BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3726
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 96/127 (75%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ GRI++GLFGK VPKTVENF LAT G + Y G+KFHR++K+F++QG
Sbjct: 18 VFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALAT-GEKGYGYKGSKFHRVIKDFMIQG 76
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD+ DG G +SIYG+ F DENFK+KH G G+VSMAN+GP++NG QFFIT++ WLDG
Sbjct: 77 GDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDG 136
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 137 KHVVFGK 143
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 151 bits (381), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 92/127 (72%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+YFD+ G GRI++GLFGK VPKT NF LA + + Y G+KFHR++ +F++QG
Sbjct: 9 VYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAK-KPKGEGYPGSKFHRVIADFMIQG 67
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD DG G SIYG+KF DENFK+KH GAG++SMAN+G ++NG QFFIT TPWLDG
Sbjct: 68 GDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDG 127
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 128 RHVVFGK 134
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 150 bits (379), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/127 (59%), Positives = 92/127 (72%), Gaps = 2/127 (1%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+YFD+ GR+++GLFG DVPKTVENFK LA+ G Y G+ FHR+++NF++QG
Sbjct: 8 VYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLAS-GENGFGYKGSIFHRVIRNFMIQG 66
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD DG G SIYG +FDDEN KIKH G VSMAN+GPNSNG QFF+T + TPWLDG
Sbjct: 67 GDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPWLDG 125
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 126 RHVVFGK 132
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 147 bits (371), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 92/127 (72%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+YFDL GR+++GLFGK VPKTV+NF LAT G + Y +KFHR++K+F++QG
Sbjct: 15 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALAT-GEKGFGYKDSKFHRVIKDFMIQG 73
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD DG G SIYG++F DENFK+KH G G+VSMAN+G ++NG QFFIT T WLDG
Sbjct: 74 GDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDG 133
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 134 KHVVFGK 140
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 147 bits (371), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 92/127 (72%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+YFDL GR+++GLFGK VPKTV+NF LAT G + Y +KFHR++K+F++QG
Sbjct: 15 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALAT-GEKGFGYKDSKFHRVIKDFMIQG 73
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD DG G SIYG++F DENFK+KH G G+VSMAN+G ++NG QFFIT T WLDG
Sbjct: 74 GDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDG 133
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 134 KHVVFGK 140
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 147 bits (370), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 93/127 (73%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ GRI++GLFG VPKTVENF LAT G + Y G+ FHR++K+F++QG
Sbjct: 10 VFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALAT-GEKGYGYKGSIFHRVIKDFMIQG 68
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD DG G +SIYG+ F DENFK+KH G G+VSMAN+GP++NG QFFIT++ WLDG
Sbjct: 69 GDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDG 128
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 129 KHVVFGK 135
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 146 bits (369), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 91/127 (71%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+YFDL GR+I GLFGK VPKTV+NF LAT G + Y +KFHR++K+F++QG
Sbjct: 18 VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALAT-GEKGFGYKNSKFHRVIKDFMIQG 76
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD DG G SIYG++F DENFK+KH G G+VSMAN+G ++NG QFFIT T WLDG
Sbjct: 77 GDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDG 136
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 137 KHVVFGK 143
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 146 bits (369), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 91/127 (71%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+YFDL GR+I GLFGK VPKTV+NF LAT G + Y +KFHR++K+F++QG
Sbjct: 8 VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALAT-GEKGFGYKNSKFHRVIKDFMIQG 66
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD DG G SIYG++F DENFK+KH G G+VSMAN+G ++NG QFFIT T WLDG
Sbjct: 67 GDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDG 126
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 127 KHVVFGK 133
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 139 bits (349), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 89/127 (70%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ +G GR+ LF VPKT ENF+ L+T G + Y G+ FHRI+ F+ QG
Sbjct: 5 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQG 63
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD +++G G SIYG+KF+DENF +KHTG G +SMAN+GPN+NG QFFI + T WLDG
Sbjct: 64 GDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 123
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 124 KHVVFGK 130
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 138 bits (348), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ +G GR+ LF VPKT ENF+ L+T G + Y G+ FHRI+ F+ QG
Sbjct: 25 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQG 83
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF+DENF +KHTG G +SMAN+GPN+NG QFFI + T WLDG
