BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3727
(232 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|427792669|gb|JAA61786.1| Putative splicing factor hnrnp-f, partial [Rhipicephalus
pulchellus]
Length = 302
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 111/172 (64%), Gaps = 26/172 (15%)
Query: 1 MRPVSGGFGRPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGG--FRGGFNNDRWNDRPG 58
MRP+ G RP PYDR +RFGG GP R G RGG FRG D + D
Sbjct: 95 MRPM--GSARPGPYDRAERFGG----------GPSRYGMGRGGRNFRGFVEEDGYAD--- 139
Query: 59 GFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPS 117
F G G R+ + H VHMRGLPFRA ERD+ +FF+P+ P++V + YE+ GRPS
Sbjct: 140 -FGGSGGGARF-----SATGHFVHMRGLPFRATERDIFEFFQPMNPINVHLIYEDSGRPS 193
Query: 118 GEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFG 169
GE DV+FATHE+A++AMSKD+ +MQHRYIELFLN S+P G GS + GGFG
Sbjct: 194 GECDVEFATHEEAVKAMSKDKAHMQHRYIELFLN-STPSGLNSGSNA-GGFG 243
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 113 NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
GR +GEA V FAT + A +AM K + + HRYIE+F +S
Sbjct: 40 QGRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSS 79
>gi|427789699|gb|JAA60301.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 411
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 111/172 (64%), Gaps = 26/172 (15%)
Query: 1 MRPVSGGFGRPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGG--FRGGFNNDRWNDRPG 58
MRP+ G RP PYDR +RFGG GP R G RGG FRG D + D
Sbjct: 204 MRPM--GSARPGPYDRAERFGG----------GPSRYGMGRGGRNFRGFVEEDGYAD--- 248
Query: 59 GFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPS 117
F G G R+ + H VHMRGLPFRA ERD+ +FF+P+ P++V + YE+ GRPS
Sbjct: 249 -FGGSGGGARF-----SATGHFVHMRGLPFRATERDIFEFFQPMNPINVHLIYEDSGRPS 302
Query: 118 GEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFG 169
GE DV+FATHE+A++AMSKD+ +MQHRYIELFLN S+P G GS + GGFG
Sbjct: 303 GECDVEFATHEEAVKAMSKDKAHMQHRYIELFLN-STPSGLNSGSNA-GGFG 352
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 12/112 (10%)
Query: 60 FAGPRPGGRWVNESSGPSRH------TVHMRGLPFRANERDVADFFR--PVVP--VHVDI 109
F R WV + SG + V +RGLPF ++ ++A FF +VP + +
Sbjct: 87 FKSKRSEMDWVVKRSGAHQQDSLNDGCVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPT 146
Query: 110 HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS-SSPRGGVG 160
Y+ GR +GEA V FAT + A +AM K + + HRYIE+F +S R VG
Sbjct: 147 DYQ-GRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEIRSAVG 197
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRP--------VVPVHVDIHYENGRPSGEADVDFATHEDAM 131
+ +RGLP+ + ++ +FF + VH+ + E GRPSGEA ++ + +D
Sbjct: 11 VLRIRGLPWSTTKEEILNFFTSKECHIKGGINGVHMTLSRE-GRPSGEAYIELESEQDME 69
Query: 132 QAMSKDRTNMQHRYIELFLNSSS 154
+ + ++ HRYIE+F + S
Sbjct: 70 IGLQRHNEHIGHRYIEVFKSKRS 92
>gi|346465413|gb|AEO32551.1| hypothetical protein [Amblyomma maculatum]
Length = 434
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 101/156 (64%), Gaps = 24/156 (15%)
Query: 1 MRPVSGGFGRPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGG--FRGGFNNDRWNDRPG 58
MRP+ G GRP PYDR +RFGG GP R G RGG FRG D + D
Sbjct: 227 MRPM--GTGRPGPYDRVERFGG----------GPSRYGMGRGGRNFRGFVEEDGYGD--- 271
Query: 59 GFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPS 117
F G G + + H VHMRGLPFRA ERD+ +FF+P+ PV+V YE+ GRPS
Sbjct: 272 -FGGSVGGSHF-----SATGHFVHMRGLPFRATERDIFEFFQPMNPVNVHFIYEDSGRPS 325
Query: 118 GEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
GE DV+FATHE+A++AMSKD+ +MQHRYIELFLNS+
Sbjct: 326 GECDVEFATHEEAVKAMSKDKAHMQHRYIELFLNST 361
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 12/112 (10%)
Query: 60 FAGPRPGGRWVNESSGPSRH------TVHMRGLPFRANERDVADFFR--PVVP--VHVDI 109
F R WV + SG + V +RGLPF ++ ++A FF +VP + +
Sbjct: 110 FKSKRSEMDWVVKRSGAHQQDSLNDGCVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPT 169
Query: 110 HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS-SSPRGGVG 160
Y+ GR +GEA V FAT + A +AM K + + HRYIE+F +S R VG
Sbjct: 170 DYQ-GRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEIRSAVG 220
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRP--------VVPVHVDIHYENGRPSGEADVDFATHEDAM 131
+ +RGLP+ + ++ +FF + VH+ + E GRPSGEA ++ + +D
Sbjct: 34 VLRIRGLPWSTTKEEILNFFTSKECHIKGGINGVHMTLSRE-GRPSGEAYIELESEQDVE 92
Query: 132 QAMSKDRTNMQHRYIELFLNSSSPRGGV 159
+ + ++ HRYIE+F + S V
Sbjct: 93 IGLQRHNEHIGHRYIEVFKSKRSEMDWV 120
>gi|383858866|ref|XP_003704920.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Megachile rotundata]
Length = 412
Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 102/176 (57%), Gaps = 46/176 (26%)
Query: 1 MRPVSGGFG-RPAPYDRNDRFGGANRF---GGGSGPGPIRGGPPRGG------------- 43
MR GGF RPAPYDR RFGG NRF G GS GGP G
Sbjct: 211 MRGPMGGFNQRPAPYDRGARFGGMNRFSNNGRGSRNRDFDGGPWGGNNFDSRGGGMGMRG 270
Query: 44 -------FRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVA 96
FRG N D W GG G H++HMRGLPF+A E+D+A
Sbjct: 271 GMDMKGNFRG--NGDAW------------GG-------GSGIHSIHMRGLPFKATEQDIA 309
Query: 97 DFFRPVVPVHVDIHYENG-RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLN 151
DFFRP+ PV+V I ENG RPSGEADV+FATHE+AM+AMSKD+++M HRYIELFLN
Sbjct: 310 DFFRPIEPVNVRIILENGGRPSGEADVEFATHEEAMKAMSKDKSHMSHRYIELFLN 365
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQ 132
+ V +RGLP+ ++ FF VH+ + E GRPSGEA V+ T ED +
Sbjct: 13 YVVKLRGLPWSTTVDEIMKFFSDCSISNGKNGVHMTMSRE-GRPSGEAYVEMDTPEDIEK 71
Query: 133 AMSKDRTNMQHRYIELF 149
A +DR +M HRYIE+F
Sbjct: 72 ACKRDRDHMGHRYIEVF 88
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 22/131 (16%)
Query: 60 FAGPRPGGRWVNESSGPSRH------TVHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SG + V +RGLPF ++ ++A FF ++P + +
Sbjct: 88 FKAKRGEMEWVVKRSGFNLENAMDDACVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPT 147
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHR----------YIELFLNS-SSPRGGV 159
+ GR +GEA V F + A +A+ K + + HR YIE+F ++ S R +
Sbjct: 148 DYTGRSTGEAYVQFVNKDVAERALQKHKEKIGHRWGTDXLAGFGYIEIFRSTLSEVRASI 207
Query: 160 G--GSGSIGGF 168
G G +GGF
Sbjct: 208 GPKMRGPMGGF 218
>gi|380029403|ref|XP_003698363.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Apis florea]
Length = 413
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 103/167 (61%), Gaps = 26/167 (15%)
Query: 1 MRPVSGGFG-RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPR---GGFRGGFNN------ 50
MR GGF RPAPYDR RFGG NRF S RG R GG G NN
Sbjct: 211 MRGPMGGFNQRPAPYDRGSRFGGMNRFSNNS-----RGSRNRDFDGGPWGSGNNFDSRGG 265
Query: 51 -----DRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPV 105
+ + G F G G W S H++HMRGLPF+A E+D+ADFFRP+ PV
Sbjct: 266 SMGMRGGLDMKGGNFRGS--GDTWGGNSG---IHSIHMRGLPFKATEQDIADFFRPIEPV 320
Query: 106 HVDIHYENG-RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLN 151
+V I ENG RPSGEADV+FATHE+A++AMSKD+++M HRYIELFLN
Sbjct: 321 NVRIILENGGRPSGEADVEFATHEEAVKAMSKDKSHMSHRYIELFLN 367
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQ 132
+ V +RGLP+ ++ FF VH+ + E GRPSGEA V+ T ED +
Sbjct: 13 YVVKLRGLPWSTTVDEIMKFFSDCSITNGKNGVHMTMSRE-GRPSGEAYVEMDTLEDIEK 71
Query: 133 AMSKDRTNMQHRYIELF 149
A +DR +M HRYIE+F
Sbjct: 72 ACKRDRDHMGHRYIEVF 88
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 22/131 (16%)
Query: 60 FAGPRPGGRWVNESSGPSRH------TVHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SG + V +RGLPF ++ ++A FF ++P + +
Sbjct: 88 FKAKRGEMEWVVKRSGMNLENAMDDGCVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPT 147
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHR----------YIELFLNS-SSPRGGV 159
+ GR +GEA V F + A +A+ K + + HR YIE+F +S S R +
Sbjct: 148 DYTGRSTGEAYVQFVNKDVAERALQKHKEKIGHRWGTDXLAGFGYIEIFRSSLSEVRASI 207
Query: 160 G--GSGSIGGF 168
G G +GGF
Sbjct: 208 GPKMRGPMGGF 218
>gi|442746139|gb|JAA65229.1| Putative splicing factor hnrnp-f, partial [Ixodes ricinus]
Length = 206
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 102/154 (66%), Gaps = 22/154 (14%)
Query: 1 MRPVSGGFGRPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGGFNNDRWNDRPGGF 60
MRP+ G RP PYDR DRFGG +R+G G RGG FRG D + D
Sbjct: 54 MRPL--GTARPGPYDRGDRFGGPSRYGMG------RGGR---NFRGFVEEDGYGD----- 97
Query: 61 AGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGE 119
G G R+ + H VHMRGLPFRA ERD+ +FF+P+ P++V + YE+ GRPSGE
Sbjct: 98 FGGSGGARY-----SATGHFVHMRGLPFRATERDIFEFFQPMNPMNVHLIYEDSGRPSGE 152
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
DV+FATHE+A++AMSKD+ +MQHRYIELFLNS+
Sbjct: 153 CDVEFATHEEAVKAMSKDKAHMQHRYIELFLNST 186
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 115 RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS-SSPRGGVG 160
R +GEA V FAT + A +AM K + + HRYIE+F +S R VG
Sbjct: 1 RSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEIRSAVG 47
>gi|346473523|gb|AEO36606.1| hypothetical protein [Amblyomma maculatum]
Length = 412
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 98/156 (62%), Gaps = 24/156 (15%)
Query: 1 MRPVSGGFGRPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGG--FRGGFNNDRWNDRPG 58
MRP+ G RP PYDR DRFGG GP R G RGG FRG D + G
Sbjct: 204 MRPMGGA--RPGPYDRADRFGG----------GPSRYGMGRGGRNFRGFVEEDGYGGFGG 251
Query: 59 GFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPS 117
G + H VHMRGLPFRA ERD+ +FF+P+ PV+V + YE+ GRPS
Sbjct: 252 PGGGAHFSA---------TGHFVHMRGLPFRATERDIFEFFQPMNPVNVHLIYEDSGRPS 302
Query: 118 GEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
GE DV+FATHE+A++AMSKD+ +MQHRYIELFLNS+
Sbjct: 303 GECDVEFATHEEAVKAMSKDKAHMQHRYIELFLNST 338
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 12/112 (10%)
Query: 60 FAGPRPGGRWVNESSGPSRH------TVHMRGLPFRANERDVADFFR--PVVP--VHVDI 109
F R WV + SG + V +RGLPF ++ ++A FF +VP + +
Sbjct: 87 FKSKRSEMDWVVKRSGAHQQDSLNDGCVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPT 146
Query: 110 HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS-SSPRGGVG 160
Y+ GR +GEA V FAT + A +AM K + + HRYIE+F +S R +G
Sbjct: 147 DYQ-GRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEVRSAIG 197
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRP--------VVPVHVDIHYENGRPSGEADVDFATHEDAM 131
+ +RGLP+ + ++ +FF + VH+ + E GRPSGEA ++ + +D
Sbjct: 11 VLRIRGLPWSTTKEEILNFFTSKECNIKGGINGVHMTLSRE-GRPSGEAYIELESEQDVE 69
Query: 132 QAMSKDRTNMQHRYIELFLNSSSPRGGV 159
+ + ++ HRYIE+F + S V
Sbjct: 70 VGLQRHNEHIGHRYIEVFKSKRSEMDWV 97
>gi|340722803|ref|XP_003399791.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Bombus terrestris]
gi|350424200|ref|XP_003493719.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Bombus impatiens]
Length = 414
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/164 (51%), Positives = 101/164 (61%), Gaps = 25/164 (15%)
Query: 3 PVSGGFGRPAPYDRNDRFGGANRFGGGSGPGPIRGGPPR---GGFRGGFNN--------- 50
P+ G RPAPYDR RFGG NRF S RG R GG G NN
Sbjct: 215 PMGGFNQRPAPYDRGSRFGGMNRFSNNS-----RGSRNRDFDGGPWGSGNNFDSRGGSMG 269
Query: 51 --DRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVD 108
+ + G F G G W S H++HMRGLPF+A E+D+ADFFRP+ PV+V
Sbjct: 270 MRGGLDMKGGNFRG--SGDTWGGNS---GIHSIHMRGLPFKATEQDIADFFRPIEPVNVR 324
Query: 109 IHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLN 151
I EN GRPSGEADV+FATHE+A++AMSKD+++M HRYIELFLN
Sbjct: 325 IILENGGRPSGEADVEFATHEEAVKAMSKDKSHMSHRYIELFLN 368
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQ 132
+ V +RGLP+ ++ FF VH+ + E GRPSGEA V+ T ED +
Sbjct: 13 YVVKLRGLPWSTTVDEIMKFFSDCSITNGKNGVHMTMSRE-GRPSGEAYVEMDTLEDIEK 71
Query: 133 AMSKDRTNMQHRYIELF 149
A +DR +M HRYIE+F
Sbjct: 72 ACKRDRDHMGHRYIEVF 88
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 23/132 (17%)
Query: 60 FAGPRPGGRWVNESSGPSRH------TVHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SG + V +RGLPF ++ ++A FF ++P + +
Sbjct: 88 FKAKRGEMEWVVKRSGMNLENAMDDGCVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPT 147
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHR----------YIELFLNS-SSPRGGV 159
+ GR +GEA V F + A +A+ K + + HR YIE+F +S S R +
Sbjct: 148 DYTGRSTGEAYVQFVNKDVAERALQKHKEKIGHRWGTDXLAGFGYIEIFRSSLSEVRASI 207
Query: 160 GGS---GSIGGF 168
G G +GGF
Sbjct: 208 GPKMRGGPMGGF 219
>gi|126328016|ref|XP_001371380.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Monodelphis domestica]
Length = 468
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 92/155 (59%), Gaps = 10/155 (6%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRG-----GFNND----RWNDRPGGF 60
RP PYDR G + G G G +R G G+RG +N+D R+ +
Sbjct: 206 RPGPYDRPQAGRGYSTLGRGVGFAGMRCGAYEAGYRGYDDYNWYNDDYCFGRYLNYYLAM 265
Query: 61 AGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGE 119
+G G W P+ H VHMRGLP++A E D+ DFF P+ PV I +GR +GE
Sbjct: 266 SGHSYGDSWSTFHQSPAGHYVHMRGLPYKATENDICDFFSPLKPVGAYIEIGSDGRVTGE 325
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
ADV+FATHEDA+ AMSKD+ NMQHRYIELFLNS++
Sbjct: 326 ADVEFATHEDAVAAMSKDKANMQHRYIELFLNSTT 360
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 15/98 (15%)
Query: 69 WVNESSGP------SRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRP 116
WV + + P S V +RGLPFR N+ ++ FF + + + VD GR
Sbjct: 95 WVLKHTAPNSLDTASDGFVRLRGLPFRCNKEEIVQFFSGLEIMPNGITLPVDFQ---GRN 151
Query: 117 SGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
SGEA V FA+ E A +A+ K + + HRYIE+F +S +
Sbjct: 152 SGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSQA 189
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G V +RGLP+ + D+ FF +H I+ GRPSGEA V+ +
Sbjct: 5 TKGEEGFVVKVRGLPWSCSASDIQQFFSECKIQNGAAGIHF-IYTREGRPSGEAFVELES 63
Query: 127 HEDAMQAMSKDRTNMQHRYIELF 149
++ A+ KDR M HRY+E+F
Sbjct: 64 EDEVTLALKKDRETMGHRYVEVF 86
>gi|307176277|gb|EFN65908.1| Heterogeneous nuclear ribonucleoprotein H2 [Camponotus floridanus]
Length = 417
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 100/175 (57%), Gaps = 47/175 (26%)
Query: 3 PVSGGFGRPAPYDRNDRFGGANRF---GGGSGPGPIRGGPPRGG---------------- 43
P+ G RPAPY R DRFGG NRF G GS GP G
Sbjct: 217 PMGGFNQRPAPYTRGDRFGGMNRFSNNGRGSRNRDFDSGPWGSGNNYGSRGGNMGMRGGM 276
Query: 44 ------FRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVAD 97
+RG NND W GG +G H++HMRGLPF+A E+D+AD
Sbjct: 277 DMKGNNYRG--NNDSW----GGNSGV---------------HSIHMRGLPFKATEQDIAD 315
Query: 98 FFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLN 151
FFRP+ PV+V I EN GRPSGEADV+FATHE+A++AM KD+++M HRYIELFLN
Sbjct: 316 FFRPIEPVNVRIILENGGRPSGEADVEFATHEEAVKAMCKDKSHMSHRYIELFLN 370
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQ 132
+ V MRGLP+ ++ FF VH+ + E GRPSGEA V+ T ED +
Sbjct: 13 YVVKMRGLPWSTTVDEIMKFFGDCSISNGKNGVHMTMSRE-GRPSGEAYVEMDTPEDIEK 71
Query: 133 AMSKDRTNMQHRYIELF 149
A +DR +M HRYIE+F
Sbjct: 72 ACKRDRDHMGHRYIEVF 88
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 25/134 (18%)
Query: 60 FAGPRPGGRWVNESSGPSRH------TVHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SG + V +RGLPF ++ ++A FF ++P + +
Sbjct: 88 FKAKRGEMEWVVKRSGLNLENAMDDGCVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPT 147
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHR------------YIELFLNS-SSPRG 157
+ GR +GEA V F + A +A+ K + + HR YIE+F +S S R
Sbjct: 148 DYTGRSTGEAYVQFVNKDVAERALQKHKEKIGHRWGTETLYIAGFGYIEIFRSSLSEVRA 207
Query: 158 GVGGS---GSIGGF 168
+G G +GGF
Sbjct: 208 SIGPKMRGGPMGGF 221
>gi|242007190|ref|XP_002424425.1| Heterogeneous nuclear ribonucleoprotein F, putative [Pediculus
humanus corporis]
gi|212507825|gb|EEB11687.1| Heterogeneous nuclear ribonucleoprotein F, putative [Pediculus
humanus corporis]
Length = 412
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 107/181 (59%), Gaps = 29/181 (16%)
Query: 2 RPVSGGFGRPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGGFNNDRWND------ 55
R ++G RPAPYD DRFGG NRF G G GGP G G ++N R+N+
Sbjct: 197 RGMTGFMNRPAPYDARDRFGGPNRFRNMGGGGGGGGGPNGMGHDGPWSNGRFNNDNFSGG 256
Query: 56 ---------------------RPGGFAGPRPGGRWVNESSGPSR-HTVHMRGLPFRANER 93
GF GG + GPS H +HMRGLPFRA ++
Sbjct: 257 FGGGIGPMGGFGGGNFGGNGGLFDGFNNMSGGGGSGFNNMGPSSAHCIHMRGLPFRATKQ 316
Query: 94 DVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
DVADFFRPV+P+ +D+ E+ GRPSGEADV+F TH+DA+ AMSK++ +MQHRYIELFLNS
Sbjct: 317 DVADFFRPVIPLSIDLLTEDDGRPSGEADVEFRTHDDAVLAMSKNKNHMQHRYIELFLNS 376
Query: 153 S 153
+
Sbjct: 377 T 377
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SG + T V +RGLPF ++ ++A FF +VP + +
Sbjct: 84 FKSKRSEMDWVIKRSGSNLETALDDGCVRLRGLPFGCSKEEIAQFFTGLEIVPNGITLPM 143
Query: 112 EN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
++ GR +GEA V F + A +A+ K + + HRYIE+F +S
Sbjct: 144 DSRGRSTGEAYVQFKNKDIAEKALLKHKEKIAHRYIEIFRSS 185
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFA 125
E+ G S + + MRGLP+ + ++ FF VH+ I GRPSGEA V+
Sbjct: 3 ENDGDS-YVIKMRGLPWSTTDEEILKFFNNCKVKNGKEGVHI-IMTREGRPSGEAYVEME 60
Query: 126 THEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
T +D +A+ KDR M RY+E+F + S V
Sbjct: 61 TDQDIEEALKKDRDYMGTRYMEVFKSKRSEMDWV 94
>gi|307203918|gb|EFN82825.1| Heterogeneous nuclear ribonucleoprotein H2 [Harpegnathos saltator]
Length = 388
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 96/169 (56%), Gaps = 35/169 (20%)
Query: 3 PVSGGFGRPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGGFNNDRWNDRPGGFAG 62
P+ G RPAPY R DRFGG NRF RG F+N W + G G
Sbjct: 189 PMGGFNQRPAPYTRGDRFGGMNRFSNNG----------RGSRNRDFDNGPWGN--GSNYG 236
Query: 63 PR-------------------PGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVV 103
R G W S H++HMRGLPF+A E+D+ADFFRP+
Sbjct: 237 SRGGNMGMRGGMDMKGGNYRGSGDSWGGNS---GVHSIHMRGLPFKATEQDIADFFRPIE 293
Query: 104 PVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLN 151
PV+V I EN GRPSGEADV+FATHE+A++AM KD+++M HRYIELFLN
Sbjct: 294 PVNVRIILENGGRPSGEADVEFATHEEAVKAMCKDKSHMLHRYIELFLN 342
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 60 FAGPRPGGRWVNESSGPSRH------TVHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SG + V +RGLPF ++ ++A FF ++P + +
Sbjct: 72 FKAKRGEMEWVVKRSGLNLENAMDDGCVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPT 131
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS-SSPRGGVGGS---GSIG 166
+ GR +GEA V F + A +A+ K + + HRYIE+F +S S R +G G +G
Sbjct: 132 DYTGRSTGEAYVQFVNKDVAERALQKHKEKIGHRYIEIFRSSLSEVRASIGPKMRGGPMG 191
Query: 167 GF 168
GF
Sbjct: 192 GF 193
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 83 MRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
MRGLP+ ++ FF VH+ + E GRPSGEA V+ T ED +A +
Sbjct: 1 MRGLPWSTTVDEIIKFFADCSISNGKNGVHMTMSRE-GRPSGEAYVEMDTPEDIEKACKR 59
Query: 137 DRTNMQHRYIELF 149
DR +M HRYIE+F
Sbjct: 60 DRDHMGHRYIEVF 72
>gi|126328002|ref|XP_001371131.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Monodelphis domestica]
Length = 466
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 90/153 (58%), Gaps = 10/153 (6%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGGFNNDRWNDRPGGF--------A 61
RP PYDR G + G G G +R G G+RG +++ W + F +
Sbjct: 206 RPGPYDRPQAGRGYSTLGRGVGFAGMRCGAYEAGYRG-YDDYNWYNDDYCFGRYLNLEMS 264
Query: 62 GPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEA 120
G W + P+ H VHMRGLP++A E D+ DFF P+ PV I +GR +GEA
Sbjct: 265 DHSYGDSWSTFNQSPAGHYVHMRGLPYKATENDICDFFSPLKPVGAYIEIGPDGRVTGEA 324
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
DV+FATHEDA+ AMSKD+ NMQHRYIELFLNS+
Sbjct: 325 DVEFATHEDAVAAMSKDKANMQHRYIELFLNST 357
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 15/98 (15%)
Query: 69 WVNESSGP------SRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRP 116
WV + + P S V +RGLPFR N+ ++ FF + + + VD GR
Sbjct: 95 WVLKHTAPNSLDTASDGFVRLRGLPFRCNKEEIVQFFSGLEIMPNGITLPVDFQ---GRN 151
Query: 117 SGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
SGEA V FA+ E A +A+ K++ + HRYIE+F +S +
Sbjct: 152 SGEAFVQFASQEIAEKALKKNKETIGHRYIEIFKSSQA 189
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATH 127
+ G V +RGLP+ + D+ FF ++ + IH+ G+ SGEA V+ +
Sbjct: 5 TKGEEGFVVKVRGLPWSCSASDIQQFFSECKILNEEAGIHFVYTREGKLSGEAFVELKSE 64
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
++ A+ KDR M HRY+E+F +S+ V
Sbjct: 65 DEITLALKKDRETMGHRYVEVFRSSNIEMDWV 96
>gi|322801457|gb|EFZ22118.1| hypothetical protein SINV_07549 [Solenopsis invicta]
Length = 425
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 100/172 (58%), Gaps = 24/172 (13%)
Query: 3 PVSGGFGRPAPYDRNDRFGGANRFGGGSGPGPIRGGP--------PRGGFRGGFNNDRWN 54
P+ G RPAPY R DRFGG NRF RG R G + F+N W
Sbjct: 236 PMGGFNQRPAPYTRGDRFGGMNRFSNNGRGSRNRGDSFHLSKYEDNRAG-KYHFDNGPWG 294
Query: 55 D-----RPGGFAGPR-----PGGRWV----NESSGPSRHTVHMRGLPFRANERDVADFFR 100
GG G R GG + N +++HMRGLPF+A E+D+ADFFR
Sbjct: 295 SGNNYGSRGGNMGMRGSMDMKGGNYRGNNDNWGGNSGVYSIHMRGLPFKATEQDIADFFR 354
Query: 101 PVVPVHVDIHYENG-RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLN 151
P+ PV+V I ENG RPSGEADV+FATHE+A++AM KD+++M HRYIELF+N
Sbjct: 355 PIEPVNVRIILENGGRPSGEADVEFATHEEALKAMCKDKSHMSHRYIELFMN 406
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 73 SSGPSRH-----TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEAD 121
SSG + H V +RGLP+ ++ FF VH+ E GRPSGEA
Sbjct: 2 SSGSAEHEEEGYVVKVRGLPWSTTVDEIMKFFGDCSISNGKNGVHMTTSRE-GRPSGEAY 60
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELF 149
V+ T ED +A +DR +M HRYIE+F
Sbjct: 61 VEMDTPEDIEKACKRDRDHMGHRYIEVF 88
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 16/122 (13%)
Query: 60 FAGPRPGGRWVNESSGPSRH------TVHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SG + V +RGLPF ++ ++A FF ++P + +
Sbjct: 88 FKAKRGEMEWVVKRSGLNLENAMDDGCVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPT 147
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQH-------RYIELFLNSSSPRGGVGGSG 163
+ GR +GEA V F + A +A+ K + + H LF+ SP +
Sbjct: 148 DYTGRSTGEAYVQFVNKDVAERALQKHKEKIGHSNDNNKDDDDNLFIADVSPCASLTRVS 207
Query: 164 SI 165
SI
Sbjct: 208 SI 209
>gi|91094511|ref|XP_971832.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
(hnRNP H) [Tribolium castaneum]
gi|270000730|gb|EEZ97177.1| hypothetical protein TcasGA2_TC004364 [Tribolium castaneum]
Length = 379
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 95/174 (54%), Gaps = 37/174 (21%)
Query: 10 RPAPYDRNDRFGGA---------------------NRFGGGSGPGPIRGGPPRGGFRGGF 48
RP+PYDR DRFG + N + S G RGG R +
Sbjct: 213 RPSPYDRGDRFGSSSSNSRFQSRSSRNFKGVNSDYNNYEKSSSTWS-NGSDSRGG-RSPY 270
Query: 49 NNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVD 108
D W++ N++ + H VHMRGLPF+A D+ DFF+P+VP +V
Sbjct: 271 EIDSWSETN-------------NQTGDRTMHCVHMRGLPFKATAADITDFFKPIVPTNVK 317
Query: 109 IHYE-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGG 161
+ + NGR SGEADV+FA+HEDAM+AMSKD+ +MQHRYIELFLNS+ G G
Sbjct: 318 LLQDHNGRASGEADVEFASHEDAMRAMSKDKGHMQHRYIELFLNSAGADNGNSG 371
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 69 WVNESSGPSRHT-----VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGEA 120
WV + SGP+ V +RGLPF ++ ++A FF +VP + + + +GR SGEA
Sbjct: 94 WVIKRSGPTYGVNDDGCVRLRGLPFGCSKEEIAQFFTGLEIVPNGITLLTDYSGRSSGEA 153
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGG 161
V F E A +A+ K R + HRYIE+F +S S V G
Sbjct: 154 YVQFVNKEVAEKALLKHREKIGHRYIEIFRSSLSEVNSVLG 194
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 79 HTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYEN---GRPSGEADVDFATHEDAMQA 133
+ V +RGLP+ A D+ FF+ V + IH + GRPSGEA V+F + +D A
Sbjct: 10 YIVKLRGLPWSATTEDILKFFKNCKVFNGKLGIHMTSSREGRPSGEAFVEFESEDDLNSA 69
Query: 134 MSKDRTNMQHRYIELF-LNSSSPRGGVGGSGSIGGFGGSGGGRLGGF 179
+ KDR ++ RYIE+F +N + + SG G G RL G
Sbjct: 70 LRKDREHIGSRYIEVFKVNKAEMDWVIKRSGPTYGVNDDGCVRLRGL 116
>gi|321466664|gb|EFX77658.1| hypothetical protein DAPPUDRAFT_198258 [Daphnia pulex]
Length = 397
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 101/164 (61%), Gaps = 32/164 (19%)
Query: 11 PAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGG-----FRGGFNND-------------- 51
P+PYDRN +RFGGG GPG +R G G + G F +
Sbjct: 229 PSPYDRN-----VDRFGGG-GPGQMRHGGGGGHMRRRGYYGNFTEEPYMRGGDWGNGGGP 282
Query: 52 -RWNDRPGGFAGPRP-GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI 109
R+ ++ F PR + +E SG H +HMRGLPFRA+E D+A+FF P+ PV + I
Sbjct: 283 PRYMEQ--NFERPRTLKTLYGDEGSG---HRIHMRGLPFRASEDDIAEFFHPLHPVAIHI 337
Query: 110 HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
YE GR SGEADV+FATHEDA++AMS+D+ NMQHRYIELFLNS+
Sbjct: 338 GYEQGRASGEADVEFATHEDAVRAMSRDKCNMQHRYIELFLNST 381
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 12/107 (11%)
Query: 60 FAGPRPGGRWVNESSGPSRHT---------VHMRGLPFRANERDVADFFR--PVVPVHVD 108
F R W+ + SGP V +RGLPF ++ ++A FF +VP +
Sbjct: 82 FRSKRSEMEWMVKRSGPPNAAAPSSDDDCFVRLRGLPFGCSKEEIAQFFTGLEIVPNGIT 141
Query: 109 IHYE-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+ + +GR +GEA + FAT A +A+ K + + HRYIE+F +S S
Sbjct: 142 LPTDYSGRSTGEAYIQFATSALAERALEKHKEKIGHRYIEIFRSSLS 188
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRP--VVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + D+ FF +V IH GRP+GE ++ ++ ED +A+
Sbjct: 8 VVRLRGLPWAVTDDDILKFFEDSNIVGGAAGIHMTYTREGRPTGEGYLELSSEEDVERAL 67
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+K ++ RYIE+F + S
Sbjct: 68 TKHNEHLGPRYIEVFRSKRS 87
>gi|156550801|ref|XP_001600558.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Nasonia
vitripennis]
Length = 563
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 76/113 (67%), Gaps = 20/113 (17%)
Query: 42 GGFRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRP 101
G +RGG ND WN GG H VHMRGLPFRA E+D+ADFFRP
Sbjct: 278 GNYRGG--NDNWNCNNGG-----------------GMHCVHMRGLPFRATEQDIADFFRP 318
Query: 102 VVPVHVDIHYENG-RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
+ P+ + I ENG R SGEADV+FA+HE+A++AMSKD+++M HRYIELFLNS
Sbjct: 319 LSPISIRIILENGGRASGEADVEFASHEEAVKAMSKDKSHMSHRYIELFLNSQ 371
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH--VDIHYE---NGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ ++ FF H IH GRPSGEA ++ + ED +A
Sbjct: 14 VVKVRGLPWSTTVDEIMKFFGDCSITHGKAGIHMTMSREGRPSGEAYIEMDSEEDIEKAC 73
Query: 135 SKDRTNMQHRYIELF 149
+DR +M HRYIE+F
Sbjct: 74 KRDRDHMGHRYIEVF 88
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 60 FAGPRPGGRWVNESSGPSRH------TVHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + S + V +RGLPF ++ ++A FF ++P + +
Sbjct: 88 FKAKRGEMEWVIKRSCLNLENVMDDGCVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPT 147
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS-SSPRGGVGGS---GSIG 166
+ GR +GEA V F + A +A+ K + + HRYIE+F +S S R +G G +G
Sbjct: 148 DYTGRSTGEAYVQFVNKDVAERALQKHKEKIGHRYIEIFRSSLSEVRASIGPKMRGGPMG 207
Query: 167 GF 168
GF
Sbjct: 208 GF 209
>gi|120538378|gb|AAI29088.1| Hnrph1 protein [Rattus norvegicus]
Length = 429
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 106/188 (56%), Gaps = 22/188 (11%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGG 170
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ GG GS +GG G
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGGAYGSQMLGGMGL 382
Query: 171 SGGGRLGG 178
S GG
Sbjct: 383 SNQSSYGG 390
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|397477061|ref|XP_003809903.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Pan paniscus]
gi|426351280|ref|XP_004043181.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Gorilla
gorilla gorilla]
Length = 452
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 106/188 (56%), Gaps = 22/188 (11%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGG 170
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ GG GS +GG G
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGGAYGSQMMGGMGL 382
Query: 171 SGGGRLGG 178
S GG
Sbjct: 383 SNQSSYGG 390
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|441595654|ref|XP_003279600.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 1
[Nomascus leucogenys]
Length = 452
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 106/188 (56%), Gaps = 22/188 (11%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGG 170
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ GG GS +GG G
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGGAYGSQMMGGMGL 382
Query: 171 SGGGRLGG 178
S GG
Sbjct: 383 SNQSSYGG 390
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|417409033|gb|JAA51043.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 251
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 106/188 (56%), Gaps = 22/188 (11%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 28 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 87
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 88 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 144
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGG 170
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ GG GS +GG G
Sbjct: 145 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGGAYGSQMMGGMGL 204
Query: 171 SGGGRLGG 178
S GG
Sbjct: 205 SNQSSYGG 212
>gi|357613158|gb|EHJ68351.1| putative Heterogeneous nuclear ribonucleoprotein H [Danaus
plexippus]
Length = 343
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 89/152 (58%), Gaps = 32/152 (21%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGGFNNDRWNDRPGGFAGPRPGGRW 69
RP PYDRNDR G G RGG G + GGR
Sbjct: 214 RPTPYDRNDRLSGRFGGRGRGSFA-------RGGSGGSYTG--------------RGGRL 252
Query: 70 VNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHE 128
S H VHMRGLPF+A +D+A FF+P+ P++++IHY+N GRPSGEADV+F HE
Sbjct: 253 ------GSSHCVHMRGLPFKATPQDIAYFFKPIRPLNINIHYDNSGRPSGEADVEFECHE 306
Query: 129 DAMQAMSKDRTNMQHRYIELFLNSS----SPR 156
DAM+AM +D+ NM+HRYIELF+NSS SPR
Sbjct: 307 DAMRAMRRDKNNMEHRYIELFMNSSPTFKSPR 338
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSK 136
V +RGLPF ++ ++ FF + V +H GR SGEA V F + A A+ +
Sbjct: 117 IVKLRGLPFGCSKEEIIQFFNGLSVVQDGVHLLSDHTGRASGEAFVYFVDKQSARDALDR 176
Query: 137 DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSG 172
D + HRYIE+FL+S+ G GGF G
Sbjct: 177 DMEKIGHRYIEVFLSSADKVRAYGARLEGGGFKSRG 212
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVD--IHYEN---GRPSGEADVDFATHE 128
SG + + +RGLPF DV F V ++ +H GRPSGE V+ + +
Sbjct: 4 SGDGSYIIKLRGLPFSTTAEDVLTFLSGVNVINDKEGVHLTEVRPGRPSGECFVEVQSQD 63
Query: 129 DAMQAMSKDRTNMQHRYIELF 149
D A+ KD+ N+ RYIE+F
Sbjct: 64 DVTHALKKDKENIGRRYIEVF 84
>gi|395521342|ref|XP_003764777.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Sarcophilus harrisii]
Length = 465
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 116/219 (52%), Gaps = 26/219 (11%)
Query: 10 RPAPYDR--NDRFGGANRFGGGSGPGPIRGGPPR---GGFRG--GFNNDRWNDR-PGGF- 60
RP PYDR R+ G+ G G+G +R G GG+ G++ND R P F
Sbjct: 205 RPGPYDRPPTGRYYGS--LGRGAGLEGMRYGAHEIMYGGYEDYVGYSNDYHFGRDPRYFL 262
Query: 61 --AGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPS 117
+G G W S P+ H VHMRGLP++A E+D+ DFF P+ PV I +GR +
Sbjct: 263 AVSGDSYGSGWSTFQS-PAGHFVHMRGLPYKATEKDIYDFFSPLKPVGAYIEVGADGRVT 321
Query: 118 GEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSP----------RGGVGGSGSIGG 167
GEADV+FATHEDA+ AMSKD+ NMQHRYIELFLNS + GG+G S ++ G
Sbjct: 322 GEADVEFATHEDAVAAMSKDKANMQHRYIELFLNSVAAADSGVYDPLMMGGMGLS-NLPG 380
Query: 168 FGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRS 206
+G G L G +Q EN+ S +
Sbjct: 381 YGSPSGQELNEASGGAYDGQISMSKSDQVLQENSNFSTT 419
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 81 VHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLPF N+ D+ +FF + + + VD G+ SGEA V FA+ E A +A+
Sbjct: 112 VRLRGLPFNCNKEDIVEFFSGLEIMPNGIMLQVDF---RGKNSGEAFVQFASQEIAEKAL 168
Query: 135 SKDRTNMQHRYIELFLNSSS 154
K + M HRYIE+F +S +
Sbjct: 169 KKHKEKMGHRYIEIFKSSQA 188
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFF------RPVVPVHVDIHYENGRPSGEADVDFATHEDAM 131
R V +RGLP+ + DV +FF V +H ++ GRPSGEA V+ + E+
Sbjct: 9 RFVVKVRGLPWSCSASDVQNFFSGCRIRNGVAGIHF-MYTREGRPSGEAFVELESEEEIE 67
Query: 132 QAMSKDRTNMQHRYIELF 149
A+ K + M HRY+E+F
Sbjct: 68 LALKKHKETMAHRYVEVF 85
>gi|197246805|gb|AAI68807.1| hnrnph3 protein [Xenopus (Silurana) tropicalis]
Length = 413
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 92/145 (63%), Gaps = 8/145 (5%)
Query: 42 GGFRG-GFNNDRWNDR---PGGFAGPRPGGRWVNESSG-PSRHTVHMRGLPFRANERDVA 96
GGF GF D ++DR G A GG + ++G S H VHMRGLPFRA E D+A
Sbjct: 242 GGFNNYGFGTDGFDDRLRESRGMAQAYGGG--ADGTTGFHSGHFVHMRGLPFRATESDIA 299
Query: 97 DFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSP 155
+FF P+ P+ V I +GR +GEADV+FATHEDA+ AMSKD+ NMQHRYIELFLNS++
Sbjct: 300 NFFSPLTPIRVHIDVGADGRATGEADVEFATHEDAVAAMSKDKNNMQHRYIELFLNSTAG 359
Query: 156 RGGVGGSGSIGGFGGSGGGRLGGFG 180
G G S G G+G G + G
Sbjct: 360 GGAGMGCYSRDGLDGTGYGAVSRMG 384
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH--VDIHY---ENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V +FF + IH+ + GRPSGEA + T ED +A+
Sbjct: 6 IVRVRGLPWSCTKEEVLEFFSECSIIEGVSGIHFTTSKEGRPSGEAFIILDTEEDLKKAL 65
Query: 135 SKDRTNMQHRYIELFLNSSSPRGGVGGSGSIG 166
KDR M HRYIE+F ++++ V S G
Sbjct: 66 EKDRKYMGHRYIEVFKSNNTEMEWVLKHNSTG 97
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
TV +RGLPF ++ ++ FF +VP + + + Y+ GR +GEA V FA+ E A A+
Sbjct: 106 TVRLRGLPFGCSKEEIVQFFSGLRIVPNGITLTVDYQ-GRSTGEAFVQFASKEIAENALG 164
Query: 136 KDRTNMQHRYIELFLNSSS 154
K + + HRYIE+F +S S
Sbjct: 165 KHKERIGHRYIEIFKSSRS 183
>gi|395736587|ref|XP_003780726.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H [Pongo abelii]
Length = 430
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 73/102 (71%), Gaps = 2/102 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ PV V I +GR +GEADV+FATHEDA+ AMSKD
Sbjct: 290 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 349
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGG 178
+ NMQHRY+ELFLNS++ GG GS +GG G S GG
Sbjct: 350 KANMQHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGG 391
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 96 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 155
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 156 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 188
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 13 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 72
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E F
Sbjct: 73 KKDRETMGHRYVEGF 87
>gi|194389894|dbj|BAG60463.1| unnamed protein product [Homo sapiens]
Length = 159
Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 77/115 (66%), Gaps = 5/115 (4%)
Query: 66 GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDF 124
GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I +GR +GEADV+F
Sbjct: 9 GGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 65
Query: 125 ATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGG 178
ATHEDA+ AMSKD+ NMQHRY+ELFLNS++ GG S +GG G S GG
Sbjct: 66 ATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGGAYSSQMLGGMGLSNQSSYGG 120
>gi|188528963|ref|NP_001120907.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Xenopus
(Silurana) tropicalis]
gi|183986477|gb|AAI66302.1| hnrnph3 protein [Xenopus (Silurana) tropicalis]
Length = 416
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 89/138 (64%), Gaps = 8/138 (5%)
Query: 42 GGFRG-GFNNDRWNDR---PGGFAGPRPGGRWVNESSG-PSRHTVHMRGLPFRANERDVA 96
GGF GF D ++DR G A GG + ++G S H VHMRGLPFRA E D+A
Sbjct: 242 GGFNNYGFGTDGFDDRLRESRGMAQAYGGG--ADGTTGFHSGHFVHMRGLPFRATESDIA 299
Query: 97 DFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSP 155
+FF P+ P+ V I +GR +GEADV+FATHEDA+ AMSKD+ NMQHRYIELFLNS++
Sbjct: 300 NFFSPLTPIRVHIDVGADGRATGEADVEFATHEDAVAAMSKDKNNMQHRYIELFLNSTAG 359
Query: 156 RGGVGGSGSIGGFGGSGG 173
G G S G G S G
Sbjct: 360 GGAGMGCYSRDGLGMSDG 377
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH--VDIHY---ENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V +FF + IH+ + GRPSGEA + T ED +A+
Sbjct: 6 IVRVRGLPWSCTKEEVLEFFSECSIIEGVSGIHFTTSKEGRPSGEAFIILDTEEDLKKAL 65
Query: 135 SKDRTNMQHRYIELFLNSSSPRGGVGGSGSIG 166
KDR M HRYIE+F ++++ V S G
Sbjct: 66 EKDRKYMGHRYIEVFKSNNTEMEWVLKHNSTG 97
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
TV +RGLPF ++ ++ FF +VP + + + Y+ GR +GEA V FA+ E A A+
Sbjct: 106 TVRLRGLPFGCSKEEIVQFFSGLRIVPNGITLTVDYQ-GRSTGEAFVQFASKEIAENALG 164
Query: 136 KDRTNMQHRYIELFLNSSS 154
K + + HRYIE+F +S S
Sbjct: 165 KHKERIGHRYIEIFKSSRS 183
>gi|119574194|gb|EAW53809.1| heterogeneous nuclear ribonucleoprotein H1 (H), isoform CRA_b [Homo
sapiens]
Length = 393
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 103/179 (57%), Gaps = 22/179 (12%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFG 169
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ GG GS +GG G
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGGAYGSQMLGGMG 381
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH-----VDIHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|241339179|ref|XP_002408443.1| splicing factor hnRNP-F, putative [Ixodes scapularis]
gi|215497357|gb|EEC06851.1| splicing factor hnRNP-F, putative [Ixodes scapularis]
Length = 293
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLPFRA ERD+ +FF+P+ P++V + YE+ GRPSGE DV+FATHE+A++AMSKD
Sbjct: 139 HFVHMRGLPFRATERDIFEFFQPMNPMNVHLIYEDSGRPSGECDVEFATHEEAVKAMSKD 198
Query: 138 RTNMQHRYIELFLNSS 153
+ +MQHRYIELFLNS+
Sbjct: 199 KAHMQHRYIELFLNST 214
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 105 VHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
VH+ + E GRPSGEA ++ + +D + + ++ HRYIE+F + S V
Sbjct: 26 VHMTLSRE-GRPSGEAYIELESEQDVEVGLQRHNEHIGHRYIEVFKSKRSEMDWV 79
>gi|410989009|ref|XP_004000762.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Felis catus]
Length = 432
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 76/109 (69%), Gaps = 8/109 (7%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSS 186
+ NMQHRY+ELFLNS++ G G SG G G +GG G S+ SS
Sbjct: 349 KANMQHRYVELFLNSTA--GTTGASG-----GAYGSQMMGGMGLSNQSS 390
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|402910822|ref|XP_003918047.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Papio
anubis]
Length = 386
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 76/109 (69%), Gaps = 8/109 (7%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 243 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 302
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSS 186
+ NMQHRY+ELFLNS++ G G SG G G +GG G S+ SS
Sbjct: 303 KANMQHRYVELFLNSTA--GTTGASG-----GAYGSQMMGGMGLSNQSS 344
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 84 RGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKDRTN 140
+GLPF ++ ++ FF +VP + + + GR +GEA V FA+ E A +A+ K +
Sbjct: 70 QGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKER 129
Query: 141 MQHRYIELFLNS 152
+ HRYIE+F +S
Sbjct: 130 IGHRYIEIFKSS 141
>gi|301788126|ref|XP_002929479.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Ailuropoda melanoleuca]
gi|344306831|ref|XP_003422087.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Loxodonta africana]
Length = 432
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 76/109 (69%), Gaps = 8/109 (7%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSS 186
+ NMQHRY+ELFLNS++ G G SG G G +GG G S+ SS
Sbjct: 349 KANMQHRYVELFLNSTA--GTTGASG-----GAYGSQMMGGMGLSNQSS 390
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|148233462|ref|NP_001087973.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Xenopus laevis]
gi|52138903|gb|AAH82630.1| LOC494658 protein [Xenopus laevis]
Length = 342
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 73/103 (70%), Gaps = 1/103 (0%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLPFRA+E D+A+FF P+ P+ V I +GR +GEADV+FATHEDA+ AMSKD
Sbjct: 211 HFVHMRGLPFRASESDIANFFSPLTPIRVHIDVGADGRATGEADVEFATHEDAVAAMSKD 270
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFG 180
+ NMQHRYIELFLNS++ G G G G+G G + G
Sbjct: 271 KNNMQHRYIELFLNSTAGGGAGMGCYGRDGLDGTGYGAVSRMG 313
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
TV +RGLPF ++ ++ FF +VP + + + Y+ GR +GEA V FA+ E A A+
Sbjct: 35 TVRLRGLPFGCSKEEIVQFFSGLRIVPNGITLTVDYQ-GRSTGEAFVQFASKEIAENALG 93
Query: 136 KDRTNMQHRYIELFLNS 152
K + + HRYIE+F +S
Sbjct: 94 KHKERIGHRYIEIFKSS 110
>gi|405952153|gb|EKC19997.1| Heterogeneous nuclear ribonucleoprotein H [Crassostrea gigas]
Length = 544
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 70/93 (75%), Gaps = 5/93 (5%)
Query: 62 GPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEA 120
G PG +V+ + H+VHMRGLPF+A E D+ADFF P+ PV V+ + NGRP+GEA
Sbjct: 376 GATPGSHYVSRTG----HSVHMRGLPFQALESDIADFFSPLTPVRVEFEFAPNGRPTGEA 431
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
+VDF TH DA++AMS+ + NMQHRYIELFLNS+
Sbjct: 432 NVDFKTHSDAVEAMSRHKKNMQHRYIELFLNST 464
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 69 WVNESSGP------SRHTVHMRGLPFRANERDVADFFR--PVVPVHVDI-HYENGRPSGE 119
WV + +GP V +RGLPF ++ ++A FF +VP + + GR +GE
Sbjct: 127 WVIKRAGPGQMPGSCEAVVRLRGLPFGCSKEEIAQFFTGLEIVPNGIMLPEDRQGRSTGE 186
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLN-SSSPRGGVGGSGSIG-GFGGSGGG 174
A V FA+ E A +A+SK + + HRYIE+F + + +G + I GGSGGG
Sbjct: 187 AYVQFASQEIAEKALSKHKERIGHRYIEIFKSGMQEAQNAMGQTPRIRPLMGGSGGG 243
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD----IHYE---NGRPSGEADVDFATHEDAMQ 132
V +RGLP+ A E +V FF V + VD +H+ GRPSGE V+ ++ +
Sbjct: 43 VVRLRGLPWSATESEVVKFFGEDVEI-VDGEQGVHFTFSREGRPSGECFVELIDEDNVQR 101
Query: 133 AMSKDRTNMQHRYIELFLNSSS 154
+ +M +RYIE+F + S
Sbjct: 102 GLKCHNKHMGNRYIEVFRSKKS 123
>gi|45383173|ref|NP_989827.1| heterogeneous nuclear ribonucleoprotein H [Gallus gallus]
gi|33521618|gb|AAQ20009.1| heterogeneous nuclear ribonucleoprotein H1-like protein [Gallus
gallus]
Length = 519
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 93/160 (58%), Gaps = 19/160 (11%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDR----WN 54
RP PYDR G N G GSG +R G GG+ G F +DR W
Sbjct: 256 RPGPYDRPGLTRGYNSLGRGSGLERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGREWT 315
Query: 55 DRPGGFAGPRPG-GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-E 112
G + R G G +S+ + H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 316 LFSAGMSDHRYGDGTSTFQST--TGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGP 373
Query: 113 NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS
Sbjct: 374 DGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 413
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 145 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 204
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 205 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 237
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQA 133
+ V +RGLP+ + +V FF ++ I+ GRPSGEA + + ED A
Sbjct: 61 YVVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLA 120
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR M HRY+E+F
Sbjct: 121 LKKDRETMGHRYVEVF 136
>gi|60098931|emb|CAH65296.1| hypothetical protein RCJMB04_15n19 [Gallus gallus]
Length = 499
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 93/160 (58%), Gaps = 19/160 (11%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDR----WN 54
RP PYDR G N G GSG +R G GG+ G F +DR W
Sbjct: 236 RPGPYDRPGLTRGYNSLGRGSGLERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGREWT 295
Query: 55 DRPGGFAGPRPG-GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-E 112
G + R G G +S+ + H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 296 LFSAGMSDHRYGDGTSTFQST--TGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGP 353
Query: 113 NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS
Sbjct: 354 DGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 393
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 125 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 184
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 185 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 217
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQA 133
+ V +RGLP+ + +V FF ++ I+ GRPSGEA + + ED A
Sbjct: 41 YVVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLA 100
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR M HRY+ +F
Sbjct: 101 LKKDRETMGHRYVVVF 116
>gi|354486518|ref|XP_003505427.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Cricetulus
griseus]
Length = 447
Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 181 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 240
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 241 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 297
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 298 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 355
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 356 LNSTAGASGGAYGSQMMGGMGLSNQSS 382
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 70 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 129
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 130 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 162
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 109 IHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
I+ GRPSGEA V+ + ++ A+ KDR M HRY+E+F
Sbjct: 21 IYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVF 61
>gi|194219511|ref|XP_001497574.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Equus
caballus]
Length = 456
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 213 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 272
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 273 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 329
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 330 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 387
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 388 LNSTAGASGGAYGSQMMGGMGLSNQSS 414
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 102 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 161
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 162 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 194
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 109 IHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
I+ GRPSGEA V+ + ++ A+ KDR M HRY+E+F
Sbjct: 53 IYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVF 93
>gi|148701752|gb|EDL33699.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_b [Mus
musculus]
Length = 485
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 219 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 278
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 279 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 335
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 336 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 393
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 394 LNSTAGASGGAYGSQMMGGMGLSNQSS 420
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 108 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 167
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 168 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 200
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 25 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 84
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 85 KKDRETMGHRYVEVF 99
>gi|395504896|ref|XP_003756782.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Sarcophilus
harrisii]
Length = 471
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 205 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 264
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 265 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 321
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 322 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 379
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 380 LNSTAGASGGAYGSQMMGGMGLSNQSS 406
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSR------HTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 94 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 153
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 154 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 186
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 109 IHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
I+ GRPSGEA V+ + ++ A+ KDR M HRY+E+F
Sbjct: 45 IYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVF 85
>gi|126290596|ref|XP_001369385.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Monodelphis
domestica]
Length = 449
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 380
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 381 LNSTAGASGGAYGSQMMGGMGLSNQSS 407
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSECKIQNGASGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|395853398|ref|XP_003799198.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 1
[Otolemur garnettii]
gi|395853400|ref|XP_003799199.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2
[Otolemur garnettii]
gi|395853402|ref|XP_003799200.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 3
[Otolemur garnettii]
Length = 449
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 380
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 381 LNSTAGASGGAYGSQMMGGMGLSNQSS 407
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSAEEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|48145673|emb|CAG33059.1| HNRPH1 [Homo sapiens]
Length = 449
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 380
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 381 LNSTAGASGGAYGSQMMGGMGLSNQSS 407
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|355694919|gb|AER99830.1| heteroproteinous nuclear ribonucleoprotein F [Mustela putorius
furo]
Length = 342
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 103/198 (52%), Gaps = 29/198 (14%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-N 54
