Query psy3726
Match_columns 127
No_of_seqs 138 out of 1146
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 23:59:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546|consensus 100.0 9.1E-55 2E-59 324.9 9.6 126 1-127 11-144 (372)
2 KOG0880|consensus 100.0 7.8E-52 1.7E-56 287.1 12.2 127 1-127 42-168 (217)
3 KOG0879|consensus 100.0 5.4E-50 1.2E-54 263.9 7.9 127 1-127 13-143 (177)
4 COG0652 PpiB Peptidyl-prolyl c 100.0 2.1E-45 4.4E-50 251.3 10.5 115 6-127 2-119 (158)
5 KOG0881|consensus 100.0 1.3E-45 2.8E-50 240.6 5.4 116 7-127 13-129 (164)
6 cd01926 cyclophilin_ABH_like c 100.0 7.7E-44 1.7E-48 246.9 13.8 126 1-127 3-133 (164)
7 PLN03149 peptidyl-prolyl isome 100.0 1.7E-43 3.7E-48 249.3 12.7 127 1-127 21-151 (186)
8 KOG0111|consensus 100.0 7.8E-44 1.7E-48 251.6 6.6 126 1-127 139-264 (298)
9 PTZ00060 cyclophilin; Provisio 100.0 1.9E-42 4.1E-47 243.6 13.2 127 1-127 18-149 (183)
10 PTZ00221 cyclophilin; Provisio 100.0 3.8E-42 8.3E-47 250.3 13.3 123 1-127 55-185 (249)
11 cd01927 cyclophilin_WD40 cyclo 100.0 5.6E-42 1.2E-46 234.1 11.7 115 8-127 2-117 (148)
12 cd01922 cyclophilin_SpCYP2_lik 100.0 1.5E-41 3.2E-46 231.5 11.7 115 8-127 2-117 (146)
13 cd01928 Cyclophilin_PPIL3_like 100.0 6.6E-41 1.4E-45 229.9 11.4 115 8-127 5-120 (153)
14 cd01923 cyclophilin_RING cyclo 100.0 1.5E-40 3.3E-45 229.4 12.0 115 8-127 4-119 (159)
15 cd01925 cyclophilin_CeCYP16-li 100.0 5.1E-40 1.1E-44 229.1 11.6 116 7-127 9-125 (171)
16 cd01921 cyclophilin_RRM cyclop 100.0 1.6E-39 3.6E-44 225.6 11.7 115 8-127 2-125 (166)
17 KOG0882|consensus 100.0 1.7E-40 3.7E-45 253.6 6.7 118 5-127 406-524 (558)
18 KOG0883|consensus 100.0 2.2E-40 4.8E-45 249.3 5.9 114 9-127 283-397 (518)
19 KOG0884|consensus 100.0 4.7E-39 1E-43 208.8 7.2 114 9-127 6-120 (161)
20 cd01920 cyclophilin_EcCYP_like 100.0 1.2E-37 2.6E-42 214.1 11.5 112 9-127 3-120 (155)
21 KOG0885|consensus 100.0 2.3E-38 5E-43 237.1 7.2 116 7-127 16-132 (439)
22 KOG0865|consensus 100.0 3.7E-38 7.9E-43 217.2 7.3 126 1-127 6-134 (167)
23 cd01924 cyclophilin_TLP40_like 100.0 2.8E-37 6E-42 216.1 11.7 116 8-127 2-151 (176)
24 PRK10791 peptidyl-prolyl cis-t 100.0 3.2E-37 6.9E-42 213.7 11.1 113 8-127 4-125 (164)
25 PRK10903 peptidyl-prolyl cis-t 100.0 6.6E-37 1.4E-41 216.4 11.4 113 8-127 33-151 (190)
26 cd00317 cyclophilin cyclophili 100.0 1.6E-35 3.4E-40 201.4 11.8 113 9-127 3-116 (146)
27 PF00160 Pro_isomerase: Cyclop 100.0 1.7E-34 3.7E-39 198.0 12.4 119 2-127 1-124 (155)
28 KOG0415|consensus 100.0 3.4E-32 7.4E-37 203.3 8.7 116 7-127 4-128 (479)
29 KOG0882|consensus 96.1 0.0061 1.3E-07 48.4 3.5 109 14-127 113-228 (558)
30 PRK00969 hypothetical protein; 94.9 0.15 3.3E-06 41.1 7.5 75 14-100 379-453 (508)
31 TIGR03268 methan_mark_3 putati 94.5 0.22 4.8E-06 40.1 7.4 75 14-100 376-450 (503)
32 COG4070 Predicted peptidyl-pro 91.2 0.7 1.5E-05 36.5 5.7 40 14-55 377-416 (512)
33 PRK00969 hypothetical protein; 89.6 5.2 0.00011 32.6 9.5 89 14-127 205-293 (508)
34 TIGR03268 methan_mark_3 putati 89.0 6 0.00013 32.2 9.4 90 13-127 201-290 (503)
35 PF12903 DUF3830: Protein of u 80.8 1.7 3.8E-05 29.6 2.6 35 14-55 9-43 (147)
36 COG4070 Predicted peptidyl-pro 79.7 5.2 0.00011 31.8 5.2 27 12-39 202-228 (512)
37 PF06138 Chordopox_E11: Chordo 75.2 21 0.00046 23.8 6.3 44 9-55 9-61 (130)
38 PHA03001 putative virion core 44.9 93 0.002 20.8 6.3 44 9-55 9-60 (132)
39 PF11314 DUF3117: Protein of u 43.4 6.7 0.00015 21.6 -0.3 15 12-26 28-42 (51)
40 KOG3953|consensus 32.1 78 0.0017 23.4 3.6 43 3-45 73-116 (242)
41 PF09383 NIL: NIL domain; Int 30.9 79 0.0017 18.3 3.0 28 7-36 40-67 (76)
42 COG5429 Uncharacterized secret 27.1 80 0.0017 23.5 3.0 25 14-38 42-70 (261)
43 PRK14452 acylphosphatase; Prov 27.0 1.1E+02 0.0024 19.6 3.4 39 7-52 52-90 (107)
44 PF13051 DUF3912: Protein of u 26.2 84 0.0018 18.0 2.3 25 91-115 17-41 (68)
45 COG0219 CspR Predicted rRNA me 25.5 1.3E+02 0.0028 20.8 3.6 33 15-54 3-35 (155)
46 PF13496 DUF4120: Domain of un 24.9 32 0.0007 21.3 0.6 17 11-27 37-53 (95)
47 PF00708 Acylphosphatase: Acyl 23.9 80 0.0017 19.1 2.2 39 7-52 36-74 (91)
48 PRK14420 acylphosphatase; Prov 22.1 66 0.0014 19.7 1.6 30 7-38 34-63 (91)
49 PRK14443 acylphosphatase; Prov 21.9 1.4E+02 0.003 18.6 3.0 40 7-52 36-75 (93)
50 PRK14426 acylphosphatase; Prov 21.9 1.8E+02 0.0038 17.9 3.5 30 7-38 36-65 (92)
51 COG1765 Predicted redox protei 20.5 91 0.002 20.7 2.1 35 14-55 91-125 (137)
52 KOG3422|consensus 20.4 1E+02 0.0022 22.4 2.4 33 7-39 135-167 (221)
No 1
>KOG0546|consensus
Probab=100.00 E-value=9.1e-55 Score=324.86 Aligned_cols=126 Identities=53% Similarity=0.947 Sum_probs=122.6
Q ss_pred CeEEeEECCeeeEEEEEEEcCCCCcchHHhHHhhhccCCcc--------ccccccEEEEEecCeEEeeCcccccCCCCcc
Q psy3726 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVEN--------KTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72 (127)
Q Consensus 1 v~~di~i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~--------~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~ 72 (127)
|||||+|++.++|||+||||.|.||+||+||+.||+|. +| .+|+|+.||||+++|||||||++.++|+|+.