Sbjct: 84 GDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 143
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 144 KHVVFGK 150
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 138 bits (348), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ +G GR+ LF VPKT ENF+ L+T G + Y G+ FHRI+ F+ QG
Sbjct: 14 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQG 72
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF+DENF +KHTG G +SMAN+GPN+NG QFFI + T WLDG
Sbjct: 73 GDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 132
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 133 KHVVFGK 139
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 138 bits (347), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ +G GR+ LF VPKT ENF+ L+T G + Y G+ FHRI+ F+ QG
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQG 64
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF+DENF +KHTG G +SMAN+GPN+NG QFFI + T WLDG
Sbjct: 65 GDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 125 KHVVFGK 131
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 138 bits (347), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ +G GR+ LF VPKT ENF+ L+T G + Y G+ FHRI+ F+ QG
Sbjct: 5 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQG 63
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF+DENF +KHTG G +SMAN+GPN+NG QFFI + T WLDG
Sbjct: 64 GDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 123
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 124 KHVVFGK 130
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 138 bits (347), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ +G GR+ LF VPKT ENF+ L+T G + Y G+ FHRI+ F+ QG
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQG 64
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF+DENF +KHTG G +SMAN+GPN+NG QFFI + T WLDG
Sbjct: 65 GDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 125 KHVVFGK 131
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 138 bits (347), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ +G GR+ LF VPKT ENF+ L+T G + Y G+ FHRI+ F+ QG
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQG 64
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF+DENF +KHTG G +SMAN+GPN+NG QFFI + T WLDG
Sbjct: 65 GDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 125 KHVVFGK 131
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ +G GR+ LF VPKT ENF+ L+T G + Y G+ FHRI+ F+ QG
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQG 64
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF+DENF +KHTG G +SMAN+GPN+NG QFFI + T WLDG
Sbjct: 65 GDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 125 XHVVFGK 131
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ +G GR+ LF VPKT ENF+ L+T G + Y G+ FHRI+ F+ QG
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQG 64
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF+DENF +KHTG G +SMAN+GPN+NG QFFI + T WLDG
Sbjct: 65 GDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDG 124
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 125 XHVVFGK 131
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/127 (55%), Positives = 87/127 (68%), Gaps = 2/127 (1%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+YFD+ + GRI +GLFGKD P T ENF+ L T G Y + FHR+++NF++QG
Sbjct: 14 VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCT-GEHGFGYKDSIFHRVIQNFMIQG 72
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD DG G SIYG+KF DEN +KH G +SMAN+GPN+NG QFFIT + TPWLDG
Sbjct: 73 GDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDG 131
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 132 RHVVFGK 138
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ +G GR+ LF VPKT ENF+ L+T G + Y G+ FHRI+ F+ QG
Sbjct: 10 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQG 68
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF+DENF +KHTG G +SMAN+GPN+NG QFFI + T WLDG
Sbjct: 69 GDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDG 128
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 129 XHVVFGK 135
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 89/127 (70%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ +G GR+ LF VPKT ENF+ L+T G + Y G+ FHRI+ F+ QG
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQG 64
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
G+ +++G G SIYG+KF+DENF +KHTG G +SMAN+GPN+NG QFFI + T WLDG
Sbjct: 65 GNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 125 KHVVFGK 131
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/127 (55%), Positives = 87/127 (68%), Gaps = 2/127 (1%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+YFD+ + GRI +GLFGKD P T ENF+ L T G Y + FHR+++NF++QG
Sbjct: 14 VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCT-GEHGFGYKDSIFHRVIQNFMIQG 72
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD DG G SIYG+KF DEN +KH G +SMAN+GPN+NG QFFIT + TPWLDG
Sbjct: 73 GDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDG 131
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 132 AHVVFGK 138
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ +G GR+ LF VPKT ENF+ L+T G + Y G+ FHRI+ F+ QG
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQG 64
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF+DENF +KHTG G ++MAN+GPN+NG QFFI + T WLDG
Sbjct: 65 GDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 125 KHVVFGK 131
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 136 bits (343), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ +G GR+ LF VPKT ENF+ L+T G + Y G+ FHRI+ F+ QG
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQG 64
