RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3725
(760 letters)
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 137 bits (345), Expect = 3e-38
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 283 YEGYVKVPKTGGVKK-GWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAV 341
EG++ +P KK GWV+++V+V K+ YD D+ +VLD+ D+ F V
Sbjct: 3 LEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSN---PYMVLDI-DKLFHV 58
Query: 342 SGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRIL 401
V ++DV A K+IP IF+I + KN L+LA+S E+ KWV L +I
Sbjct: 59 RPVTQTDVYRADAKEIPRIFQILYANEGISSAKN-LLLLANSTEEQQKWVSRLV--KKIP 115
Query: 402 KR 403
K+
Sbjct: 116 KK 117
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 85
Score = 98.4 bits (245), Expect = 5e-25
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 205 DRSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPP 264
D H+F T+ SPT C+HC SL+ GL QG+ CD C H C VP C +
Sbjct: 12 DDPRSKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLCGMDH 71
Query: 265 DQTKRPLGIDP 275
+ + + +
Sbjct: 72 TEKRGRIYLKA 82
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain,
zinc-binding domain, endocytosis/exocytosis,signaling
protein complex; NMR {Rattus norvegicus}
Length = 66
Score = 94.9 bits (236), Expect = 4e-24
Identities = 21/59 (35%), Positives = 27/59 (45%)
Query: 204 HDRSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPV 262
H F T T+PT C C L+ G+ RQG+ C CG CH C D + C +
Sbjct: 7 GGGGGIQHNFEVWTATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLLNADCKL 65
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding,
DAG/PE-binding protein, diacylglycerol, phorbol ester,
TCR, T-cell, structural genomics; NMR {Homo sapiens}
Length = 65
Score = 93.7 bits (233), Expect = 1e-23
Identities = 23/59 (38%), Positives = 30/59 (50%)
Query: 204 HDRSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPV 262
+ H+F + SPT C HC +L+ GL RQG+ CD CG H C KV C +
Sbjct: 6 SGKIDMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLCGI 64
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 93.0 bits (231), Expect = 4e-23
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 209 KHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPPDQTK 268
K+H+FI F PT C+ C + GL +QG C C A H C DK+ C ++
Sbjct: 16 KNHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKIIGRCTGTAANSR 75
Query: 269 RPLGIDPTRG 278
G P+ G
Sbjct: 76 DTSG--PSSG 83
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus
musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Length = 50
Score = 89.0 bits (221), Expect = 4e-22
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 211 HQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSC 260
H+F + SPT C+HC SL+ GL +QG+ C+ CG H C +KV C
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 50
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich
domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 88.8 bits (220), Expect = 9e-22
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 208 SKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPS-CPVP 263
K H+F F P C+ C ++V + G+ C C H C V C P
Sbjct: 15 DKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYVEMQRCSGP 71
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding,
DAG/PE-binding protein, diacylglycerol, phorbol ester,
TCR, T-cell, structural genomics; NMR {Homo sapiens}
Length = 77
Score = 87.1 bits (216), Expect = 4e-21
Identities = 20/51 (39%), Positives = 24/51 (47%)
Query: 211 HQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCP 261
H+F F PT C+ C + GL +QG C C A H C DKV C
Sbjct: 24 HEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDKVIAKCT 74
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto-
oncogene, zinc, ATP-binding, phorbol-ester binding; NMR
{Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Length = 52
Score = 79.4 bits (196), Expect = 1e-18
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 209 KHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSC 260
H F +TF C+ C ++ G C CG+ H C KVP C
Sbjct: 2 TTHNFARKTFLKLAFCDICQKFLL----NGFRCQTCGYKFHEHCSTKVPTMC 49
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 84
Score = 69.0 bits (168), Expect = 1e-14
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 209 KHHQFITRTFTSPTKCNHCTSLMVGLTR--QGVVCDICGFACHLSCCDKVPPSCP 261
K H+FI + PT C C + + + + C C CH DK
Sbjct: 23 KGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMDKKEEIIA 77
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 75.7 bits (186), Expect = 2e-14
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 1/112 (0%)
Query: 160 KESRHTGSVESEDGDIEDNRVPSIASSRSNLSELTIDQMNNMLRHDRSSKHHQFITRTFT 219
+ V E D D+ S + S + + + + K H F TF
Sbjct: 159 PAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVHTFR 218
Query: 220 SPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPPDQTKRPL 271
P C +C + M GL QGV C CG H C VP C P + + +
Sbjct: 219 GPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDC-KPDLKHVKKV 269
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis,
cysteine rich domain; NMR {Mus musculus}
Length = 72
Score = 65.3 bits (159), Expect = 1e-13
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 206 RSSKHHQFITRTFTS-PTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSC 260
+ H+F+ P C+ C ++ RQ + C C F CH C + C
Sbjct: 19 ERGEGHRFVELALRGGPGWCDLCGREVL---RQALRCANCKFTCHSECRSLIQLDC 71
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal
transduction, apoptosis, cysteine rich domain, metal
binding protein; NMR {Mus musculus}
Length = 59
Score = 64.9 bits (158), Expect = 1e-13
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 211 HQFITRTFTS-PTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSC 260
H+F+ P C+ C ++ RQ + C C F CH C + C
Sbjct: 11 HRFVELALRGGPGWCDLCGREVL---RQALRCANCKFTCHSECRSLIQLDC 58
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 67.0 bits (163), Expect = 1e-11
Identities = 52/284 (18%), Positives = 84/284 (29%), Gaps = 20/284 (7%)
Query: 197 QMNNMLRHDRSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKV 256
+ D H+F T++SPT C+HC SL+ GL QG+ CD C H C V
Sbjct: 89 GADKGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNV 148
Query: 257 PPSCPV----PPDQTKRPLGIDPTRGIGTAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLF 312
P C + ID I + VP + ++ D K
Sbjct: 149 PSLCGTDHTERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSE 208
Query: 313 --LYDISPDRNALPAVYVSLVLDMRDEDFAVSG-VRESDVIHATKKDIPCIFRITTSLMD 369
+ + P + +++ D V D ++ D S +
Sbjct: 209 SKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQ 268
Query: 370 PPGTKNHTLMLADSDTEKTK-WVVALSELHRILKRNNLPNHTVSTPKIARVGDTKKIYQM 428
G +L+ + E V R + A T
Sbjct: 269 KAGVDGWFKLLSQEEGEYFNVPVPPEGSEGNEELRQKFERAKIGQGTKAPEEKTANTISK 328
Query: 429 DYIPKE---------QLLVVLAGKQRY--VQIARVGDTKKIYQM 461
L+VL GK + V ++ T ++Y +
Sbjct: 329 FDNNGNRDRMKLTDFNFLMVL-GKGSFGKVMLSERKGTDELYAV 371
Score = 66.2 bits (161), Expect = 2e-11
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 209 KHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCP 261
K+H+F R F PT C+HCT + G +QG C +C F H C + V SCP
Sbjct: 36 KNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCP 88
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 55.2 bits (133), Expect = 4e-08
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 196 DQMNNMLRHDRSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDK 255
++N+ + ++ H F +F T C C L+ G QG C C H C +
Sbjct: 332 MAISNIYPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391
Query: 256 VPP 258
VPP
Sbjct: 392 VPP 394
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding
protein, signaling protein; NMR {Mus musculus} SCOP:
g.49.1.1 PDB: 1kbf_A
Length = 49
Score = 46.9 bits (111), Expect = 3e-07
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 208 SKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSC 260
S H+F + CN C M+ GV C C CH C K P+C
Sbjct: 2 SVTHRF-STKSWLSQVCNVCQKSMI----FGVKCKHCRLKCHNKCT-KEAPAC 48
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding
domain, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
g.49.1.1
Length = 84
Score = 45.4 bits (107), Expect = 2e-06
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 201 MLRHDRSSKHHQFITRTFTSPTKCNHCT-SLMVGLTRQGVVCDICGFACHLSCCDKVPPS 259
+ D + HQ++ KC C + L Q C C H SC + +
Sbjct: 18 IEDADGIAMPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTK 77
Query: 260 CPVPPD 265
C P
Sbjct: 78 CSGPSS 83
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 46.3 bits (110), Expect = 3e-06
Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 22/132 (16%)
Query: 266 QTKRPLGIDPTRGIGTAYEGY-VKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALP 324
KR + G+ K + K W +++ V+ D LF Y + + L
Sbjct: 7 GGKRSHSMKRNPNAPVTKAGWLFK--QASSGVKQWNKRWFVLVDRCLFYYKDEKEESILG 64
Query: 325 AVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSD 384
++ + F V+ V+ SD F+ G + + A+S
Sbjct: 65 SIPL--------LSFRVAAVQPSD-----NISRKHTFKAEH-----AGVRTYFFS-AESP 105
Query: 385 TEKTKWVVALSE 396
E+ W+ A+ E
Sbjct: 106 EEQEAWIQAMGE 117
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 3e-06
Identities = 82/544 (15%), Positives = 155/544 (28%), Gaps = 204/544 (37%)