T Consensus 11 ~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE-~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGe 89 (372)
T KOG0546|consen 11 VFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGE-KGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGE 89 (372)
T ss_pred EEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccc-cCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCcc
Confidence 79999999999999999999999999999999999987 43 3799999999999999999999999999999
Q ss_pred cccCCCCCCCccccCcccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 73 SIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 73 ~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
||||..|+||++.++|+++++|||||.|||+||||||||+.++|||||+|+||||
T Consensus 90 SIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGq 144 (372)
T KOG0546|consen 90 SIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQ 144 (372)
T ss_pred cccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEee
Confidence 9999999999999999999999999999999999999999999999999999996
No 2
>KOG0880|consensus
Probab=100.00 E-value=7.8e-52 Score=287.12 Aligned_cols=127 Identities=60% Similarity=1.073 Sum_probs=123.8
Q ss_pred CeEEeEECCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCC
Q psy3726 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFD 80 (127)
Q Consensus 1 v~~di~i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~ 80 (127)
|||||.+.+...|||+|+||++.+|+||+||.+||+++-++.+|.+++||||+|+|||||||++.+++.++.++||..++
T Consensus 42 V~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~F~ 121 (217)
T KOG0880|consen 42 VYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEKFP 121 (217)
T ss_pred EEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEeecCCCC
Confidence 79999999999999999999999999999999999954488999999999999999999999999999999999999999
Q ss_pred CCccccCcccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 81 DENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 81 ~e~~~~~~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
+|++.++|+++|.|||||.|||+||||||||+...|||||+|+||||
T Consensus 122 DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGq 168 (217)
T KOG0880|consen 122 DENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQ 168 (217)
T ss_pred CccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEee
Confidence 99999999999999999999999999999999999999999999997
No 3
>KOG0879|consensus
Probab=100.00 E-value=5.4e-50 Score=263.86 Aligned_cols=127 Identities=50% Similarity=0.911 Sum_probs=123.9
Q ss_pred CeEEeEECCeeeEEEEEEEcCCCCcchHHhHHhhhccCC----ccccccccEEEEEecCeEEeeCcccccCCCCcccccC
Q psy3726 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGV----ENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYG 76 (127)
Q Consensus 1 v~~di~i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~----~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~ 76 (127)
|||||++++.++|||.||||.|.+|+|++||.+.|++.+ .+.+|+++.||||+++|||||||+..+++++..+||+
T Consensus 13 VF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~ 92 (177)
T KOG0879|consen 13 VFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYG 92 (177)
T ss_pred EEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcC
Confidence 799999999999999999999999999999999999987 4668999999999999999999999999999999999
Q ss_pred CCCCCCccccCcccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 77 DKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 77 ~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
.++++|++.++|+.+|+|||||++++++|+|||||..+..||||||+||||
T Consensus 93 ~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGr 143 (177)
T KOG0879|consen 93 STFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGR 143 (177)
T ss_pred CCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEee
Confidence 999999999999999999999999999999999999999999999999997
No 4
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-45 Score=251.34 Aligned_cols=115 Identities=47% Similarity=0.795 Sum_probs=107.6
Q ss_pred EECCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCccc
Q psy3726 6 NYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDENFK 85 (127)
Q Consensus 6 ~i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~ 85 (127)
.+..|+.|+|+||||++.||+||+||++||+.++ |+|+.||||+|+|||||||+..+.+.+++ +.++++|.+.
T Consensus 2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~----Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~~~ 74 (158)
T COG0652 2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGF----YDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDENFA 74 (158)
T ss_pred ceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCC----CCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcccccc
Confidence 4568999999999999999999999999999999 99999999999999999999977677666 4889999988
Q ss_pred cCccc--ceEEEeecCC-CCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 86 IKHTG--AGFVSMANSG-PNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 86 ~~~~~--~G~l~~~~~~-~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
..|.+ +|+|||||.+ |++++||||||+.++||||++|+||||
T Consensus 75 ~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~ 119 (158)
T COG0652 75 LNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQ 119 (158)
T ss_pred cccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEE
Confidence 88887 9999999999 999999999999999999999999996
No 5
>KOG0881|consensus
Probab=100.00 E-value=1.3e-45 Score=240.59 Aligned_cols=116 Identities=55% Similarity=0.978 Sum_probs=111.6
Q ss_pred ECCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCc-cc
Q psy3726 7 YNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDEN-FK 85 (127)
Q Consensus 7 i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~-~~ 85 (127)
.-+|++|.|++|||-+.||+||+||.+|++.+| |+|..||||+++|||||||++ +++.++.|+||..+++|. ..
T Consensus 13 ~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgY----Yn~v~FHRii~DFmiQGGDPT-GTGRGGaSIYG~kF~DEi~~d 87 (164)
T KOG0881|consen 13 TLETSMGKITLELYWKHAPRTCQNFAELARRGY----YNGVIFHRIIKDFMIQGGDPT-GTGRGGASIYGDKFEDEIHSD 87 (164)
T ss_pred EEeecccceehhhhhhcCcHHHHHHHHHHhccc----ccceeeeehhhhheeecCCCC-CCCCCccccccchhhhhhhhh
Confidence 347899999999999999999999999999999 999999999999999999999 889999999999999996 67
Q ss_pred cCcccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 86 IKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 86 ~~~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
++|..+|.|+|||.+||+++|||||||++.+||||||++|||
T Consensus 88 LkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGR 129 (164)
T KOG0881|consen 88 LKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGR 129 (164)
T ss_pred hcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehh
Confidence 999999999999999999999999999999999999999997
No 6
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=7.7e-44 Score=246.95 Aligned_cols=126 Identities=56% Similarity=1.025 Sum_probs=117.4
Q ss_pred CeEEeEECCeeeEEEEEEEcCCCCcchHHhHHhhhccCCcc-----ccccccEEEEEecCeEEeeCcccccCCCCccccc
Q psy3726 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVEN-----KTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIY 75 (127)
Q Consensus 1 v~~di~i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~-----~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~ 75 (127)
|||||+++++++|+|+||||.+.||++|+||++||++. ++ .+|+++.||||+|+++||+||+...++.++.+++
T Consensus 3 v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~-~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~ 81 (164)
T cd01926 3 VFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGE-KGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIY 81 (164)
T ss_pred EEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhccc-CCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCccc
Confidence 79999999999999999999999999999999999864 23 3499999999999999999998867777888899
Q ss_pred CCCCCCCccccCcccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 76 GDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 76 ~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
+..+++|...++|.++|+|+|++.++++++|||||+++++|+||++|+||||
T Consensus 82 g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~ 133 (164)
T cd01926 82 GEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGK 133 (164)
T ss_pred CCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEE
Confidence 9999999888999999999999999999999999999999999999999996
No 7
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=1.7e-43 Score=249.30 Aligned_cols=127 Identities=53% Similarity=1.005 Sum_probs=118.1
Q ss_pred CeEEeEECCeeeEEEEEEEcCCCCcchHHhHHhhhccCCc----cccccccEEEEEecCeEEeeCcccccCCCCcccccC
Q psy3726 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVE----NKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYG 76 (127)
Q Consensus 1 v~~di~i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~----~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~ 76 (127)
|||||++++++.|||+||||.+.||+||+||++||++++. ..+|+++.||||+|+++||+||+..+.+.++.++++
T Consensus 21 v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g 100 (186)
T PLN03149 21 VFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYG 100 (186)
T ss_pred EEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccC
Confidence 6999999999999999999999999999999999987541 235999999999999999999987777888888999
Q ss_pred CCCCCCccccCcccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 77 DKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 77 ~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
..+++|.+.++|.++|+|+|++.++++++||||||++++|+||++|+||||
T Consensus 101 ~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~ 151 (186)
T PLN03149 101 SKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGR 151 (186)
T ss_pred CccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEE
Confidence 999999888999999999999999999999999999999999999999996
No 8
>KOG0111|consensus
Probab=100.00 E-value=7.8e-44 Score=251.64 Aligned_cols=126 Identities=51% Similarity=0.840 Sum_probs=124.2
Q ss_pred CeEEeEECCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCC
Q psy3726 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFD 80 (127)
Q Consensus 1 v~~di~i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~ 80 (127)
||+||.|.+...|||+++|..|..|+|++||..||++. ++++|+|++||||+|.||+||||++.+++.++.||||..+.
T Consensus 139 v~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge-~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfd 217 (298)
T KOG0111|consen 139 VYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGE-AGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFD 217 (298)
T ss_pred hhhheeecccccceEEEeecccCChhhhhhhhhhcccc-CccCccccchhhhhhhhhccCCccccCCCCCCccccccccc
Confidence 79999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCccccCcccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 81 DENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 81 ~e~~~~~~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
+|++.++|..+|+|||+|+++|++|||||||+....||||+|+|||.