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
G+ + +G G SIYG+KF+DENF +KHTG G +SMAN+GPN+NG QFFI + T WLDG
Sbjct: 65 GNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 125 KHVVFGK 131
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 136 bits (343), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ +G GR+ LF VPKT ENF+ L+T G + Y G+ FH+I+ F+ QG
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHKIIPGFMCQG 64
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF+DENF +KHTG G +SMAN+GPN+NG QFFI + T WLDG
Sbjct: 65 GDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 125 KHVVFGK 131
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 136 bits (343), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 87/126 (69%), Gaps = 1/126 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ +G GR+ LF VPKT ENF+ L+T G + Y G+ FHRI+ F+ QG
Sbjct: 5 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQG 63
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF+DENF +KHTG G +SMAN+GPN+NG QFFI + T WLDG
Sbjct: 64 GDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDG 123
Query: 121 HHTVFG 126
H VFG
Sbjct: 124 KHVVFG 129
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 135 bits (340), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 88/133 (66%), Gaps = 6/133 (4%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT----VGVENKT--YIGTKFHRIVK 54
++FD+ G GRI++ L+ VPKT NF+ L T +G K + G+KFHRI+
Sbjct: 6 VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP 65
Query: 55 NFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSA 114
NF++QGGD +G G SIYG+KF DENFK KHTG G +SMAN+GPN+NG QFF+
Sbjct: 66 NFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVK 125
Query: 115 TPWLDGHHTVFGK 127
T WLDG H VFG+
Sbjct: 126 TEWLDGKHVVFGR 138
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 135 bits (339), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/131 (50%), Positives = 85/131 (64%), Gaps = 4/131 (3%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKT----YIGTKFHRIVKNF 56
++FD++ G GR+ + LF VPKT ENF+ T Y G+ FHR++K+F
Sbjct: 13 VFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDF 72
Query: 57 VLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATP 116
++QGGD V DG G SIY F DENFK++H+ G +SMANSGP++NGCQFFIT S
Sbjct: 73 MIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCD 132
Query: 117 WLDGHHTVFGK 127
WLDG H VFGK
Sbjct: 133 WLDGKHVVFGK 143
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 134 bits (338), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 86/127 (67%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ +G GR+ LF VPKT ENF+ L+T G + Y G+ FHRI+ F QG
Sbjct: 5 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFXCQG 63
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF+DENF +KHTG G +S AN+GPN+NG QFFI + T WLDG
Sbjct: 64 GDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDG 123
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 124 KHVVFGK 130
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+YFD+ +G GR++ L+ VPKT ENF+ L T G + Y G+ FHR++ +F+LQG
Sbjct: 4 VYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCT-GEKGFGYAGSPFHRVIPDFMLQG 62
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD +G G SIYG KF DENFK H G +SMAN+GPN+NG QFFIT PWLDG
Sbjct: 63 GDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDG 122
Query: 121 HHTVFGK 127
H VFG+
Sbjct: 123 KHVVFGE 129
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 132 bits (332), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++F+++ N EGRI+ L+ + VPKT +NF+ LAT G Y + FHR++ F+LQG
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELAT-GQHGFGYKDSIFHRVIPQFMLQG 63
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF DENF++KHT G +SMAN+G N+NG QFFIT T WLDG
Sbjct: 64 GDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDG 123
Query: 121 HHTVFGK 127
H VFG+
Sbjct: 124 KHVVFGE 130
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 132 bits (332), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++F+++ N EGRI+ L+ + VPKT +NF+ LAT G Y + FHR++ F+LQG
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELAT-GQHGFGYKDSIFHRVIPQFMLQG 64
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF DENF++KHT G +SMAN+G N+NG QFFIT T WLDG
Sbjct: 65 GDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDG 124
Query: 121 HHTVFGK 127
H VFG+
Sbjct: 125 KHVVFGE 131
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 132 bits (331), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 86/132 (65%), Gaps = 6/132 (4%)
Query: 1 MYFDLNYN--GFHE---GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKN 55
++FD+ Y G E GRI+ LF KDVPKT +NF+ L + Y + FHRI+ N
Sbjct: 5 VFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPA-GEGYRESTFHRIIPN 63
Query: 56 FVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSAT 115
F++QGGD +G G SIYGDKF DENF KH G +SMAN+GPN+NG QFFIT + T
Sbjct: 64 FMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVT 123
Query: 116 PWLDGHHTVFGK 127
WLDG H VFG+
Sbjct: 124 SWLDGKHVVFGE 135
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 83/127 (65%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ NG G I LF VPKT NF+ L T G + Y G+ FHR++ +F+LQG
Sbjct: 4 VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCT-GEKGFGYAGSHFHRVIPDFMLQG 62
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD +G G SIYG KF DENF++KH G +SMAN+GPN+NG QFFIT T WLDG
Sbjct: 63 GDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDG 122
Query: 121 HHTVFGK 127
H VFG+
Sbjct: 123 KHVVFGE 129