Query: 130 SQLKE-----LQSRLESGDILERPASQISYLDHFLK------ESRHTGSVES-------- 170
SQL+E L E + P + + FL E G +
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 171 -EDGDIEDNRVPSIASSRSNLSELTIDQMNNMLRHDRSSKHHQFITRTFTSPTKCNHCTS 229
E+ +E N + ++A+ ++ T+ + ++++ +++ R F ++
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARI--MAKRPFDKK----SNSA 144
Query: 230 LMVGLTRQGV-VCDICGFACHLSCCDKVPPSCPVPPDQTKRPLGIDPT-----RGIGTAY 283
L + + I G Q G R + Y
Sbjct: 145 LFRAVGEGNAQLVAIFG-------------------GQ-----GNTDDYFEELRDLYQTY 180
Query: 284 EGYVK--VPKTGGVKKGWVRQ-------FVVVCDFKLFLYDIS--PDRNALPAVYVSLVL 332
V + + +R F + +L + S PD++ L ++ +S L
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 333 ---------------------DMRDEDFAVSGVRESDVIHAT---------------KKD 356
++R +G + ++ A +K
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ-GLVTAVAIAETDSWESFFVSVRKA 299
Query: 357 IPCIFRI---------TTSLMDPP---------GTKNHTLMLADSDTEKTKWVVALSELH 398
I +F I TSL PP + ML+ S+ + ++
Sbjct: 300 ITVLFFIGVRCYEAYPNTSL--PPSILEDSLENNEGVPSPMLSISN-------LTQEQVQ 350
Query: 399 RILKRNN--LPNH-TVSTPKIARV-GDTKKIYQMDYIPKEQLLVVLAGKQRYVQIARVGD 454
+ + N LP V I+ V G +V++G
Sbjct: 351 DYVNKTNSHLPAGKQVE---ISLVNGAKN--------------LVVSGP----------- 382
Query: 455 TKKIYQMDYIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGCLSFTTG--PL 512
P+ L G +R +A G + +IP ++ L F+ P+
Sbjct: 383 ----------PQS-----LYGLNLTLR--KAKAPSGLDQS--RIPFSERKLKFSNRFLPV 423
Query: 513 T---HTRTQHCLALAVK-------------RQNSSQIILYEITRTKTRHKRLHEVILPTL 556
H+ H L A QI +Y+ T + + L I +
Sbjct: 424 ASPFHS---HLLVPASDLINKDLVKNNVSFNAKDIQIPVYD-TFDGSDLRVLSGSISERI 479
Query: 557 AQCI 560
CI
Sbjct: 480 VDCI 483
Score = 49.3 bits (117), Expect = 5e-06
Identities = 61/418 (14%), Positives = 112/418 (26%), Gaps = 158/418 (37%)
Query: 392 VALSELHR-ILKRNNLPNHTV-------STPKIARVGDTKKIYQMDY---------IPKE 434
+ L+E L+ N++ H + + + + + K Y K+
Sbjct: 86 LCLTEFENCYLEGNDI--HALAAKLLQENDTTLVKTKELIKNY---ITARIMAKRPFDKK 140
Query: 435 Q---LL-VVLAGKQR-YV----QIARVGDT-------KKIYQMDYIPEEQLLVVLAGK-- 476
L V G + Q G+T + +YQ Y L+ + +
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQ----GNTDDYFEELRDLYQ-TYHVLVGDLIKFSAETL 195
Query: 477 QRYVRLVP-VRAL--DG-DEVEWVKIPETKGCLSFTTGPLTHTRTQHCLALAVKRQNSSQ 532
+R + G + +EW++ P + L
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY-------------LLSI-------- 234
Query: 533 IILYEITRTKTRHKRLHEVILP--TLAQCIHIFSEGRLCVGYQSGFSIYKFSQDNRPIPL 590
+ P + Q H + GF+ + +
Sbjct: 235 -----------------PISCPLIGVIQLAHYVVTAK-----LLGFTPGELRSYLKGATG 272
Query: 591 IHQDNPLVSLLTYSPVD--------ALLAIELPRGEFLLVFHSLAAYVDSQGHKSREKEI 642
Q LV+ + + D AI + F + AY + S I
Sbjct: 273 HSQG--LVTAVAIAETDSWESFFVSVRKAITV---LFFIGVRCYEAY----PNTSLPPSI 323
Query: 643 MYPALPTG---ASYM-------DGQLLIFSETHVDVFNAESGDWLQTVNIRRALPLDTRG 692
+ +L S M Q+ + +V+ N+ LP +
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQV----QDYVNKTNSH-------------LPAGKQV 366
Query: 693 SLCFSLANDIP--YVV-------YLANIHQRELINLMTGGD-------MRQPRPKRRF 734
+ SL N VV Y N+ R+ +G D R+ + RF
Sbjct: 367 EI--SLVNG-AKNLVVSGPPQSLYGLNLTLRK-AKAPSGLDQSRIPFSERKLKFSNRF 420
Score = 40.4 bits (94), Expect = 0.003
Identities = 35/178 (19%), Positives = 52/178 (29%), Gaps = 70/178 (39%)
Query: 575 GFSIYKFSQDNRPIPL-IHQDNP-------LVSLLTY-SPVDALLAIEL----------- 614
GFSI +N P+ L IH S + + + VD L E
Sbjct: 1658 GFSILDIVINN-PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 615 -----PRG-----EF----LLVFHSLAAYVD--SQGHKSREK--------EIMYPALPTG 650
+G +F L + AA+ D S+G + E Y AL +
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTL-MEKAAFEDLKSKGLIPADATFAGHSLGE--YAALASL 1773
Query: 651 ASYMDGQLLIFSETHVDVFNAESGDWLQTVNIR-----RALPLDTRGSLCFSLANDIP 703
A M ++ V R A+P D G + + P
Sbjct: 1774 ADVMS-----IESL------------VEVVFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Score = 38.1 bits (88), Expect = 0.013
Identities = 29/182 (15%), Positives = 56/182 (30%), Gaps = 48/182 (26%)
Query: 527 RQNSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFSEGRL-----------CVGYQSG 575
R+N S +I I K + +++ + I +G L +
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK--- 1741
Query: 576 FSIYKFSQDNRPIPLI-----HQDNPLVSLLTYSPVDALLAIELPRGEFL-------LVF 623
+ ++ + IP H SL Y+ AL ++ + + +VF
Sbjct: 1742 -AAFEDLKSKGLIPADATFAGH------SLGEYA---ALASL----ADVMSIESLVEVVF 1787
Query: 624 H--SLAAYVDSQGHKSREKEIMYPALPT--GASYMDGQLLIFSETHVDVFNAESGDWLQT 679
+ + R M P AS+ L + V+ +G ++
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL----QYVVERVGKRTGWLVEI 1843
Query: 680 VN 681
VN
Sbjct: 1844 VN 1845
Score = 37.0 bits (85), Expect = 0.030
Identities = 77/522 (14%), Positives = 138/522 (26%), Gaps = 200/522 (38%)
Query: 2 SLLASKAGQEF-----RVSDEKDARSYLQALTTKTTQ-ELEYLK----H--ASSLGGPGV 49
L+ +F + + + Q L T+ E YL+ H A+ L
Sbjct: 59 ELVG-----KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 50 GTVPGVGGPGDKNW-------RDRRSQKLEKMELLNLQSSLNSEIQAKT---------Q- 92
T+ K R + +K S+L + Q
Sbjct: 114 TTLVKT-----KELIKNYITARIMAKRPFDKKS----NSALFRAVGEGNAQLVAIFGGQG 164
Query: 93 -----ISE--ELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLESG-DI 144
E +L +T L+ D ++ + L + + G +I
Sbjct: 165 NTDDYFEELRDLYQTYHVLVG------DL---IKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 145 ---LERPASQ--ISYLD---------------HF-------------LKESRHTGSVESE 171
LE P++ YL H+ L+ + S+
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 172 DGDIEDNRVPS---IASSRSNLSELTIDQMNNMLRH-----DRSSKHHQFITRTFTSPTK 223
+ + IA + S S + + R ++ T P+
Sbjct: 276 G-------LVTAVAIAETDSWESFF--VSVRKAITVLFFIGVRC---YEAYPNTSLPPSI 323
Query: 224 CNHCT-------SLMV---GLTRQGVVCDICGFACHLSCCDKVP------PSCPV---PP 264
S M+ LT++ V + HL +V V PP
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 265 D----------QTKRPLGIDPTRGIGTAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLY 314
+ K P G+D +R +P + R+ F
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSR-----------IPFSE-------RKLKFSNRF----- 420
Query: 315 DISPDRNALP--AVYVSLVL----DMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLM 368
LP + + S +L D+ ++D + V +A IP ++
Sbjct: 421 --------LPVASPFHSHLLVPASDLINKDLVKNNVS----FNAKDIQIP-VYDTFD--- 464
Query: 369 DPPG------TKNHTLMLADSDTEKT-KW--VVALSELHRIL 401
G + + + + D KW H IL
Sbjct: 465 ---GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH-IL 502
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 45.3 bits (107), Expect = 5e-06
Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 16/115 (13%)
Query: 284 EGYVKVPKTGGVKKGW-VRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVS 342
G++ + + K W F + D L YD +N V M + +
Sbjct: 8 SGWLL--RQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKV------HMPMDCINIR 59
Query: 343 GVRE-SDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSE 396
+E D K C+ +I K +L A+S + W L +
Sbjct: 60 TGQECRDTQPPDGKSKDCMLQIVC-----RDGKTISLC-AESTDDCLAWKFTLQD 108
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 48.1 bits (114), Expect = 8e-06
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 196 DQMNNMLRHDRSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDK 255
++N+ + ++ H F +F T C C L+ G QG C C + H C +
Sbjct: 504 MAISNIYPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR 563
Query: 256 VPP 258
VPP
Sbjct: 564 VPP 566
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 8e-06
Identities = 33/237 (13%), Positives = 74/237 (31%), Gaps = 78/237 (32%)
Query: 61 KNWRDRRSQKLEKMELLNLQSSLN----SEIQAK----------TQISE--------ELS 98
NW+ KL + ++SSLN +E + I ++
Sbjct: 345 DNWKHVNCDKLTTI----IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 99 KTRSELIA--------AQKEICDFRLKMESVSMDLRRKDSQLKELQSRL----------E 140
K+ ++ +K+ + + + S+ ++L+ K L + +
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 141 SGDILERPASQ-----ISY------------------LD-HFLKES-RHTGSVESEDGDI 175
S D++ Q I + LD FL++ RH + + G I
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 176 ED------NRVPSIASSRSNLSELTIDQMNNMLRHDRS---SKHHQFITRTFTSPTK 223
+ P I + L ++ + + + + SK+ + + +
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Score = 47.2 bits (111), Expect = 2e-05
Identities = 65/494 (13%), Positives = 149/494 (30%), Gaps = 121/494 (24%)
Query: 332 LDMRD-EDF--AVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKT 388
D +D +D ++ E D I +K + R+ +L+ + + +
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-EEMVQKFVEEVLRINY 91
Query: 389 KWVV-ALSELHR---------ILKRNNLPNHTVSTPK--IARVGDTKKIYQMDYIPKEQL 436
K+++ + R I +R+ L N K ++R+ K+ Q +
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 437 LVVL-----AGKQRYVQIARVGDTKKI-----YQMDYI------PEEQLLVVLAGKQRYV 480
V++ +GK V + K+ +++ ++ E +L +L ++
Sbjct: 152 NVLIDGVLGSGKT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML--QKLLY 207
Query: 481 RLVP--VRALDGDEVEWVKIPETKGCLSFTTGPLTHTRTQHCL-------------ALAV 525
++ P D ++I + L L ++CL A +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRL---LKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 526 KRQNSSQIILYEITR----------TKTRHKRLHEVILP-TLAQCIHIFSEGRLCVGYQS 574
+I+L TR T H L + T + + +
Sbjct: 265 S----CKILL--TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL---KYLD--- 312
Query: 575 GFSIYKFSQDNRPIPLIHQDNPL-VSLLTYSPVDALLAIELPRGEFLLVFHSLAAYVD-S 632
+ P + NP +S++ + L + +V+