RP PYDR G A R+ G +G +R G G+ G GF D +
Sbjct: 150 RPGPYDRP---GTARRYIGIVKQAGLERMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGR 206
Query: 55 DRPGGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI 109
D +G G V ++G H VHMRGLP++A E D+ +FF P+ PV V I
Sbjct: 207 DLSYCLSGMYDHRYGDGEFTVQSTTG---HCVHMRGLPYKATENDIYNFFSPLNPVRVHI 263
Query: 110 HY-ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGF 168
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++ G G+ S
Sbjct: 264 EIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT--GASNGAYSSQMM 321
Query: 169 GGSGGGRLGGFGGSDPSS 186
G G + G D S
Sbjct: 322 QGMGVSAQSTYSGLDSQS 339
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 30 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 89
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 90 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 131
>gi|10946928|ref|NP_067485.1| heterogeneous nuclear ribonucleoprotein H [Mus musculus]
gi|46396669|sp|O35737.3|HNRH1_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein H;
Short=hnRNP H; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein H, N-terminally processed
gi|2253041|emb|CAA74583.1| heterogeneous nuclear ribonucleoprotein H [Mus musculus]
gi|33604202|gb|AAH56224.1| Heterogeneous nuclear ribonucleoprotein H1 [Mus musculus]
gi|37589940|gb|AAH42187.2| Heterogeneous nuclear ribonucleoprotein H1 [Mus musculus]
gi|74149585|dbj|BAE36421.1| unnamed protein product [Mus musculus]
gi|148701754|gb|EDL33701.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_d [Mus
musculus]
gi|149052456|gb|EDM04273.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_b [Rattus
norvegicus]
Length = 449
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 380
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 381 LNSTAGASGGAYGSQMMGGMGLSNQSS 407
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|5031753|ref|NP_005511.1| heterogeneous nuclear ribonucleoprotein H [Homo sapiens]
gi|300794637|ref|NP_001180163.1| heterogeneous nuclear ribonucleoprotein H [Bos taurus]
gi|381342476|ref|NP_001244222.1| heterogeneous nuclear ribonucleoprotein H [Homo sapiens]
gi|73970381|ref|XP_857122.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 19
[Canis lupus familiaris]
gi|109080078|ref|XP_001099955.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 7
[Macaca mulatta]
gi|114603795|ref|XP_001150460.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2 [Pan
troglodytes]
gi|291410134|ref|XP_002721348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H1-like
[Oryctolagus cuniculus]
gi|301771512|ref|XP_002921169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Ailuropoda melanoleuca]
gi|311249564|ref|XP_003123691.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Sus scrofa]
gi|348551747|ref|XP_003461691.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Cavia
porcellus]
gi|403307005|ref|XP_003944005.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 1
[Saimiri boliviensis boliviensis]
gi|403307007|ref|XP_003944006.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2
[Saimiri boliviensis boliviensis]
gi|410947937|ref|XP_003980698.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Felis catus]
gi|426228702|ref|XP_004008435.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Ovis aries]
gi|1710632|sp|P31943.4|HNRH1_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein H;
Short=hnRNP H; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein H, N-terminally processed
gi|347314|gb|AAA91346.1| hnRNP H [Homo sapiens]
gi|12655001|gb|AAH01348.1| HNRPH1 protein [Homo sapiens]
gi|119574192|gb|EAW53807.1| heterogeneous nuclear ribonucleoprotein H1 (H), isoform CRA_a [Homo
sapiens]
gi|119574193|gb|EAW53808.1| heterogeneous nuclear ribonucleoprotein H1 (H), isoform CRA_a [Homo
sapiens]
gi|193784895|dbj|BAG54048.1| unnamed protein product [Homo sapiens]
gi|296486243|tpg|DAA28356.1| TPA: heterogeneous nuclear ribonucleoprotein H1 (H) [Bos taurus]
Length = 449
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 380
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 381 LNSTAGASGGAYGSQMMGGMGLSNQSS 407
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|344265353|ref|XP_003404749.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Loxodonta
africana]
Length = 449
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 380
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 381 LNSTAGASGGAYGSQMMGGMGLSNQSS 407
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + +D A+
Sbjct: 12 VVKVRGLPWSCSAEEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDDVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|355691923|gb|EHH27108.1| hypothetical protein EGK_17225 [Macaca mulatta]
Length = 472
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 380
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 381 LNSTAGASGGAYGSQMMGGMGLSNQSS 407
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
+DR M HRY+E+F
Sbjct: 72 KEDRETMGHRYVEVF 86
>gi|402873628|ref|XP_003919688.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H [Papio anubis]
Length = 472
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 380
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 381 LNSTAGASGGAYGSQMMGGMGLSNQSS 407
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|67971142|dbj|BAE01913.1| unnamed protein product [Macaca fascicularis]
Length = 286
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 43 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 102
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 103 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 159
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 160 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 217
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 218 LNSTAGASGGAYGSQMMGGMGLSNQSS 244
>gi|390459519|ref|XP_002744505.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Callithrix
jacchus]
Length = 472
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 380
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 381 LNSTAGASGGAYGSQMMGGMGLSNQSS 407
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|440897190|gb|ELR48939.1| Heterogeneous nuclear ribonucleoprotein H [Bos grunniens mutus]
Length = 472
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 380
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 381 LNSTAGASGGAYGSQMMGGMGLSNQSS 407
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|351714509|gb|EHB17428.1| Heterogeneous nuclear ribonucleoprotein H, partial [Heterocephalus
glaber]
Length = 444
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 178 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 237
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 238 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 294
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 295 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 352
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 353 LNSTAGASGGAYGSQMMGGMGLSNQSS 379
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 67 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 126
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 127 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 159
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 109 IHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
I+ GRPSGEA V+ + ++ A+ KDR M HRY+E+F
Sbjct: 18 IYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVF 58
>gi|261859020|dbj|BAI46032.1| heterogeneous nuclear ribonucleoprotein H1 [synthetic construct]
Length = 472
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 380
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 381 LNSTAGASGGAYGSQMMGGMGLSNQSS 407
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|26353116|dbj|BAC40188.1| unnamed protein product [Mus musculus]
Length = 472
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 380
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 381 LNSTAGASGGAYGSQMMGGMGLSNQSS 407
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|441595657|ref|XP_004087258.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2
[Nomascus leucogenys]
Length = 472
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 380
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 381 LNSTAGASGGAYGSQMMGGMGLSNQSS 407
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|417409228|gb|JAA51131.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 271
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 28 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 87
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 88 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 144
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 145 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 202
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 203 LNSTAGASGGAYGSQMMGGMGLSNQSS 229
>gi|148886840|sp|Q8VHV7.2|HNRH1_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein H;
Short=hnRNP H; AltName: Full=Ratsg1; Contains: RecName:
Full=Heterogeneous nuclear ribonucleoprotein H,
N-terminally processed
Length = 449
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIETG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 380
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 381 LNSTAGASGGAYGSQMMGGMGLSNQSS 407
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF +E ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|18266700|ref|NP_543172.1| heterogeneous nuclear ribonucleoprotein H [Rattus norvegicus]
gi|18104446|gb|AAL59557.1| Ratsg1 [Rattus norvegicus]
Length = 372
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 129 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 188
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 189 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIETG 245
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 246 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 303
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 304 LNSTAGASGGAYGSQMMGGMGLSNQSS 330
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF +E ++ FF +VP + + + GR +GE
Sbjct: 18 WVLKHTGPNSPDTANDGFVRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 77
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 78 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 110
>gi|74222440|dbj|BAE38120.1| unnamed protein product [Mus musculus]
Length = 272
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 29 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 88
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 89 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 145
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 146 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 203
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 204 LNSTAGASGGAYGSQMMGGMGLSNQSS 230
>gi|343961567|dbj|BAK62373.1| heterogeneous nuclear ribonucleoprotein H [Pan troglodytes]
Length = 357
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 114 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 173
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 174 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 230
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 231 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 288
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 289 LNSTAGASGGAYGSQMMGGMGLSNQSS 315
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 3 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 62
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 63 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 95
>gi|281351805|gb|EFB27389.1| hypothetical protein PANDA_010030 [Ailuropoda melanoleuca]
Length = 472
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 380
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 381 LNSTAGASGGAYGSQMMGGMGLSNQSS 407
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSR------HTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|148701753|gb|EDL33700.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_c [Mus
musculus]
Length = 288
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 45 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 104
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 105 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 161
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 162 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 219
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 220 LNSTAGASGGAYGSQMMGGMGLSNQSS 246
>gi|449474971|ref|XP_002195792.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Taeniopygia
guttata]
Length = 419
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 91/158 (57%), Gaps = 15/158 (9%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRWNDRPG 58
RP PYDR G N G GS +R G GG+ G F +DR+
Sbjct: 187 RPGPYDRPGLTRGYNSLGRGSSLERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGREWT 246
Query: 59 GFAGPRPGGRWVNESS---GPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENG 114
F+ R+ + SS + H VHMRGLP+RA E D+ +FF P+ PV V I +G
Sbjct: 247 LFSAGMSDHRYGDGSSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG 306
Query: 115 RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
R +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS
Sbjct: 307 RVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 344
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 76 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 135
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 136 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 168
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 109 IHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
I+ GRPSGEA + + ED A+ KDR M HRY+E+F
Sbjct: 27 IYTREGRPSGEAFAELESEEDVKLALKKDRETMGHRYVEVF 67
>gi|395861473|ref|XP_003803009.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Otolemur
garnettii]
Length = 432
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 75/109 (68%), Gaps = 8/109 (7%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSS 186
+ NMQHRY+ELFLNS++ G G SG G +GG G S+ SS
Sbjct: 349 KANMQHRYVELFLNSTA--GTTGASG-----GAYDSQMMGGMGLSNQSS 390
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|432879057|ref|XP_004073431.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Oryzias
latipes]
Length = 413
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 96/167 (57%), Gaps = 17/167 (10%)
Query: 7 GFGRPAPYDRNDRFGGANRFGGGSGPGPIR--GGPPRGGFRGGFNNDRWNDRPGGFAGPR 64
G RP+PYDR G N G G+ +R G GG GG ++ R+ D F
Sbjct: 198 GMQRPSPYDRPSGGRGYNMMGRGASYDRMRRGGYGGGGGGGGGVSDGRYGDSGSSF---- 253
Query: 65 PGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVD 123
+ H VHMRGLP+RA E D+ +FF P+ PV V I +GR +GEADV+
Sbjct: 254 ---------QSTTGHCVHMRGLPYRATETDIYNFFSPLNPVRVHIEIGPDGRVTGEADVE 304
Query: 124 FATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFG 169
FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GS +GG G
Sbjct: 305 FATHEDAVAAMSKDKANMQHRYVELFLNSTAGGSNGAYGSQMMGGMG 351
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQA 133
+ V +RGLP+ + +V FF ++ IH+ GRPSGEA V+ T ED A
Sbjct: 6 YVVRIRGLPWSCSVDEVQRFFSGCKILNNGSGIHFTYTREGRPSGEAFVEMETEEDLKVA 65
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR M HRY+E+F
Sbjct: 66 VKKDRETMGHRYVEVF 81
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 15/93 (16%)
Query: 69 WVNESSGPS------RHTVHMRGLPFRANERDVADFFR--PVVP----VHVDIHYENGRP 116
WV + +GP+ V +RGLPF ++ ++ FF +VP + VDI GR
Sbjct: 90 WVMKHTGPNCPETAGDGLVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQ---GRS 146
Query: 117 SGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+GEA V FA+ + A +A+ K + + HRYIE+F
Sbjct: 147 TGEAFVQFASQDIAEKALKKHKERIGHRYIEIF 179
>gi|395501374|ref|XP_003755070.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 [Sarcophilus
harrisii]
Length = 342
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 79/119 (66%), Gaps = 16/119 (13%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 196 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDALAAMSK 254
Query: 137 DRTNMQHRYIELFLNSSS---------PRGGV---GGSGSIGGFGGSGGGRLGGFGGSD 183
D+ NMQHRYIELFLNS + R G+ GG GS+G G G GG+G D
Sbjct: 255 DKNNMQHRYIELFLNSVAGGGSGMGGYGRDGMDNQGGYGSVGRM-GMGSSYSGGYGTPD 312
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 9/98 (9%)
Query: 69 WVNESSGP----SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEA 120
WV + +GP S TV +RGLPF ++ ++ FF +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDAASDGTVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQ-GRSTGEA 61
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 FVQFASKEIAENALGKHKERIGHRYIEIFKSSRSEIKG 99
>gi|148701751|gb|EDL33698.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_a [Mus
musculus]
Length = 311
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 45 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 104
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 105 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 161
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 162 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 219
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 220 LNSTAGASGGAYGSQMMGGMGLSNQSS 246
>gi|344246789|gb|EGW02893.1| Heterogeneous nuclear ribonucleoprotein H [Cricetulus griseus]
Length = 415
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 103/185 (55%), Gaps = 22/185 (11%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 179 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 238
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 239 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 295
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G G + +GG
Sbjct: 296 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASG-GAYANQSSYGGP 354
Query: 172 GGGRL 176
+L
Sbjct: 355 ASQQL 359
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 68 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 127
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 128 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 160
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 109 IHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
I+ GRPSGEA V+ + ++ A+ KDR M HRY+E+F
Sbjct: 19 IYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVF 59
>gi|431914602|gb|ELK15790.1| Heterogeneous nuclear ribonucleoprotein F [Pteropus alecto]
Length = 414
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 104/200 (52%), Gaps = 26/200 (13%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-- 53
RP PYDR G A R+ G +G +R G G+ G GF D +
Sbjct: 206 RPGPYDRP---GTARRYIGIVKQAGLERMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGR 262
Query: 54 --NDRPGGFAGPRPG-GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIH 110
+ G R G G + +S+ + H VHMRGLP++A E D+ +FF P+ PV V I
Sbjct: 263 DLSYCLSGMYDHRYGDGEFTVQST--TGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIE 320
Query: 111 Y-ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGF 168
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++ G S + G
Sbjct: 321 IGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQMMQGM 380
Query: 169 GGSGGGRLGGFGGSDPSSPF 188
G S G S +
Sbjct: 381 GVSAQSTYSGLESQSVSGCY 400
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F + +H I+ GR SGEA V+ + +D A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSGCIIHDGATGIHF-IYTREGRQSGEAFVELESEDDVKMA 70
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
>gi|149690626|ref|XP_001490069.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 1
[Equus caballus]
gi|338717722|ref|XP_003363688.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Equus
caballus]
Length = 414
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 104/200 (52%), Gaps = 26/200 (13%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-- 53
RP PYDR G A R+ G +G +R G G+ G GF D +
Sbjct: 206 RPGPYDRP---GTARRYIGIVKQAGLERMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGR 262
Query: 54 --NDRPGGFAGPRPG-GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIH 110
+ G R G G + +S+ + H VHMRGLP++A E D+ +FF P+ PV V I
Sbjct: 263 DLSYCLSGMYDHRYGDGEFTVQST--TGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIE 320
Query: 111 Y-ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGF 168
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++ G S + G
Sbjct: 321 IGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQMMQGM 380
Query: 169 GGSGGGRLGGFGGSDPSSPF 188
G S G S +
Sbjct: 381 GVSAQSTYSGLESQSVSGCY 400
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F VH I+ GR SGEA ++ + +D A
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGAAGVHF-IYTREGRQSGEAFIELESEDDVKMA 70
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
>gi|348516774|ref|XP_003445912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Oreochromis niloticus]
Length = 406
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 70/95 (73%), Gaps = 3/95 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ PV V I +GR +GEADV+FATHEDA+ AMSKD
Sbjct: 253 HCVHMRGLPYRATETDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 312
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSG 172
+ NMQHRY+ELFLNS++ GG G+ S GG G
Sbjct: 313 KANMQHRYVELFLNSTA--GGSNGAYSSQMMGGMG 345
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVH--VDIHYE---NGRPSGEADVDFATHEDAMQA 133
+ V +RGLP+ + +V FF ++ IH+ GRPSGEA V+F T ED A
Sbjct: 6 YVVRIRGLPWSCSVDEVQRFFSDCKILNNGSGIHFTYTREGRPSGEAFVEFETEEDLKIA 65
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR M HRY+E+F
Sbjct: 66 VKKDRETMGHRYVEVF 81
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 15/96 (15%)
Query: 69 WVNESSGPS------RHTVHMRGLPFRANERDVADFFR--PVVP----VHVDIHYENGRP 116
WV + +GP+ V +RGLPF ++ ++ FF +VP + VDI GR
Sbjct: 90 WVMKHTGPNCPETAGDGLVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQ---GRS 146
Query: 117 SGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+GEA V FA+ + A +A+ K + + HRYIE+F +S
Sbjct: 147 TGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSS 182
>gi|20073357|gb|AAH27003.1| Hnrpf protein [Mus musculus]
Length = 338
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 91/164 (55%), Gaps = 23/164 (14%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-- 53
RP PYDR G A R+ G +G +R G G+ G GF D +
Sbjct: 129 RPGPYDRP---GTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGR 185
Query: 54 --NDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY 111
+ G R G S + H VHMRGLP++A E D+ +FF P+ PV V I
Sbjct: 186 DLSYCLSGMCDHRYGDSEFTVQS-TTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEI 244
Query: 112 -ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++
Sbjct: 245 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT 288
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 9 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 68
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 69 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 110
>gi|335775266|gb|AEH58514.1| heterogeneous nuclear ribonucleoprotein-like protein [Equus
caballus]
Length = 337
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 102/191 (53%), Gaps = 26/191 (13%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-- 53
RP PYDR G A R+ G +G +R G G+ G GF D +
Sbjct: 129 RPGPYDRP---GTARRYIGIVKQAGLERMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGR 185
Query: 54 --NDRPGGFAGPRPG-GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIH 110
+ G R G G + +S+ + H VHMRGLP++A E D+ +FF P+ PV V I
Sbjct: 186 DLSYCLSGMYDHRYGDGEFTVQST--TGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIE 243
Query: 111 Y-ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGF 168
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++ G S + G
Sbjct: 244 IGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQMMQGM 303
Query: 169 GGSGGGRLGGF 179
G S G
Sbjct: 304 GVSAQSTYSGL 314
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 9 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 68
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 69 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 110
>gi|291243063|ref|XP_002741419.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H1-like
[Saccoglossus kowalevskii]
Length = 628
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENG-RPSGEADVDFATHEDAMQAMSKD 137
H +HMRGLPFRA ++++ FF+PV P V I YE+G R +GEADV+FATHEDA+ MSKD
Sbjct: 426 HVIHMRGLPFRATDQEIRQFFQPVNPTKVHIQYESGGRATGEADVEFATHEDAVAGMSKD 485
Query: 138 RTNMQHRYIELFLNSS 153
+ +MQHRYIELFLNSS
Sbjct: 486 KAHMQHRYIELFLNSS 501
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 19/118 (16%)
Query: 51 DRWNDRPGG-----FAGPRPGGRWVNESSGPSRH-----TVHMRGLPFRANERDVADFFR 100
+R ND G F + WV + SGP+ V +RGLPF ++ ++A FF
Sbjct: 156 ERHNDHMGHRYVEVFRSKKSEMDWVIKRSGPNAVQDNDGCVRLRGLPFGCSKEEIAQFFG 215
Query: 101 PV------VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ + + D H GR +GEA V F+T + A A+ K + + HRYIE+F +S
Sbjct: 216 GLEIVANGITLPTDYH---GRSTGEAYVQFSTKDIAENALGKHKERIGHRYIEIFKSS 270
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQA 133
+ + RGLP+ A +V FF+ + + GRPSGE ++ T ED A
Sbjct: 95 NVIRARGLPWSATADEVRSFFKGCKIAETENGIKFTYTREGRPSGECFIELETEEDVKVA 154
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGV 159
+ + +M HRY+E+F + S V
Sbjct: 155 LERHNDHMGHRYVEVFRSKKSEMDWV 180
>gi|73997922|ref|XP_848697.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Canis lupus familiaris]
gi|73997926|ref|XP_856894.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5
[Canis lupus familiaris]
gi|73997930|ref|XP_856973.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7
[Canis lupus familiaris]
gi|301763831|ref|XP_002917330.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 1
[Ailuropoda melanoleuca]
gi|301763833|ref|XP_002917331.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 2
[Ailuropoda melanoleuca]
gi|301763835|ref|XP_002917332.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 3
[Ailuropoda melanoleuca]
gi|301763837|ref|XP_002917333.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 4
[Ailuropoda melanoleuca]
gi|410975641|ref|XP_003994239.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Felis catus]
gi|410975643|ref|XP_003994240.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Felis catus]
gi|410975645|ref|XP_003994241.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Felis catus]
gi|281338546|gb|EFB14130.1| hypothetical protein PANDA_005550 [Ailuropoda melanoleuca]
Length = 414
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 104/200 (52%), Gaps = 26/200 (13%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-- 53
RP PYDR G A R+ G +G +R G G+ G GF D +
Sbjct: 206 RPGPYDRP---GTARRYIGIVKQAGLERMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGR 262
Query: 54 --NDRPGGFAGPRPG-GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIH 110
+ G R G G + +S+ + H VHMRGLP++A E D+ +FF P+ PV V I
Sbjct: 263 DLSYCLSGMYDHRYGDGEFTVQST--TGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIE 320
Query: 111 Y-ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGF 168
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++ G S + G
Sbjct: 321 IGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQMMQGM 380
Query: 169 GGSGGGRLGGFGGSDPSSPF 188
G S G S +
Sbjct: 381 GVSAQSTYSGLESQSVSGCY 400
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F VH I+ GR SGEA V+ + +D A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHF-IYTREGRQSGEAFVELESEDDVKMA 70
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
>gi|54020837|ref|NP_001005664.1| heterogeneous nuclear ribonucleoprotein H1 (H) [Xenopus (Silurana)
tropicalis]
gi|49257786|gb|AAH74690.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Xenopus (Silurana)
tropicalis]
gi|89269950|emb|CAJ83715.1| hnrph1 [Xenopus (Silurana) tropicalis]
Length = 441
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 71/111 (63%), Gaps = 11/111 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ FF P+ PV V I +GR +GEADV+FATHEDA+ AMSKD
Sbjct: 277 HCVHMRGLPYRATETDIYTFFSPLNPVRVHIEIGADGRVTGEADVEFATHEDAVAAMSKD 336
Query: 138 RTNMQHRYIELFLNSS----------SPRGGVGGSGSIGGFGGSGGGRLGG 178
+ NMQHRY+ELFLNS+ GG+ +G+ +G G L G
Sbjct: 337 KANMQHRYVELFLNSTAGGSSSAYSSQMMGGLAAAGAQTSYGSPGTQALSG 387
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + ++ +FF + +H I+ GRPSGEA V+F T ED A
Sbjct: 11 VVKVRGLPWSCSHDEIENFFSECKIANGLSGIHF-IYTREGRPSGEAFVEFETEEDLKLA 69
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR M HRY+E+F
Sbjct: 70 LKKDRATMGHRYVEVF 85
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 94 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 153
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 154 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 186
>gi|348560746|ref|XP_003466174.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cavia
porcellus]
Length = 414
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 95/165 (57%), Gaps = 25/165 (15%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-- 53
RP PYDR G A R+ G +G +R G G+ G GF D +
Sbjct: 205 RPGPYDRP---GTARRYIGIVKQAGLERMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGR 261
Query: 54 --NDRPGGFAGPRPG-GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIH 110
+ G R G G + +S+ + H VHMRGLP++A E D+ +FF P+ PV V I
Sbjct: 262 DLSYCLSGMYDHRYGDGEFTVQST--TGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIE 319
Query: 111 Y-ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++
Sbjct: 320 IGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT 364
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
+ V +RGLP+ + DV +F V VH I+ GR SGEA V+ + +D
Sbjct: 10 YVVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHF-IYTREGRQSGEAFVELESEDDVKM 68
Query: 133 AMSKDRTNMQHRYIELF 149
A+ KDR +M HRYIE+F
Sbjct: 69 ALKKDRESMGHRYIEVF 85
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 85 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 144
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 145 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 186
>gi|327277960|ref|XP_003223731.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Anolis carolinensis]
Length = 326
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 79/118 (66%), Gaps = 15/118 (12%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 181 HFVHMRGLPFRATENDIANFFSPLTPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 239
Query: 137 DRTNMQHRYIELFLNSS---------SPRGGV--GGSGSIGGFGGSGGGRLGGFGGSD 183
D+ +MQHRYIELFLNS+ R G+ GG GS+G G G GG+G D
Sbjct: 240 DKNHMQHRYIELFLNSTAGGGAGMGGYGRDGMDQGGYGSVGRM-GMGSSYSGGYGTPD 296
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 9/94 (9%)
Query: 69 WVNESSGP----SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEA 120
W + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WAGKHNGPNDSSSDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQ-GRSTGEA 61
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
V FA+ E A +A+ K + + HRYIE+F +S S
Sbjct: 62 FVQFASKEIAEKALGKHKERIGHRYIEIFKSSKS 95
>gi|47222987|emb|CAF99143.1| unnamed protein product [Tetraodon nigroviridis]
Length = 388
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 69/93 (74%), Gaps = 2/93 (2%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ PV V I +GR +GEADV+FATHEDA+ AMSKD
Sbjct: 267 HCVHMRGLPYRATETDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 326
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFG 169
+ NMQHRY+ELFLNS++ G GS +GG G
Sbjct: 327 KANMQHRYVELFLNSTAGGSNGSYGSQMMGGMG 359
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQA 133
+ V +RGLP+ + +V FF ++ IH+ GRPSGEA V+ T +D A
Sbjct: 6 YVVRIRGLPWSCSVDEVQRFFSGCKILNNGSGIHFTYTREGRPSGEAFVEMETEDDLKVA 65
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR M HRY+E+F
Sbjct: 66 VKKDRETMGHRYVEVF 81
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 15/89 (16%)
Query: 69 WVNESSGPS------RHTVHMRGLPFRANERDVADFFR--PVVP----VHVDIHYENGRP 116
WV + +GP+ + +RGLPF ++ ++ FF +VP + VDI GR
Sbjct: 90 WVMKHTGPNCPGTAGDGLIRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQ---GRS 146
Query: 117 SGEADVDFATHEDAMQAMSKDRTNMQHRY 145
+GEA V FA+ + A +A+ K + + HR+
Sbjct: 147 TGEAFVQFASQDIAEKALKKHKERIGHRW 175
>gi|354477666|ref|XP_003501040.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Cricetulus griseus]
Length = 340
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/118 (54%), Positives = 76/118 (64%), Gaps = 14/118 (11%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 253
Query: 137 DRTNMQHRYIELFLNSS---------SPRGGVGGSGSIGGFG--GSGGGRLGGFGGSD 183
D+ NMQHRYIELFLNS+ R G+ G G G G G GG+G D
Sbjct: 254 DKNNMQHRYIELFLNSTPGGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTPD 311
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|327277958|ref|XP_003223730.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Anolis carolinensis]
Length = 341
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 79/118 (66%), Gaps = 15/118 (12%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 196 HFVHMRGLPFRATENDIANFFSPLTPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 254
Query: 137 DRTNMQHRYIELFLNSS---------SPRGGV--GGSGSIGGFGGSGGGRLGGFGGSD 183
D+ +MQHRYIELFLNS+ R G+ GG GS+G G G GG+G D
Sbjct: 255 DKNHMQHRYIELFLNSTAGGGAGMGGYGRDGMDQGGYGSVGRM-GMGSSYSGGYGTPD 311
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 9/94 (9%)
Query: 69 WVNESSGP----SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEA 120
W + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WAGKHNGPNDSSSDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQ-GRSTGEA 61
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
V FA+ E A +A+ K + + HRYIE+F +S S
Sbjct: 62 FVQFASKEIAEKALGKHKERIGHRYIEIFKSSKS 95
>gi|354477668|ref|XP_003501041.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Cricetulus griseus]
gi|344247616|gb|EGW03720.1| Heterogeneous nuclear ribonucleoprotein H3 [Cricetulus griseus]
Length = 325
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/118 (54%), Positives = 76/118 (64%), Gaps = 14/118 (11%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 180 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 238
Query: 137 DRTNMQHRYIELFLNSS---------SPRGGVGGSGSIGGFG--GSGGGRLGGFGGSD 183
D+ NMQHRYIELFLNS+ R G+ G G G G G GG+G D
Sbjct: 239 DKNNMQHRYIELFLNSTPGGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTPD 296
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|62460420|ref|NP_001014860.1| heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|426255584|ref|XP_004021428.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Ovis aries]
gi|426255586|ref|XP_004021429.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Ovis aries]
gi|426255588|ref|XP_004021430.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Ovis aries]
gi|75070041|sp|Q5E9J1.3|HNRPF_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|59858223|gb|AAX08946.1| heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|74355042|gb|AAI02956.1| Heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|296472206|tpg|DAA14321.1| TPA: heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|440903473|gb|ELR54126.1| Heterogeneous nuclear ribonucleoprotein F, partial [Bos grunniens
mutus]
Length = 414
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 95/165 (57%), Gaps = 25/165 (15%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-- 53
RP PYDR G A R+ G +G +R G G+ G GF D +
Sbjct: 206 RPGPYDRP---GTARRYIGIVKQAGLERMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGR 262
Query: 54 --NDRPGGFAGPRPG-GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIH 110
+ G R G G + +S+ + H VHMRGLP++A E D+ +FF P+ PV V I
Sbjct: 263 DLSYCLSGMYDHRYGDGEFTVQST--TGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIE 320
Query: 111 Y-ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++
Sbjct: 321 IGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F V VH I+ GR SGEA V+ + +D A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESEDDVKLA 70
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
>gi|410914042|ref|XP_003970497.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Takifugu
rubripes]
Length = 406
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 69/93 (74%), Gaps = 2/93 (2%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ PV V I +GR +GEADV+FATHEDA+ AMSKD
Sbjct: 253 HCVHMRGLPYRATETDIYNFFSPLNPVRVHIEVGPDGRVTGEADVEFATHEDAVAAMSKD 312
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFG 169
+ NMQHRY+ELFLNS++ G GS +GG G
Sbjct: 313 KANMQHRYVELFLNSTAGGSNGSYGSQMMGGMG 345
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 15/96 (15%)
Query: 69 WVNESSGPS------RHTVHMRGLPFRANERDVADFFR--PVVP----VHVDIHYENGRP 116
WV + +GP+ + +RGLPF ++ ++ FF +VP + VDI GR
Sbjct: 90 WVMKHTGPNCPGTAGDGLIRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQ---GRS 146
Query: 117 SGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+GEA V FA+ + A +A+ K + + HRYIE+F +S
Sbjct: 147 TGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSS 182
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHV--DIHYE---NGRPSGEADVDFATHEDAMQA 133
+ V +RGLP+ + +V FF ++ IH+ GRPSGEA V+ + ED A
Sbjct: 6 YVVRIRGLPWSCSVDEVQRFFSGCKIINNGGAIHFTYTREGRPSGEAFVEMESEEDLKVA 65
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR M HRY+E+F
Sbjct: 66 VKKDRETMGHRYVEVF 81
>gi|148237217|ref|NP_001085008.1| heterogeneous nuclear ribonucleoprotein H1 (H) [Xenopus laevis]
gi|47507485|gb|AAH70969.1| MGC78776 protein [Xenopus laevis]
Length = 441
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 71/111 (63%), Gaps = 11/111 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ FF P+ PV V I +GR +GEADV+FA+HEDA+ AMSKD
Sbjct: 277 HCVHMRGLPYRATETDIYTFFSPLNPVRVHIEIGADGRVTGEADVEFASHEDAVAAMSKD 336
Query: 138 RTNMQHRYIELFLN----------SSSPRGGVGGSGSIGGFGGSGGGRLGG 178
+ NMQHRY+ELFLN SS GG+ +G+ +G G L G
Sbjct: 337 KANMQHRYVELFLNSTAGGSNNAYSSQMMGGLAAAGAQTSYGSPGTQALSG 387
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 80 TVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + ++ +FF + VH I+ GRPSGEA V+F T +D A
Sbjct: 11 VVKVRGLPWSCSHDEIENFFSESKIANGLSGVHF-IYTREGRPSGEAFVEFETEDDLQLA 69
Query: 134 MSKDRTNMQHRYIELFLNSS 153
+ KDR M HRY+E+F ++S
Sbjct: 70 VKKDRATMAHRYVEVFKSNS 89
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 94 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 153
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 154 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 186
>gi|355761375|gb|EHH61795.1| hypothetical protein EGM_19914 [Macaca fascicularis]
Length = 357
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 105/192 (54%), Gaps = 22/192 (11%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 114 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 173
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 174 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 230
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGG 170
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ GG + F
Sbjct: 231 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGGAYEHRYVELFLN 290
Query: 171 SGGGRLGGFGGS 182
S G GG GS
Sbjct: 291 STAGASGGAFGS 302
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 3 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 62
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 63 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 95
>gi|334313810|ref|XP_001369254.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Monodelphis domestica]
Length = 377
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 80/124 (64%), Gaps = 21/124 (16%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 226 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 284
Query: 137 DRTNMQHRYIELFLNSSS--------------PRGGV---GGSGSIGGFGGSGGGRLGGF 179
D+ NMQHRYIELFLNS++ R G+ GG GS+G G G GG+
Sbjct: 285 DKNNMQHRYIELFLNSTAGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRM-GMGSSYSGGY 343
Query: 180 GGSD 183
G D
Sbjct: 344 GTPD 347
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 9/98 (9%)
Query: 69 WVNESSGP----SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEA 120
WV + +GP S TV +RGLPF ++ ++ FF +VP + + + Y+ GR +GEA
Sbjct: 33 WVMKHNGPNDAASDGTVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQ-GRSTGEA 91
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 92 FVQFASKEIAENALGKHKERIGHRYIEIFKSSRSEIKG 129
>gi|53127638|emb|CAG31148.1| hypothetical protein RCJMB04_2m14 [Gallus gallus]
Length = 492
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 93/156 (59%), Gaps = 18/156 (11%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRWNDRPG 58
RP PYDR G N G GSG +R G GG+ G F +DR+
Sbjct: 236 RPGPYDRPGLTRGYNSLGRGSGLERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGR--- 292
Query: 59 GFAGPRPG-GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRP 116
G + R G G +S+ + H VHMRGLP+RA E D+ +FF P+ PV V I +GR
Sbjct: 293 GMSDHRYGDGTSTFQST--TGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRV 350
Query: 117 SGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS
Sbjct: 351 TGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 386
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 125 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 184
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 185 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 217
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQA 133
+ V +RGLP+ + +V FF ++ I+ GRPSGEA + + ED A
Sbjct: 41 YVVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLA 100
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR M HRY+E+F
Sbjct: 101 LKKDRETMGHRYVEVF 116
>gi|344252227|gb|EGW08331.1| Heterogeneous nuclear ribonucleoprotein F [Cricetulus griseus]
Length = 185
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP++A E D+ +FF P+ PV V I +GR +GEADV+FATHE+A+ AMSKD
Sbjct: 59 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 118
Query: 138 RTNMQHRYIELFLNSSS 154
R NMQHRYIELFLNS++
Sbjct: 119 RANMQHRYIELFLNSTT 135
>gi|58476100|gb|AAH89313.1| Hnrpf protein [Mus musculus]
Length = 395
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 97/184 (52%), Gaps = 24/184 (13%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-- 53
RP PYDR G A R+ G +G +R G G+ G GF D +
Sbjct: 186 RPGPYDRP---GTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGR 242
Query: 54 --NDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY 111
+ G R G S + H VHMRGLP++A E D+ +FF P+ PV V I
Sbjct: 243 DLSYCLSGMYDHRYGDSEFTVQS-TTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEI 301
Query: 112 -ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFG 169
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++ G S + G G
Sbjct: 302 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQVMQGMG 361
Query: 170 GSGG 173
S
Sbjct: 362 VSAA 365
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 66 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 125
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 126 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 167
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 102 VVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
V VH I+ GR SGEA V+ + +D A+ KDR +M HRYIE+F
Sbjct: 20 VAGVHF-IYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 66
>gi|326928641|ref|XP_003210484.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Meleagris gallopavo]
Length = 477
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 93/156 (59%), Gaps = 18/156 (11%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRWNDRPG 58
RP PYDR G N G GSG +R G GG+ G F +DR+
Sbjct: 221 RPGPYDRPGLTRGYNSLGRGSGLERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGR--- 277
Query: 59 GFAGPRPG-GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRP 116
G + R G G +S+ + H VHMRGLP+RA E D+ +FF P+ PV V I +GR
Sbjct: 278 GMSDHRYGDGTSTFQST--TGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRV 335
Query: 117 SGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS
Sbjct: 336 TGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 371
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 110 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 169
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 170 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 202
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQA 133
+ V +RGLP+ + +V FF ++ I+ GRPSGEA + + ED A
Sbjct: 26 YVVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLA 85
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR M HRY+E+F
Sbjct: 86 LKKDRETMGHRYVEVF 101
>gi|383417967|gb|AFH32197.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|410224062|gb|JAA09250.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
Length = 449
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 105/192 (54%), Gaps = 22/192 (11%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ P+ V I
Sbjct: 266 YCFSGMSDHRYGDGGSSFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGG 170
+GR +GEADV+FATHEDA+ AM+KD+ NMQHRY+ELFLNS++ GG + F
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGGAYDHSYVELFLN 382
Query: 171 SGGGRLGGFGGS 182
S G GG GS
Sbjct: 383 STAGASGGAYGS 394
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|19527048|ref|NP_598595.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|25742579|ref|NP_071792.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|82546815|ref|NP_001032362.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|82546817|ref|NP_001032363.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|82546819|ref|NP_001032364.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|261878597|ref|NP_001159899.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878599|ref|NP_001159900.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878601|ref|NP_001159901.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878603|ref|NP_001159902.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878605|ref|NP_001159903.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878607|ref|NP_001159904.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|81911895|sp|Q794E4.3|HNRPF_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|81918016|sp|Q9Z2X1.3|HNRPF_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|4153896|dbj|BAA37095.1| ribonucleoprotein F [Rattus norvegicus]
gi|17390408|gb|AAH18185.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|19343662|gb|AAH25481.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|22137695|gb|AAH29163.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|23274049|gb|AAH33483.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|66911957|gb|AAH97275.1| Heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|73909045|gb|AAI03635.1| Heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|148667168|gb|EDK99584.1| mCG133010, isoform CRA_a [Mus musculus]
gi|149049635|gb|EDM02089.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049636|gb|EDM02090.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049637|gb|EDM02091.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049638|gb|EDM02092.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049639|gb|EDM02093.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049640|gb|EDM02094.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
Length = 415
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 91/164 (55%), Gaps = 23/164 (14%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-- 53
RP PYDR G A R+ G +G +R G G+ G GF D +
Sbjct: 206 RPGPYDRP---GTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGR 262
Query: 54 --NDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY 111
+ G R G S + H VHMRGLP++A E D+ +FF P+ PV V I
Sbjct: 263 DLSYCLSGMYDHRYGDSEFTVQS-TTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEI 321
Query: 112 -ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++
Sbjct: 322 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
+ V +RGLP+ + DV +F V VH I+ GR SGEA V+ + +D
Sbjct: 11 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESEDDVKL 69
Query: 133 AMSKDRTNMQHRYIELF 149
A+ KDR +M HRYIE+F
Sbjct: 70 ALKKDRESMGHRYIEVF 86
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
>gi|20987708|gb|AAH29764.1| Hnrpf protein [Mus musculus]
Length = 338
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 91/164 (55%), Gaps = 23/164 (14%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-- 53
RP PYDR G A R+ G +G +R G G+ G GF D +
Sbjct: 129 RPGPYDRP---GTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGR 185
Query: 54 --NDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY 111
+ G R G S + H VHMRGLP++A E D+ +FF P+ PV V I
Sbjct: 186 DLSYCLSGMYDHRYGDSEFTVQS-TTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEI 244
Query: 112 -ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++
Sbjct: 245 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT 288
