEEEEEETTTTEEEE--EEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET
T ss_pred ccCCEEEEEECCcCcEEE--EEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeC
Confidence 3 555666785 344443 4667777888888888888887 778999999999999998542 2222 22 38
Q ss_pred CCEEEEe
Q psy3725 692 GSLCFSL 698 (760)
Q Consensus 692 G~l~l~s 698 (760)
|.||+..
T Consensus 191 G~lyanv 197 (268)
T 3nok_A 191 GVIYANI 197 (268)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 8888654
No 359
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide pyrophosphohydrolase, structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.46A {Sulfolobus solfataricus} SCOP: a.204.1.2
Probab=34.85 E-value=1.3e+02 Score=26.04 Aligned_cols=36 Identities=14% Similarity=0.018 Sum_probs=28.3
Q ss_pred hhhhhhhhccchhHHHHH---HHHHHHHHHHHHHHHHhc
Q psy3725 6 SKAGQEFRVSDEKDARSY---LQALTTKTTQELEYLKHA 41 (760)
Q Consensus 6 ~~~~i~qwv~dek~ar~y---lq~la~k~~~ele~lr~~ 41 (760)
++.+|.+|+++--=-++. .+.+..|++||+.-|+..
T Consensus 16 ~l~~lq~~a~~~gfdw~~~~~~~~~~~kl~EE~gEl~ea 54 (95)
T 1vmg_A 16 ELKELQSKMKEMYFEKDSQRGIYATFTWLVEEVGELAEA 54 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 578899999876555554 678888999999888865
No 360
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=34.73 E-value=2.8e+02 Score=26.23 Aligned_cols=31 Identities=6% Similarity=0.207 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 106 AAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 106 ~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
.+..+|++++.|.+.-.+.+.+|.++++.+.
T Consensus 81 ~L~~kLKEAE~RAE~AERsv~kLEk~id~lE 111 (155)
T 2efr_A 81 VLSDKLKEAETRAEFAERSVTKLEKSIDDLE 111 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666665555555555555555543
No 361
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=34.00 E-value=1.9e+02 Score=26.03 Aligned_cols=29 Identities=0% Similarity=0.253 Sum_probs=16.4
Q ss_pred HHHHHHHHHhHHHHHHHH----hhhHHHHHHHH
Q psy3725 108 QKEICDFRLKMESVSMDL----RRKDSQLKELQ 136 (760)
Q Consensus 108 e~~l~e~e~~~~~l~~e~----~~l~~e~~~l~ 136 (760)
|+++.+.+.+.+.+..|+ .+++++++.++
T Consensus 67 e~E~ae~k~KYD~~lqe~ese~~~kkK~le~~~ 99 (115)
T 3vem_A 67 ERKMAEVQAEFRRKFHEVEAEHNTRTTKIEKDK 99 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444 46677777654
No 362
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=33.98 E-value=66 Score=22.66 Aligned_cols=27 Identities=4% Similarity=0.016 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 106 AAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 106 ~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
++|-|+.|.=.++.+|..|+++|++-+
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 356777777788888888888887665
No 363
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=33.69 E-value=3.3e+02 Score=26.23 Aligned_cols=139 Identities=14% Similarity=0.202 Sum_probs=0.0
Q ss_pred ceEEEE-ecCceEEEEE---cCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEEE--ecceEEEE
Q psy3725 557 AQCIHI-FSEGRLCVGY---QSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLV--FHSLAAYV 630 (760)
Q Consensus 557 ~~sl~~-~~~~~LcVG~---~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLc--y~~~gvfV 630 (760)
|..|++ -.++.|.|+. .....+++. ++.....+. ......|.++.--.++.++++ .+..-..+
T Consensus 79 p~~i~~~~~~g~l~v~~~~~~~~i~~~d~--~g~~~~~~~---------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 147 (286)
T 1q7f_A 79 PNRVAVVRNSGDIIVTERSPTHQIQIYNQ--YGQFVRKFG---------ATILQHPRGVTVDNKGRIIVVECKVMRVIIF 147 (286)
T ss_dssp EEEEEEETTTTEEEEEECGGGCEEEEECT--TSCEEEEEC---------TTTCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred ceEEEEEcCCCeEEEEcCCCCCEEEEECC--CCcEEEEec---------CccCCCceEEEEeCCCCEEEEECCCCEEEEE
Q ss_pred cCCCCcccccce-ecCCCCcEEEeeCC-eEEEEe--CCeeEEEECcCCcEEEEE------ecCCceecCCCCCEEEEecC
Q psy3725 631 DSQGHKSREKEI-MYPALPTGASYMDG-QLLIFS--ETHVDVFNAESGDWLQTV------NIRRALPLDTRGSLCFSLAN 700 (760)
Q Consensus 631 D~~G~rsR~~~I-~W~~~P~~~ay~~P-YLlvf~--~~~IEVr~i~tg~lVQtI------~~~~ir~L~s~G~l~l~s~~ 700 (760)
|..|+..+.... .--..|.++++..- .|++.. .+.|.+++. +|..+.++ ..+.--.+..+|.|+++...
T Consensus 148 ~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 148 DQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNH 226 (286)
T ss_dssp CTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECS
T ss_pred cCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCC
Q ss_pred Cc-cEEEE
Q psy3725 701 DI-PYVVY 707 (760)
Q Consensus 701 ~~-~~~~~ 707 (760)
.- ++.+|
T Consensus 227 ~~~~i~~~ 234 (286)
T 1q7f_A 227 NNFNLTIF 234 (286)
T ss_dssp SSCEEEEE
T ss_pred CCEEEEEE
No 364
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=33.62 E-value=1.5e+02 Score=22.93 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 107 AQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 107 ~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
++.++..+-+||..|..-+..-+.|++.|+
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555544444
No 365
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=33.36 E-value=60 Score=27.07 Aligned_cols=38 Identities=32% Similarity=0.560 Sum_probs=23.8
Q ss_pred CcccCCCcccccccccCeeeecCCCcccccccccccCCCCCC
Q psy3725 221 PTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPV 262 (760)
Q Consensus 221 pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~ 262 (760)
+..|..|..- +|+. |+.|. |+...-..-.-.-...|+.
T Consensus 25 ~nRC~~CrKk-vgL~--gf~Cr-Cg~~FCs~HRy~e~H~C~f 62 (74)
T 1wfl_A 25 KNRCFMCRKK-VGLT--GFDCR-CGNLFCGLHRYSDKHNCPY 62 (74)
T ss_dssp TTBCSSSCCB-CGGG--CEECT-TSCEECSSSCSTTTTTCCC
T ss_pred CCcChhhCCc-cccc--CeecC-CCCEechhcCCCccCCCcc
Confidence 4689999985 4654 79999 9966532222333445644
No 366
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=33.34 E-value=21 Score=38.00 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 93 ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
|-|||.+.-+..++.+.+++..+..++++..+|+.|+.++.+++.
T Consensus 2 ~~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~ 46 (319)
T 1fzc_C 2 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 46 (319)
T ss_dssp --------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788777777888888888888888888888888888777664
No 367
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=32.98 E-value=2.4e+02 Score=24.38 Aligned_cols=28 Identities=7% Similarity=0.159 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 105 IAAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 105 ~~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
...|.++....++++.|..+++.....+
T Consensus 40 ~~~E~ei~sL~kKiq~lE~eld~~~e~l 67 (101)
T 3u59_A 40 KQLEEEQQGLQKKLKGTEDEVEKYSESV 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333
No 368
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=32.94 E-value=1.2e+02 Score=25.63 Aligned_cols=41 Identities=5% Similarity=0.168 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 94 SEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 94 ~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
+.-|......|-.+|.+++.++.+.++=+.+=++++.|++.
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 52 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGR 52 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555444443
No 369
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=32.93 E-value=1.2e+02 Score=29.83 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=49.8
Q ss_pred EEEEeCcE-EEEE-ecCCCCCCCCcc-ceeEEeecCCCCeEEEeeccCcccccC----CC-ccceeeeeecccCCCCCCc
Q psy3725 303 FVVVCDFK-LFLY-DISPDRNALPAV-YVSLVLDMRDEDFAVSGVRESDVIHAT----KK-DIPCIFRITTSLMDPPGTK 374 (760)
Q Consensus 303 ~~~l~~~k-L~~y-d~~~~~~~~p~~-~~~~~ldl~d~~fsV~~V~~sdvi~a~----~~-dip~if~it~s~l~~~~~~ 374 (760)
|+.|+-++ .+.| |..+.....|+. .....||+.+=.=.++++....+.... ++ -+++-|.|.. .++
T Consensus 52 f~rLs~n~k~L~y~d~~~~~~~~p~ld~l~~kI~ls~Is~V~sg~~~p~~~~~~~~k~~~~~~~laFSii~----~~~-- 125 (203)
T 3a98_B 52 YCRLSPNHKVLHYGDLEESPQGEVPHDSLQDKLPVADIKAVVTGKDCPHMKEKGALKQNKEVLELAFSILY----DSN-- 125 (203)
T ss_dssp EEEECTTSSEEEEEECCBCSSCBCCBCCSCCEEEGGGEEEEEEGGGSTTC--------CCTTGGGEEEEEE----TTT--
T ss_pred EEEECCCCceEEEccccccccCCCChhhcccceeHhhhhHhhcCCCCccccccccccccCcccceEEEEec----CCC--
Confidence 99998654 4444 544422222322 123457775422122334433322211 12 2457777742 333
Q ss_pred ceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 375 NHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 375 ~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
.+|-|+|+|..+..-|++-|.-+.
T Consensus 126 ~~L~fvA~s~~~~~~W~DGL~~Ll 149 (203)
T 3a98_B 126 CQLNFIAPDKHEYCIWTDGLNALL 149 (203)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHT
T ss_pred ceEEEecCCHHHHHHHHHHHHHHh
Confidence 689999999999999999887764
No 370
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=32.24 E-value=1.3e+02 Score=25.73 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=18.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhHHHHHH
Q psy3725 72 EKMELLNLQSSLNSEIQAKTQISEELSK 99 (760)
Q Consensus 72 ~~~~~l~lqsal~~Ei~akq~i~eeL~k 99 (760)
|..+.+..|.||.+ |+..+||||+.
T Consensus 38 dPd~vv~RQEAl~a---aRlRMQEeldA 62 (89)
T 2q2f_A 38 EPDVVVKRQEALAA---ARLKMQEELNA 62 (89)
T ss_dssp SHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 44567778888864 77888888873
No 371
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=32.12 E-value=2.4e+02 Score=26.54 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=31.5
Q ss_pred HHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 75 ELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 75 ~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
-+-+..+.|.+|+..+..+.+=|.... ..-+..+.++++..++-+.-+++.
T Consensus 83 ~L~eYn~rL~~E~~dR~~L~~~L~~~~---~~~~~~l~e~e~~leeyK~Kl~rv 133 (152)
T 4fla_A 83 LLAEYNGRLAAELEDRRQLARMLVEYT---QNQKDVLSEKEKKLEEYKQKLARV 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788999999999999876665433 333344555555554444433333
No 372
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.11 E-value=1.7e+02 Score=25.56 Aligned_cols=34 Identities=6% Similarity=0.178 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
.|+.+.+.++.....+-.++|++...+..|+|.|
T Consensus 26 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 26 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333444444333
No 373
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=32.05 E-value=2.2e+02 Score=23.93 Aligned_cols=51 Identities=16% Similarity=0.305 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhh----HHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHhhhHHH
Q psy3725 81 SSLNSEIQAKTQI----SEELSKTR-----SELIAAQKEICDFRLKMESVSMDLRRKDSQ 131 (760)
Q Consensus 81 sal~~Ei~akq~i----~eeL~k~~-----~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e 131 (760)
.+|+.||+-||.+ .+||...+ +....+++.|..+.+-+.+|+..+.-+-.|
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~g~E 84 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVLRNE 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4677788888764 46665544 334556777888888888888887777655
No 374
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=31.96 E-value=2.5e+02 Score=24.21 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhc
Q psy3725 18 KDARSYLQALTTKTTQELEYLKHA 41 (760)
Q Consensus 18 k~ar~ylq~la~k~~~ele~lr~~ 41 (760)
.+-..||+.+|..+-+.+..+|..
T Consensus 22 ~~~ee~l~~aA~~vd~~~~~i~~~ 45 (104)
T 1t3u_A 22 DDERANLESAARYLDGKMREIRSS 45 (104)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999976
No 375
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=31.83 E-value=78 Score=28.18 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy3725 94 SEELSKTRSELIAAQKEICDFRLKMESVS 122 (760)
Q Consensus 94 ~eeL~k~~~~~~~~e~~l~e~e~~~~~l~ 122 (760)
+.||.+.++....+.+++.+.+...+.|.
T Consensus 10 ~~eL~~~~~ei~~L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 10 QAELTKSQETIGSLNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433333344444443333333
No 376
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.59 E-value=2e+02 Score=22.91 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=31.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 87 IQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 87 i~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
.|.+|.=.++........-.++.+-.+.+.++..|..|+..|+..+.|
T Consensus 15 ~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 15 TRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444555555555666777777778888888888888777654
No 377
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=31.52 E-value=1.9e+02 Score=24.45 Aligned_cols=57 Identities=11% Similarity=0.204 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 78 NLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 78 ~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
+|+..++.-..-|..+.-|+..++.+.-.+..|..+--....++..++..|++.+.+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 456666666666666666666666666555555555445555555555555555544
No 378
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=31.34 E-value=81 Score=23.52 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q psy3725 100 TRSELIAAQKEICDFRLKMESVSMDLRR 127 (760)
Q Consensus 100 ~~~~~~~~e~~l~e~e~~~~~l~~e~~~ 127 (760)
+.+....+|+++-..|.|.++|.+.++.