Sbjct: 313 ------CRPQDLP-REVLTTNPRRLSIIA-----ESIRDGLATWDNWK-------HVNCD 353
Query: 633 QGHKSREK--EIMYPALPTGASYMDGQLLIFSETHVDVFNAESGDWLQTV--NIRRALPL 688
+ E ++ PA + L +F + L + ++ ++ +
Sbjct: 354 KLTTIIESSLNVLEPAE-YRKMFDR--LSVFPP-SAHI----PTILLSLIWFDVIKSDVM 405
Query: 689 DTRGSLC-FSLAN--DIPYVVYLANIHQRELINLMTGGDMRQPRPKRRFSMREGQRAPRA 745
L +SL + + +I+ + L + + S+ + P+
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-------SIVDHYNIPKT 458
Query: 746 VDTKKSSSPS-SSY 758
D+ P Y
Sbjct: 459 FDSDDLIPPYLDQY 472
Score = 46.0 bits (108), Expect = 5e-05
Identities = 90/765 (11%), Positives = 203/765 (26%), Gaps = 307/765 (40%)
Query: 16 DEKDARSYLQALTTKTTQELEYLKHASSLGGPGVGTVPGVGGPGDKN------W--RDRR 67
D KD + +++ +K +E++++ + + W ++
Sbjct: 34 DCKDVQDMPKSILSK--EEIDHI----------------IMSKDAVSGTLRLFWTLLSKQ 75
Query: 68 SQKLEKM--ELLN-----LQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMES 120
+ ++K E+L L S + +E + + ++ + R L + + +
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 121 VSMDLRRKDSQLKELQSRLESGDILERPASQI----------SYLDHFLKESRHTGSVES 170
+ LR+ L EL RPA + +++ V
Sbjct: 136 PYLKLRQA---LLEL-----------RPAKNVLIDGVLGSGKTWV---------ALDV-C 171
Query: 171 EDGDIE---DNRVPSIASSRSNLSELTIDQMNNMLRHDRSSKHHQFITRTFTSPTKCN-- 225
++ D ++ + N E ++ + L + + + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 226 ------------HCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCP--VPPDQTKRPL 271
+ L+V L ++ + + SC + T R
Sbjct: 231 QAELRRLLKSKPYENCLLV-LL------NV----QNAKAWNAFNLSCKILL----TTRFK 275
Query: 272 GIDPTRGIGTAYEGYVKV-PKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALP--AVYV 328
+ T + A ++ + + + V+ +L D P LP +
Sbjct: 276 QV--TDFLSAATTTHISLDHHSMTLTPDEVKSL-----LLKYL-DCRPQD--LPREVLTT 325
Query: 329 S-LVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEK 387
+ L + I S+ D T ++
Sbjct: 326 NPRRLSI----------------------------IAESIRDGLATWDNWKH-------- 349
Query: 388 TKWVVALSELHRILKR--NNLPNHTVSTPKIARVGDTKKIYQMDYIPKEQLLVVLAGKQR 445
V +L I++ N L P E ++
Sbjct: 350 ----VNCDKLTTIIESSLNVLE------------------------PAEY-------RKM 374
Query: 446 YVQIARVGDTKKIYQMD-YIPEEQLLVVLAGKQRYVRLVPVRALDGDEVEWVKIPETKGC 504
+ +++ ++ +IP LL ++ W + ++
Sbjct: 375 FDRLS-------VFPPSAHIP-TILLSLI---------------------WFDVIKSD-- 403
Query: 505 LSFTTGPLTHTRTQHCLALAVKRQNSSQIILYEI---TRTKTRHKR-LHEVILPTLAQCI 560
+ H +L K+ S I + I + K ++ LH I+
Sbjct: 404 ------VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH----- 452
Query: 561 HIFSEGRLCVGYQSGFSIYKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFL 620
Y F D+ P + D Y
Sbjct: 453 -----------YN---IPKTFDSDDLIPP--YLDQ-------Y----------------- 472
Query: 621 LVFHSLAAYVDSQGHKSREKEIMYPALPTGASYMDGQLLIFSETHVDVFNAESGDWLQTV 680
F+S + H + ++ +F +D F +L+
Sbjct: 473 --FYSHIGH-----H-------LKNIE------HPERMTLFRMVFLD-FR-----FLE-Q 505
Query: 681 NIRRA-LPLDTRGSLCFSLANDIPYVVYLANIH---QRELINLMT 721
IR + GS+ +L Y Y+ + +R + ++
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 43.9 bits (104), Expect = 1e-05
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 23/113 (20%)
Query: 284 EGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSG 343
GY+ ++ G KK W + V+ + L+ Y S D AL + + F V+
Sbjct: 11 SGYLY--RSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPL--------LGFTVTL 60
Query: 344 VRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSE 396
V++ + +F++ G + AD +W+ A E
Sbjct: 61 VKDEN-------SESKVFQLLH-----KGMVFYVFK-ADDAHSTQRWIDAFQE 100
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 43.9 bits (104), Expect = 1e-05
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 22/114 (19%)
Query: 284 EGY-VKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVS 342
G+ K + K W +++ V+ D LF Y + + L ++ + F V+
Sbjct: 14 AGWLFK--QASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPL--------LSFRVA 63
Query: 343 GVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSE 396
V+ SD F+ G + + A+S E+ W+ A+ E
Sbjct: 64 AVQPSD-----NISRKHTFKAEH-----AGVRTYFFS-AESPEEQEAWIQAMGE 106
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 43.7 bits (103), Expect = 2e-05
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 26/136 (19%)
Query: 280 GTAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFL--YDISPDRNALPAVYVSLVLDMRDE 337
G GY+ K + GW +F V+ + L + RN P + L
Sbjct: 7 GENVYGYLM--KYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQL------- 57
Query: 338 DFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397
VI + +D F + + + L A E+ WV L
Sbjct: 58 --------AGAVISPSDED-SHTFTVNA-----ASGEQYKLR-ATDAKERQHWVSRLQIC 102
Query: 398 HRILKRNNLPNHTVST 413
+ N++ +
Sbjct: 103 TQHHTEAIGKNNSGPS 118
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 43.8 bits (103), Expect = 2e-05
Identities = 15/114 (13%), Positives = 33/114 (28%), Gaps = 14/114 (12%)
Query: 284 EGYVKVPKTGGVKKGWVRQ-FVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVS 342
G++ + + + W R F + D L Y ++ V + +
Sbjct: 11 GGWLW--RQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQ 68
Query: 343 GVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSE 396
V+ + + + + L A++ + W AL E
Sbjct: 69 DVQPPE-----GRSRDGLLTVNL-----REGSRLHLC-AETRDDAIAWKTALME 111
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 43.6 bits (103), Expect = 2e-05
Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 16/114 (14%)
Query: 284 EGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSG 343
G++K K + K W +++ V+ +L+ Y D +Y + G
Sbjct: 11 MGWLK--KQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMY-------------LPG 55
Query: 344 VRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLML-ADSDTEKTKWVVALSE 396
++ ++ +F I + D + +L A S E +WV L
Sbjct: 56 CTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRR 109
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 42.7 bits (100), Expect = 5e-05
Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 8/115 (6%)
Query: 284 EGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSG 343
G+++ + K + + + V+ L + + DR +SL L + V+
Sbjct: 9 SGFLE--RRSKFLKSYSKGYYVLTPNFLHEFK-TADRKKDLVPVMSLAL----SECTVTE 61
Query: 344 VRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLML-ADSDTEKTKWVVALSEL 397
+ + + + + + H + ADS W L L
Sbjct: 62 HSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKIL 116
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 42.3 bits (99), Expect = 7e-05
Identities = 15/122 (12%), Positives = 37/122 (30%), Gaps = 11/122 (9%)
Query: 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNA--------LPAVYVSLVLDM 334
G++ + + W R++ V+ + + D L +
Sbjct: 7 ERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPA 66
Query: 335 RDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVAL 394
E + ++I + + + D + L AD+ E+ W+ L
Sbjct: 67 NREF--CARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLS-ADTKEERDLWMQKL 123
Query: 395 SE 396
++
Sbjct: 124 NQ 125
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 43.2 bits (101), Expect = 8e-05
Identities = 9/89 (10%), Positives = 33/89 (37%), Gaps = 26/89 (29%)
Query: 61 KNWRDRRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIA-AQKEICDFRLKME 119
+ WR+ + ++L++++ E A+K++ ++ +
Sbjct: 88 RKWREEQRKRLQELD-------------------AASKVMEQEWREKAKKDLEEWNQRQS 128
Query: 120 SVSMDLRRKDSQLKE---LQSRLESGDIL 145
++ + ++++ + Q DI+
Sbjct: 129 E-QVEKNKINNRIADKAFYQQP--DADII 154
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 41.3 bits (97), Expect = 1e-04
Identities = 22/123 (17%), Positives = 37/123 (30%), Gaps = 24/123 (19%)
Query: 284 EGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSG 343
EG + K GW ++ V+ + L YD D + +
Sbjct: 2 EGVLY--KWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKM------------- 46
Query: 344 VRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILKR 403
I D + PG ++ + A + E+ +W+VAL L
Sbjct: 47 --AVCEIKVHSAD-NTRMELII-----PGEQHFYMK-AVNAAERQRWLVALGSSKASLTD 97
Query: 404 NNL 406
L
Sbjct: 98 TRL 100
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 41.3 bits (97), Expect = 1e-04
Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 22/131 (16%)
Query: 267 TKRPLGIDPTRGIGTAYEGY-VKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPA 325
KR I G+ K + K W +++ V+ D LF Y + L +
Sbjct: 7 GKRSNSIKRNPNAPVVRRGWLYK--QDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGS 64
Query: 326 VYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDT 385
+ + F ++ + D + F+ P + + D+
Sbjct: 65 ILL--------PSFQIALLTSED-----HINRKYAFKAAH-----PNMRTYYFC-TDTGK 105
Query: 386 EKTKWVVALSE 396
E W+ A+ +
Sbjct: 106 EMELWMKAMLD 116
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 40.5 bits (95), Expect = 2e-04
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 27/114 (23%)
Query: 284 EGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSG 343
G + K GW ++VV+ + L Y + + L AV
Sbjct: 4 CGVLS--KWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICL-------SKAVIT 54
Query: 344 VRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLML-ADSDTEKTKWVVALSE 396
+ D C F I+ + + L A + +W+ A+ +
Sbjct: 55 PHDFD---------ECRFDISVN--------DSVWYLRAQDPDHRQQWIDAIEQ 91
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 40.5 bits (95), Expect = 2e-04
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 21/115 (18%)