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/131 (51%), Positives = 85/131 (64%), Gaps = 4/131 (3%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT--VGVENKT--YIGTKFHRIVKNF 56
++ D+N G+ LF VPKT ENF+ T V N Y T FHR++K F
Sbjct: 62 VFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEF 121
Query: 57 VLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATP 116
++QGGD + ++G GS+SIYG+KFDDENF IKH G +SMANSGPN+NGCQFFIT
Sbjct: 122 MIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCE 181
Query: 117 WLDGHHTVFGK 127
WLDG + VFG+
Sbjct: 182 WLDGKNVVFGR 192
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ GRI++ L VP+T ENF+ L T G Y FHR++ F+ QG
Sbjct: 13 VFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCT-GERGFGYHNCCFHRVIPQFMCQG 71
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD V DG G SIYG KFDDENF+++H G G +SMANSGPN+NG QFFI + WLDG
Sbjct: 72 GDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDG 131
Query: 121 HHTVFGK 127
H VFG+
Sbjct: 132 KHVVFGR 138
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 129 bits (325), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 83/132 (62%), Gaps = 5/132 (3%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT---VGVENKT--YIGTKFHRIVKN 55
++FD++ + + GRII LF P+T ENF+ L T +G K Y + FHRI+
Sbjct: 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQ 65
Query: 56 FVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSAT 115
F+ QGGD+ +G G SIYG F DENF +KH G +SMAN+GPN+N QFFIT+
Sbjct: 66 FMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPC 125
Query: 116 PWLDGHHTVFGK 127
PWLDG H VFGK
Sbjct: 126 PWLDGKHVVFGK 137
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 129 bits (324), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 83/126 (65%), Gaps = 1/126 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+Y D++ NG GR+++ L VPKT ENF+ L T G + Y G+ FHR++ +F+ Q
Sbjct: 6 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQA 64
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG +F DENF +KH G G +SMAN+GPN+NG QFFI T WLDG
Sbjct: 65 GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 124
Query: 121 HHTVFG 126
H VFG
Sbjct: 125 KHVVFG 130
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 129 bits (323), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 83/126 (65%), Gaps = 1/126 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+Y D++ NG GR+++ L VPKT ENF+ L T G + Y G+ FHR++ +F+ Q
Sbjct: 5 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQA 63
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG +F DENF +KH G G +SMAN+GPN+NG QFFI T WLDG
Sbjct: 64 GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 123
Query: 121 HHTVFG 126
H VFG
Sbjct: 124 KHVVFG 129
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 129 bits (323), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 83/126 (65%), Gaps = 1/126 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+Y D++ NG GR+++ L VPKT ENF+ L T G + Y G+ FHR++ +F+ Q
Sbjct: 7 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQA 65
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG +F DENF +KH G G +SMAN+GPN+NG QFFI T WLDG
Sbjct: 66 GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 125
Query: 121 HHTVFG 126
H VFG
Sbjct: 126 KHVVFG 131
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 129 bits (323), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 83/126 (65%), Gaps = 1/126 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+Y D++ NG GR+++ L VPKT ENF+ L T G + Y G+ FHR++ +F+ Q
Sbjct: 6 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQA 64
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG +F DENF +KH G G +SMAN+GPN+NG QFFI T WLDG
Sbjct: 65 GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 124
Query: 121 HHTVFG 126
H VFG
Sbjct: 125 KHVVFG 130
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 129 bits (323), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 80/133 (60%), Gaps = 6/133 (4%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT----VGVENK--TYIGTKFHRIVK 54
+YFD++ GRI + LF VP T ENF+ L T +G K Y G+ FHRI+
Sbjct: 22 VYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIP 81
Query: 55 NFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSA 114
F++QGGD DG G SIYG KF DENF H +SMAN+GPN+NG QFFIT
Sbjct: 82 QFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVP 141
Query: 115 TPWLDGHHTVFGK 127
PWLDG H VFGK
Sbjct: 142 CPWLDGKHVVFGK 154
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 128 bits (321), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 86/134 (64%), Gaps = 7/134 (5%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT--VGVENKT-----YIGTKFHRIV 53
++FD++ G GRI++ LF VPKT ENF+ L T G+ T + G FHRI+
Sbjct: 18 VFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRII 77
Query: 54 KNFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMS 113
K F++QGGD +G G SIYG+KF+DENF KH G +SMAN+G N+NG QFFIT
Sbjct: 78 KKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTV 137
Query: 114 ATPWLDGHHTVFGK 127
TP LDG H VFG+
Sbjct: 138 PTPHLDGKHVVFGQ 151
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 82/132 (62%), Gaps = 5/132 (3%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT---VGVENKT--YIGTKFHRIVKN 55
++FD++ + + GRII LF P+T ENF+ L T +G K Y + FHRI+
Sbjct: 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQ 65
Query: 56 FVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSAT 115
F+ QGGD+ +G G SIYG F DENF +KH G +SMAN+GPN+N QF IT+
Sbjct: 66 FMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLVPC 125
Query: 116 PWLDGHHTVFGK 127
PWLDG H VFGK
Sbjct: 126 PWLDGKHVVFGK 137
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 87/136 (63%), Gaps = 9/136 (6%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT----VGVENKT--YIGTKFHRIVK 54