T Consensus 14 l~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 14 LNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344445666666666666666665544
No 379
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=31.04 E-value=77 Score=22.47 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 100 TRSELIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 100 ~~~~~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
+|..|.+-++...|.+++|.-|.+|+-.|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 34555666677777777777777666544
No 380
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.87 E-value=2.2e+02 Score=24.89 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHhhHHHHHH
Q psy3725 79 LQSSLNSEIQAKTQISEELSK 99 (760)
Q Consensus 79 lqsal~~Ei~akq~i~eeL~k 99 (760)
|+..|..|-..|..+..+.++
T Consensus 31 L~~~l~eE~~~R~~aE~~~~~ 51 (97)
T 2eqb_B 31 LREDIAKENELRTKAEEEADK 51 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443333333
No 381
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=30.54 E-value=3.2e+02 Score=25.31 Aligned_cols=99 Identities=13% Similarity=0.236 Sum_probs=53.1
Q ss_pred ceeeeeeccc--cc----ccccceEEEEEEEeCc------EEEEEecCCCCCCCCccceeEEeecCCCCeEEEeeccCcc
Q psy3725 282 AYEGYVKVPK--TG----GVKKGWVRQFVVVCDF------KLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDV 349 (760)
Q Consensus 282 ~~eG~vkvp~--~~----~~kkgw~r~~~~l~~~------kL~~yd~~~~~~~~p~~~~~~~ldl~d~~fsV~~V~~sdv 349 (760)
.-||.|+... +. +....|++.+.+|+.. -|=+|+ +.+..+|-. -|++ ....-|+..++-+.
T Consensus 19 ~kEG~l~~~~~~~~~~~~~~~~~W~k~RLvL~k~g~G~~y~LEfy~--PPkssKpK~----~i~c-s~I~EVR~tt~LEm 91 (136)
T 1v5m_A 19 QREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFV--PPKASRPKV----SIPL-SAIIEVRTTMPLEM 91 (136)
T ss_dssp CEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEES--STTSSSCSS----CEET-TTCCBCCCCCCSSS
T ss_pred eeeeeeeeecccccccccCcccchhheeeEEEEccCCCceEEEEec--CCcccCCcc----ccch-hhhhhhhhcccccc
Confidence 4567765332 11 2345799999988642 355663 334455532 2332 11122332232222
Q ss_pred cccCCCccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHH
Q psy3725 350 IHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELH 398 (760)
Q Consensus 350 i~a~~~dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~ 398 (760)
. |--.+|-|.+. .+..++|-|.++.+++.|+..|.+=.
T Consensus 92 P-----D~~nTFVlK~~------n~~eyi~ea~d~~q~~sWla~Ir~C~ 129 (136)
T 1v5m_A 92 P-----EKDNTFVLKVE------NGAEYILETIDSLQKHSWVADIQGCV 129 (136)
T ss_dssp C-----CCTTEECCBCT------TSCBEEEECSSHHHHHHHHHHHHHHH
T ss_pred C-----CccceEEEEec------CCcEEEEEcCCHHHHHHHHHHHHhhc
Confidence 2 22244444322 13478999999999999999886543
No 382
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=30.50 E-value=29 Score=38.26 Aligned_cols=24 Identities=17% Similarity=0.504 Sum_probs=11.0
Q ss_pred HHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 111 ICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 111 l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
+++.+++.++|..++..++.++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 77 VKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 383
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=30.38 E-value=5.3e+02 Score=27.53 Aligned_cols=129 Identities=12% Similarity=0.173 Sum_probs=72.9
Q ss_pred EEEEEc---C-----CCCCCceEEcCCCCCeeEEEEecCCC------eEEEEECCC---CeEEEEECCCccCCCcceeec
Q psy3725 436 LLVVLA---G-----KQRYVQIARVGDTKKIYQMDYIPEEQ------LLVVLAGKQ---RYVRLVPVRALDGDEVEWVKI 498 (760)
Q Consensus 436 llvGTe---~-----l~~~~~l~rv~~~k~V~QI~Vi~e~~------lLlvLsgk~---r~L~l~~L~~L~~~~~~~~kl 498 (760)
++|||+ | ++. +.+..+.. .++.-+++.+.+. -+++.++++ .+|++|.++-=.+ ....+
T Consensus 42 ~ii~t~k~~gL~Vydl~G-~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~---~l~~i 116 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLDG-KMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG---TLQSM 116 (355)
T ss_dssp EEEEEETTTEEEEEETTS-CEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC---CEEEC
T ss_pred EEEEEcCCCCEEEEcCCC-cEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC---ceeec
Confidence 799998 2 422 25555544 7899999998654 145556654 7899998841111 11111
Q ss_pred -----C--cc-cceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEec---CCcccceeeeeEecCCcceEEEEec-Cc
Q psy3725 499 -----P--ET-KGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEIT---RTKTRHKRLHEVILPTLAQCIHIFS-EG 566 (760)
Q Consensus 499 -----~--et-Kgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~---~~k~~fkk~kE~~lP~~~~sl~~~~-~~ 566 (760)
+ .. +...=+++.+-.... ..+++|.-| . -.+..|++. ..+...+..++|.+++.+-.+.+-. .+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g-~~yafV~~k-~--G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g 192 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTG-KYYAMVTGK-E--GEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYG 192 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTC-CEEEEEECS-S--SEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTT
T ss_pred cccccCcCCCCCCeeEEEEEecCCCC-cEEEEEECC-C--CeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCC
Confidence 1 11 222223333322111 124554433 2 367778773 2224568899999999987777763 24
Q ss_pred eEEEEEc
Q psy3725 567 RLCVGYQ 573 (760)
Q Consensus 567 ~LcVG~~ 573 (760)
+|.||-.
T Consensus 193 ~Lyv~eE 199 (355)
T 3amr_A 193 RLYIAEE 199 (355)
T ss_dssp EEEEEET
T ss_pred eEEEecc
Confidence 7777775
No 384
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=30.28 E-value=6.7e+02 Score=28.71 Aligned_cols=251 Identities=12% Similarity=0.042 Sum_probs=126.6
Q ss_pred CCeeEEEEecCCCeEEEEEc--CCC---CC-CceEEcC-----CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccC
Q psy3725 422 TKKIYQMDYIPKEQLLVVLA--GKQ---RY-VQIARVG-----DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDG 490 (760)
Q Consensus 422 ~~~i~Caa~~~~~rllvGTe--~l~---~~-~~l~rv~-----~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~ 490 (760)
...|.|.+.-.+++|.|||+ |+. .. ..+.++. ....|..|..-.+-++.+--. +.-|+.|+...
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~--~~Gl~~~~~~~--- 436 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTY--LGNISYYNTRL--- 436 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEET--TEEEEEECSSS---
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEec--cCCEEEEcCCC---
Confidence 34577776533568999996 442 11 1222221 224566666555555444321 23466555421
Q ss_pred CCcceeecCc--ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe---c-CCcceEEEEec
Q psy3725 491 DEVEWVKIPE--TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI---L-PTLAQCIHIFS 564 (760)
Q Consensus 491 ~~~~~~kl~e--tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~---l-P~~~~sl~~~~ 564 (760)
.....+.. ..+-..+++-....+ .|.++... -|++|.....+ |..+.... + ...+.+|..-+
T Consensus 437 --~~~~~~~~~~~~~~~v~~i~~d~~g----~lwigt~~----Gl~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~ 504 (781)
T 3v9f_A 437 --KKFQIIELEKNELLDVRVFYEDKNK----KIWIGTHA----GVFVIDLASKK--VIHHYDTSNSQLLENFVRSIAQDS 504 (781)
T ss_dssp --CEEEECCSTTTCCCCEEEEEECTTS----EEEEEETT----EEEEEESSSSS--CCEEECTTTSSCSCSCEEEEEECT
T ss_pred --CcEEEeccCCCCCCeEEEEEECCCC----CEEEEECC----ceEEEeCCCCe--EEecccCcccccccceeEEEEEcC
Confidence 11112211 111122333233333 36666643 68888754333 33332111 1 24577787777
Q ss_pred CceEEEEEc-CCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEEEecceEE-EE-cCCCCcccccc
Q psy3725 565 EGRLCVGYQ-SGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVFHSLAA-YV-DSQGHKSREKE 641 (760)
Q Consensus 565 ~~~LcVG~~-~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~~~gv-fV-D~~G~rsR~~~ 641 (760)
+|.|-||+. .|...++.. +.....+...+ .+ ......++++-.++.+.++-+ -|+ +. |..+...+...
T Consensus 505 ~g~lWigt~~~Gl~~~~~~-~~~~~~~~~~~--~l-----~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~ 575 (781)
T 3v9f_A 505 EGRFWIGTFGGGVGIYTPD-MQLVRKFNQYE--GF-----CSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQ 575 (781)
T ss_dssp TCCEEEEESSSCEEEECTT-CCEEEEECTTT--TC-----SCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEEC
T ss_pred CCCEEEEEcCCCEEEEeCC-CCeEEEccCCC--CC-----CCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEcc
Confidence 889999997 788888775 22333332211 11 111223566656777777766 566 54 54443322211
Q ss_pred eecCCCC----cEEEee-CCeEEEEeCCeeEEEECcCCcEEEEEe------cCCc----eecCCCCCEEEEecC
Q psy3725 642 IMYPALP----TGASYM-DGQLLIFSETHVDVFNAESGDWLQTVN------IRRA----LPLDTRGSLCFSLAN 700 (760)
Q Consensus 642 I~W~~~P----~~~ay~-~PYLlvf~~~~IEVr~i~tg~lVQtI~------~~~i----r~L~s~G~l~l~s~~ 700 (760)
.. .+.| .+++.. .-.|.+-+.++|-.++..++.+ +.+. .... -...++|.|++++.+
T Consensus 576 ~~-~gl~~~~i~~i~~d~~g~lW~~t~~Gl~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~ 647 (781)
T 3v9f_A 576 RK-EGLPNTHIRAISEDKNGNIWASTNTGISCYITSKKCF-YTYDHSNNIPQGSFISGCVTKDHNGLIYFGSIN 647 (781)
T ss_dssp GG-GTCSCCCCCEEEECSSSCEEEECSSCEEEEETTTTEE-EEECGGGTCCSSCEEEEEEEECTTSCEEEEETT
T ss_pred cc-CCCCCceEEEEEECCCCCEEEEcCCceEEEECCCCce-EEecccCCccccccccCceEECCCCEEEEECCC
Confidence 00 1222 344443 3478888888888888877654 3332 1111 223468999998753
No 385
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=30.27 E-value=1e+02 Score=33.63 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HhhhHHHHHHHH
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMD-------LRRKDSQLKELQ 136 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e-------~~~l~~e~~~l~ 136 (760)
+|+..++......+.++++++.+++++.++ -.+|-.++.|++
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444444444444444444444443 334444445544
No 386
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=30.20 E-value=1.6e+02 Score=29.68 Aligned_cols=58 Identities=12% Similarity=0.245 Sum_probs=43.8
Q ss_pred HHHhhhHHHHHHHHHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHhHHHHHHHHhhhHHH
Q psy3725 74 MELLNLQSSLNSEIQAKTQISEELSKTR------SELIAAQKEICDFRLKMESVSMDLRRKDSQ 131 (760)
Q Consensus 74 ~~~l~lqsal~~Ei~akq~i~eeL~k~~------~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e 131 (760)
....+-+.+++.=-+-|+.|++++.+++ ..+..+|++|..+|..+..-..++...+.+
T Consensus 97 K~IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 160 (234)
T 3plt_A 97 KSIRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNITRE 160 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHH
Confidence 3456667777777788899999999887 456778888888888877777777665544
No 387
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.20 E-value=41 Score=37.25 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 106 AAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 106 ~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
.+|.++++.+...+.|..|+.+.+.+++.+|
T Consensus 69 ~~e~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 99 (437)
T 4b4t_L 69 RYDDQLKQRRQNIRDLEKLYDKTENDIKALQ 99 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777777777778888877777777666
No 388
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=30.12 E-value=1.8e+02 Score=32.49 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=9.7
Q ss_pred hhhccchhHHHHHHHHHHHH
Q psy3725 11 EFRVSDEKDARSYLQALTTK 30 (760)
Q Consensus 11 ~qwv~dek~ar~ylq~la~k 30 (760)
|.|+.+++..-..-++|+.+
T Consensus 10 i~~~r~~~~~~~v~~~~~~R 29 (484)
T 3lss_A 10 IQLFRDETGANIIRESQRRR 29 (484)
T ss_dssp GGGGGSHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHhc
Confidence 45666665222333455544
No 389
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=30.12 E-value=1.6e+02 Score=21.53 Aligned_cols=15 Identities=0% Similarity=0.160 Sum_probs=8.2
Q ss_pred HHHHHHHhhhHHHHH
Q psy3725 119 ESVSMDLRRKDSQLK 133 (760)
Q Consensus 119 ~~l~~e~~~l~~e~~ 133 (760)
.-|..||..|++++|
T Consensus 34 aylekeianlrkkie 48 (49)
T 3he5_A 34 AYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 344555666666554
No 390
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=29.50 E-value=60 Score=35.70 Aligned_cols=23 Identities=17% Similarity=0.214 Sum_probs=10.4
Q ss_pred HHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 111 ICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 111 l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
+++.+++.++|..++..++.++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 73 GKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 391
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=29.49 E-value=1.2e+02 Score=29.93 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
|-|.+.|+.+.++-++-+|.++..++|..|+..|++.++-++
T Consensus 30 ~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 30 EALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 446677777788888999999999999999999999998776
No 392
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=29.35 E-value=4.2e+02 Score=26.08 Aligned_cols=163 Identities=16% Similarity=0.139 Sum_probs=83.3
Q ss_pred EEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEEEEcC------CeEEEEecCCCCceeecCCCCCcccccccCC
Q psy3725 532 QIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCVGYQS------GFSIYKFSQDNRPIPLIHQDNPLVSLLTYSP 605 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcVG~~~------gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~ 605 (760)
.|.+|....++ ++.+. ...+..+.+|.+..+|+|.|+... +..++|.. +.....++.... ..