Query: 284 EGYV--KVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAV 341
EG + K + K+ W FVV+ + L+ Y D L +V +
Sbjct: 3 EGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNM--------GGEQC 54
Query: 342 SGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSE 396
G R ++ D P F++ L A+S+ E +W+ L +
Sbjct: 55 GGCRRAN-----TTDRPHAFQVIL-----SDRPCLELS-AESEAEMAEWMQHLCQ 98
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 40.7 bits (95), Expect = 2e-04
Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 18/127 (14%)
Query: 284 EGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNA-----LPAVYVSLVLDMRDED 338
EG++ K GG K W R++ ++ D L+ ++ + D+ L + + VLD +
Sbjct: 8 EGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLD-PRKP 64
Query: 339 FAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHT-LMLADSDTEKTKWVVALSEL 397
++ + + K T + + + A S EK +W+ ++
Sbjct: 65 NC------FELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIK-- 116
Query: 398 HRILKRN 404
+ R+
Sbjct: 117 -ASISRD 122
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 40.7 bits (95), Expect = 2e-04
Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 19/128 (14%)
Query: 275 PTRGIGTAYEGYV--KVPKTGGVKK----GWVRQFVVVCDFKLFLYDISPDRNALPAVYV 328
G G +EGYV K KK W + ++ ++ Y + P +
Sbjct: 2 SGTGAGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTF 61
Query: 329 SLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKT 388
D A + TKK + R+ + L+ A DTE +
Sbjct: 62 R-GEPSYDLQNAAIEIASDY----TKK--KHVLRVKLA------NGALFLLQAHDDTEMS 108
Query: 389 KWVVALSE 396
+WV +L
Sbjct: 109 QWVTSLKA 116
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 43.1 bits (100), Expect = 3e-04
Identities = 42/323 (13%), Positives = 82/323 (25%), Gaps = 50/323 (15%)
Query: 75 ELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKE 134
EL + + L++++ + +++ + + KEI + + S D ++
Sbjct: 95 ELSSCHAVLSTQLA--DAMMFPITQFKERDL---KEILTLKEVFQIASNDHDAAINRYSR 149
Query: 135 LQSRLESGDILERPASQISYLDHFLKESRHTGSVESEDGDIEDNRVPSIASSRSNLSELT 194
L + E+ + + SR L+ L
Sbjct: 150 LSKKRENDKVKYEVTED-------VYTSRKKQHQTMMH-------------YFCALNTLQ 189
Query: 195 IDQMNNMLRHDRSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCD 254
+ +L Q S + + + +
Sbjct: 190 YKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQ 249
Query: 255 KVPPSCPVP--PDQTKRPLGIDPTRGIGTAYEGYV-KVPKTGGVKKGWVRQFVVVCDFKL 311
+ P T GY+ KTG V W RQF L
Sbjct: 250 TIEDLEVASDPLYVPDPDPTKFPVNRNLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNL 309
Query: 312 FLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPP 371
L + V+ +D F+IT+
Sbjct: 310 MSQARGDVAGGL-----------------AMDIDNCSVMAVDCEDRRYCFQITS----FD 348
Query: 372 GTKNHTLMLADSDTEKTKWVVAL 394
G K+ L A+S + +W+ +
Sbjct: 349 GKKSSILQ-AESKKDHEEWICTI 370
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 40.3 bits (94), Expect = 3e-04
Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 14/117 (11%)
Query: 284 EGYVKVPKT--GG--VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDF 339
G + + K GG ++K W +VV+ L Y P+ +
Sbjct: 15 SGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFY--REPPPTAPSSGWGPAGSRPESSV 72
Query: 340 AVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSE 396
+ G + H + + + I T + L+ +D +TE W AL
Sbjct: 73 DLRGAALAHGRHLSSR--RNVLHIRTI------PGHEFLLQSDHETELRAWHRALRT 121
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 39.7 bits (93), Expect = 5e-04
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 22/114 (19%)
Query: 284 EGY-VKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVS 342
G+ K + + W R++ V+ LF Y S + + L +V +
Sbjct: 14 RGWLHK--QDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVL-------------LP 58
Query: 343 GVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSE 396
+ F PG + + L AD+ + W+ AL
Sbjct: 59 SYNIRPDGPGAPRGRRFTFTAEH-----PGMRTYVLA-ADTLEDLRGWLRALGR 106
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 39.2 bits (91), Expect = 7e-04
Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 21/128 (16%)
Query: 275 PTRGIGTAYEGYV--KVPKTGGVKK----GWVRQFVVVCDFKLFLYDISPDRNALPAVYV 328
+ G EG + K KK W + V+ L Y + +A +
Sbjct: 2 SSGSSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHG 61
Query: 329 SLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKT 388
+ + + A V K+ +F++ L A + E +
Sbjct: 62 EVPVSLAR---AQGSVAFDY----RKR--KHVFKLGLQ------DGKEYLFQAKDEAEMS 106
Query: 389 KWVVALSE 396
W+ ++
Sbjct: 107 SWLRVVNA 114
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 39.1 bits (91), Expect = 8e-04
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 20/118 (16%)
Query: 284 EGYVKVPKTGGVKKGW-VRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVS 342
+GY+ K G +K W VR+FV+ D Y P SL VS
Sbjct: 21 QGYLA--KQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSL------RGSLVS 72
Query: 343 GVRESDVIHATKKDI-PCIFRITTSLMDPPGTKNHT--LMLADSDTEKTKWVVALSEL 397
+ ++ V K ++ +F++ T + T + A S E+ +W+ A+ +L
Sbjct: 73 ALEDNGVPTGVKGNVQGNLFKVITK--------DDTHYYIQASSKAERAEWIEAIKKL 122
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 38.7 bits (90), Expect = 0.001
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 31/119 (26%)
Query: 280 GTAYEGY-VKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDED 338
G+ +GY +K K+ G++K W R+ V + L + +
Sbjct: 9 GSEKKGYLLK--KSDGIRKVWQRRKCSVKNGILTISH-----------------ATSNRQ 49
Query: 339 FAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLML-ADSDTEKTKWVVALSE 396
A + V + F + + N T A+ + + W+ L+
Sbjct: 50 PAKLNLLTCQVKPNAED--KKSFDLIS--------HNRTYHFQAEDEQDYVAWISVLTN 98
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 38.8 bits (90), Expect = 0.001
Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 18/121 (14%)
Query: 284 EGYVKVPKTGGVKKGW-VRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVS 342
EG++ K G K W R F++ D Y P D R+
Sbjct: 11 EGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDV-----------DQREAPLNNF 57
Query: 343 GVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILK 402
V + ++ T++ P F I + T ++ E+ +W A+ + LK
Sbjct: 58 SVAQCQLM-KTERPRPNTFIIRC--LQWTTVIERTFH-VETPEEREEWTTAIQTVADGLK 113
Query: 403 R 403
+
Sbjct: 114 K 114
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 37.8 bits (88), Expect = 0.002
Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 26/137 (18%)
Query: 268 KRPLGIDPTRGIGTAYEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVY 327
+ + PT EGY+ K GG+ K W ++ + +L + + +
Sbjct: 5 RTEDDLVPTAPSLGTKEGYLT--KQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILD 62
Query: 328 VSLVLDMRDEDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLML-ADSDTE 386
++ S V ++ F + T L A + E
Sbjct: 63 LTEC---------------SAVQFDYSQERVNCFCLVFP--------FRTFYLCAKTGVE 99
Query: 387 KTKWVVALSELHRILKR 403
+W+ L +++
Sbjct: 100 ADEWIKILRWKLSQIRK 116
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 37.2 bits (86), Expect = 0.003
Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 21/118 (17%)
Query: 284 EGYV---KVPKTGGVK---KGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDE 337
EG++ + K + W + V+ + ++ Y + + + + + +++
Sbjct: 2 EGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKE- 60
Query: 338 DFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALS 395
A+ V KK +F++ S N L A D E W+ A+S
Sbjct: 61 --AICEVALDY----KKK--KHVFKLRLS------DGNEYLFQAKDDEEMNTWIQAIS 104
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 37.5 bits (87), Expect = 0.003
Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 12/103 (11%)
Query: 296 KKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVIHATKK 355
KK W + V+ L + D A + ++ V +R + + A K
Sbjct: 28 KKHWSASWTVLEGGVLTFF---KDSKTSAAGGLRQPSKFSTPEYTVE-LRGATLSWAPKD 83
Query: 356 DI--PCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSE 396
+ + + + L+ DS+ + W A+++
Sbjct: 84 KSSRKNVLELRSR------DGSEYLIQHDSEAIISTWHKAIAQ 120
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 38.2 bits (88), Expect = 0.003
Identities = 8/113 (7%), Positives = 31/113 (27%), Gaps = 25/113 (22%)
Query: 283 YEGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVS 342
+EG++ + + + + LF Y + + + + + +++
Sbjct: 20 FEGFLL--IKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQN---- 73
Query: 343 GVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLML-ADSDTEKTKWVVAL 394
+ + F + + L ++ +W +
Sbjct: 74 ----------STEKNCAKFTLV--------LPKEEVQLKTENTESGEEWRGFI 108
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 37.6 bits (86), Expect = 0.003
Identities = 10/64 (15%), Positives = 16/64 (25%)
Query: 201 MLRHDRSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSC 260
+ +C C + L VVC+ C C + +
Sbjct: 35 RIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNR 94
Query: 261 PVPP 264
P P
Sbjct: 95 PHPV 98
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 35.6 bits (82), Expect = 0.003
Identities = 11/44 (25%), Positives = 15/44 (34%)
Query: 223 KCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPPDQ 266
C C + V+CD CG H C S + D+
Sbjct: 8 VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDE 51
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 37.3 bits (86), Expect = 0.004
Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 17/112 (15%)
