RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3726
(127 letters)
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6
{Malassezia sympodialis [TaxId: 76777]}
Length = 162
Score = 115 bits (289), Expect = 1e-34
Identities = 65/126 (51%), Positives = 81/126 (64%), Gaps = 1/126 (0%)
Query: 2 YFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGG 61
+FD+ NG G I LF VPKT NF+ L T + Y G+ FHR++ +F+LQGG
Sbjct: 5 FFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTG-EKGFGYAGSHFHRVIPDFMLQGG 63
Query: 62 DVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGH 121
D +G G SIYG KF DENF++KH G +SMAN+GPN+NG QFFIT T WLDG
Sbjct: 64 DFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGK 123
Query: 122 HTVFGK 127
H VFG+
Sbjct: 124 HVVFGE 129
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia
malayi) [TaxId: 6279]}
Length = 174
Score = 107 bits (267), Expect = 3e-31
Identities = 60/133 (45%), Positives = 76/133 (57%), Gaps = 7/133 (5%)
Query: 2 YFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVEN-------KTYIGTKFHRIVK 54
+ D+ +G GRI++ L+ P+T NF L T Y G+ FHR++K
Sbjct: 7 FLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIK 66
Query: 55 NFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSA 114
NF++QGGD DG G SIYG FDDE F +KH VSMAN GPN+NG QFFIT +
Sbjct: 67 NFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTP 126
Query: 115 TPWLDGHHTVFGK 127
P L+ H VFGK
Sbjct: 127 APHLNNIHVVFGK 139
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 3 [TaxId: 6239]}
Length = 172
Score = 106 bits (264), Expect = 8e-31
Identities = 66/133 (49%), Positives = 86/133 (64%), Gaps = 6/133 (4%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVG------VENKTYIGTKFHRIVK 54
++FD+ G GRI++ L+ VPKT NF+ L T + + G+KFHRI+
Sbjct: 6 VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP 65
Query: 55 NFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSA 114
NF++QGGD +G G SIYG+KF DENFK KHTG G +SMAN+GPN+NG QFF+
Sbjct: 66 NFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVK 125
Query: 115 TPWLDGHHTVFGK 127
T WLDG H VFG+
Sbjct: 126 TEWLDGKHVVFGR 138
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans
isomerase-like 2, Cyclophilin-60, PPI domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 105 bits (262), Expect = 2e-30
Identities = 54/116 (46%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G + + L PKT ENF L + Y GT FHR ++NFV+QGGD G G
Sbjct: 10 GDLNLELHCDLTPKTCENFIRLC----KKHYYDGTIFHRSIRNFVIQGGDP-TGTGTGGE 64
Query: 73 SIYGDKFDDE-NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
S +G F DE + HTG G +SMANSGPNSN QFFIT + +LD HT+FG+
Sbjct: 65 SYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGR 120
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus
fumigatus [TaxId: 5085]}
Length = 171
Score = 104 bits (259), Expect = 4e-30
Identities = 67/132 (50%), Positives = 84/132 (63%), Gaps = 6/132 (4%)
Query: 1 MYFDLNYNGFHE-----GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKN 55
++FD+ Y GRI+ LF KDVPKT +NF+ L + Y + FHRI+ N
Sbjct: 4 VFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKR-PAGEGYRESTFHRIIPN 62
Query: 56 FVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSAT 115
F++QGGD +G G SIYGDKF DENF KH G +SMAN+GPN+NG QFFIT + T
Sbjct: 63 FMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVT 122
Query: 116 PWLDGHHTVFGK 127
WLDG H VFG+
Sbjct: 123 SWLDGKHVVFGE 134
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 195
Score = 102 bits (256), Expect = 2e-29
Identities = 65/134 (48%), Positives = 83/134 (61%), Gaps = 7/134 (5%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVEN-------KTYIGTKFHRIV 53
++FD++ G GRI++ LF VPKT ENF+ L T + G FHRI+
Sbjct: 17 VFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRII 76
Query: 54 KNFVLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMS 113
K F++QGGD +G G SIYG+KF+DENF KH G +SMAN+G N+NG QFFIT
Sbjct: 77 KKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTV 136
Query: 114 ATPWLDGHHTVFGK 127
TP LDG H VFG+
Sbjct: 137 PTPHLDGKHVVFGQ 150
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like
1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 101 bits (253), Expect = 3e-29
Identities = 60/116 (51%), Positives = 82/116 (70%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I++ L+ K PKT +NF LA G N T KFHRI+K+F++QGGD GRG
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELARRGYYNGT----KFHRIIKDFMIQGGDP-TGTGRGGA 75
Query: 73 SIYGDKFDDE-NFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
SIYG +F+DE + +K TGAG ++MAN+GP++NG QFF+T++ T WLDG HT+FG+
Sbjct: 76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGR 131
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
falciparum [TaxId: 5833]}
Length = 170
Score = 100 bits (249), Expect = 1e-28
Identities = 62/130 (47%), Positives = 80/130 (61%), Gaps = 5/130 (3%)