T Consensus 218 denf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfgh 264 (298)
T KOG0111|consen 218 DENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGH 264 (298)
T ss_pred ccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEee
Confidence 99999999999999999999999999999999999999999999994
No 9
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=1.9e-42 Score=243.59 Aligned_cols=127 Identities=52% Similarity=0.954 Sum_probs=117.1
Q ss_pred CeEEeEECCeeeEEEEEEEcCCCCcchHHhHHhhhccCC-----ccccccccEEEEEecCeEEeeCcccccCCCCccccc
Q psy3726 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGV-----ENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIY 75 (127)
Q Consensus 1 v~~di~i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~-----~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~ 75 (127)
|||||++++++.|+|+||||.+.||++|+||++||++.. +..+|+++.||||+|+++||+||+....+.++.+++
T Consensus 18 v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~ 97 (183)
T PTZ00060 18 VFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIY 97 (183)
T ss_pred EEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCCccc
Confidence 699999999999999999999999999999999998531 123499999999999999999998877777888889
Q ss_pred CCCCCCCccccCcccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 76 GDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 76 ~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
+..+++|...++|.++|+|+|++.++++++||||||++++|+||++|+||||
T Consensus 98 g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~ 149 (183)
T PTZ00060 98 GRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGK 149 (183)
T ss_pred ccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEE
Confidence 9999999888999999999999999999999999999999999999999996
No 10
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=3.8e-42 Score=250.29 Aligned_cols=123 Identities=33% Similarity=0.568 Sum_probs=112.0
Q ss_pred CeEEeEECCeeeEEEEEEEcCCCCcchHHhHHhhhccCCc-------cccccccEEEEEecC-eEEeeCcccccCCCCcc
Q psy3726 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVE-------NKTYIGTKFHRIVKN-FVLQGGDVVYNDGRGSI 72 (127)
Q Consensus 1 v~~di~i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~-------~~~Y~g~~f~rv~~~-~~iq~Gd~~~~~~~~~~ 72 (127)
|||||++++.++|+|+||||.+.||+||+||++||++... ...|+++.||||+++ ++||+||+.. .+.
T Consensus 55 Vfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~----~g~ 130 (249)
T PTZ00221 55 AFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS----FNV 130 (249)
T ss_pred EEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC----CCc
Confidence 7999999999999999999999999999999999987521 124999999999986 8999999863 244
Q ss_pred cccCCCCCCCccccCcccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 73 SIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 73 ~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
+++|..+++|.+.++|+++|+|+|++.++++++||||||+.++|+||++|+||||
T Consensus 131 s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGr 185 (249)
T PTZ00221 131 SSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGK 185 (249)
T ss_pred cCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEE
Confidence 6778899999999999999999999999999999999999999999999999996
No 11
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=5.6e-42 Score=234.07 Aligned_cols=115 Identities=52% Similarity=0.854 Sum_probs=107.7
Q ss_pred CCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCcc-cc
Q psy3726 8 NGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDENF-KI 86 (127)
Q Consensus 8 ~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~-~~ 86 (127)
-.|++|+|+||||.+.||++|+||++||+.++ |+++.||||+|++++|+||+. +.+.++.++++..+++|.. .+
T Consensus 2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~----Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~ 76 (148)
T cd01927 2 IHTTKGDIHIRLFPEEAPKTVENFTTHARNGY----YNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEFSPSL 76 (148)
T ss_pred eEeccccEEEEEeCCCCcHHHHHHHHHhhcCC----cCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCcccccccccc
Confidence 36899999999999999999999999999999 999999999999999999986 5667778888989999875 78
Q ss_pred CcccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 87 KHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 87 ~~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
+|.++|+|+|++.++++++|||||+++++|+||++|+||||
T Consensus 77 ~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~ 117 (148)
T cd01927 77 KHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGR 117 (148)
T ss_pred CcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEE
Confidence 89999999999999999999999999999999999999996
No 12
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1.5e-41 Score=231.46 Aligned_cols=115 Identities=56% Similarity=0.987 Sum_probs=107.0
Q ss_pred CCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCc-ccc
Q psy3726 8 NGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDEN-FKI 86 (127)
Q Consensus 8 ~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~-~~~ 86 (127)
-.|+.|+|+||||.+.||++|+||++||+.++ |+++.||||+|++++|+||+. +.+.++.++++.++++|. ..+
T Consensus 2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~----Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~~~~~ 76 (146)
T cd01922 2 LETTMGEITLELYWNHAPKTCKNFYELAKRGY----YNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEIHPEL 76 (146)
T ss_pred eEeccccEEEEEcCCCCcHHHHHHHHHHhcCC----cCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccccccCc
Confidence 36899999999999999999999999999999 999999999999999999986 456667788899999885 578
Q ss_pred CcccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 87 KHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 87 ~~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
+|.++|+|+|++.++++++|||||+++++|+||++|+||||
T Consensus 77 ~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~ 117 (146)
T cd01922 77 KHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGR 117 (146)
T ss_pred CCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEE
Confidence 99999999999999999999999999999999999999996
No 13
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=6.6e-41 Score=229.87 Aligned_cols=115 Identities=50% Similarity=0.815 Sum_probs=107.0
Q ss_pred CCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCcc-cc
Q psy3726 8 NGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDENF-KI 86 (127)
Q Consensus 8 ~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~-~~ 86 (127)
-+|+.|+|+||||++.||+||+||++||++++ |+++.||||+|++++|+||+. +++.++.++++.++++|.. .+
T Consensus 5 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~----Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~ 79 (153)
T cd01928 5 LHTNLGDIKIELFCDDCPKACENFLALCASGY----YNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEFRETL 79 (153)
T ss_pred EEEccccEEEEEcCCCCcHHHHHHHHHHhcCc----cCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCccccccccCC
Confidence 36899999999999999999999999999999 999999999999999999987 5566777888999998874 67
Q ss_pred CcccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 87 KHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 87 ~~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
+|+++|+|+|++.++++++|||||+++++|+||++|+||||
T Consensus 80 ~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~ 120 (153)
T cd01928 80 KHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGK 120 (153)
T ss_pred CcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEE
Confidence 88899999999999999999999999999999999999996
No 14
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=1.5e-40 Score=229.38 Aligned_cols=115 Identities=49% Similarity=0.817 Sum_probs=107.5
Q ss_pred CCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCc-ccc
Q psy3726 8 NGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDEN-FKI 86 (127)
Q Consensus 8 ~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~-~~~ 86 (127)
-.|++|+|+||||++.||+||+||++||+.++ |+++.||||+|++++|+||+. +.+.++.++++.++++|. ..+
T Consensus 4 ~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~----Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~~~~~ 78 (159)
T cd01923 4 LHTNKGDLNLELHCDKAPKACENFIKLCKKGY----YDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFKPNL 78 (159)
T ss_pred EEEccccEEEEEeCCCChHHHHHHHHHHhcCc----cCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCcccccCc
Confidence 45899999999999999999999999999999 999999999999999999987 566778888999999885 467
Q ss_pred CcccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 87 KHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 87 ~~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
+|+++|+|+|++.++++++||||||++++|+||++|+||||
T Consensus 79 ~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~ 119 (159)
T cd01923 79 SHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGR 119 (159)
T ss_pred CcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEE
Confidence 89999999999999999999999999999999999999996
No 15
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=5.1e-40 Score=229.13 Aligned_cols=116 Identities=42% Similarity=0.731 Sum_probs=107.8
Q ss_pred ECCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCcc-c
Q psy3726 7 YNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDENF-K 85 (127)
Q Consensus 7 i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~-~ 85 (127)
+..|++|+|+||||.+.||+||+||++||+.++ |+++.||||+|++++|+||+. +.+.++.++++.++++|.. .