T Consensus 67 ~i~~~d~~~~~--~~~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~--------~~ 134 (333)
T 2dg1_A 67 NIFKINPETKE--IKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN-GDNLQDIIEDLS--------TA 134 (333)
T ss_dssp EEEEECTTTCC--EEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT-SCSCEEEECSSS--------SC
T ss_pred EEEEEeCCCCc--EEEEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC-CCEEEEEEccCc--------cC
Confidence 67777654332 22221 123567889999988899888764 35556654 222222322110 11
Q ss_pred CCceEEEEeCCCeEEEEec-------ceEEE-EcCCCCcccccceecCCCCcEEEeeCC--eEEEEe--CCeeEEEECcC
Q psy3725 606 VDALLAIELPRGEFLLVFH-------SLAAY-VDSQGHKSREKEIMYPALPTGASYMDG--QLLIFS--ETHVDVFNAES 673 (760)
Q Consensus 606 ~~pl~i~~l~~~EfLLcy~-------~~gvf-VD~~G~rsR~~~I~W~~~P~~~ay~~P--YLlvf~--~~~IEVr~i~t 673 (760)
..|..+..-+++.++++-. .-++| +|..|...+.. ..=...|..+++... +|++.. .+.|-++++.+
T Consensus 135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 2333444334566666543 24555 56555332221 011124667777654 677665 46899998864
Q ss_pred -CcEEEEE------ecC---Cce--ecCCCCCEEEEecCCccEEEE
Q psy3725 674 -GDWLQTV------NIR---RAL--PLDTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 674 -g~lVQtI------~~~---~ir--~L~s~G~l~l~s~~~~~~~~~ 707 (760)
|..+..+ ... .+. .+..+|.++++....-.+.+|
T Consensus 214 ~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~ 259 (333)
T 2dg1_A 214 DGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVF 259 (333)
T ss_dssp TSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred CCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence 4443322 111 111 234688898887543334444
No 393
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.15 E-value=1.4e+02 Score=26.01 Aligned_cols=65 Identities=18% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH------------------------------------HHHh
Q psy3725 74 MELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICD------------------------------------FRLK 117 (760)
Q Consensus 74 ~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e------------------------------------~e~~ 117 (760)
|+ ++|..++..|..=+.++.++..+....-..+..+++ .+++
T Consensus 1 m~--~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~ 78 (117)
T 2zqm_A 1 MQ--NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEK 78 (117)
T ss_dssp CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHH
T ss_pred CC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 118 MESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 118 ~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
.+.+..+++.|.++++.++..+.
T Consensus 79 ~e~ie~~i~~le~~~~~l~~~l~ 101 (117)
T 2zqm_A 79 IETLEVRLNALERQEKKLNEKLK 101 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 394
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=28.81 E-value=2.7e+02 Score=23.60 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=44.1
Q ss_pred HHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHH-----------HHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 73 KMELLNLQSSLNSEIQAKTQISEELSKTRSELIA-----------AQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 73 ~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~-----------~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
..+.++=..+|++||.+++..-+.+++.=..++. .+.+|.+...+...|..........+++
T Consensus 38 v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~ 110 (118)
T 3uul_A 38 VKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHD 110 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677789999999999988888776555542 4456666777777777766666666654
No 395
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=28.61 E-value=3.8e+02 Score=25.33 Aligned_cols=142 Identities=10% Similarity=-0.020 Sum_probs=0.0
Q ss_pred ceEEEEecCceEEE-EEcCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEEEe-cceEEEEcCCC
Q psy3725 557 AQCIHIFSEGRLCV-GYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVF-HSLAAYVDSQG 634 (760)
Q Consensus 557 ~~sl~~~~~~~LcV-G~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy-~~~gvfVD~~G 634 (760)
|.+|.+-++|+|.| +...+-.++-++.......... ......|.++..-.++.++++- +..-..+|..|
T Consensus 26 p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~ 96 (270)
T 1rwi_B 26 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP---------FNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGS 96 (270)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECC-----EECC---------CCSCCSCCCEEECTTCCEEEEETTTEEEEECTTC
T ss_pred ccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe---------eCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCC
Q ss_pred CcccccceecCCCCcEEEeeCC---eEEEEeCCeeEEEECcCCcEEEEEecCCcee----cCCCCCEEEEecCCccEEEE
Q psy3725 635 HKSREKEIMYPALPTGASYMDG---QLLIFSETHVDVFNAESGDWLQTVNIRRALP----LDTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 635 ~rsR~~~I~W~~~P~~~ay~~P---YLlvf~~~~IEVr~i~tg~lVQtI~~~~ir~----L~s~G~l~l~s~~~~~~~~~ 707 (760)
.........=...|..+++... |+.....+.|-+++..+...........-.| +..+|.+|++....-.+..|
T Consensus 97 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 97 NNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL 176 (270)
T ss_dssp SCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred ceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEE
No 396
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=28.61 E-value=7.1e+02 Score=28.48 Aligned_cols=257 Identities=12% Similarity=0.134 Sum_probs=120.8
Q ss_pred CCeeEEEEecCCCeEEEEEc-CCCCC--CceEEcC-----------CCCCeeEEEEecCCCeEEEEECCCCeEEEEECCC
Q psy3725 422 TKKIYQMDYIPKEQLLVVLA-GKQRY--VQIARVG-----------DTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRA 487 (760)
Q Consensus 422 ~~~i~Caa~~~~~rllvGTe-~l~~~--~~l~rv~-----------~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~ 487 (760)
-+.|+|.+.-..+.|.|||+ ||.+- ..++... ....|..|..-.+-+.|-+-+. +.-|..|+...
T Consensus 18 ~n~V~~I~qD~~G~lWigT~~GL~ryDG~~f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~-~~Gl~~~d~~~ 96 (781)
T 3v9f_A 18 NNYVLSITQDKQGFLWFATEEGLNKFDGTRFITYYKEEQSSSVQSITGNELNEVYTDPVQPVIWIATQ-RAGLNAYNYET 96 (781)
T ss_dssp CSBEEEEEECTTSCEEEEESSCEEEECSSSEEEECCCSSCSSSCCCSCSCEEEEEECSSSSEEEEEES-SSCEEEEETTT
T ss_pred cCEeEEEEECCCCCEEEccCCcCccccCCceEEEEcCCCCCccccccccccceEEEcCCCCEEEEEeC-CCCcceECCCC
Confidence 56899988644667999999 65431 1333221 1124777665554441333443 22577777531
Q ss_pred --ccC---CCcceeecCcccceEEEEeeeeC--CCccceEEEEEE-ecCCceEEEEEEecCCcccceeeee--E-ecC-C
Q psy3725 488 --LDG---DEVEWVKIPETKGCLSFTTGPLT--HTRTQHCLALAV-KRQNSSQIILYEITRTKTRHKRLHE--V-ILP-T 555 (760)
Q Consensus 488 --L~~---~~~~~~kl~etKgc~~f~~g~~~--~~~~~~~LcVAv-Kr~~~~~Vl~ye~~~~k~~fkk~kE--~-~lP-~ 555 (760)
+.. .......++. .....+. ... ++ .|.|+. .. .|++|.....+ |+.+.. . .+| .
T Consensus 97 ~~f~~~~~~~~~~~~l~~-~~i~~i~--~d~~~~g----~lwi~t~~~----gl~~~~~~~~~--~~~~~~~~~~~l~~~ 163 (781)
T 3v9f_A 97 QSFSVYQYNPEDPQSLIT-NDVTHIT--SSVQAGK----GLWVCTYYR----GIEYLDIATGK--FTHYNKSTVPALPSE 163 (781)
T ss_dssp TEEEEECCCTTCSSSCSC-SCEEEEE--ECSSTTS----EEEEEESSS----CEEEEETTTTE--EEEESTTTCTTCSCC
T ss_pred CeEEeeccccCCCCCccc-CcceEEE--ecCccCC----CEEEEECCC----CeeEEECCCCe--EEeeccCcccCCCcc
Confidence 100 0000000110 1122221 222 22 356665 33 57777754332 222211 0 122 3
Q ss_pred cceEEEEecCceEEEEEcC-CeEEEEecCCCCceeecC-CCCCcccccccCCCCceEEEEeCCCeEEEEecceEEEE-cC
Q psy3725 556 LAQCIHIFSEGRLCVGYQS-GFSIYKFSQDNRPIPLIH-QDNPLVSLLTYSPVDALLAIELPRGEFLLVFHSLAAYV-DS 632 (760)
Q Consensus 556 ~~~sl~~~~~~~LcVG~~~-gF~ivdl~~~~~~~~Ll~-~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~~~gvfV-D~ 632 (760)
.+.+|..-.+|.|-||+.. |...++.. +.....+.+ +.++. .+ ......++++-.++.+.+.-+. |+|+ |.
T Consensus 164 ~i~~i~~d~~g~lwigt~~~Gl~~~~~~-~~~~~~~~~~~~~~~--~l--~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~ 237 (781)
T 3v9f_A 164 QTWTATEAEDGKLYIGHVEGGLSILSLN-DKSVKHFVHDPQNPN--SL--PGNDVRCIYKDTNGNIWIGTSK-GLALFNA 237 (781)
T ss_dssp CEEEEEEEETTEEEEEETTTEEEEEETT-TTEEEEECC------------CCSSEEEEEECTTCCEEEEETT-EEEEEET
T ss_pred ceEEEEECCCCCEEEEecCCCeEEEcCC-CCceEeeecCCCCcc--cC--CCCceeEEEEcCCCCEEEEeCC-cHheECC
Confidence 3566766667799999976 87778775 333333322 11110 00 0112335666567788888776 8764 65
Q ss_pred CCCcccccce------ecCCCC-cEEEee-CCeEEEEeC-CeeEEEECcCCcEEEEEe----------------cCCcee
Q psy3725 633 QGHKSREKEI------MYPALP-TGASYM-DGQLLIFSE-THVDVFNAESGDWLQTVN----------------IRRALP 687 (760)
Q Consensus 633 ~G~rsR~~~I------~W~~~P-~~~ay~-~PYLlvf~~-~~IEVr~i~tg~lVQtI~----------------~~~ir~ 687 (760)
.......... ..+... .++... .-.|.+-+. ++|-+.+..++.+.+... ...|+-
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~ 317 (781)
T 3v9f_A 238 NTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARY 317 (781)
T ss_dssp TTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEE
T ss_pred CCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEE
Confidence 4332221100 011111 122222 235555555 889999988876544322 223443
Q ss_pred c--CCCCCEEEEe
Q psy3725 688 L--DTRGSLCFSL 698 (760)
Q Consensus 688 L--~s~G~l~l~s 698 (760)
+ ..+|.|.+++
T Consensus 318 i~~D~~g~lWigt 330 (781)
T 3v9f_A 318 IFQDSFNNIWIGT 330 (781)
T ss_dssp EEECSSCCEEEEE
T ss_pred EEEeCCCCEEEEe
Confidence 3 4688888877
No 397
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=28.56 E-value=4.6e+02 Score=26.29 Aligned_cols=141 Identities=9% Similarity=0.062 Sum_probs=87.0
Q ss_pred ceeeeeEecCCc--ceEEEEecCceEEEEEcC----CeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCe
Q psy3725 545 HKRLHEVILPTL--AQCIHIFSEGRLCVGYQS----GFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGE 618 (760)
Q Consensus 545 fkk~kE~~lP~~--~~sl~~~~~~~LcVG~~~----gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~E 618 (760)
++.++|++.+.. .|.|.|.++ .|.++... .-..+|+. +++...-.... ....+.++...++.=
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~~-~LyestG~~g~S~v~~vD~~-tgkv~~~~~l~---------~~~fgeGi~~~~~~l 77 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLRG-HLYESTGETGRSSVRKVDLE-TGRILQRAEVP---------PPYFGAGIVAWRDRL 77 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEETT-EEEEEECCTTSCEEEEEETT-TCCEEEEEECC---------TTCCEEEEEEETTEE
T ss_pred eEEEEEcCCCCccccccEEEECC-EEEEECCCCCCceEEEEECC-CCCEEEEEeCC---------CCcceeEEEEeCCEE
Confidence 456677766555 346888765 99998754 36677876 45443222111 122334444443333
Q ss_pred EEEEe-cceEEEEcCC-CCcccccceecCCCCcEEEeeCCeEEEEe-CCeeEEEECcCCcEEEEEecC-C---ceecC--
Q psy3725 619 FLLVF-HSLAAYVDSQ-GHKSREKEIMYPALPTGASYMDGQLLIFS-ETHVDVFNAESGDWLQTVNIR-R---ALPLD-- 689 (760)
Q Consensus 619 fLLcy-~~~gvfVD~~-G~rsR~~~I~W~~~P~~~ay~~PYLlvf~-~~~IEVr~i~tg~lVQtI~~~-~---ir~L~-- 689 (760)
|.|.. ++.++.+|.. ++..+ .|..++.+.++++..-.|++-+ .+.|-+++..|.+.+.+|... + ++.+|
T Consensus 78 y~ltw~~~~v~v~D~~tl~~~~--ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 78 IQLTWRNHEGFVYDLATLTPRA--RFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp EEEESSSSEEEEEETTTTEEEE--EEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEEEeeCCEEEEEECCcCcEEE--EEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 33433 5566667763 44443 4777788888888777777765 567999999999999998542 2 33333
Q ss_pred --CCCCEEEEe
Q psy3725 690 --TRGSLCFSL 698 (760)
Q Consensus 690 --s~G~l~l~s 698 (760)
.+|.||...
T Consensus 156 e~~~G~lyanv 166 (243)
T 3mbr_X 156 EWVNGELLANV 166 (243)
T ss_dssp EEETTEEEEEE
T ss_pred EEeCCEEEEEE
Confidence 488898665
No 398
>2lix_A IMKTX104, potassium channel toxins; disulfide bond stabilized structure; NMR {Lychas mucronatus}
Probab=34.59 E-value=12 Score=24.24 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=14.1
Q ss_pred CCeEEEEecceEEEEcC
Q psy3725 616 RGEFLLVFHSLAAYVDS 632 (760)
Q Consensus 616 ~~EfLLcy~~~gvfVD~ 632 (760)
++--|||||..|--||.