Query: 284 EGYVKVPK-TGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVS 342
+ ++++ + KG+ + +VV + L Y + P ++L + V
Sbjct: 12 KDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNL------KGCEVV 65
Query: 343 GVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVAL 394
DV + +K F I + P G L + + +W+
Sbjct: 66 ----PDVNVSGQK-----FCIKLLVPSPEGMSEIYLR-CQDEQQYARWMAGC 107
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 37.0 bits (86), Expect = 0.004
Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 24/128 (18%)
Query: 284 EGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSG 343
EGY+ K G V W +VV+ + + Y D + + + + ++
Sbjct: 8 EGYLV--KKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPL--------KGSTLTS 57
Query: 344 VRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLML-ADSDTEKTKWVVALSELHRILK 402
+ K+ +F+ITT+ K A E+ WV +++ + ++
Sbjct: 58 PCQDF----GKR--MFVFKITTT-------KQQDHFFQAAFLEERDAWVRDINKAIKCIE 104
Query: 403 RNNLPNHT 410
+H
Sbjct: 105 GLEHHHHH 112
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK,
molecular replacement, transferase; 1.60A {Homo sapiens}
Length = 81
Score = 36.0 bits (82), Expect = 0.004
Identities = 11/66 (16%), Positives = 31/66 (46%)
Query: 72 EKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQ 131
++ L LQ +L E+ + +S E+ R++ ++ + + + +R+ +
Sbjct: 8 AEVTLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQER 67
Query: 132 LKELQS 137
++ LQ+
Sbjct: 68 MELLQA 73
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 36.6 bits (85), Expect = 0.004
Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 23/119 (19%)
Query: 284 EGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSG 343
+GY+ K G +K W ++ V+ + Y ++ + + DE+ V
Sbjct: 11 QGYMM--KKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILL-------DENCCVES 61
Query: 344 VRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRILK 402
+ + D K C+F + K + A +K +W+ A+ +LK
Sbjct: 62 LPDKD-----GK--KCLFLVKCF------DKTFEIS-ASDKKKKQEWIQAIHSTIHLLK 106
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 36.7 bits (85), Expect = 0.006
Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 23/120 (19%)
Query: 284 EGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSG 343
GY K G V K W R++ + + + + ++ P + L E V
Sbjct: 17 AGYCV--KQGAVMKNWKRRYFQLDENTIGYFKSELEKE--PLRVIPL-----KEVHKVQE 67
Query: 344 VRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLML-ADSDTEKTKWVVALSELHRILK 402
++SD +F I T+ + T + ADS E W+ A+S +
Sbjct: 68 CKQSD-----IMMRDNLFEIVTT--------SRTFYVQADSPEEMHSWIKAVSGAIVAQR 114
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 36.6 bits (84), Expect = 0.007
Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 14/119 (11%)
Query: 284 EGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDED----- 338
++K+ G K W + + V+ L +Y + + V ++ +
Sbjct: 11 ADWLKI---RGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERPSKKDGF 67
Query: 339 -FAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSE 396
F + E + + IT L ++ ++ A S+++ W+ AL
Sbjct: 68 CFKLFHPLEQSIWAVKGPKGEAVGSITQPLP-----SSYLIIRATSESDGRCWMDALEL 121
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 36.6 bits (84), Expect = 0.011
Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 69 QKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRK 128
+ +K + LQ+ L +E + + SE + ++ + + Q+E+ + +E V + +
Sbjct: 65 SQTDK-DYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEA 123
Query: 129 DSQLKELQSRLESGDI 144
L + + +I
Sbjct: 124 QDMLNHSEKEKNNLEI 139
Score = 30.5 bits (68), Expect = 1.2
Identities = 10/72 (13%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 70 KLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKD 129
+L+K +L L +E ++ + ++ + + + + + + + D
Sbjct: 10 QLQK-QLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTD 68
Query: 130 SQLKELQSRLES 141
+LQ+ LE+
Sbjct: 69 KDYYQLQAILEA 80
Score = 29.3 bits (65), Expect = 2.7
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 67 RSQKLEKM--ELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMD 124
+ +L K E+ S L S + + + L ++S+ K+ + +E+ D
Sbjct: 28 TAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQT---DKDYYQLQAILEAERRD 84
Query: 125 LRRKDSQLKELQSRLES 141
+ +LQ+R+ S
Sbjct: 85 RGHDSEMIGDLQARITS 101
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 35.7 bits (82), Expect = 0.012
Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 22/118 (18%)
Query: 280 GTAYEGY-VKVPKTGGVKKGWVRQFVVVCDFKLFLYDISP--DRNALPAVYVSLVLDMRD 336
G + GY V K W ++F V+ + + + ++ A P + L
Sbjct: 7 GMKHSGYLWA--IGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQL------ 58
Query: 337 EDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVAL 394
+ + V + + F +D + ++ WV A+
Sbjct: 59 DGYTVDYTDPQPGLEGGR----AFFNAVKE------GDTVIFA-SDDEQDRILWVQAM 105
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 35.4 bits (82), Expect = 0.012
Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 24/120 (20%)
Query: 284 EGYVKVPKTGGVKKGW-VRQFVVVCD-FKLFLYDISPDRNALPAVYVSLVLDMRDEDFAV 341
+G + K G +K W VR+F++ D L YD + + L A+++
Sbjct: 10 QGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLR----------GC 57
Query: 342 SGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHT--LMLADSDTEKTKWVVALSELHR 399
+ K + +F I T+ + + A + E+T+W+ A+ R
Sbjct: 58 VVTSVESNSNGRKSEEENLFEIITA--------DEVHYFLQAATPKERTEWIKAIQMASR 109
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 36.1 bits (83), Expect = 0.013
Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 20/128 (15%)
Query: 284 EGYV--KVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAV 341
GY+ + + W +++ + + Y D+ + + + V
Sbjct: 20 AGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAI--------DGYDV 71
Query: 342 SGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHRIL 401
KK C F I P + + A S + +WV L + + L
Sbjct: 72 RMNNTLRKDG--KK--DCCFEICA-----PDKRIYQFT-AASPKDAEEWVQQLKFILQDL 121
Query: 402 KRNNLPNH 409
+ +P
Sbjct: 122 GSDVIPED 129
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 37.3 bits (86), Expect = 0.013
Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 6/109 (5%)
Query: 61 KNWRDRRSQKLEKMELLN-----LQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFR 115
K R + EKME+ + + +++ +L S+L A++
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 116 LKMESVSMDLRRKDSQLKELQSRLE-SGDILERPASQISYLDHFLKESR 163
K + +++ + LK L+++ E ++ +I L LKE+
Sbjct: 188 GKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 236
Score = 35.0 bits (80), Expect = 0.064
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 64 RDRRSQKLEKME--LLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESV 121
+ ++KL +E L + ++ EE+ + L + + + + K +
Sbjct: 162 YEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKY 221
Query: 122 SMDLRRKDSQLKELQSRLE 140
+++ +LKE ++R E
Sbjct: 222 EEEIKVLSDKLKEAETRAE 240
Score = 34.2 bits (78), Expect = 0.14
Identities = 10/74 (13%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 69 QKLEKM--ELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLR 126
+K++ + + N + K + + EL++ QK++ +++ S L+
Sbjct: 6 KKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALK 65
Query: 127 RKDSQLKELQSRLE 140
+L+ + +
Sbjct: 66 DAQEKLELAEKKAT 79
Score = 30.8 bits (69), Expect = 1.6
Identities = 13/74 (17%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 68 SQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRR 127
SQK +K E L+ +++ +E ++ ++L +K I D ++ + + +
Sbjct: 215 SQKEDKYE--EEIKVLSDKLKEAETRAEFAERSVTKL---EKSIDDLEDELYAQKLKYKA 269
Query: 128 KDSQLKELQSRLES 141
+L + + S
Sbjct: 270 ISEELDHALNDMTS 283
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 35.4 bits (81), Expect = 0.017
Identities = 23/118 (19%), Positives = 31/118 (26%), Gaps = 17/118 (14%)
Query: 284 EGYV--KVPKTGGVK---KGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDED 338
EG + K G K W R +VV+ L Y R Y S
Sbjct: 4 EGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKK---- 59
Query: 339 FAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSE 396
++ G D IF++ P N S W L +
Sbjct: 60 VSIVGWMVQLPDDPEHPD---IFQLNN-----PDKGNVYKFQTGSRFHAILWHKHLDD 109
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 37.5 bits (87), Expect = 0.018
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 65 DRRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMD 124
++ +KLE E +L + ++ +L+K EL AA + D + +
Sbjct: 1059 EKIKRKLEG-ESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117
Query: 125 LRRKDSQLKELQSRLES 141
+R +S + +LQ LES
Sbjct: 1118 IRELESHISDLQEDLES 1134
Score = 36.4 bits (84), Expect = 0.044
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 69 QKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRK 128
K E+ EL + L E K +++ + S + Q+++ + R
Sbjct: 1091 AKKEE-ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDL 1149
Query: 129 DSQLKELQSRLES 141
+L+ L++ LE
Sbjct: 1150 SEELEALKTELED 1162
Score = 34.4 bits (79), Expect = 0.18
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 68 SQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDL-- 125
+ +K L L S I + E+L ++ A+K+ D ++E++ +L
Sbjct: 1106 DETSQKNNALKKIRELESHIS---DLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162
Query: 126 -RRKDSQLKELQSRLES 141
+ +EL+