T Consensus 9 ~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~----Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~s~~g~~~~~E~~~~ 83 (171)
T cd01925 9 ILKTTAGDIDIELWSKEAPKACRNFIQLCLEGY----YDNTIFHRVVPGFIIQGGDPT-GTGTGGESIYGEPFKDEFHSR 83 (171)
T ss_pred EEEEccccEEEEEeCCCChHHHHHHHHHHhcCC----CCCCEEEEEcCCcEEEccccC-CCCccCcccCCCccCcccccC
Confidence 347899999999999999999999999999999 999999999999999999987 5667778899999998864 5
Q ss_pred cCcccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 86 IKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 86 ~~~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
++|+++|+|+|++.++++++|||||+++++|+||++|+||||
T Consensus 84 ~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~ 125 (171)
T cd01925 84 LRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGK 125 (171)
T ss_pred cCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEE
Confidence 788999999999999999999999999999999999999996
No 16
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=1.6e-39 Score=225.64 Aligned_cols=115 Identities=38% Similarity=0.607 Sum_probs=101.7
Q ss_pred CCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccC-------CCCC
Q psy3726 8 NGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYG-------DKFD 80 (127)
Q Consensus 8 ~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~-------~~~~ 80 (127)
-.|+.|+|+||||.+.||+||+||++||+.++ |++++||||+|+++||+||+. ..+.++.++++ ..++
T Consensus 2 l~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~----Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~~~~~ 76 (166)
T cd01921 2 LETTLGDLVIDLFTDECPLACLNFLKLCKLKY----YNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQARFFE 76 (166)
T ss_pred cEeccCCEEEEEcCCCCCHHHHHHHHHHhcCC----cCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccCcccC
Confidence 36899999999999999999999999999999 999999999999999999987 44555555554 3455
Q ss_pred CCc-cccCcccceEEEeecCCCCCCcceEEEEcCC-CCCCCCCCeEecC
Q psy3726 81 DEN-FKIKHTGAGFVSMANSGPNSNGCQFFITMSA-TPWLDGHHTVFGK 127 (127)
Q Consensus 81 ~e~-~~~~~~~~G~l~~~~~~~~~~~sqFfItl~~-~~~ld~~~~vFG~ 127 (127)
+|. ..++|+++|+|+|++.++++++||||||+++ +|+||++|+||||
T Consensus 77 ~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~ 125 (166)
T cd01921 77 PEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQ 125 (166)
T ss_pred cccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEE
Confidence 665 4778999999999999999999999999986 7999999999996
No 17
>KOG0882|consensus
Probab=100.00 E-value=1.7e-40 Score=253.61 Aligned_cols=118 Identities=49% Similarity=0.829 Sum_probs=113.7
Q ss_pred eEECCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCc-
Q psy3726 5 LNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDEN- 83 (127)
Q Consensus 5 i~i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~- 83 (127)
-+|.-|+.|+|.|.||+++||+||+||...|+.|| |+|..||||+++||||+|||. ++|.|+.||||+.+++|.
T Consensus 406 ~aiihtt~gdi~~kl~p~ecpktvenf~th~rngy----y~~~~fhriik~fmiqtgdp~-g~gtggesiwg~dfedefh 480 (558)
T KOG0882|consen 406 AAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGY----YDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDFEDEFH 480 (558)
T ss_pred ceEEEecccceEEEecccccchhhhhhhccccCcc----ccCcchHHhhhhheeecCCCC-CCCCCCcccccccchhhcC
Confidence 35678999999999999999999999999999999 999999999999999999998 889999999999999997
Q ss_pred cccCcccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 84 FKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 84 ~~~~~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
..++|+++-+|||||.|||+||||||||+.+.|||||||+||||
T Consensus 481 ~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgr 524 (558)
T KOG0882|consen 481 PNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGR 524 (558)
T ss_pred cccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEE
Confidence 67999999999999999999999999999999999999999997
No 18
>KOG0883|consensus
Probab=100.00 E-value=2.2e-40 Score=249.29 Aligned_cols=114 Identities=46% Similarity=0.786 Sum_probs=110.9
Q ss_pred CeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCc-cccC
Q psy3726 9 GFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDEN-FKIK 87 (127)
Q Consensus 9 ~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~-~~~~ 87 (127)
.|+.|+|-|||++|.+|++|+||++||+.+| |+|+.|||.|.+||||||||+ +.|.|+.||||.+|.+|. ..+.
T Consensus 283 ~Tn~G~lNlELhcd~~P~aceNFI~lc~~gY----Ynnt~FHRsIrnFmiQGGDPT-GTG~GGeSiWgKpFkDEf~~~l~ 357 (518)
T KOG0883|consen 283 VTNHGPLNLELHCDYAPRACENFITLCKNGY----YNNTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFCSNLS 357 (518)
T ss_pred eccCCceeeEeecCcchHHHHHHHHHHhccc----ccchHHHHHHHHHeeeCCCCC-CCCCCCccccCCccccccCCCCC
Confidence 5889999999999999999999999999999 999999999999999999999 889999999999999997 6799
Q ss_pred cccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 88 HTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 88 ~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
|+.||+|||||+|||+|||||||+..++.+||++|+||||
T Consensus 358 H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGr 397 (518)
T KOG0883|consen 358 HDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGR 397 (518)
T ss_pred cCCcceEeeccCCCCCCCceEEEEecchhhccccceeeee
Confidence 9999999999999999999999999999999999999997
No 19
>KOG0884|consensus
Probab=100.00 E-value=4.7e-39 Score=208.77 Aligned_cols=114 Identities=49% Similarity=0.762 Sum_probs=109.3
Q ss_pred CeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCc-cccC
Q psy3726 9 GFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDEN-FKIK 87 (127)
Q Consensus 9 ~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~-~~~~ 87 (127)
-|..|+|.||||.+.+|++|+||+.||...| |+++.|||-+|+|++|+||++ ..+.|+.||||.++++|. .-++
T Consensus 6 ht~~gdikiev~~e~tpktce~~l~~~~~~~----~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~~~~lk 80 (161)
T KOG0884|consen 6 HTDVGDIKIEVFCERTPKTCENFLALCASDY----YNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEYSEYLK 80 (161)
T ss_pred eeccCcEEEEEEecCChhHHHHHHHHhhhhh----ccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHHHHHHh
Confidence 4678999999999999999999999999999 999999999999999999998 678899999999999997 5689
Q ss_pred cccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 88 HTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 88 ~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
|+.||.++|||.||++++||||||.+..||||=+|+|||+
T Consensus 81 h~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgk 120 (161)
T KOG0884|consen 81 HNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGK 120 (161)
T ss_pred hccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeee
Confidence 9999999999999999999999999999999999999996
No 20
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.2e-37 Score=214.11 Aligned_cols=112 Identities=33% Similarity=0.482 Sum_probs=97.8
Q ss_pred CeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCccccCc
Q psy3726 9 GFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKH 88 (127)
Q Consensus 9 ~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~~ 88 (127)
.|+.|+|+||||++.||+||+||++||+.++ |+++.||||+|+|++|+||+....+. ..++.++++|.....|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~----Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~~~ 75 (155)
T cd01920 3 QTSLGDIVVELYDDKAPITVENFLAYVRKGF----YDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGNGLS 75 (155)
T ss_pred EecceeEEEEEeCCCCcHHHHHHHHHHhcCC----CCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCccccccc
Confidence 5899999999999999999999999999999 99999999999999999998744322 2235667777665566
Q ss_pred ccceEEEeecCC-CCCCcceEEEEcCCCCCCCC-----CCeEecC
Q psy3726 89 TGAGFVSMANSG-PNSNGCQFFITMSATPWLDG-----HHTVFGK 127 (127)
Q Consensus 89 ~~~G~l~~~~~~-~~~~~sqFfItl~~~~~ld~-----~~~vFG~ 127 (127)
+++|+|+||+.+ +++++|||||+++++|+||+ +|+||||
T Consensus 76 ~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~ 120 (155)
T cd01920 76 NTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGE 120 (155)
T ss_pred CCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEE
Confidence 789999999965 89999999999999999995 7999996
No 21
>KOG0885|consensus
Probab=100.00 E-value=2.3e-38 Score=237.06 Aligned_cols=116 Identities=43% Similarity=0.743 Sum_probs=111.2
Q ss_pred ECCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCc-cc
Q psy3726 7 YNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDEN-FK 85 (127)
Q Consensus 7 i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~-~~ 85 (127)
|-.|+.|+|-||||+.+||++|.||++||-.|| |+|+.|||++|+|++|||||+ +++.|+.+|||.++.+|. .+
T Consensus 16 il~TT~G~I~iELW~kE~P~acrnFiqKOGegy----y~nt~fhrlvp~f~~Qggdp~-~~gtGgesiyg~~fadE~h~R 90 (439)
T KOG0885|consen 16 ILKTTKGDIDIELWAKECPKACRNFIQLCLEGY----YDNTEFHRLVPGFLVQGGDPT-GTGTGGESIYGRPFADEFHPR 90 (439)
T ss_pred EEEeccCceeeeehhhhhhHHHHHHHHHHHhcc----ccCceeeeeccchhcccCCCC-CCCCCccccccccchhhcCcc
Confidence 447899999999999999999999999999999 999999999999999999998 788999999999999997 57
Q ss_pred cCcccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 86 IKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 86 ~~~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
+.+.++|+|+|+|.+.+.||||||+||+++|+|+++|++||+
T Consensus 91 lrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGK 132 (439)
T KOG0885|consen 91 LRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGK 132 (439)
T ss_pred eeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeee
Confidence 889999999999999999999999999999999999999996
No 22
>KOG0865|consensus
Probab=100.00 E-value=3.7e-38 Score=217.17 Aligned_cols=126 Identities=54% Similarity=0.983 Sum_probs=121.6
Q ss_pred CeEEeEECCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEE---EecCeEEeeCcccccCCCCcccccCC
Q psy3726 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHR---IVKNFVLQGGDVVYNDGRGSISIYGD 77 (127)
Q Consensus 1 v~~di~i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~r---v~~~~~iq~Gd~~~~~~~~~~~~~~~ 77 (127)
||||++++++++|+++++|+.|..|+|++||..||++. ++..|+++.||| .++++|+|+||.+..++++++++|++
T Consensus 6 vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tge-kg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~e 84 (167)
T KOG0865|consen 6 VFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGE-KGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGE 84 (167)
T ss_pred eeeeeeecCccccccceecccccCcchHhhhhhcccCC-CccccccchhhhccccccceeeccCcccccCCccceEeccc
Confidence 79999999999999999999999999999999999987 899999999999 34479999999999999999999999
Q ss_pred CCCCCccccCcccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 78 KFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 78 ~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
.+++|++.++|..+|.|+|+|.+|++++||||||+....|||++|+|||+
T Consensus 85 kF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGk 134 (167)
T KOG0865|consen 85 KFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGK 134 (167)
T ss_pred ccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCc
Confidence 99999999999999999999999999999999999999999999999996
No 23
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=2.8e-37 Score=216.07 Aligned_cols=116 Identities=34% Similarity=0.544 Sum_probs=97.9
Q ss_pred CCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCC------------------
Q psy3726 8 NGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGR------------------ 69 (127)
Q Consensus 8 ~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~------------------ 69 (127)
..|+.|+|+||||++.||+||+||++||+.++ |++++||||+|+|||||||+......