T Consensus 6 edctllcydtigtcvdg 22 (27)
T 2lix_A 6 EDCTLLCYDTIGTCVDG 22 (27)
Confidence 45679999999999884
No 399
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=28.46 E-value=2.7e+02 Score=24.52 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 80 QSSLNSEIQAKT----QISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 80 qsal~~Ei~akq----~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
.+.||+|-.|-. .+.+.|.-.-+.+..+..+++|.-+..+.+.+....|+.++.+++..++
T Consensus 18 nAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 18 NAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677644321 2223333333333333344444444444444444444444444443333
No 400
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=28.44 E-value=4.3e+02 Score=25.83 Aligned_cols=129 Identities=12% Similarity=0.065 Sum_probs=68.5
Q ss_pred ceEEEEecCceEEEEEcCCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEEEecceEE-EEcCCCC
Q psy3725 557 AQCIHIFSEGRLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVFHSLAA-YVDSQGH 635 (760)
Q Consensus 557 ~~sl~~~~~~~LcVG~~~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLLcy~~~gv-fVD~~G~ 635 (760)
+.++.+-.++.|.||+ .+...+| . ++...--...... .. .+++.-.++.+.+.-..-++ .+|..|+
T Consensus 179 ~~~~~~d~~g~l~v~t-~~l~~~d-~-~g~~~~~~~~~~~--------~~--~~~~~~~~g~l~v~t~~~gl~~~~~~g~ 245 (330)
T 3hxj_A 179 TSAASIGKDGTIYFGS-DKVYAIN-P-DGTEKWNFYAGYW--------TV--TRPAISEDGTIYVTSLDGHLYAINPDGT 245 (330)
T ss_dssp CSCCEECTTCCEEEES-SSEEEEC-T-TSCEEEEECCSSC--------CC--SCCEECTTSCEEEEETTTEEEEECTTSC
T ss_pred eeeeEEcCCCEEEEEe-CEEEEEC-C-CCcEEEEEccCCc--------ce--eceEECCCCeEEEEcCCCeEEEECCCCC
Confidence 3445565667999999 8888888 3 3332211111110 01 11222234455555433233 3466676
Q ss_pred cccccceecCCCCcEEEee-CCeEEEEeCC-eeEEEECcCCcEEEEEecCC--ce-ecC-CCCCEEEEecC
Q psy3725 636 KSREKEIMYPALPTGASYM-DGQLLIFSET-HVDVFNAESGDWLQTVNIRR--AL-PLD-TRGSLCFSLAN 700 (760)
Q Consensus 636 rsR~~~I~W~~~P~~~ay~-~PYLlvf~~~-~IEVr~i~tg~lVQtI~~~~--ir-~L~-s~G~l~l~s~~ 700 (760)
........ ...+.+++.. ...|.+-+.+ .|-.++. +|+.+....... +. ++. .+|.|++++.+
T Consensus 246 ~~~~~~~~-~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~ 314 (330)
T 3hxj_A 246 EKWRFKTG-KRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRN 314 (330)
T ss_dssp EEEEEECS-SCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTT
T ss_pred EeEEeeCC-CCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCC
Confidence 54322111 1122334444 5578877776 7888886 788777765432 22 333 68999987765
No 401
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=28.19 E-value=40 Score=26.59 Aligned_cols=34 Identities=15% Similarity=0.360 Sum_probs=23.6
Q ss_pred ecCCcccCCCcc--cccccccCeeeecCCCcccccc
Q psy3725 218 FTSPTKCNHCTS--LMVGLTRQGVVCDICGFACHLS 251 (760)
Q Consensus 218 f~~pt~C~~C~~--~i~Gl~rQG~~C~~C~~~cH~k 251 (760)
|.....|..|++ ++.-..+.-+.|..||++.-.+
T Consensus 8 ll~~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 8 ALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDR 43 (58)
T ss_dssp CCSCCSBTTBSSSCCEECSSSCCEECTTTCCEECCS
T ss_pred ccccccCcCCCCCceeEeCCCCeEEeCCCCCEEecc
Confidence 344557999975 4444455668999999887654
No 402
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=28.04 E-value=5.9e+02 Score=27.33 Aligned_cols=80 Identities=15% Similarity=0.265 Sum_probs=53.6
Q ss_pred ceEEEEeeeeCCCc-cceEEEEEEecCCceEEEEEEecCC---c-ccceeeeeEecCCc-----ceEEEEec-CceEEEE
Q psy3725 503 GCLSFTTGPLTHTR-TQHCLALAVKRQNSSQIILYEITRT---K-TRHKRLHEVILPTL-----AQCIHIFS-EGRLCVG 571 (760)
Q Consensus 503 gc~~f~~g~~~~~~-~~~~LcVAvKr~~~~~Vl~ye~~~~---k-~~fkk~kE~~lP~~-----~~sl~~~~-~~~LcVG 571 (760)
+|-.|+.-+..+.. .+..+|.|.|+++-.++.+-|++.. . ..-++..|+..|.+ |-+|++.. .|-|.|-
T Consensus 198 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEE
Confidence 45556655555532 2357899999766668888887533 2 22366788888764 55688875 3578888
Q ss_pred EcCCe-EEEEec
Q psy3725 572 YQSGF-SIYKFS 582 (760)
Q Consensus 572 ~~~gF-~ivdl~ 582 (760)
++-|| ++||++
T Consensus 278 TK~G~ihlyDle 289 (365)
T 2xzh_A 278 TKYGYIHLYDLE 289 (365)
T ss_dssp ETTSEEEEEETT
T ss_pred eCCcEEEEEEcc
Confidence 88885 677886
No 403
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=27.82 E-value=4.9e+02 Score=26.35 Aligned_cols=253 Identities=9% Similarity=0.089 Sum_probs=123.0
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCCCceEE-cCCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRYVQIAR-VGDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE 492 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~~~l~r-v~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~ 492 (760)
...|+|.+.- ++.+|+-|.+ + ......... ......|..+..-|+-+.++. +|.+..++++++..-....
T Consensus 64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~las-g~~d~~i~v~~~~~~~~~~ 142 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIAC-GGLDNKCSVYPLTFDKNEN 142 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEE-ESTTSEEEEEECCCCTTCC
T ss_pred CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEE-eeCCCCEEEEEEecccccc
Confidence 5679998843 3446888877 2 111111111 224467889999988776554 5668899999985321111
Q ss_pred c--ceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEec-CCcceEEEEec--Cc-
Q psy3725 493 V--EWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVIL-PTLAQCIHIFS--EG- 566 (760)
Q Consensus 493 ~--~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~l-P~~~~sl~~~~--~~- 566 (760)
. ....+....+. ..++.....+. .|+.+-. .-+|.+|.+...+ .+..+.- ...+.++.|.. ++
T Consensus 143 ~~~~~~~~~~h~~~-v~~~~~~~~~~---~l~t~s~---D~~v~lwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 143 MAAKKKSVAMHTNY-LSACSFTNSDM---QILTASG---DGTCALWDVESGQ----LLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp SGGGCEEEEECSSC-EEEEEECSSSS---EEEEEET---TSEEEEEETTTCC----EEEEEECCSSCEEEEEECCCSSCC
T ss_pred ccccceeeeccCCc-EEEEEEeCCCC---EEEEEeC---CCcEEEEeCCCCe----EEEEEcCCCCCeEEEEEEeCCCCC
Confidence 0 01111111111 11111122222 3443322 2378899875443 2334442 45677788864 22
Q ss_pred eEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeC-CCeEEEE-e-cceEEEEcCCCC-cccccc
Q psy3725 567 RLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELP-RGEFLLV-F-HSLAAYVDSQGH-KSREKE 641 (760)
Q Consensus 567 ~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~-~~EfLLc-y-~~~gvfVD~~G~-rsR~~~ 641 (760)
.|+.|...| ..++|+. ++.....+. ....++..+... ++.+|+. - |....+-|.... ... .
T Consensus 212 ~l~sgs~Dg~v~~wd~~-~~~~~~~~~-----------~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~--~ 277 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMR-SGQCVQAFE-----------THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA--I 277 (354)
T ss_dssp EEEEEETTSCEEEEETT-TCCEEEEEC-----------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--E
T ss_pred EEEEEeCCCeEEEEECC-CCcEEEEec-----------CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE--E
Confidence 666676544 6778886 333322221 112233223322 2333332 1 222222332211 110 0
Q ss_pred eecC---CCCcEEEee--CCeEEEEe-CCeeEEEECcCCcEEEEEecCC--cee--cCCCCCEEEEecC
Q psy3725 642 IMYP---ALPTGASYM--DGQLLIFS-ETHVDVFNAESGDWLQTVNIRR--ALP--LDTRGSLCFSLAN 700 (760)
Q Consensus 642 I~W~---~~P~~~ay~--~PYLlvf~-~~~IEVr~i~tg~lVQtI~~~~--ir~--L~s~G~l~l~s~~ 700 (760)
+.-. ....+++|. ..||++-+ +..|.|+++.+|+.++++.+.. +.- .+++|..++.+..
T Consensus 278 ~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 278 YSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 1101 122345554 34776655 4579999999999999885443 222 2346665544443
No 404
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=27.79 E-value=1.6e+02 Score=30.77 Aligned_cols=36 Identities=11% Similarity=0.296 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 105 IAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 105 ~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
..++.++..++++.+.++.+++.++.+++.++.+++
T Consensus 118 ~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~ 153 (369)
T 4dk0_A 118 NTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLG 153 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555666666666666666666666666554333
No 405
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=27.74 E-value=4.1e+02 Score=25.36 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 93 ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
+.+++...+...-.++.++.+.+.+...+..++..+..++..
T Consensus 221 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (284)
T 1c1g_A 221 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 262 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555555555555444444433
No 406
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=27.69 E-value=2.5e+02 Score=24.55 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=14.0
Q ss_pred HHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 113 DFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 113 e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+.-.+.++|..|+++|+.|-..|.
T Consensus 62 ~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 62 RLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666666655543
No 407
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=27.57 E-value=40 Score=26.35 Aligned_cols=24 Identities=4% Similarity=0.134 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHH
Q psy3725 107 AQKEICDFRLKMESVSMDLRRKDS 130 (760)
Q Consensus 107 ~e~~l~e~e~~~~~l~~e~~~l~~ 130 (760)
+|.++...+..|..|..+++.|..
T Consensus 27 LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 27 LENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544443
No 408
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=27.39 E-value=4.3e+02 Score=26.48 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy3725 25 QALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSEL 104 (760)
Q Consensus 25 q~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~ 104 (760)
++|...|.++|..++.. .++..|--......+|..++. ...+|.|.|..+
T Consensus 90 ~~L~~~v~~~l~~~~~~-----------------------~~~~rK~~~~~~~k~~k~~~~-------~~~~l~KaKk~Y 139 (301)
T 2efk_A 90 ENLSVRVCLELTKYSQE-----------------------MKQERKMHFQEGRRAQQQLEN-------GFKQLENSKRKF 139 (301)
T ss_dssp HHHHHHTHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHH-------HHHhhhHHHHHHHHhhhc
Q psy3725 105 IAAQKEICDFRLKMESVS-------MDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 105 ~~~e~~l~e~e~~~~~l~-------~e~~~l~~e~~~l~~~~~ 140 (760)
.....++..++.+..... .++++++.+.+..+..+.
T Consensus 140 ~~~~~e~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~~~~~~~~ 182 (301)
T 2efk_A 140 ERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAE 182 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCcccCHHHHHHHHHHHHHHHHHHH
No 409
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=27.31 E-value=3.8e+02 Score=29.52 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q psy3725 95 EELSKTRSELIAAQKEICDFRLKMESVSMDLRR 127 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~ 127 (760)
.|+.|.+.....+..++++++..+.....+++.
T Consensus 185 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~ 217 (486)
T 3haj_A 185 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQ 217 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666555555444443
No 410
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=27.20 E-value=2.1e+02 Score=23.65 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 102 SELIAAQKEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 102 ~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
..|-.+|.+++.++.++++=+.+=++++.|++
T Consensus 14 ~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk 45 (72)
T 3cve_A 14 IRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 411
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=27.18 E-value=94 Score=42.86 Aligned_cols=8 Identities=13% Similarity=0.152 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy3725 108 QKEICDFR 115 (760)
Q Consensus 108 e~~l~e~e 115 (760)
+.+|++.+
T Consensus 2034 ~~~L~~le 2041 (3245)
T 3vkg_A 2034 VATITALE 2041 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 412
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=26.99 E-value=4.4e+02 Score=25.57 Aligned_cols=234 Identities=10% Similarity=0.043 Sum_probs=111.9
Q ss_pred CCeeEEEEec-CCC-eEEEEEc-C------CCCC----CceEEc--CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECC
Q psy3725 422 TKKIYQMDYI-PKE-QLLVVLA-G------KQRY----VQIARV--GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVR 486 (760)
Q Consensus 422 ~~~i~Caa~~-~~~-rllvGTe-~------l~~~----~~l~rv--~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~ 486 (760)
...|+|.+.- +++ .|+=|.+ + +... ....+. +....|..+.+-++.+.|+.- +.+..++++...
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~-~~d~~i~~~~~~ 116 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG-SWDGTLRLWDLT 116 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETT
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE-cccccceEEeec
Confidence 5678888842 333 4665665 2 2221 112222 345789999999987776654 457889988874
Q ss_pred CccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCc
Q psy3725 487 ALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG 566 (760)
Q Consensus 487 ~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~ 566 (760)
.... ............... ....+. +|+.+-. .-.+.+|....... .......-...+..+.|..++
T Consensus 117 ~~~~---~~~~~~~~~~~~~~~--~~~~~~---~l~s~s~---d~~~~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 117 TGTT---TRRFVGHTKDVLSVA--FSSDNR---QIVSGSR---DKTIKLWNTLGVCK--YTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp TTEE---EEEEECCSSCEEEEE--ECTTSS---CEEEEET---TSCEEEECTTSCEE--EEECSSSCSSCEEEEEECSCS
T ss_pred ccce---eeeecCCCCceeEEE--EeecCc---cceeecC---CCeEEEEEeCCCce--EEEEeccccCcccceEEccCC
Confidence 3221 111111111111111 111222 3333322 11566776533211 111111224556677776432
Q ss_pred --eEEE-EEc-CCeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeC-CCeEEEEe--cceEEEEcCCC-Cccc
Q psy3725 567 --RLCV-GYQ-SGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELP-RGEFLLVF--HSLAAYVDSQG-HKSR 638 (760)
Q Consensus 567 --~LcV-G~~-~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~-~~EfLLcy--~~~gvfVD~~G-~rsR 638 (760)
.+++ |.. ....++|+. +......+. ....++..+..+ ++.+|++- |..-.+-|... +..
