RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3726
(127 letters)
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin,
endoplasmic reticulum, glycoprot isomerase, rotamase;
1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A*
2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 197 bits (502), Expect = 4e-66
Identities = 74/127 (58%), Positives = 91/127 (71%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+YFDL GR+I GLFGK VPKTV+NF LAT G + Y +KFHR++K+F++QG
Sbjct: 18 VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALAT-GEKGFGYKNSKFHRVIKDFMIQG 76
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD DG G SIYG++F DENFK+KH G G+VSMAN+G ++NG QFFIT T WLDG
Sbjct: 77 GDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDG 136
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 137 KHVVFGK 143
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 196 bits (501), Expect = 6e-66
Identities = 66/131 (50%), Positives = 86/131 (65%), Gaps = 4/131 (3%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT--VGVENK--TYIGTKFHRIVKNF 56
++FD++ G GR+ + LF VPKT ENF+ T + Y G+ FHR++K+F
Sbjct: 13 VFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDF 72
Query: 57 VLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATP 116
++QGGD V DG G SIY F DENFK++H+ G +SMANSGP++NGCQFFIT S
Sbjct: 73 MIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCD 132
Query: 117 WLDGHHTVFGK 127
WLDG H VFGK
Sbjct: 133 WLDGKHVVFGK 143
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 202 bits (515), Expect = 1e-65
Identities = 66/133 (49%), Positives = 84/133 (63%), Gaps = 7/133 (5%)
Query: 2 YFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT----VGVENK---TYIGTKFHRIVK 54
+FD++ G GRI++ LF VPKT ENF+ L T +G + G FHRI+K
Sbjct: 19 FFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIK 78
Query: 55 NFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSA 114
F++QGGD +G G SIYG+KF+DENF KH G +SMAN+G N+NG QFFIT
Sbjct: 79 KFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVP 138
Query: 115 TPWLDGHHTVFGK 127
TP LDG H VFG+
Sbjct: 139 TPHLDGKHVVFGQ 151
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 195 bits (497), Expect = 2e-65
Identities = 61/133 (45%), Positives = 78/133 (58%), Gaps = 7/133 (5%)
Query: 2 YFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT----VGVENK---TYIGTKFHRIVK 54
+ D+ +G GRI++ L+ P+T NF L T G + Y G+ FHR++K
Sbjct: 10 FLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIK 69
Query: 55 NFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSA 114
NF++QGGD DG G SIYG FDDE F +KH VSMAN GPN+NG QFFIT +
Sbjct: 70 NFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTP 129
Query: 115 TPWLDGHHTVFGK 127
P L+ H VFGK
Sbjct: 130 APHLNNIHVVFGK 142
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 195 bits (498), Expect = 2e-65
Identities = 62/133 (46%), Positives = 78/133 (58%), Gaps = 7/133 (5%)
Query: 2 YFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT----VGVENK---TYIGTKFHRIVK 54
+FD+ N GRI+ LF PKT +NF L + +G Y G+ FHR+VK
Sbjct: 23 HFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVK 82
Query: 55 NFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSA 114
NF++QGGD +G+G SIYG F DENF +KH A +SMAN G ++NG QFFIT
Sbjct: 83 NFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKP 142
Query: 115 TPWLDGHHTVFGK 127
P LDG H VFG
Sbjct: 143 APHLDGVHVVFGL 155
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A*
2gw2_A
Length = 179
Score = 194 bits (496), Expect = 3e-65
Identities = 62/133 (46%), Positives = 80/133 (60%), Gaps = 7/133 (5%)
Query: 2 YFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT----VGVENK---TYIGTKFHRIVK 54
+FD+ N GR++ LF PKT ENF+ L T G + Y FHR+VK
Sbjct: 13 FFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVK 72
Query: 55 NFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSA 114
+F++QGGD +GRG SIYG F+DE+F +KH +SMAN G ++NG QFFIT