T Consensus 2 ~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~----Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~ 77 (176)
T cd01924 2 EATDNGTITIVLDGYNAPVTAGNFVDLVERGF----YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKP 77 (176)
T ss_pred CccccceEEEEEcCCCCCHHHHHHHHHHHhCC----cCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecc
Confidence 36899999999999999999999999999999 99999999999999999998744211
Q ss_pred --CcccccCCCCC-----CCccccCcccceEEEeecCC--CCCCcceEEEEcC-------CCCCCCCCCeEecC
Q psy3726 70 --GSISIYGDKFD-----DENFKIKHTGAGFVSMANSG--PNSNGCQFFITMS-------ATPWLDGHHTVFGK 127 (127)
Q Consensus 70 --~~~~~~~~~~~-----~e~~~~~~~~~G~l~~~~~~--~~~~~sqFfItl~-------~~~~ld~~~~vFG~ 127 (127)
.+.++++..+. ++.....|+.+|+|+|++.+ +++++|||||+++ ++|+||++|+||||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~ 151 (176)
T cd01924 78 EGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGY 151 (176)
T ss_pred cCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEE
Confidence 12234444332 44566778889999999987 7999999999998 78999999999996
No 24
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=3.2e-37 Score=213.66 Aligned_cols=113 Identities=28% Similarity=0.486 Sum_probs=95.7
Q ss_pred CCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCccccC
Q psy3726 8 NGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDENFKIK 87 (127)
Q Consensus 8 ~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~ 87 (127)
..|+.|+|+||||.+.||+||+||++||+.+| |+++.||||+|+|+|||||+..+.+. ..++.++++|.....
T Consensus 4 ~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~----Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~~~~~ 76 (164)
T PRK10791 4 FHTNHGDIVIKTFDDKAPETVKNFLDYCREGF----YNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEANNGL 76 (164)
T ss_pred EEEccccEEEEEeCCCCcHHHHHHHHHHhcCC----cCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCcccccc
Confidence 46899999999999999999999999999999 99999999999999999997643322 223566777754444
Q ss_pred cccceEEEeecCC-CCCCcceEEEEcCCCCCCC-------C-CCeEecC
Q psy3726 88 HTGAGFVSMANSG-PNSNGCQFFITMSATPWLD-------G-HHTVFGK 127 (127)
Q Consensus 88 ~~~~G~l~~~~~~-~~~~~sqFfItl~~~~~ld-------~-~~~vFG~ 127 (127)
++++|+|||++.+ |++++|||||+++++++|| + +|+||||
T Consensus 77 ~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~ 125 (164)
T PRK10791 77 KNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAE 125 (164)
T ss_pred cCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEE
Confidence 4579999999975 9999999999999988876 3 7999996
No 25
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=6.6e-37 Score=216.40 Aligned_cols=113 Identities=28% Similarity=0.436 Sum_probs=98.0
Q ss_pred CCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCccccC
Q psy3726 8 NGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDENFKIK 87 (127)
Q Consensus 8 ~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~ 87 (127)
.+|+.|+|+||||.+.||+||+||++||+.++ |+++.||||+|+|++|||++....+ ...++.++++|.....
T Consensus 33 l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~----Ydg~~FhRvi~~f~iQgG~~~~~~~---~~~~~~~~~~e~~~~l 105 (190)
T PRK10903 33 LTTSAGNIELELNSQKAPVSVKNFVDYVNSGF----YNNTTFHRVIPGFMIQGGGFTEQMQ---QKKPNPPIKNEADNGL 105 (190)
T ss_pred EEeccccEEEEEeCCCCcHHHHHHHHHHhcCC----cCCcEEEEEeCCceEEeCCcCCCCC---CCCCCCcccCcccccC
Confidence 46899999999999999999999999999999 9999999999999999999764322 1223567777765556
Q ss_pred cccceEEEeecCC-CCCCcceEEEEcCCCCCCCC-----CCeEecC
Q psy3726 88 HTGAGFVSMANSG-PNSNGCQFFITMSATPWLDG-----HHTVFGK 127 (127)
Q Consensus 88 ~~~~G~l~~~~~~-~~~~~sqFfItl~~~~~ld~-----~~~vFG~ 127 (127)
|+++|+|+|++.+ +++++|||||++++.|+||+ +|+||||
T Consensus 106 ~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~ 151 (190)
T PRK10903 106 RNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGK 151 (190)
T ss_pred cCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEE
Confidence 7779999999865 99999999999999999984 8999996
No 26
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=1.6e-35 Score=201.42 Aligned_cols=113 Identities=57% Similarity=0.940 Sum_probs=101.7
Q ss_pred CeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCccccC-
Q psy3726 9 GFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDENFKIK- 87 (127)
Q Consensus 9 ~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~- 87 (127)
.|+.|+|+||||.+.||++|+||++||++++ |+++.|||++|++++|+||+......+ +.++..+++|.....