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 9 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 68
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 69 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 110
>gi|18605870|gb|AAH23162.1| Hnrpf protein, partial [Mus musculus]
Length = 188
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP++A E D+ +FF P+ PV V I +GR +GEADV+FATHE+A+ AMSKD
Sbjct: 62 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 121
Query: 138 RTNMQHRYIELFLNSSS 154
R NMQHRYIELFLNS++
Sbjct: 122 RANMQHRYIELFLNSTT 138
>gi|26345420|dbj|BAC36361.1| unnamed protein product [Mus musculus]
Length = 421
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 91/164 (55%), Gaps = 23/164 (14%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-- 53
RP PYDR G A R+ G +G +R G G+ G GF D +
Sbjct: 206 RPGPYDRP---GTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGR 262
Query: 54 --NDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY 111
+ G R G S + H VHMRGLP++A E D+ +FF P+ PV V I
Sbjct: 263 DLSYCLSGMYDHRYGDSEFTVQS-TTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEI 321
Query: 112 -ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++
Sbjct: 322 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
+ V +RGLP+ + DV +F V VH I+ GR SGEA V+ + +D
Sbjct: 11 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESEDDVKL 69
Query: 133 AMSKDRTNMQHRYIELF 149
A+ KDR +M HRYIE+F
Sbjct: 70 ALKKDRESMGHRYIEVF 86
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
>gi|149602744|ref|XP_001512376.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Ornithorhynchus anatinus]
Length = 332
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/78 (67%), Positives = 64/78 (82%), Gaps = 3/78 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 181 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 239
Query: 137 DRTNMQHRYIELFLNSSS 154
D+ NMQHRYIELFLNS++
Sbjct: 240 DKNNMQHRYIELFLNSTA 257
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 9/98 (9%)
Query: 69 WVNESSGP----SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEA 120
WV + +GP S TV +RGLPF ++ ++ FF +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDTASDGTVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQ-GRSTGEA 61
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 FVQFASKEIAENALGKHKERIGHRYIEIFKSSRSEIKG 99
>gi|443701155|gb|ELT99751.1| hypothetical protein CAPTEDRAFT_226859 [Capitella teleta]
Length = 390
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 65/77 (84%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKD 137
H+VHMRGLPF+A E D+ +FF+P+ PV++ IHY +G+ SG+ADVDFATH++A +AMS+D
Sbjct: 270 HSVHMRGLPFQAAEDDIVEFFKPLAPVNIAIHYMPDGKASGQADVDFATHQEASEAMSRD 329
Query: 138 RTNMQHRYIELFLNSSS 154
R +M+HRYIELFL SS
Sbjct: 330 RESMEHRYIELFLKSSE 346
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH-----VDIHY-ENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ A+ +VA+F V + + + Y ++GRPSGEA ++ A+ ED +A
Sbjct: 17 IVRIRGLPWSASHDEVANFLEADVNIMGGRSGIHLTYTKDGRPSGEAYIELASEEDVAKA 76
Query: 134 MSKDRTNMQHRYIE 147
+ KD+ +M RYIE
Sbjct: 77 LEKDKHHMGRRYIE 90
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 9/94 (9%)
Query: 68 RWVNESSGPSR------HTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSG 118
W+ + SGP++ + +RGLPF ++ +VA FF +VP + + + GR +G
Sbjct: 108 EWMVKRSGPNQVMGNNDAVIRLRGLPFGCSKEEVAHFFSGLEIVPNGITLMQDGQGRSTG 167
Query: 119 EADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+A V FA+ + A +A K + + HRYIE+F +S
Sbjct: 168 DAFVQFASQDIAERAQQKHKEKIGHRYIEIFKSS 201
>gi|351714958|gb|EHB17877.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 414
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 97/183 (53%), Gaps = 22/183 (12%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-N 54
+P PYD D A R+ G +G +R G G+ G GF D +
Sbjct: 205 QPGPYDHPDT---ARRYIGIVKQAGLERMRSGAYSAGYAGYEEYRGLSDCYGFTTDLFGR 261
Query: 55 DRPGGFAGPRPGGRWVNESSGPSR--HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
D +G G E + S H VHMRGLP++A E D+ +FF P+ P+ V I
Sbjct: 262 DLSYCLSGMYDHGFGDGEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPMRVHIEIG 321
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGG 170
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++ G S I G G
Sbjct: 322 PDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASSGAYSSQVIQGMGV 381
Query: 171 SGG 173
S
Sbjct: 382 SAA 384
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
+ V +RGLP+ + DV +F V VH I+ GR SGEA V+ + +D
Sbjct: 10 YVVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHF-IYTREGRQSGEAFVELESEDDVKM 68
Query: 133 AMSKDRTNMQHRYIELF 149
A+ KDR +M HRYIE+F
Sbjct: 69 ALKKDRESMGHRYIEVF 85
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 85 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 144
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 145 DPKGKITGEAFVQFASQELAEKALWKHKERIGHRYIEVFKSS 186
>gi|384946772|gb|AFI36991.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
Length = 449
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 106/192 (55%), Gaps = 22/192 (11%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGGFNNDRWNDRPGG---------- 59
RP PYDR G N G G+G +R GP GG+RG + NDR G
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGPYGGGYRGYDDYRGCNDRCGCRSDRFGKDCI 265
Query: 60 --FAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ P+ V I
Sbjct: 266 YCFSGMSDHGCGDGGSSFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGG 170
+GR +GEADV+FATHEDA+ AM+KD+ NMQHRY+ELFLNS++ GG + F
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGGAYDHSYVELFLN 382
Query: 171 SGGGRLGGFGGS 182
S G GG GS
Sbjct: 383 STAGASGGAYGS 394
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + E+ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|431904171|gb|ELK09593.1| Heterogeneous nuclear ribonucleoprotein H3 [Pteropus alecto]
Length = 405
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 254 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 312
Query: 137 DRTNMQHRYIELFLNSS 153
D+ NMQHRYIELFLNS+
Sbjct: 313 DKNNMQHRYIELFLNST 329
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 62 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 120
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 121 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 157
>gi|349605437|gb|AEQ00674.1| Heteroproteinous nuclear ribonucleoprotein H3-like protein, partial
[Equus caballus]
Length = 200
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 49 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 107
Query: 137 DRTNMQHRYIELFLNSS 153
D+ NMQHRYIELFLNS+
Sbjct: 108 DKNNMQHRYIELFLNST 124
>gi|26337751|dbj|BAC32561.1| unnamed protein product [Mus musculus]
Length = 479
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 76/112 (67%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +D+ + P + P V+ + PS H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 370 AFESDKEIELPKEMSEKLPEA--VDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVR 427
Query: 107 VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y + G+ +GEADV F THEDA+ AM KDR+++QHRYIELFLN S P+G
Sbjct: 428 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 478
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 310 REEIGNRYIEIF 321
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQA 133
+ + +GLP+ DV +FF + + IH+ +G+ G+A ++ + +D +A
Sbjct: 149 YLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKA 208
Query: 134 MSKDRTNMQHRYIELF 149
+ K R M RY+E++
Sbjct: 209 LEKHRMYMGQRYVEVY 224
>gi|26346715|dbj|BAC37006.1| unnamed protein product [Mus musculus]
Length = 479
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 76/112 (67%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +D+ + P + P V+ + PS H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 370 AFESDKEIELPKEMSEKLPEA--VDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVR 427
Query: 107 VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y + G+ +GEADV F THEDA+ AM KDR+++QHRYIELFLN S P+G
Sbjct: 428 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 478
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V + GLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 250 VVRLTGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 310 REEIGNRYIEIF 321
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQA 133
+ + +GLP+ DV +FF + + IH+ +G+ G+A ++ + +D +A
Sbjct: 149 YLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKA 208
Query: 134 MSKDRTNMQHRYIELF 149
+ K R M RY+E++
Sbjct: 209 LEKHRMYMGQRYVEVY 224
>gi|119574671|gb|EAW54286.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_e
[Homo sapiens]
Length = 177
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 26 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 84
Query: 137 DRTNMQHRYIELFLNSS 153
D+ NMQHRYIELFLNS+
Sbjct: 85 DKNNMQHRYIELFLNST 101
>gi|148596934|ref|NP_848815.2| G-rich sequence factor 1 isoform 1 [Mus musculus]
gi|55976518|sp|Q8C5Q4.2|GRSF1_MOUSE RecName: Full=G-rich sequence factor 1; Short=GRSF-1
gi|26336891|dbj|BAC32129.1| unnamed protein product [Mus musculus]
gi|182888413|gb|AAI60216.1| G-rich RNA sequence binding factor 1 [synthetic construct]
Length = 479
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 76/112 (67%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +D+ + P + P V+ + PS H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 370 AFESDKEIELPKEMSEKLPEA--VDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVR 427
Query: 107 VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y + G+ +GEADV F THEDA+ AM KDR+++QHRYIELFLN S P+G
Sbjct: 428 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 478
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 310 REEIGNRYIEIF 321
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQA 133
+ + +GLP+ DV +FF + + IH+ +G+ G+A ++ + +D +A
Sbjct: 149 YLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKA 208
Query: 134 MSKDRTNMQHRYIELF 149
+ K R M RY+E++
Sbjct: 209 LEKHRMYMGQRYVEVY 224
>gi|417400513|gb|JAA47194.1| Putative splicing factor hnrnp-f [Desmodus rotundus]
Length = 414
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 71/112 (63%), Gaps = 2/112 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP++A E D+ +FF P+ PV V I +GR +GEADV+FATHE+A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPF 188
R NMQHRYIELFLNS++ G S + G G S G S +
Sbjct: 349 RANMQHRYIELFLNSTTGASNGAYSSQMMQGMGVSAQSTYSGLESQSVSGCY 400
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F + +H I+ GR SGEA V+ + +D A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSGCIIHDGVAGIHF-IYTREGRQSGEAFVELESEDDVKMA 70
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
>gi|380806715|gb|AFE75233.1| heterogeneous nuclear ribonucleoprotein H, partial [Macaca mulatta]
Length = 112
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 71/99 (71%), Gaps = 5/99 (5%)
Query: 66 GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDF 124
GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I +GR +GEADV+F
Sbjct: 15 GGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 71
Query: 125 ATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGS 162
ATHEDA+ AMSKD+ NMQHRY+ELFLNS++ GG GS
Sbjct: 72 ATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGGAYGS 110
>gi|148688440|gb|EDL20387.1| heterogeneous nuclear ribonucleoprotein H2, isoform CRA_b [Mus
musculus]
Length = 460
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 300 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 359
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 360 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 405
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 106 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 165
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 166 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 198
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 60 FAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENG 114
A P + + G V +RGLP+ + +V FF + I+ G
Sbjct: 3 LATKSPSVTMMLSTEGREGFVVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREG 62
Query: 115 RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
RPSGEA V+ + ++ A+ KDR M HRY+E+F ++S
Sbjct: 63 RPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNS 101
>gi|351699543|gb|EHB02462.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 372
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 69/100 (69%), Gaps = 2/100 (2%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP++A E D+ +FF P+ PV V I +GR +GEADV+FATHE+A+ AMSKD
Sbjct: 246 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 305
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRL 176
R NMQHRYIELFLNS++ G S + G G S +
Sbjct: 306 RANMQHRYIELFLNSTTGASNGAYSSQVLQGMGVSAAQAI 345
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 75 GPSR---HTVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFA 125
GP R + V +RGLP+ + DV +F V VH I+ GR SGEA V+
Sbjct: 3 GPERGEAYVVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHF-IYTREGRQSGEAFVELE 61
Query: 126 THEDAMQAMSKDRTNMQHRYIELF 149
+ +D A+ KDR +M HRYIE+F
Sbjct: 62 SEDDVKMALKKDRESMGHRYIEVF 85
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 85 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 144
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 145 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 186
>gi|194376648|dbj|BAG57470.1| unnamed protein product [Homo sapiens]
Length = 404
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 78/119 (65%), Gaps = 11/119 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 244 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 303
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGF-----GGSGGG----RLGGFGGSDPSS 186
+ NMQHRY+ELFLNS++ GG + F G SGG +GG G S+ SS
Sbjct: 304 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSS 362
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + E+ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 113 NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
GR +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 103 QGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 142
>gi|119637823|ref|NP_001073293.1| heterogeneous nuclear ribonucleoprotein H3 [Mus musculus]
gi|157818423|ref|NP_001102002.1| heterogeneous nuclear ribonucleoprotein H3 [Rattus norvegicus]
gi|148700117|gb|EDL32064.1| mCG11326, isoform CRA_a [Mus musculus]
gi|149043914|gb|EDL97365.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_c [Rattus norvegicus]
gi|182887935|gb|AAI60206.1| Heterogeneous nuclear ribonucleoprotein H3 [synthetic construct]
Length = 346
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 76/123 (61%), Gaps = 19/123 (15%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 253
Query: 137 DRTNMQHRYIELFLNSS--------------SPRGGVGGSGSIGGFG--GSGGGRLGGFG 180
D+ NMQHRYIELFLNS+ R G+ G G G G G GG+G
Sbjct: 254 DKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNSYSGGYG 313
Query: 181 GSD 183
D
Sbjct: 314 APD 316
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|392355325|ref|XP_003752006.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Rattus
norvegicus]
gi|148700118|gb|EDL32065.1| mCG11326, isoform CRA_b [Mus musculus]
gi|149043912|gb|EDL97363.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_a [Rattus norvegicus]
Length = 331
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 79/124 (63%), Gaps = 21/124 (16%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 180 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 238
Query: 137 DRTNMQHRYIELFLNSS--------------SPRGGV---GGSGSIGGFGGSGGGRLGGF 179
D+ NMQHRYIELFLNS+ R G+ GG GS+G G G GG+
Sbjct: 239 DKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRM-GMGNSYSGGY 297
Query: 180 GGSD 183
G D
Sbjct: 298 GAPD 301
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|354495968|ref|XP_003510100.1| PREDICTED: G-rich sequence factor 1-like [Cricetulus griseus]
Length = 457
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 76/112 (67%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +D+ + P + P V+ S PS H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 348 AFESDKEIELPKEMSEKLP--ETVDFGSMPSLHFVHMRGLPFQANAQDIINFFAPLKPVR 405
Query: 107 VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y + G+ +GEADV F THEDA+ AM KDR+++QHRYIELFLN S P+G
Sbjct: 406 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 456
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 228 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 287
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 288 REEIGNRYIEIF 299
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQA 133
+ + +GLP+ DV +FF + + IH+ +G+ G+A ++ + +D +A
Sbjct: 127 YLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKA 186
Query: 134 MSKDRTNMQHRYIELF 149
+ K R M RY+E++
Sbjct: 187 LEKHRMYMGQRYVEVY 202
>gi|431892769|gb|ELK03202.1| Heterogeneous nuclear ribonucleoprotein H [Pteropus alecto]
Length = 435
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 2/99 (2%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ PV V I +GR +GEADV+FATHEDA+ AMSKD
Sbjct: 282 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 341
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRL 176
+ NMQHRY+ELFLNS++ G G + +GG +L
Sbjct: 342 KANMQHRYVELFLNSTAGASG-GAYANQSSYGGPASQQL 379
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|148673402|gb|EDL05349.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Mus musculus]
Length = 429
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 76/112 (67%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +D+ + P + P V+ + PS H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 320 AFESDKEIELPKEMSEKLPEA--VDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVR 377
Query: 107 VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y + G+ +GEADV F THEDA+ AM KDR+++QHRYIELFLN S P+G
Sbjct: 378 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 428
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 200 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 259
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 260 REEIGNRYIEIF 271
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQA 133
+ + +GLP+ DV +FF + + IH+ +G+ G+A ++ + +D +A
Sbjct: 99 YLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKA 158
Query: 134 MSKDRTNMQHRYIELF 149
+ K R M RY+E++
Sbjct: 159 LEKHRMYMGQRYVEVY 174
>gi|395849855|ref|XP_003797528.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Otolemur
garnettii]
Length = 243
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP++A E D+ +FF P+ PV V I +GR +GEADV+FATHE+A+ AMSKD
Sbjct: 117 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 176
Query: 138 RTNMQHRYIELFLNSSS 154
R NMQHRYIELFLNS++
Sbjct: 177 RANMQHRYIELFLNSTT 193
>gi|39644691|gb|AAH04511.2| HNRPH3 protein, partial [Homo sapiens]
Length = 207
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 56 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 114
Query: 137 DRTNMQHRYIELFLNSS 153
D+ NMQHRYIELFLNS+
Sbjct: 115 DKNNMQHRYIELFLNST 131
>gi|62078769|ref|NP_001014041.1| heterogeneous nuclear ribonucleoprotein H2 [Rattus norvegicus]
gi|81910860|sp|Q6AY09.1|HNRH2_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|50927747|gb|AAH79240.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Rattus norvegicus]
gi|149055432|gb|EDM07016.1| similar to Murine homolog of human ftp-3, isoform CRA_a [Rattus
norvegicus]
gi|149055433|gb|EDM07017.1| similar to Murine homolog of human ftp-3, isoform CRA_a [Rattus
norvegicus]
Length = 449
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 349 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 394
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|149755198|ref|XP_001493828.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Equus
caballus]
gi|291393212|ref|XP_002713068.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Oryctolagus
cuniculus]
gi|291408077|ref|XP_002720410.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Oryctolagus cuniculus]
gi|281341597|gb|EFB17181.1| hypothetical protein PANDA_019663 [Ailuropoda melanoleuca]
Length = 449
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 349 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 394
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|9624998|ref|NP_062543.1| heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens]
gi|74099697|ref|NP_001027565.1| heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens]
gi|197100479|ref|NP_001125156.1| heterogeneous nuclear ribonucleoprotein H2 [Pongo abelii]
gi|302565696|ref|NP_001180922.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|350536397|ref|NP_001233423.1| heterogeneous nuclear ribonucleoprotein H2 [Pan troglodytes]
gi|109131568|ref|XP_001094080.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 3
[Macaca mulatta]
gi|296236002|ref|XP_002763136.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Callithrix jacchus]
gi|332254772|ref|XP_003276506.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Nomascus
leucogenys]
gi|390480025|ref|XP_003735831.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Callithrix
jacchus]
gi|403298789|ref|XP_003940188.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 1
[Saimiri boliviensis boliviensis]
gi|403298791|ref|XP_003940189.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Saimiri boliviensis boliviensis]
gi|426396685|ref|XP_004064561.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 1
[Gorilla gorilla gorilla]
gi|426396687|ref|XP_004064562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Gorilla gorilla gorilla]
gi|426396689|ref|XP_004064563.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 3
[Gorilla gorilla gorilla]
gi|2500576|sp|P55795.1|HNRH2_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=FTP-3; AltName:
Full=Heterogeneous nuclear ribonucleoprotein H';
Short=hnRNP H'
gi|75070864|sp|Q5RD26.1|HNRH2_PONAB RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|1684915|gb|AAB64202.1| FTP3 [Homo sapiens]
gi|55727150|emb|CAH90331.1| hypothetical protein [Pongo abelii]
gi|119623269|gb|EAX02864.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Homo sapiens]
gi|120660030|gb|AAI30346.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Homo sapiens]
gi|120660336|gb|AAI30344.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Homo sapiens]
gi|168277748|dbj|BAG10852.1| heterogeneous nuclear ribonucleoprotein H' [synthetic construct]
gi|313883006|gb|ADR82989.1| heterogeneous nuclear ribonucleoprotein H2 (H') (HNRNPH2),
transcript variant 2 [synthetic construct]
gi|313883348|gb|ADR83160.1| heterogeneous nuclear ribonucleoprotein H2 (H') (HNRNPH2),
transcript variant 2 [synthetic construct]
gi|343958876|dbj|BAK63293.1| heterogeneous nuclear ribonucleoprotein H' [Pan troglodytes]
gi|380812318|gb|AFE78033.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|384946774|gb|AFI36992.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|410264162|gb|JAA20047.1| RPL36A-HNRNPH2 readthrough [Pan troglodytes]
gi|410303792|gb|JAA30496.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
gi|410303794|gb|JAA30497.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
gi|410355365|gb|JAA44286.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
gi|410355367|gb|JAA44287.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
Length = 449
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 349 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 394
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + E+ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|115496520|ref|NP_001069476.1| heterogeneous nuclear ribonucleoprotein H2 [Bos taurus]
gi|109892458|sp|Q3SZF3.1|HNRH2_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|74354329|gb|AAI02895.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Bos taurus]
Length = 449
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 349 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 394
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|355757549|gb|EHH61074.1| Heterogeneous nuclear ribonucleoprotein H2 [Macaca fascicularis]
Length = 449
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 349 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 394
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF + ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSNEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + E+ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|335310367|ref|XP_003361999.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like [Sus
scrofa]
Length = 444
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 284 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 343
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 344 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 389
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEA 120
WV + +GP+ V +RGLPF ++ ++ FF +VP + A
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGM----XXXXXXXXA 150
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 151 FVQFASQEIAEKALKKHKERIGHRYIEIFKSS 182
>gi|194389792|dbj|BAG60412.1| unnamed protein product [Homo sapiens]
Length = 355
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 195 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 254
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 255 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 300
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAM--- 131
V +RGLP+ + +V FF + I+ GRPSGEA V+ + E+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 132 -QAMSKDRTNMQHRYIELFLNS 152
+A+ K + + HRYIE+F +S
Sbjct: 72 EKALKKHKERIGHRYIEIFKSS 93
>gi|426257857|ref|XP_004022538.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Ovis aries]
gi|146231796|gb|ABQ12973.1| heterogeneous nuclear ribonucleoprotein H2 [Bos taurus]
gi|296471005|tpg|DAA13120.1| TPA: heterogeneous nuclear ribonucleoprotein H2 [Bos taurus]
gi|440901707|gb|ELR52599.1| Heterogeneous nuclear ribonucleoprotein H2 [Bos grunniens mutus]
Length = 449
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 349 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 394
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|74007970|ref|XP_861916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 3
[Canis lupus familiaris]
gi|345807788|ref|XP_862053.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 7
[Canis lupus familiaris]
Length = 449
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 349 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 394
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|348570626|ref|XP_003471098.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like [Cavia
porcellus]
Length = 449
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 349 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 394
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|9845253|ref|NP_063921.1| heterogeneous nuclear ribonucleoprotein H2 [Mus musculus]
gi|354474917|ref|XP_003499676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 1
[Cricetulus griseus]
gi|354474919|ref|XP_003499677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Cricetulus griseus]
gi|46577330|sp|P70333.1|HNRH2_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|1666700|gb|AAB47243.1| Murine homolog of human ftp-3 [Mus musculus]
gi|13529467|gb|AAH05461.1| Hnrph2 protein [Mus musculus]
gi|26346655|dbj|BAC36976.1| unnamed protein product [Mus musculus]
gi|74139495|dbj|BAE40886.1| unnamed protein product [Mus musculus]
gi|74207684|dbj|BAE40087.1| unnamed protein product [Mus musculus]
gi|74211079|dbj|BAE37634.1| unnamed protein product [Mus musculus]
gi|148688439|gb|EDL20386.1| heterogeneous nuclear ribonucleoprotein H2, isoform CRA_a [Mus
musculus]
gi|148688441|gb|EDL20388.1| heterogeneous nuclear ribonucleoprotein H2, isoform CRA_a [Mus
musculus]
gi|344238071|gb|EGV94174.1| Heterogeneous nuclear ribonucleoprotein H2 [Cricetulus griseus]
Length = 449
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 349 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 394
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|395851365|ref|XP_003798231.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Otolemur
garnettii]
Length = 415
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRGGFNNDRWNDRPGGFAGPRPG 66
RP PYDR+ G A R+ G +G +R G G+ +D GFA G
Sbjct: 205 RPGPYDRH---GTARRYMGIVKQAGLERMRPGAYSAGYGAYEEYGGLSDSGYGFATDVLG 261
Query: 67 GRWVNESSG-------------PSR--HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY 111
SG PS H VHMRGLP++A E D+ +FF P+ PV V I
Sbjct: 262 RDLSYCLSGMYDHRYGDGEFAVPSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEI 321
Query: 112 -ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFG 169
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++ G G + G G
Sbjct: 322 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSATGANNGAYGGQMVQGLG 381
Query: 170 GSG 172
S
Sbjct: 382 VSA 384
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 85 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVLFFTGLEIVPNGITLPV 144
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 145 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 188
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F +H I+ GR SGEA V+ + +D A
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSNCTIHDGPGGIHF-IYTREGRQSGEAFVELGSEDDVKMA 69
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 70 LKKDRESMGHRYIEVF 85
>gi|431895711|gb|ELK05132.1| Heterogeneous nuclear ribonucleoprotein H2 [Pteropus alecto]
Length = 422
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 262 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 321
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 322 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 367
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 68 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 127
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 128 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 160
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 109 IHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
I+ GRPSGEA V+ + ++ A+ KDR M HRY+E+F ++S
Sbjct: 19 IYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNS 63
>gi|112491343|pdb|2HGN|A Chain A, Nmr Structure Of The Third Qrrm Domain Of Human Hnrnp F
gi|297787489|pdb|2KG1|A Chain A, Structure Of The Third Qrrm Domain Of Hnrnp F In Complex
With A Agggau G-Tract Rna
Length = 139
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 70/106 (66%), Gaps = 9/106 (8%)
Query: 58 GGFAGPRPGGRWVNESSGPSR--------HTVHMRGLPFRANERDVADFFRPVVPVHVDI 109
G GG+ + SG S H VHMRGLP++A E D+ +FF P+ PV V I
Sbjct: 18 GSHMASMTGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHI 77
Query: 110 HY-ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++
Sbjct: 78 EIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT 123
>gi|327265516|ref|XP_003217554.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Anolis
carolinensis]
Length = 490
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 61/76 (80%), Gaps = 1/76 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ PV V I +GR +GEADV+FATHEDA+ AMSKD
Sbjct: 312 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 371
Query: 138 RTNMQHRYIELFLNSS 153
+ NMQHRY+ELFLNS+
Sbjct: 372 KANMQHRYVELFLNST 387
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQA 133
+ V +RGLP+ + +V FF ++ I+ GRPSGEA V+ T ED A
Sbjct: 41 YVVKVRGLPWSCSADEVQRFFSECKILNGSSGVRFIYTREGRPSGEAFVELETEEDVKSA 100
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR M HRY+E+F
Sbjct: 101 LKKDRETMGHRYVEVF 116
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 125 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 184
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 185 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 217
>gi|417401138|gb|JAA47465.1| Putative splicing factor hnrnp-f [Desmodus rotundus]
Length = 449
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 349 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 394
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|301755896|ref|XP_002913784.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Ailuropoda melanoleuca]
gi|281346969|gb|EFB22553.1| hypothetical protein PANDA_001623 [Ailuropoda melanoleuca]
Length = 346
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 253
Query: 137 DRTNMQHRYIELFLNSS 153
D+ NMQHRYIELFLNS+
Sbjct: 254 DKNNMQHRYIELFLNST 270
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|194042674|ref|XP_001929089.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5 [Sus
scrofa]
gi|335301642|ref|XP_003359253.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Sus scrofa]
gi|350592730|ref|XP_003483523.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Sus scrofa]
Length = 414
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 95/165 (57%), Gaps = 25/165 (15%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-- 53
RP PYDR G A R+ G +G +R G G+ G GF D +
Sbjct: 206 RPGPYDRP---GTARRYIGIVKQAGLERMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGR 262
Query: 54 --NDRPGGFAGPRPG-GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIH 110
+ G R G G + +S+ + H VHMRGLP++A E D+ +FF P+ PV V I
Sbjct: 263 DLSYCLSGMYDHRYGDGEFTVQST--TGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIE 320
Query: 111 Y-ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+GR +GEADV+FATH++A+ AMSKDR NMQHRYIELFLNS++
Sbjct: 321 IGPDGRVTGEADVEFATHDEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F VH I+ GR SGEA V+ + +D A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHF-IYTREGRQSGEAFVELESEDDVKMA 70
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
>gi|194379882|dbj|BAG58293.1| unnamed protein product [Homo sapiens]
Length = 238
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 87 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 145
Query: 137 DRTNMQHRYIELFLNSS 153
D+ NMQHRYIELFLNS+
Sbjct: 146 DKNNMQHRYIELFLNST 162
>gi|344275081|ref|XP_003409342.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Loxodonta africana]
Length = 350
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 76/123 (61%), Gaps = 19/123 (15%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 196 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 254
Query: 137 DRTNMQHRYIELFLNSS--------------SPRGGVGGSGSIGGFG--GSGGGRLGGFG 180
D+ NMQHRYIELFLNS+ R G+ G G G G G GG+G
Sbjct: 255 DKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYG 314
Query: 181 GSD 183
D
Sbjct: 315 TPD 317
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|344275083|ref|XP_003409343.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Loxodonta africana]
Length = 335
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 181 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 239
Query: 137 DRTNMQHRYIELFLNSS 153
D+ NMQHRYIELFLNS+
Sbjct: 240 DKNNMQHRYIELFLNST 256
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|51476543|emb|CAH18256.1| hypothetical protein [Homo sapiens]
Length = 194
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 95/163 (58%), Gaps = 21/163 (12%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 28 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 87
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 88 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 144
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++
Sbjct: 145 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA 187
>gi|5911913|emb|CAB55897.1| hypothetical protein [Homo sapiens]
gi|7739441|gb|AAF68848.1| hnRNP 2H9C [Homo sapiens]
gi|119574666|gb|EAW54281.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|119574669|gb|EAW54284.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|119574672|gb|EAW54287.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|119574673|gb|EAW54288.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|193787147|dbj|BAG52353.1| unnamed protein product [Homo sapiens]
Length = 215
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 64 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 122
Query: 137 DRTNMQHRYIELFLNSS 153
D+ NMQHRYIELFLNS+
Sbjct: 123 DKNNMQHRYIELFLNST 139
>gi|7739445|gb|AAF68850.1|AF132362_1 hnRNP 2H9B [Homo sapiens]
gi|7739437|gb|AAF68844.1| hnRNP 2H9B [Homo sapiens]
Length = 297
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 79/124 (63%), Gaps = 21/124 (16%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 146 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 204
Query: 137 DRTNMQHRYIELFLNSS--------------SPRGGV---GGSGSIGGFGGSGGGRLGGF 179
D+ NMQHRYIELFLNS+ R G+ GG GS+G G G GG+
Sbjct: 205 DKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRM-GMGNNYSGGY 263
Query: 180 GGSD 183
G D
Sbjct: 264 GTPD 267
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 113 NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
GR +GEA V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 4 QGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 49
>gi|14141159|ref|NP_067676.2| heterogeneous nuclear ribonucleoprotein H3 isoform b [Homo sapiens]
gi|291404273|ref|XP_002718502.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Oryctolagus cuniculus]
gi|296220548|ref|XP_002756353.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Callithrix jacchus]
gi|332218215|ref|XP_003258254.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Nomascus leucogenys]
gi|332834182|ref|XP_003312632.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Pan troglodytes]
gi|338716820|ref|XP_003363523.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Equus caballus]
gi|345798943|ref|XP_860394.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 3
[Canis lupus familiaris]
gi|397520485|ref|XP_003830347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Pan paniscus]
gi|402880660|ref|XP_003903916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Papio anubis]
gi|403273869|ref|XP_003928720.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Saimiri boliviensis boliviensis]
gi|410975231|ref|XP_003994037.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 3
[Felis catus]
gi|426364934|ref|XP_004049546.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Gorilla gorilla gorilla]
gi|7739443|gb|AAF68849.1|AF132361_1 hnRNP 2H9A [Homo sapiens]
gi|7739440|gb|AAF68847.1| hnRNP 2H9A [Homo sapiens]
gi|24981041|gb|AAH39824.1| Heterogeneous nuclear ribonucleoprotein H3 (2H9) [Homo sapiens]
gi|119574667|gb|EAW54282.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_c
[Homo sapiens]
gi|158256526|dbj|BAF84236.1| unnamed protein product [Homo sapiens]
gi|261861160|dbj|BAI47102.1| heterogeneous nuclear ribonucleoprotein H3 [synthetic construct]
gi|296472170|tpg|DAA14285.1| TPA: heterogeneous nuclear ribonucleoprotein H3 (2H9) [Bos taurus]
gi|380812320|gb|AFE78034.1| heterogeneous nuclear ribonucleoprotein H3 isoform b [Macaca
mulatta]
gi|410221432|gb|JAA07935.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410258986|gb|JAA17459.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410302444|gb|JAA29822.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410342071|gb|JAA39982.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
Length = 331
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 180 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 238
Query: 137 DRTNMQHRYIELFLNSS 153
D+ NMQHRYIELFLNS+
Sbjct: 239 DKNNMQHRYIELFLNST 255
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|395820624|ref|XP_003783663.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Otolemur garnettii]
Length = 331
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 180 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 238
Query: 137 DRTNMQHRYIELFLNSS 153
D+ NMQHRYIELFLNS+
Sbjct: 239 DKNNMQHRYIELFLNST 255
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|147906713|ref|NP_001086923.1| heterogeneous nuclear ribonucleoprotein H1 (H) [Xenopus laevis]
gi|50417963|gb|AAH77770.1| Hnrph2-prov protein [Xenopus laevis]
gi|84569955|gb|AAI10708.1| Hnrph2 protein [Xenopus laevis]
Length = 456
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 67/98 (68%), Gaps = 11/98 (11%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ FF P+ PV V I +GR +GEADV+FATHEDA+ AMSKD
Sbjct: 277 HCVHMRGLPYRATETDIYTFFSPLNPVRVHIEIGADGRVTGEADVEFATHEDAVAAMSKD 336
Query: 138 RTNMQHRYIELFLNSS----------SPRGGVGGSGSI 165
+ NMQHRY+ELFLNS+ GG+GG ++
Sbjct: 337 KANMQHRYVELFLNSTAGGSSSAYSSQMMGGLGGDANV 374
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + ++ +FF + +H I+ GRPSGEA V+F T ED
Sbjct: 11 VVKVRGLPWSCSHDEIENFFSECKIANGLSGIHF-IYTREGRPSGEAFVEFETEEDLKLG 69
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR M HRY+E+F
Sbjct: 70 LKKDRATMGHRYVEVF 85
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 94 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 153
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 154 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 186
>gi|417409638|gb|JAA51317.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 315
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 76/123 (61%), Gaps = 19/123 (15%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 164 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 222
Query: 137 DRTNMQHRYIELFLNSS--------------SPRGGVGGSGSIGGFG--GSGGGRLGGFG 180
D+ NMQHRYIELFLNS+ R G+ G G G G G GG+G
Sbjct: 223 DKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYG 282
Query: 181 GSD 183
D
Sbjct: 283 TPD 285
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 113 NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
GR +GEA V FA+ E A +A+ K + + HRYIE+F +S S G
Sbjct: 22 QGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFRSSRSEIKG 67
>gi|432101976|gb|ELK29797.1| Heterogeneous nuclear ribonucleoprotein H2 [Myotis davidii]
Length = 449
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 76/119 (63%), Gaps = 11/119 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGF---------GGSGGGRLGGFGGSDPSS 186
+ NMQHRY+ELFLNS++ GG + F G G +GG G S+ SS
Sbjct: 349 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASSGAYGSQMMGGMGLSNQSS 407
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|334327209|ref|XP_001378263.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Monodelphis domestica]
Length = 231
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 72/106 (67%), Gaps = 4/106 (3%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPV--HVDIHYENGRPSGEADVDFATHEDAMQA 133
+ H VHMRGLP+R E D+ +FF P PV H++I +GR +GE DV+FATHEDA+ A
Sbjct: 88 TTDHCVHMRGLPYRVTENDIYNFFSPFNPVREHIEIG-PDGRVTGEVDVEFATHEDAVAA 146
Query: 134 MSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGG 178
MSKD+ NMQHRY++LFLNS++ G GS +GG G S GG
Sbjct: 147 MSKDKANMQHRYVKLFLNSTAGASSGAYGSQMMGGMGLSNQSSYGG 192
>gi|194383864|dbj|BAG59290.1| unnamed protein product [Homo sapiens]
Length = 338
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP++A E D+ +FF P+ PV V I +GR +GEADV+FATHE+A+ AMSKD
Sbjct: 212 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 271
Query: 138 RTNMQHRYIELFLNSSS 154
R NMQHRYIELFLNS++
Sbjct: 272 RANMQHRYIELFLNSTT 288
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 9 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 68
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 69 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 110
>gi|351714959|gb|EHB17878.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 413
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 97/182 (53%), Gaps = 21/182 (11%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG----------GFNNDRW-ND 55
RP PYDR G A R+ G +G + G G+ G GF D + D
Sbjct: 205 RPGPYDRP---GTARRYIGIVKQTGLERMSSGAYSAGYGGFEYSGLSEGYGFTTDLFGRD 261
Query: 56 RPGGFAGPRPGGRWVNESSGPSR--HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-E 112
+G G E + S H VHMRGLP++A E D+ +FF P+ P+ V I
Sbjct: 262 LSYCLSGMYDHGFGDGEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPMRVHIEIGP 321
Query: 113 NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGS 171
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++ G S I G G S
Sbjct: 322 DGRVTGEADVEFATHEEAVPAMSKDRANMQHRYIELFLNSTTGASSGAYSSQVIQGMGVS 381
Query: 172 GG 173
Sbjct: 382 AA 383
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
+ V +RGLP+ + DV +F V VH I+ GR SGEA V+ + +D
Sbjct: 10 YVVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHF-IYTREGRQSGEAFVELESEDDVKM 68
Query: 133 AMSKDRTNMQHRYIELF 149
A+ KDR +M HRYIE+F
Sbjct: 69 ALKKDRESMGHRYIEVF 85
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 85 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 144
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 145 DPEGKITGEAFVQFASQELAEKALRKHKERIGHRYIEVFKSS 186
>gi|148596982|ref|NP_001091946.1| G-rich sequence factor 1 isoform 2 [Mus musculus]
Length = 362
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 76/112 (67%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +D+ + P + P V+ + PS H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 253 AFESDKEIELPKEMSEKLPEA--VDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVR 310
Query: 107 VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y + G+ +GEADV F THEDA+ AM KDR+++QHRYIELFLN S P+G
Sbjct: 311 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 361
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
>gi|14141157|ref|NP_036339.1| heterogeneous nuclear ribonucleoprotein H3 isoform a [Homo sapiens]
gi|343780936|ref|NP_001230484.1| heterogeneous nuclear ribonucleoprotein H3 [Sus scrofa]
gi|388452508|ref|NP_001253678.1| heterogeneous nuclear ribonucleoprotein H3 [Macaca mulatta]
gi|73952781|ref|XP_536369.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Canis lupus familiaris]
gi|149689928|ref|XP_001503654.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Equus caballus]
gi|291404271|ref|XP_002718501.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Oryctolagus cuniculus]
gi|296220546|ref|XP_002756352.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Callithrix jacchus]
gi|332218213|ref|XP_003258253.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Nomascus leucogenys]
gi|332834180|ref|XP_521495.3| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Pan troglodytes]
gi|397520483|ref|XP_003830346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Pan paniscus]
gi|402880658|ref|XP_003903915.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Papio anubis]
gi|403273867|ref|XP_003928719.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Saimiri boliviensis boliviensis]
gi|410975227|ref|XP_003994035.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Felis catus]
gi|410975229|ref|XP_003994036.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Felis catus]
gi|426364932|ref|XP_004049545.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Gorilla gorilla gorilla]
gi|23503095|sp|P31942.2|HNRH3_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein H3;
Short=hnRNP H3; AltName: Full=Heterogeneous nuclear
ribonucleoprotein 2H9; Short=hnRNP 2H9
gi|5542020|gb|AAD45179.1|L32610_1 ribonucleoprotein [Homo sapiens]
gi|7739436|gb|AAF68843.1| hnRNP 2H9 [Homo sapiens]
gi|119574665|gb|EAW54280.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_a
[Homo sapiens]
gi|119574670|gb|EAW54285.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_a
[Homo sapiens]
gi|351702487|gb|EHB05406.1| Heterogeneous nuclear ribonucleoprotein H3 [Heterocephalus glaber]
gi|355562560|gb|EHH19154.1| hypothetical protein EGK_19802 [Macaca mulatta]
gi|355782891|gb|EHH64812.1| hypothetical protein EGM_18125 [Macaca fascicularis]
gi|380784275|gb|AFE64013.1| heterogeneous nuclear ribonucleoprotein H3 isoform a [Macaca
mulatta]
gi|380812322|gb|AFE78035.1| heterogeneous nuclear ribonucleoprotein H3 isoform a [Macaca
mulatta]
gi|410221428|gb|JAA07933.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410221430|gb|JAA07934.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410258984|gb|JAA17458.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410258988|gb|JAA17460.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410302442|gb|JAA29821.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410302446|gb|JAA29823.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410342067|gb|JAA39980.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410342069|gb|JAA39981.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|432106705|gb|ELK32357.1| Heterogeneous nuclear ribonucleoprotein H3 [Myotis davidii]
gi|440895821|gb|ELR47915.1| Heterogeneous nuclear ribonucleoprotein H3 [Bos grunniens mutus]
Length = 346
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 76/123 (61%), Gaps = 19/123 (15%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 253