Sbjct: 73 DFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKP 132
Query: 115 TPWLDGHHTVFGK 127
TP LDGHH VFG+
Sbjct: 133 TPHLDGHHVVFGQ 145
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 193 bits (494), Expect = 5e-65
Identities = 68/133 (51%), Positives = 88/133 (66%), Gaps = 6/133 (4%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT----VGVENK--TYIGTKFHRIVK 54
++FD+ G GRI++ L+ VPKT NF+ L T +G K + G+KFHRI+
Sbjct: 6 VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP 65
Query: 55 NFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSA 114
NF++QGGD +G G SIYG+KF DENFK KHTG G +SMAN+GPN+NG QFF+
Sbjct: 66 NFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVK 125
Query: 115 TPWLDGHHTVFGK 127
T WLDG H VFG+
Sbjct: 126 TEWLDGKHVVFGR 138
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 194 bits (495), Expect = 6e-65
Identities = 67/133 (50%), Positives = 80/133 (60%), Gaps = 6/133 (4%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT----VGVENK--TYIGTKFHRIVK 54
+YFD++ GRI + LF VP T ENF+ L T +G K Y G+ FHRI+
Sbjct: 22 VYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIP 81
Query: 55 NFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSA 114
F++QGGD DG G SIYG KF DENF H +SMAN+GPN+NG QFFIT
Sbjct: 82 QFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVP 141
Query: 115 TPWLDGHHTVFGK 127
PWLDG H VFGK
Sbjct: 142 CPWLDGKHVVFGK 154
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 194 bits (496), Expect = 1e-64
Identities = 66/131 (50%), Positives = 84/131 (64%), Gaps = 4/131 (3%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT----VGVENKTYIGTKFHRIVKNF 56
++ D+N G+ LF VPKT ENF+ T V Y T FHR++K F
Sbjct: 62 VFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEF 121
Query: 57 VLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATP 116
++QGGD + ++G GS+SIYG+KFDDENF IKH G +SMANSGPN+NGCQFFIT
Sbjct: 122 MIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCE 181
Query: 117 WLDGHHTVFGK 127
WLDG + VFG+
Sbjct: 182 WLDGKNVVFGR 192
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW,
decode, cytoplasm, rotamase, structural genomics; HET:
PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 193 bits (492), Expect = 2e-64
Identities = 63/127 (49%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+YFD+ N GRI++ L VPKT +NF+TL + + Y G+ FHRI+ F++QG
Sbjct: 30 VYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCE-RPKGEGYKGSTFHRIIPGFMVQG 88
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF DENF++KHT G +SMAN G ++NG QFFIT+ T WLD
Sbjct: 89 GDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDE 148
Query: 121 HHTVFGK 127
H VFG+
Sbjct: 149 KHVVFGE 155
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 191 bits (489), Expect = 2e-64
Identities = 64/132 (48%), Positives = 83/132 (62%), Gaps = 5/132 (3%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT---VGVENK--TYIGTKFHRIVKN 55
++FD++ + + GRII LF P+T ENF+ L T +G K Y + FHRI+
Sbjct: 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQ 65
Query: 56 FVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSAT 115
F+ QGGD+ +G G SIYG F DENF +KH G +SMAN+GPN+N QFFIT+
Sbjct: 66 FMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPC 125
Query: 116 PWLDGHHTVFGK 127
PWLDG H VFGK
Sbjct: 126 PWLDGKHVVFGK 137
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase,
RNA-binding, cyclosporin, cyclophilin, beta-barrel;
1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 191 bits (488), Expect = 4e-64
Identities = 64/127 (50%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ GRI++ L VP+T ENF+ L T G Y FHR++ F+ QG
Sbjct: 13 VFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCT-GERGFGYHNCCFHRVIPQFMCQG 71
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD V DG G SIYG KFDDENF+++H G G +SMANSGPN+NG QFFI + WLDG
Sbjct: 72 GDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDG 131