++FD++ + GRI++ L+ VPKT ENF+ L T G K Y + FHR++
Sbjct: 10 VFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIP 69
Query: 55 NFVLQGGDVVYNDGRGSISIYGDKFDDENFKIK---HTGAGFVSMANSGPNSNGCQFFIT 111
NF++QGGD +G G SIYG F DE+F K HTG G +SMAN+GPN+NG QFFI
Sbjct: 70 NFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFIC 129
Query: 112 MSATPWLDGHHTVFGK 127
+ATPWLDG H VFG+
Sbjct: 130 TAATPWLDGKHVVFGR 145
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+Y D+ GRI + L VP T ENF+ L T + + G+ FHRI+ F+ QG
Sbjct: 14 VYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCT-HEKGFGFKGSSFHRIIPQFMCQG 72
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG KFDDENF +KHTG G +SMANSGPN+NG QFF+T T WLDG
Sbjct: 73 GDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDG 132
Query: 121 HHTVFGK 127
H VFG+
Sbjct: 133 KHVVFGE 139
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 126 bits (316), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+Y D+ GRI + L VP T ENF+ L T + + G+ FHRI+ F+ QG
Sbjct: 6 VYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCT-HEKGFGFKGSSFHRIIPQFMCQG 64
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG KFDDENF +KHTG G +SMANSGPN+NG QFF+T T WLDG
Sbjct: 65 GDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDG 124
Query: 121 HHTVFGK 127
H VFG+
Sbjct: 125 KHVVFGE 131
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 125 bits (313), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+YFD+ N GRI++ L VPKT +NF+TL + + Y G+ FHRI+ F++QG
Sbjct: 30 VYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCER-PKGEGYKGSTFHRIIPGFMVQG 88
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF DENF++KHT G +SMAN G ++NG QFFIT+ T WLD
Sbjct: 89 GDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDE 148
Query: 121 HHTVFGK 127
H VFG+
Sbjct: 149 KHVVFGE 155
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 82/126 (65%), Gaps = 1/126 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ +G GRI + LF VP+T ENF+ L T G + + + FHR++ +FV QG
Sbjct: 9 VFFDVCADGEPLGRITMELFSNIVPRTAENFRALCT-GEKGFGFKNSIFHRVIPDFVCQG 67
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD+ +DG G SIYGDKF+DENF +KHTG G +SMAN G N+N QF IT+ LD
Sbjct: 68 GDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDF 127
Query: 121 HHTVFG 126
H VFG
Sbjct: 128 KHVVFG 133
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 121 bits (304), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 78/127 (61%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+Y D+ GRI L VP T ENF+ L T + + G+ FHRI+ F QG
Sbjct: 15 VYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCT-HEKGFGFKGSSFHRIIPQFXCQG 73
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG KFDDENF +KHTG G +S ANSGPN+NG QFF+T T WLDG
Sbjct: 74 GDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDG 133
Query: 121 HHTVFGK 127
H VFG+
Sbjct: 134 KHVVFGE 140
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/134 (47%), Positives = 81/134 (60%), Gaps = 7/134 (5%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT--VGVENKT-----YIGTKFHRIV 53
+FD+ N GR++ LF PKT ENF+ L T G T Y FHR+V
Sbjct: 29 CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVV 88
Query: 54 KNFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMS 113
K+F++QGGD +GRG SIYG F+DE+F +KH A +SMAN G ++NG QFFIT
Sbjct: 89 KDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITTK 148
Query: 114 ATPWLDGHHTVFGK 127
TP LDGHH VFG+
Sbjct: 149 PTPHLDGHHVVFGQ 162
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 83/116 (71%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I++ L+ K PKT +NF LA G N GTKFHRI+K+F++QGGD GRG
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELARRGYYN----GTKFHRIIKDFMIQGGDPT-GTGRGGA 75
Query: 73 SIYGDKFDDE-NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
SIYG +F+DE + +K TGAG ++MAN+GP++NG QFF+T++ T WLDG HT+FG+
Sbjct: 76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGR 131
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 83/116 (71%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I++ L+ K PKT +NF LA G N GTKFHRI+K+F++QGGD GRG
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELARRGYYN----GTKFHRIIKDFMIQGGDPT-GTGRGGA 75
Query: 73 SIYGDKFDDE-NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
SIYG +F+DE + +K TGAG ++MAN+GP++NG QFF+T++ T WLDG HT+FG+
Sbjct: 76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGR 131
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 83/116 (71%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I++ L+ K PKT +NF LA G N GTKFHRI+K+F++QGGD GRG
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELARRGYYN----GTKFHRIIKDFMIQGGDPT-GTGRGGA 75
Query: 73 SIYGDKFDDE-NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
SIYG +F+DE + +K TGAG ++MAN+GP++NG QFF+T++ T WLDG HT+FG+
Sbjct: 76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGR 131
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 118 bits (296), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 80/134 (59%), Gaps = 7/134 (5%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT--VGVENKT-----YIGTKFHRIV 53
+FD+ N GR++ LF PKT ENF+ L T G T Y FHR+V
Sbjct: 12 CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVV 71
Query: 54 KNFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMS 113
K+F++QGGD +GRG SIYG F+DE+F +KH +SMAN G ++NG QFFIT
Sbjct: 72 KDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTK 131
Query: 114 ATPWLDGHHTVFGK 127
TP LDGHH VFG+
Sbjct: 132 PTPHLDGHHVVFGQ 145
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 80/134 (59%), Gaps = 7/134 (5%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT--VGVENKT-----YIGTKFHRIV 53