Sbjct: 1163 TLDTTATQQELRGSDYK 1179
Score = 33.7 bits (77), Expect = 0.30
Identities = 10/75 (13%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 67 RSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLR 126
+ Q+LE++ L +++ + E + Q+ E K + +++ ++++ + + + ++
Sbjct: 921 KKQELEEI-LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKV 979
Query: 127 RKDSQLKELQSRLES 141
D ++K+++ +
Sbjct: 980 TADGKIKKMEDDILI 994
Score = 32.9 bits (75), Expect = 0.53
Identities = 24/147 (16%), Positives = 59/147 (40%), Gaps = 5/147 (3%)
Query: 65 DRRSQKL--EKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVS 122
+ ++ KL E+ L S L + + + + ++ L+K +++ + E+ K E
Sbjct: 996 EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR 1055
Query: 123 MDLRRKDSQLKELQSRLESGDILERPASQISYLDHFLKESRHTGSVESEDGDIEDNRVPS 182
+L + +L+ S L + + +QI+ L L + + E ++ +
Sbjct: 1056 QELEKIKRKLEGESSDLH--EQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNN 1113
Query: 183 IASSRSNLSELTIDQMNNMLRHDRSSK 209
L E I + L +++++
Sbjct: 1114 ALKKIREL-ESHISDLQEDLESEKAAR 1139
Score = 31.3 bits (71), Expect = 1.7
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 64 RDRRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSM 123
R+ +LEK+ + +I + +L+K R L ++ + E +
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 124 DLRRK----DSQLKELQSRLES 141
+L + +S + EL+ RL+
Sbjct: 1029 NLTKLKNKHESMISELEVRLKK 1050
Score = 29.0 bits (65), Expect = 6.8
Identities = 14/78 (17%), Positives = 40/78 (51%)
Query: 64 RDRRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSM 123
+ + + + +L ++ L ++QA+T++ E + R L A ++E+ + +ME+
Sbjct: 878 AELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIE 937
Query: 124 DLRRKDSQLKELQSRLES 141
+ + QL+ + +++
Sbjct: 938 EEEERSQQLQAEKKKMQQ 955
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 34.7 bits (80), Expect = 0.031
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 24/123 (19%)
Query: 284 EGYVKVPKTGGVKKGW-VRQFVVVCD-FKLFLYDISPDRNALPAVYVSLVLDMRDEDFAV 341
+G + K G +K W VR+F++ D L YD + + L A+++
Sbjct: 21 QGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLR----------GC 68
Query: 342 SGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHT--LMLADSDTEKTKWVVALSELHR 399
+ K + +F I T+ + + A + E+T+W+ A+ R
Sbjct: 69 VVTSVESNSNGRKSEEENLFEIITA--------DEVHYFLQAATPKERTEWIKAIQMASR 120
Query: 400 ILK 402
K
Sbjct: 121 TGK 123
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 33.7 bits (77), Expect = 0.042
Identities = 23/111 (20%), Positives = 34/111 (30%), Gaps = 25/111 (22%)
Query: 284 EGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSG 343
Y+ V V W ++ V D L Y +R+ + +SL
Sbjct: 11 SSYLNV----LVNSQWKSRWCSVRDNHLHFYQ-DRNRSKVAQQPLSL------------- 52
Query: 344 VRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVAL 394
+V+ D FRI G + L A S E W+ L
Sbjct: 53 -VGCEVVPDPSPDHLYSFRILH-----KGEELAKLE-AKSSEEMGHWLGLL 96
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 34.2 bits (78), Expect = 0.046
Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 17/115 (14%)
Query: 284 EGYVKVPKTGGVKKGWVRQFVVVCDFK--LFLYDISPDRNALPAVYVSLVLDMRDEDFAV 341
G++ + + ++R++ ++ L Y +P A+ A V +
Sbjct: 18 CGFLDI-EDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSL-------QLT 69
Query: 342 SGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSE 396
+ S K P F I ++ + L A+ + WV AL++
Sbjct: 70 YISKVSIATPKQKPKTPFCFVINA------LSQRYFLQ-ANDQKDLKDWVEALNQ 117
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 33.1 bits (75), Expect = 0.046
Identities = 10/35 (28%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 224 CNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPP 258
C C + V Q V C C H C P
Sbjct: 19 CVVCRQMTVASGNQLVECQECHNLYHQDCHK--PQ 51
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 34.8 bits (79), Expect = 0.048
Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 20/107 (18%)
Query: 291 KTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVI 350
+ GG + W + +VV+ L+LY ++ + ++ + + S+
Sbjct: 21 RVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNA-----CLIDISYSE-- 73
Query: 351 HATKKDIPCIFRITTSLMDPPGTKNHT-LMLADSDTEKTKWVVALSE 396
TK+ +FR+TTS + L A+ + W+ + E
Sbjct: 74 --TKR--KNVFRLTTS--------DCECLFQAEDRDDMLAWIKTIQE 108
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 35.7 bits (82), Expect = 0.057
Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 4/82 (4%)
Query: 187 RSNLSELTIDQMNNMLRHDRSSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGF 246
++ + R S T C +C LT + C CG
Sbjct: 341 KAQALAAFHHSVEIRERLGVSLGERPPTLVPVTHVMMCMNCGC-DFSLTLRRHHCHACGK 399
Query: 247 ACHLSCCDKVPPSCPVPPDQTK 268
+C P+ + +
Sbjct: 400 IVCRNCSRN---KYPLKYLKDR 418
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 112
Score = 33.0 bits (75), Expect = 0.088
Identities = 15/116 (12%), Positives = 36/116 (31%), Gaps = 28/116 (24%)
Query: 285 GYVKVPKTGGVKKGWVRQFVVVCD---FKLFLYDISPDRNALPAVYVSLVLDMRDEDFAV 341
G +++ ++G + W + + L L S D + + +
Sbjct: 12 GPLRLSESG---ETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLP--------SCKL 60
Query: 342 SGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLML-ADSDTEKTKWVVALSE 396
S + + D ++++ + L A S + +W+ LS
Sbjct: 61 SVPDPEE-----RLDSGHVWKLQW--------AKQSWYLSASSAELQQQWLETLST 103
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 33.3 bits (75), Expect = 0.090
Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 12/118 (10%)
Query: 284 EGYVKVPKTGGVKKGWVRQFVVVCDFKLFLYDISPD-------RNALPAVYVSLVLDMRD 336
+ ++ + K W +++V + LY S + + + ++ + +
Sbjct: 7 QSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKR 66
Query: 337 EDFAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVAL 394
A+S S + ++ G H A S E+ WV A+
Sbjct: 67 PPRAISAFGPS---ASGSAGQAEEENFEFLIVSSTGQTWH--FEAASFEERDAWVQAI 119
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module,
epigenetic regulation, LI binding protein complex; 1.41A
{Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A
2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Length = 70
Score = 31.3 bits (71), Expect = 0.13
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 239 VVCDICGFACHLSCCDKVPPSCPVPPD 265
++CD C A H+ C D PP VP +
Sbjct: 34 LMCDECDMAFHIYCLD--PPLSSVPSE 58
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 32.4 bits (74), Expect = 0.15
Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 20/114 (17%)
Query: 284 EGYV--KVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAV 341
+GY+ K W +++ VV + Y + +
Sbjct: 6 QGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIK----------GY 55
Query: 342 SGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALS 395
S + +KK F +T+ + + A S E WV +S
Sbjct: 56 SVRMAPHLRRDSKK--ESCFELTS-----QDRRTYEFT-ATSPAEARDWVDQIS 101
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 32.8 bits (74), Expect = 0.18
Identities = 18/131 (13%), Positives = 35/131 (26%), Gaps = 20/131 (15%)
Query: 284 EGYV---KVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFA 340
E + K + + V+ L Y+ ++ + +
Sbjct: 18 EEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYE-GRAEKKYRKGFIDV-----SKIKC 71
Query: 341 VSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLML-ADSDTEKTKWVVALSELHR 399
V V+ D F++ +TL + A S + WV L E +
Sbjct: 72 VEIVKNDD--GVIPCQNKYPFQVVHD--------ANTLYIFAPSPQSRDLWVKKLKEEIK 121
Query: 400 ILKRNNLPNHT 410
+ H
Sbjct: 122 NNNNIMIKYHP 132
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 32.0 bits (73), Expect = 0.18
Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 21/116 (18%)
Query: 283 YEGYVKVPKTGGVKKGW-VRQFVV-VCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFA 340
YEG + K G K W R FV+ +L YD D + ++ V +
Sbjct: 10 YEGILY--KKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPT 67
Query: 341 VSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHT-LMLADSDTEKTKWVVALS 395
+ + D F + T+ A +WV +
Sbjct: 68 IGAPK--------TVDEKAFFDVKTT--------RRVYNFCAQDVPSAQQWVDRIQ 107
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation,
UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo
sapiens}
Length = 77
Score = 31.4 bits (71), Expect = 0.18
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 239 VVCDICGFACHLSCCDKVPPSCPVPPD 265
++CD C A H+ C D PP VP +
Sbjct: 42 LMCDECDMAFHIYCLD--PPLSSVPSE 66
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 33.6 bits (76), Expect = 0.19
Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 29/119 (24%)
Query: 168 VESEDGDIEDNRVPSIASSRSNLSELTIDQMNNMLRHDRS----SKHHQFITRT------ 217
++SE G + ++ ++ + +L+ + T
Sbjct: 109 IDSETGFASSTNILNLVDQLKG-KKMRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILE 167
Query: 218 ---------FTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDK-----VPPSCPV 262
+ CN C SL++ QG C+ CG HL C K P CP
Sbjct: 168 MEQYIRETYPDAVKICNICHSLLI----QGQSCETCGIRMHLPCVAKYFQSNAEPRCPH 222
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 31.6 bits (72), Expect = 0.27
Identities = 15/134 (11%), Positives = 39/134 (29%), Gaps = 33/134 (24%)
Query: 284 EGYVKVPKTGG-VKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVS 342
G++ K K+ + +++V + Y+ +++
Sbjct: 11 SGWLD--KLSPQGKRMFQKRWVKFDGLSISYYN-------------------NEKEMYSK 49
Query: 343 GVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLML-ADSDTEKTKWVVALSELHRIL 401