Query: 137 DRTNMQHRYIELFLNSS--------------SPRGGVGGSGSIGGFG--GSGGGRLGGFG 180
D+ NMQHRYIELFLNS+ R G+ G G G G G GG+G
Sbjct: 254 DKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYG 313
Query: 181 GSD 183
D
Sbjct: 314 TPD 316
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|395820622|ref|XP_003783662.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Otolemur garnettii]
Length = 346
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 76/123 (61%), Gaps = 19/123 (15%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 253
Query: 137 DRTNMQHRYIELFLNSS--------------SPRGGVGGSGSIGGFG--GSGGGRLGGFG 180
D+ NMQHRYIELFLNS+ R G+ G G G G G GG+G
Sbjct: 254 DKNNMQHRYIELFLNSTPGGSSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYG 313
Query: 181 GSD 183
D
Sbjct: 314 TPD 316
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|296480483|tpg|DAA22598.1| TPA: mCG11326-like [Bos taurus]
Length = 290
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 139 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 197
Query: 137 DRTNMQHRYIELFLNSS 153
D+ NMQHRYIELFLNS+
Sbjct: 198 DKNNMQHRYIELFLNST 214
>gi|426255652|ref|XP_004021462.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Ovis aries]
Length = 346
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 76/123 (61%), Gaps = 19/123 (15%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 253
Query: 137 DRTNMQHRYIELFLNSS--------------SPRGGVGGSGSIGGFG--GSGGGRLGGFG 180
D+ NMQHRYIELFLNS+ R G+ G G G G G GG+G
Sbjct: 254 DKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYG 313
Query: 181 GSD 183
D
Sbjct: 314 TPD 316
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASMEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|296220055|ref|XP_002756146.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Callithrix jacchus]
gi|403276785|ref|XP_003930066.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Saimiri boliviensis boliviensis]
gi|403276787|ref|XP_003930067.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Saimiri boliviensis boliviensis]
Length = 415
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP++A E D+ +FF P+ PV V I +GR +GEADV+FATHE+A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 138 RTNMQHRYIELFLNSSS 154
R NMQHRYIELFLNS++
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F VH I+ GR SGEA V+ + +D A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHF-IYTREGRQSGEAFVELGSEDDVKLA 70
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
>gi|62510677|sp|Q60HC3.3|HNRPF_MACFA RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|52782291|dbj|BAD51992.1| heterogeneous nuclear ribonucleoprotein F [Macaca fascicularis]
Length = 415
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP++A E D+ +FF P+ PV V I +GR +GEADV+FATHE+A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 138 RTNMQHRYIELFLNSSS 154
R NMQHRYIELFLNS++
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F VH I+ GR SGEA V+ + +D A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHF-IYTREGRQSGEAFVELGSEDDVKMA 70
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
>gi|390475715|ref|XP_003735008.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Callithrix jacchus]
Length = 421
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 76/123 (61%), Gaps = 19/123 (15%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 270 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 328
Query: 137 DRTNMQHRYIELFLNSS--------------SPRGGVGGSGSIGGFG--GSGGGRLGGFG 180
D+ NMQH+YIELFLNS+ R G+ G G G G G GG+G
Sbjct: 329 DKNNMQHQYIELFLNSTPAGGSGMGGSGMGGYGRDGMDNQGGYGSLGRMGMGNNYSGGYG 388
Query: 181 GSD 183
D
Sbjct: 389 TPD 391
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 44 FRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRH---TVHMRGLPFRANERDVADFFR 100
F GF D+ ++ G F WV + +GP+ TV +RGLPF ++ ++ FF+
Sbjct: 68 FARGFLEDQVSEVKGAFKSNGIEMDWVMKHNGPNDARDGTVRLRGLPFGCSKEEIVQFFQ 127
Query: 101 --PVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+VP + + + GR +GEA V FA+ E A+ K + + HRYIE+F +S
Sbjct: 128 GLEIVPNGITLMMDYQGRSTGEAFVQFASKEITENALGKHKERIGHRYIEIFRSS 182
>gi|348575706|ref|XP_003473629.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Cavia
porcellus]
Length = 372
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 76/123 (61%), Gaps = 19/123 (15%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 221 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 279
Query: 137 DRTNMQHRYIELFLNSS--------------SPRGGVGGSGSIGGFG--GSGGGRLGGFG 180
D+ NMQHRYIELFLNS+ R G+ G G G G G GG+G
Sbjct: 280 DKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYG 339
Query: 181 GSD 183
D
Sbjct: 340 TPD 342
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 29 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 87
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 88 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 124
>gi|426255654|ref|XP_004021463.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Ovis aries]
Length = 331
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 180 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 238
Query: 137 DRTNMQHRYIELFLNSS 153
D+ NMQHRYIELFLNS+
Sbjct: 239 DKNNMQHRYIELFLNST 255
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASMEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|383276062|dbj|BAM09220.1| heterogenous nuclear ribonucleoprotein F, partial [Ursus thibetanus
japonicus]
Length = 150
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP++A E D+ +FF P+ PV V I +GR +GEADV+FATHE+A+ AMSKD
Sbjct: 67 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 126
Query: 138 RTNMQHRYIELFLNSSS 154
R NMQHRYIELFLNS++
Sbjct: 127 RANMQHRYIELFLNSTT 143
>gi|291190682|ref|NP_001167168.1| Heterogeneous nuclear ribonucleoprotein H [Salmo salar]
gi|223648432|gb|ACN10974.1| Heterogeneous nuclear ribonucleoprotein H [Salmo salar]
Length = 396
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 91/160 (56%), Gaps = 24/160 (15%)
Query: 7 GFGRPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGGFNNDRWNDRPGGFAGPRPG 66
G RP PYDR G N GG RGG R G +D
Sbjct: 199 GMQRPGPYDRPSGGRGYNMMGG-------RGGGSYDRARRGGYGGGVSD----------- 240
Query: 67 GRWVNESSG---PSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADV 122
GR+ + SS + H VHMRGLP+RA E D+ +FF P+ PV V + +GR +GEADV
Sbjct: 241 GRYGDSSSSFQSTTGHCVHMRGLPYRATETDIYNFFSPLNPVRVHVEIGPDGRVTGEADV 300
Query: 123 DFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS 162
+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ GG GS
Sbjct: 301 EFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GGSNGS 338
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSR------HTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + SGP+ V +RGLPF ++ ++ F +VP + + + GR +GE
Sbjct: 91 WVMKHSGPNSPETTGDGLVRLRGLPFGCSKEEIVQFLSGLEIVPNGITLPLDFQGRSTGE 150
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ + A +A+ K + + HRYIE+F +S
Sbjct: 151 AFVQFASQDIAEKALKKHKERIGHRYIEIFKSS 183
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVH--VDIHYEN---GRPSGEADVDFATHEDAMQA 133
+ V +RGLP+ + +V FF + IH+ + GRPSGEA V+ +D A
Sbjct: 7 YVVRVRGLPWSCSVDEVRRFFSDCKIANNGTSIHFTSTREGRPSGEAFVELENEDDLKIA 66
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR M HRY+E+F
Sbjct: 67 VKKDRETMGHRYVEVF 82
>gi|344274318|ref|XP_003408964.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Loxodonta africana]
Length = 414
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP++A E D+ +FF P+ PV V I +GR +GEADV+FATHE+A+ AMSKD
Sbjct: 288 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 347
Query: 138 RTNMQHRYIELFLNSSS 154
R NMQHRYIELFLNS++
Sbjct: 348 RANMQHRYIELFLNSTT 364
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F V VH I+ GR SGEA V+ + ED A
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSECKIHDGVAGVHF-IYTREGRQSGEAFVELESEEDVKMA 69
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 70 LKKDRESMGHRYIEVF 85
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF ++P + +
Sbjct: 85 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIMPNGITLPV 144
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 145 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 186
>gi|417409472|gb|JAA51238.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 300
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 76/123 (61%), Gaps = 19/123 (15%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 149 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 207
Query: 137 DRTNMQHRYIELFLNSS--------------SPRGGVGGSGSIGGFG--GSGGGRLGGFG 180
D+ NMQHRYIELFLNS+ R G+ G G G G G GG+G
Sbjct: 208 DKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYG 267
Query: 181 GSD 183
D
Sbjct: 268 TPD 270
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 113 NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
GR +GEA V FA+ E A +A+ K + + HRYIE+F +S S G
Sbjct: 22 QGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFRSSRSEIKG 67
>gi|332244100|ref|XP_003271210.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Nomascus leucogenys]
gi|332244102|ref|XP_003271211.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Nomascus leucogenys]
gi|332244104|ref|XP_003271212.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Nomascus leucogenys]
Length = 415
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP++A E D+ +FF P+ PV V I +GR +GEADV+FATHE+A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 138 RTNMQHRYIELFLNSSS 154
R NMQHRYIELFLNS++
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F VH I+ GR SGEA V+ + +D A
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGAAGVHF-IYTREGRQSGEAFVELGSEDDVKMA 70
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
>gi|4826760|ref|NP_004957.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470397|ref|NP_001091678.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470400|ref|NP_001091677.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470402|ref|NP_001091675.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470404|ref|NP_001091674.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470406|ref|NP_001091676.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|350537293|ref|NP_001233466.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|386781898|ref|NP_001247944.1| heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|297686319|ref|XP_002820702.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Pongo abelii]
gi|297686321|ref|XP_002820703.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Pongo abelii]
gi|297686325|ref|XP_002820705.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4
[Pongo abelii]
gi|297686327|ref|XP_002820706.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5
[Pongo abelii]
gi|297686329|ref|XP_002820707.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 6
[Pongo abelii]
gi|297686331|ref|XP_002820708.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7
[Pongo abelii]
gi|297686333|ref|XP_002820709.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 8
[Pongo abelii]
gi|297686337|ref|XP_002820711.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 10
[Pongo abelii]
gi|297686339|ref|XP_002820712.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 11
[Pongo abelii]
gi|297686341|ref|XP_002820713.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 12
[Pongo abelii]
gi|297686343|ref|XP_002820714.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 13
[Pongo abelii]
gi|297686345|ref|XP_002820715.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 14
[Pongo abelii]
gi|395741477|ref|XP_003777588.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Pongo abelii]
gi|395741481|ref|XP_003777589.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Pongo abelii]
gi|397491662|ref|XP_003816768.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1 [Pan
paniscus]
gi|397491664|ref|XP_003816769.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2 [Pan
paniscus]
gi|397491666|ref|XP_003816770.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3 [Pan
paniscus]
gi|397491668|ref|XP_003816771.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4 [Pan
paniscus]
gi|397491670|ref|XP_003816772.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5 [Pan
paniscus]
gi|397491672|ref|XP_003816773.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 6 [Pan
paniscus]
gi|397491674|ref|XP_003816774.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7 [Pan
paniscus]
gi|397491676|ref|XP_003816775.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 8 [Pan
paniscus]
gi|397491678|ref|XP_003816776.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 9 [Pan
paniscus]
gi|397491680|ref|XP_003816777.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 10
[Pan paniscus]
gi|397491682|ref|XP_003816778.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 11
[Pan paniscus]
gi|397491684|ref|XP_003816779.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 12
[Pan paniscus]
gi|397491686|ref|XP_003816780.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 13
[Pan paniscus]
gi|426364503|ref|XP_004049345.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Gorilla gorilla gorilla]
gi|426364505|ref|XP_004049346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Gorilla gorilla gorilla]
gi|426364507|ref|XP_004049347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Gorilla gorilla gorilla]
gi|426364509|ref|XP_004049348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4
[Gorilla gorilla gorilla]
gi|1710628|sp|P52597.3|HNRPF_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; AltName: Full=Nucleolin-like protein
mcs94-1; Contains: RecName: Full=Heterogeneous nuclear
ribonucleoprotein F, N-terminally processed
gi|452048|gb|AAC37584.1| HnRNP F protein [Homo sapiens]
gi|12655155|gb|AAH01432.1| Heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|13279032|gb|AAH04254.1| Heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|15990432|gb|AAH15580.1| HNRPF protein [Homo sapiens]
gi|67967777|dbj|BAE00371.1| unnamed protein product [Macaca fascicularis]
gi|76780063|gb|AAI06009.1| HNRPF protein [Homo sapiens]
gi|119607001|gb|EAW86595.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607002|gb|EAW86596.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607003|gb|EAW86597.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607004|gb|EAW86598.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607005|gb|EAW86599.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|123997411|gb|ABM86307.1| heterogeneous nuclear ribonucleoprotein F [synthetic construct]
gi|157929032|gb|ABW03801.1| heterogeneous nuclear ribonucleoprotein F [synthetic construct]
gi|168277548|dbj|BAG10752.1| heterogeneous nuclear ribonucleoprotein F [synthetic construct]
gi|193785530|dbj|BAG50896.1| unnamed protein product [Homo sapiens]
gi|343959614|dbj|BAK63664.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|355562388|gb|EHH18982.1| Heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|355782737|gb|EHH64658.1| Heterogeneous nuclear ribonucleoprotein F [Macaca fascicularis]
gi|380785399|gb|AFE64575.1| heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|384946770|gb|AFI36990.1| heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|410262002|gb|JAA18967.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410262004|gb|JAA18968.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410262006|gb|JAA18969.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410262008|gb|JAA18970.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299574|gb|JAA28387.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299576|gb|JAA28388.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299578|gb|JAA28389.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299580|gb|JAA28390.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299582|gb|JAA28391.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340859|gb|JAA39376.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340861|gb|JAA39377.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340863|gb|JAA39378.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340865|gb|JAA39379.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340867|gb|JAA39380.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340869|gb|JAA39381.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
Length = 415
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP++A E D+ +FF P+ PV V I +GR +GEADV+FATHE+A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 138 RTNMQHRYIELFLNSSS 154
R NMQHRYIELFLNS++
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F VH I+ GR SGEA V+ + +D A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHF-IYTREGRQSGEAFVELGSEDDVKMA 70
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
>gi|26354144|dbj|BAC40702.1| unnamed protein product [Mus musculus]
Length = 344
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 76/112 (67%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +D+ + P + P V+ + PS H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 235 AFESDKEIELPKEMSEKLPEA--VDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVR 292
Query: 107 VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y + G+ +GEADV F THEDA+ AM KDR+++QHRYIELFLN S P+G
Sbjct: 293 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 343
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 115 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 174
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 175 REEIGNRYIEIF 186
>gi|402880032|ref|XP_003903619.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Papio anubis]
gi|402880034|ref|XP_003903620.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Papio anubis]
gi|402880036|ref|XP_003903621.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Papio anubis]
gi|402880038|ref|XP_003903622.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4
[Papio anubis]
gi|402880040|ref|XP_003903623.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5
[Papio anubis]
gi|402880042|ref|XP_003903624.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 6
[Papio anubis]
gi|402880044|ref|XP_003903625.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7
[Papio anubis]
gi|402880046|ref|XP_003903626.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 8
[Papio anubis]
gi|402880048|ref|XP_003903627.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 9
[Papio anubis]
gi|402880050|ref|XP_003903628.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 10
[Papio anubis]
gi|402880052|ref|XP_003903629.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 11
[Papio anubis]
gi|402880054|ref|XP_003903630.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 12
[Papio anubis]
gi|402880056|ref|XP_003903631.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 13
[Papio anubis]
gi|402880058|ref|XP_003903632.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 14
[Papio anubis]
Length = 415
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP++A E D+ +FF P+ PV V I +GR +GEADV+FATHE+A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 138 RTNMQHRYIELFLNSSS 154
R NMQHRYIELFLNS++
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F VH I+ GR SGEA V+ + +D A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHF-IYTREGRQSGEAFVELGSEDDVKMA 70
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
>gi|291412565|ref|XP_002722547.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Oryctolagus cuniculus]
Length = 415
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP++A E D+ +FF P+ PV V I +GR +GEADV+FATHE+A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 138 RTNMQHRYIELFLNSSS 154
R NMQHRYIELFLNS++
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F VH I+ GR SGEA V+ + +D A
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGAAGVHF-IYTREGRQSGEAFVELESEDDVKMA 70
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
>gi|16876910|gb|AAH16736.1| HNRPF protein [Homo sapiens]
Length = 415
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP++A E D+ +FF P+ PV V I +GR +GEADV+FATHE+A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 138 RTNMQHRYIELFLNSSS 154
R NMQHRYIELFLNS++
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F VH I+ GR SGEA V+ + +D A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHF-IYTREGRQSGEAFVELGSEDDVKMA 70
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FRSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
>gi|349605885|gb|AEQ00971.1| Heteroproteinous nuclear ribonucleoprotein H2-like protein, partial
[Equus caballus]
Length = 270
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 87/144 (60%), Gaps = 11/144 (7%)
Query: 47 GFNNDRW-NDRPGGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFR 100
GF +DR+ D F+G GG ++G H VHMRGLP+RA E D+ +FF
Sbjct: 75 GFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTG---HCVHMRGLPYRATENDIYNFFS 131
Query: 101 PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS-PRGG 158
P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD+ NMQHRY+ELFLNS++ GG
Sbjct: 132 PLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGG 191
Query: 159 VGGSGSIGGFGGSGGGRLGGFGGS 182
+ F S G GG GS
Sbjct: 192 AYDHSYVELFLNSTAGASGGAYGS 215
>gi|148673403|gb|EDL05350.1| G-rich RNA sequence binding factor 1, isoform CRA_b [Mus musculus]
Length = 403
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 76/112 (67%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +D+ + P + P V+ + PS H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 294 AFESDKEIELPKEMSEKLPEA--VDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVR 351
Query: 107 VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y + G+ +GEADV F THEDA+ AM KDR+++QHRYIELFLN S P+G
Sbjct: 352 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 402
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 174 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 233
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 234 REEIGNRYIEIF 245
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQA 133
+ + +GLP+ DV +FF + + IH+ +G+ G+A ++ + +D +A
Sbjct: 73 YLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKA 132
Query: 134 MSKDRTNMQHRYIELF 149
+ K R M RY+E++
Sbjct: 133 LEKHRMYMGQRYVEVY 148
>gi|395541913|ref|XP_003772881.1| PREDICTED: G-rich sequence factor 1 [Sarcophilus harrisii]
Length = 441
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAM 134
PS H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+ AM
Sbjct: 359 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAIAAM 418
Query: 135 SKDRTNMQHRYIELFLNSSSPRG 157
SKDR+++QHRYIELFLN S P+G
Sbjct: 419 SKDRSHVQHRYIELFLN-SCPKG 440
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + + R +GEA V F E A QA+ K
Sbjct: 213 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDHRGRRKTGEAYVQFEEPEMANQALLKH 272
Query: 138 RTNMQHRYIELF 149
+ + +RYIE+F
Sbjct: 273 KEEIGNRYIEIF 284
>gi|159155917|gb|AAI54577.1| Heterogeneous nuclear ribonucleoprotein H1 [Danio rerio]
Length = 403
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ PV V + +GR +GEADV+FATHEDA+ AMSKD
Sbjct: 251 HCVHMRGLPYRATETDIYNFFSPLNPVRVHLEIGPDGRVTGEADVEFATHEDAVAAMSKD 310
Query: 138 RTNMQHRYIELFLNSSS 154
+ NMQHRY+ELFLNS++
Sbjct: 311 KANMQHRYVELFLNSTA 327
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + IH+ GRPSGEA V+F + ED A+
Sbjct: 8 VVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESEEDLKSAV 67
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 68 KKDRETMGHRYVEVFKSNS 86
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPS------RHTVHMRGLPFRANERDVADFF--RPVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 91 WVLKHTGPNCPDTGGDGLVRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQGRSTGE 150
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ + A +A+ K + + HRYIE+F +S
Sbjct: 151 AFVQFASQDIAEKALKKHKERIGHRYIEIFKSS 183
>gi|45387779|ref|NP_991247.1| heterogeneous nuclear ribonucleoprotein H1 [Danio rerio]
gi|41107558|gb|AAH65439.1| Heterogeneous nuclear ribonucleoprotein H1 [Danio rerio]
Length = 403
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ PV V + +GR +GEADV+FATHEDA+ AMSKD
Sbjct: 251 HCVHMRGLPYRATETDIYNFFSPLNPVRVHLEIGPDGRVTGEADVEFATHEDAVAAMSKD 310
Query: 138 RTNMQHRYIELFLNSSS 154
+ NMQHRY+ELFLNS++
Sbjct: 311 KANMQHRYVELFLNSTA 327
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + IH+ GRPSGEA V+F + ED A+
Sbjct: 8 VVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESEEDLKIAV 67
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 68 KKDRETMGHRYVEVFKSNS 86
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPS------RHTVHMRGLPFRANERDVADFF--RPVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 91 WVLKHTGPNCPETGGDGLVRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQGRSTGE 150
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ + A +A+ K + + HRYIE+F +S
Sbjct: 151 AFVQFASQDIAEKALKKHKERIGHRYIEIFKSS 183
>gi|380806713|gb|AFE75232.1| heterogeneous nuclear ribonucleoprotein H, partial [Macaca mulatta]
Length = 118
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 71/98 (72%), Gaps = 6/98 (6%)
Query: 66 GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDF 124
GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I +GR +GEADV+F
Sbjct: 15 GGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 71
Query: 125 ATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS 162
ATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 72 ATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGA 107
>gi|432852531|ref|XP_004067294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Oryzias
latipes]
Length = 398
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 65/78 (83%), Gaps = 3/78 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA+E DVA FF P++P VH+D+ NG+ +GEADV+F +HEDA+ AMSK
Sbjct: 295 HFVHMRGLPFRASEGDVAKFFSPLIPLRVHIDVA-PNGKSTGEADVEFRSHEDAVAAMSK 353
Query: 137 DRTNMQHRYIELFLNSSS 154
D+ +MQHRYIELFLNS++
Sbjct: 354 DKNHMQHRYIELFLNSTA 371
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 19/121 (15%)
Query: 60 FAGPRPGGRWVNESSGPSRH------TVHMRGLPFRANERDVADFFR--PVVP--VHVDI 109
F R WV + +GP+ + + +RGLPF ++ ++ FF +VP + + +
Sbjct: 83 FKSNRSEMDWVLKRNGPADYDSCSGCMLRLRGLPFGCSKEEIVQFFSGLRIVPNGITLPV 142
Query: 110 HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS--------PRGGVGG 161
Y+ GR +GEA V FA+ E A +A+ K + + HRYIE+F +S + PR G+GG
Sbjct: 143 DYQ-GRSTGEAFVQFASKEIAEKALGKHKERIGHRYIEIFKSSRNEIRAYYDVPRRGLGG 201
Query: 162 S 162
Sbjct: 202 Q 202
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 79 HTVHMRGLPFRANERDVADFFRPV-----VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
+ V +RGLP+ + +VA FF + + + GRPSGEA ++ T ED A
Sbjct: 8 YVVRIRGLPWSCTQEEVASFFSDCDIMGKINGVCFTYSKEGRPSGEAFLELKTAEDFKNA 67
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGV 159
++KDR M HRYIE+F ++ S V
Sbjct: 68 LAKDRKYMGHRYIEVFKSNRSEMDWV 93
>gi|148707962|gb|EDL39909.1| mCG129396 [Mus musculus]
Length = 415
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 90/164 (54%), Gaps = 23/164 (14%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-- 53
RP PYDR G A R+ G +G +R G G+ G GF D +
Sbjct: 206 RPGPYDRP---GTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGR 262
Query: 54 --NDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY 111
+ G R G S + H VHMRGLP++A E D+ +FF P PV V I
Sbjct: 263 DLSYCLSGMYDHRYGDSEFTVQS-TTGHRVHMRGLPYKATENDIYNFFSPFNPVRVHIEI 321
Query: 112 -ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++
Sbjct: 322 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
+ V +RGLP+ + DV +F V VH I+ G SGEA V+ + +D
Sbjct: 11 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTREGSQSGEAFVELESEDDVKL 69
Query: 133 AMSKDRTNMQHRYIELF 149
A+ KDR +M H YIE+F
Sbjct: 70 ALKKDRESMGHPYIEVF 86
>gi|45709575|gb|AAH67720.1| Zgc:85960 protein [Danio rerio]
Length = 302
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ PV V I +GR +GEADV+FATHEDA+ AMSKD
Sbjct: 149 HCVHMRGLPYRATEPDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 208
Query: 138 RTNMQHRYIELFLNSSS 154
+ NMQHRY+ELFLNS++
Sbjct: 209 KANMQHRYVELFLNSTA 225
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 113 NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS--------PRGGVG 160
GR +GEA V FA+ + A +A+ K + + HRYIE+F +S + PR G+G
Sbjct: 39 QGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYEPPRKGMG 94
>gi|148670393|gb|EDL02340.1| mCG50680 [Mus musculus]
Length = 338
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 90/164 (54%), Gaps = 23/164 (14%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-- 53
RP PYDR G A R+ G +G +R G G+ G GF D +
Sbjct: 129 RPGPYDRP---GTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGR 185
Query: 54 --NDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY 111
+ G R G S + H VHMRGL ++A E D+ +FF P+ PV V I
Sbjct: 186 DLSYCLSGMYDHRYGDSEFTVQS-TTGHCVHMRGLSYKATENDIYNFFSPLNPVRVHIEI 244
Query: 112 -ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++
Sbjct: 245 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT 288
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 9 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 68
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 69 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 110
>gi|330864791|ref|NP_001193508.1| heterogeneous nuclear ribonucleoprotein H3 [Bos taurus]
Length = 317
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMS+
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSR 253
Query: 137 DRTNMQHRYIELFLNSS 153
D+ NMQHRYIELFLNS+
Sbjct: 254 DKNNMQHRYIELFLNST 270
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|449685013|ref|XP_002164898.2| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Hydra
magnipapillata]
Length = 365
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/145 (48%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGGFNNDRWNDRPGGFAGPRPGGRW 69
RP PYDR F G R GG GP G + G F +R +R G G
Sbjct: 129 RPGPYDRPQNFNGPRRGRGGVQLGP-SGFNTAPSYSGDFGRNRSMNRGGRSGGMGMSKTP 187
Query: 70 VNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHE 128
+SS + H+VHMRGLPF A+ D+ FF P+ PV V + +E NGRP GE DVDFATH
Sbjct: 188 TVQSS-KTGHSVHMRGLPFEASVSDIVTFFSPLNPVDVRLMFEPNGRPKGECDVDFATHS 246
Query: 129 DAMQAMSKDRTNMQHRYIELFLNSS 153
DA AM KD+ NM HRYIELFL SS
Sbjct: 247 DAESAMLKDKQNMGHRYIELFLKSS 271
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 68 RWVNESSGPSRH--TVHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADV 122
WV SR V +RGLPF + D+A+FF + P + I ++GR SG+A V
Sbjct: 17 EWVVNRMDNSRSEAIVRLRGLPFDCTKHDIAEFFSGLDISPYGITITMNQDGRASGDAYV 76
Query: 123 DFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGS 164
+F T +DA A+ K + + HRYIE+F +S V G+ S
Sbjct: 77 EFVTQQDAENALLKHKEKIGHRYIEIFQSSKDDIKYVVGTRS 118
>gi|62898443|dbj|BAD97161.1| heterogeneous nuclear ribonucleoprotein H3 isoform a variant [Homo
sapiens]
Length = 346
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 76/123 (61%), Gaps = 19/123 (15%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 253
Query: 137 DRTNMQHRYIELFLNSS--------------SPRGGVGGSGSIGGFG--GSGGGRLGGFG 180
D+ NMQHRYI+LFLNS+ R G+ G G G G G GG+G
Sbjct: 254 DKNNMQHRYIKLFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYG 313
Query: 181 GSD 183
D
Sbjct: 314 TPD 316
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|395857260|ref|XP_003801023.1| PREDICTED: G-rich sequence factor 1 [Otolemur garnettii]
Length = 528
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F N++ + P + P V+ + PS H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 419 AFENEKEIELPKEMSEKLPEA--VDFGATPSLHFVHMRGLPFQANAQDIINFFAPLKPVR 476
Query: 107 VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y + G+ +GEADV F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 477 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 527
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ +E+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 299 VVRLRGLPYSCDEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 358
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 359 REEIGNRYIEIF 370
>gi|291401649|ref|XP_002717080.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like, partial
[Oryctolagus cuniculus]
Length = 482
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +++ + P + P V+ + PS H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 373 AFESEKEIELPKEMSEKLPEA--VDLGTTPSLHFVHMRGLPFQANAQDIINFFAPLKPVR 430
Query: 107 VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y + G+ +GEADV F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 431 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 481
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 253 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 312
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 313 REEIGNRYIEIF 324
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQAMS 135
+ +GLP+ DV FF + + IH+ +G+ G+A ++ + +D +A+
Sbjct: 154 IRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 213
Query: 136 KDRTNMQHRYIELF 149
K R M RY+E++
Sbjct: 214 KHRMYMGQRYVEVY 227
>gi|126330654|ref|XP_001364439.1| PREDICTED: g-rich sequence factor 1 isoform 1 [Monodelphis
domestica]
Length = 478
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 68/97 (70%), Gaps = 2/97 (2%)
Query: 62 GPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEA 120
P + + PS H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEA
Sbjct: 382 APEKSAEAADFGTMPSLHFVHMRGLPFQANAQDIVNFFAPLKPVRITMEYSSSGKATGEA 441
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
DV F THEDA+ AM KDR+++QHRYIELFLN S P+G
Sbjct: 442 DVHFETHEDAVAAMGKDRSHVQHRYIELFLN-SCPKG 477
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF ++ + + + + +GEA V F E A QA+ K
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIIDITFVMDHRGRKKTGEAYVQFEEPEMANQALLKH 309
Query: 138 RTNMQHRYIELF 149
+ + +RYIE+F
Sbjct: 310 KEEIGNRYIEIF 321
>gi|355705000|gb|EHH30925.1| Heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
Length = 449
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 73/122 (59%), Gaps = 22/122 (18%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSS---------------------PRGGVGGSGSIGGFGGSGGGRL 176
+ NMQHRY+ELFLNS++ GG GS +GG G S
Sbjct: 349 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSY 408
Query: 177 GG 178
GG
Sbjct: 409 GG 410
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 109 IHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
I+ GRPSGEA V+ + E+ A+ KDR M HRY+E+F ++S
Sbjct: 46 IYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNS 90
>gi|344284915|ref|XP_003414210.1| PREDICTED: G-rich sequence factor 1 [Loxodonta africana]
Length = 484
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 76/111 (68%), Gaps = 4/111 (3%)
Query: 48 FNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHV 107
F +++ + P + P V+ + PS H VHMRGLPF+AN +D+ +FF P+ PV +
Sbjct: 376 FESEKEIELPKEMSEKLPEA--VDFGATPSVHFVHMRGLPFQANAQDIINFFAPLKPVRI 433
Query: 108 DIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ Y + G+ +GEADV F+THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 434 TMEYSSSGKATGEADVHFSTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 483
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 255 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 314
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 315 REEIGNRYIEIF 326
>gi|410912106|ref|XP_003969531.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Takifugu
rubripes]
Length = 371
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLPFRA E DVA FF P+ P+ V I + NG+ +GEADV+F +HEDA+ AMSKD
Sbjct: 263 HFVHMRGLPFRATEGDVAKFFSPLNPLRVHIDFAPNGKSTGEADVEFRSHEDAVAAMSKD 322
Query: 138 RTNMQHRYIELFLNSSS 154
+ +MQHRYIELFLNS+S
Sbjct: 323 KNHMQHRYIELFLNSTS 339
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 19/121 (15%)
Query: 60 FAGPRPGGRWVNESSGPSRH------TVHMRGLPFRANERDVADFFR--PVVP--VHVDI 109
F R WV + SGP+ + T+ +RGLPF ++ ++ FF +VP + + +
Sbjct: 83 FKSNRSEMDWVLKRSGPADYDSCSGCTLRLRGLPFGCSKEEIVQFFSGLRIVPNGITLPV 142
Query: 110 HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS--------SSPRGGVGG 161
Y+ GR +GEA V FA+ E A +A+ K + + HRYIE+F +S PR G+GG
Sbjct: 143 DYQ-GRSTGEAFVQFASKEIAEKALGKHKERIGHRYIEIFKSSRNEIRAYYELPRRGMGG 201
Query: 162 S 162
Sbjct: 202 Q 202
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPV-----HVDIHYENGRPSGEADVDFATHEDAMQA 133
+ V +RGLP+ + +VA FF + + + GRPSGEA ++ T ED A
Sbjct: 8 YVVRIRGLPWSCTQEEVAGFFSDCDIIGKVNGVCFTYSKEGRPSGEAFIELKTAEDFKNA 67
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGV 159
++KDR M HRYIE+F ++ S V
Sbjct: 68 LAKDRKYMGHRYIEVFKSNRSEMDWV 93
>gi|224052106|ref|XP_002190890.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Taeniopygia guttata]
Length = 342
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 78/115 (67%), Gaps = 14/115 (12%)
Query: 81 VHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSKDR 138
VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSKD+
Sbjct: 200 VHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSKDK 258
Query: 139 TNMQHRYIELFLNSSS---------PRGGVG-GSGSIGGFGGSGGGRLGGFGGSD 183
+MQHRYIELFLNS++ R G+ G GS+G G G GG+G D
Sbjct: 259 NHMQHRYIELFLNSTAGGGSGMGGYGRDGMDQGYGSVGRM-GMGSNYSGGYGTPD 312
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 10/95 (10%)
Query: 69 WVNESSGPSRHT-----VHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGE 119
W + +GP+ T V +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GE
Sbjct: 3 WSGKHNGPNDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQ-GRSTGE 61
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
A V FA+ E A A+ K + + HRYIE+F +S S
Sbjct: 62 AFVQFASKEIAENALGKHKERIGHRYIEIFKSSKS 96
>gi|449269002|gb|EMC79814.1| Heterogeneous nuclear ribonucleoprotein H3 [Columba livia]
Length = 343
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 78/115 (67%), Gaps = 14/115 (12%)
Query: 81 VHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSKDR 138
VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSKD+
Sbjct: 201 VHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSKDK 259
Query: 139 TNMQHRYIELFLNSSS---------PRGGVG-GSGSIGGFGGSGGGRLGGFGGSD 183
+MQHRYIELFLNS++ R G+ G GS+G G G GG+G D
Sbjct: 260 NHMQHRYIELFLNSTAGGGSGMGGYGRDGMDQGYGSVGRM-GMGSNYSGGYGTPD 313
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 10/95 (10%)
Query: 69 WVNESSGPSRHT-----VHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGE 119
W + +GP+ T V +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GE
Sbjct: 3 WTGKHNGPNDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQ-GRSTGE 61
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
A V FA+ E A A+ K + + HRYIE+F +S S
Sbjct: 62 AFVQFASKEIAENALGKHKERIGHRYIEIFKSSKS 96
>gi|60302824|ref|NP_001012610.1| heterogeneous nuclear ribonucleoprotein H3 [Gallus gallus]
gi|60099043|emb|CAH65352.1| hypothetical protein RCJMB04_21b18 [Gallus gallus]
Length = 342
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 78/115 (67%), Gaps = 14/115 (12%)
Query: 81 VHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSKDR 138
VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSKD+
Sbjct: 200 VHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSKDK 258
Query: 139 TNMQHRYIELFLNSSS---------PRGGVG-GSGSIGGFGGSGGGRLGGFGGSD 183
+MQHRYIELFLNS++ R G+ G GS+G G G GG+G D
Sbjct: 259 NHMQHRYIELFLNSTAGGGSGMGGYGRDGMDQGYGSVGRM-GMGNNYSGGYGTPD 312
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 10/95 (10%)
Query: 69 WVNESSGPSRHT-----VHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGE 119
W + +GP+ T V +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GE
Sbjct: 3 WTGKHNGPTDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQ-GRSTGE 61
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
A V FA+ E A A+ K + + HRYIE+F +S S
Sbjct: 62 AFVQFASKEIAENALGKHKERIGHRYIEIFKSSKS 96
>gi|224052108|ref|XP_002190951.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Taeniopygia guttata]
Length = 327
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 78/115 (67%), Gaps = 14/115 (12%)
Query: 81 VHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSKDR 138
VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSKD+
Sbjct: 185 VHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSKDK 243
Query: 139 TNMQHRYIELFLNSSS---------PRGGVG-GSGSIGGFGGSGGGRLGGFGGSD 183
+MQHRYIELFLNS++ R G+ G GS+G G G GG+G D
Sbjct: 244 NHMQHRYIELFLNSTAGGGSGMGGYGRDGMDQGYGSVGRM-GMGSNYSGGYGTPD 297
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 10/95 (10%)
Query: 69 WVNESSGPSRHT-----VHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGE 119
W + +GP+ T V +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GE
Sbjct: 3 WSGKHNGPNDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQ-GRSTGE 61
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
A V FA+ E A A+ K + + HRYIE+F +S S
Sbjct: 62 AFVQFASKEIAENALGKHKERIGHRYIEIFKSSKS 96
>gi|351712921|gb|EHB15840.1| Heterogeneous nuclear ribonucleoprotein H2 [Heterocephalus glaber]
Length = 416
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSSPRGG 158
+ NMQHRY+ELFLNS++ G
Sbjct: 349 KANMQHRYVELFLNSTAGTSG 369
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HR++E+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRHVEIFKSS 187
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTAGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|281427145|ref|NP_001094360.1| G-rich RNA sequence binding factor 1 [Rattus norvegicus]
Length = 479
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 65/83 (78%), Gaps = 2/83 (2%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAM 134
PS H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+ AM
Sbjct: 397 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 456
Query: 135 SKDRTNMQHRYIELFLNSSSPRG 157
KDR+++QHRYIELFLN S P+G
Sbjct: 457 LKDRSHVQHRYIELFLN-SCPKG 478
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 310 REEIGNRYIEIF 321
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQA 133
+ + +GLP+ DV FF + + IH+ +G+ G+A ++ + +D +A
Sbjct: 149 YLIRAQGLPWSCTVEDVLSFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKA 208
Query: 134 MSKDRTNMQHRYIELF 149
+ K R M RY+E++
Sbjct: 209 LEKHRMYMGQRYVEVY 224
>gi|74355899|gb|AAI03655.1| Grsf1 protein, partial [Rattus norvegicus]
Length = 142
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +++ + P + V+ + PS H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 33 AFESEKEIELPKEMSDKL--AEAVDFGAVPSLHFVHMRGLPFQANAQDIINFFAPLKPVR 90
Query: 107 VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y + G+ +GEADV F THEDA+ AM KDR+++QHRYIELFLN S P+G
Sbjct: 91 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 141
>gi|47086853|ref|NP_997754.1| heterogeneous nuclear ribonucleoprotein H1, like [Danio rerio]
gi|28278402|gb|AAH44161.1| Zgc:85960 [Danio rerio]
gi|182891430|gb|AAI64507.1| Zgc:85960 protein [Danio rerio]
Length = 407
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ PV V I +GR +GEADV+FATHEDA+ AMS D
Sbjct: 254 HCVHMRGLPYRATEPDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSND 313
Query: 138 RTNMQHRYIELFLNSSS 154
+ NMQHRY+ELFLNS++
Sbjct: 314 KANMQHRYVELFLNSTA 330
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 17/109 (15%)
Query: 69 WVNESSGPS------RHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 91 WVLKHTGPNCPETEGDGLVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 150
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS--------PRGGVG 160
A V FA+ + A +A+ K + + HRYIE+F +S + PR G+G
Sbjct: 151 AFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYEPPRKGMG 199
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V+ FF + IH+ GRPSGEA V+ + +D A+
Sbjct: 8 VVRVRGLPWSCSAEEVSRFFSGCKISSNGSAIHFTYTREGRPSGEAFVELESEDDLKIAV 67
Query: 135 SKDRTNMQHRYIELF 149
KDR +M HRY+E+F
Sbjct: 68 KKDRESMGHRYVEVF 82
>gi|94536671|ref|NP_001035439.1| uncharacterized protein LOC678601 [Danio rerio]
gi|92096562|gb|AAI15345.1| Zgc:136953 [Danio rerio]
gi|190338538|gb|AAI63730.1| Zgc:136953 [Danio rerio]
Length = 209
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLPFRA E DVA FF P+ PV V I NG+ +GEADV+F +HEDA+ AMSKD
Sbjct: 103 HFVHMRGLPFRATESDVAHFFGPLTPVRVHIDMGPNGKSTGEADVEFRSHEDAVSAMSKD 162
Query: 138 RTNMQHRYIELFLNSSS 154
+ +MQHRYIELFLNS+S
Sbjct: 163 KNHMQHRYIELFLNSTS 179
>gi|301768278|ref|XP_002919563.1| PREDICTED: g-rich sequence factor 1-like [Ailuropoda melanoleuca]
Length = 717
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 74/112 (66%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +++ + P + P V+ + S H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 608 AFESEKEIELPKEMSEKLPEA--VDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVR 665
Query: 107 VDIHYE-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y NG+ +GEADV F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 666 ITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 716
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 488 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 547
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 548 REEIGNRYIEIF 559
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQA 133
+ + +GLP+ DV +FF + + IH+ +G+ G+A ++ + +D +A
Sbjct: 387 YLIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 446
Query: 134 MSKDRTNMQHRYIELF 149
+ K R M RY+E++
Sbjct: 447 LEKHRMYMGQRYVEVY 462
>gi|149033731|gb|EDL88527.1| G-rich RNA sequence binding factor 1 [Rattus norvegicus]
Length = 281
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +++ + P + V+ + PS H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 172 AFESEKEIELPKEMSDKL--AEAVDFGAVPSLHFVHMRGLPFQANAQDIINFFAPLKPVR 229
Query: 107 VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y + G+ +GEADV F THEDA+ AM KDR+++QHRYIELFLN S P+G
Sbjct: 230 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 280
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 52 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 111
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 112 REEIGNRYIEIF 123
>gi|281347672|gb|EFB23256.1| hypothetical protein PANDA_008197 [Ailuropoda melanoleuca]
Length = 362
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 74/112 (66%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +++ + P + P V+ + S H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 253 AFESEKEIELPKEMSEKLPEA--VDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVR 310
Query: 107 VDIHYE-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y NG+ +GEADV F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 311 ITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 361
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
>gi|159163284|pdb|1WEZ|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleoprotein H'
Length = 102
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 16 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 75
Query: 138 RTNMQHRYIELFLNSSS 154
+ NMQHRY+ELFLNS++
Sbjct: 76 KANMQHRYVELFLNSTA 92
>gi|73975377|ref|XP_532402.2| PREDICTED: G-rich sequence factor 1 [Canis lupus familiaris]
Length = 372
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 74/112 (66%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +++ + P + P V+ + S H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 263 AFESEKEIELPKEMSEKLPEA--VDFGATSSLHFVHMRGLPFQANAQDIINFFAPLKPVR 320
Query: 107 VDIHYE-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y NG+ +GEADV F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 321 ITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 371
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 143 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 202
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 203 REEIGNRYIEIF 214
>gi|348534060|ref|XP_003454521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Oreochromis niloticus]
Length = 401
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 92/174 (52%), Gaps = 29/174 (16%)
Query: 7 GFGRPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFR---------------GGFNND 51
G RP PYDR G GG GP P RG R GFNN
Sbjct: 200 GAQRPGPYDRPMMSGPR---GGFFGPSPGRGATMMDNMRSGGGYGGGYSSFDNYNGFNNY 256
Query: 52 -----RWNDRPGGFAGPRPGGRWVNESSGP-----SRHTVHMRGLPFRANERDVADFFRP 101
+++R G G R G + S S H VHMRGLPFRA E D+A FF P
Sbjct: 257 CFGNGMFDERVRGERGGRVGSHGYSGQSDVGSGFHSGHFVHMRGLPFRATEGDIAKFFSP 316
Query: 102 VVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+ P+ + I NG+ +GEADV+F +HEDA+ AMSKD+ +MQHRYIELFLNS++
Sbjct: 317 LNPLRIHIDMAPNGKSTGEADVEFRSHEDAVAAMSKDKNHMQHRYIELFLNSTA 370
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPV-----HVDIHYENGRPSGEADVDFATHEDAMQA 133
+ V +RGLP+ + +VA FF V + + GRPSGEA ++ T ED A
Sbjct: 8 YVVRIRGLPWSCTQDEVASFFSDCDIVGKVNGVCFTYSKEGRPSGEAFIELKTAEDFKNA 67
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGV 159
++KDR M HRYIE+F ++ S V
Sbjct: 68 LAKDRKYMGHRYIEVFKSNRSEMDWV 93
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 11/103 (10%)
Query: 60 FAGPRPGGRWVNESSGPSRH------TVHMRGLPFRANERDVADFFR--PVVP--VHVDI 109