+FD+ N GR++ LF PKT ENF+ L T G T Y FHR+V
Sbjct: 12 CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVV 71
Query: 54 KNFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMS 113
K+F++QGGD +GRG SIYG F+DE+F +KH +SMAN G ++NG QFFIT
Sbjct: 72 KDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTK 131
Query: 114 ATPWLDGHHTVFGK 127
TP LDGHH VFG+
Sbjct: 132 PTPHLDGHHVVFGQ 145
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 79/134 (58%), Gaps = 7/134 (5%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT-------VGVENKTYIGTKFHRIV 53
++ D+ +G GRI++ L+ P+T NF L T + + Y G+ FHR++
Sbjct: 9 VFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVI 68
Query: 54 KNFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMS 113
KNF++QGGD DG G SIYG FDDE F +KH VSMAN GPN+NG QFFIT +
Sbjct: 69 KNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTT 128
Query: 114 ATPWLDGHHTVFGK 127
P L+ H VFGK
Sbjct: 129 PAPHLNNIHVVFGK 142
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 78/133 (58%), Gaps = 9/133 (6%)
Query: 2 YFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLA--------TVGVENKTYIGTKFHRIV 53
+FD+ N GRI+ LF PKT +NF L T G + Y G+ FHR+V
Sbjct: 23 HFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTG-KKLCYKGSTFHRVV 81
Query: 54 KNFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMS 113
KNF++QGGD +G+G SIYG F DENF +KH A +SMAN G ++NG QFFIT
Sbjct: 82 KNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTK 141
Query: 114 ATPWLDGHHTVFG 126
P LDG H VFG
Sbjct: 142 PAPHLDGVHVVFG 154
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 108 bits (270), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 76/116 (65%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G V L+ PKT NF TL +G Y T FHR++ NFV+QGGD G+G
Sbjct: 48 GDFEVELYWYHSPKTCLNFYTLCEMGF----YDNTIFHRVIPNFVIQGGDPT-GTGKGGK 102
Query: 73 SIYGDKFDDE-NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
SIYG+ F+DE N ++KHTGAG +SM+N+GPN+N QFFIT++ P LDG HT+F +
Sbjct: 103 SIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFAR 158
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 72/116 (62%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I + LF K+ KTV+NF + G N FHR++K+F++Q GD DG G
Sbjct: 15 GDIHISLFYKECKKTVQNFSVHSINGYYNNCI----FHRVIKHFMVQTGDP-SGDGTGGE 69
Query: 73 SIYGDKFDDENFK-IKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
SI+G++F+DE F + H+ VSMAN GPN+NG QFFIT PWLD HTVFGK
Sbjct: 70 SIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGK 125
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 71/116 (61%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I LF + PKTVENF V N Y G FHRI+K F++Q GD G G
Sbjct: 31 GDIHTKLFPVECPKTVENF----CVHSRNGYYNGHTFHRIIKGFMIQTGDPT-GTGMGGE 85
Query: 73 SIYGDKFDDE-NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
SI+G +F+DE + ++H +SMAN+G N+NG QFFIT+ TPWLD HTVFG+
Sbjct: 86 SIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGR 141
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I + +F + PKT ENF L + Y G FHR +K F++Q GD GRG
Sbjct: 10 GDIKIEVFCERTPKTCENFLALCA----SNYYNGCIFHRNIKGFMVQTGDPT-GTGRGGN 64
Query: 73 SIYGDKFDDENFK-IKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
SI+G KF+DE + +KH G VSMAN+GPN+NG QFFIT P LD +TVFGK
Sbjct: 65 SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGK 120
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I + +F + PKT ENF L + Y G FHR +K F++Q GD GRG
Sbjct: 16 GDIKIEVFCERTPKTCENFLALCA----SNYYNGCIFHRNIKGFMVQTGDPT-GTGRGGN 70
Query: 73 SIYGDKFDDENFK-IKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
SI+G KF+DE + +KH G VSMAN+GPN+NG QFFIT P LD +TVFGK
Sbjct: 71 SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGK 126
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 68/114 (59%), Gaps = 10/114 (8%)
Query: 19 LFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDK 78
LF PK +NF L+ G Y T FH+ +K F++QGGD G+G SIYG
Sbjct: 32 LFCSQCPKACKNFLALSASGY----YKNTIFHKNIKGFIIQGGDPT-GTGKGGESIYGRY 86
Query: 79 FDDENF-KIKHTGAGFVSMANSG----PNSNGCQFFITMSATPWLDGHHTVFGK 127
FDDE + ++K+ G +SMA+ G PN+NG QFFIT S+ P L+G + +FGK
Sbjct: 87 FDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGK 140
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 24 VPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDE- 82
PKT ENF L + Y GT FHR ++NFV+QGGD G S +G F DE
Sbjct: 40 TPKTCENFIRLC----KKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGE-SYWGKPFKDEF 94
Query: 83 NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
+ HTG G +SMANSGPNSN QFFIT + +LD HT+FG+
Sbjct: 95 RPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGR 139
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I + L+ K+ PK NF L Y T FHR+V F++QGGD G G
Sbjct: 34 GDIDIELWSKEAPKACRNFIQLCL----EAYYDNTIFHRVVPGFIVQGGDPT-GTGSGGE 88
Query: 73 SIYGDKFDDE-NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
SIYG F DE + +++ G V+MAN+G + NG QFF T+ L+ HT+FGK
Sbjct: 89 SIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGK 144
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 14/128 (10%)
Query: 11 HEGRIIVGLFGKDVPKTVENFKTLA-----------TVGVENKTYIGTKFHRIVKNFVLQ 59
+ G I + LFG PKTV NF LA + G Y G FHR+++ F++Q
Sbjct: 31 NRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQ 90
Query: 60 GGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLD 119
GGD G + D+F E ++ ++MAN+GP +NG QFFIT+ TP L+
Sbjct: 91 GGDPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLN 147
Query: 120 GHHTVFGK 127
HT+FG+
Sbjct: 148 RRHTIFGE 155
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 18/129 (13%)