T Consensus 3 ~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~----Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~~~ 76 (146)
T cd00317 3 DTTKGRIVIELYGDEAPKTVENFLSLARGGF----YDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFPLKY 76 (146)
T ss_pred EeccCcEEEEEcCCCChHHHHHHHHHHhcCC----cCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccccCcC
Confidence 5788999999999999999999999999998 999999999999999999987554322 355678888876655
Q ss_pred cccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 88 HTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 88 ~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
|+++|+|+|++.++++++|||||+++++|+||++|+||||
T Consensus 77 ~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~ 116 (146)
T cd00317 77 HHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGK 116 (146)
T ss_pred cCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEE
Confidence 8889999999999999999999999999999999999996
No 27
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=1.7e-34 Score=197.97 Aligned_cols=119 Identities=57% Similarity=0.911 Sum_probs=102.3
Q ss_pred eEEeEECCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCc-ccccCCCCC
Q psy3726 2 YFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGS-ISIYGDKFD 80 (127)
Q Consensus 2 ~~di~i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~-~~~~~~~~~ 80 (127)
||||..++ +|+|+||||.+.||++|+||++||+.++ |+++.|||++|+++||+|++......+. ....+.+++
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~~----y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~ 74 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSGF----YDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIP 74 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTTS----STTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBS
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhcccc----cCCceeecccccceeeeeeccCCCCcccccccCccccc
Confidence 78998877 9999999999999999999999999998 9999999999999999999875443111 122344688
Q ss_pred CCcc--ccCcccceEEEeecCC--CCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 81 DENF--KIKHTGAGFVSMANSG--PNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 81 ~e~~--~~~~~~~G~l~~~~~~--~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
+|.. .+.| ++|+|+|++.+ +++++|||||+|+++|+||++|+||||
T Consensus 75 ~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~ 124 (155)
T PF00160_consen 75 DEFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGR 124 (155)
T ss_dssp SSGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEE
T ss_pred cccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeE
Confidence 8873 4555 79999999976 889999999999999999999999996
No 28
>KOG0415|consensus
Probab=99.97 E-value=3.4e-32 Score=203.26 Aligned_cols=116 Identities=41% Similarity=0.661 Sum_probs=107.2
Q ss_pred ECCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCC-------CC
Q psy3726 7 YNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGD-------KF 79 (127)
Q Consensus 7 i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~-------~~ 79 (127)
+.+|++|+|+|+||-+++|.+|.||++||+-.| |+.|.||.|..+|++|.|||+ ++|.|+.++|+. .|
T Consensus 4 lieTtlGDlvIDLf~~erP~~clNFLKLCk~KY----YN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~rff 78 (479)
T KOG0415|consen 4 LIETTLGDLVIDLFVKERPRTCLNFLKLCKIKY----YNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQARFF 78 (479)
T ss_pred EEEeecccEEeeeecccCcHHHHHHHHHHhHhh----cccceeeeccccceeecCCCC-CCCCCcceeeeecccccchhh
Confidence 458999999999999999999999999999999 999999999999999999999 688999999874 35
Q ss_pred CCCc-cccCcccceEEEeecCCCCCCcceEEEEcCCC-CCCCCCCeEecC
Q psy3726 80 DDEN-FKIKHTGAGFVSMANSGPNSNGCQFFITMSAT-PWLDGHHTVFGK 127 (127)
Q Consensus 80 ~~e~-~~~~~~~~G~l~~~~~~~~~~~sqFfItl~~~-~~ld~~~~vFG~ 127 (127)
+.|. ..++|.+.|+|+|++.|.|.+||||||||+++ ..|||+|+|||+
T Consensus 79 eaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGq 128 (479)
T KOG0415|consen 79 EAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQ 128 (479)
T ss_pred hhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeee
Confidence 5664 68999999999999999999999999999984 799999999996
No 29
>KOG0882|consensus
Probab=96.13 E-value=0.0061 Score=48.38 Aligned_cols=109 Identities=20% Similarity=0.215 Sum_probs=82.9
Q ss_pred EEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcc----cccC---CCCCCCcccc
Q psy3726 14 RIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI----SIYG---DKFDDENFKI 86 (127)
Q Consensus 14 ~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~----~~~~---~~~~~e~~~~ 86 (127)
-|.|+++.+-.|.-++-|..+|.-.+ +++..|.+|..-+++|.||.......++. +..+ .+-....+.+
T Consensus 113 ~IAVs~~~sg~i~VvD~~~d~~q~~~----fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~ 188 (558)
T KOG0882|consen 113 LIAVSLFKSGKIFVVDGFGDFCQDGY----FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFEL 188 (558)
T ss_pred eEEeecccCCCcEEECCcCCcCccce----ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccc
Confidence 89999999999999999999999998 99999999999999999987654433322 1111 1111234677
Q ss_pred CcccceEEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 87 KHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 87 ~~~~~G~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
+|. .-++..........+-+|.+.-+..+.+.-+..|||+
T Consensus 189 K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F 228 (558)
T KOG0882|consen 189 KHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGF 228 (558)
T ss_pred ccc-chhhcccccccCccceEEccccCcccccCcccEEEEE
Confidence 777 4566666666666778899999888888888888873
No 30
>PRK00969 hypothetical protein; Provisional
Probab=94.94 E-value=0.15 Score=41.08 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=47.6
Q ss_pred EEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCccccCcccceE
Q psy3726 14 RIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGF 93 (127)
Q Consensus 14 ~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~~~~~G~ 93 (127)
-|.|+||.+.||+|+.-|+++.--..+.. =-.++|-..++.++-=|+.. +...+..|+.......+|.
T Consensus 379 vi~IeLydd~AP~s~~yFR~~tGL~~~~V--G~L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~~~V~ag~ 446 (508)
T PRK00969 379 LIEIELYDDKAPRTVWYFRKVTGLKTKPV--GKLPVYFKYEDTYLFKGNIE----------YAKGLLPENTPEDKVKAGE 446 (508)
T ss_pred EEEEEEcCcCCchHHHHHHHhcCCccccc--ceeEEEEEeCCeEEEccChh----------hccccCCCCCCCCccccce
Confidence 48899999999999999999864322111 13466667777655533332 2334445554444556788
Q ss_pred EEeecCC
Q psy3726 94 VSMANSG 100 (127)
Q Consensus 94 l~~~~~~ 100 (127)
+++.|..
T Consensus 447 IgvTN~a 453 (508)
T PRK00969 447 IGVTNMA 453 (508)
T ss_pred Eeeechh
Confidence 8877643
No 31
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=94.51 E-value=0.22 Score=40.10 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=46.2
Q ss_pred EEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCccccCcccceE
Q psy3726 14 RIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGF 93 (127)
Q Consensus 14 ~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~~~~~G~ 93 (127)
-|.|+||.+.||+|+.-|+++.--..+. -=-.++|-..++.++-=|+.. +...+..|+.......+|.
T Consensus 376 vi~IeLydd~AP~s~~yFRk~tGL~~~~--VG~L~v~F~~~d~~mFk~~~~----------~~k~LiPEN~P~~~V~ag~ 443 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFTGLKTKP--VGRLPVHFAFKEMIMFKGNKE----------LAKGLIPENTPEDKVEAGV 443 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhcCCcccc--cceeEEEEEeCCeeEeccCch----------hccccCCCCCCCCccccce
Confidence 4889999999999999999985422111 113466666777555433322 2334444544444555788
Q ss_pred EEeecCC
Q psy3726 94 VSMANSG 100 (127)
Q Consensus 94 l~~~~~~ 100 (127)
+++.|..