G+ I + F + T+ T + + + E+ W+ L +
Sbjct: 50 GIIPLSAISTVRVQGDNKFEVVTT--------QRTFVFRVEKEEERNDWISILLNA--LK 99
Query: 402 KRNNLPNHTVSTPK 415
++ S P
Sbjct: 100 SQSLTSQSQASGPS 113
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 32.8 bits (74), Expect = 0.27
Identities = 16/118 (13%), Positives = 34/118 (28%), Gaps = 20/118 (16%)
Query: 284 EGYV--KVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAV 341
GY+ + + W +++ + + Y D+ +
Sbjct: 109 AGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAID----------GY 158
Query: 342 SGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399
+ + KK C F I P + + A S + +WV L + +
Sbjct: 159 DVRMNNTLRKDGKK--DCCFEICA-----PDKRIYQFT-AASPKDAEEWVQQLKFILQ 208
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain
binding, HIP1 coiled-coil domain, endocytosis, clathrin
SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Length = 107
Score = 31.4 bits (70), Expect = 0.32
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 72 EKMELLNLQSSLNSEIQAKTQ-ISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDS 130
EK EL + ++ + Q KTQ E L + EL +Q+E+ + +E+ + +
Sbjct: 30 EKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAA 89
Query: 131 QLKELQSRLES 141
+ EL+ +S
Sbjct: 90 EFAELEKERDS 100
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 32.2 bits (72), Expect = 0.35
Identities = 11/117 (9%), Positives = 32/117 (27%), Gaps = 8/117 (6%)
Query: 291 KTGGVKKGWVRQFVVVCDFKLFLYDISPDRNA-------LPAVYVSLVLDMRDEDFAVSG 343
K + + ++ KL Y+ +R + ++ V + E
Sbjct: 16 KKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPE 75
Query: 344 VRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLML-ADSDTEKTKWVVALSELHR 399
+ + + L + + ++ + +W+ L + R
Sbjct: 76 RQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIR 132
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 32.2 bits (72), Expect = 0.47
Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 17/106 (16%)
Query: 291 KTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRESDVI 350
++ W +V + LF Y+ + V S V
Sbjct: 31 VESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVW----------VENSIVQ 80
Query: 351 HATKKDI-PCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALS 395
+ +F ++ S + L S TE W+ A+
Sbjct: 81 AVPEHPKKDFVFCLSNS------LGDAFLFQTTSQTELENWITAIH 120
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain,
-structure, transcription; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 88
Score = 30.3 bits (68), Expect = 0.48
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 10/47 (21%)
Query: 241 CDICGFACHLSCCD----KVP------PSCPVPPDQTKRPLGIDPTR 277
C+ C F HL C VP C V PD + + + +
Sbjct: 40 CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDVDLQACK 86
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 32.8 bits (75), Expect = 0.51
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 69 QKLEKME--LLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLR 126
+KL L + + + EE++K R EL Q E + +
Sbjct: 963 EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022
Query: 127 RKDSQLKELQSRLES 141
+ S+LKE + L++
Sbjct: 1023 QLVSELKEQNTLLKT 1037
Score = 32.8 bits (75), Expect = 0.57
Identities = 11/81 (13%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 66 RRSQKLEKM------ELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKME 119
R+ + K ++ NL+ + ++E + E L + E A + + ++
Sbjct: 935 RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIA 994
Query: 120 SVSMDLRRKDSQLKELQSRLE 140
+ +L + ++ K ++ +
Sbjct: 995 KLRKELHQTQTEKKTIEEWAD 1015
Score = 28.9 bits (65), Expect = 7.0
Identities = 13/87 (14%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 64 RDRRSQKLEKMELLNLQSSLNSEIQ----AKTQISEELSKTRSELIAAQKEICDFRLKME 119
R++ L + + + +Q + + +T + + + A++E+ +LK+E
Sbjct: 855 RNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL--KKLKIE 912
Query: 120 SVSMDLRRK-----DSQLKELQSRLES 141
+ S++ +K ++++ +LQ +++
Sbjct: 913 ARSVERYKKLHIGLENKIMQLQRKIDE 939
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 31.0 bits (70), Expect = 0.59
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 69 QKLEKME--LLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLR 126
+ LEK E L+ + S +Q K + ++ + L A+ E CD ++ + L
Sbjct: 27 EALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAE-ERCD---QLIKNKIQL- 81
Query: 127 RKDSQLKELQSRLE 140
++++KE+ RLE
Sbjct: 82 --EAKVKEMNKRLE 93
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.61
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 131 QLKELQSRLE--SGDILERPASQIS 153
LK+LQ+ L+ + D PA I
Sbjct: 21 ALKKLQASLKLYADD--SAPALAIK 43
Score = 29.9 bits (66), Expect = 1.6
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 9/30 (30%)
Query: 72 EKMELLNLQSSL-----NS----EIQAKTQ 92
EK L LQ+SL +S I+A +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
Score = 28.0 bits (61), Expect = 6.9
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 9/32 (28%)
Query: 443 KQRYVQIARVGDTKKIYQMDYIPEEQLLVVLA 474
KQ + ++ + K+Y D P LA
Sbjct: 19 KQ---ALKKLQASLKLYADDSAP------ALA 41
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 77
Score = 29.8 bits (67), Expect = 0.65
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 239 VVCDICGFACHLSCCDKVPPSCPVPPD 265
++CD C A H+ C + PP VP +
Sbjct: 42 LLCDECNVAYHIYCLN--PPLDKVPEE 66
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 30.3 bits (68), Expect = 0.75
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 239 VVCDICGFACHLSCCDKVPPSCP 261
+VCD C H C V S P
Sbjct: 70 LVCDTCDKGYHTFCLQPVMKSVP 92
Score = 28.4 bits (63), Expect = 2.9
Identities = 7/25 (28%), Positives = 8/25 (32%), Gaps = 2/25 (8%)
Query: 239 VVCDICGFACHLSCCDKVPPSCPVP 263
C CG H C D P+
Sbjct: 23 FFCTTCGQHYHGMCLD--IAVTPLK 45
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 29.5 bits (66), Expect = 0.78
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 9/44 (20%)
Query: 224 CNHCTSLMVGLTRQGVVCDICGFACHLSCCDK-----VPPSCPV 262
CN C SL++ QG C+ CG HL C K P CP
Sbjct: 18 CNICHSLLI----QGQSCETCGIRMHLPCVAKYFQSNAEPRCPH 57
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics,
PR structure initiative; 2.01A {Porphyromonas
gingivalis} SCOP: a.287.1.2
Length = 133
Score = 30.1 bits (67), Expect = 1.1
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 21/120 (17%)
Query: 89 AKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDS----QLKELQSRLESGDI 144
AK+ + + +E+ +E F + + V + L+ DS Q L +R++
Sbjct: 25 AKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVALIARMDE--- 81
Query: 145 LERPASQISYLDHFLKESRHTGSVESEDGDIEDNRVP--SIASSRSNLSELTI-DQMNNM 201
ER SYL G + + DGDI+DN + ++ S+ L +T+ + +NNM
Sbjct: 82 -ERKKYVASYL----------GVIMASDGDIDDNELALWTLISTLCGLPTMTVMEAINNM 130
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 28.5 bits (64), Expect = 1.1
Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 241 CDICGFACHLSCCDKVPPSCPVPPDQ 266
CD C HL C D PP +P
Sbjct: 24 CDTCSRVYHLDCLD--PPLKTIPKGM 47
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.8 bits (72), Expect = 1.2
Identities = 30/190 (15%), Positives = 55/190 (28%), Gaps = 44/190 (23%)
Query: 35 LEYLKHASSLGGPGVGTVPGVGGPGDKNWRDRRSQKLEKMELLNLQSSLNSEIQAKTQIS 94
+ A +G P G V DK +
Sbjct: 1188 IMQADLALKMGVPIYGIVAMAATATDK---------------------------IGRSVP 1220
Query: 95 EE----LSKTRSELIAAQKEICDFRLKMESVSMDLRRK------DSQLKELQSRLES--- 141
L+ R + + + +K + R +++L+ L+ E
Sbjct: 1221 APGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPS 1280
Query: 142 GDILERPASQISYLDHFLKESRHTGSVESEDGDIEDNRVPSIASSRSNLSE--LTIDQMN 199
D E + + + + + + + G+ R P IA R L+ LTID +
Sbjct: 1281 EDQNEFLLERTREIHNEAE--SQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLG 1338
Query: 200 NMLRHDRSSK 209
H S+K
Sbjct: 1339 VASFHGTSTK 1348
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC
complex, transcription; 1.43A {Homo sapiens}
Length = 60
Score = 28.2 bits (63), Expect = 1.6
Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 241 CDICGFACHLSCCDKVPPSCPVPPDQ 266
CD C HL C D PP +P
Sbjct: 20 CDTCSRVYHLDCLD--PPLKTIPKGM 43
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins
4-kinase, frequenin, yeast, lipoprotein, membrane,
myristate, nucleus; NMR {Saccharomyces cerevisiae}
Length = 52
Score = 28.0 bits (62), Expect = 1.6
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 529 NSSQIILYEITRTKTRHKRLHEVILPTLAQCIHIFS 564
N+ Q L+ + ++ ++HE + P L I S
Sbjct: 13 NNLQTNLFNTSSGSDKNVKIHENVAPALVLSSMIMS 48
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 30.1 bits (67), Expect = 2.3
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 239 VVCDICGFACHLSCCDKVPPSCPVPPD 265
++CD C A H+ C D PP VP +
Sbjct: 190 LMCDECDMAFHIYCLD--PPLSSVPSE 214
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type
2 promoters, transcription, hypothetica protein,
preinitiation complex, yeast RNA polymerase III; 3.2A
{Saccharomyces cerevisiae}
Length = 588
Score = 30.5 bits (68), Expect = 2.5
Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 6/116 (5%)
Query: 579 YKFSQDNRPIPLIHQDNPLVSLLTYSPVDALLAIELPRGEFLLVFHSLAAYVDSQGHKSR 638
F + L Q + SP+D +A+ G + +
Sbjct: 69 LDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLS 128
Query: 639 EKEIMYPALPTGASYM-----DGQLLIFSETHVDVFNAESGDWLQTVNIRRALPLD 689