Query: 121 HHTVFGK 127
H VFG+
Sbjct: 132 KHVVFGR 138
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 190 bits (486), Expect = 8e-64
Identities = 65/127 (51%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+Y D+ GRI + L VP T ENF+ L T + + G+ FHRI+ F+ QG
Sbjct: 14 VYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCT-HEKGFGFKGSSFHRIIPQFMCQG 72
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG KFDDENF +KHTG G +SMANSGPN+NG QFF+T T WLDG
Sbjct: 73 GDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDG 132
Query: 121 HHTVFGK 127
H VFG+
Sbjct: 133 KHVVFGE 139
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 190 bits (485), Expect = 9e-64
Identities = 63/127 (49%), Positives = 83/127 (65%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+Y D++ NG GR+++ L VPKT ENF+ L T G + Y G+ FHR++ +F+ Q
Sbjct: 6 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQA 64
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG +F DENF +KH G G +SMAN+GPN+NG QFFI T WLDG
Sbjct: 65 GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 124
Query: 121 HHTVFGK 127
H VFG
Sbjct: 125 KHVVFGH 131
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 190 bits (486), Expect = 1e-63
Identities = 68/127 (53%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++FD+ +G GR+ LF VPKT ENF+ L+T G + Y G+ FHRI+ F+ QG
Sbjct: 25 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQG 83
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF+DENF +KHTG G +SMAN+GPN+NG QFFI + T WLDG
Sbjct: 84 GDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 143
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 144 KHVVFGK 150
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 190 bits (485), Expect = 1e-63
Identities = 65/127 (51%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
++F+++ N EGRI+ L+ + VPKT +NF+ LAT G Y + FHR++ F+LQG
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELAT-GQHGFGYKDSIFHRVIPQFMLQG 63
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG+KF DENF++KHT G +SMAN+G N+NG QFFIT T WLDG
Sbjct: 64 GDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDG 123
Query: 121 HHTVFGK 127
H VFG+
Sbjct: 124 KHVVFGE 130
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 187 bits (477), Expect = 2e-62
Identities = 70/127 (55%), Positives = 87/127 (68%), Gaps = 2/127 (1%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+YFD+ + GRI +GLFGKD P T ENF+ L T G Y + FHR+++NF++QG
Sbjct: 14 VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCT-GEHGFGYKDSIFHRVIQNFMIQG 72
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD DG G SIYG+KF DEN +KH G +SMAN+GPN+NG QFFIT + TPWLDG
Sbjct: 73 GDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDG 131
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 132 RHVVFGK 138
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp
F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus}
SCOP: b.62.1.1
Length = 172
Score = 185 bits (471), Expect = 1e-61
Identities = 67/132 (50%), Positives = 84/132 (63%), Gaps = 6/132 (4%)
Query: 1 MYFDLNY-----NGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKN 55
++FD+ Y GRI+ LF KDVPKT +NF+ L + Y + FHRI+ N
Sbjct: 5 VFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCK-RPAGEGYRESTFHRIIPN 63
Query: 56 FVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSAT 115
F++QGGD +G G SIYGDKF DENF KH G +SMAN+GPN+NG QFFIT + T
Sbjct: 64 FMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVT 123
Query: 116 PWLDGHHTVFGK 127
WLDG H VFG+
Sbjct: 124 SWLDGKHVVFGE 135
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 174 bits (443), Expect = 2e-56
Identities = 38/155 (24%), Positives = 58/155 (37%), Gaps = 29/155 (18%)
Query: 2 YFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLAT----------------VGVENKTYI 45
Y D+ N GR+ + LF P VENF L N+TY
Sbjct: 18 YMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYE 77