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~-~~~~~~~~~-----------~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~- 250 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLA-NCKLKTNHI-----------GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL- 250 (340)
T ss_dssp SSCEEEEEETTSCEEEEETT-TTEEEEEEC-----------CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-
T ss_pred CCcEEEEEcCCCEEEEEECC-CCceeeEec-----------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee-
Confidence 3433 333 235566775 222221111 123344444443 44555532 22222334322 221
Q ss_pred ccceecCCCCcEEEeeCC--eEEEEeCCeeEEEECcCCcEEEEEecC
Q psy3725 639 EKEIMYPALPTGASYMDG--QLLIFSETHVDVFNAESGDWLQTVNIR 683 (760)
Q Consensus 639 ~~~I~W~~~P~~~ay~~P--YLlvf~~~~IEVr~i~tg~lVQtI~~~ 683 (760)
..+.-......+++... ++.+..++.|.|+++.++..++.+...
T Consensus 251 -~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 296 (340)
T 4aow_A 251 -YTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQE 296 (340)
T ss_dssp -EEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC
T ss_pred -eeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEecccc
Confidence 12333333344555432 566667889999999999999987543
No 413
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=26.89 E-value=6.7e+02 Score=27.63 Aligned_cols=250 Identities=10% Similarity=0.060 Sum_probs=119.9
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCCCceEEc--------CCCCCeeEEEEecCCCeEEEEECCCCeEEEEEC
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRYVQIARV--------GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPV 485 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~~~l~rv--------~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L 485 (760)
...|+|.+.- ++..|+-|.. + +.....+..+ +....|..+..-|+-+.|+.-+ .++.|+++++
T Consensus 190 ~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s-~D~~v~lWd~ 268 (611)
T 1nr0_A 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS-ADKTIKIWNV 268 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE-TTSEEEEEET
T ss_pred cCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEe-CCCeEEEEeC
Confidence 4567787742 3445777776 2 2222122222 3556899999999888776654 5789999998
Q ss_pred CCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeE-ecCCcceEEEEec
Q psy3725 486 RALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEV-ILPTLAQCIHIFS 564 (760)
Q Consensus 486 ~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~-~lP~~~~sl~~~~ 564 (760)
..... ..............+.+.. . +. .++.+-. .-.|.+|...... ....+ .-...+.+++|.+
T Consensus 269 ~~~~~--~~~~~~~~~~~~~~~~~~~-~-~~---~l~s~s~---d~~i~~~~~~~~~----~~~~~~gh~~~v~~l~~sp 334 (611)
T 1nr0_A 269 ATLKV--EKTIPVGTRIEDQQLGIIW-T-KQ---ALVSISA---NGFINFVNPELGS----IDQVRYGHNKAITALSSSA 334 (611)
T ss_dssp TTTEE--EEEEECCSSGGGCEEEEEE-C-SS---CEEEEET---TCCEEEEETTTTE----EEEEECCCSSCEEEEEECT
T ss_pred CCCce--eeeecCCCCccceeEEEEE-c-CC---EEEEEeC---CCcEEEEeCCCCC----cceEEcCCCCCEEEEEEeC
Confidence 53211 0011111100001111111 2 22 2332221 1256777754332 11222 2346788999998
Q ss_pred Cc-eEEEEEcC-CeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEeCCCeEEE--EecceEEEEcCCCCcccc-
Q psy3725 565 EG-RLCVGYQS-GFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLL--VFHSLAAYVDSQGHKSRE- 639 (760)
Q Consensus 565 ~~-~LcVG~~~-gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l~~~EfLL--cy~~~gvfVD~~G~rsR~- 639 (760)
+| .|..|... ...++|+. ++....++. .....++..+..+++..|+ ..|......|..+.....
T Consensus 335 dg~~l~s~s~D~~v~~Wd~~-~~~~~~~~~----------~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~ 403 (611)
T 1nr0_A 335 DGKTLFSADAEGHINSWDIS-TGISNRVFP----------DVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSS 403 (611)
T ss_dssp TSSEEEEEETTSCEEEEETT-TCCEEECSS----------CSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTT
T ss_pred CCCEEEEEeCCCcEEEEECC-CCceeeecc----------cCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccccc
Confidence 76 45555543 46777876 333222211 1122333333333333332 223333344444332211
Q ss_pred --cceecCCCCcEEEeeCC--eEEEEeCCeeEEEECcCCcEEEEEecCC-cee--cCCCCCEEEEecC
Q psy3725 640 --KEIMYPALPTGASYMDG--QLLIFSETHVDVFNAESGDWLQTVNIRR-ALP--LDTRGSLCFSLAN 700 (760)
Q Consensus 640 --~~I~W~~~P~~~ay~~P--YLlvf~~~~IEVr~i~tg~lVQtI~~~~-ir~--L~s~G~l~l~s~~ 700 (760)
........|..+++... ++++...+.|.+++ ++. +++++... +.. +.++|.+++.+..
T Consensus 404 ~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~~~~~v~~va~spdg~~lasgs~ 468 (611)
T 1nr0_A 404 KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVPISYNSSCVALSNDKQFVAVGGQ 468 (611)
T ss_dssp SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred ceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeeecCCCceEEEEeCCCCEEEEeCC
Confidence 12345566777776543 66666777777776 455 55554322 211 2345655544433
No 414
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=26.82 E-value=2.9e+02 Score=23.32 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=42.6
Q ss_pred HHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHH-----------HHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 73 KMELLNLQSSLNSEIQAKTQISEELSKTRSELIA-----------AQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 73 ~~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~-----------~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
..+.++-..+|+.||.+++..-+.+.+.=..++. .+.+|.+...+-..|..........+++
T Consensus 38 v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~ 110 (119)
T 3uun_A 38 VKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHR 110 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777789999999999888888776555543 3455666666666666666665555544
No 415
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=26.70 E-value=1.6e+02 Score=33.06 Aligned_cols=27 Identities=15% Similarity=0.307 Sum_probs=23.5
Q ss_pred cceEEEeeCCHHHHHHHHHHHHHHHHH
Q psy3725 374 KNHTLMLADSDTEKTKWVVALSELHRI 400 (760)
Q Consensus 374 ~~~l~LlA~S~~ek~kWv~~L~~~~~~ 400 (760)
...+.|.|.|..+|+.|+..|..+...
T Consensus 499 ~~~~~L~A~S~eEK~~W~~~I~~aI~~ 525 (536)
T 3odw_A 499 AQIYELVAQTVSERKNWCALITETAGS 525 (536)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 357889999999999999999988753
No 416
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=26.57 E-value=5.3e+02 Score=26.31 Aligned_cols=236 Identities=11% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceE
Q psy3725 453 GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQ 532 (760)
Q Consensus 453 ~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~ 532 (760)
++...|+.+..-|+.+.|+.-+. +..|+++++..-.. ...+....+......--..+.. +++...-. .
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~-D~~v~iWd~~~~~~----~~~~~~h~~~v~~~~~s~~g~~---las~~~d~----~ 131 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQ-DGRLIVWNALTSQK----THAIKLHCPWVMECAFAPNGQS---VACGGLDS----A 131 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEET-TSEEEEEETTTTEE----EEEEECCCTTCCCCEECTTSSE---EEECCSSS----C
T ss_pred ccccEEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcc----ceEEecCCCCEEEEEECCCCCE---EEEeeCCC----c
Q ss_pred EEEEEecCCcccceeeeeEec----CCcceEEEEec--CceEEEEEcCC-eEEEEecCCCCceeecCCCCCcccccccCC
Q psy3725 533 IILYEITRTKTRHKRLHEVIL----PTLAQCIHIFS--EGRLCVGYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSP 605 (760)
Q Consensus 533 Vl~ye~~~~k~~fkk~kE~~l----P~~~~sl~~~~--~~~LcVG~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~ 605 (760)
|.+|.+......-....-..+ ...+.++.|.+ +..|..|...+ ..++|+. ++.....+....+. +.
T Consensus 132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~-~~~~~~~~~~~~~~------~h 204 (380)
T 3iz6_a 132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT-TGQRISIFGSEFPS------GH 204 (380)
T ss_dssp CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT-TCCEEEEECCCSSS------SC
T ss_pred EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC-CCcEEEEeecccCC------CC
Q ss_pred CCceEEEEeC--CCeEEE--EecceEEEEcCC-CCcccccceecCCCCcEEEeeCC---eEEEEeCCeeEEEECcCCcEE
Q psy3725 606 VDALLAIELP--RGEFLL--VFHSLAAYVDSQ-GHKSREKEIMYPALPTGASYMDG---QLLIFSETHVDVFNAESGDWL 677 (760)
Q Consensus 606 ~~pl~i~~l~--~~EfLL--cy~~~gvfVD~~-G~rsR~~~I~W~~~P~~~ay~~P---YLlvf~~~~IEVr~i~tg~lV 677 (760)
..++..+... ++.+|+ ..|.....-|.. +...-..----.+...+++|... .+.+-.+..|-|+++.+|..+
T Consensus 205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284 (380)
T ss_dssp CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Q ss_pred EEEecCCce-----------ecCCCCCEEEEecCCccEEEE
Q psy3725 678 QTVNIRRAL-----------PLDTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 678 QtI~~~~ir-----------~L~s~G~l~l~s~~~~~~~~~ 707 (760)
+++....-+ -...+|.+++++..+-.+.++
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vw 325 (380)
T 3iz6_a 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325 (380)
T ss_dssp EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEE
T ss_pred EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEE
No 417
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=26.49 E-value=4.2e+02 Score=26.94 Aligned_cols=42 Identities=10% Similarity=0.050 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
.+.+++.++.........+|..+++++...-+|++.++.+.+
T Consensus 140 ~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~ 181 (312)
T 3abh_A 140 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREA 181 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666777777777777777776665543
No 418
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=26.48 E-value=3.2e+02 Score=23.74 Aligned_cols=23 Identities=9% Similarity=0.359 Sum_probs=18.7
Q ss_pred HHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 114 FRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 114 ~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
-.++.++|..||+.|+.++.++.
T Consensus 65 qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 65 QQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999988754
No 419
>3n06_A Prolactin, PRL; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3nce_A 3mzg_A 3ncc_A 2q98_A 3d48_P 3ncb_A 3n0p_A 3ncf_A 1n9d_A 1rw5_A 3npz_A 3ew3_A
Probab=25.94 E-value=2.3e+02 Score=27.33 Aligned_cols=107 Identities=14% Similarity=0.137 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCC---CCCCCcCCCCCCCCCCcccchhhHHHHHHHhhhHHHH-HHHHHHHHhhHHHH
Q psy3725 22 SYLQALTTKTTQELEYLKHASSLGG---PGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQSSL-NSEIQAKTQISEEL 97 (760)
Q Consensus 22 ~ylq~la~k~~~ele~lr~~~~~~~---~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~lqsal-~~Ei~akq~i~eeL 97 (760)
.||..||++|..|.|.--..+...- ...|-++.-.-|.++ ...|+..-.++|.+=-.| ++=+.-=+.+.-|+
T Consensus 14 ~~ih~ls~~~~~eFe~~~~~~~~~~~k~~~~ChT~si~tP~~k----eeaqq~s~~~LL~~~l~Ll~SW~~PL~~L~~~~ 89 (186)
T 3n06_A 14 AYIHNLSSEMFSEFDKRYTHGRGFITKAINSCHTSSLATPEDK----EQAQQMNQKDFLSLIVSILRSWNEPLYHLVTEV 89 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCHHHHHTTCCTTTTSCCCCSH----HHHHHSCHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccccCCCCcCCCCCCCCCCCH----HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999987654321100 455655444444442 233333344444332221 11111113333344
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 98 SKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 98 ~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
+....+.-+.=+|++|.+.++++|.+-++.+-.++
T Consensus 90 ~~l~~~~~~il~Kakei~e~~~~L~egi~~i~~~~ 124 (186)
T 3n06_A 90 RGMQEAPEAILSKAVEIEEQTKRLLERMELIVSQV 124 (186)
T ss_dssp HTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 43333334455788899999999888888776554
No 420
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=25.93 E-value=1.1e+02 Score=21.59 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 107 AQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 107 ~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
+|-|+.|.=.++.+|..|+.+|++-+
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 56667777777777777777776654
No 421
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.63 E-value=2.9e+02 Score=24.86 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy3725 93 ISEELSKTRSELIAAQKEICDFR 115 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~~l~e~e 115 (760)
++-||...+..+.++|..|.++|
T Consensus 48 L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 48 LRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 422
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=25.62 E-value=2.2e+02 Score=31.93 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=10.0
Q ss_pred HHhHHHHHHHHhhhHHHHHHHH
Q psy3725 115 RLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 115 e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
.++.++|..+++.+++++.+++
T Consensus 122 ~~~~~~l~~~i~~l~~~~~~~~ 143 (501)
T 1wle_A 122 RARGREIRKQLTLLYPKEAQLE 143 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 423
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=25.56 E-value=2.8e+02 Score=24.84 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHhhhHHHHHHHH
Q psy3725 82 SLNSEIQAKTQISEELSKTRSELIAAQKEICDF----RLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 82 al~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~----e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
.|+++. ..+.++|.+..+.--.+|..+++. +++..+|...++.=...+++++
T Consensus 10 ~lq~~~---~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lq 65 (112)
T 1x79_B 10 KLQLML---RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQ 65 (112)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 424
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=25.46 E-value=81 Score=34.63 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=21.7
Q ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 111 ICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 111 l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
..+..++.++|..+++.+++++.+++..+.
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 66 KEALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888888888877765444
No 425
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=25.41 E-value=3.3e+02 Score=23.50 Aligned_cols=42 Identities=12% Similarity=0.194 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
.+++||-++...+..+..+|.+.++...+-..|+..|.+.+.
T Consensus 55 ~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 55 GTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666655543
No 426
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=25.24 E-value=6e+02 Score=26.52 Aligned_cols=114 Identities=7% Similarity=0.041 Sum_probs=65.4
Q ss_pred CCCeeEEEEecCCCeEEEEECCC--CeEEEEECCCccCCCcceeecCcccc-eEEEEeeeeCCCccceEEEEEEecCCce
Q psy3725 455 TKKIYQMDYIPEEQLLVVLAGKQ--RYVRLVPVRALDGDEVEWVKIPETKG-CLSFTTGPLTHTRTQHCLALAVKRQNSS 531 (760)
Q Consensus 455 ~k~V~QI~Vi~e~~lLlvLsgk~--r~L~l~~L~~L~~~~~~~~kl~etKg-c~~f~~g~~~~~~~~~~LcVAvKr~~~~ 531 (760)
...|..+..-|+-+.|+..+..+ ..|+++++..- . ...+....+ ...++ ....+. .|+++..+.+..