+ S + DG+L FS E + ++ + A D
Sbjct: 129 SRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEF-YFESSIRLSDAGSKD 183
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 28.1 bits (62), Expect = 2.6
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 224 CNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCP 261
C+ C + + CD+C A H C P P
Sbjct: 28 CSICMDGESQNSNVILFCDMCNLAVHQECYG--VPYIP 63
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 30.2 bits (69), Expect = 2.6
Identities = 14/77 (18%), Positives = 39/77 (50%), Gaps = 13/77 (16%)
Query: 65 DRRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMD 124
RR + ++++E L+S N +LSK +L K+ + + +++ + +
Sbjct: 37 KRRREIIKRLE--ALRSERN-----------KLSKEIGKLKREGKDTTEIQNRVKELKEE 83
Query: 125 LRRKDSQLKELQSRLES 141
+ R + +L++++ L++
Sbjct: 84 IDRLEEELRKVEEELKN 100
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin
activation, cytoplas membrane, cell adhesion; HET: SRT;
1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 29.3 bits (65), Expect = 2.8
Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 17/118 (14%)
Query: 283 YEGYVKVPKTGGVK-KGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAV 341
Y+KV K + KG+ + + D + Y + + PA ++L V
Sbjct: 49 LADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNL------RGCEV 102
Query: 342 SGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSELHR 399
+ DV + +K F I + G N + D++ + W+ A +
Sbjct: 103 T----PDVNISGQK-----FNIKLLIPVAEGM-NEIWLRCDNEKQYAHWMAACRLASK 150
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.6 bits (66), Expect = 2.9
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 201 MLRHDRSSKHHQFITRTFTSPTKCNHCTSL---MVGLTRQG-VVCDICGF 246
M+ + K C C +V +G VVC +CG
Sbjct: 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGL 50
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator,
metal-binding, finger, signaling protein; NMR {Homo
sapiens}
Length = 71
Score = 27.5 bits (61), Expect = 2.9
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 207 SSKHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCP 261
HH + C+ C + + CD+C A H C P P
Sbjct: 3 HHHHHHMQS-LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG--VPYIP 54
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding
domain, PDI-like protein, structural genomics; NMR
{Arabidopsis thaliana} SCOP: g.49.1.3
Length = 89
Score = 28.0 bits (62), Expect = 3.0
Identities = 11/56 (19%), Positives = 15/56 (26%), Gaps = 4/56 (7%)
Query: 209 KHHQFITRTFTSPTKCNHCTSLMVGLTRQGVVCDICGFACHLSCCDKVPPSCPVPP 264
+ H+ T C+ C + CD C F H C P
Sbjct: 36 EEHEL-ELTRVQVYTCDKCEEEGTIWSYH---CDECDFDLHAKCALNEDTKESGPS 87
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 28.5 bits (63), Expect = 3.5
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 239 VVCDICGFACHLSCCDKVPPSCPVP 263
+ CD C H+ C + PP P
Sbjct: 74 LFCDDCDRGYHMYCLN--PPVAEPP 96
Score = 27.7 bits (61), Expect = 6.2
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 239 VVCDICGFACHLSCCD 254
V C CG + H +C
Sbjct: 24 VSCADCGRSGHPTCLQ 39
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; 2.20A {Eubacterium eligens}
Length = 138
Score = 28.8 bits (64), Expect = 3.5
Identities = 8/65 (12%), Positives = 30/65 (46%)
Query: 72 EKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQ 131
K +L + ++ + + EL + + ++ KEI + + ++ ++ + +++
Sbjct: 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132
Query: 132 LKELQ 136
L + +
Sbjct: 133 LNDSK 137
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 26.9 bits (60), Expect = 3.6
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 239 VVCDICGFACHLSCCDKVPPSCPVPPD 265
++CD C A HL C P VP
Sbjct: 16 ILCDECNKAFHLFCLR--PALYEVPDG 40
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 28.8 bits (64), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 344 VRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397
+ + K F + ++ L ADS+ E +W+ L+++
Sbjct: 75 LDSCMGVVQNNKVRRFAFELKM-----QDKSSYLLA-ADSEVEMEEWITILNKI 122
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil,
endocytosis/exocytosis complex; 3.00A {Saccharomyces
cerevisiae} SCOP: h.1.33.1
Length = 135
Score = 28.7 bits (63), Expect = 3.8
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 22/98 (22%)
Query: 66 RRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSEL--------------------- 104
+R E+ L+ + E + +T+ EE K E+
Sbjct: 38 KRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARME 97
Query: 105 -IAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLES 141
A + ++ M L QLK L+ + S
Sbjct: 98 KYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVMHS 135
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 29.6 bits (65), Expect = 3.9
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 15/109 (13%)
Query: 288 KVPKTGGVKKGWVRQFVVVCDFKLFLYDISPDRNALPAVYVSLVLDMRDEDFAVSGVRES 347
+ ++ W + +V + L Y+ + L D + +S
Sbjct: 28 ERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAED------SIVQS 81
Query: 348 DVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSE 396
H K+ +F ++ S + L A S T+ WV A+
Sbjct: 82 VPEHPKKE---HVFCLSNS------CGDVYLFQATSQTDLENWVTAIHS 121
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 27.6 bits (61), Expect = 4.1
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 239 VVCDICGFACHLSCCDKVPPSCPVPPDQ 266
+ CD C H+ C PP +P
Sbjct: 32 LFCDGCDDNYHIFCLL--PPLPEIPRGI 57
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 127
Score = 28.6 bits (63), Expect = 4.2
Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 19/119 (15%)
Query: 284 EGYVKVPKTGGVKKGWVRQFVVV-----CDFKLFLYDISPDRNALPAVYVSLVLDMRDED 338
+G++ + + K W R + C P++ V+ + D
Sbjct: 15 QGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARK-VIRLSD-- 71
Query: 339 FAVSGVRESDVIHATKKDIPCIFRITTSLMDPPGTKNHTLMLADSDTEKTKWVVALSEL 397
V E+ ++ +D F + TK +LA E+ WV A+ L
Sbjct: 72 --CLRVAEAGGEASSPRDTSA-FFLE--------TKERLYLLAAPAAERGDWVQAICLL 119
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein
biosynthesis, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Length = 471
Score = 29.2 bits (66), Expect = 5.1
Identities = 7/48 (14%), Positives = 15/48 (31%)
Query: 64 RDRRSQKLEKMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEI 111
R + +++ L ++ ++EEL L I
Sbjct: 416 RVFDLESMKRRRLAIAYGDAADAVENLAAVAEELESPVRSLSGQAPRI 463
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 27.6 bits (61), Expect = 5.3
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 73 KMELLNLQSSLNSEIQAKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQL 132
K++ N K Q + + E QK K++ ++ + +
Sbjct: 15 KLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQK-------KLKGTEDEVEKYSESV 67
Query: 133 KELQSRLESGD 143
KE Q +LE +
Sbjct: 68 KEAQEKLEQAE 78
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 27.7 bits (61), Expect = 6.1
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 239 VVCDICGFACHLSCCDKVPPSCPVPPDQ 266
+ CD C H+ CCD PP +P
Sbjct: 78 LFCDSCDRGFHMECCD--PPLTRMPKGM 103
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics,
unknown function, PSI-2, protein structure initiative;
2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Length = 171
Score = 28.0 bits (62), Expect = 7.6
Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 6/122 (4%)
Query: 89 AKTQISEELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLESGDILERP 148
++ + + + + A EI K+ + + K ++ +S +L R
Sbjct: 3 SRRKPNPVIVADIRQAEGALAEIATIDRKVGEIEAQMNEAIDAAKA-RASQKSAPLLARR 61
Query: 149 ASQISYLDHFLKESRH--TG---SVESEDGDIEDNRVPSIASSRSNLSELTIDQMNNMLR 203
+ F ++ S++ G I I ++T++++
Sbjct: 62 KELEDGVATFATLNKTEMFKDRKSLDLGFGTIGFRLSTQIVQMSKITKDMTLERLRQFGI 121
Query: 204 HD 205
+
Sbjct: 122 SE 123
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus
norvegicus}
Length = 96
Score = 26.8 bits (59), Expect = 8.3
Identities = 9/41 (21%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 60 DKNWRDRRSQKLEKMELLNLQSSLNSEIQ-AKTQISEELSK 99
+ R+ K +++EL + S+ ++++ A+ Q+ ++L K
Sbjct: 56 AQYQREYSEFKRQQLELDDELKSVENQMRYAQMQL-DKLKK 95
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 28.7 bits (65), Expect = 9.0
Identities = 3/46 (6%), Positives = 21/46 (45%)
Query: 96 ELSKTRSELIAAQKEICDFRLKMESVSMDLRRKDSQLKELQSRLES 141
+++ + + + + K + + +++++EL+ +++
Sbjct: 56 KIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDY 101
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_9
Length = 189
Score = 27.8 bits (61), Expect = 9.3
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 435 QLLV-VLAGKQRYVQI---ARVGDTK-KIYQMDYIPEEQLLVVLAGKQ 477
Q+ V L G+ + + V D K +I Q + + +V G
Sbjct: 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFI 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.394
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,316,348
Number of extensions: 689811
Number of successful extensions: 1569
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1522
Number of HSP's successfully gapped: 160
Length of query: 760
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 659
Effective length of database: 3,881,772
Effective search space: 2558087748
Effective search space used: 2558087748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.8 bits)