Query: 12 EGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDV-------- 63
+G + + L P+ ++F L V K + T FHR ++NF++QGG
Sbjct: 15 QGSLNIELHADMAPRACDSFLRLCAV----KYFDDTIFHRCIRNFMIQGGRAELRQPSKK 70
Query: 64 --VYNDGRGSISIY--GDKFDDE-NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWL 118
V R SIS + G F+DE + ++ H G G +SMAN G +SN +FFIT + L
Sbjct: 71 KEVQQSPR-SISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHL 129
Query: 119 DGHHTVFGK 127
+ HT+FG+
Sbjct: 130 NNKHTIFGR 138
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 22/132 (16%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRG-- 70
G + V L+ ++ P NF L G Y+ T FHR+VK+F++QGGD GRG
Sbjct: 31 GDLDVELWARECPLACRNFVQLCLEGY----YVNTIFHRVVKDFIVQGGDPT-GTGRGGA 85
Query: 71 SISIYGDKFDDENF-KIKHTGAGFVSMANSGPNS--------------NGCQFFITMSAT 115
+ G FD E ++K G V +AN G +S NG QFFIT++
Sbjct: 86 DTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARA 145
Query: 116 PWLDGHHTVFGK 127
L+ +T+FGK
Sbjct: 146 DVLNNAYTLFGK 157
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I + LF P+T NF+ V++ Y GT FHR++ F++QGG + G
Sbjct: 9 GTITLKLFADKAPETAANFEQY----VKDGHYDGTIFHRVIDGFMIQGGG--FEPGMKQK 62
Query: 73 SIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLD 119
S ++ N + + P+S QFFI + +LD
Sbjct: 63 STRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLD 109
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I++ F P+TV+NF G N T FHR++ F++QGG + G
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYCREGFYNNTI----FHRVINGFMIQGGG--FEPGMKQK 62
Query: 73 SIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLD 119
+ ++ N +K+T P+S QFFI + +L+
Sbjct: 63 ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLN 109
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I++ F P+TV+NF G N T FHR++ F++QGG + G
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYCREGFYNNTI----FHRVINGFMIQGGG--FEPGMKQK 62
Query: 73 SIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLD 119
+ ++ N +K+T P+S QFFI + +L+
Sbjct: 63 ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLN 109
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I + L PKTVENF G Y GT FHR++ F++QGG + G
Sbjct: 13 GVIKLELDEAKAPKTVENFLNYVKKG----HYDGTIFHRVINGFMIQGGG--FEPGLKQK 66
Query: 73 SIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLD 119
++ N +K+ + P+S QFFI ++ +L+
Sbjct: 67 PTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLN 113
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 16/94 (17%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLA---TVGVE-------------NKTY 44
+Y D+ N GR+ + LF P VENF L T V N+TY
Sbjct: 17 VYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTY 76
Query: 45 IGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDK 78
G KFH ++ N + GD+ ++G + ++Y D+
Sbjct: 77 EGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDE 110
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 8/115 (6%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I + L + P +V+NF G Y T FHR++ F++QGG +
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVNSGF----YNNTTFHRVIPGFMIQGGGFTEQMQQKKP 69
Query: 73 SIYGDKFDDENFKIKHTGAGFVSMANSG-PNSNGCQFFITMSATPWLDGHHTVFG 126
+ D + G ++MA + +S QFFI ++ +LD FG
Sbjct: 70 NPPIKNEADNGLR---NTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFG 121
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 8/115 (6%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I + L + P +V+NF G Y T FHR++ F++QGG +
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVNSGF----YNNTTFHRVIPGFMIQGGGFTEQMQQKKP 69
Query: 73 SIYGDKFDDENFKIKHTGAGFVSMANSG-PNSNGCQFFITMSATPWLDGHHTVFG 126
+ D + G ++MA + +S QFFI ++ +LD FG
Sbjct: 70 NPPIKNEADNGLR---NTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFG 121
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 28.9 bits (63), Expect = 0.84, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 12 EGRIIVGLFGKDVPKTVENFKTL---ATVGVENKTYIGTKF 49
EG I+ FG + PK +EN K L T+ + GTKF
Sbjct: 210 EGFILAKKFGNNQPKRIENAKILIANTTLDTDKVKIFGTKF 250
>pdb|4HZ4|A Chain A, Crystal Structure Of Glutathione S-Transferase B4xh91
(Target Efi- 501787) From Actinobacillus
Pleuropneumoniae
Length = 217
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 50 HRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDEN 83
H + K VLQ GD+V +G I D++D EN
Sbjct: 50 HPLGKAPVLQDGDLVLAEGNAIIQHLLDRYDTEN 83
>pdb|2CW3|A Chain A, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
pdb|2CW3|B Chain B, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
Length = 280
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 4 DLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVEN 41
D +YN H+G I L +P++ N K+L T+G +
Sbjct: 101 DFHYNKHHQGYIQKLLDATGLPESRINLKSLVTLGPDR 138
>pdb|3B4N|A Chain A, Crystal Structure Analysis Of Pectate Lyase Peli From
Erwinia Chrysanthemi
pdb|3B4N|B Chain B, Crystal Structure Analysis Of Pectate Lyase Peli From
Erwinia Chrysanthemi
pdb|3B8Y|A Chain A, Crystal Structure Of Pectate Lyase Peli From Erwinia
Chrysanthemi In Complex With Tetragalacturonic Acid
pdb|3B8Y|B Chain B, Crystal Structure Of Pectate Lyase Peli From Erwinia
Chrysanthemi In Complex With Tetragalacturonic Acid
Length = 344
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 68 GRGSISIYGDKFDDENFKIKHTG 90
G+GS YG+K+D N K+ +G
Sbjct: 318 GQGSTEKYGEKWDTTNCKVSRSG 340
>pdb|1Q7M|A Chain A, Cobalamin-Dependent Methionine Synthase (Meth) From
Thermotoga Maritima (Oxidized, Monoclinic)
pdb|1Q7M|B Chain B, Cobalamin-Dependent Methionine Synthase (Meth) From
Thermotoga Maritima (Oxidized, Monoclinic)
pdb|1Q7Q|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From T.