T Consensus 178 ~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg---~--~~~l~~~~~~~~~~~--~spdg~---~la~~~~~~g~~ 247 (415)
T 2hqs_A 178 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---A--VRQVASFPRHNGAPA--FSPDGS---KLAFALSKTGSL 247 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---C--EEEEECCSSCEEEEE--ECTTSS---EEEEEECTTSSC
T ss_pred CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC---c--EEEeecCCCcccCEE--EcCCCC---EEEEEEecCCCc
Confidence 45789999999988888887532 58999998531 1 122322222 22222 222344 455444333355
Q ss_pred EEEEEEecCCcccceeeeeEecCCcceEEEEecCce-EEEEEcCC----eEEEEec
Q psy3725 532 QIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGR-LCVGYQSG----FSIYKFS 582 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~-LcVG~~~g----F~ivdl~ 582 (760)
.|++|.+...+. +.+ ...+..+.++.|.++|+ |+++...+ ..++|+.
T Consensus 248 ~i~~~d~~~~~~--~~l--~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 248 NLYVMDLASGQI--RQV--TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp EEEEEETTTCCE--EEC--CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred eEEEEECCCCCE--EeC--cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 788898754331 221 22346678899998874 77777542 3444664
No 427
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.23 E-value=1.4e+02 Score=33.41 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=11.2
Q ss_pred HHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 111 ICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 111 l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
+++.++++++|..++..++.++.+
T Consensus 80 ~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 80 KEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 428
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=25.10 E-value=65 Score=32.98 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhc
Q psy3725 103 ELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLE 140 (760)
Q Consensus 103 ~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~~~~ 140 (760)
.+..++.++....+||+.|..++..+++|++.++..++
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEle 92 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 92 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888888899899999999999988886555
No 429
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=24.89 E-value=36 Score=32.84 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=28.1
Q ss_pred CcccCCCcccccccccCeeeecCCCccccccccc
Q psy3725 221 PTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCD 254 (760)
Q Consensus 221 pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~ 254 (760)
.+.|..|+..|.-.. +-++|..|+..--.||+.
T Consensus 140 ~a~~~~~g~~m~~~~-~~~~cp~~g~~e~RKva~ 172 (179)
T 3m7n_A 140 RALCSNCKTEMVREG-DILKCPECGRVEKRKIST 172 (179)
T ss_dssp ECBCTTTCCBCEECS-SSEECSSSCCEECCCBCT
T ss_pred EecccccCCceEECC-CEEECCCCCCEEEEeccc
Confidence 358989999998877 889999999988888764
No 430
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=24.87 E-value=1.3e+02 Score=24.33 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKMESVSMDL 125 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~ 125 (760)
.|.|||..++....++..++.+.+.+..||..-+
T Consensus 14 ~i~~el~eLq~~~~~~~aki~e~krkl~eLsHRi 47 (65)
T 3t97_B 14 IISEDISELQKNQTTTMAKIAQYKRKLMDLSHRT 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5789999999999999999999999999988765
No 431
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=24.77 E-value=3e+02 Score=24.10 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy3725 105 IAAQKEICDFRLKMESVSMDLRRKDSQL 132 (760)
Q Consensus 105 ~~~e~~l~e~e~~~~~l~~e~~~l~~e~ 132 (760)
-.+......+++.+.+|..-|+.|++||
T Consensus 67 AeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 67 AESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444455566666666666666665
No 432
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.58 E-value=1.7e+02 Score=24.90 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=12.6
Q ss_pred HHhHHHHHHHHhhhHHHHHHHH
Q psy3725 115 RLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 115 e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
.+++..|..|+..++++.++++
T Consensus 52 h~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 52 HKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666554
No 433
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=24.49 E-value=1.2e+02 Score=20.50 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHH
Q psy3725 106 AAQKEICDFRLKMESVSMDLRRKDS 130 (760)
Q Consensus 106 ~~e~~l~e~e~~~~~l~~e~~~l~~ 130 (760)
.+|+++-.+|+.|-.|.+|+..|+-
T Consensus 5 qlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3566666667777677666666644
No 434
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=24.40 E-value=2.1e+02 Score=23.97 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 94 SEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 94 ~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
.|-|.+.|+.+.+.|+.+.+.|.+....+.+...+..+++
T Consensus 29 ~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLD 68 (77)
T 3mtu_E 29 TEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLD 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3457788899999988888887766655555555554443
No 435
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=24.25 E-value=5.1e+02 Score=25.38 Aligned_cols=37 Identities=16% Similarity=0.441 Sum_probs=27.8
Q ss_pred EEEeeCCeEEEEe-------CCeeEEEECcCCcEEEEEecCCce
Q psy3725 650 GASYMDGQLLIFS-------ETHVDVFNAESGDWLQTVNIRRAL 686 (760)
Q Consensus 650 ~~ay~~PYLlvf~-------~~~IEVr~i~tg~lVQtI~~~~ir 686 (760)
+++.....|++|. .+.++++++.++.|.+.-+++..|
T Consensus 199 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r 242 (302)
T 2xn4_A 199 GVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR 242 (302)
T ss_dssp EEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred cEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcc
Confidence 4556678888885 467999999999999875544433
No 436
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=24.14 E-value=5.3e+02 Score=25.51 Aligned_cols=36 Identities=11% Similarity=0.326 Sum_probs=27.5
Q ss_pred EEEeeCCeEEEEe-------CCeeEEEECcCCcEEEEEecCCc
Q psy3725 650 GASYMDGQLLIFS-------ETHVDVFNAESGDWLQTVNIRRA 685 (760)
Q Consensus 650 ~~ay~~PYLlvf~-------~~~IEVr~i~tg~lVQtI~~~~i 685 (760)
+++.....|++|. .+.++++++.+..|.+.-+++..
T Consensus 210 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 252 (308)
T 1zgk_A 210 GVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 252 (308)
T ss_dssp EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC
T ss_pred eEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC
Confidence 4556678899886 47799999999999986544443
No 437
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=24.10 E-value=1.2e+02 Score=25.35 Aligned_cols=12 Identities=33% Similarity=0.218 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhc
Q psy3725 30 KTTQELEYLKHA 41 (760)
Q Consensus 30 k~~~ele~lr~~ 41 (760)
.|-+=++.||..
T Consensus 15 ~lk~~f~~Lr~~ 26 (80)
T 1nlw_A 15 HLRLSLEKLKGL 26 (80)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH
Confidence 455667888876
No 438
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=24.09 E-value=1.2e+02 Score=20.31 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhHHHH
Q psy3725 106 AAQKEICDFRLKMESV 121 (760)
Q Consensus 106 ~~e~~l~e~e~~~~~l 121 (760)
++|++||..|++.+.|
T Consensus 12 alesklqalekkleal 27 (31)
T 3ljm_A 12 ALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666665555544
No 439
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=24.02 E-value=2.9e+02 Score=24.83 Aligned_cols=33 Identities=24% Similarity=0.502 Sum_probs=20.9
Q ss_pred cccCCCcccccccccCeeeecCCCcccccccccc
Q psy3725 222 TKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDK 255 (760)
Q Consensus 222 t~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~ 255 (760)
..|..|..- .++.+.--.|..||.++-..|...
T Consensus 70 ~~C~~C~~~-Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKG-FSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCB-CCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCc-cccccccccCCCCCeEEChHHhCC
Confidence 356667663 345555577888887766666554
No 440
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=24.01 E-value=82 Score=26.30 Aligned_cols=12 Identities=8% Similarity=0.277 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhc
Q psy3725 30 KTTQELEYLKHA 41 (760)
Q Consensus 30 k~~~ele~lr~~ 41 (760)
+|-+=++.||..
T Consensus 16 ~in~~f~~Lr~l 27 (83)
T 1nkp_B 16 HIKDSFHSLRDS 27 (83)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 456667788865
No 441
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=23.92 E-value=16 Score=40.47 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=0.0
Q ss_pred ccceeeeeecccCCCCCCcceEEEeeCCHHHHHHHHHHHHHHHHHH
Q psy3725 356 DIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRIL 401 (760)
Q Consensus 356 dip~if~it~s~l~~~~~~~~l~LlA~S~~ek~kWv~~L~~~~~~l 401 (760)
+.|+.|.|... ..+++|.|+|..+|+.|+.+|.++....
T Consensus 326 ~~~~~F~i~~~-------~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 364 (510)
T 3jzy_A 326 SDEPVFHISHI-------DRVYTLRTDNINERTAWVQKIKAASEQY 364 (510)
T ss_dssp ----------------------------------------------
T ss_pred ccccceeeecc-------ceeEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 56889999532 2478999999999999999999887754
No 442
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=23.80 E-value=3.4e+02 Score=23.15 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=24.3
Q ss_pred HhhhHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 76 LLNLQSSLNSEIQAKTQISEELSKTRSE----LIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 76 ~l~lqsal~~Ei~akq~i~eeL~k~~~~----~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
+-.|..+++.|++=|+. .|-|.++-.+ ....+.+|..+..+.++|..|++.|
T Consensus 27 r~~ir~eI~KElKiKeG-aENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL 82 (86)
T 1cxz_B 27 RERLRREIRKELKLKEG-AENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQEL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHh-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555554 2333333322 2334444555555555555444443
No 443
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=23.74 E-value=85 Score=26.31 Aligned_cols=28 Identities=7% Similarity=0.109 Sum_probs=15.1
Q ss_pred HHHHHhHHHHHHHHhhhHHHHHHHHhhh
Q psy3725 112 CDFRLKMESVSMDLRRKDSQLKELQSRL 139 (760)
Q Consensus 112 ~e~e~~~~~l~~e~~~l~~e~~~l~~~~ 139 (760)
+..+.+...|..|++.|+.+.++|+.++
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666666666555443
No 444
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=23.71 E-value=5.6e+02 Score=25.58 Aligned_cols=235 Identities=12% Similarity=0.131 Sum_probs=118.7
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C------CCCCCceEEc-CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCC
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G------KQRYVQIARV-GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDE 492 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~------l~~~~~l~rv-~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~ 492 (760)
...|.|.+.- ++..|+-|+. + +.....+..+ .....|..+...++.+.++.- +.+..++++++..-.+..
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d~~v~iw~~~~~~~~~ 133 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG-GLDNICSIYNLKTREGNV 133 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEE-ETTCEEEEEETTTCSBSC
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEE-eCCCeEEEEECccCCCcc
Confidence 5678888743 3445788876 2 2222122222 244679999999987776654 457899999985432211
Q ss_pred cceeecCcccc-eEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCce-EE
Q psy3725 493 VEWVKIPETKG-CLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEGR-LC 569 (760)
Q Consensus 493 ~~~~kl~etKg-c~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~~-Lc 569 (760)
.....+....+ ....+. ..++ .++.+-. .-+|.+|.+...+ ....+. ....+.++.|.++++ |+
T Consensus 134 ~~~~~~~~h~~~v~~~~~--~~~~----~l~s~s~---d~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 134 RVSRELAGHTGYLSCCRF--LDDN----QIVTSSG---DTTCALWDIETGQ----QTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp EEEEEEECCSSCEEEEEE--EETT----EEEEEET---TSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEE
T ss_pred eeEEEecCCCccEEEEEE--CCCC----cEEEEEC---CCcEEEEECCCCc----EEEEEcCCCCceEEEEECCCCCEEE
Confidence 01112221111 111111 1122 2333321 2268889875433 223333 356788999998764 45
Q ss_pred EEEcC-CeEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEe-CCCeEEEEe--cceEEEEcCC-CCcccccceec
Q psy3725 570 VGYQS-GFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIEL-PRGEFLLVF--HSLAAYVDSQ-GHKSREKEIMY 644 (760)
Q Consensus 570 VG~~~-gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l-~~~EfLLcy--~~~gvfVD~~-G~rsR~~~I~W 644 (760)
.|... ...++|+. ++.....+. ....++..+.. +++.+|++- |..-.+-|.. |.... .+..
T Consensus 201 sg~~d~~v~~wd~~-~~~~~~~~~-----------~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~--~~~~ 266 (340)
T 1got_B 201 SGACDASAKLWDVR-EGMCRQTFT-----------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM--TYSH 266 (340)
T ss_dssp EEETTSCEEEEETT-TCSEEEEEC-----------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--EECC
T ss_pred EEeCCCcEEEEECC-CCeeEEEEc-----------CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE--EEcc
Confidence 55544 46778886 333222111 11233333333 234444322 2222223322 22111 1111
Q ss_pred CC---CCcEEEeeC--CeEEEEeC-CeeEEEECcCCcEEEEEecCC
Q psy3725 645 PA---LPTGASYMD--GQLLIFSE-THVDVFNAESGDWLQTVNIRR 684 (760)
Q Consensus 645 ~~---~P~~~ay~~--PYLlvf~~-~~IEVr~i~tg~lVQtI~~~~ 684 (760)
+. ...+++|.. .||++-+. ..|.|+++.++..++++.+..
T Consensus 267 ~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~ 312 (340)
T 1got_B 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD 312 (340)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC
Confidence 21 224555643 46666554 579999999999999986654
No 445
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.53 E-value=1.6e+02 Score=21.71 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 105 IAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 105 ~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
..+|.+.++.+.++.||.+-+..|..|-.=
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~m 35 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQM 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345666666666666666666666555433
No 446
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=23.47 E-value=2.2e+02 Score=28.47 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=14.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhHHHHHH
Q psy3725 71 LEKMELLNLQSSLNSEIQAKTQISEELSK 99 (760)
Q Consensus 71 ~~~~~~l~lqsal~~Ei~akq~i~eeL~k 99 (760)
-+|.++||..+-.++=-..-+.+..|+.-
T Consensus 185 ~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~ 213 (252)
T 3ljc_A 185 ADKQSVLEMSDVNERLEYLMAMMESEIDL 213 (252)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 34555665555444444444445555543
No 447
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=23.47 E-value=68 Score=25.95 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
.+-+|+.++..+.-..++.|.=.+.+.+||..=+..+++++++
T Consensus 16 ~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v~~ 58 (64)
T 3t97_C 16 SLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESVKE 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4557778888888888888888898888888888888777764
No 448
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=23.45 E-value=88 Score=26.76 Aligned_cols=39 Identities=23% Similarity=0.414 Sum_probs=26.7
Q ss_pred CcccCCCcccccccccCeeeecCCCcccccccccccCCCCCC
Q psy3725 221 PTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPV 262 (760)
Q Consensus 221 pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp~~C~~ 262 (760)
+..|..|..- +|+. .++.|. |+.+.-.+-.-.-...|+.