F R WV + SGP+ + + +RGLPF ++ ++ FF +VP + + +
Sbjct: 83 FKSNRSEMDWVLKRSGPADYDSCSGCMLRLRGLPFGCSKEEIVQFFSGLRIVPNGITLPV 142
Query: 110 HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
Y+ GR +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 143 DYQ-GRSTGEAFVQFASKEIAEKALGKHKERIGHRYIEIFKSS 184
>gi|311262314|ref|XP_003129120.1| PREDICTED: G-rich sequence factor 1-like [Sus scrofa]
Length = 479
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 74/112 (66%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +++ + P + P V+ + S H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 370 AFESEKEIELPKEMSEKLPEA--VDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVR 427
Query: 107 VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y + G+ +GEADV F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 428 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 478
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 310 REEIGNRYIEIF 321
Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQA 133
+ + +GLP+ DV FF + + IH+ +G+ G+A ++ + +D +A
Sbjct: 149 YLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 208
Query: 134 MSKDRTNMQHRYIELF 149
+ K R M RY+E++
Sbjct: 209 LEKHRMYMGQRYVEVY 224
>gi|351695486|gb|EHA98404.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 348
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 64/79 (81%), Gaps = 5/79 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPV--VPVHVDIHYENGRPSGEADVDFATHEDAMQAMS- 135
H VHMRGLP++A E D+ +FF P+ V VH++I NGR +GEADV+FAT+E+AM AMS
Sbjct: 220 HCVHMRGLPYKATENDIYNFFSPLNAVRVHIEIR-PNGRVTGEADVEFATNEEAMAAMSK 278
Query: 136 -KDRTNMQHRYIELFLNSS 153
KDRTN+QHRYIELFLNS+
Sbjct: 279 DKDRTNIQHRYIELFLNST 297
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLPF + ++ FF +VP + + + G+ +GEA V FA+ E A +A+ K
Sbjct: 45 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALRKH 104
Query: 138 RTNMQHRYIELFLNS 152
+ + HRYIE+F +S
Sbjct: 105 KERIGHRYIEVFKSS 119
>gi|213514986|ref|NP_001135185.1| Heterogeneous nuclear ribonucleoprotein H3 [Salmo salar]
gi|209149642|gb|ACI32984.1| Heterogeneous nuclear ribonucleoprotein H3 [Salmo salar]
Length = 204
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 62/75 (82%), Gaps = 1/75 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRT 139
VHMRGLPFRA E D+A+FF P+ PV V I + NG+ +GEADV+F +HEDA+ AMSKD+
Sbjct: 100 VHMRGLPFRATEGDIANFFSPLTPVRVHIDFGPNGKSTGEADVEFRSHEDAVSAMSKDKN 159
Query: 140 NMQHRYIELFLNSSS 154
+MQHRYIELFLNS++
Sbjct: 160 HMQHRYIELFLNSTA 174
>gi|327274272|ref|XP_003221902.1| PREDICTED: g-rich sequence factor 1-like [Anolis carolinensis]
Length = 485
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 69/91 (75%), Gaps = 2/91 (2%)
Query: 68 RWVNES-SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFA 125
R + ES S PS H VH+RGLPF+A +D+ +FF P+ PV + + Y +G+ +GEADV F
Sbjct: 390 RDLQESRSFPSLHFVHLRGLPFQATAQDIINFFAPLKPVRITMEYNSSGKATGEADVHFE 449
Query: 126 THEDAMQAMSKDRTNMQHRYIELFLNSSSPR 156
THEDA+ AM+K+R+++QHRYIELFLNSS R
Sbjct: 450 THEDAIAAMAKNRSHVQHRYIELFLNSSPSR 480
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ E D++DFF ++ + + R +GEA V FAT E A QA+ K
Sbjct: 254 VVRLRGLPYSCTEVDISDFFSGLSIIDITFVMDQRGRRKTGEAFVQFATPEMANQALLKH 313
Query: 138 RTNMQHRYIELF 149
+ + +RYIE+F
Sbjct: 314 KEEIGNRYIEIF 325
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 79 HTVHMRGLPFRANERDVADFF------RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
+ + +GLP+ E DV +FF V +H ++ +G+ G+A V+ + +D
Sbjct: 153 YLIRAQGLPYSCTEEDVLNFFAGSKIRNGVNGIHFLLN-RDGKRRGDALVELESEQDVHN 211
Query: 133 AMSKDRTNMQHRYIELF 149
A+ K R + RY+E+F
Sbjct: 212 ALEKHRRYLGQRYVEVF 228
>gi|351714741|gb|EHB17660.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 396
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 98/187 (52%), Gaps = 28/187 (14%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDR--- 52
+P PYDR G A R+ G +G + G G+RG GF D
Sbjct: 205 QPGPYDRP---GTAQRYIGIVKQAGLERMPSGAYSAGYRGYEEYSGLSDDYGFTTDLIGR 261
Query: 53 -WNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPV--VPVHVDI 109
+ G R G S + H VHMRGLP++A E D+ +FF P+ V VH++I
Sbjct: 262 DLSYCLSGMYDHRYGDSEFTVQS-TTGHCVHMRGLPYKATENDIYNFFSPLNAVRVHIEI 320
Query: 110 HYENGRPSGEADVDFATHEDAMQAMS--KDRTNMQHRYIELFLNSSS-PRGGVGGSGSIG 166
NGR +GEADV+FAT+E+AM AMS KDRTN+QHRYIELFLNS+ G S +
Sbjct: 321 R-PNGRVTGEADVEFATNEEAMAAMSKDKDRTNIQHRYIELFLNSTMGASNGAHSSQVLQ 379
Query: 167 GFGGSGG 173
G G S
Sbjct: 380 GMGVSAA 386
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
+ V +RGLP+ + DV +F V VH I+ GR SGEA V+ + ED
Sbjct: 10 YVVKLRGLPWSCSTEDVQNFLSDCTIRDGVAGVHF-IYTREGRQSGEAFVELESEEDVKT 68
Query: 133 AMSKDRTNMQHRYIELF 149
A+ KDR +M HRYIE+F
Sbjct: 69 ALKKDRESMGHRYIEVF 85
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F + WV + S P+ V + GL F + ++ FF +VP + +
Sbjct: 85 FKSHKTEMDWVLKHSSPNSTDTANDSFVRLWGLSFGCTKGEIVQFFSGLEIVPNGITLPV 144
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +G+A + FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 145 DPEGKFTGKAFLQFASQELAEKALRKHKEKIGHRYIEVFKSS 186
>gi|193643553|ref|XP_001946497.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Acyrthosiphon pisum]
Length = 518
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 65/84 (77%), Gaps = 3/84 (3%)
Query: 71 NESSGPSR--HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENG-RPSGEADVDFATH 127
N ++ PSR + VHMRGLPF+ANE D+A FF P+ PV + I + N RPSGEA+V+F
Sbjct: 335 NWNAPPSRPLYVVHMRGLPFKANEDDIATFFEPLEPVDIRILFNNNNRPSGEANVEFGNK 394
Query: 128 EDAMQAMSKDRTNMQHRYIELFLN 151
EDAM+AMSKD+T MQHRYIELF++
Sbjct: 395 EDAMRAMSKDKTYMQHRYIELFMD 418
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSR------HTVHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + +G + + V +RGLPF + + D+ FF+ + P + I
Sbjct: 133 FRSKRSEMEWVIKKTGSTLDSVLDDNCVRLRGLPFGSTKDDIVQFFQGLEMTPDGITIAT 192
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ GR +GEA V F E+A +A+ K + + HRYIE+F +S
Sbjct: 193 DFTGRSTGEAFVQFVDRENAEKALQKHKEKIGHRYIEIFRSS 234
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRPV---------VPVHVDIHYENGRPSGEADVDFATHEDA 130
V MRGLP+ A D+ F + VH+ + E GRPSGEA V+ + ED
Sbjct: 56 VVKMRGLPWSATADDIIKFLSILGEAKVKDGAAGVHLTMARE-GRPSGEAYVEMESEEDL 114
Query: 131 MQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
A+ KDR +M +RYIE+F + S V
Sbjct: 115 KAALKKDREHMGNRYIEVFRSKRSEMEWV 143
>gi|345325737|ref|XP_003430953.1| PREDICTED: G-rich sequence factor 1-like [Ornithorhynchus anatinus]
Length = 224
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 66/85 (77%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ PS H V MRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F +HEDA+
Sbjct: 140 TAPSFHFVRMRGLPFQANAQDIVNFFSPLKPVRITMEYSSSGKATGEADVHFESHEDAVA 199
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM+KDR+++QHRYIELFLN S P+G
Sbjct: 200 AMAKDRSHVQHRYIELFLN-SCPKG 223
>gi|410957462|ref|XP_003985346.1| PREDICTED: G-rich sequence factor 1 [Felis catus]
Length = 361
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 74/112 (66%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +++ + P + P V+ + S H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 252 AFESEKEIELPKEMSEKLPEA--VDFGTPSSLHFVHMRGLPFQANAQDIINFFAPLKPVR 309
Query: 107 VDIHYE-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y NG+ +GEADV F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 310 ITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 360
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQ 195
R + +RYIE+F S R V +G G ++P FE N+
Sbjct: 193 REEIGNRYIEIF---PSRRNEV--RTHVGSHKGKKMTSPTAKYITEPEMVFEEHEVNE 245
>gi|118151012|ref|NP_001071439.1| G-rich sequence factor 1 [Bos taurus]
gi|117306552|gb|AAI26704.1| G-rich RNA sequence binding factor 1 [Bos taurus]
Length = 481
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 74/112 (66%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +++ + P + P V+ + S H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 372 AFESEKEIELPKEMSEKIPEA--VDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVR 429
Query: 107 VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y + G+ +GEADV F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 430 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 480
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 252 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 311
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 312 REEIGNRYIEIF 323
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQA 133
+ + +GLP+ DV FF + + IH+ +G+ G+A ++ + +D +A
Sbjct: 151 YLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 210
Query: 134 MSKDRTNMQHRYIELF 149
+ K R M RY+E++
Sbjct: 211 LEKHRMYMGQRYVEVY 226
>gi|296196376|ref|XP_002745793.1| PREDICTED: G-rich sequence factor 1 [Callithrix jacchus]
Length = 479
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ P H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 395 TTPCLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 454
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 455 AMLKDRSHVHHRYIELFLN-SCPKG 478
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 310 REEIGNRYIEIF 321
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQA 133
+ + +GLP+ DV +FF + + IH+ +G+ G+A ++ + +D +A
Sbjct: 149 YLIRAQGLPWSCTIEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 208
Query: 134 MSKDRTNMQHRYIELF 149
+ K R M RY+E++
Sbjct: 209 LEKHRMYMGQRYVEVY 224
>gi|334321772|ref|XP_001372905.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Monodelphis domestica]
Length = 362
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 96/196 (48%), Gaps = 23/196 (11%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFR---GGFNNDRWNDRPG---GFAGP 63
R PYDR G R SG G +G PR R +R ND P +
Sbjct: 136 RLGPYDRQ---GPELRLKTVSGEGSDKGMRPRVFERLNGSYICKNRSNDDPSIDFNISTR 192
Query: 64 R-PGGRW--VNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGE 119
R P R+ + H VHMRGLP++A D+ FF P+ P+ V I E+G+ +GE
Sbjct: 193 RIPNNRFGDFIFHNATCHHWVHMRGLPYKATVNDIYHFFSPLCPLRVHIEIGEDGKATGE 252
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGF 179
ADVDF THEDA+ AM K++T MQHRYIELFL S++ G + F L
Sbjct: 253 ADVDFVTHEDAVAAMVKEKTYMQHRYIELFLYSTA-------KGRMDAFTSK---VLKAR 302
Query: 180 GGSDPSSPFERRNPNQ 195
+PFER+ PN
Sbjct: 303 ENQLRGNPFERQQPNM 318
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 81 VHMRGLPFRANERDVADFF--RPVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKD 137
+ +RGLPF N+ + FF VP + + + G+ +G A V FA+ E A A+ K
Sbjct: 43 LCIRGLPFGCNKETIRHFFSGLETVPSGIILPVDFQGKSTGTALVQFASQEAAEIAIRKH 102
Query: 138 RTNMQHRYIELFLNSSSP 155
+ + RY+E N S P
Sbjct: 103 KGRPEPRYLENLKNGSVP 120
>gi|355693777|gb|AER99447.1| G-rich RNA sequence binding factor 1 [Mustela putorius furo]
Length = 360
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 73/112 (65%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +++ + P + P + + S H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 252 AFESEKEIELPKEMSEKLPEA--ADFGTASSLHFVHMRGLPFQANAQDIINFFAPLKPVR 309
Query: 107 VDIHYE-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y NG+ +GEADV F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 310 ITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 360
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 132 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 191
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 192 REEIGNRYIEIF 203
>gi|426231834|ref|XP_004009942.1| PREDICTED: G-rich sequence factor 1 [Ovis aries]
Length = 362
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 74/112 (66%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +++ + P + P V+ + S H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 253 AFESEKEIESPKEMSEKLPEA--VDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVR 310
Query: 107 VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y + G+ +GEADV F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 311 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 361
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 192
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
>gi|403281341|ref|XP_003945266.1| PREDICTED: LOW QUALITY PROTEIN: G-rich sequence factor 1 [Saimiri
boliviensis boliviensis]
Length = 439
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ P H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 355 TTPCLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 414
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 415 AMLKDRSHVHHRYIELFLN-SCPKG 438
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 252 VVRLRGLPYSCNEKDIIDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 311
Query: 138 RTNMQHRYIELFL 150
R + +R ++ L
Sbjct: 312 REEIGNRXVKQIL 324
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQ 132
+ + +GLP+ DV +FF +H ++ +G+ G+A ++ + +D +
Sbjct: 151 YLIRAQGLPWSCTIEDVLNFFSDCRIRNGQNGIHFLLN-RDGKRRGDALIEMESEQDVQK 209
Query: 133 AMSKDRTNMQHRYIELF 149
A+ K R M RY+E++
Sbjct: 210 ALEKHRLYMGQRYVEVY 226
>gi|440905001|gb|ELR55451.1| G-rich sequence factor 1, partial [Bos grunniens mutus]
Length = 362
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 74/112 (66%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +++ + P + P V+ + S H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 253 AFESEKEIELPKEMSEKIPEA--VDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVR 310
Query: 107 VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y + G+ +GEADV F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 311 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 361
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 192
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
>gi|151555768|gb|AAI49234.1| GRSF1 protein [Bos taurus]
Length = 362
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 74/112 (66%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +++ + P + P V+ + S H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 253 AFESEKEIELPKEMSEKIPEA--VDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVR 310
Query: 107 VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y + G+ +GEADV F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 311 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 361
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 192
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
>gi|444727895|gb|ELW68371.1| Heterogeneous nuclear ribonucleoprotein H2 [Tupaia chinensis]
Length = 236
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 78/119 (65%), Gaps = 11/119 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF + P+ V I +GR +GEADV+F THEDA+ AM+KD
Sbjct: 88 HCVHMRGLPYRATENDIYNFFLLLNPMRVHIEIGPDGRVTGEADVEFDTHEDAVAAMAKD 147
Query: 138 RTNMQHRYIELFLNSSSPRGG---------VGGSGSIGGFGGSGGGR-LGGFGGSDPSS 186
+ NMQHRY+ELFLNS++ G + + + G GG+ G + +GG G S+ SS
Sbjct: 148 KVNMQHRYVELFLNSTAGTSGGAYDHSYVELYLNSTAGASGGAYGSQMMGGMGLSNQSS 206
>gi|410227596|gb|JAA11017.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410268188|gb|JAA22060.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410306352|gb|JAA31776.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410306354|gb|JAA31777.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410360388|gb|JAA44703.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410360390|gb|JAA44704.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
Length = 481
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 397 TASSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 456
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 457 AMLKDRSHVHHRYIELFLN-SCPKG 480
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 252 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 311
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 312 REEIGNRYIEIF 323
Score = 36.2 bits (82), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQAMS 135
+ +GLP+ DV +FF + + IH+ +G+ G+A ++ + +D +A+
Sbjct: 153 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 212
Query: 136 KDRTNMQHRYIELF 149
K R M RY+E++
Sbjct: 213 KHRMYMGQRYVEVY 226
>gi|34533956|dbj|BAC86863.1| unnamed protein product [Homo sapiens]
Length = 447
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 363 TTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 422
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 423 AMLKDRSHVHHRYIELFLN-SCPKG 446
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 218 VVRLRGLPYSCNEEDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 277
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGG----SDPSSPFERRNP 193
R + +RYIE+F S R V G G ++ F ++P FE
Sbjct: 278 REEIGNRYIEIF---PSRRNEVRTH-----VGSYKGKKIASFPTAKYITEPEMVFEEHEV 329
Query: 194 NQ 195
N+
Sbjct: 330 NE 331
>gi|193784859|dbj|BAG54012.1| unnamed protein product [Homo sapiens]
Length = 459
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 375 TTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 434
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 435 AMLKDRSHVHHRYIELFLN-SCPKG 458
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 230 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 289
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 290 REEIGNRYIEIF 301
>gi|149193321|ref|NP_002083.3| G-rich sequence factor 1 isoform 1 [Homo sapiens]
Length = 480
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 396 TTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 455
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 456 AMLKDRSHVHHRYIELFLN-SCPKG 479
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 310
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 311 REEIGNRYIEIF 322
>gi|517196|gb|AAC95399.1| G-rich sequence factor-1 [Homo sapiens]
Length = 424
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 340 TTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 399
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 400 AMLKDRSHVHHRYIELFLN-SCPKG 423
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 14/131 (10%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 195 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 254
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGG----SDPSSPFERRNP 193
R + +RYIE+F S R V G G ++ F ++P FE
Sbjct: 255 REEIGNRYIEIF---PSRRNEVRTH-----VGSYKGKKIASFPTAKYITEPEMVFEEHEV 306
Query: 194 NQAYVENTALS 204
N+ + TA
Sbjct: 307 NEVFQPMTAFE 317
>gi|215274142|sp|Q12849.3|GRSF1_HUMAN RecName: Full=G-rich sequence factor 1; Short=GRSF-1
Length = 480
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 396 TTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 455
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 456 AMLKDRSHVHHRYIELFLN-SCPKG 479
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 310
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 311 REEIGNRYIEIF 322
>gi|355749346|gb|EHH53745.1| hypothetical protein EGM_14439, partial [Macaca fascicularis]
Length = 362
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 65/85 (76%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S+H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 278 TTSSQHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 337
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 338 AMLKDRSHVHHRYIELFLN-SCPKG 361
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
>gi|380812104|gb|AFE77927.1| G-rich sequence factor 1 isoform 1 [Macaca mulatta]
gi|380812106|gb|AFE77928.1| G-rich sequence factor 1 isoform 1 [Macaca mulatta]
Length = 479
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 395 TTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 454
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 455 AMLKDRSHVHHRYIELFLN-SCPKG 478
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 310 REEIGNRYIEIF 321
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQA 133
+ + +GLP+ DV +FF + + IH+ +G+ G+A ++ + +D +A
Sbjct: 149 YLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 208
Query: 134 MSKDRTNMQHRYIELF 149
+ K R M RY+E++
Sbjct: 209 LEKHRMYMGQRYVEVY 224
>gi|193786243|dbj|BAG51526.1| unnamed protein product [Homo sapiens]
Length = 412
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 328 TTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 387
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 388 AMLKDRSHVHHRYIELFLN-SCPKG 411
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 183 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 242
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGG----SDPSSPFERRNP 193
R + +RYIE+F S R V G G ++ F ++P FE
Sbjct: 243 REEIGNRYIEIF---PSRRNEVRTH-----VGSYKGKKIASFPTAKYITEPEMVFEEHEV 294
Query: 194 NQ 195
N+
Sbjct: 295 NE 296
>gi|388452478|ref|NP_001253931.1| G-rich sequence factor 1 [Macaca mulatta]
gi|383417775|gb|AFH32101.1| G-rich sequence factor 1 isoform 1 [Macaca mulatta]
Length = 479
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 395 TTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 454
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 455 AMLKDRSHVHHRYIELFLN-SCPKG 478
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 310 REEIGNRYIEIF 321
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQA 133
+ + +GLP+ DV +FF + + IH+ +G+ G+A ++ + +D +A
Sbjct: 149 YLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 208
Query: 134 MSKDRTNMQHRYIELF 149
+ K R M RY+E++
Sbjct: 209 LEKHRMYMGQRYVEVY 224
>gi|21748975|dbj|BAC03513.1| unnamed protein product [Homo sapiens]
Length = 415
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 331 TTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 390
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 391 AMLKDRSHVHHRYIELFLN-SCPKG 414
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 186 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 245
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGG----SDPSSPFERRNP 193
R + +RYIE+F S R V G G ++ F ++P FE
Sbjct: 246 REEIGNRYIEIF---PSRRNEVRTH-----VGSYKGKKIASFPTAKYITEPEMVFEEHEV 297
Query: 194 NQ 195
N+
Sbjct: 298 NE 299
>gi|395735012|ref|XP_002814888.2| PREDICTED: G-rich sequence factor 1 [Pongo abelii]
Length = 459
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 63/82 (76%), Gaps = 2/82 (2%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMS 135
S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+ AM
Sbjct: 378 SLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMH 437
Query: 136 KDRTNMQHRYIELFLNSSSPRG 157
KDR+++ HRYIELFLN S P+G
Sbjct: 438 KDRSHVYHRYIELFLN-SCPKG 458
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADV 122
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V
Sbjct: 252 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYV 296
Score = 36.2 bits (82), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 81 VHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +GLP+ DV +FF +H ++ +G+ G+A ++ + +D +A+
Sbjct: 153 IRAQGLPWSCTVEDVLNFFSDCRIRKGENGIHFLLN-RDGKRRGDALIEMESEQDVQKAL 211
Query: 135 SKDRTNMQHRYIELF 149
K R M RY+E++
Sbjct: 212 EKHRMYMGQRYVEVY 226
>gi|395530818|ref|XP_003767484.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Sarcophilus harrisii]
Length = 344
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQ 132
+ H VHMRGLP++A D+ FF P+ P+ V I ++G+ +GEADVDF THEDA+
Sbjct: 184 NATCHHWVHMRGLPYKATVNDIYHFFSPLCPLRVHIEIGQDGKATGEADVDFVTHEDAVA 243
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRGGV 159
AM+K++T MQHRYIELFL S++ RGG+
Sbjct: 244 AMAKEKTYMQHRYIELFLYSTA-RGGM 269
>gi|426344574|ref|XP_004038836.1| PREDICTED: G-rich sequence factor 1 [Gorilla gorilla gorilla]
Length = 362
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 278 TTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 337
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 338 AMLKDRSHIHHRYIELFLN-SCPKG 361
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGG----SDPSSPFERRNP 193
R + +RYIE+F S R V G G ++ F ++P FE
Sbjct: 193 REEIGNRYIEIF---PSRRNEVRTH-----VGSYKGKKIASFPTAKYITEPEMVFEEHEV 244
Query: 194 NQ 195
N+
Sbjct: 245 NE 246
>gi|349603147|gb|AEP99067.1| G-rich sequence factor 1-like protein, partial [Equus caballus]
Length = 361
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 277 TASSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVA 336
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 337 AMLKDRSHVHHRYIELFLN-SCPKG 360
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 132 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 191
Query: 138 RTNMQHRYIELF-LNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQ 195
R + +RYIE+F + R VG G L ++P FE N+
Sbjct: 192 REEIGNRYIEIFPSRRNEVRTHVGSHK-----GKKMASSLTAKYITEPEMVFEEHEVNE 245
>gi|338723562|ref|XP_001489151.2| PREDICTED: g-rich sequence factor 1 [Equus caballus]
Length = 362
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 278 TASSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVA 337
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 338 AMLKDRSHVHHRYIELFLN-SCPKG 361
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 192
Query: 138 RTNMQHRYIELF-LNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQ 195
R + +RYIE+F + R VG G L ++P FE N+
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHK-----GKKMASSLTAKYITEPEMVFEEHEVNE 246
>gi|221042436|dbj|BAH12895.1| unnamed protein product [Homo sapiens]
Length = 393
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 309 TTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 368
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 369 AMLKDRSHVHHRYIELFLN-SCPKG 392
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 164 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 223
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGG----SDPSSPFERRNP 193
R + +RYIE+F S R V G G ++ F ++P FE
Sbjct: 224 REEIGNRYIEIF---PSRRNEVRTH-----VGSYKGKKIASFPTAKYITEPEMVFEEHEV 275
Query: 194 NQ 195
N+
Sbjct: 276 NE 277
>gi|90084329|dbj|BAE91006.1| unnamed protein product [Macaca fascicularis]
Length = 318
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 234 TTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 293
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 294 AMLKDRSHVHHRYIELFLN-SCPKG 317
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 148
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 149 REEIGNRYIEIF 160
>gi|149193319|ref|NP_001091947.1| G-rich sequence factor 1 isoform 2 [Homo sapiens]
gi|119626036|gb|EAX05631.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Homo sapiens]
gi|119626037|gb|EAX05632.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Homo sapiens]
gi|119626038|gb|EAX05633.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Homo sapiens]
gi|193786999|dbj|BAG51822.1| unnamed protein product [Homo sapiens]
gi|193787731|dbj|BAG52934.1| unnamed protein product [Homo sapiens]
gi|193788237|dbj|BAG53131.1| unnamed protein product [Homo sapiens]
gi|193788520|dbj|BAG53414.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 234 TTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 293
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 294 AMLKDRSHVHHRYIELFLN-SCPKG 317
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 148
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGF----GGSDPSSPFERRNP 193
R + +RYIE+F S R V G G ++ F ++P FE
Sbjct: 149 REEIGNRYIEIF---PSRRNEVRTH-----VGSYKGKKIASFPTAKYITEPEMVFEEHEV 200
Query: 194 NQ 195
N+
Sbjct: 201 NE 202
>gi|397475207|ref|XP_003809035.1| PREDICTED: G-rich sequence factor 1 [Pan paniscus]
Length = 362
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 278 TTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 337
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 338 AMLKDRSHVHHRYIELFLN-SCPKG 361
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGG----SDPSSPFERRNP 193
R + +RYIE+F S R V G G ++ F ++P FE
Sbjct: 193 REEIGNRYIEIF---PSRRNEVRTH-----VGSYKGKKIASFPTAKYITEPEMVFEEHEV 244
Query: 194 NQ 195
N+
Sbjct: 245 NE 246
>gi|221040122|dbj|BAH11824.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 278 TTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 337
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 338 AMLKDRSHVHHRYIELFLN-SCPKG 361
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGG----SDPSSPFERRNP 193
R + +RYIE+F S R V G G ++ F ++P FE
Sbjct: 193 REEIGNRYIEIF---PSRRNEVRTH-----VGSYKGKKIASFPTAKYITEPEMVFEEHEV 244
Query: 194 NQ 195
N+
Sbjct: 245 NE 246
>gi|355687360|gb|EHH25944.1| G-rich sequence factor 1, partial [Macaca mulatta]
Length = 362
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 278 TTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 337
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 338 AMLKDRSHVHHRYIELFLN-SCPKG 361
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
>gi|221041252|dbj|BAH12303.1| unnamed protein product [Homo sapiens]
Length = 448
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 364 TTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 423
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 424 AMLKDRSHVHHRYIELFLN-SCPKG 447
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 14/131 (10%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 219 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 278
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGG----SDPSSPFERRNP 193
R + +RYIE+F S R V G G ++ F ++P FE
Sbjct: 279 REEIGNRYIEIF---PSRRNEVRTH-----VGSYKGKKIASFPTAKYITEPEMVFEEHEV 330
Query: 194 NQAYVENTALS 204
N+ TA
Sbjct: 331 NEDIQPMTAFE 341
>gi|441626116|ref|XP_003265953.2| PREDICTED: G-rich sequence factor 1 [Nomascus leucogenys]
Length = 539
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 63/82 (76%), Gaps = 2/82 (2%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMS 135
S H VH+RGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+ AM
Sbjct: 458 SLHFVHVRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAML 517
Query: 136 KDRTNMQHRYIELFLNSSSPRG 157
KDR+++ HRYIELFLN S P+G
Sbjct: 518 KDRSHVHHRYIELFLN-SCPKG 538
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 310 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 369
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 370 REEIGNRYIEIF 381
>gi|395741721|ref|XP_003780739.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H3 [Pongo abelii]
Length = 346
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 60/78 (76%), Gaps = 4/78 (5%)
Query: 79 HTVHMRGLPFRANERDVADFFRPV--VPVHVDIHYENGRPSGEADVDFATHEDAMQAM-S 135
H VHMRGLPFRA E D+A+FF P+ VH+DI +GR +GEADV+F THEDA+ AM
Sbjct: 203 HFVHMRGLPFRATENDIANFFSPLNQYEVHIDIG-ADGRATGEADVEFVTHEDAVAAMFX 261
Query: 136 KDRTNMQHRYIELFLNSS 153
+ + NMQHRYIELFLNS+
Sbjct: 262 RIKINMQHRYIELFLNST 279
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|198417021|ref|XP_002122500.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H2
(hnRNP H2) (Heterogeneous nuclear ribonucleoprotein H)
(hnRNP H) (FTP-3) [Ciona intestinalis]
Length = 420
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Query: 66 GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDF 124
G + E + PS+ V MRGLPF+ E+DV +FF P+VPV V+I Y ++GR +GE V F
Sbjct: 304 GEEFYEEEASPSQFVVRMRGLPFKCQEQDVFNFFSPLVPVRVNIEYSDDGRVTGEGTVFF 363
Query: 125 ATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A+++DA AM K++ +QHRYIELFL S
Sbjct: 364 ASYQDAQAAMQKNKECIQHRYIELFLRS 391
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 9/107 (8%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFF--RPVVPVHVDIHYE-NGRPSGEADVDFATHED 129
SS + V +RGLPF+ ++ +VA FF +VP + + + NGR +GEA V+F + E
Sbjct: 100 SSAQADVFVRLRGLPFQCSKEEVAQFFSGLEIVPNGITLPLDDNGRSTGEAYVEFGSPES 159
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIG----GFGGSG 172
A +A++K + + HRYIE+F SS R + G GFG G
Sbjct: 160 AEKALTKHKEKIGHRYIEIF--KSSKRELMESQGEYMDDERGFGSRG 204
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 77 SRHTVHMRGLPFRANERDVADFFR-PVVPVHVDI---HYENGRPSGEADVDFATHEDAMQ 132
R+ V +RGLP+ A E +V F VV I + ++ RPSGEA V+ + +
Sbjct: 4 ERYVVRLRGLPWAATEAEVIKFLNVEVVGGEAGIRRTYTDDQRPSGEAFVEVTSQKSLQT 63
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRGGVGG 161
KD + RYIE+F +S V G
Sbjct: 64 CFEKDHQLIGKRYIEVFESSVKEMEYVLG 92
>gi|403301377|ref|XP_003941367.1| PREDICTED: G-rich sequence factor 1-like [Saimiri boliviensis
boliviensis]
Length = 291
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 46 GGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPV 105
F +++ + P P V+ + P + VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 174 AAFESEKEIELPQEMPEKLPEA--VDFGTTPCLYFVHMRGLPFQANAQDIINFFAPLKPV 231
Query: 106 HVDIHYENGRP-SGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGS 164
+ + Y + R +GEA+V F HEDA+ M KD +++ HRYIELFL SS P+G + GS
Sbjct: 232 RITMEYSSSRKATGEAEVHFEIHEDAVAVMLKDWSHVHHRYIELFL-SSCPKGKLDFRGS 290
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 84 RGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNM 141
RGLP+ N++D+ DFF V + + Y + +GEA V F E A QA+ K R +
Sbjct: 59 RGLPYSCNKKDIVDFFAGLNTVAITFVMDYRGRQKTGEAYVQFEEPEMANQALLKHREEI 118
Query: 142 QHRYIELF 149
+RYIE+F
Sbjct: 119 GNRYIEIF 126
>gi|351707744|gb|EHB10663.1| G-rich sequence factor 1 [Heterocephalus glaber]
Length = 455
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 7/114 (6%)
Query: 48 FNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVAD---FFRPVVP 104
F N++ + P P + + PS H VHMRGLPF+AN +D+ + FF P+ P
Sbjct: 344 FENEKEIELPKEVLEKVPEA--ADLGAMPSLHVVHMRGLPFQANAQDIINVCAFFMPLRP 401
Query: 105 VHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
V + + Y + G+ +GEA V F +HEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 402 VRITMEYSSSGKATGEAHVHFGSHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 454
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 32/102 (31%)
Query: 80 TVHMRGLPFRANERDVADFF--------------------------------RPVVPVHV 107
V +RGLP+ +E+D+ DFF +V +
Sbjct: 193 VVRLRGLPYSCSEKDIVDFFAGAQQFDHIWGITSPMSSFLIVLLYLRSVPTGLNIVDITF 252
Query: 108 DIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+ Y R +GEA V F E A QA+ K R + +RYIE+F
Sbjct: 253 VMDYRGRRKTGEAYVQFEEPEMASQALMKHREEIGNRYIEIF 294
>gi|291389582|ref|XP_002711385.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Oryctolagus
cuniculus]
Length = 415
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H V MRGLP++A E + +FF P+ PV V I + R +GEADV+FATHE A+ AMSKD
Sbjct: 289 HCVRMRGLPYKATENHIYNFFSPLNPVRVHIEIGPDERVTGEADVEFATHEGAVAAMSKD 348
Query: 138 RTNMQHRYIELFLNSSS 154
R NMQHR IELFLNS++
Sbjct: 349 RANMQHRCIELFLNSTT 365
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVP--VHVDI 109
F R WV + SGP+ V +RGLPF + ++ FF +VP + + +
Sbjct: 86 FKSHRTELDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 110 HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
E+ + +GEA V FA+ E A +A+ K + + HR IE+F +S
Sbjct: 146 DSED-KITGEAFVQFASQEVAEKALGKHKERIGHRSIEVFKSS 187
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F VH I+ GR SGEA V+ + +D A
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGATGVHF-IYAREGRQSGEAFVELESEDDVKMA 70
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR + H YI++F
Sbjct: 71 LKKDRESTGHPYIKVF 86
>gi|391341907|ref|XP_003745268.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Metaseiulus occidentalis]
Length = 503
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 82/150 (54%), Gaps = 31/150 (20%)
Query: 9 GRPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGGFNNDRWNDRPGGFAGPRPGGR 68
GRP PYDR G GP P R G+ G+++ + GGR
Sbjct: 220 GRPGPYDRM----------MGRGPPPRRDE----GYSTGYDDYGY------------GGR 253
Query: 69 WVNESSGPSR----HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENG-RPSGEADVD 123
+SSG S H VHMRG+P++A + DV DFF P+ PV V YE G RPSGE DV+
Sbjct: 254 RAGKSSGASYSGQGHFVHMRGIPYKATDSDVYDFFAPLRPVSVQFIYEAGGRPSGECDVE 313
Query: 124 FATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
F++H DA AM+K+ +M RY+ELFL S+
Sbjct: 314 FSSHRDAQDAMAKNNAHMGTRYVELFLKSN 343
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP++A E DV FF P+ P V ++ GRPSGE DV+FA+H DA +AM ++
Sbjct: 402 HFVHMRGLPYKACEDDVFQFFDPIRPASVRFTFDATGRPSGECDVEFASHRDAAEAMERN 461
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGF 168
+M +RY+ELF+ SS+ G + F
Sbjct: 462 NAHMGNRYVELFMKSSAQNKAFGNGAACHDF 492
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 60 FAGPRPGGRWVNESSGPSRH---TVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-N 113
F R W + S + V +RG+PF ++ ++A+FF +VP + I + N
Sbjct: 84 FRAKRAEMEWCMKKSSSNTLDEGIVRLRGIPFGCSKEEIANFFSGLEIVPNGIVIPVDFN 143
Query: 114 GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
GR +G+A V FA+ E A +A+ K + + HRYIE+F
Sbjct: 144 GRTAGDAYVQFASKEAAEKALEKHKERIGHRYIEIF 179
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPV---HVDIHYE---NGRPSGEADVDFAT 126
S G + V +RG+P+ + DV +F V V IH+ +GR SGEA V+ +
Sbjct: 2 SDGEADTIVRLRGMPWSSTNDDVLNFLGSDVHVLNGKDGIHFTYTRDGRASGEAYVELES 61
Query: 127 HEDAMQAMSKDRTNMQHRYIELF 149
D A+ KD NM +RYIE+F
Sbjct: 62 EPDVENALKKDNENMGNRYIEVF 84
>gi|326923399|ref|XP_003207924.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Meleagris gallopavo]
Length = 323
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 72/109 (66%), Gaps = 14/109 (12%)
Query: 87 PFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHR 144
PFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSKD+ +MQHR
Sbjct: 187 PFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSKDKNHMQHR 245
Query: 145 YIELFLNSSS---------PRGGVG-GSGSIGGFGGSGGGRLGGFGGSD 183
YIELFLNS++ R G+ G GS+G G G GG+G D
Sbjct: 246 YIELFLNSTAGGGSGMGGYGRDGMDQGYGSVGRM-GMGNNYSGGYGTPD 293
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 10/95 (10%)
Query: 69 WVNESSGPSRHT-----VHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGE 119
W + +GP+ T V +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GE
Sbjct: 3 WSGKHNGPTDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQ-GRSTGE 61
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
A V FA+ E A A+ K + + HRYIE+F +S S
Sbjct: 62 AFVQFASKEIAENALGKHKERIGHRYIEIFKSSKS 96
>gi|395737930|ref|XP_003777005.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H2-like [Pongo abelii]
Length = 596
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 94/172 (54%), Gaps = 26/172 (15%)
Query: 11 PAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRG-----------GFNNDRW----ND 55
P P DR G N G G+G +R GP GG+R GF +DR+ N
Sbjct: 192 PGPSDRPGAGRGYNSIGRGAGFERMRQGPYGGGYRDYDDYCGCNDGYGFRSDRFGKDCNY 251
Query: 56 RPGGFAGPRPG--GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN 113
G + R G G ++G H VH RGLP+RA ++ +F+ P+ HV +H E
Sbjct: 252 CFSGMSDHRXGDSGSSFQSTTG---HCVHTRGLPYRAT-KNXYNFYSPLN--HVRVHIEI 305
Query: 114 G---RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS 162
G R +G ADV+FA H+DA+ AM+KD+ NMQHRY+E+FLN++ G GG+
Sbjct: 306 GPDDRVTGRADVEFAAHKDAVVAMAKDKANMQHRYMEIFLNAAGTTGASGGA 357
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLPF + ++ FF +VP + + + GR +GEA V A+ E A A+ K
Sbjct: 99 VWLRGLPFGCXKEEIVHFFSGLEIVPNGITLXVDFQGRSTGEAFVPLASQEIAETALKKH 158
Query: 138 RTNMQHRYIEL 148
R + HRYIE+
Sbjct: 159 RERIGHRYIEI 169
>gi|432960846|ref|XP_004086494.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Oryzias
latipes]
Length = 370
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDA 130
+SS + H +HMRGLPF+A+ D+ FF P V + I +GR SGEADV F+ H DA
Sbjct: 282 QSSEANSHFIHMRGLPFQASGEDIVKFFSPYVVSKIMIECRPDGRTSGEADVYFSCHRDA 341
Query: 131 MQAMSKDRTNMQHRYIELFLNSS 153
+ AMS+DRTNM HRYIELFLNS+
Sbjct: 342 VAAMSRDRTNMGHRYIELFLNSA 364
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN---GRPSGEADVDFATHEDAMQAMSK 136
V +RGLPF + D+ FF + V I GR SGEA V F + E A +A+ K
Sbjct: 170 VVMLRGLPFSCTQDDILLFFSGLDVVENGITMVTDGRGRNSGEAFVQFTSQEVAGKALQK 229
Query: 137 DRTNMQHRYIELFLNSSS 154
R M HRY+E+F + SS
Sbjct: 230 HRELMGHRYVEVFPSRSS 247
Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ ++ FF VH+ + GRPSG A ++ ED +A
Sbjct: 73 IVQVRGLPWSCTVHELLHFFSDCRIRDGERGVHLTLD-RLGRPSGRAFIEMEHEEDVSKA 131
Query: 134 MSKDRTNMQHRYIEL 148
+ K R + RY+E+
Sbjct: 132 LEKHRQYLGPRYVEV 146
>gi|260834915|ref|XP_002612455.1| hypothetical protein BRAFLDRAFT_136434 [Branchiostoma floridae]
gi|229297832|gb|EEN68464.1| hypothetical protein BRAFLDRAFT_136434 [Branchiostoma floridae]
Length = 411
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 62/98 (63%), Gaps = 22/98 (22%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLPF+A D+ FF+P+VP+ V IHY + R +GEADV+FA+H+DA+ AM+KD
Sbjct: 278 HFVHMRGLPFKAASEDIEQFFQPLVPMKVQIHYGPDKRATGEADVEFASHDDAVAAMAKD 337
Query: 138 RTNM---------------------QHRYIELFLNSSS 154
+ NM +HRYIELFL+S +
Sbjct: 338 KANMRKWKCLSCDNHSGINGLFSFPEHRYIELFLDSEA 375
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Query: 68 RWVNESSGPSRH---TVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEA 120
WV + SG + V +RGLPF ++ ++A FF +VP + + Y+ GR +GEA
Sbjct: 87 EWVVKHSGQDQVNDGIVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQ-GRSTGEA 145
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
V F + + A +A+ K + + HRYIE+F +S
Sbjct: 146 FVQFTSQDIAEKALGKHKEKIGHRYIEIFKSS 177
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD-----IHY---ENGRPSGEADVDFATHEDA 130
+ V MRGLP+ A +V +F V IH+ + GRPSGEA V+ T ED
Sbjct: 2 YVVRMRGLPWSATCEEVKNFLTSE-GCKVKGGDGGIHFTFSKEGRPSGEAFVEVETSEDF 60
Query: 131 MQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
+A++K +M HRYIE+F + S V
Sbjct: 61 EKALAKHNQHMGHRYIEVFRSKVSEMEWV 89
>gi|313244027|emb|CBY14897.1| unnamed protein product [Oikopleura dioica]
Length = 376
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDA 130
+ +G +H VHMRGLP+RA E+++++FF PV + V I + RP+GEADV F TH DA
Sbjct: 260 DENGQYKHIVHMRGLPYRATEQEISEFFLPVNTLAVRIIFNRENRPAGEADVAFYTHADA 319
Query: 131 MQAMSKDRTNMQHRYIELFLNSS 153
++SKDR N+ RY+ELFL S+
Sbjct: 320 QASLSKDRQNLGSRYVELFLRST 342
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSK 136
V MRG+PF A + D+ DFF + P + I +NG +GEA V F E A QA+ +
Sbjct: 118 IVKMRGMPFSATDHDIRDFFDGCSISPGGIVICLGQNGSANGEALVQFDDKESADQALER 177
Query: 137 DRTNMQHRYIELFLNSS 153
+ NM RYIE+F +SS
Sbjct: 178 HKKNMGQRYIEVFKSSS 194
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ A ++++ +F RP + +GRPSGEA V + A SK
Sbjct: 19 AVRLRGLPWSATKQEICEFLENRPDESSVIICLGRDGRPSGEALVGLYDSDSFELAKSKH 78
Query: 138 RTNMQHRYIELFLNSSS 154
+ N+ RY+E++ +S++
Sbjct: 79 KENLGRRYVEVYESSTA 95
>gi|395754533|ref|XP_003779794.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Pongo abelii]
Length = 440
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 95/183 (51%), Gaps = 26/183 (14%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGGFN-----NDRW---NDRPG--- 58
+P PYDR G N G G +R G GG G +N ND + +DR G
Sbjct: 197 QPGPYDRPGAGKGHNSISRGDGFERMRCGA-YGGSYGDYNDYNGYNDGYECGSDRFGRNF 255
Query: 59 --GFAGP-----RPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVP--VHVDI 109
F G GG + G H VHM GLP+RA E D+ +FF VH+ I
Sbjct: 256 NYSFLGMSDHRYEDGGSTFQSTMG---HCVHMCGLPYRATENDIYNFFXTAQSWRVHIVI 312
Query: 110 HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSS-SPRGGVGGSGSIGGF 168
+GR +GEA+V+F T EDA+ AMSKD+ N HRY+ELFL+S+ +P GG GS +G
Sbjct: 313 G-PDGRVTGEANVEFVTXEDAVAAMSKDKANTHHRYVELFLDSTIAPSGGGYGSQMMGVM 371
Query: 169 GGS 171
G S
Sbjct: 372 GLS 374
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 70 VNESSGPSRHTVHMRG--LPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGEADVDF 124
V + SGP + G LPF ++ ++ FF +VP + + + GR +GEA V +
Sbjct: 95 VLKHSGPDSSVMANDGFVLPFECSKEEIVQFFSWLEIVPNGITLMVDFQGRSTGEAFVQY 154
Query: 125 ATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A+ E A + K + ++H YI++F +S
Sbjct: 155 ASQEIAENVLEKHKERIRHMYIKIFKSS 182
>gi|213513203|ref|NP_001135339.1| G-rich sequence factor 1 [Salmo salar]
gi|209734348|gb|ACI68043.1| G-rich sequence factor 1 [Salmo salar]
Length = 400
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSK 136
+H VHMRGLPF+A D+ FF P+ + + + +GR SGEADV F +H+DA+ AM++
Sbjct: 318 QHFVHMRGLPFQATGDDIVQFFSPLALSRILVEFGPDGRASGEADVYFTSHQDAVSAMTR 377
Query: 137 DRTNMQHRYIELFLNSSS 154
D+ +MQ RYIELFLNS+S
Sbjct: 378 DKAHMQERYIELFLNSTS 395
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ E DV FF + V + D GR SGEA V F T E A +A
Sbjct: 199 VVRIRGLPYSCTETDVMLFFSGLDVAEDGVTLVTDY---RGRNSGEAYVQFLTQEQADEA 255
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+++DR + +RYIE+F + S GG + S+
Sbjct: 256 LTRDRQVIGNRYIEVFPSRRSEIGGRKKTESV 287
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 71 NESSGPSRHTVHM---RGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEAD 121
N GP + V + +GLP+ D+ FF V +H+ ++ +G+P+G+A
Sbjct: 90 NSDPGPEKKEVFIIRAKGLPWSCTTEDLLQFFSECRVRDGVKGIHLTVN-RDGKPNGQAF 148
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
++ +D +A+ K R + RYIE+F ++S
Sbjct: 149 IELEHEDDVGKALEKHRQYLGPRYIEVFEVTNS 181
>gi|340380887|ref|XP_003388953.1| PREDICTED: RNA-binding protein 12B-like [Amphimedon queenslandica]
Length = 746
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKD 137
H V MRGLP+ A+ER++ DFF P+VP V + + GR SGE +V+F THEDA+ AM KD
Sbjct: 584 HCVRMRGLPYSASEREIFDFFSPLVPFRVTLEKDTYGRASGEGEVEFCTHEDAVNAMKKD 643
Query: 138 RTNMQHRYIELFLNSS 153
R ++ RY+ELFL+SS
Sbjct: 644 RGHIGSRYVELFLHSS 659
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKD 137
H V MRGLP+ A+ER++ DFF P+VP V + + GR SGE +V+F THEDA+ AM KD
Sbjct: 397 HCVRMRGLPYSASEREIFDFFSPLVPFRVTLEKDTYGRASGEGEVEFCTHEDAVNAMKKD 456
Query: 138 R 138
R
Sbjct: 457 R 457
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 44 FRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVV 103
FR N + P G + V +RGLP+ + E ++ DFF+ +
Sbjct: 209 FRASQNQFEYECHPMK----------GPGVGGRAGGVVRLRGLPYGSTEDNIRDFFQGIA 258
Query: 104 PVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
H+ + E+GR +GEA V+ ED +A+ + + + HRYIE+F + S
Sbjct: 259 ISHITMQLNESGRETGEAFVELFHEEDVDRALDRHKKVLGHRYIEVFRTTRS 310
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVD--IHYE---NGRPSGEADVDFATHEDAMQAMS 135
V +RGLP+ A D+ DF + V + +H+ +GR SGEA V+ + D +A+
Sbjct: 136 VRLRGLPYSAMASDILDFLKDVQVKDGEKGVHFSFGSDGRVSGEAYVEVCSGGDVERALR 195
Query: 136 KDRTNMQHRYIELFLNSS 153
DR ++ RYIE+F S
Sbjct: 196 HDRDHLGGRYIEVFRASQ 213
>gi|196010820|ref|XP_002115274.1| hypothetical protein TRIADDRAFT_29141 [Trichoplax adhaerens]
gi|190582045|gb|EDV22119.1| hypothetical protein TRIADDRAFT_29141 [Trichoplax adhaerens]
Length = 339
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 88/161 (54%), Gaps = 28/161 (17%)
Query: 1 MRPV--SGGFGRPAPYDRN--DRFGG---ANRFGGGSGPGPIRGGPPRGGFRGGFNNDRW 53
+RP+ S RP PYDR DRF +R+ G G + G+ ++R
Sbjct: 194 IRPLIGSAASSRPRPYDRKRGDRFTRGHPEDRYNQGRG------------YNRGYLDNRP 241
Query: 54 NDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-E 112
+D P RP P+ H++ MRGLPF+ E ++ DFF + ++ I Y +
Sbjct: 242 SDHP--VEPDRPP------DFEPNVHSIRMRGLPFKVTENEIVDFFDQIPLQNIHIEYGD 293
Query: 113 NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
G+ +GEA V+F +EDA++AM+KDR ++HRYIELFLN++
Sbjct: 294 GGKATGEAVVEFYNYEDALEAMNKDRRRIKHRYIELFLNTT 334
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQA 133
S + V +RGLP+ ++ ++A FF ++P + + +GR +GEA V+FA + + +A
Sbjct: 104 SENVVRLRGLPYECSKEEIAQFFTGYEIIPNGITFGVDRDGRSTGEAYVEFANTDVSERA 163
Query: 134 MSKDRTNMQHRYIELFLNSSS 154
+SKD+ + HRYIE+F S
Sbjct: 164 LSKDKETIGHRYIEIFRAKKS 184
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ A DV FF V IH+ +GR SGEA ++F + ED +A+
Sbjct: 8 VVRIRGLPWSATVEDVQKFFTGCRVKEGRQGIHFTYASDGRASGEAYIEFGSLEDFNRAL 67
Query: 135 SKDRTNMQHRYIELFLNSSSPRGGV 159
++R +M RY+E+F + S V
Sbjct: 68 ERNRCHMGKRYVEVFKSKRSEMDYV 92
>gi|410041428|ref|XP_003950996.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H2-like [Pan troglodytes]
Length = 442
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 63/86 (73%), Gaps = 4/86 (4%)
Query: 79 HTVHMRGLPFRANERDVADFFRPV--VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VH RGLP+RA ++ +F+ P+ + VH++I +++ R +G ADV+FA HEDA+ AM+K
Sbjct: 286 HCVHTRGLPYRAT-KNXYNFYSPLNLMRVHIEIGHDD-RVTGRADVEFAAHEDAVAAMAK 343
Query: 137 DRTNMQHRYIELFLNSSSPRGGVGGS 162
D+ NMQHRY+E+FLN+ G GG+
Sbjct: 344 DKANMQHRYMEIFLNAVGTTGASGGA 369
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLPF + ++ FF +VP + + + GR +GEA V A+ E A A+ K
Sbjct: 110 VWLRGLPFGCXKEEIVHFFSGLEIVPNGITLXVDFQGRSTGEAFVQLASQEIAEMALKKH 169
Query: 138 RTNMQHRYIELFLNSSSP 155
R + HRYIE+F NS +
Sbjct: 170 RERIGHRYIEIFXNSQAE 187
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD----IHYENGRPSGEADVDFATHEDAMQAMS 135
V ++GL + + +V F + I+ GRPSGEA V+ + ++A A
Sbjct: 11 VVKVQGLSWSCSADEVMHFSDCKIQNGTSGICFIYTGEGRPSGEAFVELESADEAKLA-X 69
Query: 136 KDRTNMQHRYIELFLNSSSPRGGV 159
KDR M HRY+E+F ++S V
Sbjct: 70 KDRETMGHRYVEVFKSNSVEMDWV 93
>gi|328909179|gb|AEB61257.1| heterogeneous nuclear ribonucleoprotein F-like protein, partial
[Equus caballus]
Length = 113
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 92 ERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFL 150
E D+ +FF P+ PV V I +GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFL
Sbjct: 1 ENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFL 60
Query: 151 NSSS-PRGGVGGSGSIGGFGGSGGGRLGGF 179
NS++ G S + G G S G
Sbjct: 61 NSTTGASNGAYSSQMMQGMGVSAQSTYSGL 90
>gi|148700119|gb|EDL32066.1| mCG11326, isoform CRA_c [Mus musculus]