Maritima (Oxidized, Orthorhombic)
pdb|1Q7Q|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From T.
Maritima (Oxidized, Orthorhombic)
pdb|1Q7Z|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex)
pdb|1Q7Z|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex)
pdb|1Q8J|A Chain A, Cobalamin-dependent Methionine Synthase (1-566) From
Thermotoga Maritima (cd2+, Hcy, Methyltetrahydrofolate
Complex)
pdb|1Q8J|B Chain B, Cobalamin-dependent Methionine Synthase (1-566) From
Thermotoga Maritima (cd2+, Hcy, Methyltetrahydrofolate
Complex)
pdb|3BOF|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+ And Homocysteine
pdb|3BOF|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+ And Homocysteine
pdb|3BOL|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+
pdb|3BOL|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+
Length = 566
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 13 GRIIVGLFGKDVPKTVENFK 32
G +IV L GKDVPK+ E K
Sbjct: 432 GTLIVLLMGKDVPKSFEERK 451
>pdb|1P31|A Chain A, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
Ligase (Murc) From Haemophilus Influenzae
pdb|1P31|B Chain B, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
Ligase (Murc) From Haemophilus Influenzae
pdb|1P3D|A Chain A, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
Ligase (Murc) In Complex With Uma And Anp.
pdb|1P3D|B Chain B, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
Ligase (Murc) In Complex With Uma And Anp
Length = 475
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 16 IVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSIS 73
IVG K + +++ N + + V + + +G +I+ Q GD++ G GS+S
Sbjct: 411 IVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQII-----QDGDLILAQGAGSVS 463
>pdb|1GQQ|A Chain A, Murc - Crystal Structure Of The Apo-Enzyme From
Haemophilus Influenzae
pdb|1GQQ|B Chain B, Murc - Crystal Structure Of The Apo-Enzyme From
Haemophilus Influenzae
pdb|1GQY|A Chain A, Murc- Crystal Structure Of The Enzyme From Haemophilus
Influenzae Complexed With Amppcp
pdb|1GQY|B Chain B, Murc- Crystal Structure Of The Enzyme From Haemophilus
Influenzae Complexed With Amppcp
Length = 475
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 16 IVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSIS 73
IVG K + +++ N + + V + + +G +I+ Q GD++ G GS+S
Sbjct: 411 IVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQII-----QDGDLILAQGAGSVS 463
>pdb|2V5I|A Chain A, Structure Of The Receptor-binding Protein Of Bacteriophage
Det7: A Podoviral Tailspike In A Myovirus
Length = 559
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%)
Query: 62 DVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWL 118
D+ YN G + K N K K G G + N GP S Q F+ TPW+
Sbjct: 43 DINYNFTDGESVDFXGKILTINCKAKFIGDGALIFNNMGPGSVINQPFMESKTTPWV 99
>pdb|3ECY|A Chain A, Crystal Structural Analysis Of Drosophila Melanogaster
Dutpase
pdb|3ECY|B Chain B, Crystal Structural Analysis Of Drosophila Melanogaster
Dutpase
Length = 160
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 32 KTLATVGVENKTY--IGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKH 88
KT V V +Y + + VKNF+ G VV D RG++ + D +F++KH
Sbjct: 63 KTDLQVQVPEGSYGRVAPRSGLAVKNFIDVGAGVVDEDYRGNLGVVLFNHSDVDFEVKH 121
>pdb|3B90|A Chain A, Crystal Structure Of The Catalytic Domain Of Pectate Lyase
Peli From Erwinia Chrysanthemi
pdb|3B90|B Chain B, Crystal Structure Of The Catalytic Domain Of Pectate Lyase
Peli From Erwinia Chrysanthemi
Length = 226
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 68 GRGSISIYGDKFDDENFKIKHTG 90
G+GS YG+K+D N K+ +G
Sbjct: 200 GQGSTEKYGEKWDTTNCKVSRSG 222
>pdb|1Q85|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex, Se-Met)
pdb|1Q85|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex, Se-Met)
pdb|1Q8A|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+:l-Hcy Complex, Se-Met)
pdb|1Q8A|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+:l-Hcy Complex, Se-Met)
Length = 566
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 13 GRIIVGLFGKDVPKTVENFK 32
G +IV L GKDVPK+ E K
Sbjct: 432 GTLIVLLXGKDVPKSFEERK 451
>pdb|2ASS|C Chain C, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|C Chain C, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A
P27 Peptide
Length = 69
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 75 YGDKFDDENFKIKHT 89
Y DK+DDE F+ +H
Sbjct: 4 YSDKYDDEEFEYRHV 18
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.142 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,510,764
Number of Sequences: 62578
Number of extensions: 193818
Number of successful extensions: 545
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 364
Number of HSP's gapped (non-prelim): 93
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)