Query: 46 GTKFHRIVKNFVLQGGDVVYNDGRGSISIYGDKFDD---ENFKIKHTGAGFVSMA----N 98
G KFH ++ N + GD+ ++G + ++Y D+ ++ H G +S+
Sbjct: 78 GCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDE 137
Query: 99 SGPNSNGCQFFITMS------ATPWLDGHHTVFGK 127
SG F IT+ LD V G+
Sbjct: 138 SGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQ 172
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 165 bits (419), Expect = 1e-53
Identities = 60/116 (51%), Positives = 82/116 (70%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I++ L+ K PKT +NF LA Y GTKFHRI+K+F++QGGD GRG
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELA----RRGYYNGTKFHRIIKDFMIQGGDPT-GTGRGGA 75
Query: 73 SIYGDKFDDE-NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
SIYG +F+DE + +K TGAG ++MAN+GP++NG QFF+T++ T WLDG HT+FG+
Sbjct: 76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGR 131
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 166 bits (422), Expect = 1e-53
Identities = 60/116 (51%), Positives = 82/116 (70%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I++ L+ K PKT +NF LA Y GTKFHRI+K+F++QGGD GRG
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELA----RRGYYNGTKFHRIIKDFMIQGGDPT-GTGRGGA 75
Query: 73 SIYGDKFDDE-NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
SIYG +F+DE + +K TGAG ++MAN+GP++NG QFF+T++ T WLDG HT+FG+
Sbjct: 76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGR 131
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 163 bits (414), Expect = 5e-53
Identities = 56/116 (48%), Positives = 72/116 (62%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I + LF K+ KTV+NF + G Y FHR++K+F++Q GD DG G
Sbjct: 15 GDIHISLFYKECKKTVQNFSVHSING----YYNNCIFHRVIKHFMVQTGDPS-GDGTGGE 69
Query: 73 SIYGDKFDDENFK-IKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
SI+G++F+DE F + H+ VSMAN GPN+NG QFFIT PWLD HTVFGK
Sbjct: 70 SIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGK 125
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 162 bits (412), Expect = 1e-52
Identities = 55/116 (47%), Positives = 71/116 (61%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I LF + PKTVENF + N Y G FHRI+K F++Q GD G G
Sbjct: 31 GDIHTKLFPVECPKTVENFCVHS----RNGYYNGHTFHRIIKGFMIQTGDPT-GTGMGGE 85
Query: 73 SIYGDKFDDE-NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
SI+G +F+DE + ++H +SMAN+G N+NG QFFIT+ TPWLD HTVFG+
Sbjct: 86 SIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGR 141
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 160 bits (406), Expect = 2e-51
Identities = 58/116 (50%), Positives = 75/116 (64%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G V L+ PKT NF TL E Y T FHR++ NFV+QGGD G+G
Sbjct: 48 GDFEVELYWYHSPKTCLNFYTLC----EMGFYDNTIFHRVIPNFVIQGGDPT-GTGKGGK 102
Query: 73 SIYGDKFDDE-NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
SIYG+ F+DE N ++KHTGAG +SM+N+GPN+N QFFIT++ P LDG HT+F +
Sbjct: 103 SIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFAR 158
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 157 bits (398), Expect = 4e-50
Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 16/127 (12%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYND----G 68
G + + L P+ ++F L K + T FHR ++NF++QGG
Sbjct: 16 GSLNIELHADMAPRACDSFLRLC----AVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKK 71
Query: 69 RGSISIY-------GDKFDDE-NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
S G F+DE + ++ H G G +SMAN G +SN +FFIT + L+
Sbjct: 72 EVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNN 131
Query: 121 HHTVFGK 127
HT+FG+
Sbjct: 132 KHTIFGR 138
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 153 bits (389), Expect = 4e-49
Identities = 56/116 (48%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I + +F + PKT ENF L + Y G FHR +K F++Q GD GRG
Sbjct: 10 GDIKIEVFCERTPKTCENFLALC----ASNYYNGCIFHRNIKGFMVQTGDPT-GTGRGGN 64