gi|149043913|gb|EDL97364.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 314
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 66/107 (61%), Gaps = 19/107 (17%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 253
Query: 137 DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGGSD 183
D+ NM ++ GG GS+G G G GG+G D
Sbjct: 254 DKNNMHNQ---------------GGYGSVGRM-GMGNSYSGGYGAPD 284
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|301632397|ref|XP_002945272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like, partial
[Xenopus (Silurana) tropicalis]
Length = 218
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLPFRA E D+A+FF P+ P+ V I +GR +GEADV+FATHEDA+ AMSKD
Sbjct: 155 HFVHMRGLPFRATESDIANFFSPLTPIRVHIDVGADGRATGEADVEFATHEDAVAAMSKD 214
Query: 138 RTNM 141
+ NM
Sbjct: 215 KNNM 218
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 102 VVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+VP + + + Y+ GR +GEA V FA+ E A A+ K + + HRYIE+F +S S
Sbjct: 3 IVPNGITLTVDYQ-GRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFKSSRS 56
>gi|288806582|ref|NP_001165773.1| G-rich RNA sequence binding factor 1 [Xenopus (Silurana)
tropicalis]
gi|189442327|gb|AAI67701.1| Unknown (protein for MGC:186196) [Xenopus (Silurana) tropicalis]
Length = 348
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 58/77 (75%), Gaps = 2/77 (2%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY--ENGRPSGEADVDFATHEDAMQAMSK 136
H +H+RGLPF A+ +D+A+FF P++P+ + I Y + G +GEA V F THEDA+ AM+K
Sbjct: 268 HDIHIRGLPFHASGQDIANFFHPIMPLKISIEYSADAGGATGEAVVRFLTHEDAVAAMAK 327
Query: 137 DRTNMQHRYIELFLNSS 153
+R + QH Y+EL+LNSS
Sbjct: 328 NRCHTQHGYLELYLNSS 344
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHED 129
+S PS V +RGLP+ +E+D+ FF + I + + GR SGEA V F + E
Sbjct: 112 ASPPSDGVVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQRGRKSGEAFVQFLSQEH 171
Query: 130 AMQAMSKDRTNMQHRYIELF 149
A QA+ K + + RYIE+F
Sbjct: 172 ADQALLKHKQEIGSRYIEIF 191
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFF------RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ DV +FF VH I +G+P G+A ++F + ED +A
Sbjct: 3 IVRVRGLPWSCTADDVLNFFGDSNVRNGTEGVHF-IFNRDGKPRGDAVIEFESAEDVQKA 61
Query: 134 MSKDRTNMQHRYIELF 149
+ + + M RY+E+F
Sbjct: 62 VEQHKKYMGQRYVEVF 77
>gi|348513989|ref|XP_003444523.1| PREDICTED: G-rich sequence factor 1-like [Oreochromis niloticus]
Length = 400
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDA 130
+SS H +H+RGLPF+A+ D+ FF P+ + I +GRPSGEADV F H DA
Sbjct: 312 QSSTVPLHYIHVRGLPFQASGEDIVKFFYPLAVSKILIECGPDGRPSGEADVYFHCHRDA 371
Query: 131 MQAMSKDRTNMQHRYIELFLNS 152
+ AMSKDR N+ RYIELFLNS
Sbjct: 372 VAAMSKDRMNIGERYIELFLNS 393
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN---GRPSGEADVDFATHEDAMQAMSK 136
V +RGLPF E D+ FF + I GR SG A V F + E A +A+ +
Sbjct: 192 VVLLRGLPFTCTEDDIVHFFSGLEITENGITMVTDSRGRKSGVAYVQFTSQEAADEALQR 251
Query: 137 DRTNMQHRYIELF 149
DR + +RYIE+F
Sbjct: 252 DREIIGNRYIEVF 264
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 49 NNDRWNDRPGGFAG----PRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRP--- 101
++ R+ + GG P P E + V ++GLP+ +D+ FF
Sbjct: 60 SHSRFCTKTGGTCEDDYPPLPAYHPETEPETKEVYIVQVKGLPWSCTTQDLLQFFSECRI 119
Query: 102 ---VVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
V +H+ + GRPSG A ++ ED +A+ K R + RY+E++
Sbjct: 120 RDGVKGIHLTLD-RLGRPSGRAFIEMEHEEDVSKALEKHRQYLGPRYVEVY 169
>gi|350529357|ref|NP_001121205.2| G-rich RNA sequence binding factor 1 [Xenopus laevis]
Length = 440
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%), Gaps = 2/78 (2%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY--ENGRPSGEADVDFATHEDAMQAMSK 136
H +H+RGLPF A+ +D+A+FF P++P+ + I Y + G +GEA V F TH+DA+ AM+K
Sbjct: 360 HDIHIRGLPFHASGQDIANFFHPIMPLKISIEYSADAGGATGEAVVRFLTHDDAVAAMAK 419
Query: 137 DRTNMQHRYIELFLNSSS 154
+R + QH Y+EL+LNSS+
Sbjct: 420 NRCHSQHGYLELYLNSST 437
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHED 129
+S PS V +RGLP+ +E+D+ FF + I + + GR SGEA V F + E
Sbjct: 204 ASPPSDGIVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQRGRKSGEAFVQFLSQEH 263
Query: 130 AMQAMSKDRTNMQHRYIELF 149
A QA+ K + + RYIE+F
Sbjct: 264 ADQALLKHKQEIGSRYIEIF 283
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ DV +FF VH I +G+P G+A ++F + ED +A
Sbjct: 95 IVRVRGLPWSCTADDVLNFFDDSNVRNGTDGVHF-IFNRDGKPRGDAVIEFESAEDVQKA 153
Query: 134 MSKDRTNMQHRYIELF 149
+ + + M RY+E+F
Sbjct: 154 VEQHKKYMGQRYVEVF 169
>gi|193636729|ref|XP_001950119.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Acyrthosiphon pisum]
Length = 440
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 59/79 (74%), Gaps = 3/79 (3%)
Query: 75 GPSR--HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENG-RPSGEADVDFATHEDAM 131
PSR H VHM+GLP +AN+ D+A FF P+ PV++ + N +P GEA+V+F EDA+
Sbjct: 276 SPSRPLHVVHMKGLPLKANKNDIAKFFEPLKPVNIHFIFNNNNQPYGEANVEFGNIEDAV 335
Query: 132 QAMSKDRTNMQHRYIELFL 150
QAMSK++T M+HRYIELF+
Sbjct: 336 QAMSKNKTFMEHRYIELFM 354
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSR------HTVHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R W + +G + + V +RGLPF + ++ +FF+ + P + I
Sbjct: 101 FPSKRSEMEWAIKITGSTLDNELYDNCVRIRGLPFDYTKNEIVEFFQGLEITPDDITIVI 160
Query: 112 -ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
GR EA V F E+ +A+ K ++ RYIE+F +S
Sbjct: 161 NSKGRRMKEAFVQFVNRENLEKALQKHMEKIRFRYIEVFRSS 202
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYE---NGRPSGEADVDFATHEDAM 131
V M GL D+ F + V +H+ G+PS +A V+ + E
Sbjct: 24 VVKMHGLSLSTTADDIIKFLNTLGEAKVKDGASGVHFTMNRKGKPSSQAYVEMESEESLK 83
Query: 132 QAMSKDRTNMQHRYIELF 149
A+ KDR M +RYI++F
Sbjct: 84 AALKKDREYMGNRYIKVF 101
>gi|410923501|ref|XP_003975220.1| PREDICTED: G-rich sequence factor 1-like [Takifugu rubripes]
Length = 380
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H +HMRGLPF+ + DV +FFRP+V + + + +GRPSGEADV F HEDA+ AMS+D
Sbjct: 302 HYIHMRGLPFQVSGEDVVNFFRPLVVSKMLMEFGPDGRPSGEADVYFGRHEDAVAAMSRD 361
Query: 138 RTNMQHRYIELFLNS 152
R ++ RYIELFLNS
Sbjct: 362 REHIGGRYIELFLNS 376
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V +RGLPF + + D+A FF + V I GR SGEA V F + E+A +A+ +
Sbjct: 187 VVRLRGLPFSSTKADIAQFFSDLDIVENGITIITDHAGRNSGEAFVQFFSKEEAEKALLR 246
Query: 137 DRTNMQHRYIELF 149
DR M RYIE+F
Sbjct: 247 DRAVMGTRYIEVF 259
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 8/144 (5%)
Query: 63 PRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRP 116
P P + E V ++GL + +D+ FF V +H ++ + GRP
Sbjct: 73 PLPAYQHETEEERKEVFIVQVKGLLWSCTPQDLLKFFSDCRIRDGVKGIHFTLN-KMGRP 131
Query: 117 SGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRL 176
+G A ++ ED +A+ K R + RY+E++ + S + + G G RL
Sbjct: 132 TGIAFIEMEDEEDVNKALEKHRQYLGPRYVEVYEVTESDAEAIMEKAT-GSQADDGVVRL 190
Query: 177 GGFGGSDPSSPFERRNPNQAYVEN 200
G S + + + VEN
Sbjct: 191 RGLPFSSTKADIAQFFSDLDIVEN 214
>gi|256090131|ref|XP_002581067.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
Length = 472
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 11/115 (9%)
Query: 53 WNDRPGGFAGPRP---------GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVV 103
+N P GF GP P G ++ + H+V MRGLP+ A + D+ F P+
Sbjct: 262 YNSPPRGFEGPSPSKGSNFGPPGHYEYDDPQSSTGHSVRMRGLPYSATKEDIDRFLSPLQ 321
Query: 104 PVHVDIHYENG-RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
PV++ + + RP+GEA VDFA+H++A +AM KDR + RYIELFL +S+P+G
Sbjct: 322 PVNIRMRFNAANRPTGEAIVDFASHDEAKEAMKKDREKIGPRYIELFL-ASTPKG 375
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYEN-GRPSGEADVDFATHED 129
SS H V +RGLP+ ++++ FF + P + + ++ GR +GEA V F + E
Sbjct: 96 SSNRREHVVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSES 155
Query: 130 AMQAMSKDRTNMQHRYIELFLNS 152
+A K + HRYIE+F ++
Sbjct: 156 LARAKEKHMEKIGHRYIEIFEST 178
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRP--VVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAM 134
V +RGLPF AN D+ FF + I++ NGR +GEA ++ + +D +AM
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQGSNGRSNGEAFIELESKDDKQKAM 63
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ ++ RYIE+F + S
Sbjct: 64 AHHNQHLGRRYIEVFDSCSE 83
>gi|256090133|ref|XP_002581068.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353232934|emb|CCD80289.1| putative heterogeneous nuclear ribonucleoprotein (hnrnp)
[Schistosoma mansoni]
Length = 386
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 11/115 (9%)
Query: 53 WNDRPGGFAGPRP---------GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVV 103
+N P GF GP P G ++ + H+V MRGLP+ A + D+ F P+
Sbjct: 262 YNSPPRGFEGPSPSKGSNFGPPGHYEYDDPQSSTGHSVRMRGLPYSATKEDIDRFLSPLQ 321
Query: 104 PVHVDIHYENG-RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
PV++ + + RP+GEA VDFA+H++A +AM KDR + RYIELFL +S+P+G
Sbjct: 322 PVNIRMRFNAANRPTGEAIVDFASHDEAKEAMKKDREKIGPRYIELFL-ASTPKG 375
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYEN-GRPSGEADVDFATHED 129
SS H V +RGLP+ ++++ FF + P + + ++ GR +GEA V F + E
Sbjct: 96 SSNRREHVVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSES 155
Query: 130 AMQAMSKDRTNMQHRYIELFLNS 152
+A K + HRYIE+F ++
Sbjct: 156 LARAKEKHMEKIGHRYIEIFEST 178
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRP--VVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAM 134
V +RGLPF AN D+ FF + I++ NGR +GEA ++ + +D +AM
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQGSNGRSNGEAFIELESKDDKQKAM 63
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ ++ RYIE+F + S
Sbjct: 64 AHHNQHLGRRYIEVFDSCSE 83
>gi|402869627|ref|XP_003898853.1| PREDICTED: G-rich sequence factor 1 [Papio anubis]
Length = 606
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 14/128 (10%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F N++ + P P + + S H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 472 AFENEKEIELPKEVPEKLPEA--ADFGTMSSLHFVHMRGLPFQANAQDIINFFAPLKPVR 529
Query: 107 VDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHR------YIELFLNSSSPRGGV 159
+ + Y +G+ +GEADV F THEDA+ AM KDR+++ HR ++ +FL G+
Sbjct: 530 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRVKQEAFHLHIFLGR-----GI 584
Query: 160 GGSGSIGG 167
SG +
Sbjct: 585 SSSGLLAA 592
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 352 VVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 411
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 412 REEIGNRYIEIF 423
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQA 133
+ + +GLP+ DV +FF + + IH+ +G+ G+A ++ + +D +A
Sbjct: 251 YLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 310
Query: 134 MSKDRTNMQHRYIELF 149
+ K R M RY+E++
Sbjct: 311 LEKHRMYMGQRYVEVY 326
>gi|353232935|emb|CCD80290.1| putative heterogeneous nuclear ribonucleoprotein (hnrnp)
[Schistosoma mansoni]
Length = 497
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 11/115 (9%)
Query: 53 WNDRPGGFAGPRP---------GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVV 103
+N P GF GP P G ++ + H+V MRGLP+ A + D+ F P+
Sbjct: 262 YNSPPRGFEGPSPSKGSNFGPPGHYEYDDPQSSTGHSVRMRGLPYSATKEDIDRFLSPLQ 321
Query: 104 PVHVDIHYENG-RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
PV++ + + RP+GEA VDFA+H++A +AM KDR + RYIELFL +S+P+G
Sbjct: 322 PVNIRMRFNAANRPTGEAIVDFASHDEAKEAMKKDREKIGPRYIELFL-ASTPKG 375
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYEN-GRPSGEADVDFATHED 129
SS H V +RGLP+ ++++ FF + P + + ++ GR +GEA V F + E
Sbjct: 96 SSNRREHVVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSES 155
Query: 130 AMQAMSKDRTNMQHRYIELF 149
+A K + HRYIE+F
Sbjct: 156 LARAKEKHMEKIGHRYIEIF 175
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRP--VVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAM 134
V +RGLPF AN D+ FF + I++ NGR +GEA ++ + +D +AM
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQGSNGRSNGEAFIELESKDDKQKAM 63
Query: 135 SKDRTNMQHRYIELFLNSS 153
+ ++ RYIE+F + S
Sbjct: 64 AHHNQHLGRRYIEVFDSCS 82
>gi|169641981|gb|AAI60694.1| LOC100158276 protein [Xenopus laevis]
Length = 348
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%), Gaps = 2/78 (2%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY--ENGRPSGEADVDFATHEDAMQAMSK 136
H +H+RGLPF A+ +D+A+FF P++P+ + I Y + G +GEA V F TH+DA+ AM+K
Sbjct: 268 HDIHIRGLPFHASGQDIANFFHPIMPLKISIEYSADAGGATGEAVVRFLTHDDAVAAMAK 327
Query: 137 DRTNMQHRYIELFLNSSS 154
+R + QH Y+EL+LNSS+
Sbjct: 328 NRCHSQHGYLELYLNSST 345
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHED 129
+S PS V +RGLP+ +E+D+ FF + I + + GR SGEA V F + E
Sbjct: 112 ASPPSDGIVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQRGRKSGEAFVQFLSQEH 171
Query: 130 AMQAMSKDRTNMQHRYIELF 149
A QA+ K + + RYIE+F
Sbjct: 172 ADQALLKHKQEIGSRYIEIF 191
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ DV +FF VH I +G+P G+A ++F + ED +A
Sbjct: 3 IVRVRGLPWSCTADDVLNFFDDSNVRNGTDGVHF-IFNRDGKPRGDAVIEFESAEDVQKA 61
Query: 134 MSKDRTNMQHRYIELF 149
+ + + M RY+E+F
Sbjct: 62 VEQHKKYMGQRYVEVF 77
>gi|47218706|emb|CAG05678.1| unnamed protein product [Tetraodon nigroviridis]
Length = 488
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 61/122 (50%), Gaps = 46/122 (37%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLPFRA E D+A FF P+ P+ V I + NG+ +GEADV+F +HEDA+ AMSKD
Sbjct: 360 HFVHMRGLPFRATENDIAKFFSPLNPLRVHIDFAPNGKSTGEADVEFRSHEDAVAAMSKD 419
Query: 138 RTNM---------------------------------------------QHRYIELFLNS 152
+ +M +HRYIELFLNS
Sbjct: 420 KNHMRRCSHPSLSVACHPKVRFRAAEAGAWSVFASGMGLLNVPLPLSSTEHRYIELFLNS 479
Query: 153 SS 154
+
Sbjct: 480 TC 481
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 33/125 (26%)
Query: 69 WVNESSGPSRH------TVHMRGLPFRANERDVADFFRPVVPVHVD-------------- 108
WV + SGP+ + T+ +RGLPF ++ ++ FF +P V
Sbjct: 3 WVLKRSGPADYDSCSGCTLRLRGLPFGCSKEEIVQFFSVSIPTSVSMCAWVEGLRIVPNG 62
Query: 109 ----IHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS--------SSPR 156
+ Y+ GR +GEA V FA+ E A +A+ K + + HRYIE+F +S PR
Sbjct: 63 ITLPVDYQ-GRSTGEAFVQFASKEIAEKALGKHKERIGHRYIEIFKSSRNEIRAYYELPR 121
Query: 157 GGVGG 161
G+GG
Sbjct: 122 RGMGG 126
>gi|7739449|gb|AAF68852.1|AF132364_1 hnRNP 2H9E [Homo sapiens]
gi|7739439|gb|AAF68846.1| hnRNP 2H9E [Homo sapiens]
Length = 139
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 52/66 (78%), Gaps = 3/66 (4%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 58 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 116
Query: 137 DRTNMQ 142
D+ NM+
Sbjct: 117 DKNNMR 122
>gi|339245667|ref|XP_003374467.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316972254|gb|EFV55937.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 370
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 82/156 (52%), Gaps = 26/156 (16%)
Query: 27 GGGSGPGPIRGGPPRGGFRGG-----FNNDRWNDRPGGFAGPRPGGRWVNESS------- 74
GGG RG G+RGG +N+D + P PR GG + +S
Sbjct: 143 GGGRIVDHDRGYYDTAGYRGGGPGSMYNDDFFTSSP---INPR-GGYYDQGASFGGRMGG 198
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQA 133
+ +HMRGLP++A D+ +FF P+ ++V I + E RP+GEADV+F DA++A
Sbjct: 199 RGAGFALHMRGLPYKATANDIMEFFYPIKIMNVRILFDERNRPTGEADVEFQCESDALEA 258
Query: 134 MSKDRTNMQHRYIELFLNSS---------SPRGGVG 160
+ KDR M RYIELF+N+ +PRGG G
Sbjct: 259 LKKDRKTMGERYIELFINTGGGPIFGSYFTPRGGRG 294
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAM 134
H V +RGLP+ + E D+ FF + + IH+ + GRPSGEA ++F + +D +A+
Sbjct: 8 HVVRVRGLPWSSKEEDIRKFFHDCSDI-IGIHFTYSKEGRPSGEAYLEFGSADDVDKAL 65
>gi|344244475|gb|EGW00579.1| G-rich sequence factor 1 [Cricetulus griseus]
Length = 621
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +D+ + P + P V+ S PS H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 417 AFESDKEIELPKEMSEKLPET--VDFGSMPSLHFVHMRGLPFQANAQDIINFFAPLKPVR 474
Query: 107 VDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRTNMQ 142
+ + Y +G+ +GEADV F THEDA+ AM KDR++++
Sbjct: 475 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVR 511
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 297 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 356
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 357 REEIGNRYIEIF 368
>gi|7739447|gb|AAF68851.1|AF132363_2 hnRNP 2H9D [Homo sapiens]
gi|7739438|gb|AAF68845.1| hnRNP 2H9D [Homo sapiens]
gi|119574674|gb|EAW54289.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_f
[Homo sapiens]
Length = 145
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 52/66 (78%), Gaps = 3/66 (4%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 64 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 122
Query: 137 DRTNMQ 142
D+ NM+
Sbjct: 123 DKNNMR 128
>gi|170035383|ref|XP_001845549.1| G-rich sequence factor-1 [Culex quinquefasciatus]
gi|167877365|gb|EDS40748.1| G-rich sequence factor-1 [Culex quinquefasciatus]
Length = 508
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAM 131
S+ VH+RG+PF +++D+ DFF P+ PV +I Y++ GRPSGE + F T E+AM
Sbjct: 418 SAEQDLFCVHLRGMPFSCDDQDIQDFFMPLRPVKANIEYDSRGRPSGEGNAYFETVEEAM 477
Query: 132 QAMSKDRTNMQHRYIELFLNSSSPRG 157
+AM K + M RYIELF + P+G
Sbjct: 478 KAMKKHKEKMGSRYIELFAGARKPQG 503
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH-----VDIHYENGRPSGEADVDFA 125
+E GP + +RGLP+ + D+ FF + + + + + GR SGEA V+FA
Sbjct: 106 DEDGGP---VLKLRGLPWSCTKEDIKRFFVGLTIKNGINGILLLTDQLGRASGEAIVEFA 162
Query: 126 THEDAMQAMSKDRTNMQHRYIELFLNSS 153
T DA QAM+K + + RYIELF +S+
Sbjct: 163 TEADAEQAMNKQKEKIGSRYIELFRSST 190
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 77 SRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAM 134
S + +RGLP+ E+D+ DF + V VH+ I+ R +GEA + T +D ++A+
Sbjct: 15 SAFYIRLRGLPWNITEQDIRDFLQGVQVEHVHIGINAMTKRQTGEAYLRLPTLDDQIKAL 74
Query: 135 SKDRTNMQHRYIELF 149
++ + HRYIE+F
Sbjct: 75 DLNKATIGHRYIEVF 89
>gi|390465839|ref|XP_003733475.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein F-like [Callithrix jacchus]
Length = 573
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAM 134
P+ H V MRG D+ + F P+ PV V I +GR + +ADV+FAT E+A AM
Sbjct: 450 PTSHCVFMRGCHAAETNSDIYNLFSPLNPVRVHIEMGPDGRLTCKADVEFATWEEAGAAM 509
Query: 135 SKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGF 179
SKDR NMQHRYIEL LN ++ G G+ S G G G G
Sbjct: 510 SKDRANMQHRYIELSLNLTT--GASNGAXSCQGMQGVGVSTYTGL 552
>gi|432117035|gb|ELK37602.1| Heterogeneous nuclear ribonucleoprotein H [Myotis davidii]
Length = 188
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 98 FFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPR 156
F P+ PV V I +GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+EL +++
Sbjct: 57 IFSPLNPVRVHIAISPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELLNSTAGAS 116
Query: 157 GGVGGSGSIGGFGGS 171
GG GS +GG G S
Sbjct: 117 GGAYGSQMLGGVGLS 131
>gi|226487868|emb|CAX75599.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 292
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENG-RPSGEADVDFATHEDAMQAMSKD 137
H+V MRGLP+ A + D+ F P+ PV++ + + RP+GEA VDFA+H++A +AM KD
Sbjct: 120 HSVRMRGLPYSATKEDIDRFLAPLQPVNIRMRFNAASRPTGEAIVDFASHDEAKEAMKKD 179
Query: 138 RTNMQHRYIELFLNSS 153
R + RYIELFL S+
Sbjct: 180 REKIGSRYIELFLAST 195
>gi|226487878|emb|CAX75604.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 292
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENG-RPSGEADVDFATHEDAMQAMSKD 137
H+V MRGLP+ A + D+ F P+ PV++ + + RP+GEA VDFA+H++A +AM KD
Sbjct: 120 HSVRMRGLPYSATKEDIDRFLAPLQPVNIRMRFNAASRPTGEAIVDFASHDEAKEAMKKD 179
Query: 138 RTNMQHRYIELFLNSS 153
R + RYIELFL S+
Sbjct: 180 REKIGSRYIELFLAST 195
>gi|390361167|ref|XP_003729861.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 1
[Strongylocentrotus purpuratus]
Length = 455
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
++VHMRGLPF E+D+ +FF P +V IH NG+ +G A VDF TH++A AM KD
Sbjct: 325 YSVHMRGLPFSVTEQDIKEFFHGSATPSNVVIHDINGKRNGFAAVDFRTHDEAKAAMKKD 384
Query: 138 RTNMQHRYIELFLNSSS 154
+ N+ RYIELFL+SS
Sbjct: 385 KNNIGSRYIELFLHSSE 401
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 79 HTVHMRGLPFRANERDVADFFRPV----VPVHVD-IHYENGRPSGEADVDFATHEDAMQA 133
+ + RGLP+ +V DFF P + I +GRPSGE V+F + D QA
Sbjct: 8 YVIRARGLPWSTTAEEVMDFFEDCNILGAPDSIKFIFNSSGRPSGECFVEFDSEGDFQQA 67
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGF 179
M KD+ +Q RYIELF + S V S G GG G +L G
Sbjct: 68 MKKDKNYLQKRYIELFKSKRSEMEWVTNRNSGGADGGEGLVKLRGL 113
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 60 FAGPRPGGRWV-NESSGPS---RHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---E 112
F R WV N +SG + V +RGLPF ++ ++A+FF + I
Sbjct: 83 FKSKRSEMEWVTNRNSGGADGGEGLVKLRGLPFSCSKEEIAEFFSGLTIQANGITLPSDN 142
Query: 113 NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLN--------SSSPRGGVGGSGS 164
+GR +GEA V FA+ E A +A+ K +++M HRYIE+F + ++ RGG GG
Sbjct: 143 DGRRTGEAFVLFASKEIAEKALKKHKSHMGHRYIEVFKSFPDELRRATNPTRGGRGGMNR 202
Query: 165 IGGFGGSGGGRLGGF 179
G + GGR GF
Sbjct: 203 PGPYDRYSGGRGDGF 217
>gi|157111783|ref|XP_001651726.1| G-rich sequence factor-1, putative [Aedes aegypti]
gi|108878304|gb|EAT42529.1| AAEL005947-PA [Aedes aegypti]
Length = 471
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKDR 138
VH+RG+PF +E+D+ DFF P+ PV ++ +++ GRPSGE D F T E+AM+AM K +
Sbjct: 389 CVHLRGMPFSCDEQDIYDFFMPLRPVKCNVSFDSRGRPSGEGDAYFDTMEEAMKAMKKHK 448
Query: 139 TNMQHRYIELFLNSSSPR 156
M RYIELF S P+
Sbjct: 449 EKMGSRYIELFAGSRRPQ 466
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH-----VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ MRGLP+ DV FF + + V + + GR SGEA V+FAT +A QAM
Sbjct: 117 VLRMRGLPWSCTTEDVKRFFSGLTIKNGYNGIVLLLDQLGRASGEAIVEFATDAEADQAM 176
Query: 135 SKDRTNMQHRYIELFLNSS 153
SK + + +RYIELF +S+
Sbjct: 177 SKQKEKIGNRYIELFRSST 195
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDR 138
+ +RGLP+ E D+ DF + VH+ I+ R +GEA + T ED ++A+ +++
Sbjct: 24 IRLRGLPWNITEGDIRDFLSGVEIDQVHICINQMTKRQTGEAYLRMPTLEDQIKALDQNK 83
Query: 139 TNMQHRYIELFLNS 152
+ HRYIE+F S
Sbjct: 84 ATLGHRYIEVFTAS 97
>gi|351700500|gb|EHB03419.1| Heterogeneous nuclear ribonucleoprotein H3 [Heterocephalus glaber]
Length = 260
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 113 NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVG-GSGSIGGFGGS 171
+GR GEADV+F THED + AMSKD+ NMQHRYIELFLN S+PRGG G G IGG+G
Sbjct: 160 DGRAKGEADVEFVTHEDPVAAMSKDKNNMQHRYIELFLN-STPRGGSGMGDSGIGGYGRD 218
Query: 172 GGGRLGGFG 180
G G G+G
Sbjct: 219 GMGNQAGYG 227
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV + GLPF ++ ++ FF+ ++P + + + Y+ GR +GE
Sbjct: 3 WVMKHNGPNDASDGTVRLLGLPFGCSKEEIVQFFQWLEIMPNGITMTMDYQ-GRSTGETF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSKIKG 98
>gi|157111781|ref|XP_001651725.1| G-rich sequence factor-1, putative [Aedes aegypti]
gi|108878303|gb|EAT42528.1| AAEL005947-PB [Aedes aegypti]
Length = 491
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKDR 138
VH+RG+PF +E+D+ DFF P+ PV ++ +++ GRPSGE D F T E+AM+AM K +
Sbjct: 409 CVHLRGMPFSCDEQDIYDFFMPLRPVKCNVSFDSRGRPSGEGDAYFDTMEEAMKAMKKHK 468
Query: 139 TNMQHRYIELFLNSSSPR 156
M RYIELF S P+
Sbjct: 469 EKMGSRYIELFAGSRRPQ 486
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH-----VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ MRGLP+ DV FF + + V + + GR SGEA V+FAT +A QAM
Sbjct: 117 VLRMRGLPWSCTTEDVKRFFSGLTIKNGYNGIVLLLDQLGRASGEAIVEFATDAEADQAM 176
Query: 135 SKDRTNMQHRYIELFLNSS 153
SK + + +RYIELF +S+
Sbjct: 177 SKQKEKIGNRYIELFRSST 195
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDR 138
+ +RGLP+ E D+ DF + VH+ I+ R +GEA + T ED ++A+ +++
Sbjct: 24 IRLRGLPWNITEGDIRDFLSGVEIDQVHICINQMTKRQTGEAYLRMPTLEDQIKALDQNK 83
Query: 139 TNMQHRYIELFLNS 152
+ HRYIE+F S
Sbjct: 84 ATLGHRYIEVFTAS 97
>gi|76155975|gb|AAX27224.2| SJCHGC06533 protein [Schistosoma japonicum]
Length = 249
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 11/112 (9%)
Query: 53 WNDRPGGFAGPRP--GGR--------WVNESSGPSRHTVHMRGLPFRANERDVADFFRPV 102
++ P GF GP P G R + + + H+V MRGLP+ A + D+ F P+
Sbjct: 41 YSSPPRGFDGPSPLKGSRFWSPGYPEYDDHPQSSTGHSVRMRGLPYSATKEDIDRFLAPL 100
Query: 103 VPVHVDIHYENG-RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
PV++ + + RP+GEA VDFA+H++A +AM KDR + RYIELFL S+
Sbjct: 101 QPVNIRMRFNAASRPTGEAIVDFASHDEAKEAMKKDREKIGSRYIELFLAST 152
>gi|355694925|gb|AER99832.1| heteroproteinous nuclear ribonucleoprotein H3 [Mustela putorius
furo]
Length = 108
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 50/64 (78%), Gaps = 3/64 (4%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 46 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDI-GADGRATGEADVEFVTHEDAVAAMSK 104
Query: 137 DRTN 140
D+ N
Sbjct: 105 DKNN 108
>gi|358341226|dbj|GAA32134.2| heterogeneous nuclear ribonucleoprotein F/H [Clonorchis sinensis]
Length = 404
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H+V +RGLPF A D+ F P+ PV+V I +GRP+GEA VDFA+H++A +AM KD
Sbjct: 303 HSVRLRGLPFSATADDIDRFLAPLQPVNVRIRMNSSGRPTGEAVVDFASHDEAKEAMKKD 362
Query: 138 RTNMQHRYIELFLNSSSPRG 157
R + RYIELFL +S+P G
Sbjct: 363 REKIGSRYIELFL-ASTPMG 381
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMS 135
+ V +RGLP+ ++++ FF + P + + ++ GR +GEA V F + E +A
Sbjct: 101 YVVRLRGLPYDTEKKEIYAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSAEMLARAKE 160
Query: 136 KDRTNMQHRYIELFLNS 152
K + HRYIE+F +S
Sbjct: 161 KHMEKIGHRYIEIFESS 177
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD--IHYE---NGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ A D+ DFF+ V + I + NGR +GEA ++ + ++ +A
Sbjct: 3 VVRIRGLPYSARADDIIDFFKDVKIKNGKRGIFFPQGPNGRSNGEAFIELESKQEIEKAT 62
Query: 135 SKDRTNMQHRYIELF 149
+ +M RYIE+F
Sbjct: 63 AHHNEHMGRRYIEVF 77
>gi|170592721|ref|XP_001901113.1| Heterogeneous nuclear ribonucleoprotein H' [Brugia malayi]
gi|158591180|gb|EDP29793.1| Heterogeneous nuclear ribonucleoprotein H', putative [Brugia
malayi]
Length = 385
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 59/101 (58%), Gaps = 6/101 (5%)
Query: 53 WNDRP--GGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIH 110
W D P GG G P R ++ P + + MRGLP+RA ERD+ DFF+P+ P +D+
Sbjct: 284 WRDEPPMGGHRGYSPPRR--RYTTPPPEYCIRMRGLPYRATERDIIDFFQPLRPASIDVL 341
Query: 111 YENG--RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
YE G RPSGEA V+F D AM ++R M RY+EL
Sbjct: 342 YEYGTDRPSGEAIVEFRNRADFDAAMQRNRNYMGSRYVELI 382
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 76 PSRHT--VHMRGLPFRANERDVADFFRPVVPVH--VDIHYE--NGRPSGEADVDFATHED 129
P+R T V + GLP+ + ++ FF P+ + + Y+ +G+P GEA V F E
Sbjct: 105 PARETSIVRLAGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVAFIDDES 164
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGR 175
A +A++K++ +QHRY++++ +S G GG GGGR
Sbjct: 165 ASKALAKNKEYIQHRYVDIYPSSY----GEMLRALDGGLDPYGGGR 206
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 80 TVHMRGLPFRANERDVADFF----RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
+ RGLP+ E D+ +FF R + + + +GR SGE V F++ ED A++
Sbjct: 7 VMKCRGLPWSCTEDDLREFFGEAARSITQIKLTKD-RDGRASGEGFVVFSSREDYDFALT 65
Query: 136 KDRTNMQHRYIELFLNSS 153
KD+ + RY+EL SS
Sbjct: 66 KDKKYIGKRYVELQQVSS 83
>gi|431900090|gb|ELK08023.1| G-rich sequence factor 1 [Pteropus alecto]
Length = 380
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 61/96 (63%), Gaps = 3/96 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +++ + P + P V+ + S H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 266 AFESEKEIELPKEMSEKLPEA--VDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVR 323
Query: 107 VDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRTNM 141
+ + Y +G+ +GEADV F THEDA+ AM KDR+++
Sbjct: 324 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHV 359
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + + R +GEA V F E A QA+ K
Sbjct: 146 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDFRGRRKTGEAYVQFEEPEMANQALLKH 205
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 206 REEIGNRYIEIF 217
>gi|393908924|gb|EFO28044.2| heterogeneous nuclear ribonucleoprotein H [Loa loa]
Length = 370
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 59/101 (58%), Gaps = 6/101 (5%)
Query: 53 WNDRP--GGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIH 110
W D P GG G P R ++ P + + MRGLP+RA ERD+ DFF+P+ P +D+
Sbjct: 269 WRDEPPMGGHRGYSPPRR--RYTTPPPEYCIRMRGLPYRATERDIIDFFQPLRPASIDVL 326
Query: 111 YENG--RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
YE G RPSGEA V+F D AM ++R M RY+EL
Sbjct: 327 YEYGTDRPSGEAIVEFRNRADFDAAMQRNRNYMGSRYVELI 367
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 6/89 (6%)
Query: 70 VNESSGPSRHT--VHMRGLPFRANERDVADFFRPVVPVH--VDIHYE--NGRPSGEADVD 123
V + + P R T V + GLP+ + ++ FF P+ + + Y+ +G+P GEA V
Sbjct: 99 VADPNLPGRETSIVRLGGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVA 158
Query: 124 FATHEDAMQAMSKDRTNMQHRYIELFLNS 152
F + A +A++K++ +QHRY++++ +S
Sbjct: 159 FTDEDSASKALAKNKEYIQHRYVDIYPSS 187
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 80 TVHMRGLPFRANERDVADFF----RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
+ RGLP+ E D+ +FF R + + + +GR SGE V F++ ED A++
Sbjct: 7 IMKCRGLPWSCTEDDLREFFGEAARSITQIKL-TKDRDGRASGEGYVVFSSREDYDFALT 65
Query: 136 KDRTNMQHRYIELFLNSS 153
KD+ + RY+EL SS
Sbjct: 66 KDKKYIGKRYVELQQVSS 83
>gi|350592780|ref|XP_003483535.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Sus
scrofa]
Length = 161
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 48/61 (78%), Gaps = 3/61 (4%)
Query: 95 VADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSKD+ NMQHRYIELFLNS
Sbjct: 26 LQQFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNS 84
Query: 153 S 153
+
Sbjct: 85 T 85
>gi|312065923|ref|XP_003136024.1| heterogeneous nuclear ribonucleoprotein H [Loa loa]
Length = 383
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 59/101 (58%), Gaps = 6/101 (5%)
Query: 53 WNDRP--GGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIH 110
W D P GG G P R ++ P + + MRGLP+RA ERD+ DFF+P+ P +D+
Sbjct: 282 WRDEPPMGGHRGYSPPRR--RYTTPPPEYCIRMRGLPYRATERDIIDFFQPLRPASIDVL 339
Query: 111 YENG--RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
YE G RPSGEA V+F D AM ++R M RY+EL
Sbjct: 340 YEYGTDRPSGEAIVEFRNRADFDAAMQRNRNYMGSRYVELI 380
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 70 VNESSGPSRHT--VHMRGLPFRANERDVADFFRPVVPVH--VDIHYE--NGRPSGEADVD 123
V + + P R T V + GLP+ + ++ FF P+ + + Y+ +G+P GEA V
Sbjct: 99 VADPNLPGRETSIVRLGGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVA 158
Query: 124 FATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
F + A +A++K++ +QHRY L + S
Sbjct: 159 FTDEDSASKALAKNKEYIQHRYCSLTVYHIS 189
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 80 TVHMRGLPFRANERDVADFF----RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
+ RGLP+ E D+ +FF R + + + +GR SGE V F++ ED A++
Sbjct: 7 IMKCRGLPWSCTEDDLREFFGEAARSITQIKLTKD-RDGRASGEGYVVFSSREDYDFALT 65
Query: 136 KDRTNMQHRYIELFLNSS 153
KD+ + RY+EL SS
Sbjct: 66 KDKKYIGKRYVELQQVSS 83
>gi|332819574|ref|XP_526590.3| PREDICTED: G-rich sequence factor 1 [Pan troglodytes]
Length = 547
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y +G+ +GEADV F THEDA+
Sbjct: 478 TASSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 537
Query: 133 AMSKDRTNMQ 142
AM KDR++++
Sbjct: 538 AMLKDRSHVR 547
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 333 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 392
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 393 REEIGNRYIEIF 404
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQAMS 135
+ +GLP+ DV +FF + + IH+ +G+ G+A ++ + +D +A+
Sbjct: 234 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 293
Query: 136 KDRTNMQHRYIELF 149
K R M RY+E++
Sbjct: 294 KHRMYMGQRYVEVY 307
>gi|347968776|ref|XP_312018.5| AGAP002892-PA [Anopheles gambiae str. PEST]
gi|333467847|gb|EAA08189.6| AGAP002892-PA [Anopheles gambiae str. PEST]
Length = 589
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAM 131
S P+ + VHMRG+PF +E+D+ DFF P+ PV + + RPSGE D F T E+A+
Sbjct: 475 SDEPNLYCVHMRGMPFSCDEQDMYDFFMPLRPVKCVVQMNSRKRPSGEGDAYFETKEEAI 534
Query: 132 QAMSKDRTNMQHRYIELF 149
+AM KD+ M RYIELF
Sbjct: 535 KAMRKDKEKMGSRYIELF 552
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 8/83 (9%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH----VDIHYEN-GRPSGEADVDFAT 126
ES GP V MRGLP+ + + DV FF+ + + + + +N GR SGEA V+FAT
Sbjct: 144 ESGGP---VVKMRGLPWTSTKDDVKAFFQGLTIKNGYNGILLLLDNLGRASGEAIVEFAT 200
Query: 127 HEDAMQAMSKDRTNMQHRYIELF 149
DA AM K + + +RYIELF
Sbjct: 201 EADAETAMGKHKEKIGNRYIELF 223
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 55 DRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE 112
D+ G GP P E G H V +RGLP+ E ++ F ++ VH+ H +
Sbjct: 36 DQNQGGGGPVP------EDDGNQPHYVRLRGLPWSITEDEIRSFLHGVNILHVHICFHPQ 89
Query: 113 NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
R +GEA + T D +A S+++ + HRYIE F
Sbjct: 90 TKRQTGEAYIRVPTQADRNKAFSRNKQTIGHRYIEFF 126
>gi|449499514|ref|XP_002192774.2| PREDICTED: G-rich sequence factor 1 [Taeniopygia guttata]
Length = 402
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENG-RPSGEADVDFATHEDAM 131
+S P +H VHMRG P +A+ +D+ +FF P+ P + + Y +G +GEADV F +HEDA+
Sbjct: 314 TSSPPQHFVHMRGFPSQASAQDIINFFAPLRPTRILVEYNSGGDATGEADVHFESHEDAV 373
Query: 132 QAMSKDRTNMQHRYIELFLN 151
AM+KD + M+ IELFLN
Sbjct: 374 AAMAKDGSQMECSAIELFLN 393
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDA 130
+ES S V +RGLPF + E D+ADFF + + Y R +GEA V FAT E A
Sbjct: 169 DESQAMSDGVVLLRGLPFTSTEEDIADFFSGLKITDIAFIYRGDRRTGEAFVQFATPEMA 228
Query: 131 MQAMSKDRTNMQHRYIELFLN 151
+A+ + R M RYIE++++
Sbjct: 229 AKALLRHREYMGSRYIEVYVS 249
>gi|390361159|ref|XP_798587.3| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 3
[Strongylocentrotus purpuratus]
Length = 500
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 80 TVHMRGLPFRANERDVADFF-RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDR 138
++HMRGLP++A E D+ FF + P +V I NGR +GEAD DF T E A AM+K +
Sbjct: 316 SIHMRGLPYKATEEDIHQFFGQTASPCNVVIQKVNGRSTGEADADFQTVEAAQAAMTKHK 375
Query: 139 TNMQHRYIELFLNS 152
+ M RYIELFLN+
Sbjct: 376 SEMGPRYIELFLNT 389
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 80 TVHMRGLPFRANERDVADFF-RPVVPVHVD----IHYENGRPSGEADVDFATHEDAMQAM 134
V RGLP+ A D+ FF V+ D +H GRPSGE V F +H+D ++ +
Sbjct: 7 IVRARGLPWSATAEDIVTFFSESVIEGGADGVKFVHLPGGRPSGECFVVFESHDDVLKGL 66
Query: 135 SKDRTNMQHRYIELFLNSSSPRGGVGGSG 163
K+ ++ HRYIE+F + +S V G
Sbjct: 67 KKNNNHIGHRYIEVFRSKNSEMEWVTSRG 95
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSK 136
V +RGLPF D+ DFF+ I +GR +GEA V F + + A A+SK
Sbjct: 106 CVRLRGLPFDCRTDDINDFFKEYQIAEDGITLPTDYDGRSTGEAYVQFVSKDIAEGALSK 165
Query: 137 DRTNMQHRYIELFLNSSS 154
+ NM HRYIE+F ++S
Sbjct: 166 HKANMGHRYIEVFQCNAS 183
>gi|390361163|ref|XP_003729860.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 2
[Strongylocentrotus purpuratus]
Length = 521
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 80 TVHMRGLPFRANERDVADFF-RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDR 138
++HMRGLP++A E D+ FF + P +V I NGR +GEAD DF T E A AM+K +
Sbjct: 331 SIHMRGLPYKATEEDIHQFFGQTASPCNVVIQKVNGRSTGEADADFQTVEAAQAAMTKHK 390
Query: 139 TNMQHRYIELFLNS 152
+ M RYIELFLN+
Sbjct: 391 SEMGPRYIELFLNT 404
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 80 TVHMRGLPFRANERDVADFF-RPVVPVHVD----IHYENGRPSGEADVDFATHEDAMQAM 134
V RGLP+ A D+ FF V+ D +H GRPSGE V F +H+D ++ +
Sbjct: 7 IVRARGLPWSATAEDIVTFFSESVIEGGADGVKFVHLPGGRPSGECFVVFESHDDVLKGL 66
Query: 135 SKDRTNMQHRYIELFLNSSSPRGGVGGSG 163
K+ ++ HRYIE+F + +S V G
Sbjct: 67 KKNNNHIGHRYIEVFRSKNSEMEWVTSRG 95
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSK 136
V +RGLPF D+ DFF+ I +GR +GEA V F + + A A+SK
Sbjct: 106 CVRLRGLPFDCRTDDINDFFKEYQIAEDGITLPTDYDGRSTGEAYVQFVSKDIAEGALSK 165
Query: 137 DRTNMQHRYIELFLNSSS 154
+ NM HRYIE+F ++S
Sbjct: 166 HKANMGHRYIEVFQCNAS 183
>gi|390361161|ref|XP_003729859.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 1
[Strongylocentrotus purpuratus]
Length = 515
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 80 TVHMRGLPFRANERDVADFF-RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDR 138
++HMRGLP++A E D+ FF + P +V I NGR +GEAD DF T E A AM+K +
Sbjct: 331 SIHMRGLPYKATEEDIHQFFGQTASPCNVVIQKVNGRSTGEADADFQTVEAAQAAMTKHK 390
Query: 139 TNMQHRYIELFLNS 152
+ M RYIELFLN+
Sbjct: 391 SEMGPRYIELFLNT 404
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 80 TVHMRGLPFRANERDVADFF-RPVVPVHVD----IHYENGRPSGEADVDFATHEDAMQAM 134
V RGLP+ A D+ FF V+ D +H GRPSGE V F +H+D ++ +
Sbjct: 7 IVRARGLPWSATAEDIVTFFSESVIEGGADGVKFVHLPGGRPSGECFVVFESHDDVLKGL 66
Query: 135 SKDRTNMQHRYIELFLNSSSPRGGVGGSG 163
K+ ++ HRYIE+F + +S V G
Sbjct: 67 KKNNNHIGHRYIEVFRSKNSEMEWVTSRG 95
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSK 136
V +RGLPF D+ DFF+ I +GR +GEA V F + + A A+SK
Sbjct: 106 CVRLRGLPFDCRTDDINDFFKEYQIAEDGITLPTDYDGRSTGEAYVQFVSKDIAEGALSK 165
Query: 137 DRTNMQHRYIELFLNSSS 154
+ NM HRYIE+F ++S
Sbjct: 166 HKANMGHRYIEVFQCNAS 183
>gi|390361165|ref|XP_793087.3| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 2
[Strongylocentrotus purpuratus]
Length = 492
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
++VHMRGLPF E+D+ +FF P +V IH NG+ +G A VDF TH++A AM KD
Sbjct: 325 YSVHMRGLPFSVTEQDIKEFFHGSATPSNVVIHDINGKRNGFAAVDFRTHDEAKAAMKKD 384
Query: 138 RTNMQHRYIELFLN 151
+ N+ RYIELFL+
Sbjct: 385 KNNIGSRYIELFLH 398
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 79 HTVHMRGLPFRANERDVADFFRPV----VPVHVD-IHYENGRPSGEADVDFATHEDAMQA 133
+ + RGLP+ +V DFF P + I +GRPSGE V+F + D QA
Sbjct: 8 YVIRARGLPWSTTAEEVMDFFEDCNILGAPDSIKFIFNSSGRPSGECFVEFDSEGDFQQA 67
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGF 179
M KD+ +Q RYIELF + S V S G GG G +L G
Sbjct: 68 MKKDKNYLQKRYIELFKSKRSEMEWVTNRNSGGADGGEGLVKLRGL 113
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 60 FAGPRPGGRWV-NESSGPS---RHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---E 112
F R WV N +SG + V +RGLPF ++ ++A+FF + I
Sbjct: 83 FKSKRSEMEWVTNRNSGGADGGEGLVKLRGLPFSCSKEEIAEFFSGLTIQANGITLPSDN 142
Query: 113 NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLN--------SSSPRGGVGGSGS 164
+GR +GEA V FA+ E A +A+ K +++M HRYIE+F + ++ RGG GG
Sbjct: 143 DGRRTGEAFVLFASKEIAEKALKKHKSHMGHRYIEVFKSFPDELRRATNPTRGGRGGMNR 202
Query: 165 IGGFGGSGGGRLGGF 179
G + GGR GF
Sbjct: 203 PGPYDRYSGGRGDGF 217
>gi|358342654|dbj|GAA27695.2| heterogeneous nuclear ribonucleoprotein F/H [Clonorchis sinensis]
Length = 295
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 73 SSGPSRHTVH--MRGLPFRANERDVADFFRPVVPVHVDIH-YENGRPSGEADVDFATHED 129
S+G SR H MRGLPF A D+ DFFRP+ P+ V + ++NG+P+G ADV FAT ED
Sbjct: 210 STGASRTQRHIRMRGLPFAATVNDILDFFRPIQPLTVTMRTHKNGKPNGMADVYFATVED 269
Query: 130 AMQAMSKDRTNMQHRYIELF 149
+AM + + M RYIELF
Sbjct: 270 TKEAMKRHKAPMGFRYIELF 289
>gi|82621148|gb|ABB86262.1| unknown [Solanum tuberosum]
Length = 364
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 62/98 (63%), Gaps = 7/98 (7%)
Query: 62 GPRPGGRWVNESSGPSRHT--VHMRGLPFRANERDVADFFR----PVVPVHVDIHYENGR 115
G P R +ES HT + +RGLPF A++ D+ DFF+ P +H+ +E GR
Sbjct: 153 GSVPRARSADESKTLPEHTGVLWLRGLPFSASKEDIIDFFKDFELPEKSIHITATFE-GR 211
Query: 116 PSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
P+GEA V+FA+ +D+ AM+KDR + +RYIELF +SS
Sbjct: 212 PTGEAFVEFASADDSRAAMAKDRMTIGNRYIELFASSS 249
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIH---YENGRPSGEADVDFATHEDAMQAMSK 136
+ MRGLPF A + D+ DFF+ IH +GRP+GEA V+FA+ +DA A++K
Sbjct: 277 ILRMRGLPFSAGKDDIMDFFKDFALTEDAIHVTFLSDGRPTGEAFVEFASTDDAKAALAK 336
Query: 137 DRTNMQHRYIELF 149
DR + RY+ELF
Sbjct: 337 DRMTLGSRYVELF 349
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF +E ++ADF + V V + ++ GR +GEA A+ ++R
Sbjct: 63 VVRLRGLPFDCSETEIADFLHGLDVVDVLLVHKGGRFTGEAYCVLGYPLQVDFALQRNRQ 122
Query: 140 NMQHRYIELF 149
N+ RY+E+F
Sbjct: 123 NIGRRYVEVF 132
>gi|146197828|dbj|BAF57627.1| hnRNP F protein [Dugesia japonica]
Length = 344
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDR 138
++HMRGLP+ A E+DV +FF P+ V I +G+ +GEA+ DF + DA++AM KDR
Sbjct: 269 SIHMRGLPYTATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYSENDAVKAMEKDR 328
Query: 139 TNMQHRYIELFLNSS 153
M RYIELF SS
Sbjct: 329 CKMSWRYIELFRGSS 343
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH--VDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ + D+ FF ++ V + Y + P+GEA V F T EDA A+ +
Sbjct: 96 VRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRH 155
Query: 138 RTNMQHRYIELFLNSSS 154
++ RYIE++ +S +
Sbjct: 156 NQCIRSRYIEIYKSSLT 172
>gi|25013120|gb|AAN71659.1| SD14463p [Drosophila melanogaster]
Length = 359
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
+T+HMRGLP+ + E DV FF P+ P +V I+Y + G SG AD F T+ED+ AM +
Sbjct: 254 YTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRH 313
Query: 138 RTNMQHRYIELFLNSSS 154
R M RYIELF + +
Sbjct: 314 REQMGSRYIELFYDGKT 330
>gi|198454671|ref|XP_002137931.1| GA27490 [Drosophila pseudoobscura pseudoobscura]
gi|198132901|gb|EDY68489.1| GA27490 [Drosophila pseudoobscura pseudoobscura]
Length = 610
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQ 132
S +T+HMRGLP+ + E DV FF PV P +V I+Y + G SG AD F T+ED+
Sbjct: 492 SDVEYYTIHMRGLPYTSFENDVFKFFEPVRPANVRINYNKKGLHSGTADAYFDTYEDSQI 551
Query: 133 AMSKDRTNMQHRYIELFLNSSS 154
AM + R M RYIELF + +
Sbjct: 552 AMKRHREQMGSRYIELFYDGKT 573
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFA 125
E+ G S + +RGLP+ A +++ DF V +H+ +G+ +GEA V+ A
Sbjct: 45 ENVGESPKFIRLRGLPWSATHKEILDFLENVNVTNASQGIHLVTSRVDGKNTGEAYVEVA 104
Query: 126 THEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGF 179
T ED +A ++ +M HRYIE+F +++P+ IGG G + +L G
Sbjct: 105 TQEDVEEARKLNKASMGHRYIEVF--TATPKEAKEAMRKIGGHGNAFVVKLRGL 156
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD------IHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ E+ + +FF + + D + GR +GEA V F + ED QA
Sbjct: 150 VVKLRGLPYAVTEQQIEEFFTGL-EIKTDREGILFVMDRRGRATGEAFVQFESQEDTEQA 208
Query: 134 MSKDRTNMQHRYIELFLNS 152
+ ++R + HRYIE+F +S
Sbjct: 209 LGRNREKIGHRYIEIFRSS 227
>gi|357460387|ref|XP_003600475.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
gi|355489523|gb|AES70726.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
Length = 259
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 65 PGGRWVNESSGPSRHT--VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGE 119
P + +E + HT + +RGLPF AN+ D+ DFF+ V IH GRPSGE
Sbjct: 155 PRAKSYDEGKDSAEHTGVLRLRGLPFSANKDDIMDFFKEYVLSEDSIHIVMNSEGRPSGE 214
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
A V+F +D+ AM+KDR + RYIELF
Sbjct: 215 AYVEFENADDSKAAMAKDRMTLGSRYIELF 244
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 63 PRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADV 122
P P G +V++ P V +RGLPF E DVA+FF + V V ++ G+ SGE
Sbjct: 42 PSPYG-YVSQPPPPPFPVVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFSGEGFC 100
Query: 123 DFATHEDAMQAMSKDRTNMQHRYIELF 149
A+ ++R N+ RY+E+F
Sbjct: 101 VLGYPLQVDFALQRNRQNIGRRYVEVF 127
>gi|195445396|ref|XP_002070305.1| GK11105 [Drosophila willistoni]
gi|194166390|gb|EDW81291.1| GK11105 [Drosophila willistoni]
Length = 642
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
+T+HMRGLP+ + E DV FF P+ P +V I+Y + G SG AD F T+ED+ AM +
Sbjct: 522 YTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQLAMKRH 581
Query: 138 RTNMQHRYIELFLNSSS 154
R M RYIELF + S
Sbjct: 582 REQMGSRYIELFYDGKS 598
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 66 GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGE 119
G R E+ G S + +RGLP+ A +++ DF V +H+ +G+ +GE
Sbjct: 41 GARVKIENVGESPKFIRLRGLPWSATHKEILDFLENVNVTNGSQGIHLVTSRVDGKNTGE 100
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGF 179
A V+ A+ ED +A ++ +M HRYIE+F +++P+ IGG + +L G
Sbjct: 101 AYVEVASQEDVEEARKLNKASMGHRYIEVF--TATPKEAKEAMRKIGGHANAFVVKLRGL 158
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD------IHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ E+ + +FF + + D + GR +GEA V F + +D QA
Sbjct: 152 VVKLRGLPYAVTEQQIEEFFTGL-EIKTDREGILFVTDRRGRATGEAFVQFESQDDTEQA 210
Query: 134 MSKDRTNMQHRYIELFLNSSSP 155
+ ++R + HRYIE+F +S +
Sbjct: 211 LGRNREKIGHRYIEIFRSSIAE 232
>gi|195329730|ref|XP_002031563.1| GM26067 [Drosophila sechellia]
gi|194120506|gb|EDW42549.1| GM26067 [Drosophila sechellia]
Length = 563
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
+T+HMRGLP+ + E DV FF P+ P +V I+Y + G SG AD F T+ED+ AM +
Sbjct: 457 YTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRH 516
Query: 138 RTNMQHRYIELFLNSSS 154
R M RYIELF + +
Sbjct: 517 REQMGSRYIELFYDGKT 533
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFA 125
E+ G S V +RGLP+ A +++ DF V +H+ +G+ +GEA V+ A
Sbjct: 42 ENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVA 101
Query: 126 THEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGF 179
+ ED +A ++ +M HRYIE+F +++P+ I G G + +L G
Sbjct: 102 SQEDVEEARKLNKASMGHRYIEVF--TATPKEAKEAMRKISGHGTAFVVKLRGL 153
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 61 AGPRPGGRWVNESSGP-SRHTVHMRGLPFRANERDVADFFRPVVPVHVD------IHYEN 113
A P+ + + SG + V +RGLP+ E+ + +FF + + D +
Sbjct: 127 ATPKEAKEAMRKISGHGTAFVVKLRGLPYAVTEQQIEEFFSGL-EIKTDREGILFVMDRR 185
Query: 114 GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
GR +GEA V F + +D QA+ ++R + HRYIE+F +S
Sbjct: 186 GRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSS 224
>gi|313233607|emb|CBY09778.1| unnamed protein product [Oikopleura dioica]
Length = 425
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENG---RPSGEADVDFATHEDAM 131
G RH V MRG+PFRA E V FF + + +E G RP+G A V F THEDA
Sbjct: 231 GVYRHVVQMRGIPFRATEEQVRSFFGLDFEISA-VQFEIGADHRPTGRASVAFPTHEDAE 289
Query: 132 QAMSKDRTNMQHRYIELFLNSS--SPRGGVGGSGS 164
+AM KD+ M RYIEL + SS +P G+G +G
Sbjct: 290 KAMKKDKECMGKRYIELMILSSQNTPIDGIGPNGE 324
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGR--PSGEADVDFATHEDAMQ 132
G +HMRGLPFR + RD+ FF P +P+ +DIH E G P+G V F + ++
Sbjct: 323 GEYLFMIHMRGLPFRVHARDIVSFFDP-IPI-LDIHLEMGPKGPTGAGQVAFFSAQERSD 380
Query: 133 AMSKDRTNMQHRYIELF 149
A+ +D+ N+ RYIELF
Sbjct: 381 ALKRDKENIGDRYIELF 397
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPV---HVDIHY---ENGRPSGEADVDFATHEDAMQA 133
+ +RGLP+ +V +FF +V + +H+ + GRP+GEA ++ T D +A
Sbjct: 21 VIRLRGLPYSCCGAEVVEFFADIVDIVNGEAGVHFTLTKEGRPNGEAYIELETDADVEKA 80
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGV 159
M KDRT +Q RYIE+F ++ V
Sbjct: 81 MIKDRTQLQDRYIEIFKATTEEMDYV 106
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPV-VPVH--VDIHYENGRPSGEADVDFATHE 128
+++ P + V +RG+P++ + F R + +P H V + GR +GEA V +HE
Sbjct: 113 QANQPWENVVKLRGVPYKCTSDRIRQFLRELDIPAHGVVMVTDARGRNTGEAFVQLKSHE 172
Query: 129 DAMQAMSKDRTNMQHRYIELF 149
A QA+ K + + RYIE+F
Sbjct: 173 HAEQALLKHKECIDRRYIEVF 193
>gi|449280564|gb|EMC87832.1| G-rich sequence factor 1, partial [Columba livia]
Length = 331
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 11/111 (9%)
Query: 52 RWNDRPGGFA----------GPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRP 101
RW+D A RPG +ES H VHMRG P + + +D+ +FF P
Sbjct: 212 RWSDTASSDAEGENQVCREQTERPGHISESESVSSPLHFVHMRGFPAQTSAQDIINFFAP 271
Query: 102 VVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLN 151
+ P + + Y +G +GEADV F + EDA+ AM+K+ + +Q IELFLN
Sbjct: 272 LKPTRIMVEYNCHGDATGEADVHFESREDAVAAMAKEGSRLQCSAIELFLN 322
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDA 130
+ES + V +RGLPF + E D+ADFF + + Y R +GEA V FA + A
Sbjct: 99 DESQAINDGVVMLRGLPFSSTEDDIADFFSGLKITDIAFVYRGERRTGEAFVQFAAPDMA 158
Query: 131 MQAMSKDRTNMQHRYIELFLN 151
+A+S+ R M +RYIE++++
Sbjct: 159 AKALSRHREYMGNRYIEVYVS 179
>gi|195571637|ref|XP_002103809.1| GD20630 [Drosophila simulans]
gi|194199736|gb|EDX13312.1| GD20630 [Drosophila simulans]
Length = 587
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
+T+HMRGLP+ + E DV FF P+ P +V I+Y + G SG AD F T+ED+ AM +
Sbjct: 481 YTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRH 540
Query: 138 RTNMQHRYIELFLNSSS 154
R M RYIELF + +
Sbjct: 541 REQMGSRYIELFYDGKT 557
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFA 125
E+ G S V +RGLP+ A +++ DF V +H+ +G+ +GEA V+ A
Sbjct: 42 ENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVA 101
Query: 126 THEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGF 179
+ ED +A ++ +M HRYIE+F +++P+ I G G + +L G
Sbjct: 102 SQEDVEEARKLNKASMGHRYIEVF--TATPKEAKEAMRKISGHGTAFVVKLRGL 153
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 61 AGPRPGGRWVNESSGP-SRHTVHMRGLPFRANERDVADFFRPVVPVHVD------IHYEN 113
A P+ + + SG + V +RGLP+ E+ + +FF + + D +
Sbjct: 127 ATPKEAKEAMRKISGHGTAFVVKLRGLPYAVTEQQIEEFFSGL-EIKTDREGILFVMDRR 185
Query: 114 GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
GR +GEA V F + +D QA+ ++R + HRYIE+F +S
Sbjct: 186 GRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSS 224
>gi|24646105|ref|NP_650120.1| glorund, isoform A [Drosophila melanogaster]
gi|24646107|ref|NP_731639.1| glorund, isoform B [Drosophila melanogaster]
gi|7299517|gb|AAF54704.1| glorund, isoform A [Drosophila melanogaster]
gi|7299518|gb|AAF54705.1| glorund, isoform B [Drosophila melanogaster]
gi|19528177|gb|AAL90203.1| AT27789p [Drosophila melanogaster]
Length = 586
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
+T+HMRGLP+ + E DV FF P+ P +V I+Y + G SG AD F T+ED+ AM +
Sbjct: 481 YTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRH 540
Query: 138 RTNMQHRYIELFLN 151
R M RYIELF +
Sbjct: 541 REQMGSRYIELFYD 554
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFA 125
E+ G S V +RGLP+ A +++ DF V +H+ +G+ +GEA V+ A
Sbjct: 42 ENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVA 101
Query: 126 THEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGF 179