T Consensus 25 ~~rC~~C~kk-vgl~-~~f~Cr-Cg~~FC~~HRy~e~H~C~f 63 (85)
T 1wff_A 25 MKHCFLCGKK-TGLA-TSFECR-CGNNFCASHRYAEAHGCNY 63 (85)
T ss_dssp CCBCSSSCCB-CSSS-SCEECT-TCCEECTTTCSTGGGTCCS
T ss_pred CccchhhCCe-eccc-CCeEcC-CCCEecccCCCccCCCCcc
Confidence 4689999985 5764 689997 9977633333334556754
No 449
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=23.17 E-value=3e+02 Score=22.28 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 106 AAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 106 ~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
++..++.|.+.+.+.|..|++.+
T Consensus 53 ~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 53 QAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444443
No 450
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.06 E-value=83 Score=20.56 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=16.7
Q ss_pred HHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 112 CDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 112 ~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
+..+++|..|.+||..|+-|+..+
T Consensus 3 rrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHh
Confidence 345667777888888887776553
No 451
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=23.02 E-value=96 Score=21.35 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=14.7
Q ss_pred HHhhhHHHHHHHHHHHHhhHHHHHHHH
Q psy3725 75 ELLNLQSSLNSEIQAKTQISEELSKTR 101 (760)
Q Consensus 75 ~~l~lqsal~~Ei~akq~i~eeL~k~~ 101 (760)
+.-|-|.|.+.|||| |.||...++
T Consensus 6 aikeeqaaieeeiqa---ikeeiaaik 29 (36)
T 1bb1_B 6 AIKEEQAAIEEEIQA---IKEEIAAIK 29 (36)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 445667777777754 556665443
No 452
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=22.83 E-value=96 Score=20.12 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=13.5
Q ss_pred HHhHHHHHHHHhhhHHHHHHH
Q psy3725 115 RLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 115 e~~~~~l~~e~~~l~~e~~~l 135 (760)
+....||.-|+..|+.|.+++
T Consensus 6 kdevgelkgevralkdevkdl 26 (27)
T 3v86_A 6 KDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHhcc
Confidence 345566777777777776654
No 453
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=22.70 E-value=1.8e+02 Score=32.15 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=13.6
Q ss_pred HHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 113 DFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 113 e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
+..++.++|..+++.+++++.+++.
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555543
No 454
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=22.67 E-value=54 Score=31.06 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=27.3
Q ss_pred CcccCCCcccccccccCeeeecCCCccccccccccc
Q psy3725 221 PTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKV 256 (760)
Q Consensus 221 pt~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~v 256 (760)
...|..|..-+--+...|..|.+|+..+-.+|....
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~ 103 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAH 103 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECC
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhccccccc
Confidence 357999988543345679999999999888887544
No 455
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=21.96 E-value=5e+02 Score=24.44 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
...+++......+-.+|.+-..++.....|..+|++|..++..
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777778877777777777777777777766654
No 456
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=21.96 E-value=3.6e+02 Score=22.75 Aligned_cols=53 Identities=30% Similarity=0.459 Sum_probs=38.4
Q ss_pred HHhhhHHHHHHHHHHHHhhHHHHH--------HHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 75 ELLNLQSSLNSEIQAKTQISEELS--------KTRSELIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 75 ~~l~lqsal~~Ei~akq~i~eeL~--------k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
-+.+|+..|+-|.+-||.- |-+- +-|--+-++++.|+|++.+++-|..+|.+.
T Consensus 9 rl~~L~kqL~IElkVK~GA-ENmi~~y~~g~~~drKlLaeAQqmL~DSk~KIe~lRmqI~k~ 69 (81)
T 1urf_A 9 RVAGLEKQLAIELKVKQGA-ENMIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDIIRMQLRRA 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999888773 2221 224455668888999999999888888664
No 457
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=21.83 E-value=3.9e+02 Score=23.04 Aligned_cols=76 Identities=11% Similarity=0.220 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHhhhHHHHHHHHH----HHHhhHHHH
Q psy3725 22 SYLQALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQSSLNSEIQ----AKTQISEEL 97 (760)
Q Consensus 22 ~ylq~la~k~~~ele~lr~~~~~~~~~~~~~~~~~~~~~~~w~~rr~~k~~~~~~l~lqsal~~Ei~----akq~i~eeL 97 (760)
.|++.|+.+|.+.|.-.|.. +=+++..|...-. .=|.|..=|
T Consensus 8 ~yF~~lv~~fe~rL~~Yr~~----------------------------------IeelE~~L~s~s~~~~~Tpq~L~~~l 53 (93)
T 3t98_B 8 DYFRVLVQQFEVQLQQYRQQ----------------------------------IEELENHLATQANNSHITPQDLSMAM 53 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHHSCHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 68999999999988888864 1123333333211 126788888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHH
Q psy3725 98 SKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQ 131 (760)
Q Consensus 98 ~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e 131 (760)
.+.-+..+++-.++.+...+.+.++++--++++.
T Consensus 54 ~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~ 87 (93)
T 3t98_B 54 QKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888988888888888877777766666554
No 458
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=21.70 E-value=1.4e+02 Score=24.71 Aligned_cols=43 Identities=5% Similarity=0.037 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy3725 93 ISEELSKTRSELIAAQK-------EICDFRLKMESVSMDLRRKDSQLKEL 135 (760)
Q Consensus 93 i~eeL~k~~~~~~~~e~-------~l~e~e~~~~~l~~e~~~l~~e~~~l 135 (760)
++.|......+...+|+ ||++.|..+++...|...+.+.+.++
T Consensus 14 Lk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~I 63 (75)
T 3mtu_A 14 LKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVDI 63 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55666677777777787 88888887777666555555555443
No 459
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.67 E-value=1.1e+02 Score=25.45 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=9.7
Q ss_pred HHhHHHHHHHHhhhHHHHHHHH
Q psy3725 115 RLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 115 e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
+.++++|..|++.|+.+.++|+
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 460
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=21.63 E-value=7.6e+02 Score=26.66 Aligned_cols=39 Identities=13% Similarity=0.212 Sum_probs=31.9
Q ss_pred CCCcEEEeeCC--eEEEEe---CCeeEEEECcCCcEEEEEecCC
Q psy3725 646 ALPTGASYMDG--QLLIFS---ETHVDVFNAESGDWLQTVNIRR 684 (760)
Q Consensus 646 ~~P~~~ay~~P--YLlvf~---~~~IEVr~i~tg~lVQtI~~~~ 684 (760)
..|..+++..- ||++.+ .+.|-|+++.+++.+.+|+...
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g 220 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD 220 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC
Confidence 46888888643 888875 4689999999999999998754
No 461
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.29 E-value=1.8e+02 Score=24.74 Aligned_cols=12 Identities=8% Similarity=0.127 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhc
Q psy3725 30 KTTQELEYLKHA 41 (760)
Q Consensus 30 k~~~ele~lr~~ 41 (760)
+|-+=.+.||..
T Consensus 20 ~ln~~f~~Lr~~ 31 (88)
T 1nkp_A 20 ELKRSFFALRDQ 31 (88)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 456677888876
No 462
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.24 E-value=2.2e+02 Score=26.32 Aligned_cols=37 Identities=5% Similarity=0.154 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRK 128 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l 128 (760)
.+.+|+.+...++.....+-.++|++...+..|+|.|
T Consensus 43 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~L 79 (135)
T 2e7s_A 43 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 79 (135)
T ss_dssp THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444444444444555555555555544
No 463
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=21.10 E-value=7.7e+02 Score=26.25 Aligned_cols=251 Identities=10% Similarity=0.173 Sum_probs=127.3
Q ss_pred CCeeEEEEec-CCCeEEEEEc-C-C---CCCC-ceEEc-CCCCCeeEEEEecCCCeEEEEECCCCeEEEEECCCccCCCc
Q psy3725 422 TKKIYQMDYI-PKEQLLVVLA-G-K---QRYV-QIARV-GDTKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEV 493 (760)
Q Consensus 422 ~~~i~Caa~~-~~~rllvGTe-~-l---~~~~-~l~rv-~~~k~V~QI~Vi~e~~lLlvLsgk~r~L~l~~L~~L~~~~~ 493 (760)
...|.|.+.. ++..|+.|++ + + +.+. .+..+ +....|..+.+.++.+.++.-+. ++.+++++... ..
T Consensus 221 ~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~-d~~i~~w~~~~---~~- 295 (577)
T 2ymu_A 221 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASD-DKTVKLWNRNG---QL- 295 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTS---CE-
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCEEEEEeCCC---cE-
Confidence 3457777643 3445888877 2 1 1221 22222 34567999999998888777654 67899988632 10
Q ss_pred ceeecCc-ccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEe-cCCcceEEEEecCc-eEEE
Q psy3725 494 EWVKIPE-TKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVI-LPTLAQCIHIFSEG-RLCV 570 (760)
Q Consensus 494 ~~~kl~e-tKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~-lP~~~~sl~~~~~~-~LcV 570 (760)
...+.. .......+ ....+. .|+.+-. .-+|.+|..+.. ....+. .+.++.+++|.+++ .|..
T Consensus 296 -~~~~~~h~~~v~~~~--~~~~~~---~l~t~~~---d~~i~~w~~~~~-----~~~~~~~~~~~v~~~~~s~~g~~l~~ 361 (577)
T 2ymu_A 296 -LQTLTGHSSSVWGVA--FSPDGQ---TIASASD---DKTVKLWNRNGQ-----HLQTLTGHSSSVWGVAFSPDGQTIAS 361 (577)
T ss_dssp -EEEECCCSSCEEEEE--ECTTSS---EEEEEET---TSCEEEEETTSC-----EEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred -EEEEecCCCCeEEEE--ECCCCC---EEEEEeC---CCeEEEEeCCCC-----eeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 112221 12222222 222333 4444432 125777875422 122232 35678889999776 5666
Q ss_pred EEcCC-eEEEEecCCCCceeecCCCCCcccccccCCCCceEEEEe-CCCeEEEE-ecceEE-EEcCCCCcccccceecC-
Q psy3725 571 GYQSG-FSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIEL-PRGEFLLV-FHSLAA-YVDSQGHKSREKEIMYP- 645 (760)
Q Consensus 571 G~~~g-F~ivdl~~~~~~~~Ll~~~d~sl~f~~~~~~~pl~i~~l-~~~EfLLc-y~~~gv-fVD~~G~rsR~~~I~W~- 645 (760)
|...| ..+++.. +....-+. ....++..+.. +++.+|+. ..+-.| +-|.+|+..+. +.=.
T Consensus 362 ~~~dg~v~~~~~~--~~~~~~~~-----------~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~--~~~~~ 426 (577)
T 2ymu_A 362 ASDDKTVKLWNRN--GQLLQTLT-----------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT--LTGHS 426 (577)
T ss_dssp EETTSEEEEEETT--CCEEEEEE-----------CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEE--EECCS
T ss_pred EeCCCEEEEEcCC--CCEEEEec-----------CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEE--ecCCC
Confidence 77765 4556653 22221111 11233333333 34455543 222222 33666654432 2222
Q ss_pred CCCcEEEeeC--CeEEEEe-CCeeEEEECcCCcEEEEEecCC--cee--cCCCCCEEEEecCCccEEEE
Q psy3725 646 ALPTGASYMD--GQLLIFS-ETHVDVFNAESGDWLQTVNIRR--ALP--LDTRGSLCFSLANDIPYVVY 707 (760)
Q Consensus 646 ~~P~~~ay~~--PYLlvf~-~~~IEVr~i~tg~lVQtI~~~~--ir~--L~s~G~l~l~s~~~~~~~~~ 707 (760)
....+++|.. .+|..-. +..|.|+++ +++.++++.... +.- ..++|.+.+...++-.+.++
T Consensus 427 ~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw 494 (577)
T 2ymu_A 427 SSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred CCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 2234566643 3666555 457999996 678888886544 322 23566666554443433333
No 464
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.87 E-value=1.9e+02 Score=31.62 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=22.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q psy3725 91 TQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRR 127 (760)
Q Consensus 91 q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~ 127 (760)
..+.+||..++......+.+.++.+..++++.+++.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666555543
No 465
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=20.74 E-value=6.6e+02 Score=25.35 Aligned_cols=149 Identities=9% Similarity=0.069 Sum_probs=79.1
Q ss_pred EEEEEEecCCceEEEEEEec-CCcccceeeeeEecC---CcceEEEEecCc-eEEEEEcC--CeEEEEecC-CCCce---
Q psy3725 520 CLALAVKRQNSSQIILYEIT-RTKTRHKRLHEVILP---TLAQCIHIFSEG-RLCVGYQS--GFSIYKFSQ-DNRPI--- 588 (760)
Q Consensus 520 ~LcVAvKr~~~~~Vl~ye~~-~~k~~fkk~kE~~lP---~~~~sl~~~~~~-~LcVG~~~--gF~ivdl~~-~~~~~--- 588 (760)
+|+++-.. .-+|.+|.+. .++ +....++.+| ..|..+.|.++| .|.|+... .-.+++++. ++...