Query: 73 SIYGDKFDDE-NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
SI+G KF+DE + +KH G VSMAN+GPN+NG QFFIT P LD +TVFGK
Sbjct: 65 SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGK 120
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 154 bits (391), Expect = 5e-49
Identities = 54/116 (46%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G + + L PKT ENF L + Y GT FHR ++NFV+QGGD G G
Sbjct: 29 GDLNLELHCDLTPKTCENFIRLC----KKHYYDGTIFHRSIRNFVIQGGDPT-GTGTGGE 83
Query: 73 SIYGDKFDDE-NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
S +G F DE + HTG G +SMANSGPNSN QFFIT + +LD HT+FG+
Sbjct: 84 SYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGR 139
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 153 bits (388), Expect = 8e-49
Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I + L+ K+ PK NF L Y T FHR+V F++QGGD G G
Sbjct: 34 GDIDIELWSKEAPKACRNFIQLC----LEAYYDNTIFHRVVPGFIVQGGDPT-GTGSGGE 88
Query: 73 SIYGDKFDDE-NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
SIYG F DE + +++ G V+MAN+G + NG QFF T+ L+ HT+FGK
Sbjct: 89 SIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGK 144
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 149 bits (378), Expect = 3e-47
Identities = 50/120 (41%), Positives = 70/120 (58%), Gaps = 10/120 (8%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G + LF PK +NF L+ + Y T FH+ +K F++QGGD G+G
Sbjct: 26 GDLKFELFCSQCPKACKNFLALS----ASGYYKNTIFHKNIKGFIIQGGDPT-GTGKGGE 80
Query: 73 SIYGDKFDDENF-KIKHTGAGFVSMANSG----PNSNGCQFFITMSATPWLDGHHTVFGK 127
SIYG FDDE + ++K+ G +SMA+ G PN+NG QFFIT S+ P L+G + +FGK
Sbjct: 81 SIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGK 140
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009,
rotamase, structural proteomics in europe, spine; 2.6A
{Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 142 bits (360), Expect = 2e-44
Identities = 51/127 (40%), Positives = 70/127 (55%), Gaps = 16/127 (12%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKT-----------YIGTKFHRIVKNFVLQGG 61
G I + LFG PKTV NF LA + T Y G FHR+++ F++QGG
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 62 DVVYNDGRGSISIYGDKFDDE-NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
D GRG G KF DE + +++ ++MAN+GP +NG QFFIT+ TP L+
Sbjct: 93 DPT-GTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNR 148
Query: 121 HHTVFGK 127
HT+FG+
Sbjct: 149 RHTIFGE 155
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 142 bits (359), Expect = 7e-44
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 22/132 (16%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRG-- 70
G + V L+ ++ P NF L Y+ T FHR+VK+F++QGGD GRG
Sbjct: 31 GDLDVELWARECPLACRNFVQLC----LEGYYVNTIFHRVVKDFIVQGGDPT-GTGRGGA 85
Query: 71 SISIYGDKFDDE-NFKIKHTGAGFVSMANSGPN--------------SNGCQFFITMSAT 115
+ G FD E + ++K G V +AN G + +NG QFFIT++
Sbjct: 86 DTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARA 145
Query: 116 PWLDGHHTVFGK 127
L+ +T+FGK
Sbjct: 146 DVLNNAYTLFGK 157
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 108 bits (272), Expect = 9e-30
Identities = 33/150 (22%), Positives = 45/150 (30%), Gaps = 39/150 (26%)
Query: 12 EGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGS 71
+ + L G + P T NF L E Y G + R FV+Q GD
Sbjct: 187 DCVFRIVLDGYNAPVTAGNFVDLV----ERHFYDGMEIQR-SDGFVVQTGDPEGPAEGFI 241
Query: 72 --------------------ISIYGDKFDD-----ENFKIKHTGAGFVSMANSG--PNSN 104
YG ++ I G ++MA +S
Sbjct: 242 DPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSG 301
Query: 105 GCQFFI-------TMSATPWLDGHHTVFGK 127
Q F T S + LDG + VFG
Sbjct: 302 SSQVFWLLKESELTPSNSNILDGRYAVFGY 331
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 94.5 bits (236), Expect = 6e-26
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I++ F P+TV+NF Y T FHR++ F++QGG +
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDY----CREGFYNNTIFHRVINGFMIQGGGF---EPGMKQ 61