+ ED +A ++ +M HRYIE+F +++P+ I G G + +L G
Sbjct: 102 SQEDVEEARKLNKASMGHRYIEVF--TATPKEAKEAMRKISGHGTAFVVKLRGL 153
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 61 AGPRPGGRWVNESSGP-SRHTVHMRGLPFRANERDVADFFRPVVPVHVD------IHYEN 113
A P+ + + SG + V +RGLP+ E+ + +FF + + D +
Sbjct: 127 ATPKEAKEAMRKISGHGTAFVVKLRGLPYAVTEQQIEEFFSGL-DIKTDREGILFVMDRR 185
Query: 114 GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
GR +GEA V F + +D QA+ ++R + HRYIE+F +S
Sbjct: 186 GRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSS 224
>gi|194901932|ref|XP_001980505.1| GG17187 [Drosophila erecta]
gi|190652208|gb|EDV49463.1| GG17187 [Drosophila erecta]
Length = 595
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
+T+HMRGLP+ + E DV FF P+ P +V I+Y + G SG AD F T+ED+ AM +
Sbjct: 481 YTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRH 540
Query: 138 RTNMQHRYIELFLNSSS 154
R M RYIELF + +
Sbjct: 541 REQMGSRYIELFYDGKT 557
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFA 125
E+ G S V +RGLP+ A +++ DF V +H+ +G+ +GEA V+ A
Sbjct: 42 ENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVA 101
Query: 126 THEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGF 179
+ ED +A ++ +M HRYIE+F +++P+ I G G + +L G
Sbjct: 102 SQEDVEEARKLNKASMGHRYIEVF--TATPKEAKEAMRKISGHGTAFVVKLRGL 153
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 61 AGPRPGGRWVNESSGP-SRHTVHMRGLPFRANERDVADFFRPVVPVHVD------IHYEN 113
A P+ + + SG + V +RGLP+ E+ + +FF + + D +
Sbjct: 127 ATPKEAKEAMRKISGHGTAFVVKLRGLPYAVTEQQIEEFFSGL-EIKTDREGILFVMDRR 185
Query: 114 GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSP 155
GR +GEA V F + +D QA+ ++R + HRYIE+F +S +
Sbjct: 186 GRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAE 227
>gi|195501785|ref|XP_002097942.1| GE10080 [Drosophila yakuba]
gi|194184043|gb|EDW97654.1| GE10080 [Drosophila yakuba]
Length = 597
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
+T+HMRGLP+ + E DV FF P+ P +V I+Y + G SG AD F T+ED+ AM +
Sbjct: 484 YTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRH 543
Query: 138 RTNMQHRYIELFLNSSS 154
R M RYIELF + +
Sbjct: 544 REQMGSRYIELFYDGKT 560
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFA 125
E+ G S V +RGLP+ A +++ DF V +H+ +G+ +GEA V+ A
Sbjct: 43 ENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSSGIHLVTSRVDGKNTGEAYVEVA 102
Query: 126 THEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGF 179
+ ED +A ++ +M HRYIE+F +++P+ I G G + +L G
Sbjct: 103 SQEDVEEARKLNKASMGHRYIEVF--TATPKEAKEAMRKISGHGTAFVVKLRGL 154
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 61 AGPRPGGRWVNESSGP-SRHTVHMRGLPFRANERDVADFFRPVVPVHVD------IHYEN 113
A P+ + + SG + V +RGLP+ E+ + +FF + + D +
Sbjct: 128 ATPKEAKEAMRKISGHGTAFVVKLRGLPYAVTEQQIEEFFSGL-EIKTDREGILFVMDRR 186
Query: 114 GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSP 155
GR +GEA V F + +D QA+ ++R + HRYIE+F +S +
Sbjct: 187 GRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAE 228
>gi|341882686|gb|EGT38621.1| hypothetical protein CAEBREN_04314 [Caenorhabditis brenneri]
Length = 591
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
S+ P V +RGLPF A E+D+ +FF + V GRP+GEA V+F T EDA +
Sbjct: 59 SAPPKSQYVRLRGLPFNATEKDIHEFFNGLTIKRVKFVCTTGRPNGEAYVEFETKEDAGK 118
Query: 133 AMSKDRTNMQHRYIELF 149
M DR M RYIE+F
Sbjct: 119 GMENDRKEMSSRYIEIF 135
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-----ENGRPSGEADVDFATHED 129
G H V +RG+P+ E DV FF + P + RPSGEA V FAT
Sbjct: 154 GEENHVVRLRGIPWSCKEEDVLQFFAGLDPPPAETVIGGTGGPKSRPSGEAFVRFATQAA 213
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGG 167
A +AM + +M RY+E+F++S G GS G
Sbjct: 214 AEKAMEYNNRHMGTRYVEVFMSSMVEFNRAKGGGSAAG 251
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRT 139
++MRGLP+ A++ V FF P+ + + E GRPSG+A +F + D +S++
Sbjct: 321 IYMRGLPYDADQYAVEAFFSPLRCHSIKLGVNETGRPSGDAIAEFDSFGDLQAGLSRNNQ 380
Query: 140 NMQHRYIELFLNSSSP 155
M RY+ELF +P
Sbjct: 381 RMGRRYVELFDTRGAP 396
>gi|341899985|gb|EGT55920.1| hypothetical protein CAEBREN_28420 [Caenorhabditis brenneri]
Length = 591
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
S+ P V +RGLPF A E+D+ +FF + V GRP+GEA V+F T EDA +
Sbjct: 59 SAPPKSQYVRLRGLPFNATEKDIHEFFNGLTIKRVKFVCTTGRPNGEAYVEFETKEDAGK 118
Query: 133 AMSKDRTNMQHRYIELF 149
M DR M RYIE+F
Sbjct: 119 GMENDRKEMSSRYIEIF 135
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-----ENGRPSGEADVDFATHED 129
G H V +RG+P+ E DV FF + P + RPSGEA V FAT
Sbjct: 154 GEENHVVRLRGIPWSCKEEDVLQFFAGLDPPPAETVIGGTGGPKSRPSGEAFVRFATQAA 213
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGG 167
A +AM + +M RY+E+F++S G GS G
Sbjct: 214 AEKAMEYNNRHMGTRYVEVFMSSMVEFNRAKGGGSAAG 251
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRT 139
++MRGLP+ A++ V FF P+ + + E GRPSG+A +F + D +S++
Sbjct: 321 IYMRGLPYDADQYAVEAFFSPLRCHSIKLGVNETGRPSGDAIAEFDSFGDLQAGLSRNNQ 380
Query: 140 NMQHRYIELFLNSSSP 155
M RY+ELF +P
Sbjct: 381 RMGRRYVELFDTRGAP 396
>gi|147832351|emb|CAN73277.1| hypothetical protein VITISV_031233 [Vitis vinifera]
Length = 260
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 7/119 (5%)
Query: 37 GGPPRGGFRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHT--VHMRGLPFRANERD 94
G R + N+ + R G P + +E + HT + +RGLPF A++ D
Sbjct: 128 GRSKRQEYYKAIANEVSDTRGGSPRRTAPKAKSNDEGKESAEHTGVLRLRGLPFSASKED 187
Query: 95 VADFFRPVV----PVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+ DFF+ V +H+ ++ E GRP+GEA V+F ED+ AM+KDR + RYIELF
Sbjct: 188 IMDFFKDFVLSEDSIHMTVNSE-GRPTGEAFVEFTNAEDSKAAMAKDRMTLGSRYIELF 245
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 52 RWNDRPGGFAGPRPGGRWVNESSGPSRH-------TVHMRGLPFRANERDVADFFRPVVP 104
R D+ F G PG ++ +S S V +RGLPF +E DVA+FF +
Sbjct: 59 RITDQGSSFYGGSPGSNFMYNASPYSYIGQPPPFPVVRLRGLPFDCSEADVAEFFHSLDI 118
Query: 105 VHVDIHYENGR 115
V V ++NGR
Sbjct: 119 VDVLFVHKNGR 129
>gi|225435437|ref|XP_002285426.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Vitis
vinifera]
Length = 258
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 7/91 (7%)
Query: 65 PGGRWVNESSGPSRHT--VHMRGLPFRANERDVADFFRPVV----PVHVDIHYENGRPSG 118
P + +E + HT + +RGLPF A++ D+ DFF+ V +H+ ++ E GRP+G
Sbjct: 154 PKAKSNDEGKESAEHTGVLRLRGLPFSASKEDIMDFFKDFVLSEDSIHMTVNSE-GRPTG 212
Query: 119 EADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
EA V+F ED+ AM+KDR + RYIELF
Sbjct: 213 EAFVEFTNAEDSKAAMAKDRMTLGSRYIELF 243
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 52 RWNDRPGGFAGPRPGGRWVNESSGPSRH-------TVHMRGLPFRANERDVADFFRPVVP 104
R D+ F G PG ++ +S S V +RGLPF +E DVA+FF +
Sbjct: 22 RITDQGSSFYGGSPGSNFMYNASPYSYIGQPPPFPVVRLRGLPFDCSEADVAEFFHSLDI 81
Query: 105 VHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
V V ++NGR +GEA A+ ++R NM RY+E+F
Sbjct: 82 VDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNRQNMGRRYVEVF 126
>gi|255544880|ref|XP_002513501.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
gi|223547409|gb|EEF48904.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
Length = 260
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 7/94 (7%)
Query: 65 PGGRWVNESSGPSRHT--VHMRGLPFRANERDVADFFRPVV----PVHVDIHYENGRPSG 118
P + +E + HT + +RGLPF A + D+ +FF+ V VH+ ++ E GRP+G
Sbjct: 156 PRAKSYDEGKDSAEHTGVLRLRGLPFSAGKDDIMEFFKDFVLSEDSVHITMNSE-GRPTG 214
Query: 119 EADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
EA V+FA+ ED+ AM+KDR + RYIELF +S
Sbjct: 215 EAFVEFASAEDSKAAMAKDRMTLGSRYIELFPSS 248
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF E DVA+FF + V V ++ G+ +GEA A+ K+R
Sbjct: 60 VVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFTGEAFCVLGCPLQVDFALQKNRQ 119
Query: 140 NMQHRYIELF 149
NM RY+E+F
Sbjct: 120 NMGRRYVEVF 129
>gi|224104153|ref|XP_002313339.1| predicted protein [Populus trichocarpa]
gi|222849747|gb|EEE87294.1| predicted protein [Populus trichocarpa]
Length = 253
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 7/91 (7%)
Query: 65 PGGRWVNESSGPSRHT--VHMRGLPFRANERDVADFFRPVV----PVHVDIHYENGRPSG 118
P + +E + HT + +RGLPF A++ D+ +FF+ V +H+ ++ E GRP+G
Sbjct: 149 PRAKSYDEGKDSAEHTGVLRLRGLPFSASKDDIMEFFKDFVLSEDSIHITMNSE-GRPTG 207
Query: 119 EADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
EA V+FA ED+ AM+KDR + RYIELF
Sbjct: 208 EAFVEFANAEDSKAAMAKDRMTLGSRYIELF 238
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF E DVA+FF + V V ++ G+ SGEA A+ K+R
Sbjct: 53 VVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFSGEAFCVLGYPLQVDFALQKNRQ 112
Query: 140 NMQHRYIELF 149
NM RY+E+F
Sbjct: 113 NMGRRYVEVF 122
>gi|297746312|emb|CBI16368.3| unnamed protein product [Vitis vinifera]
Length = 235
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVV----PVHVDIHYENGRPSGEADVDFAT 126
NE S + +RGLPF A++ D+ DFF+ V +H+ ++ E GRP+GEA V+F
Sbjct: 139 NEVSDTRGGVLRLRGLPFSASKEDIMDFFKDFVLSEDSIHMTVNSE-GRPTGEAFVEFTN 197
Query: 127 HEDAMQAMSKDRTNMQHRYIELF 149
ED+ AM+KDR + RYIELF
Sbjct: 198 AEDSKAAMAKDRMTLGSRYIELF 220
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 52 RWNDRPGGFAGPRPGGRWVNESSGPSRH-------TVHMRGLPFRANERDVADFFRPVVP 104
R D+ F G PG ++ +S S V +RGLPF +E DVA+FF +
Sbjct: 22 RITDQGSSFYGGSPGSNFMYNASPYSYIGQPPPFPVVRLRGLPFDCSEADVAEFFHSLDI 81
Query: 105 VHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
V V ++NGR +GEA A+ ++R NM RY+E+F
Sbjct: 82 VDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNRQNMGRRYVEVF 126
>gi|395730677|ref|XP_003775769.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein F-like [Pongo abelii]
Length = 352
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 5/74 (6%)
Query: 84 RGLPFRANERDVADFFRPVVPVHVDIHYENG---RPSGEADVDFATHEDAMQAMSKDRTN 140
GLP++A + D+ + F P P +H E G R +G+ADV FAT E+A+ A S+DR +
Sbjct: 237 EGLPYKATKSDIYNLFSP--PNLARVHTEMGPHERVTGKADVKFATQEEAVAATSRDRVS 294
Query: 141 MQHRYIELFLNSSS 154
M HRY+ELFLN ++
Sbjct: 295 MWHRYMELFLNLTT 308
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 110 HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
H+ GR SGEA V+ E+ A+ KDR +M HR I +F
Sbjct: 47 HHRXGRQSGEAFVELGXEENIKMALEKDRESMGHRRIAVF 86
>gi|324507711|gb|ADY43264.1| Heterogeneous nuclear ribonucleoprotein F [Ascaris suum]
Length = 435
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRT 139
V+MRGLP+ AN D+ DFF+P+ V + + Y E+ RPSG+A V F+T +A A+S+++
Sbjct: 277 VYMRGLPYNANALDIEDFFKPLNCVEIRLGYNEDRRPSGDAYVLFSTMAEARDALSRNKK 336
Query: 140 NMQHRYIELFLNSSSP 155
++ RYIELF ++ P
Sbjct: 337 SIGTRYIELFSGANVP 352
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKD 137
+ V +RG+PF A D+ +FF + V I E GRPSGEA V A + A A+ ++
Sbjct: 111 YVVRLRGIPFSATVADIKEFFSGLDVADVVIDKEPGGRPSGEAFVRLANKQHAEMALERN 170
Query: 138 RTNMQHRYIELFLNS 152
+ NM RY+E+F +S
Sbjct: 171 KKNMGTRYVEVFRSS 185
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQA 133
PS + V +RGLPF A E DV +F + + V GR SGE V+ +A
Sbjct: 5 APSNY-VRLRGLPFSAKEDDVRNFLQGLYVRSVTFTLTATGRASGECYVELTDAAAVEEA 63
Query: 134 MSKDRTNMQHRYIELFLNSSS 154
D+ M RYIE+F S S
Sbjct: 64 KKFDKKEMSSRYIEVFSVSES 84
>gi|195108109|ref|XP_001998635.1| GI24079 [Drosophila mojavensis]
gi|193915229|gb|EDW14096.1| GI24079 [Drosophila mojavensis]
Length = 605
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
+T+HMRGLP+ + E DV FF P+ P +V I+Y + G SG AD F T++D+ AM +
Sbjct: 485 YTIHMRGLPYNSFENDVFKFFDPIRPANVRINYNKKGLHSGTADAYFDTYDDSQLAMKRH 544
Query: 138 RTNMQHRYIELFLNSSS 154
R M RYIELF + +
Sbjct: 545 REQMGSRYIELFYDGKT 561
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
S G S + +RGLP+ A +++ DF V +H+ +G+ +GEA V+ A+
Sbjct: 53 SVGESPKFIRLRGLPWSATHKEILDFLVNVEVLNGSQGIHLVTSRLDGKNTGEAYVEVAS 112
Query: 127 HEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGF 179
ED +A ++ +M HRYIE+F+ ++P+ GG G + +L G
Sbjct: 113 QEDVEEARKLNKASMGHRYIEVFV--ATPKEAKEAMRKTGGHGHAFVVKLRGL 163
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD------IHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ E+ + +FF + + D + GR +GEA V F + +D QA
Sbjct: 157 VVKLRGLPYAVTEQQIEEFFTGL-EIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQA 215
Query: 134 MSKDRTNMQHRYIELFLNSSSP 155
+ ++R + HRYIE+F +S +
Sbjct: 216 LGRNREKIGHRYIEIFRSSIAE 237
>gi|312081197|ref|XP_003142925.1| RNA binding protein [Loa loa]
gi|307761913|gb|EFO21147.1| RNA binding protein [Loa loa]
Length = 547
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRT 139
V+MRGLP+ AN D+ DFF+P+ V + + + E+ RPSG+A V F T +A AMS+++
Sbjct: 332 VYMRGLPYSANALDIEDFFKPLNCVEIQLGFNEDRRPSGDACVIFGTLAEARDAMSRNKQ 391
Query: 140 NMQHRYIELFLNSSSP 155
+ +RYIELF + P
Sbjct: 392 CIGNRYIELFTAADVP 407
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAM 134
P V +RG+PF A DV +FF + V I E GRPSGEA V FA+ + A A+
Sbjct: 156 PYNFVVRLRGIPFSATNDDVKEFFTGLEVADVVIDKELGGRPSGEAFVRFASKQHAEMAL 215
Query: 135 SKDRTNMQHRYIELFLNS 152
++R NM RY+E+F +S
Sbjct: 216 ERNRNNMGSRYVEVFRSS 233
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLPF A E DV F + V + GR SGE V+ A +A D+
Sbjct: 63 IRLRGLPFSAKEDDVRAFLEGLEVRSVTFTLTSMGRASGECYVELVDKAAAEEAKRFDKQ 122
Query: 140 NMQHRYIELF 149
M +RYIE+F
Sbjct: 123 EMNNRYIEVF 132
>gi|449666027|ref|XP_002162990.2| PREDICTED: probable RNA-binding protein 19-like [Hydra
magnipapillata]
Length = 914
Score = 69.7 bits (169), Expect = 9e-10, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 50/73 (68%), Gaps = 5/73 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSK 136
TV MRG+PF+ +E++V +FF+P++ DI + ++G+ SG A VDF T ED A+ K
Sbjct: 306 TVKMRGIPFKCSEKEVIEFFKPLIID--DIRFPKNKDGKSSGYAFVDFKTIEDVKSALKK 363
Query: 137 DRTNMQHRYIELF 149
D+ +Q RYIELF
Sbjct: 364 DKQKIQGRYIELF 376
>gi|326918872|ref|XP_003205709.1| PREDICTED: g-rich sequence factor 1-like, partial [Meleagris
gallopavo]
Length = 343
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 12/119 (10%)
Query: 46 GGFNNDRWNDRPGGFAGPRPG--GRWVNESSGPSRHT---------VHMRGLPFRANERD 94
G +R +D G + R ESSGPS T VH+RG P + + +D
Sbjct: 217 GSTAEERESDYTRGSSAEREKEVASEAAESSGPSSQTGSILSSLRAVHVRGFPTQVSAQD 276
Query: 95 VADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ DFF P+ P + I Y +G +GEADV F +++DA+ AM+K+R +Q +E+FL
Sbjct: 277 IIDFFAPLRPRRILIEYNSDGVATGEADVHFESYDDAVTAMAKERAQLQFGAVEVFLKE 335
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAM 131
ES S V +RGLPF + E D+ADFF + + Y R +GEA V FA E
Sbjct: 115 ESQVMSDGVVLLRGLPFDSTEDDIADFFAGLRITDITFVYRGERKTGEAYVQFAAPEMVA 174
Query: 132 QAMSKDRTNMQHRYIELFLNS 152
+A+ + + M++RYIE+++++
Sbjct: 175 KALLRHKEYMENRYIEVYIST 195
>gi|268536900|ref|XP_002633585.1| Hypothetical protein CBG05462 [Caenorhabditis briggsae]
Length = 588
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V +RGLPF A E+D+ +FF ++ V GRP+GEA V+FA+ +DA + M DR
Sbjct: 65 VRLRGLPFNATEKDIHEFFTGLIVKRVKFVCTTGRPNGEAYVEFASTDDAGRGMECDRKE 124
Query: 141 MQHRYIELF 149
M +RYIE+F
Sbjct: 125 MSNRYIEIF 133
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPVV--PVHVDIHYENG---RPSGEADVDFATHED 129
G H V +RG+P+ E DV FF+ + P + I +G RPSGEA V F T +
Sbjct: 152 GEENHVVRLRGVPWSCKEEDVKQFFQGLEPPPAEIVIGGTSGPRPRPSGEAFVRF-TSQA 210
Query: 130 AMQAMSKDRTNMQHRYIELFLNS 152
A +AM + +M RY+E+F++S
Sbjct: 211 AAKAMEYNNMHMGTRYVEVFMSS 233
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 81 VHMRGLPFRANERDVADFFRP--VVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDR 138
++MRGLP+ A+ + FF P V + + I+ E GR SG+A +F +++D ++++
Sbjct: 329 IYMRGLPYDADHHAIEAFFSPLRVHSIKLGIN-EAGRSSGDAIAEFDSYQDLQSGLARNN 387
Query: 139 TNMQHRYIELFLNSSSP 155
M RY+ELF +P
Sbjct: 388 QRMGRRYVELFDTRGAP 404
>gi|388504640|gb|AFK40386.1| unknown [Medicago truncatula]
Length = 259
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 65 PGGRWVNESSGPSRHT--VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGE 119
P + +E + HT + +RGLPF AN+ D+ DFF+ V IH GRP GE
Sbjct: 155 PRAKPYDEGKDSAEHTGVLRLRGLPFFANKDDIMDFFKEYVLSEDSIHIVMNSEGRPFGE 214
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
A V+F +D+ AM+KDR + RYIELF
Sbjct: 215 AYVEFENADDSKAAMAKDRMTLGSRYIELF 244
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 63 PRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADV 122
P P G +V++ P V +RGLPF E DVA+FF + V V ++ G+ SGE
Sbjct: 42 PSPYG-YVSQPPPPPFPVVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFSGEGFC 100
Query: 123 DFATHEDAMQAMSKDRTNMQHRYIELF 149
A+ ++R N+ RY+E+F
Sbjct: 101 VLGYPLQVDFALQRNRQNIGRRYVEVF 127
>gi|402589318|gb|EJW83250.1| hypothetical protein WUBG_05840 [Wuchereria bancrofti]
Length = 451
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRT 139
++MRGLP+ AN D+ DFF+P+ V + + + E+ RPSG+A V F T +A AMS+++
Sbjct: 237 IYMRGLPYSANALDIEDFFKPLNCVEIQLGFNEDRRPSGDACVIFGTVGEARDAMSRNKQ 296
Query: 140 NMQHRYIELFLNSSSP 155
+ +RYIELF + P
Sbjct: 297 CIGNRYIELFTAADVP 312
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDA 130
+ P V +RG+PF A DV +FF + V I E GRPSGEA V FA+ + A
Sbjct: 57 DQETPYNFVVRLRGIPFSATNDDVKEFFSGLEVADVVIDKELGGRPSGEAFVRFASKQHA 116
Query: 131 MQAMSKDRTNMQHRYIELFLNS 152
A+ ++R NM RY+E+F +S
Sbjct: 117 EMALERNRNNMGSRYVEVFRSS 138
>gi|170577075|ref|XP_001893871.1| RNA binding protein [Brugia malayi]
gi|158599846|gb|EDP37285.1| RNA binding protein, putative [Brugia malayi]
Length = 519
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRT 139
++MRGLP+ AN D+ DFF+P+ V + + + E+ RPSG+A V F T +A AMS+++
Sbjct: 305 IYMRGLPYSANALDIEDFFKPLNCVEIQLGFNEDRRPSGDACVIFGTVGEARDAMSRNKQ 364
Query: 140 NMQHRYIELFLNSSSP 155
+ +RYIELF + P
Sbjct: 365 CIGNRYIELFTAADVP 380
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAM 134
P V +RG+PF A DV +FF + V I E GRPSGEA V FA+ + A A+
Sbjct: 129 PYNFVVRLRGIPFSATNNDVKEFFSGLEVADVVIDKELGGRPSGEAFVRFASKQHAEMAL 188
Query: 135 SKDRTNMQHRYIELFLNS 152
++R NM RY+E+F +S
Sbjct: 189 ERNRNNMGSRYVEVFRSS 206
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLPF A E DV F + V + GR SGE V+ A +A D+
Sbjct: 56 IRLRGLPFSAKEDDVRAFLEGLEVKSVTFTLTSMGRASGECYVELVDKVAAEEAKRFDKQ 115
Query: 140 NMQHRYIE 147
M +RYIE
Sbjct: 116 EMNNRYIE 123
>gi|356527218|ref|XP_003532209.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Glycine
max]
Length = 260
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 7/89 (7%)
Query: 67 GRWVNESSGPSRHT--VHMRGLPFRANERDVADFFR----PVVPVHVDIHYENGRPSGEA 120
+ +E + HT + +RGLPF A++ D+ +FF+ P +H+ ++ E GRPSGEA
Sbjct: 158 AKSYDEGKDSAEHTGVLRLRGLPFSASKDDIMEFFKDFGLPEDSIHIIMNSE-GRPSGEA 216
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+FA+ ED+ AM KDR + RYIELF
Sbjct: 217 YAEFASAEDSKAAMVKDRMTLGSRYIELF 245
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 63 PRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADV 122
P P G +V++ P V +RGLPF E DVA+FF + V V ++ G+ +GE
Sbjct: 43 PSPYG-YVSQPPPPPFPVVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFTGEGFC 101
Query: 123 DFATHEDAMQAMSKDRTNMQHRYIELF 149
A+ ++R NM RY+E+F
Sbjct: 102 VLGYPLQVDFALQRNRQNMGRRYVEVF 128
>gi|224059562|ref|XP_002299908.1| predicted protein [Populus trichocarpa]
gi|222847166|gb|EEE84713.1| predicted protein [Populus trichocarpa]
Length = 253
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 7/92 (7%)
Query: 67 GRWVNESSGPSRHT--VHMRGLPFRANERDVADFFRPVVP----VHVDIHYENGRPSGEA 120
+ +E + HT + +RGLPF A + D+ +FF+ V +H+ ++ E GRP+GEA
Sbjct: 151 AKSYDEGKDLAEHTGVLRLRGLPFSAGKDDIMEFFKDFVLSEDLIHITMNSE-GRPTGEA 209
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
V+FA ED+ AM+KDR + RYIELF +S
Sbjct: 210 FVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 241
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF E DVA+FFR + V V ++ G+ +GEA A+ K+R
Sbjct: 53 VVRLRGLPFDCTETDVAEFFRGLDIVDVLFVHKGGKFTGEAFCVLGYPLQVDFALQKNRQ 112
Query: 140 NMQHRYIELF 149
NM RY+E+F
Sbjct: 113 NMGRRYVEVF 122
>gi|118090272|ref|XP_420600.2| PREDICTED: G-rich sequence factor 1 [Gallus gallus]
Length = 410
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDR 138
TVH+RG P + + +D+ DFF P+ P + I Y +G +GEADV F +++DA+ AM+K+R
Sbjct: 329 TVHVRGFPPQVSAQDIVDFFAPLKPTRILIEYNSDGVATGEADVHFESYDDAVAAMAKER 388
Query: 139 TNMQHRYIELFLNS 152
+Q +E+FL
Sbjct: 389 AQLQFGTVEVFLKE 402
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAM 131
ES S V +RGLPF + E D+ADFF + + Y R +GEA V FA E
Sbjct: 182 ESEVMSDGVVLLRGLPFDSTEDDIADFFAGLRITDMTFVYRGERKTGEAYVQFAAPEMVA 241
Query: 132 QAMSKDRTNMQHRYIELFLNSS 153
+A+ + + M++RYIE+++++
Sbjct: 242 KALLRHKEYMENRYIEVYISTK 263
>gi|308477529|ref|XP_003100978.1| CRE-HRPF-2 protein [Caenorhabditis remanei]
gi|308264322|gb|EFP08275.1| CRE-HRPF-2 protein [Caenorhabditis remanei]
Length = 621
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 73 SSGPSR--HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDA 130
SSGP V +RGLPF A E+D+ +FF + V GRP+GEA V+F T +DA
Sbjct: 66 SSGPPLKGQYVRLRGLPFNATEKDIQEFFSGLGVKRVKFVCTTGRPNGEAYVEFKTQDDA 125
Query: 131 MQAMSKDRTNMQHRYIE 147
+AM DR M +RYIE
Sbjct: 126 GKAMENDRKEMSNRYIE 142
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRT 139
++MRGLP+ A+ + FF P+ + + + GRPSG+A +F ++ D +SK+
Sbjct: 354 IYMRGLPYDADHYAIEAFFSPLRCHSIKLGINDTGRPSGDAIAEFDSYNDLQAGLSKNNQ 413
Query: 140 NMQHRYIELFLNSSSP 155
M RY+ELF +P
Sbjct: 414 RMGRRYVELFDTRGAP 429
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-----ENGRPSGEADVDFATHED 129
G H V +RG+P+ E D+ FF + P+ +I RPSGEA V FAT
Sbjct: 178 GEENHVVRLRGIPWSCKEEDINQFFDGLEPLPAEIVIGGTGGPRSRPSGEAFVRFATQAA 237
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGG 167
A AM + +M RYIE+F++S G GS G
Sbjct: 238 AEAAMEYNNRHMGTRYIEVFMSSMVELNRAKGGGSSAG 275
>gi|449448717|ref|XP_004142112.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
sativus]
gi|449502606|ref|XP_004161690.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein F-like [Cucumis sativus]
Length = 260
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Query: 41 RGGFRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHT--VHMRGLPFRANERDVADF 98
R + N+ ++ R G P + +E + HT + +RGLP+ A + D+ DF
Sbjct: 132 RQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDILDF 191
Query: 99 FR----PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
F+ +H+ ++ E GRPSGEA V+F+ +D+ AMSKDR + RYIELF
Sbjct: 192 FKGFNLSEDSIHLTLNSE-GRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELF 245
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSG-------PSRHTVHMRGLPFRANERDVADFF 99
G R D+ + G PG ++ +S P V +RGLPF E DV +FF
Sbjct: 19 GAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPFDCMETDVVEFF 78
Query: 100 RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+ V + ++NG+ +GE A+ ++R NM RY+E+F
Sbjct: 79 HGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIF 128
>gi|159164096|pdb|2DGW|A Chain A, Solution Structure Of The Second Rna Recognition Motif In
Rna-Binding Protein 19
Length = 91
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDAM 131
SSG + HTV +RG PF E++V +F P+ PV + I +G +G VDF+ E+
Sbjct: 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVK 64
Query: 132 QAMSKDRTNMQHRYIELFLNSSSPRGG 158
QA+ +R M RYIE+F S P G
Sbjct: 65 QALKCNREYMGGRYIEVFREKSGPSSG 91
>gi|156402343|ref|XP_001639550.1| predicted protein [Nematostella vectensis]
gi|156226679|gb|EDO47487.1| predicted protein [Nematostella vectensis]
Length = 862
Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 11/92 (11%)
Query: 63 PRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVD-IHYENGRPSGEAD 121
P+P W T MRGLPF+A ++ + +FF P+ PV + + + G+PSG A
Sbjct: 247 PKPTTPW----------TCKMRGLPFKAKDKHILEFFSPLKPVAIRFVMNKKGQPSGCAF 296
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
VDF++ D +A+ +++ +Q RYIELF +++
Sbjct: 297 VDFSSKSDLEKALKRNKDYLQGRYIELFKDTN 328
>gi|25153681|ref|NP_741422.1| Protein HRPF-2 [Caenorhabditis elegans]
gi|351059337|emb|CCD74180.1| Protein HRPF-2 [Caenorhabditis elegans]
Length = 610
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
P + +RGLPF A E+D+ +FF + V GRP+GEA V+F E+A +AM
Sbjct: 61 PRSQYIRLRGLPFNATEKDIHEFFAGLTIERVKFVCTTGRPNGEAYVEFKNTEEAGKAME 120
Query: 136 KDRTNMQHRYIELFL 150
DR + +RYIE+F
Sbjct: 121 NDRKEISNRYIEVFT 135
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRT 139
V+MRGLP+ A++ +A FF P+ V I E GRPSG+A +F + D A+S++
Sbjct: 327 VYMRGLPYDADDHAIAAFFSPLRCHSVKIGINETGRPSGDAIAEFDNYNDLQVALSRNNQ 386
Query: 140 NMQHRYIELFLNSSSP 155
M RY+ELF N +P
Sbjct: 387 RMGRRYVELFDNRGAP 402
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-----ENGRPSGEADVDFAT 126
+S+G H + +RG+P+ E DV FF + P +I RPSGEA V F T
Sbjct: 150 DSNGEVNHVIRLRGVPWSCKEDDVRKFFEGLEPPPAEIVIGGTGGPRSRPSGEAFVRFTT 209
Query: 127 HEDAMQAMSKDRTNMQHRYIELFLNS 152
+ A +AM + +M RY+E+F++S
Sbjct: 210 QDAAEKAMDYNNRHMGSRYVEVFMSS 235
>gi|118362902|ref|XP_001014867.1| hypothetical protein TTHERM_00051700 [Tetrahymena thermophila]
gi|89296443|gb|EAR94431.1| hypothetical protein TTHERM_00051700 [Tetrahymena thermophila
SB210]
Length = 967
Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIH--YENGRPSGEADVDFATHEDAMQAM 134
S + V +RGLP+ A ++D+ FF+ V I Y+ RPSGEA + FAT +DA +A+
Sbjct: 466 SANIVKIRGLPYNATDQDIQKFFKDSQIVQNGIQKVYDGKRPSGEAFIIFATKQDAQKAI 525
Query: 135 SKDRTNMQHRYIELFLN 151
KD+ M RYIE+FL+
Sbjct: 526 EKDKEKMGSRYIEIFLS 542
Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVD----IHYENGRPSGEADVDFATHE 128
S S H + +RGLPF A E ++ F + + D H +GR SGE +
Sbjct: 351 SRSDSYHYLRLRGLPFNAREAEIQQFLG--ISLEQDQITFKHDNDGRFSGECVIRTKDQN 408
Query: 129 DAMQAMSKDRTNMQHRYIELFLNSSS 154
+ K NM RYIE+F+ S
Sbjct: 409 QLDKIKDKHMRNMGKRYIEVFVAEQS 434
>gi|308498127|ref|XP_003111250.1| CRE-HRPF-1 protein [Caenorhabditis remanei]
gi|308240798|gb|EFO84750.1| CRE-HRPF-1 protein [Caenorhabditis remanei]
Length = 558
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENG-RPSGEADVDFATHEDAMQAMSKDR 138
+ MRG+PFRA E DV DFFRP+ P V++ +N R SG+A V F + +D +A+ KD+
Sbjct: 482 VLRMRGVPFRATEEDVYDFFRPIRPNKVELIRDNQFRASGDARVIFFSRKDYDEALMKDK 541
Query: 139 TNMQHRYIELF 149
M RYIE+
Sbjct: 542 QYMGERYIEMI 552
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V RGLP+ A E D+ FF VDI NGR SG+A V F+ +D A+ KDR +
Sbjct: 7 VQCRGLPWEATEEDLRGFFGGNGIESVDIPKRNGRTSGDATVTFSNEDDYKLALKKDREH 66
Query: 141 MQHRYIELF-LNSS 153
+ RYIE+F +NS+
Sbjct: 67 LGSRYIEVFPMNSA 80
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 54/121 (44%), Gaps = 31/121 (25%)
Query: 37 GGPPRGGFRGGFNNDRWNDR-----PGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRAN 91
GGPPR DR++DR GG GP P + +RGLPF
Sbjct: 95 GGPPR---------DRYSDRGEQHRSGGTGGPDP--------------IIRLRGLPFSVT 131
Query: 92 ERDVADFFRPVVPVHVDI---HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIEL 148
RD+ DF +P+ V I + RPSGEA + F E A + N+ HRYIE+
Sbjct: 132 ARDINDFLQPLGIVRDGILLPDQQRARPSGEAYIVFDMLESVQIAKQRHMKNIGHRYIEV 191
Query: 149 F 149
F
Sbjct: 192 F 192
>gi|308453513|ref|XP_003089469.1| hypothetical protein CRE_14401 [Caenorhabditis remanei]
gi|308240262|gb|EFO84214.1| hypothetical protein CRE_14401 [Caenorhabditis remanei]
Length = 264
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 73 SSGPSR--HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDA 130
SSGP V +RGLPF A E+D+ +FF + V GRP+GEA V+F T +DA
Sbjct: 66 SSGPPLKGQYVRLRGLPFNATEKDIQEFFSGLGVKRVKFVCTTGRPNGEAYVEFKTQDDA 125
Query: 131 MQAMSKDRTNMQHRYIE 147
+AM DR M +RYIE
Sbjct: 126 GKAMENDRKEMSNRYIE 142
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-----ENGRPSGEADVDFATHE 128
+G H V +RG+P+ E D+ FF + P+ +I RPSGEA V FAT
Sbjct: 177 NGEENHVVRLRGIPWSCKEEDINQFFDGLEPLPAEIVIGGTGGPRSRPSGEAFVRFATQA 236
Query: 129 DAMQAMSKDRTNMQHRYIELFLNS 152
A AM + +M R++ L + S
Sbjct: 237 AAEAAMEYNNRHMGTRWVSLVMAS 260
>gi|358248784|ref|NP_001239939.1| uncharacterized protein LOC100805177 [Glycine max]
gi|255644706|gb|ACU22855.1| unknown [Glycine max]
Length = 261
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 7/89 (7%)
Query: 67 GRWVNESSGPSRHT--VHMRGLPFRANERDVADFFR----PVVPVHVDIHYENGRPSGEA 120
+ +E + HT + +RGLPF A++ D+ +FF+ P +H+ ++ E GRPSGEA
Sbjct: 159 AKSYDEGKESAEHTGVLRLRGLPFSASKDDIMEFFKDFGLPEDSIHIIMNSE-GRPSGEA 217
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+F + ED+ AM KDR + RYIELF
Sbjct: 218 YAEFESAEDSKAAMIKDRMTLGSRYIELF 246
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%)
Query: 63 PRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADV 122
P P G P V +RGLPF E DVA+FF + V V ++ G+ +GE
Sbjct: 43 PSPYGYVSQPPPPPPFPVVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFTGEGFC 102
Query: 123 DFATHEDAMQAMSKDRTNMQHRYIELF 149
A+ ++R NM RY+E+F
Sbjct: 103 VLGYPLQVDFALQRNRQNMGRRYVEVF 129
>gi|341877456|gb|EGT33391.1| hypothetical protein CAEBREN_08325 [Caenorhabditis brenneri]
Length = 569
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDI--HYENGRPSGEADVDFATHEDAMQAMSKD 137
+ MRG+PFRA E DV DFF P+ P V++ Y+ RPSG+A V F +D A+ KD
Sbjct: 492 VLRMRGVPFRATETDVYDFFHPIRPNQVELIRDYQFQRPSGDARVIFFNRKDYDDALMKD 551
Query: 138 RTNMQHRYIELF 149
+ M RYIE+
Sbjct: 552 KQYMGERYIEMI 563
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V RGLP+ A E D+ DFF +DI NGR G+A V F +D +A+ KDR +
Sbjct: 7 VSCRGLPWEATEEDLRDFFGNTGIESLDIPKRNGRTCGDATVTFTNEDDYNRALKKDREH 66
Query: 141 MQHRYIELF 149
+ RYIE+F
Sbjct: 67 LGSRYIEVF 75
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 52/106 (49%), Gaps = 17/106 (16%)
Query: 51 DRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI- 109
DR++DR AGPR G + V +RGLPF RD+ DFF P+ V I
Sbjct: 99 DRYSDR----AGPRGGLDPI----------VRLRGLPFSVTIRDINDFFAPLPIVRDGIL 144
Query: 110 --HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
+ RP GEA V F + E A + N+ HRYIE+F S+
Sbjct: 145 LPDQQQARPGGEAYVCFESMESMQIAKQRHMKNIGHRYIEVFEASN 190
>gi|255071701|ref|XP_002499525.1| predicted protein [Micromonas sp. RCC299]
gi|226514787|gb|ACO60783.1| predicted protein [Micromonas sp. RCC299]
Length = 251
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 52/88 (59%), Gaps = 11/88 (12%)
Query: 76 PSRHT--VHMRGLPFRANERDVADFFR-PVVPV-----HVDIHYE---NGRPSGEADVDF 124
P HT + MRGLPF A + D+ F+ P + V H IH +GRPSG A V+F
Sbjct: 152 PQEHTGVLKMRGLPFSATKDDIITFYDDPALSVTAPLTHDSIHIVTSLDGRPSGMAFVEF 211
Query: 125 ATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A+ EDA AMS+DR M RY+ELF +S
Sbjct: 212 ASAEDAKAAMSRDRCTMGSRYVELFPSS 239
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF A E D+ +FF+ + PV V I +GR +GEA V FA A+ K+R
Sbjct: 20 VVRLRGLPFNAGEFDILEFFQGLDPVDVLIVRRDGRATGEAYVLFANPMQMDFALQKNRG 79
Query: 140 NMQHRYIELF 149
M RYIE+F
Sbjct: 80 PMGRRYIEVF 89
>gi|341879523|gb|EGT35458.1| CBN-HRPF-1 protein [Caenorhabditis brenneri]
Length = 569
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDI--HYENGRPSGEADVDFATHEDAMQAMSKD 137
+ MRG+PFRA E DV DFF P+ P V++ Y+ RPSG+A V F +D A+ KD
Sbjct: 492 VLRMRGVPFRATETDVYDFFHPIRPNQVELIRDYQFQRPSGDARVIFFNRKDYDDALMKD 551
Query: 138 RTNMQHRYIELF 149
+ M RYIE+
Sbjct: 552 KQYMGERYIEMI 563
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V RGLP+ A E D+ DFF +DI NGR G+A V F +D +A+ KDR +
Sbjct: 7 VSCRGLPWEATEEDLRDFFGNTGIESLDIPKRNGRTCGDATVTFTNEDDYNRALKKDREH 66
Query: 141 MQHRYIELF 149
+ RYIE+F
Sbjct: 67 LGSRYIEVF 75
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 52/106 (49%), Gaps = 17/106 (16%)
Query: 51 DRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI- 109
DR++DR AGPR G + V +RGLPF RD+ DFF P+ V I
Sbjct: 99 DRYSDR----AGPRGGLDPI----------VRLRGLPFSVTIRDINDFFAPLPIVRDGIL 144
Query: 110 --HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
+ RP GEA V F + E A + N+ HRYIE+F S+
Sbjct: 145 LPDQQRARPGGEAYVCFESMESMQIAKQRHMKNIGHRYIEVFEASN 190
>gi|255645750|gb|ACU23368.1| unknown [Glycine max]
Length = 260
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 7/89 (7%)
Query: 67 GRWVNESSGPSRHT--VHMRGLPFRANERDVADFFR----PVVPVHVDIHYENGRPSGEA 120
+ +E + HT + +RGLPF A++ D+ +FF+ P +H+ ++ E GRP GEA
Sbjct: 158 AKSYDEGKDSAEHTGVLRLRGLPFFASKDDIMEFFKDFGLPEDSIHIIMNSE-GRPFGEA 216
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+FA+ ED+ AM KDR + RYIELF
Sbjct: 217 YAEFASAEDSKAAMVKDRMTLGSRYIELF 245
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 63 PRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADV 122
P P G +V++ P V +RGLPF E DVA+FF + V V ++ G+ +GE
Sbjct: 43 PSPYG-YVSQPPPPPFPVVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFTGEGFC 101
Query: 123 DFATHEDAMQAMSKDRTNMQHRYIELF 149
A+ +R NM RY+E+F
Sbjct: 102 VLGYPLQVDFALQGNRQNMGRRYVEVF 128
>gi|255561415|ref|XP_002521718.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
gi|223539109|gb|EEF40705.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
Length = 264
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 63 PRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGE 119
P R+ ++ + MRGLPF A + ++ +FF+ V IH +G+ +GE
Sbjct: 159 PSKAKRFSDKDQLEYTEILKMRGLPFSAKKPEIIEFFKEFELVEDRIHIACRPDGKATGE 218
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
A V+FA+ ++A +AMSKD+ + RY+ELF
Sbjct: 219 AYVEFASADEAKRAMSKDKMTIGSRYVELF 248
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF + D+ FF + V V + +NGR +GEA V FA A+ +DR
Sbjct: 59 VVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFTGEAFVVFAGAMQVEFALQRDRQ 118
Query: 140 NMQHRYIELF 149
NM RY+E+F
Sbjct: 119 NMGRRYVEVF 128
>gi|224084107|ref|XP_002307213.1| predicted protein [Populus trichocarpa]
gi|222856662|gb|EEE94209.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Query: 44 FRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVV 103
+ G ++ND P P R+ ++ + MRGLPF A + ++ +FF+
Sbjct: 138 YEGIYDNDYHGSPP-----PSRAKRFSDKDQMEYTEILKMRGLPFSAKKAEIIEFFKDFK 192
Query: 104 PVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+ IH +G+ +GEA V+F + E+A +AMSKD+ + RY+ELF
Sbjct: 193 LIDERIHIACRPDGKATGEAYVEFISAEEAKRAMSKDKMTIGSRYVELF 241
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF ++ ++ FF + V V + ++GR +GEA V FA A+ +DR
Sbjct: 52 VVRLRGLPFNCSDVEILKFFAGLDIVDVLLVNKSGRFTGEAFVVFAGPMQVEFALQRDRQ 111
Query: 140 NMQHRYIELF 149
NM RY+E+F
Sbjct: 112 NMGRRYVEVF 121
>gi|356559210|ref|XP_003547893.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Glycine
max]
Length = 264
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 54 NDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE- 112
ND G P R+ ++ + MRGLPF+ + + +FF+ + +H
Sbjct: 150 NDYQGSSPPPSRSKRFNDKDQMECTEILKMRGLPFQVTKSQIVEFFKDFKLIEDRVHIAC 209
Query: 113 --NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+G+ +GEA V+F + E+A +AMSKD+ + RY+ELF
Sbjct: 210 RPDGKSTGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELF 248
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF + D+ FF + V V + ++GR SGEA V FA A+ +DR
Sbjct: 58 VVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQ 117
Query: 140 NMQHRYIELF 149
NM RY+E+F
Sbjct: 118 NMGRRYVEVF 127
>gi|410976696|ref|XP_003994750.1| PREDICTED: probable RNA-binding protein 19 [Felis catus]
Length = 994
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 15/130 (11%)
Query: 27 GGGSGPGPIRGGPPRGGFRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGL 86
GGG GP + P R + RPG A + + P+ HTV +RG
Sbjct: 249 GGGRAAGPEQDAPSR------------DKRPG--AAGAEVDKPATQKEPPTPHTVRLRGA 294
Query: 87 PFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRY 145
PF E++V +F P+ PV + I +G +G VDF++ E+ QA+ +R M RY
Sbjct: 295 PFNVTEKNVTEFLAPLRPVAIRIVRNAHGNKTGYIFVDFSSEEEVKQALKCNREYMGGRY 354
Query: 146 IELFLNSSSP 155
IE+F ++P
Sbjct: 355 IEVFREKNAP 364
>gi|340372253|ref|XP_003384659.1| PREDICTED: epithelial splicing regulatory protein 1-like
[Amphimedon queenslandica]
Length = 848
Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 6/79 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD------IHYENGRPSGEADVDFATHEDAMQA 133
TV M+GLP+RA E D+ +FF+P PV + + Y +G+ SG+A F++ +A
Sbjct: 307 TVRMQGLPYRATESDIMEFFQPEAPVSNEADGILIVRYPDGKASGDAFAVFSSEAHVEEA 366
Query: 134 MSKDRTNMQHRYIELFLNS 152
+ K R N+ RYIE+F +S
Sbjct: 367 LKKHRNNLMGRYIEVFHSS 385
Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 56/136 (41%), Gaps = 7/136 (5%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVD---IHYENGRPSGEADVDFATH 127
N+ S V RGLPF E D+ DFF D I+ NGR +G A ++F +
Sbjct: 532 NKRKKVSSAVVKARGLPFNTKEYDLVDFFADFNVDESDIELIYNHNGRSTGVAYINFQSL 591
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSP 187
DA QA+ ++ H+YI SS R + S G + PS
Sbjct: 592 NDARQAVR----DLNHKYIGHHKPSSLKRVSSSPVSNYRLVNFSNRGLKRDCSTATPSGE 647
Query: 188 FERRNPNQAYVENTAL 203
E + NQ ++N L
Sbjct: 648 AEGESVNQGVIQNCLL 663
Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKD 137
V +RGLPF A+ D+A F ++P V GR +GEA V + A A+ +D
Sbjct: 214 VRLRGLPFSADHNDIALFLSGLNIIPGGVVFSINPVGRRTGEAIVVLEGEDQAQFALQRD 273
Query: 138 RTNMQHRYIELF 149
R + RY+E++
Sbjct: 274 RHYLHQRYVEVY 285
Score = 39.7 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 85 GLPFRANERDVADFFRPV-VPV-HVDIHYE-NGRPSGEADVDFATHEDAMQAMSK-DRTN 140
GLPF AN D+ +FF VP +++I Y+ R G A V F + DA+ A+ K DR
Sbjct: 779 GLPFSANVTDLVNFFVEFNVPASNINIVYDGTNRSVGIAFVGFQSRSDAVDAVKKLDREY 838
Query: 141 MQHRYIELFL 150
+ RY++L L
Sbjct: 839 IGRRYVDLHL 848
Score = 37.7 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 78 RHTVHMRGLPFRANERDVADFF----RPVVP--VHVDIHYENGRPSGEADVDFATHEDAM 131
++ V +RGLP+ A DV FF R + +H+ ++ ++ RP+G+ V + + A
Sbjct: 422 KNCVKLRGLPWEATPEDVISFFGDLNRSIEQQGIHMVLNAQS-RPTGDCFVQMTSVDAAT 480
Query: 132 QAMSK-DRTNMQHRYIELF 149
+A ++ R N+ RYIE+F
Sbjct: 481 RAANELHRQNIGRRYIEVF 499
>gi|268565477|ref|XP_002639457.1| C. briggsae CBR-HRPF-1 protein [Caenorhabditis briggsae]
Length = 556
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 45/80 (56%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+ V RGLP+ A E+D+ DFF +DI NGR SG+A V F +D QA+ K
Sbjct: 3 TEFQVQCRGLPWEATEQDLRDFFGNNGIASLDIPIRNGRTSGDATVTFTNEDDYRQALKK 62
Query: 137 DRTNMQHRYIELFLNSSSPR 156
DR ++ RYIE+F PR
Sbjct: 63 DREHLGSRYIEVFPMDEPPR 82
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDI--HYENGRPSGEADVDFATHEDAMQAMSKD 137
+ MRG+PFRA E DV +FF P+ P V++ + RPSG+A V F + +D A+ KD
Sbjct: 479 VLRMRGVPFRATETDVYEFFHPIRPNQVELIRDSQYQRPSGDARVIFYSRKDYDDALMKD 538
Query: 138 RTNMQHRYIELF 149
+ M RYIE+
Sbjct: 539 KQYMGERYIEMI 550
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 25/117 (21%)
Query: 37 GGPPRGGFRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRH-TVHMRGLPFRANERDV 95
GGPPR DR++DR G + +GPS V +RGLPF RD+
Sbjct: 95 GGPPR---------DRFSDRGSG------------QRTGPSTDPIVRLRGLPFSVTIRDI 133
Query: 96 ADFFRPVVPVHVDI---HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
DF P+ V I + R +GEA V F + E A + N+ HRYIE+F
Sbjct: 134 NDFLAPLPIVRDGILLPDQQRARIAGEAYVVFDSLESVQIAKQRHMKNIGHRYIEVF 190
>gi|25144418|ref|NP_740877.1| Protein HRPF-1, isoform a [Caenorhabditis elegans]
gi|351061232|emb|CCD68995.1| Protein HRPF-1, isoform a [Caenorhabditis elegans]
Length = 549
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDI--HYENGRPSGEADVDFATHEDAMQAMSKD 137
+ MRG+PFRA+E DV DFF P+ P V++ ++ RPSG+A V F +D A+ KD
Sbjct: 472 VLRMRGVPFRASEADVYDFFHPIRPNQVELLRDHQFQRPSGDARVIFYNRKDYDDALMKD 531
Query: 138 RTNMQHRYIELF 149
+ M RYIE+
Sbjct: 532 KQYMGERYIEMI 543
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 56/117 (47%), Gaps = 25/117 (21%)
Query: 36 RGGPPRGGFRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDV 95
RG PPR DR++DR GPR SSGP V +RGLPF RD+
Sbjct: 102 RGAPPR---------DRYSDR----GGPR--------SSGPD-SIVRLRGLPFSVTSRDI 139
Query: 96 ADFFRPVVPVHVDI---HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+DF P+ V I + RP GEA V F T E A + N+ HRYIE+F
Sbjct: 140 SDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIAKQRHMKNIGHRYIEVF 196
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDR 138
+ V RGLP+ A E+++ DFF ++I NGR SG+A V F ED A+ KDR
Sbjct: 5 YEVQCRGLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKKDR 64
Query: 139 TNMQHRYIELFLNSSSP--RGGVGGSGSIG 166
++ RYIE+F +P RG G G G
Sbjct: 65 EHLGSRYIEVFPAGGAPTRRGDRGERGDRG 94
>gi|324506224|gb|ADY42662.1| Heterogeneous nuclear ribonucleoprotein F [Ascaris suum]
Length = 416
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENG-RPSGEADVDFATHED 129
+ES S + V +RGLP+ AN D+ +FF+ + V I E G RPSGEA V A+ E
Sbjct: 99 SESRYASNYVVRLRGLPYSANVDDIKEFFKGLDVADVVIDKEQGGRPSGEAFVRLASKEH 158
Query: 130 AMQAMSKDRTNMQHRYIELFLNS 152
A A+ + + NM RY+E+F +S
Sbjct: 159 AELALERSKNNMGSRYVEVFRSS 181
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRT 139
V MRGLP+ D+ +FF+P+ V + + Y E+ R SG+ V F+T +A A+S+++
Sbjct: 273 VFMRGLPYNVTALDIEEFFKPLNCVEIKLGYNEDRRLSGDGIVLFSTMAEARDALSRNKN 332
Query: 140 NMQHRYIELFLNSSSPR-GGVGGSGSIGGFGGSGGGRLGGF 179
N+ RYIELF ++ P IGG G SG G G +
Sbjct: 333 NIGSRYIELFPGTNIPYPTKYTTFRLIGGTGPSGRGPYGRY 373
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAM 134
P + + +RGLPF A E DV +F + + + +GR SGE V+ + +A+
Sbjct: 3 PETNFIRLRGLPFAAKESDVRNFLQGITAKSITFTLTSSGRASGECYVELNDNSAVKEAL 62
Query: 135 SKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
DR + RYIE+F S + G I G G S
Sbjct: 63 KLDRNEINGRYIEVFTVSEGELAMMVRHGVIRGSGES 99
>gi|390333349|ref|XP_003723691.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Strongylocentrotus purpuratus]
Length = 720
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
V MRGLPF A+E+DV DFF P +PV + + +NG+ +G+A V FA+ + +A
Sbjct: 323 IVRMRGLPFTASEKDVVDFFGPEIPVAGGEEGILFVKQKNGKMTGDAFVLFASEDAVSKA 382
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGV 159
+SK R + +RYIE+F ++++ V
Sbjct: 383 LSKHREYLGNRYIEIFRSTTAEVQQV 408
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 67 GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEA 120
G + S P V RGLP++A++RDV FF+ + V + ++ H GR +GE
Sbjct: 208 GTYDKTDSIPDDTAVKARGLPWQASDRDVFRFFKGLNIARGGVALCLNTH---GRRNGEV 264
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELF 149
V F + E A+ + + N+ RY+E+F
Sbjct: 265 MVHFESSEQRDMALQRHKHNLGKRYVEVF 293
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 73 SSGPSRHTVHMRGLPFRANERDV-------ADFFRPVVPVHVDIHYENGRPSGEADVDFA 125
++G R + MRGLP+ A+ D+ A F RP VH+ ++ + G+P+GEA +
Sbjct: 456 TAGVVRDCIRMRGLPYNASIEDIMLFLGEAAQFIRP-HGVHMVLNLQ-GKPNGEAFIQMT 513
Query: 126 THEDA-MQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSG 163
+ E A + A + M+ RY+E+F S V SG
Sbjct: 514 SAERACLAAQTCHMKYMRERYVEVFQCSGEEMQMVLTSG 552
>gi|72092573|ref|XP_792820.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Strongylocentrotus purpuratus]
Length = 752
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
V MRGLPF A+E+DV DFF P +PV + + +NG+ +G+A V FA+ + +A
Sbjct: 323 IVRMRGLPFTASEKDVVDFFGPEIPVAGGEEGILFVKQKNGKMTGDAFVLFASEDAVSKA 382
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGV 159
+SK R + +RYIE+F ++++ V
Sbjct: 383 LSKHREYLGNRYIEIFRSTTAEVQQV 408
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 67 GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEA 120
G + S P V RGLP++A++RDV FF+ + V + ++ H GR +GE
Sbjct: 208 GTYDKTDSIPDDTAVKARGLPWQASDRDVFRFFKGLNIARGGVALCLNTH---GRRNGEV 264
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELF 149
V F + E A+ + + N+ RY+E+F
Sbjct: 265 MVHFESSEQRDMALQRHKHNLGKRYVEVF 293
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 73 SSGPSRHTVHMRGLPFRANERDV-------ADFFRPVVPVHVDIHYENGRPSGEADVDFA 125
++G R + MRGLP+ A+ D+ A F RP VH+ ++ + G+P+GEA +
Sbjct: 456 TAGVVRDCIRMRGLPYNASIEDIMLFLGEAAQFIRP-HGVHMVLNLQ-GKPNGEAFIQMT 513
Query: 126 THEDA-MQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSG 163
+ E A + A + M+ RY+E+F S V SG
Sbjct: 514 SAERACLAAQTCHMKYMRERYVEVFQCSGEEMQMVLTSG 552
>gi|115484017|ref|NP_001065670.1| Os11g0133600 [Oryza sativa Japonica Group]
gi|77548595|gb|ABA91392.1| heterogeneous nuclear ribonucleoprotein, putative, expressed [Oryza
sativa Japonica Group]
gi|113644374|dbj|BAF27515.1| Os11g0133600 [Oryza sativa Japonica Group]
gi|215764972|dbj|BAG86669.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222615462|gb|EEE51594.1| hypothetical protein OsJ_32846 [Oryza sativa Japonica Group]
Length = 298
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 45 RGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVP 104
+GGF + + P PRP ++SS + +RGLP+ A D+ FF
Sbjct: 179 QGGFFDSEYRHSPP----PRPKKPAEDKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYEL 234
Query: 105 VHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
++H +G+ +GEA V+F T E A AM KD+ + RY+ELF
Sbjct: 235 TEENVHIAYRPDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELF 282
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V +RGLPF ++ D+ FF + V + ++NGR +GEA V F + A A+ ++R N
Sbjct: 94 VRLRGLPFDCDDLDIFKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQN 153
Query: 141 MQHRYIELF-LNSSSPRGGVGGSGSIGGFGGS 171
M RY+E+F + + GGF S
Sbjct: 154 MGRRYVEVFRCKKQEYYSAIAAEVNQGGFFDS 185
>gi|168066869|ref|XP_001785353.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663050|gb|EDQ49838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 239
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP----VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
V +RGLPF A + DV DFFR VH+ +H +GR +GEA VDF + A AM+
Sbjct: 154 VVKLRGLPFSATKSDVMDFFREFELHDEHVHIMLH-SDGRTTGEAFVDFGSASKAKSAMN 212
Query: 136 KDRTNMQHRYIELF 149
KD+ M RY+E+F
Sbjct: 213 KDKMTMGSRYVEIF 226
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF ++ DV DFF + V V + NGR SGEA V F A+ K+R
Sbjct: 29 VVRLRGLPFNCSDSDVFDFFAGLDVVDVLLVRMNGRFSGEAYVVFGAPVQVDYALQKNRH 88
Query: 140 NMQHRYIELF 149
N+ RYIE+F
Sbjct: 89 NIGRRYIEVF 98
>gi|356531341|ref|XP_003534236.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Glycine max]
Length = 264
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 54 NDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE- 112
ND G P R+ ++ + MRGLPF+ + + +FF+ + +H
Sbjct: 150 NDYHGSSPPPSRLKRFNDKDQMEYTEILKMRGLPFQVTKSQIVEFFKDFKLIEDRVHIAC 209
Query: 113 --NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+G+ +GEA V+F + E+A +AMSKD+ + RY+ELF
Sbjct: 210 RPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELF 248
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF + D+ FF + V V + ++GR SGEA V FA A+ +DR
Sbjct: 58 VVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQ 117
Query: 140 NMQHRYIELF 149
NM RY+E+F
Sbjct: 118 NMGRRYVEVF 127
>gi|356531343|ref|XP_003534237.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Glycine max]
Length = 257
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 54 NDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE- 112
ND G P R+ ++ + MRGLPF+ + + +FF+ + +H
Sbjct: 143 NDYHGSSPPPSRLKRFNDKDQMEYTEILKMRGLPFQVTKSQIVEFFKDFKLIEDRVHIAC 202
Query: 113 --NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+G+ +GEA V+F + E+A +AMSKD+ + RY+ELF
Sbjct: 203 RPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELF 241
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF + D+ FF + V V + ++GR SGEA V FA A+ +DR
Sbjct: 51 VVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQ 110
Query: 140 NMQHRYIELF 149
NM RY+E+F
Sbjct: 111 NMGRRYVEVF 120
>gi|168015582|ref|XP_001760329.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688343|gb|EDQ74720.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 550
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 8/101 (7%)
Query: 74 SGPSRHT-VHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEADVDFATHE 128
S S H + MRGLP+ A +R++ DFF ++P +H+ + RP+GEA V+F + +
Sbjct: 285 SDTSEHVCIKMRGLPYNAGQREIMDFFEGYNILPNGIHI-VMGATDRPTGEAFVEFISSD 343
Query: 129 DAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFG 169
+A +AM + R N+ RYIELF + S + +G + FG
Sbjct: 344 EAQRAMERHRQNIGSRYIELFRATKSEM--LLATGGLSSFG 382
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 51/75 (68%), Gaps = 5/75 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP----VHVDIHYENGRPSGEADVDFATHEDAMQAM 134
+ V +RGLPF A+E D+ADFF+ + V + ++++ GR +G+A V FAT E A +A+
Sbjct: 21 NVVRLRGLPFSASESDIADFFKGLEMGPDGVVICVNFQ-GRSTGQAYVQFATAELANKAL 79
Query: 135 SKDRTNMQHRYIELF 149
++R ++ RYIE+F
Sbjct: 80 ERNRQHIGSRYIEVF 94
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIH---YENGRPSGEADVDFATHEDAMQAMSK 136
V MRG+P+ D+ FF+ + V I + +GRP+GEA V+FA E A +AM
Sbjct: 145 VVRMRGMPYSCTSADITAFFKGMQVVADGIFLCTHADGRPTGEAFVEFANEEIAARAMQL 204
Query: 137 DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGG----------GRLGGFG 180
R M RY+ELF ++ G F G+GG G +G FG
Sbjct: 205 HREPMGSRYVELFRSTKGEMMTAVQQRMYGMFSGAGGFSQFGVGQIPGMMGAFG 258
>gi|168037998|ref|XP_001771489.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677216|gb|EDQ63689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 527
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 74 SGPSRHT-VHMRGLPFRANERDVADFFRPVVPVHVDIHYENG---RPSGEADVDFATHED 129
S S H + MRGLP+ A +R++ DFF + IH G RP+GEA V+F + ++
Sbjct: 285 SDTSEHVCIKMRGLPYNAGQREIMDFFEGYSFLPNGIHIVMGATDRPTGEAFVEFMSSDE 344
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFG 169
A +AM + R N+ RYIELF + S + +G + FG
Sbjct: 345 AQRAMERHRQNIGSRYIELFRATKSEM--LLATGGLSSFG 382
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 5/75 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP----VHVDIHYENGRPSGEADVDFATHEDAMQAM 134
+ V +RGLPF A E D+ADFF+ + V + ++++ GR +G+A V FA+ E A +A+
Sbjct: 21 NVVRLRGLPFSATESDIADFFKGLEMGPDGVVICVNFQ-GRSTGQAYVQFASAELANKAL 79
Query: 135 SKDRTNMQHRYIELF 149
++R ++ RYIE+F
Sbjct: 80 ERNRQHIGSRYIEVF 94
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIH---YENGRPSGEADVDFATHEDAMQAMSK 136
V MRG+P+ D+ FF+ + V I + +GRP+GEA V+F E A +AM
Sbjct: 145 VVRMRGMPYSCTSADITAFFKGMQVVADGIFLCTHADGRPTGEAFVEFVNEETAARAMQL 204
Query: 137 DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGG----------GRLGGFG 180
R M RY+ELF ++ G F G+GG G +G FG
Sbjct: 205 HREPMGSRYVELFRSTKGEMMTAVQQRMYGMFSGAGGFSQFGVGQIPGMMGAFG 258
>gi|297830788|ref|XP_002883276.1| hypothetical protein ARALYDRAFT_318838 [Arabidopsis lyrata subsp.
lyrata]
gi|297329116|gb|EFH59535.1| hypothetical protein ARALYDRAFT_318838 [Arabidopsis lyrata subsp.