T Consensus 158 ~l~~~~~~--~~~v~~~~~~~~g~--~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~ 233 (365)
T 1jof_A 158 YLYSADLT--ANKLWTHRKLASGE--VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTH 233 (365)
T ss_dssp EEEEEETT--TTEEEEEEECTTSC--EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred EEEEEcCC--CCEEEEEEECCCCC--EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEcc
Confidence 56655421 2368888876 333 3444556544 458889999887 46666542 345666641 22211
Q ss_pred -eec-CCCCCcccccccC-----CCCceEEEEe-CCCeEEEEec---------ceEEE-EcCCCCcccccc-eec-CCCC
Q psy3725 589 -PLI-HQDNPLVSLLTYS-----PVDALLAIEL-PRGEFLLVFH---------SLAAY-VDSQGHKSREKE-IMY-PALP 648 (760)
Q Consensus 589 -~Ll-~~~d~sl~f~~~~-----~~~pl~i~~l-~~~EfLLcy~---------~~gvf-VD~~G~rsR~~~-I~W-~~~P 648 (760)
.+. .+.. +.... ...|..+..+ +++.+|.+-+ ...+| ++..|+..+... +.+ ...|
T Consensus 234 ~~~~~~~~~----~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~ 309 (365)
T 1jof_A 234 HSFPLIPPG----IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG 309 (365)
T ss_dssp EEEESSCTT----CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT
T ss_pred ceEEcCCCC----cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc
Confidence 110 0110 00000 0023333314 4566776432 35566 555676543222 443 3457
Q ss_pred cEEEeeC-----CeEEEEeC--CeeEEEECcCCcE
Q psy3725 649 TGASYMD-----GQLLIFSE--THVDVFNAESGDW 676 (760)
Q Consensus 649 ~~~ay~~-----PYLlvf~~--~~IEVr~i~tg~l 676 (760)
..+++.. -||++... +.|.|+++....|
T Consensus 310 ~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 310 HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp TCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred ccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence 7787764 48888764 6899999987743
No 466
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=20.69 E-value=3.2e+02 Score=26.44 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=11.1
Q ss_pred HHHhHHHHHHHH-hhhHHHHHHHHh
Q psy3725 114 FRLKMESVSMDL-RRKDSQLKELQS 137 (760)
Q Consensus 114 ~e~~~~~l~~e~-~~l~~e~~~l~~ 137 (760)
.+.++.-..+|+ +++...+++++.
T Consensus 133 lr~~L~Py~eelr~kl~~~~eeLr~ 157 (191)
T 1nfn_A 133 LRVRLASHLRKLRKRLLRDADDLQK 157 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 333333333333 345555666654
No 467
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=20.54 E-value=2.4e+02 Score=22.40 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=18.2
Q ss_pred HHHHhhhHHHHHH-------HHHHHHhhHHHHHHHH
Q psy3725 73 KMELLNLQSSLNS-------EIQAKTQISEELSKTR 101 (760)
Q Consensus 73 ~~~~l~lqsal~~-------Ei~akq~i~eeL~k~~ 101 (760)
+.|-||+..||-+ =++..+.++|||+..+
T Consensus 12 ~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ 47 (63)
T 2w6a_A 12 LQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQ 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHH
Confidence 5677777777643 3456666777776543
No 468
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=20.50 E-value=1e+02 Score=28.65 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3725 95 EELSKTRSELIAAQKEICD 113 (760)
Q Consensus 95 eeL~k~~~~~~~~e~~l~e 113 (760)
+||.++|.++..+|++|+.
T Consensus 6 ~Ele~lr~aL~~AE~eLe~ 24 (136)
T 3ter_A 6 TEMENLRVQLEEAERRLEA 24 (136)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6777777777777766654
No 469
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.48 E-value=6e+02 Score=28.16 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy3725 21 RSYLQALTTKTTQELEYLKHA 41 (760)
Q Consensus 21 r~ylq~la~k~~~ele~lr~~ 41 (760)
.+||-.--..+..+|+.|++.
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~ 108 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDR 108 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHH
Confidence 455555555566677777754
No 470
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=20.41 E-value=2.4e+02 Score=23.61 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=20.0
Q ss_pred HHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy3725 82 SLNSEIQ-AKTQISEELSKTRSELIAAQKEICDFRLKMESVSMD 124 (760)
Q Consensus 82 al~~Ei~-akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e 124 (760)
+|++.|+ +.+....++...+......|..|++++........|
T Consensus 12 sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~E 55 (84)
T 1gk4_A 12 SLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLRE 55 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444332 333344455555555555555555555444443333
No 471
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=20.39 E-value=3.9e+02 Score=22.53 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=25.1
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHh
Q psy3725 95 EELSKTRSELI-------AAQKEICDFRLKMESVSMDLRRKDSQLKELQS 137 (760)
Q Consensus 95 eeL~k~~~~~~-------~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~~ 137 (760)
-|++..|-..- ..|.||+..+..+..|+.+++.++.|++-++.
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~ 75 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34555554444 44566666666666666666666666665553
No 472
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=20.39 E-value=6.2e+02 Score=24.84 Aligned_cols=154 Identities=7% Similarity=0.034 Sum_probs=0.0
Q ss_pred EEEEEEecCCcccceeeeeEecCCcceEEEEecCceEEE--EEc------CCeEEEEecCCCCceeecCCCCCccccccc
Q psy3725 532 QIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRLCV--GYQ------SGFSIYKFSQDNRPIPLIHQDNPLVSLLTY 603 (760)
Q Consensus 532 ~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~~LcV--G~~------~gF~ivdl~~~~~~~~Ll~~~d~sl~f~~~ 603 (760)
.+.+|.+..+. +..+..+..|-.-.++..+++ +|.| |.. +..+.||+. +..-..+.+ ..
T Consensus 71 ~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~-~~~W~~~~~---------~p 137 (306)
T 3ii7_A 71 RMDCYNVVKDS--WYSKLGPPTPRDSLAACAAEG-KIYTSGGSEVGNSALYLFECYDTR-TESWHTKPS---------ML 137 (306)
T ss_dssp EEEEEETTTTE--EEEEECCSSCCBSCEEEEETT-EEEEECCBBTTBSCCCCEEEEETT-TTEEEEECC---------CS
T ss_pred eEEEEeCCCCe--EEECCCCCccccceeEEEECC-EEEEECCCCCCCcEeeeEEEEeCC-CCceEeCCC---------Cc
Q ss_pred CCCCceEEEEeCCCeEEEE-----------ecceEEEEcCCCCcccccceecCCCCcEEEeeCCeEEEE-------eCCe
Q psy3725 604 SPVDALLAIELPRGEFLLV-----------FHSLAAYVDSQGHKSREKEIMYPALPTGASYMDGQLLIF-------SETH 665 (760)
Q Consensus 604 ~~~~pl~i~~l~~~EfLLc-----------y~~~gvfVD~~G~rsR~~~I~W~~~P~~~ay~~PYLlvf-------~~~~ 665 (760)
.+..-.+++.+++.=|++. .+.+-+|=-..+.-+.-..+.-+..-.+++....+|++| ..+.
T Consensus 138 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~ 217 (306)
T 3ii7_A 138 TQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDN 217 (306)
T ss_dssp SCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCC
T ss_pred CCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCce
Q ss_pred eEEEECcCCcEEEEEecCCceecCC----CCCEEEEe
Q psy3725 666 VDVFNAESGDWLQTVNIRRALPLDT----RGSLCFSL 698 (760)
Q Consensus 666 IEVr~i~tg~lVQtI~~~~ir~L~s----~G~l~l~s 698 (760)
|+++++.++.|.+.-+++..|.-.. +|.||+.+
T Consensus 218 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 254 (306)
T 3ii7_A 218 VEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLA 254 (306)
T ss_dssp EEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEE
T ss_pred EEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEe
No 473
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=20.31 E-value=33 Score=29.37 Aligned_cols=33 Identities=18% Similarity=0.482 Sum_probs=25.5
Q ss_pred cccCCCcccccccccCeeeecCCCcccccccccccC
Q psy3725 222 TKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVP 257 (760)
Q Consensus 222 t~C~~C~~~i~Gl~rQG~~C~~C~~~cH~kC~~~vp 257 (760)
..|.+|.. |. ..--+.|+.|+-++|..|-....
T Consensus 16 ~~C~VC~~--~t-~~~l~pCRvC~RvfH~~CL~r~g 48 (89)
T 1wil_A 16 EMCDVCEV--WT-AESLFPCRVCTRVFHDGCLRRMG 48 (89)
T ss_dssp CCCTTTCC--CC-SSCCSSCSSSSSCCCHHHHHHHT
T ss_pred cccCcccc--cc-ccceeccccccccccHhhccccc
Confidence 47999985 44 23458899999999999977653
No 474
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.25 E-value=1.1e+02 Score=26.87 Aligned_cols=40 Identities=15% Similarity=0.338 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy3725 91 TQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQ 136 (760)
Q Consensus 91 q~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~l~ 136 (760)
.+||-||..+++.+- +..+.=..+|..||+.|.+++..+.
T Consensus 28 hQVQqELs~tfarLc------~~Vd~t~~eL~~EI~~L~~eI~~LE 67 (96)
T 1t3j_A 28 HQVQQEMATTFARLC------QQVDMTQKHLEEEIARLSKEIDQLE 67 (96)
T ss_dssp -------CCHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=20.20 E-value=58 Score=30.10 Aligned_cols=35 Identities=26% Similarity=0.582 Sum_probs=27.8
Q ss_pred cccCCCcccccc-cccCeeeecCCCcccccccccccC
Q psy3725 222 TKCNHCTSLMVG-LTRQGVVCDICGFACHLSCCDKVP 257 (760)
Q Consensus 222 t~C~~C~~~i~G-l~rQG~~C~~C~~~cH~kC~~~vp 257 (760)
..|..|..-. | +...|..|.+|+..+-.+|...++
T Consensus 56 ~~C~~C~~~~-g~l~~~g~~C~~C~~~VC~~C~~~~~ 91 (134)
T 1zbd_B 56 NRCILCGEQL-GMLGSASVVCEDCKKNVCTKCGVETS 91 (134)
T ss_dssp SBCSSSCCBC-STTSCCEEECTTTCCEEETTSEEECC
T ss_pred ccccccCCCc-ccccCCCCCCCCCCcccccccCCccC
Confidence 4699999864 4 356789999999998888877764
No 476
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=20.16 E-value=2.6e+02 Score=25.89 Aligned_cols=60 Identities=27% Similarity=0.283 Sum_probs=39.1
Q ss_pred HHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy3725 74 MELLNLQSSLNSEIQAKTQISEELSKTRSELIA--------AQKEICDFRLKMESVSMDLRRKDSQLK 133 (760)
Q Consensus 74 ~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~--------~e~~l~e~e~~~~~l~~e~~~l~~e~~ 133 (760)
...|.=..++++||.|.+..-+.+.+.-.+++. .+.+|.+...+-++|....+.....++
T Consensus 91 ~~ll~kH~afe~El~a~~~~~~~l~~~g~~Li~~~~~~~~~I~~rl~eL~~~W~~L~~~~~~R~~~L~ 158 (161)
T 3lbx_A 91 QGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLWDLLLELTLEKGDQLL 158 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667789999999998888888776655543 235555555555555555555555544
No 477
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.10 E-value=1.4e+02 Score=27.66 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy3725 92 QISEELSKTRSELIAAQKEICDFRLKMESVSMD 124 (760)
Q Consensus 92 ~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e 124 (760)
.++++|..-++.-..+|++....++..++|...
T Consensus 50 ~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 50 RLREDIAKENELRTKAEEEADKLNKEVEDLTAS 82 (135)
T ss_dssp THHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555443
No 478
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=20.06 E-value=8.9e+02 Score=26.57 Aligned_cols=145 Identities=9% Similarity=0.023 Sum_probs=0.0
Q ss_pred CeeEEEEecCCCeEEEEEc-------CCCCC--CceEEcCCCCCeeEEE-EecCCC-eEEEEECCCCeEEEEECCCccCC
Q psy3725 423 KKIYQMDYIPKEQLLVVLA-------GKQRY--VQIARVGDTKKIYQMD-YIPEEQ-LLVVLAGKQRYVRLVPVRALDGD 491 (760)
Q Consensus 423 ~~i~Caa~~~~~rllvGTe-------~l~~~--~~l~rv~~~k~V~QI~-Vi~e~~-lLlvLsgk~r~L~l~~L~~L~~~ 491 (760)
..|.|.+...++.|+.|+. ++... ....--++...|..|. ..+..+ -+++=++.++.|+++++ ...
T Consensus 267 ~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~---~~~ 343 (524)
T 2j04_B 267 SLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP---KDI 343 (524)
T ss_dssp TCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECG---GGH
T ss_pred CCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEEC---CCC
Q ss_pred CcceeecCcccceEEEEeeeeCCCccceEEEEEEecCCceEEEEEEecCCcccceeeeeEecCCcceEEEEecCc-eEEE
Q psy3725 492 EVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEG-RLCV 570 (760)
Q Consensus 492 ~~~~~kl~etKgc~~f~~g~~~~~~~~~~LcVAvKr~~~~~Vl~ye~~~~k~~fkk~kE~~lP~~~~sl~~~~~~-~LcV 570 (760)
...........+....++.....+. .++++ ...-+|.+|.+......+.... -...|.+|+|.++| .|+.
T Consensus 344 ~~~~~~~~~~~~~~v~~v~fsp~~~---~l~s~---~~d~tv~lwd~~~~~~~~~l~g---H~~~V~sva~Sp~g~~l~S 414 (524)
T 2j04_B 344 ATTKTTVSRFRGSNLVPVVYCPQIY---SYIYS---DGASSLRAVPSRAAFAVHPLVS---RETTITAIGVSRLHPMVLA 414 (524)
T ss_dssp HHHCEEEEECSCCSCCCEEEETTTT---EEEEE---CSSSEEEEEETTCTTCCEEEEE---CSSCEEEEECCSSCCBCEE
T ss_pred CcccccccccccCcccceEeCCCcC---eEEEe---CCCCcEEEEECcccccceeeec---CCCceEEEEeCCCCCeEEE
Q ss_pred EEcCCeEEE
Q psy3725 571 GYQSGFSIY 579 (760)
Q Consensus 571 G~~~gF~iv 579 (760)
|...|-..+
T Consensus 415 gs~Dgtv~l 423 (524)
T 2j04_B 415 GSADGSLII 423 (524)
T ss_dssp EETTTEEEC
T ss_pred EECCCEEEE
No 479
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=20.06 E-value=3.2e+02 Score=24.75 Aligned_cols=61 Identities=10% Similarity=0.163 Sum_probs=39.0
Q ss_pred HHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy3725 74 MELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134 (760)
Q Consensus 74 ~~~l~lqsal~~Ei~akq~i~eeL~k~~~~~~~~e~~l~e~e~~~~~l~~e~~~l~~e~~~ 134 (760)
...|.=|.++.++|.+|-.=-++..++|-=--.....+++.+.-..+|..+|+...+=+..
T Consensus 40 ~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~n 100 (119)
T 2avr_X 40 RQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISD 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778888888877766555565555444445555666666666666666666555443
Done!