T Consensus 444 IgvTN~a 450 (503)
T TIGR03268 444 IGVTNQA 450 (503)
T ss_pred Eeeechh
Confidence 8877643
No 32
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=91.15 E-value=0.7 Score=36.49 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=28.3
Q ss_pred EEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecC
Q psy3726 14 RIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKN 55 (127)
Q Consensus 14 ~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~ 55 (127)
-|.||||.+.||.++.-|.++..-..+. --..+.|-..++
T Consensus 377 iieIELyed~APrSv~yFRr~t~l~~kp--VGkL~Vhfay~d 416 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTGLKTKP--VGKLKVHFAYDD 416 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhccccccc--ccceEEEEEeCC
Confidence 3889999999999999999986432111 223456666666
No 33
>PRK00969 hypothetical protein; Provisional
Probab=89.64 E-value=5.2 Score=32.59 Aligned_cols=89 Identities=27% Similarity=0.358 Sum_probs=53.1
Q ss_pred EEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCccccCcccceE
Q psy3726 14 RIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGF 93 (127)
Q Consensus 14 ~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~~~~~G~ 93 (127)
.+.+||.+ .+|.++++|+.+.+.+.-...|.-++|-+ ..+..+...+.|+... .++|+
T Consensus 205 y~eve~~~-~~p~s~EH~la~~~~G~f~Vd~~tstfI~-------------------d~~L~g~~~p~En~~~--R~~Gt 262 (508)
T PRK00969 205 YVEVELDP-GAPKSVEHFLALLEDGTFEVDFETSTFIA-------------------DDRLQGLKIPEENFEP--RRRGT 262 (508)
T ss_pred EEEEEEcC-CCCchHHHHHHHHhCCeEEEeeeecceEe-------------------eccccCccCCccccCc--cccce
Confidence 57788885 59999999999999885111122222211 1222344445554333 34799
Q ss_pred EEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 94 VSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 94 l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
|++.+.|.+. -.-||--.+-| -.-.|+|+||
T Consensus 263 VTVRt~G~g~--G~vYIyredr~-ss~sHtvVG~ 293 (508)
T PRK00969 263 VTVRTAGVGV--GKVYIYREDRP-SSLSHTVVGR 293 (508)
T ss_pred EEEEeeccCc--eeEEEECCCCC-CCccceeEEE
Confidence 9999876543 35777776644 2235677764
No 34
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=88.97 E-value=6 Score=32.18 Aligned_cols=90 Identities=27% Similarity=0.342 Sum_probs=52.8
Q ss_pred EEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecCeEEeeCcccccCCCCcccccCCCCCCCccccCcccce
Q psy3726 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAG 92 (127)
Q Consensus 13 G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~~~~~G 92 (127)
=.+.+||.+ .+|.++++|+.+.+.+.-...+.-++| +. ..+..+...+.|+.. ..++|
T Consensus 201 Ty~evE~~~-~~p~s~EH~la~~~~G~~~Vd~~tsTf-------i~------------d~~L~g~~~p~En~~--~R~rG 258 (503)
T TIGR03268 201 TYVEVELDP-NAPVSVEHFLALMEDGTFRVDYRTSTF-------IS------------DDSLRGLDKPEENIE--KRRRG 258 (503)
T ss_pred EEEEEEEcC-CCChhHHHHHHHHhCCeEEEeeeecce-------Ee------------cccccCccCCccccC--cccce
Confidence 357788874 699999999999998851111222222 11 112224444555433 23479
Q ss_pred EEEeecCCCCCCcceEEEEcCCCCCCCCCCeEecC
Q psy3726 93 FVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127 (127)
Q Consensus 93 ~l~~~~~~~~~~~sqFfItl~~~~~ld~~~~vFG~ 127 (127)
++.+.+.|.+. -.-||--.+.| ..-.|+|+||
T Consensus 259 tVTVRn~G~G~--G~VYIYredr~-ss~sHtvVG~ 290 (503)
T TIGR03268 259 AVTVRNSGVGE--GRVYIYREDRP-SSLSHNVVGH 290 (503)
T ss_pred eEEEEeeccCc--eeEEEEcCCCC-CCcccceeEE
Confidence 99999876543 35777766544 2235667664
No 35
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=80.83 E-value=1.7 Score=29.62 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=24.1
Q ss_pred EEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecC
Q psy3726 14 RIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKN 55 (127)
Q Consensus 14 ~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~ 55 (127)
.++.+|..|.||+||+.|.++- - |++..+|-...+
T Consensus 9 ~~~A~l~~d~AP~Tcaa~~~~L---P----~~~~~~HarwSG 43 (147)
T PF12903_consen 9 SFTARLLDDKAPKTCAAFWEAL---P----LKGKVIHARWSG 43 (147)
T ss_dssp EEEEEE-TTTSHHHHHHHHHH---------EEEE-EE-SSSS
T ss_pred EEEEEEcccCChHHHHHHHHhC---C----CCCcEEEEEEEC
Confidence 5788999999999999999985 2 555555555544
No 36
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=79.65 E-value=5.2 Score=31.78 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=22.5
Q ss_pred eEEEEEEEcCCCCcchHHhHHhhhccCC
Q psy3726 12 EGRIIVGLFGKDVPKTVENFKTLATVGV 39 (127)
Q Consensus 12 ~G~i~ieL~~~~~P~t~~nF~~L~~~~~ 39 (127)
.=.+.+||.+ .+|+++++|++|...+.
T Consensus 202 fTy~eve~s~-nsP~saEH~lalmedG~ 228 (512)
T COG4070 202 FTYFEVELSR-NSPKSAEHFLALMEDGT 228 (512)
T ss_pred EEEEEEEeCC-CCchhHHHHHHHhhcce
Confidence 3468889985 59999999999998774
No 37
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=75.21 E-value=21 Score=23.78 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=31.1
Q ss_pred CeeeEEEEEEEcCCC--Ccc-------hHHhHHhhhccCCccccccccEEEEEecC
Q psy3726 9 GFHEGRIIVGLFGKD--VPK-------TVENFKTLATVGVENKTYIGTKFHRIVKN 55 (127)
Q Consensus 9 ~t~~G~i~ieL~~~~--~P~-------t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~ 55 (127)
++..||+.+..-.+. ||. +++.|++..+. -+.-+.+.|+-++++
T Consensus 9 Esd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~k---yI~veeStFylvvrd 61 (130)
T PF06138_consen 9 ESDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVLKK---YIDVEESTFYLVVRD 61 (130)
T ss_pred eccCceeEEEEeCCCcccccccchHHHHHHHHHHHHHh---hEEecccEEEEEEec
Confidence 567788777766544 333 57899988763 233578999999998
No 38
>PHA03001 putative virion core protein; Provisional
Probab=44.88 E-value=93 Score=20.80 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=30.3
Q ss_pred CeeeEEEEEEEc--CCCCcc------hHHhHHhhhccCCccccccccEEEEEecC
Q psy3726 9 GFHEGRIIVGLF--GKDVPK------TVENFKTLATVGVENKTYIGTKFHRIVKN 55 (127)
Q Consensus 9 ~t~~G~i~ieL~--~~~~P~------t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~ 55 (127)
++..||+.+..- +..||. ++++|++.... -+.-+.+.|+-++++
T Consensus 9 Esd~grvkl~~~~~~~~~~~~~~~~ka~~~fl~~L~k---Yi~v~eStFylvvrd 60 (132)
T PHA03001 9 ETDAGRVKLAIENPDKVCATKAEMRKAINKFLELLKK---YIHVDKSTFYLVVKD 60 (132)
T ss_pred eccCCceEEEEcCCCccccccchHHHHHHHHHHHHHh---hEEecccEEEEEEec
Confidence 566777666553 334554 67899888753 234678999999988
No 39
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=43.45 E-value=6.7 Score=21.58 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=11.7
Q ss_pred eEEEEEEEcCCCCcc
Q psy3726 12 EGRIIVGLFGKDVPK 26 (127)
Q Consensus 12 ~G~i~ieL~~~~~P~ 26 (127)
-||++|||-+++|-.
T Consensus 28 GGRLVvEl~~~Ea~~ 42 (51)
T PF11314_consen 28 GGRLVVELNPDEAKE 42 (51)
T ss_pred CcEEEEEeCHHHHHH
Confidence 489999999876643
No 40
>KOG3953|consensus
Probab=32.08 E-value=78 Score=23.42 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=31.9
Q ss_pred EEeEECCeeeEE-EEEEEcCCCCcchHHhHHhhhccCCcccccc
Q psy3726 3 FDLNYNGFHEGR-IIVGLFGKDVPKTVENFKTLATVGVENKTYI 45 (127)
Q Consensus 3 ~di~i~~t~~G~-i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~ 45 (127)
.+|...+-..|. .+|.+....||.+|.-+.+|.-..-++++++
T Consensus 73 w~i~w~~r~~GT~avVGIaTk~Aplha~gy~aLlGs~~qswGw~ 116 (242)
T KOG3953|consen 73 WEIAWPNRQRGTHAVVGIATKVAPLHAVGYTALLGSNSQSWGWD 116 (242)
T ss_pred EEEEecCCccCCcceEEEEcccCchhhhHHHHHhCCCCCcccee
Confidence 355555555564 6899999999999999999987654555543
No 41
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=30.93 E-value=79 Score=18.32 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=18.6
Q ss_pred ECCeeeEEEEEEEcCCCCcchHHhHHhhhc
Q psy3726 7 YNGFHEGRIIVGLFGKDVPKTVENFKTLAT 36 (127)
Q Consensus 7 i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~ 36 (127)
+.+++.|.++++|-++ +...+..++..+
T Consensus 40 i~~~~~G~l~l~l~g~--~~~~~~a~~~L~ 67 (76)
T PF09383_consen 40 IQGTPFGILILELPGD--DEEIEKAIAYLR 67 (76)
T ss_dssp ETTEEEEEEEEEEES---HHHHHHHHHHHH
T ss_pred cCCeeEEEEEEEEECC--HHHHHHHHHHHH
Confidence 5689999999999764 333455554443
No 42
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=27.12 E-value=80 Score=23.51 Aligned_cols=25 Identities=28% Similarity=0.289 Sum_probs=21.3
Q ss_pred EEEEEEcCC----CCcchHHhHHhhhccC
Q psy3726 14 RIIVGLFGK----DVPKTVENFKTLATVG 38 (127)
Q Consensus 14 ~i~ieL~~~----~~P~t~~nF~~L~~~~ 38 (127)
.-|+|||.. .||.+=++|.+|++..