Query: 73 SIYGDKFDDE-NFKIKHTGAGFVSMA-NSGPNSNGCQFFITMSATPWLDGH--------H 122
+ +E N +K+T G ++MA P+S QFFI + +L+ +
Sbjct: 62 KATKEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGY 120
Query: 123 TVFGK 127
VF +
Sbjct: 121 CVFAE 125
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 93.3 bits (233), Expect = 2e-25
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I + L PKTVENF V+ Y GT FHR++ F++QGG +
Sbjct: 13 GVIKLELDEAKAPKTVENFLNY----VKKGHYDGTIFHRVINGFMIQGGGF---EPGLKQ 65
Query: 73 SIYGDKFDDE-NFKIKHTGAGFVSMA-NSGPNSNGCQFFITMSATPWLDGH--------H 122
+E N +K+ ++MA + P+S QFFI ++ +L+ +
Sbjct: 66 KPTDAPIANEANNGLKND-TYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGY 124
Query: 123 TVFGK 127
VFGK
Sbjct: 125 AVFGK 129
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 91.9 bits (229), Expect = 6e-25
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I + L + P +V+NF V + Y T FHR++ F++QGG +
Sbjct: 14 GNIELELDKQKAPVSVQNFVDY----VNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKK- 68
Query: 73 SIYGDKFDDE-NFKIKHTGAGFVSMA-NSGPNSNGCQFFITMSATPWLDG-----HHTVF 125
+E + +++T G ++MA + +S QFFI ++ +LD + VF
Sbjct: 69 --PNPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVF 125
Query: 126 GK 127
GK
Sbjct: 126 GK 127
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 34.0 bits (78), Expect = 0.005
Identities = 5/21 (23%), Positives = 6/21 (28%)
Query: 107 QFFITMSATPWLDGHHTVFGK 127
T DG +F K
Sbjct: 16 VKPETHINLKVSDGSSEIFFK 36
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.21
Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 37/132 (28%)
Query: 9 GFHEG---RIIVGLFG--KDVP--------KTVENFKTLATVGVENKTYIGTKFHRIVKN 55
GF G + G G + + + E+F + +IG + + N
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 56 F-----VLQGGDVVYNDGRGS----ISIYG-------DKFDDENFKIKHTGAGFVSMANS 99
+L+ D + N G +SI D + N + +S+ N
Sbjct: 317 TSLPPSILE--DSLEN-NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN- 372
Query: 100 GPNSNGCQFFIT 111
G ++
Sbjct: 373 GAK----NLVVS 380
Score = 28.1 bits (62), Expect = 0.94
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 18/83 (21%)
Query: 49 FHR--IVKNFVLQG--GDVVY-----NDGRGSISIYGDKFDDENFKI-KHTGAGFVSMAN 98
F+R ++ V + G Y N GR + S + ++ K TG V + N
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG-WLVEIVN 1845
Query: 99 SGPNSNGCQFFI--TMSATPWLD 119
N Q+ + A LD
Sbjct: 1846 Y--NVENQQYVAAGDLRA---LD 1863
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 27.3 bits (60), Expect = 1.4
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 15 IIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVY--NDGRGSI 72
++G F + + + F+ A + T + K L+ +V + I
Sbjct: 145 KLIGFFKSEESEYYKAFEEAAEHFQPYIKFFATFDKGVAKKLSLKMNEVDFYEPFMDEPI 204
Query: 73 SIYGDKFDDENFK 85
+I + +E
Sbjct: 205 AIPDKPYTEEELV 217
>3mso_A Steroid delta-isomerase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Length = 143
Score = 25.8 bits (56), Expect = 3.5
Identities = 13/63 (20%), Positives = 24/63 (38%)
Query: 11 HEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRG 70
+ G +V + V E+F + + + +F V L+G D++ D G
Sbjct: 49 YAGAPVVSMILNTVLTVFEDFAYHRQLASADGRSVVLEFSARVGERELKGIDMIRFDDDG 108
Query: 71 SIS 73
I
Sbjct: 109 RIV 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 5.0
Identities = 10/77 (12%), Positives = 28/77 (36%), Gaps = 26/77 (33%)
Query: 17 VGLFG---KDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFV--LQGGDV--VYNDGR 69
+ + +D T +N+K + K I+++ + L+ + +++
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNC----------DKLTTIIESSLNVLEPAEYRKMFDR-- 377
Query: 70 GSISIYGDKFDDENFKI 86
+S+ F + I
Sbjct: 378 --LSV----F-PPSAHI 387
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.142 0.439
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,046,655
Number of extensions: 112734
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 52
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)