Query: 2 YFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVG-----VENKTYIGTKFHRIVKNF 56
+FD++ + + GRII LF P+T ENF+ L T +N Y + FHRI+ F
Sbjct: 7 FFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQF 66
Query: 57 VLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATP 116
+ QGGD+ +G G SIYG F DENF +KH G +SMAN+GPN+N QFFIT+ P
Sbjct: 67 MCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCP 126
Query: 117 WLDGHHTVFG 126
WLDG H VFG
Sbjct: 127 WLDGKHVVFG 136
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans
isomerase, cyclophilin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 99.5 bits (247), Expect = 3e-28
Identities = 62/126 (49%), Positives = 82/126 (65%), Gaps = 1/126 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+Y D++ NG GR+++ L VPKT ENF+ L T + Y G+ FHR++ +F+ Q
Sbjct: 5 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGE-KGFGYKGSTFHRVIPSFMCQA 63
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG +F DENF +KH G G +SMAN+GPN+NG QFFI T WLDG
Sbjct: 64 GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 123
Query: 121 HHTVFG 126
H VFG
Sbjct: 124 KHVVFG 129
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium
yoelii [TaxId: 5861]}
Length = 186
Score = 97.6 bits (242), Expect = 3e-27
Identities = 65/131 (49%), Positives = 84/131 (64%), Gaps = 4/131 (3%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENK----TYIGTKFHRIVKNF 56
++ D+N G+ LF VPKT ENF+ T + Y T FHR++K F
Sbjct: 19 VFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEF 78
Query: 57 VLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATP 116
++QGGD + ++G GS+SIYG+KFDDENF IKH G +SMANSGPN+NGCQFFIT
Sbjct: 79 MIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCE 138
Query: 117 WLDGHHTVFGK 127
WLDG + VFG+
Sbjct: 139 WLDGKNVVFGR 149
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
musculus), variant C [TaxId: 10090]}
Length = 182
Score = 97.2 bits (241), Expect = 3e-27
Identities = 71/126 (56%), Positives = 90/126 (71%), Gaps = 1/126 (0%)
Query: 2 YFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGG 61
+FD+ GRI++GLFG VPKTVENF LAT Y G+ FHR++K+F++QGG
Sbjct: 11 FFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGY-GYKGSIFHRVIKDFMIQGG 69
Query: 62 DVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGH 121
D DG G +SIYG+ F DENFK+KH G G+VSMAN+GP++NG QFFIT++ WLDG
Sbjct: 70 DFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGK 129
Query: 122 HTVFGK 127
H VFGK
Sbjct: 130 HVVFGK 135
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl
cis-trans isomerase, cyclophilin F {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 94.6 bits (234), Expect = 2e-26
Identities = 65/127 (51%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+Y D+ GRI + L VP T ENF+ L T + + G+ FHRI+ F+ QG
Sbjct: 4 VYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTH-EKGFGFKGSSFHRIIPQFMCQG 62
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD ++G G SIYG KFDDENF +KHTG G +SMANSGPN+NG QFF+T T WLDG
Sbjct: 63 GDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDG 122
Query: 121 HHTVFGK 127
H VFG+
Sbjct: 123 KHVVFGE 129
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 5 [TaxId: 6239]}
Length = 182
Score = 94.5 bits (234), Expect = 4e-26
Identities = 73/126 (57%), Positives = 91/126 (72%), Gaps = 1/126 (0%)
Query: 2 YFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGG 61
YFD+ G GRI++GLFGK VPKT NF LA + + Y G+KFHR++ +F++QGG
Sbjct: 10 YFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKK-PKGEGYPGSKFHRVIADFMIQGG 68
Query: 62 DVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGH 121
D DG G SIYG+KF DENFK+KH GAG++SMAN+G ++NG QFFIT TPWLDG
Sbjct: 69 DFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGR 128
Query: 122 HTVFGK 127
H VFGK
Sbjct: 129 HVVFGK 134
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 159
Score = 93.7 bits (232), Expect = 5e-26
Identities = 48/115 (41%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I + +F + PKT ENF L + Y G FHR +K F++Q GD G+
Sbjct: 10 GDIKIEVFCERTPKTCENFLALC----ASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNS 65
Query: 73 SIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
D+ + +KH G VSMAN+GPN+NG QFFIT P LD +TVFGK
Sbjct: 66 IWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGK 120
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo
sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20
[TaxId: 9606]}
Length = 173
Score = 93.8 bits (232), Expect = 6e-26
Identities = 66/131 (50%), Positives = 85/131 (64%), Gaps = 4/131 (3%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKT----YIGTKFHRIVKNF 56
++FD++ G GR+ + LF VPKT ENF+ T Y G+ FHR++K+F
Sbjct: 9 VFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDF 68
Query: 57 VLQGGDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATP 116