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~~ 70 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADDP 70 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccCC
Confidence 358999965 6999999999999865
No 43
>PRK14452 acylphosphatase; Provisional
Probab=26.96 E-value=1.1e+02 Score=19.56 Aligned_cols=39 Identities=18% Similarity=0.412 Sum_probs=28.4
Q ss_pred ECCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEE
Q psy3726 7 YNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRI 52 (127)
Q Consensus 7 i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv 52 (127)
+.+..-|+|.|++-++ +..++.|++++..+ . ..+.+.++
T Consensus 52 V~N~~dGsVeI~~qG~--~~~ve~F~~~l~~g-P----~~A~V~~v 90 (107)
T PRK14452 52 VRNLSDGSVEVQAEGP--PLALSELRAWCERG-P----PGARVKRV 90 (107)
T ss_pred EEECCCCCEEEEEEcC--HHHHHHHHHHHhcC-C----CCcEEEEE
Confidence 4566778888888764 66899999999876 2 24556555
No 44
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=26.18 E-value=84 Score=17.97 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=18.9
Q ss_pred ceEEEeecCCCCCCcceEEEEcCCC
Q psy3726 91 AGFVSMANSGPNSNGCQFFITMSAT 115 (127)
Q Consensus 91 ~G~l~~~~~~~~~~~sqFfItl~~~ 115 (127)
|..++..........|+|+|..++.
T Consensus 17 rnrigivk~~e~q~~~~f~ivi~~q 41 (68)
T PF13051_consen 17 RNRIGIVKKNEKQLESHFAIVIGEQ 41 (68)
T ss_pred cceeEEEecchhhcCCcEEEEECCe
Confidence 3456777777778899999998764
No 45
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=25.50 E-value=1.3e+02 Score=20.80 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEec
Q psy3726 15 IIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVK 54 (127)
Q Consensus 15 i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~ 54 (127)
+.|-||.-+.|..+-|.+++|..- |+..|.|.|
T Consensus 3 ~~IvL~~PeIP~NTGNI~R~ca~t-------ga~LhlI~P 35 (155)
T COG0219 3 LNIVLYQPEIPPNTGNIIRTCAAT-------GAELHLIEP 35 (155)
T ss_pred cEEEEECCCCCCchhHHHHHHHhc-------CCeEEEEcc
Confidence 578899999999999999999643 788998866
No 46
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=24.92 E-value=32 Score=21.30 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=13.5
Q ss_pred eeEEEEEEEcCCCCcch
Q psy3726 11 HEGRIIVGLFGKDVPKT 27 (127)
Q Consensus 11 ~~G~i~ieL~~~~~P~t 27 (127)
+-++-.||||.|.||-+
T Consensus 37 ~~~~ceIELY~DfApyS 53 (95)
T PF13496_consen 37 PNHPCEIELYYDFAPYS 53 (95)
T ss_pred CCCCeEEEEEeccCccc
Confidence 34677899999999954
No 47
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=23.91 E-value=80 Score=19.12 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=28.3
Q ss_pred ECCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEE
Q psy3726 7 YNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRI 52 (127)
Q Consensus 7 i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv 52 (127)
+.+.+-|++.|++-+ .+...+.|++.|+.+. - .+.+..+
T Consensus 36 V~N~~dg~V~i~~~G--~~~~l~~f~~~l~~g~----p-~a~V~~i 74 (91)
T PF00708_consen 36 VRNLPDGSVEIEAEG--EEEQLEEFIKWLKKGP----P-PARVDEI 74 (91)
T ss_dssp EEE-TTSEEEEEEEE--EHHHHHHHHHHHHHSS----T-TSEEEEE
T ss_pred EEECCCCEEEEEEEe--CHHHHHHHHHHHHhCC----C-CcEEEEE
Confidence 445667888888887 6788999999999873 2 2666665
No 48
>PRK14420 acylphosphatase; Provisional
Probab=22.08 E-value=66 Score=19.68 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=24.5
Q ss_pred ECCeeeEEEEEEEcCCCCcchHHhHHhhhccC
Q psy3726 7 YNGFHEGRIIVGLFGKDVPKTVENFKTLATVG 38 (127)
Q Consensus 7 i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~ 38 (127)
+.+.+-|+|.|++-++ +...+.|++.++.+
T Consensus 34 V~N~~dG~Vei~~qG~--~~~i~~f~~~l~~~ 63 (91)
T PRK14420 34 VKNRDDGTVEIEAEGP--EEALQLFLDAIEKG 63 (91)
T ss_pred EEECCCCcEEEEEEEC--HHHHHHHHHHHHhC
Confidence 4466788999999875 68899999999866
No 49
>PRK14443 acylphosphatase; Provisional
Probab=21.93 E-value=1.4e+02 Score=18.60 Aligned_cols=40 Identities=10% Similarity=0.297 Sum_probs=28.1
Q ss_pred ECCeeeEEEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEE
Q psy3726 7 YNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRI 52 (127)
Q Consensus 7 i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv 52 (127)
+.+.+-|+|.|++-++ +...+.|++.++.+- =..+.+.++
T Consensus 36 V~N~~dG~Vei~~qG~--~~~l~~f~~~l~~g~----p~~a~V~~v 75 (93)
T PRK14443 36 VKNLDDGSVEIHAIAE--EENLNKFIDAIKKGP----SPGCRIEHV 75 (93)
T ss_pred EEECCCCEEEEEEECC--HHHHHHHHHHHhcCC----CCcEEEEEE
Confidence 4466778999999874 556999999998763 224555554
No 50
>PRK14426 acylphosphatase; Provisional
Probab=21.86 E-value=1.8e+02 Score=17.89 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=23.6
Q ss_pred ECCeeeEEEEEEEcCCCCcchHHhHHhhhccC
Q psy3726 7 YNGFHEGRIIVGLFGKDVPKTVENFKTLATVG 38 (127)
Q Consensus 7 i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~ 38 (127)
+.+.+-|+|.|++-+ .+..++.|++.++.+
T Consensus 36 V~N~~dG~Vei~~~G--~~~~i~~f~~~l~~g 65 (92)
T PRK14426 36 AKNLDDGSVEVVACG--EEEQVEKLMEWLKEG 65 (92)
T ss_pred EEECCCCcEEEEEEe--CHHHHHHHHHHHhcC
Confidence 345567888888876 577899999999876
No 51
>COG1765 Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=20.52 E-value=91 Score=20.67 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCcchHHhHHhhhccCCccccccccEEEEEecC
Q psy3726 14 RIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKN 55 (127)
Q Consensus 14 ~i~ieL~~~~~P~t~~nF~~L~~~~~~~~~Y~g~~f~rv~~~ 55 (127)
+|.+.+.++..+..++++++++...+ |+.+|.+..
T Consensus 91 ~i~~~v~gd~~~e~~~~~i~~a~ek~-------C~v~~~L~~ 125 (137)
T COG1765 91 NIHFVVKGDLDEEKLKRAVELAEEKY-------CPVSRTLTK 125 (137)
T ss_pred EEEEEEecCCCHHHHHHHHHHHhccc-------CcHhhhhcC
Confidence 37788888999999999999997654 777776543
No 52
>KOG3422|consensus
Probab=20.39 E-value=1e+02 Score=22.44 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=26.8
Q ss_pred ECCeeeEEEEEEEcCCCCcchHHhHHhhhccCC
Q psy3726 7 YNGFHEGRIIVGLFGKDVPKTVENFKTLATVGV 39 (127)
Q Consensus 7 i~~t~~G~i~ieL~~~~~P~t~~nF~~L~~~~~ 39 (127)
+-..+.|+|.+|+-++..-..|+.|+..+....
T Consensus 135 va~V~~GrIl~EmgG~~~~~~Ar~al~~aa~kl 167 (221)
T KOG3422|consen 135 VARVKAGRILFEMGGDVEEEEARQALLQAAHKL 167 (221)
T ss_pred EEEecCCcEEEEeCCcccHHHHHHHHHHHHhcC
Confidence 334578999999999977778889999987664
Done!