++QGGD V DG G SIY F DENFK++H+ G +SMANSGP++NGCQFFIT S
Sbjct: 69 MIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCD 128
Query: 117 WLDGHHTVFGK 127
WLDG H VFGK
Sbjct: 129 WLDGKHVVFGK 139
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi
[TaxId: 5693]}
Length = 166
Score = 93.4 bits (231), Expect = 6e-26
Identities = 75/127 (59%), Positives = 91/127 (71%), Gaps = 2/127 (1%)
Query: 1 MYFDLNYNGFHEGRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQG 60
+YFD+ GR+++GLFG DVPKTVENFK LA+ Y G+ FHR+++NF++QG
Sbjct: 8 VYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASG-ENGFGYKGSIFHRVIRNFMIQG 66
Query: 61 GDVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDG 120
GD DG G SIYG +FDDEN KIKH G VSMAN+GPNSNG QFF+T + TPWLDG
Sbjct: 67 GDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPWLDG 125
Query: 121 HHTVFGK 127
H VFGK
Sbjct: 126 RHVVFGK 132
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 171
Score = 85.7 bits (211), Expect = 9e-23
Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 14/126 (11%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKT-----------YIGTKFHRIVKNFVLQGG 61
G I + LFG PKTV NF LA + T Y G FHR+++ F++QGG
Sbjct: 13 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 72
Query: 62 DVVYNDGRGSISIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGH 121
D G G D+ + +++ ++MAN+GP +NG QFFIT+ TP L+
Sbjct: 73 DP---TGTGRGGPGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 129
Query: 122 HTVFGK 127
HT+FG+
Sbjct: 130 HTIFGE 135
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693
{Plasmodium yoelii [TaxId: 5861]}
Length = 169
Score = 78.0 bits (191), Expect = 8e-20
Identities = 51/115 (44%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G V L+ PKT NF TL +G Y T FHR++ NFV+QGGD G
Sbjct: 26 GDFEVELYWYHSPKTCLNFYTLCEMG----FYDNTIFHRVIPNFVIQGGDPTGTGKGGKS 81
Query: 73 SIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
D+ N ++KHTGAG +SM+N+GPN+N QFFIT++ P LDG HT+F +
Sbjct: 82 IYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFAR 136
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD
repeat-containing protein 1, PPWD1, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 75.8 bits (185), Expect = 4e-19
Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I LF + PKTVENF + G N FHRI+K F++Q GD G
Sbjct: 19 GDIHTKLFPVECPKTVENFCVHSRNGYYNGH----TFHRIIKGFMIQTGDPTGTGMGGES 74
Query: 73 SIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
G+ D+ + ++H +SMAN+G N+NG QFFIT+ TPWLD HTVFG+
Sbjct: 75 IWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGR 129
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w
{Plasmodium falciparum [TaxId: 5833]}
Length = 155
Score = 72.3 bits (176), Expect = 1e-17
Identities = 48/116 (41%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I + LF K+ KTV+NF + G N + DG G
Sbjct: 11 GDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQ-----TGDPSGDGTGGE 65
Query: 73 SIYGDKFDDENFKIKHTGAGF-VSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
SI+G++F+DE F + F VSMAN GPN+NG QFFIT PWLD HTVFGK
Sbjct: 66 SIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGK 121
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 66.5 bits (161), Expect = 2e-15
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 14/123 (11%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I++ F P+TV+NF Y T FHR++ F++QGG +
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC----REGFYNNTIFHRVINGFMIQGGGFEPGMKQK-- 62
Query: 73 SIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMS--------ATPWLDGHHTV 124
+ ++ N +K+T P+S QFFI + + V
Sbjct: 63 ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCV 122
Query: 125 FGK 127
F +
Sbjct: 123 FAE 125
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 166
Score = 58.4 bits (140), Expect = 2e-12
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 6/115 (5%)
Query: 13 GRIIVGLFGKDVPKTVENFKTLATVGVENKTYIGTKFHRIVKNFVLQGGDVVYNDGRGSI 72
G I + L + P +V+NF V + Y T FHR++ F++QGG +
Sbjct: 14 GNIELELDKQKAPVSVQNFVDY----VNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKP 69
Query: 73 SIYGDKFDDENFKIKHTGAGFVSMANSGPNSNGCQFFITMSATPWLDGHHTVFGK 127
+ D ++T + +S QFFI ++ +LD FG
Sbjct: 70 NPPIKNEADNGL--RNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGY 122
>d2paga1 d.369.1.1 (A:1-135) Hypothetical protein PSPTO5518
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 135
Score = 23.7 bits (51), Expect = 5.7
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 45 IGTKFHRIVKNFVLQGGDVVYNDGRGSISIYG 76
+ + K F+L DVVY GS+
Sbjct: 34 LFINIPFVFKEFLLTVSDVVY----GSLEPVT 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.142 0.439
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 503,587
Number of extensions: 21464
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 36
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)