lyrata]
Length = 356
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVV----PVHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
T+ +RGLPF A + D+ DFF+ VHV ++ E GRP+GEA V+F E++ AM
Sbjct: 269 TLRLRGLPFSAGKEDILDFFKDFELSEDSVHVTVNGE-GRPTGEAFVEFRNAEESRAAMV 327
Query: 136 KDRTNMQHRYIELF 149
KDR + RYIELF
Sbjct: 328 KDRKTLGSRYIELF 341
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 57 PGGFAGPRPGGRWVNESSGPSRHTV-------HMRGLPFRANERDVADFFRPVVPVHVDI 109
PG F GP PG ++ G +RGLPF E DV +FF + V V
Sbjct: 92 PGPFYGPHPGSGFMYNPYGFVAPPPPPPFPAVRLRGLPFDCAEIDVVEFFHGLDVVDVLF 151
Query: 110 HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
++N + +GEA A+ K+R NM RY+E+F
Sbjct: 152 VHKNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVF 191
>gi|303278009|ref|XP_003058298.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460955|gb|EEH58249.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 230
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 50/83 (60%), Gaps = 10/83 (12%)
Query: 77 SRHT--VHMRGLPFRANERDVADFFRP----VVP-VHVDIHYE---NGRPSGEADVDFAT 126
+ HT + +RGLPF A + D+ FF V P VH IH +GRPSG A V+F +
Sbjct: 133 AEHTGVLKLRGLPFSATKDDIITFFDDKSLGVSPLVHDSIHIVLSVDGRPSGVAFVEFVS 192
Query: 127 HEDAMQAMSKDRTNMQHRYIELF 149
EDA AM KDR++M RY+ELF
Sbjct: 193 AEDAKTAMIKDRSSMGTRYVELF 215
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 59 GFAGPR-PGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPS 117
GF G R PGG V E P V +RGLPF A+E DV +FF+ + PV V I +GR +
Sbjct: 8 GFPGARGPGGFGV-EKVFP---VVRLRGLPFNASEYDVQEFFQGLEPVDVLIVRRDGRAT 63
Query: 118 GEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
GEA V A A+ K+R M RYIE+F
Sbjct: 64 GEAYVVLANQMLMEVALQKNRGPMGRRYIEVF 95
>gi|334185502|ref|NP_188725.3| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|332642915|gb|AEE76436.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 292
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP----VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
+ +RGLPF A + D+ DFF+ VHV ++ E GRP+GEA V+F ED+ AM
Sbjct: 205 ILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGE-GRPTGEAFVEFRNAEDSRAAMV 263
Query: 136 KDRTNMQHRYIELF 149
KDR + RYIELF
Sbjct: 264 KDRKTLGSRYIELF 277
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 18/137 (13%)
Query: 27 GGGSGPGPIRGGPPRGGFRGGFNNDRWNDR--PGGFAGPRPGGRWVNESSGPSRHTV--- 81
G G GP GP R R D+ PG F GP P ++ G
Sbjct: 5 GYGDGPDGREMGPKR---------QRMIDQGPPGPFYGPHPSSGFMYNPYGFVAPPPPPP 55
Query: 82 ----HMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
+RGLPF E DV +FF + V V + N + +GEA A+ K+
Sbjct: 56 FPAVRLRGLPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKN 115
Query: 138 RTNMQHRYIELFLNSSS 154
R NM RY+E+F ++
Sbjct: 116 RQNMGRRYVEVFRSTKQ 132
>gi|395833986|ref|XP_003789998.1| PREDICTED: probable RNA-binding protein 19 [Otolemur garnettii]
Length = 959
Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 63/146 (43%), Gaps = 26/146 (17%)
Query: 11 PAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGGFNNDRWNDRPGGFAGPRPGGRWV 70
PA DR R GPG +GGP N R P
Sbjct: 251 PALQDRESR-----------GPGQAQGGPS--------GNKRAQVARAEAEKP------A 285
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G VDF + E+
Sbjct: 286 NQKEPTTPHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFNSEEE 345
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSP 155
+A+ +R M RYIE+F SSP
Sbjct: 346 VKKALKCNREYMGGRYIEVFREKSSP 371
>gi|9294416|dbj|BAB02497.1| unnamed protein product [Arabidopsis thaliana]
Length = 278
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP----VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
+ +RGLPF A + D+ DFF+ VHV ++ E GRP+GEA V+F ED+ AM
Sbjct: 191 ILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGE-GRPTGEAFVEFRNAEDSRAAMV 249
Query: 136 KDRTNMQHRYIELF 149
KDR + RYIELF
Sbjct: 250 KDRKTLGSRYIELF 263
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 57 PGGFAGPRPGGRWVNESSGPSRHTV-------HMRGLPFRANERDVADFFRPVVPVHVDI 109
PG F GP P ++ G +RGLPF E DV +FF + V V
Sbjct: 14 PGPFYGPHPSSGFMYNPYGFVAPPPPPPFPAVRLRGLPFDCAELDVVEFFHGLDVVDVLF 73
Query: 110 HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+ N + +GEA A+ K+R NM RY+E+F ++
Sbjct: 74 VHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFRSTKQ 118
>gi|113951757|ref|NP_001039317.1| G-rich sequence factor 1 [Danio rerio]
gi|112418830|gb|AAI22227.1| Zgc:153305 [Danio rerio]
gi|182890996|gb|AAI64250.1| Zgc:153305 protein [Danio rerio]
Length = 301
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQ 132
+ +++ +HMRGLPF A D+ FF PV + V + + G+P+GEA+ F THEDA+
Sbjct: 239 TAVTKNVIHMRGLPFDAKAEDIVKFFAPVRLMKVVVEFGPEGKPTGEAEAYFKTHEDAVL 298
Query: 133 AMS 135
AMS
Sbjct: 299 AMS 301
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V +RGLP+ E D+ FF + V I G+ SG+A V+FAT A +A+ K
Sbjct: 135 VVRLRGLPYSCTEGDIIRFFSGLDVVEDGVTIILNRRGKSSGDAFVEFATKAMAEKALKK 194
Query: 137 DRTNMQHRYIELF--LNSSSP 155
DR + +RYIE+F + S+ P
Sbjct: 195 DREILGNRYIEIFPAMKSAIP 215
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 33/188 (17%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDF 124
E+ V +GLP+ D+ FF V VH+ ++ + G+PSG+A ++
Sbjct: 29 EENQAKELFIVQAKGLPWSCTAEDIMSFFSECRIRGGVNGVHI-LYNKYGKPSGQAFIEL 87
Query: 125 ATHEDAMQAMSKDRTNMQHRYIEL----------FLNSSSPRGGVGGSGSIGG--FGGSG 172
ED +A+ + R + R IE+ L +S R + G + +
Sbjct: 88 EHEEDVGKALDQHRHYPRDRLIEVREVTNKDAEAILKASKERVETDTVVRLRGLPYSCTE 147
Query: 173 GGRLGGFGGSD-----PSSPFERRNPN--QAYVE--NTALSRSAV-KDRAI----NVQLC 218
G + F G D + RR + A+VE A++ A+ KDR I +++
Sbjct: 148 GDIIRFFSGLDVVEDGVTIILNRRGKSSGDAFVEFATKAMAEKALKKDREILGNRYIEIF 207
Query: 219 PYHRHSRP 226
P + + P
Sbjct: 208 PAMKSAIP 215
>gi|196011702|ref|XP_002115714.1| hypothetical protein TRIADDRAFT_59686 [Trichoplax adhaerens]
gi|190581490|gb|EDV21566.1| hypothetical protein TRIADDRAFT_59686 [Trichoplax adhaerens]
Length = 341
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 65 PGGRWVNESSGPSRH--TVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEAD 121
P E + P+++ T+ +RGLPF NE ++ +FF P + + G+P+G A
Sbjct: 195 PNKESDTEDNAPAKNIITIKLRGLPFDVNEEEIKEFFHPTKLENTRLMTNHKGKPNGVAF 254
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELF 149
VDF EDA +AM ++ +++RYIELF
Sbjct: 255 VDFTNEEDACKAMKSNKDYIRNRYIELF 282
>gi|119574668|gb|EAW54283.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_d
[Homo sapiens]
Length = 149
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|294461682|gb|ADE76400.1| unknown [Picea sitchensis]
Length = 265
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 79 HT--VHMRGLPFRANERDVADFFRPVVPVHVDIH---YENGRPSGEADVDFATHEDAMQA 133
HT + +RGLPF + RD+ +FF+ ++H + +GR +GEA V+F++ D+ A
Sbjct: 174 HTGFLKLRGLPFSVSRRDIVEFFKDYQLKEKNVHIVTHSDGRATGEAFVEFSSAADSKDA 233
Query: 134 MSKDRTNMQHRYIELF 149
MSKD+ + RY+ELF
Sbjct: 234 MSKDKMTIGTRYVELF 249
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF +E D+ +FF + V + ++ GR SGE V F + A+ +DR
Sbjct: 63 VVRLRGLPFNCSESDICEFFAGLDVVDALLVHKQGRFSGEGFVLFRSPMQVDFALQRDRQ 122
Query: 140 NMQHRYIELF 149
NM RYIE+F
Sbjct: 123 NMGRRYIEVF 132
>gi|156375031|ref|XP_001629886.1| predicted protein [Nematostella vectensis]
gi|156216896|gb|EDO37823.1| predicted protein [Nematostella vectensis]
Length = 354
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 68 RWVNESSGP-----SRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGE 119
WV + GP V +RGLP+ ++ ++A FF +VP + I E G+ +GE
Sbjct: 89 EWVIKRMGPPSDRDQEAVVKLRGLPYGCSKEEIAQFFTGLEIVPNGITITLDEEGKTTGE 148
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
V+FA+ E A QAM K + + HRYIE+F +S S
Sbjct: 149 GFVEFASPEIAGQAMQKHKEKIGHRYIEIFKSSKS 183
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPV---HVDIHYE---NGRPSGEADVDFATHEDAMQA 133
V RGLP+ A D+ +FF+ V +H+ +GRPSGE V F + +D +A
Sbjct: 6 VVRARGLPWSATPEDIQNFFKDCNIVGGPQNGVHFTFGIDGRPSGECFVQFVSEKDVEKA 65
Query: 134 MSKDRTNMQHRYIELF 149
+ + +M RYIE+F
Sbjct: 66 LEMNNEHMGKRYIEVF 81
>gi|148700120|gb|EDL32067.1| mCG11326, isoform CRA_d [Mus musculus]
Length = 186
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|149043915|gb|EDL97366.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_d [Rattus norvegicus]
Length = 186
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|340386110|ref|XP_003391551.1| PREDICTED: epithelial splicing regulatory protein 1-like, partial
[Amphimedon queenslandica]
Length = 541
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S TV M+GLP+RA E D+ +FF+P PV + + Y +G+ SG+A F++
Sbjct: 261 SSEKVFTVRMQGLPYRATESDIMEFFQPEAPVSNEADGILIVRYPDGKASGDAFAVFSSE 320
Query: 128 EDAMQAMSKDRTNMQHRYIELF 149
+A+ K R N+ RYIE+F
Sbjct: 321 AHVEEALKKHRNNLMGRYIEVF 342
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
V +RGLPF A+ D+A F ++P V I+ GR +GEA V + A A+
Sbjct: 173 VVRLRGLPFSADHNDIALFLSGLNIIPGGVVFSIN-PVGRRTGEAIVVLEGEDQAQFALQ 231
Query: 136 KDRTNMQHRYIELF 149
+DR + RY+E++
Sbjct: 232 RDRHYLHQRYVEVY 245
>gi|83267764|gb|ABB99419.1| G-rich RNA sequence-binding factor 1 [Cervus elaphus]
Length = 45
Score = 60.8 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/43 (65%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 115 RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ +GEADV F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 3 KATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 44
>gi|25144421|ref|NP_740878.1| Protein HRPF-1, isoform b [Caenorhabditis elegans]
gi|351061233|emb|CCD68996.1| Protein HRPF-1, isoform b [Caenorhabditis elegans]
Length = 362
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 56/117 (47%), Gaps = 25/117 (21%)
Query: 36 RGGPPRGGFRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDV 95
RG PPR DR++DR GPR SSGP V +RGLPF RD+
Sbjct: 102 RGAPPR---------DRYSDR----GGPR--------SSGPD-SIVRLRGLPFSVTSRDI 139
Query: 96 ADFFRPVVPVHVDI---HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+DF P+ V I + RP GEA V F T E A + N+ HRYIE+F
Sbjct: 140 SDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIAKQRHMKNIGHRYIEVF 196
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDR 138
+ V RGLP+ A E+++ DFF ++I NGR SG+A V F ED A+ KDR
Sbjct: 5 YEVQCRGLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKKDR 64
Query: 139 TNMQHRYIELF 149
++ RYIE+F
Sbjct: 65 EHLGSRYIEVF 75
>gi|298713992|emb|CBJ27224.1| heterogeneous nuclear ribonucleoprotein, putative [Ectocarpus
siliculosus]
Length = 525
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSK 136
+ MRGLP+RA++ +V FF+ + + +GR +GEA V FAT EDA + K
Sbjct: 438 VIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRK 497
Query: 137 DRTNMQHRYIELFLNS 152
DR + RYIELF +S
Sbjct: 498 DREMIGSRYIELFTSS 513
>gi|224002324|ref|XP_002290834.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974256|gb|EED92586.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 387
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLPF+A+++D+ DFF+ P+ + +GR +GE V F +DA +AM+
Sbjct: 299 VRLRGLPFQASKQDILDFFQEYNPIESSVLLTYRGDGRSTGEGYVAFKDADDAKEAMALH 358
Query: 138 RTNMQHRYIELFLNS 152
R+ + RYIELF+++
Sbjct: 359 RSTIGSRYIELFISN 373
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDI--HYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLPF A DV FF+ +V + V + H E SGEA V FA D + +D
Sbjct: 93 CVRVRGLPFEATLEDVLVFFQGLVVIDVVLVPHAE----SGEAFVVFANPMDFQMGLQRD 148
Query: 138 RTNMQHRYIELF 149
+M RY+E+F
Sbjct: 149 HQSMGRRYLEVF 160
>gi|294461466|gb|ADE76294.1| unknown [Picea sitchensis]
Length = 262
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIH---YENGRPSGEADVDFATHEDAMQAMSK 136
+ +RGLPF ++RD+ +FF ++H + +GR +GEA V+F+ D+ AMSK
Sbjct: 174 ILKLRGLPFSVSKRDIIEFFTDYDLSETNVHIVSHSDGRATGEAFVEFSNDTDSKAAMSK 233
Query: 137 DRTNMQHRYIELF 149
D+ + RY+ELF
Sbjct: 234 DKMMIGTRYVELF 246
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF ++ DV +FF + V V + ++ GR SGE V F A+ +DR
Sbjct: 60 VVRLRGLPFNCSDNDVCEFFAGLDVVDVLLVHKQGRFSGEGFVVFGAPMQVDFALQRDRQ 119
Query: 140 NMQHRYIELF 149
NM RYIE+F
Sbjct: 120 NMGRRYIEVF 129
>gi|325303152|tpg|DAA34329.1| TPA_inf: splicing factor hnRNP-F [Amblyomma variegatum]
Length = 231
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 11/103 (10%)
Query: 60 FAGPRPGGRWVNESSGPSRH------TVHMRGLPFRANERDVADFFR--PVVP--VHVDI 109
F R WV + SG + V +RGLPF ++ ++A FF +VP + +
Sbjct: 87 FKSKRSEMDWVVKRSGAHQQDSLNDGCVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPT 146
Query: 110 HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
Y+ GR +GEA V FAT + A +AM K + + HRYIE+F +S
Sbjct: 147 DYQ-GRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSS 188
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRP--------VVPVHVDIHYENGRPSGEADVDFATHEDAM 131
+ +RGLP+ + ++ +FF + VH+ + E GRPSGEA ++ + +D
Sbjct: 11 VLRIRGLPWSTTKEEILNFFTAKECHIKGGINGVHMTLSRE-GRPSGEAYIELESEQDME 69
Query: 132 QAMSKDRTNMQHRYIELFLNSSSPRGGV 159
+ + ++ HRYIE+F + S V
Sbjct: 70 IGLQRHNEHIGHRYIEVFKSKRSEMDWV 97
>gi|294460097|gb|ADE75631.1| unknown [Picea sitchensis]
Length = 256
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIH---YENGRPSGEADVDFATHEDAMQAMSK 136
+ +RGLPF ++RD+ +FF ++H + +GR +GEA V+F+ D+ AMSK
Sbjct: 168 ILKLRGLPFSVSKRDIIEFFTDYDLSETNVHIVSHSDGRATGEAFVEFSNDTDSKAAMSK 227
Query: 137 DRTNMQHRYIELF 149
D+ + RY+ELF
Sbjct: 228 DKMMIGTRYVELF 240
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF ++ DV +FF + V V + ++ GR SGE V F A+ +DR
Sbjct: 54 VVRLRGLPFNCSDNDVCEFFAGLDVVDVLLVHKQGRFSGEGFVVFGAPMQVDFALQRDRQ 113
Query: 140 NMQHRYIELF 149
NM RYIE+F
Sbjct: 114 NMGRRYIEVF 123
>gi|71895579|ref|NP_001025737.1| epithelial splicing regulatory protein 2 [Gallus gallus]
gi|75571416|sp|Q5ZLR4.1|ESRP2_CHICK RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|53128733|emb|CAG31329.1| hypothetical protein RCJMB04_5c3 [Gallus gallus]
Length = 701
Score = 60.1 bits (144), Expect = 8e-07, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ MRGLPF A + DV F P PV + + Y +GRP+G+A V F+ E A A+
Sbjct: 329 IRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNAL 388
Query: 135 SKDRTNMQHRYIELFLNSSS 154
K + + RYIELF ++++
Sbjct: 389 KKHKEILGKRYIELFRSTAA 408
Score = 43.9 bits (102), Expect = 0.059, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
++G R V +RGLP+ A D+ DF VH+ ++ + GRPSG+A + +
Sbjct: 441 ATGSIRDCVRLRGLPYTAGIDDILDFMGDATADIKPHGVHMVLN-QQGRPSGDAFIQMKS 499
Query: 127 HEDA-MQAMSKDRTNMQHRYIELF 149
+ A M A + M+ RY+E+F
Sbjct: 500 ADKAFMVAQKCHKKMMKDRYVEVF 523
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S + RGLP++++++D+A FF+ + + GR +GEA V F E A
Sbjct: 224 SETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLA 283
Query: 134 MSKDRTNMQHRYIELF 149
+ + + +M RYIE++
Sbjct: 284 LERHKHHMGSRYIEVY 299
>gi|380818506|gb|AFE81126.1| putative RNA-binding protein 19 [Macaca mulatta]
gi|383412169|gb|AFH29298.1| putative RNA-binding protein 19 [Macaca mulatta]
Length = 960
Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G VDF+ E+
Sbjct: 286 NQKEPTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEE 345
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGG 170
QA+ +R M RYIE+F + P V + + G
Sbjct: 346 VKQALKCNREYMGGRYIEVFREKNVPTTNVAPKNTTKSWQG 386
>gi|355786561|gb|EHH66744.1| hypothetical protein EGM_03792 [Macaca fascicularis]
Length = 960
Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G VDF+ E+
Sbjct: 286 NQKEPTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEE 345
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGG 170
QA+ +R M RYIE+F + P V + + G
Sbjct: 346 VKQALKCNREYMGGRYIEVFREKNVPTTNVAPKNTTKSWQG 386
>gi|355564713|gb|EHH21213.1| hypothetical protein EGK_04225 [Macaca mulatta]
Length = 960
Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G VDF+ E+
Sbjct: 286 NQKEPTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEE 345
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGG 170
QA+ +R M RYIE+F + P V + + G
Sbjct: 346 VKQALKCNREYMGGRYIEVFREKNVPTTNVAPKNTTKSWQG 386
>gi|328874866|gb|EGG23231.1| hypothetical protein DFA_05363 [Dictyostelium fasciculatum]
Length = 939
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Query: 72 ESSGPSRH------TVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDF 124
+ S P+ H +V +RGLP+ +E V +FF+P+ +DI Y NG+ +G+A V+F
Sbjct: 418 QMSSPTHHPNNINASVLLRGLPWGVSEDAVREFFQPLDVSFIDIFYNSNGKQTGDASVEF 477
Query: 125 ATHEDAMQAMSKDRTNMQHRYIELF 149
AT EDA ++ + + M RYIE+
Sbjct: 478 ATEEDANLSLDRHKQMMGTRYIEVI 502
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH--VDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
TV +RGLPF E D++ FF + V + I Y+ RP G A V F +D QA+S++
Sbjct: 800 TVKLRGLPFTTTESDISTFFNGLDIVQGGIKIVYQRDRPMGIAYVTFTNSDDYHQALSRN 859
Query: 138 RTNMQHRYIELF 149
++ RYIE+F
Sbjct: 860 NQHLGPRYIEVF 871
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSK 136
+ +RGLPF + D+ F P+ ++ + + GR SGEA V+F T + A A+S
Sbjct: 546 VLKLRGLPFSISTMDIRKFLNGYPIKSNNILMTMNDEGRFSGEAYVEFQTSDIAQAALSN 605
Query: 137 -DRTNMQHRYIELF 149
M RYIE F
Sbjct: 606 LQNKTMMSRYIEFF 619
>gi|326927219|ref|XP_003209790.1| PREDICTED: epithelial splicing regulatory protein 2-like [Meleagris
gallopavo]
Length = 701
Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ MRGLPF A + DV F P PV + + Y +GRP+G+A V F+ E A A+
Sbjct: 329 IRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNAL 388
Query: 135 SKDRTNMQHRYIELFLNSSS 154
K + + RYIELF ++++
Sbjct: 389 KKHKEILGKRYIELFRSTAA 408
Score = 43.5 bits (101), Expect = 0.064, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
++G R V +RGLP+ A D+ DF VH+ ++ + GRPSG+A + +
Sbjct: 441 ATGSIRDCVRLRGLPYTAGIDDILDFMGDATADIKPHGVHMVLN-QQGRPSGDAFIQMKS 499
Query: 127 HEDA-MQAMSKDRTNMQHRYIELF 149
+ A M A + M+ RY+E+F
Sbjct: 500 ADKAFMVAQKCHKKMMKDRYVEVF 523
Score = 41.2 bits (95), Expect = 0.32, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
+ RGLP++++++D+A FF+ + + GR +GEA V F E A+ +
Sbjct: 228 IRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALERH 287
Query: 138 RTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 288 KHHMGSRYIEVY 299
>gi|321446634|gb|EFX60905.1| hypothetical protein DAPPUDRAFT_122743 [Daphnia pulex]
Length = 169
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADF---FRPVVPVHVDIHYEN-GRPSGEADVDFAT 126
N SG V MRGLPF A+ D+ F F + P + IH N GRPSGEA V+F
Sbjct: 84 NNGSGLPGTLVIMRGLPFTASCSDILQFFSGFSELTPDCIQIHRNNDGRPSGEAVVNFPN 143
Query: 127 HEDAMQAMS-KDRTNMQHRYIELFLN 151
+A +A++ K+R N+ RYIELF+
Sbjct: 144 RAEAERAIAEKNRQNIGTRYIELFMT 169
>gi|167517425|ref|XP_001743053.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778152|gb|EDQ91767.1| predicted protein [Monosiga brevicollis MX1]
Length = 1117
Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 70 VNESSGPSRH-TVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATH 127
V E + P R TV + GLPF+A E ++ FF+P+ P+ V + ++ R SG A VDFAT
Sbjct: 418 VEELTKPERFFTVRVLGLPFKAREPEIVGFFKPLKPIDVRLLFDKRKRSSGRAFVDFATK 477
Query: 128 EDAMQAMSKDRTNMQHRYIEL 148
+ +A+ K ++ M RYIE+
Sbjct: 478 PEWKKALEKHKSKMGKRYIEV 498
>gi|109098882|ref|XP_001106082.1| PREDICTED: probable RNA-binding protein 19 [Macaca mulatta]
Length = 998
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G VDF+ E+
Sbjct: 324 NQKEPTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEE 383
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGG 170
QA+ +R M RYIE+F + P V + + G
Sbjct: 384 VKQALKCNREYMGGRYIEVFREKNVPTTNVAPKNTTKSWQG 424
>gi|393910110|gb|EJD75743.1| RNA recognition domain-containing protein [Loa loa]
Length = 674
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 30/139 (21%)
Query: 30 SGPGPIRGGPPRGGFRGGFNNDRWND---------------RPGGFAGP--------RPG 66
SGP P+RG P FR DR+ D RP + P R G
Sbjct: 216 SGPVPLRGISPTLDFRF---RDRYADYGRYGGPIRLSSLHPRPSPYDRPYYDRDRYYRCG 272
Query: 67 GRW---VNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADV 122
R+ +E+ V MRGLP+ D+ +FFRP+ V + + Y E R SG+A V
Sbjct: 273 ARYDPEFDEAMYDPTVKVFMRGLPYSVTTLDIEEFFRPLNCVEIKLGYNEERRLSGDALV 332
Query: 123 DFATHEDAMQAMSKDRTNM 141
F+T +A +A+S+++ NM
Sbjct: 333 SFSTMAEAREALSRNKNNM 351
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHV-------------DIHY---ENGRPSGE 119
P + + +RGLPF A E+DV DF + + + I + NGR SGE
Sbjct: 3 PDTNYIRLRGLPFAAKEQDVRDFLQDISIWFLRYRSFFLFGLNAKSITFTLTSNGRASGE 62
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGG 178
V+ E +A DR + RYIE+F S + + G I G GG R
Sbjct: 63 CYVELDDQEAVKEAQKLDRNEINGRYIEVFSVSDAELLMMIRHGVIKGSGGDADSRYAS 121
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDA 130
+S S V +RGLP+ A D+ +FF + I E GRPSGEA V AT E A
Sbjct: 116 DSRYASNFVVRLRGLPYSATIDDIKEFFSGLEVADAVIDKEPGGRPSGEAFVRLATKEYA 175
Query: 131 MQAMSKDRTNMQHRYIELFLNSS 153
A+ + + M RY+E+F +S+
Sbjct: 176 ELALERSKNYMGSRYVEVFRSSA 198
>gi|327276493|ref|XP_003223004.1| PREDICTED: epithelial splicing regulatory protein 2-like [Anolis
carolinensis]
Length = 714
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVD------IHYENGRPSGEADVDFATHEDAMQAM 134
+ MRGLPF A DV F P PV + + Y +GRP+G+A V FA E A A+
Sbjct: 332 IRMRGLPFTATPEDVLGFLGPECPVTGEKEGLLFVKYPDGRPTGDAFVLFACEEFAQNAL 391
Query: 135 SKDRTNMQHRYIELFLNSSS 154
K + + RYIELF ++++
Sbjct: 392 KKHKEILGKRYIELFRSTAA 411
Score = 41.2 bits (95), Expect = 0.31, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 71 NESSGPSRHTV-HMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFAT 126
++S R TV RGLP++++++D+A FF+ + + GR +GEA V F
Sbjct: 220 SKSETVDRETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVN 279
Query: 127 HEDAMQAMSKDRTNMQHRYIELF 149
E A+ + + +M RYIE++
Sbjct: 280 SEQRDLALERHKHHMGSRYIEVY 302
Score = 36.6 bits (83), Expect = 7.7, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVV------PVHVDIHYENGRPSGEADVDFAT 126
++G +R V +RGLP+ A D+ +F VH+ ++ + GR SG+A + +
Sbjct: 444 AAGSARDCVRLRGLPYTAGIDDILEFMGDATGDIKPHGVHMVLN-QQGRLSGDAFIQMKS 502
Query: 127 HEDAMQAMSK-DRTNMQHRYIELF 149
+ A K + M+ RY+E+F
Sbjct: 503 SDRAYLVAQKCHKKMMKDRYVEVF 526
>gi|357517683|ref|XP_003629130.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
gi|355523152|gb|AET03606.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
Length = 290
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 44 FRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVV 103
+ G ++ND P P R+ ++ + MRGLPF + + DFF+
Sbjct: 171 YEGIYDNDYQGSPP-----PSRSKRFSDKEQMDYTEILKMRGLPFLVTKSQIIDFFKDYK 225
Query: 104 PVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+ +H +G+ +GEA V+F + ++A +AM KD+ + RY+ELF
Sbjct: 226 LIEGRVHIACRPDGKATGEAYVEFVSPDEAKRAMFKDKMTIGSRYVELF 274
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF + D+ FF + V V + ++GR SGEA V FA A+ +DR
Sbjct: 85 VVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQ 144
Query: 140 NMQHRYIELF 149
NM RY+E+F
Sbjct: 145 NMGRRYVEVF 154
>gi|449277356|gb|EMC85572.1| Epithelial splicing regulatory protein 2 [Columba livia]
Length = 721
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ MRGLPF A + DV F P PV + + Y +GRP+G+A V F+ E A A+
Sbjct: 344 IRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNAL 403
Query: 135 SKDRTNMQHRYIELFLNSSS 154
K + + RYIELF ++++
Sbjct: 404 KKHKEILGKRYIELFRSTAA 423
Score = 42.0 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S + RGLP++++++D+A FF+ + + GR +GEA V F E A
Sbjct: 239 SETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLA 298
Query: 134 MSKDRTNMQHRYIELF 149
+ + + +M RYIE++
Sbjct: 299 LERHKHHMGSRYIEVY 314
Score = 41.2 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVV------PVHVDIHYENGRPSGEADVDFAT 126
++G R V +RGLP+ A D+ +F VH+ ++ + GRPSG+A + +
Sbjct: 456 ATGSIRDCVRLRGLPYTAGIDDILEFMGDATGDIKPHGVHMVLN-QQGRPSGDAFIQMKS 514
Query: 127 HEDA-MQAMSKDRTNMQHRYIELF 149
+ A M A + M+ RY+E+F
Sbjct: 515 ADKAFMVAQKCHKKMMKDRYVEVF 538
>gi|432094975|gb|ELK26383.1| Putative RNA-binding protein 19 [Myotis davidii]
Length = 966
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 64 RPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADV 122
+P +W E S P HTV +RG PF E++V +F P+ PV + I +G +G V
Sbjct: 289 KPAVQW--EPSTP--HTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYVFV 344
Query: 123 DFATHEDAMQAMSKDRTNMQHRYIELFLNSSSP 155
DF++ E+ +A+ +R M RYIE+F + P
Sbjct: 345 DFSSEEEVKKALKCNREYMGGRYIEVFREKTVP 377
>gi|395521348|ref|XP_003764780.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Sarcophilus harrisii]
Length = 304
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 81 VHMRGLPFRANERDVADFF--RPVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLPF N+ D+ FF ++P + + + GR SGEA V FA+ E A +A+ K
Sbjct: 112 VRLRGLPFNCNKEDIVQFFSGLEIMPNGIMLQVDFRGRNSGEAFVQFASQEIAEKALKKH 171
Query: 138 RTNMQHRYIELFLNSSS 154
+ M HRYIE+F +S +
Sbjct: 172 KERMGHRYIEIFKSSQA 188
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV FF V +H I+ GRPSGEA V+ + E+ A
Sbjct: 11 VVKVRGLPWSCSASDVQHFFSGCRIRNGVAGIHF-IYTREGRPSGEAFVELESEEEVELA 69
Query: 134 MSKDRTNMQHRYIELF 149
+ K R M HRY+E+F
Sbjct: 70 LKKHRETMAHRYVEVF 85
>gi|134047877|sp|Q7ZVR8.2|ESRP2_DANRE RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
Length = 736
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ + MRGLPF A +DV F P PV + + Y +GRP+G+A V FA
Sbjct: 320 SKENQMIIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACE 379
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSS 154
E A A+ K + + RYIELF ++++
Sbjct: 380 EYAQNALKKHKQILGKRYIELFRSTAA 406
Score = 41.2 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S + RGLP++++++D+A FF+ + + GR +GEA V F E A
Sbjct: 222 SETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDMA 281
Query: 134 MSKDRTNMQHRYIELF 149
+ + + +M RYIE++
Sbjct: 282 LDRHKHHMGSRYIEVY 297
Score = 41.2 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRP----VVP--VHVDIHYENGRPSGEADVDFAT 126
++G +R + +RGLP+ A D+ +F + P VH+ ++ + GRPSG+A + +
Sbjct: 444 TTGNTRDCIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLN-QQGRPSGDAFIQMKS 502
Query: 127 HEDA-MQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
+ A M A + M+ RY+E+F S+ V G++ G S
Sbjct: 503 ADRAFMVAQKCHKKMMKDRYVEVFQCSTEEMSFVLMGGTLNRSGLS 548
>gi|405968884|gb|EKC33911.1| Epithelial splicing regulatory protein 2 [Crassostrea gigas]
Length = 727
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 8/82 (9%)
Query: 81 VHMRGLPFRANERDVADFF--RPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQ 132
+ MRGLPF A + V +FF P V V + +HY +GR +G+A V A+ EDA+
Sbjct: 327 IRMRGLPFTATAQQVLEFFAREPSVSVLDGEEGILFVHYPDGRSTGDAFVLLASEEDAVS 386
Query: 133 AMSKDRTNMQHRYIELFLNSSS 154
A+ K R M RYIELF ++++
Sbjct: 387 ALKKHREIMGTRYIELFKSTTA 408
Score = 42.4 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFR---PVVPVHVDIH-YENGRPSGEADVDFATHED 129
+GP V MRGLP A +D+ +FF+ V P ++ I +GR +G+A + F T +
Sbjct: 646 TGPPTLVV-MRGLPVNAQVQDILNFFQGFPEVTPENIQIQILPDGRLTGDALISFMTRSE 704
Query: 130 AMQAM-SKDRTNMQHRYIELFL 150
A +A+ ++ + M IELFL
Sbjct: 705 AERAIATRGKQTMGQCLIELFL 726
Score = 40.0 bits (92), Expect = 0.76, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMS 135
H V RGLP++++++D+A FF+ + + GR +GEA V ++ A+
Sbjct: 224 HVVRARGLPWQSSDQDIARFFKGLNIAKGGVALCLSPQGRRNGEALVRLENEQNRDLALK 283
Query: 136 KDRTNMQHRYIELFLNSSSPRGGV-GGSGSIGGFGGSGGGRL 176
+ + ++ RYIE++ + V GGS S S GG++
Sbjct: 284 RHKHHIGQRYIEVYKATGKDFVNVAGGSNSEAQAFLSRGGQV 325
>gi|40548306|ref|NP_954966.1| epithelial splicing regulatory protein 2 [Danio rerio]
gi|28279592|gb|AAH45439.1| RNA binding motif protein 35B [Danio rerio]
Length = 736
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ + MRGLPF A +DV F P PV + + Y +GRP+G+A V FA
Sbjct: 320 SKENQMIIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACE 379
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSS 154
E A A+ K + + RYIELF ++++
Sbjct: 380 EYAQNALKKHKQILGKRYIELFRSTAA 406
Score = 41.2 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S + RGLP++++++D+A FF+ + + GR +GEA V F E A
Sbjct: 222 SETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDMA 281
Query: 134 MSKDRTNMQHRYIELF 149
+ + + +M RYIE++
Sbjct: 282 LDRHKHHMGSRYIEVY 297
Score = 40.8 bits (94), Expect = 0.41, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRP----VVP--VHVDIHYENGRPSGEADVDFAT 126
++G +R + +RGLP+ A D+ +F + P VH+ ++ + GRPSG+A + +
Sbjct: 444 TTGNTRDCIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLN-QQGRPSGDAFIQMKS 502
Query: 127 HEDA-MQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
+ A M A + M+ RY+E+F S+ V G++ G S
Sbjct: 503 ADRAFMVAQKCHKKMMKDRYVEVFQCSTEEMSFVLMGGTLNRSGLS 548
>gi|402887773|ref|XP_003907256.1| PREDICTED: probable RNA-binding protein 19 [Papio anubis]
Length = 998
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G VDF+ E+
Sbjct: 324 NQKEPTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEE 383
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGG 170
QA+ +R M RYIE+F + P V + + G
Sbjct: 384 VKQALKCNREYMGGRYIEVFREKNIPTTNVAPKNTTKSWQG 424
>gi|452823782|gb|EME30790.1| RNA-binding protein [Galdieria sulphuraria]
Length = 739
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 53/100 (53%), Gaps = 13/100 (13%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSK 136
TV MRGLPFRA D+ FF D+ + GRPSGEA V F T E+A A+S+
Sbjct: 644 TVRMRGLPFRATISDIQFFFSDFHITESDVVLGFDKMGRPSGEAWVTFGTEEEARNAVSQ 703
Query: 137 DRTNMQH-----RYIELFLNSSSPRGGVGGSGSIGGFGGS 171
+QH RYIELFL + + GS S+ G G S
Sbjct: 704 ----LQHAHIGKRYIELFLCTQDKSVSL-GSVSLEGKGDS 738
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQ 132
P+ + +RGLP+ A + DV +F + +H+ + G+P GEA V + +D +
Sbjct: 252 PTGSIIRLRGLPWSATKEDVLNFLEGAQVIPCAVHFVLNQQGKPRGEAFVQLLSVDDVNR 311
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRGGV-----GGSGSIGGFGGSGGGRLGGFGGSDP 184
A+ R + HRYIE+F ++ V G S S+ F + + S P
Sbjct: 312 ALELHRQVLGHRYIEVFKSTPQEMSTVLSRQNGRSTSLAPFSRTTYSNVSSIDDSKP 368
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 9/81 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP--------VHVDIHYENGRPSGEADVDFATHEDAM 131
+ MRGLPF A+ VA FF + +H+ + ++G P GEA V+FA+ +
Sbjct: 371 IIRMRGLPFSASADQVARFFDGIEIAGCRSNGGIHI-VQNQDGHPIGEAFVEFASEDALN 429
Query: 132 QAMSKDRTNMQHRYIELFLNS 152
+A+ + + M RYIELF +S
Sbjct: 430 KALQRHKQMMGKRYIELFRSS 450
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 66 GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENG---RPSGEADV 122
R V S + + +RGLPF D+ FF V I++ N RP GEA V
Sbjct: 482 SSRSVLNSDASTCSFLRIRGLPFDTTVSDITTFFAEYRIVPGGIYFVNNGLDRPKGEAFV 541
Query: 123 DFATHEDAMQAM-SKDRTNMQHRYIELFLNSSSPRGGVGGS 162
F++ ++ A+ KD+ M RY+ELF S + + GS
Sbjct: 542 QFSSVDERNDALKKKDKLYMGSRYVELFEASEAEVSALLGS 582
>gi|298710505|emb|CBJ25569.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 670
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP----VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
V MRGLP+ ANE D+ +FF + +HV ++ +GRPSGEA V F T E A +A+
Sbjct: 142 VVRMRGLPWSANEGDIRNFFDGIAIEKDGIHVTLN-RDGRPSGEAYVVFETEEAAKEALK 200
Query: 136 KDRTNMQHRYIELF 149
+D+ + R+I++F
Sbjct: 201 RDKDKIGERWIDIF 214
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VH+RGLP+ A+ +++ DFF P+ DIH N R GEA V D A+ KD
Sbjct: 46 HAVHLRGLPWNASTKELVDFFAPMDVEDGDIHLVHNSR--GEAYVKLKNESDLETALKKD 103
Query: 138 RTNMQHRYIELFLNS 152
R + RYIE+F +S
Sbjct: 104 RNTIGRRYIEVFRSS 118
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF E ++ FF + + I + RP+GE V+FAT +D AMS++R
Sbjct: 456 VKLRGLPFNVTENNIFSFFEGLTVIGSFICKDVMARPTGEGFVEFATVDDCQLAMSRNRE 515
Query: 140 NMQHRYIELFLNSSSP-RGGVGGSGS 164
+M RY+E+F S +G SG+
Sbjct: 516 SMMDRYVEVFATSKEDVLQQIGASGT 541
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V MRGLPF A + + FF + +I +G+ SGEA V F+T +A +A+ K
Sbjct: 249 VVRMRGLPFEATKSQIRAFFDGINVKESNIFIVTRPDGKASGEAFVLFSTEAEAEKALLK 308
Query: 137 DRTNMQHRYIELFLNSS---SPRGGVG 160
D+ + R+I+LF + R GVG
Sbjct: 309 DKEKLGDRWIDLFATNKGALYQRVGVG 335
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 51 DRWNDRPGGFAGPR-----PGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPV 105
DRW D G G + + R + MRGLPF + ++ FFR
Sbjct: 315 DRWIDLFATNKGALYQRVGVGVKMAAKPDAEFRGVLRMRGLPFASGVEEIRTFFRGYKVQ 374
Query: 106 HVDIHYENG---RPSGEADVDFATHEDAMQAM-SKDRTNMQHRYIELF------LNSSSP 155
+ NG RP+GE+ V F + ++A +A + D+ + R+IELF L +++
Sbjct: 375 EHGVFVVNGGDWRPTGESYVLFDSEDEAERAFKALDKQKIGDRWIELFRSTKGDLYTATV 434
Query: 156 RGGVGG 161
R V G
Sbjct: 435 RSTVLG 440
>gi|123704039|ref|NP_001074045.1| epithelial splicing regulatory protein 1 [Danio rerio]
gi|143360736|sp|A1L1G1.1|ESRP1_DANRE RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|120537378|gb|AAI29045.1| RNA binding motif protein 35A [Danio rerio]
Length = 714
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
V MRGLPF A V FF P PV + + + +GRP+G+A V F+ E A A
Sbjct: 327 IVRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNA 386
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGV 159
+ K + + RYIELF ++++ V
Sbjct: 387 LKKHKDMLGKRYIELFKSTAAEVQQV 412
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFF------RPVVPVHVDIHYENGRPSGEADVDFATHEDAM 131
R V +RGLP+ A+ +D+ F VH+ ++++ GRPSGEA + + E A
Sbjct: 449 RDCVRLRGLPYDASIQDILVFLGEYGADIKTHGVHMVLNHQ-GRPSGEAFIQMRSAERAF 507
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A + + +M+ RY+E+F S+ V G++
Sbjct: 508 LAAQRCHKRSMKERYVEVFACSAQEVNIVLMGGTL 542
>gi|41351452|gb|AAH65688.1| Rbm35b protein [Danio rerio]
Length = 711
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ + MRGLPF A +DV F P PV + + Y +GRP+G+A V FA
Sbjct: 320 SKENQMIIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACE 379
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSS 154
E A A+ K + + RYIELF ++++
Sbjct: 380 EYAQNALKKHKQILGKRYIELFRSTAA 406
Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S + RGLP++++++D+A FF+ + + GR +GEA V F E A
Sbjct: 222 SETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDMA 281
Query: 134 MSKDRTNMQHRYIELF 149
+ + + +M RYIE++
Sbjct: 282 LDRHKHHMGSRYIEVY 297
Score = 40.8 bits (94), Expect = 0.45, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRP----VVP--VHVDIHYENGRPSGEADVDFAT 126
++G +R + +RGLP+ A D+ +F + P VH+ ++ + GRPSG+A + +
Sbjct: 444 TTGNTRDCIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLN-QQGRPSGDAFIQMKS 502
Query: 127 HEDA-MQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
+ A M A + M+ RY+E+F S+ V G++ G S
Sbjct: 503 ADRAFMVAQKCHKKMMKDRYVEVFQCSTEEMSFVLMGGTLNRSGLS 548
>gi|345790896|ref|XP_543410.3| PREDICTED: probable RNA-binding protein 19 [Canis lupus familiaris]
Length = 970
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 55 DRPGGFAGPRPGGRWVNESSGPSR---------------HTVHMRGLPFRANERDVADFF 99
DR AGP G NE G +R +TV +RG PF E++V +F
Sbjct: 258 DRGKPVAGPEQGAPSENEIPGAARAEADKLANQKEPTTPYTVKLRGAPFNVTEKNVLEFL 317
Query: 100 RPVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSP 155
P+ PV + I +G +G VDF + E+ QA+ +R M RYIE+F + P
Sbjct: 318 APLRPVAIRIVRNAHGNKTGYIFVDFRSEEEIKQALKCNREYMGGRYIEIFREKNVP 374
>gi|218185179|gb|EEC67606.1| hypothetical protein OsI_34981 [Oryza sativa Indica Group]
Length = 270
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATH 127
++SS + +RGLP+ A D+ FF ++H +G+ +GEA V+F T
Sbjct: 173 DKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTEENVHIAYRPDGKATGEAFVEFPTA 232
Query: 128 EDAMQAMSKDRTNMQHRYIELF 149
E A AM KD+ + RY+ELF
Sbjct: 233 EVAKTAMCKDKMTIGTRYVELF 254
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V +RGLPF ++ D+ FF + V + ++NGR +GEA V F + A A+ ++R N
Sbjct: 86 VRLRGLPFDCDDLDIFKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQN 145
Query: 141 MQHRYIE 147
M RY+E
Sbjct: 146 MGRRYVE 152
>gi|426374260|ref|XP_004053996.1| PREDICTED: probable RNA-binding protein 19 [Gorilla gorilla
gorilla]
Length = 960
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 57 PGGFAGPRPGG----RWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HY 111
P G P G + N+ + HTV +RG PF E++V +F P+ PV + I
Sbjct: 268 PAGKKRPPEAGAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRN 327
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSP 155
+G +G VDF+ E+ QA+ +R M RYIE+F + P
Sbjct: 328 AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVP 371
>gi|431914230|gb|ELK15488.1| Putative RNA-binding protein 19 [Pteropus alecto]
Length = 949
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 23 ANRFGGGSGPGPIRGGPPRGGFRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVH 82
A + G GSGPGP + P + +P E S P HTV
Sbjct: 256 ARQDGAGSGPGPEQRTPSG------------DKKPQETRAETEKPAIQKEPSTP--HTVK 301
Query: 83 MRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMSKDRTNM 141
+RG PF E++V +F P+ PV + I +G +G VDF++ E+ +A+ +R M
Sbjct: 302 LRGAPFNVTEKNVVEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSSEEEVKKALKCNRDYM 361
Query: 142 QHRYIELFLNSSSP 155
RYIE+F + P
Sbjct: 362 GGRYIEVFREKNVP 375
>gi|428180638|gb|EKX49505.1| hypothetical protein GUITHDRAFT_105029 [Guillardia theta CCMP2712]
Length = 374
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 53 WNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
W + A R G G TV +RGLPF A DV F + V I +
Sbjct: 265 WETQSKALAASRSSG-----VDGKYPATVKLRGLPFGATSLDVMGFLKGYNAVESSIRFG 319
Query: 112 --ENGRPSGEADVDFATHEDAMQAM-SKDRTNMQHRYIELFL 150
++GRPSGEA V F E+A + + KDR ++ +RY+ELFL
Sbjct: 320 NNQDGRPSGEAWVSFNRLEEAKRVVREKDRHHLGNRYVELFL 361
>gi|5912081|emb|CAB55987.1| hypothetical protein [Homo sapiens]
Length = 960
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G VDF+ E+
Sbjct: 286 NQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEE 345
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSP 155
QA+ +R M RYIE+F + P
Sbjct: 346 VKQALKCNREYMGGRYIEVFREKNVP 371
>gi|397525018|ref|XP_003832476.1| PREDICTED: probable RNA-binding protein 19 [Pan paniscus]
Length = 961
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G VDF+ E+
Sbjct: 286 NQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEE 345
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSP 155
QA+ +R M RYIE+F + P
Sbjct: 346 VKQALKCNREYMGGRYIEVFREKNVP 371
>gi|226497574|ref|NP_057280.2| probable RNA-binding protein 19 [Homo sapiens]
gi|226497654|ref|NP_001140170.1| probable RNA-binding protein 19 [Homo sapiens]
gi|226497734|ref|NP_001140171.1| probable RNA-binding protein 19 [Homo sapiens]
gi|308153566|sp|Q9Y4C8.3|RBM19_HUMAN RecName: Full=Probable RNA-binding protein 19; AltName:
Full=RNA-binding motif protein 19
Length = 960
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G VDF+ E+
Sbjct: 286 NQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEE 345
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSP 155
QA+ +R M RYIE+F + P
Sbjct: 346 VKQALKCNREYMGGRYIEVFREKNVP 371
>gi|158256324|dbj|BAF84133.1| unnamed protein product [Homo sapiens]
gi|189054403|dbj|BAG37176.1| unnamed protein product [Homo sapiens]
Length = 960
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G VDF+ E+
Sbjct: 286 NQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEE 345
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSP 155
QA+ +R M RYIE+F + P
Sbjct: 346 VKQALKCNREYMGGRYIEVFREKNVP 371
>gi|422294428|gb|EKU21728.1| rna binding protein, partial [Nannochloropsis gaditana CCMP526]
Length = 572
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 70 VNESSGPSRHTVHMRGLPFRANERDVADFFRP--VVPVHVDIHYEN-GRPSGEADVDFAT 126
V ESS P + V MRGLP+ A E+D+ FF V V +HY++ GR SG+A V F T
Sbjct: 211 VPESSTP-QGVVRMRGLPYSATEKDILAFFSGFGVAEGGVHMHYDHMGRASGQAYVVFET 269
Query: 127 HEDAMQAMSKDRTNMQHRYIELFLNS 152
+A A+ D+ + R+I+LFL+S
Sbjct: 270 VPEAQHALKLDKEKIGERWIDLFLSS 295
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQA-MS 135
+ MRGLPF+ DVA +F V P V I +GRP+GEA V F T EDA+ A +
Sbjct: 387 VLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREA 446
Query: 136 KDRTNMQHRYIELFLNS 152
++ M +R+I+L+L S
Sbjct: 447 LNKQTMNNRWIDLYLAS 463
>gi|296486434|tpg|DAA28547.1| TPA: G-rich RNA sequence binding factor 1 [Bos taurus]
Length = 406
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 252 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 311
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 312 REEIGNRYIEIF 323
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQA 133
+ + +GLP+ DV FF + + IH+ +G+ G+A ++ + +D +A
Sbjct: 151 YLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 210
Query: 134 MSKDRTNMQHRYIELF 149
+ K R M RY+E++
Sbjct: 211 LEKHRMYMGQRYVEVY 226
>gi|13279134|gb|AAH04289.1| RBM19 protein [Homo sapiens]
gi|13544005|gb|AAH06137.1| RBM19 protein [Homo sapiens]
gi|190689379|gb|ACE86464.1| RNA binding motif protein 19 protein [synthetic construct]
gi|190690741|gb|ACE87145.1| RNA binding motif protein 19 protein [synthetic construct]
Length = 960
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G VDF+ E+
Sbjct: 286 NQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEE 345
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSP 155
QA+ +R M RYIE+F + P
Sbjct: 346 VKQALKCNREYMGGRYIEVFREKNVP 371
>gi|168278697|dbj|BAG11228.1| RNA binding motif protein 19 [synthetic construct]
Length = 960
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G VDF+ E+
Sbjct: 286 NQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEE 345
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSP 155
QA+ +R M RYIE+F + P
Sbjct: 346 VKQALKCNREYMGGRYIEVFREKNVP 371
>gi|114647138|ref|XP_522578.2| PREDICTED: probable RNA-binding protein 19 [Pan troglodytes]
gi|410216396|gb|JAA05417.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410216398|gb|JAA05418.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410263956|gb|JAA19944.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410263958|gb|JAA19945.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410292596|gb|JAA24898.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410292598|gb|JAA24899.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410339181|gb|JAA38537.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410339183|gb|JAA38538.1| RNA binding motif protein 19 [Pan troglodytes]
Length = 961
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G VDF+ E+
Sbjct: 286 NQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEE 345
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSP 155
QA+ +R M RYIE+F + P
Sbjct: 346 VKQALKCNREYMGGRYIEVFREKNVP 371
>gi|388507286|gb|AFK41709.1| unknown [Lotus japonicus]
Length = 163
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMS 135
+ MRGLPF + + DFF+ + +H +G+ +GEA V+F + ++A +AMS
Sbjct: 74 EILKMRGLPFAVTKSQIVDFFKDYKLIEDRVHIACRPDGKATGEAYVEFVSPDEAKRAMS 133
Query: 136 KDRTNMQHRYIELF 149
KD+ + RY+ELF
Sbjct: 134 KDKMMIGSRYVELF 147
>gi|346703322|emb|CBX25419.1| hypothetical_protein [Oryza glaberrima]
Length = 291
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATH 127
++SS + +RGLP+ A D+ FF ++H +G+ +GEA V+F T
Sbjct: 194 DKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTEENVHIAYRPDGKATGEAFVEFPTA 253
Query: 128 EDAMQAMSKDRTNMQHRYIELF 149
E A AM KD+ + RY+ELF
Sbjct: 254 EVAKTAMCKDKMTIGTRYVELF 275
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V +RGLPF ++ D+ FF + V + ++NGR +GEA V F + A A+ ++R N
Sbjct: 86 VRLRGLPFDCDDLDICKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQN 145
Query: 141 MQHRYIELF-LNSSSPRGGVGGSGSIGGFGGS 171
M RY+E+F + + GGF S
Sbjct: 146 MGRRYVEVFRCKKQEYYSAIAAEVNQGGFFDS 177
>gi|40788328|dbj|BAA31657.2| KIAA0682 protein [Homo sapiens]
Length = 973
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G VDF+ E+
Sbjct: 299 NQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEE 358
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSP 155
QA+ +R M RYIE+F + P
Sbjct: 359 VKQALKCNREYMGGRYIEVFREKNVP 384
>gi|24646109|ref|NP_731640.1| glorund, isoform C [Drosophila melanogaster]
gi|23171055|gb|AAN13533.1| glorund, isoform C [Drosophila melanogaster]
Length = 179
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFA 125
E+ G S V +RGLP+ A +++ DF V +H+ +G+ +GEA V+ A
Sbjct: 42 ENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVA 101
Query: 126 THEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGF 179
+ ED +A ++ +M HRYIE+F +++P+ I G G + +L G
Sbjct: 102 SQEDVEEARKLNKASMGHRYIEVF--TATPKEAKEAMRKISGHGTAFVVKLRGL 153
>gi|302794117|ref|XP_002978823.1| hypothetical protein SELMODRAFT_443985 [Selaginella moellendorffii]
gi|300153632|gb|EFJ20270.1| hypothetical protein SELMODRAFT_443985 [Selaginella moellendorffii]
Length = 478
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 60/101 (59%), Gaps = 8/101 (7%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP----VHVDIHYENGRPSGEADVDFATHEDAMQAM 134
+ V +RGLPF A E D+ +FFR + + + ++++ GR +G+A V FAT E A +++
Sbjct: 21 NVVRLRGLPFSATEVDIKEFFRGLDLGPDGIVICVNFQ-GRSTGQAYVQFATAELANKSL 79
Query: 135 SKDRTNMQHRYIELFLNSSSPRGG---VGGSGSIGGFGGSG 172
++R ++ RYIE+F + G + G GS G +G +G
Sbjct: 80 ERNRQHIGSRYIEVFKGHPADMQGAMRMAGRGSSGAYGAAG 120
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
+ MRGLP+ + R++ +FF+ +VP ++V I + RP+GEA V+F + ++A +AM
Sbjct: 280 CIKMRGLPYNSGPREITEFFQGYRIVPNGIYVVIGATD-RPTGEAFVEFISSKEAQRAME 338
Query: 136 KDRTNMQHRYIELFLNSSS 154
+ R N+ RYIELF + S
Sbjct: 339 RHRNNIGSRYIELFRATKS 357
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
V MRG+P+ D+ FF+ V P + + H +GRP+GEA V+F E A +AM
Sbjct: 140 VVRMRGMPYSCTSADIMAFFKGMQVAPDGIFLCTH-ADGRPTGEAFVEFINEETAARAMQ 198
Query: 136 KDRTNMQHRYIELF-------LNSSSPRGGVGGSGSIGGFGGSGG--GRLGGFG 180
R M RY+ELF + S + G G++ G G G LGG+G
Sbjct: 199 LHREPMGSRYVELFKSTKGEMMTSVQQKLWFAGVGNMSPVGSLGQIPGMLGGYG 252
>gi|291232399|ref|XP_002736133.1| PREDICTED: fusilli-like [Saccoglossus kowalevskii]
Length = 636
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
V MRGLPF A +DV FF PV + + Y +GR +G+A V F+T +A A
Sbjct: 323 IVRMRGLPFTATAKDVLVFFGDECPVSGAEEGVLFVRYPDGRSTGDAFVLFSTEANATSA 382
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGV 159
++K + N+ RYIELF ++++ V
Sbjct: 383 LAKHKENLGSRYIELFRSTTAEVQQV 408
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 15/129 (11%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFF----RPVVP--VHVDIHYENGRPSGEADVDFAT 126
+SG R + MRGLPF A+ D+ F + P VH+ ++ + GRPSG+A + +
Sbjct: 437 TSGSVRDCIRMRGLPFSASVEDIMKFLGEFAHYIRPHGVHMVLN-QQGRPSGDAFIQMIS 495
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGV--GGSGSIGGFGGSGG-----GRLGG 178
E A+ A + R +M RYIE+F S V GG+ + GG G +
Sbjct: 496 AEKALHAAQQCHRKHMGERYIEVFQCSGDEMNFVLMGGTLNRGGLSPPAGAIPAQAQFTP 555
Query: 179 FGGSDPSSP 187
+ G+ PS P
Sbjct: 556 YPGTIPSPP 564
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 9/77 (11%)
Query: 79 HTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
H + RGLP++++++DVA FF+ + V + ++ GR +GEA V F E
Sbjct: 220 HVIKARGLPWQSSDKDVAKFFKGLDIGKGGVALCLN---PQGRRNGEALVRFTCTEHRDL 276
Query: 133 AMSKDRTNMQHRYIELF 149
A+ + + ++ HRYIE++
Sbjct: 277 ALQRHKHHLGHRYIEVY 293
>gi|302805965|ref|XP_002984733.1| hypothetical protein SELMODRAFT_446014 [Selaginella moellendorffii]
gi|300147715|gb|EFJ14378.1| hypothetical protein SELMODRAFT_446014 [Selaginella moellendorffii]
Length = 483
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 60/101 (59%), Gaps = 8/101 (7%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP----VHVDIHYENGRPSGEADVDFATHEDAMQAM 134
+ V +RGLPF A E D+ +FFR + + + ++++ GR +G+A V FAT E A +++
Sbjct: 21 NVVRLRGLPFSATEVDIKEFFRGLDLGPDGIVICVNFQ-GRSTGQAYVQFATAELANKSL 79
Query: 135 SKDRTNMQHRYIELFLNSSSPRGG---VGGSGSIGGFGGSG 172
++R ++ RYIE+F + G + G GS G +G +G
Sbjct: 80 ERNRQHIGSRYIEVFKGHPADMQGAMRMAGRGSSGAYGAAG 120
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
+ MRGLP+ + R++ +FF+ +VP ++V I + RP+GEA V+F + ++A +AM
Sbjct: 280 CIKMRGLPYNSGPREITEFFQGYRIVPNGIYVVIGATD-RPTGEAFVEFISSKEAQRAME 338
Query: 136 KDRTNMQHRYIELFLNSSS 154
+ R N+ RYIELF + S
Sbjct: 339 RHRNNIGSRYIELFRATKS 357
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
V MRG+P+ D+ FF+ V P + + H +GRP+GEA V+F E A +AM
Sbjct: 140 VVRMRGMPYSCTSADIMAFFKGMQVAPDGIFLCTH-ADGRPTGEAFVEFINEETAARAMQ 198
Query: 136 KDRTNMQHRYIELF-------LNSSSPRGGVGGSGSIGGFGGSGG--GRLGGFG 180
R M RY+ELF + S + G G++ G G G LGG+G
Sbjct: 199 LHREPMGSRYVELFKSTKGEMMTSVQQKLWFAGVGNMSPVGSLGQIPGMLGGYG 252
>gi|63991866|gb|AAY40942.1| unknown [Homo sapiens]
gi|119626039|gb|EAX05634.1| G-rich RNA sequence binding factor 1, isoform CRA_b [Homo sapiens]
Length = 435
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 310
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 311 REEIGNRYIEIF 322
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQAMS 135
+ +GLP+ DV +FF + + IH+ +G+ G+A ++ + +D +A+
Sbjct: 152 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 211
Query: 136 KDRTNMQHRYIELF 149
K R M RY+E++
Sbjct: 212 KHRMYMGQRYVEVY 225
>gi|442755167|gb|JAA69743.1| Putative splicing factor hnrnp-f [Ixodes ricinus]
Length = 279
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFF--RPVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNRITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S G
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEKVG 192
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F + +H I+ GR SGEA V+ + +D A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSGCIIHDGVSGIHF-IYTREGRQSGEAFVELESEDDVKMA 70
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR M HRYIE+F
Sbjct: 71 LKKDRERMGHRYIEVF 86
>gi|440793766|gb|ELR14941.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 622
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKDR 138
V +RGLPF A E ++A++F P+ V I +GRPSG+A +F AMSK+R
Sbjct: 263 VVRLRGLPFSATEEEIANWFAPMPARRVHIILTGSGRPSGDAFAEFDNEAQWEHAMSKNR 322
Query: 139 TNMQHRYIELF 149
+M RY+E+F
Sbjct: 323 QHMGSRYVEIF 333
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 70 VNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDF 124
NE V MRGLPFRA E ++ FF +D +GR +GEA V F
Sbjct: 112 TNEDDLQCAAVVRMRGLPFRATEGEIVAFFEQAGVRVLDGGVLICKNPDGRVTGEAYVQF 171
Query: 125 ATHEDAMQAMSKDRTNMQHRYIELF 149
+ EDA +A+ + R M RYIELF
Sbjct: 172 GSDEDARRALERHRDQMGSRYIELF 196
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPV---------VPVHVDIHYENGRPSGEADVDFATH 127
S V +RGLP++A E D+ +FF+ + +P + +GRP+GE F
Sbjct: 5 SEFVVRLRGLPWQATEDDIKNFFQGLTFAPDGKDGLPSILLALSPSGRPTGEGYAHFDNE 64
Query: 128 EDAMQAMSKDRTNMQHRYIELF 149
E ++A++KD+ M RYIE+F
Sbjct: 65 ETFVKALAKDKERMGQRYIEVF 86
>gi|238013930|gb|ACR38000.1| unknown [Zea mays]
gi|413946698|gb|AFW79347.1| RNA binding protein [Zea mays]
Length = 295
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 72 ESSGPSRHT--VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFAT 126
E G +T + +RGLP+ A D+ FF ++H +G+ +GEA V+F T
Sbjct: 197 EDKGSMEYTEVLKLRGLPYSATTEDIIKFFLEYELTEENVHIAIRSDGKATGEAFVEFPT 256
Query: 127 HEDAMQAMSKDRTNMQHRYIELF 149
E A AM KD+ + RY+ELF
Sbjct: 257 AEVAKTAMCKDKMTIGTRYVELF 279
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V +RGLPF N+ D+ FF + V + +NGR +GEA V F T A+ ++R N
Sbjct: 89 VRLRGLPFDCNDIDICKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQN 148
Query: 141 MQHRYIELF 149
M RY+E+F
Sbjct: 149 MGRRYVEVF 157
>gi|145359708|ref|NP_201402.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332010757|gb|AED98140.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 255
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 61 AGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPS 117
GP R+ + + MRGLP+ N+ + +FF V+ V + +G+ +
Sbjct: 148 TGPSRAKRFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKAT 207
Query: 118 GEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
GEA V+F T E+A +AM+KD+ ++ RY+ELF
Sbjct: 208 GEAFVEFETGEEARRAMAKDKMSIGSRYVELF 239
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF + D+ +FF + V V + +NG+ SGEA V FA A+ +DR
Sbjct: 50 VVRLRGLPFNCADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRH 109
Query: 140 NMQHRYIELF 149
NM RY+E+F
Sbjct: 110 NMGRRYVEVF 119
>gi|324527735|gb|ADY48838.1| Heterogeneous nuclear ribonucleoprotein F, partial [Ascaris suum]
Length = 166
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENG-RPSGEADVDFATHEDAMQAMSKD 137
+ V +RG+PF A D+ +FF + V I E G RPSGEA V A+ E A A+ +
Sbjct: 41 YVVRLRGIPFSATVADIKEFFSGLDVADVVIDKEQGGRPSGEAFVRLASKEHAELALERS 100
Query: 138 RTNMQHRYIELFLNS 152
+ NM RY+E+F +S
Sbjct: 101 KNNMGSRYVEVFRSS 115
>gi|194043009|ref|XP_001928191.1| PREDICTED: probable RNA-binding protein 19 [Sus scrofa]
Length = 967
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMSKD 137
HTV +RG PF E++V +F P+ PV + I +G +G VDF++ E+ +A+ +
Sbjct: 301 HTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYVFVDFSSEEEVKKALQCN 360
Query: 138 RTNMQHRYIELFLNSSSP 155
R M RYIE+F S P
Sbjct: 361 REYMGGRYIEVFREKSIP 378
>gi|428180581|gb|EKX49448.1| hypothetical protein GUITHDRAFT_104977 [Guillardia theta CCMP2712]
Length = 443
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAM-SK 136
V +RGLP+ A DV +FF+ + + I + GRPSGEA V F EDA +A+ K
Sbjct: 357 VKLRGLPYGATTADVLNFFKGLGVLEESITFGINSEGRPSGEAWVSFNRIEDARKAVREK 416
Query: 137 DRTNMQHRYIELFL 150
DR +M RY+ELFL
Sbjct: 417 DRHHMGDRYVELFL 430
>gi|344295376|ref|XP_003419388.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-binding protein
19-like [Loxodonta africana]
Length = 1089
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMSKD 137
+TV +RG PF E++V +F P+ PV + I +G +G VDF++ E+ +A+ +
Sbjct: 294 YTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNSHGNKTGYIFVDFSSEEEVKKALKCN 353
Query: 138 RTNMQHRYIELFLNSSSP 155
R M RYIE+F SSP
Sbjct: 354 REYMGGRYIEVFREKSSP 371
>gi|26251966|gb|AAH40485.1| GRSF1 protein [Homo sapiens]
Length = 435
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVYITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 310
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 311 REEIGNRYIEIF 322
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQAMS 135
+ +GLP+ DV +FF + + IH+ +G+ G+A ++ + +D +A+
Sbjct: 152 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 211
Query: 136 KDRTNMQHRYIELF 149
K R M RY+E++
Sbjct: 212 KHRMYMGQRYVEVY 225
>gi|194744433|ref|XP_001954699.1| GF16612 [Drosophila ananassae]
gi|190627736|gb|EDV43260.1| GF16612 [Drosophila ananassae]
Length = 600
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFA 125
E+ G S + +RGLP+ A +++ DF V +H+ +G+ +GEA V+ +
Sbjct: 45 ENVGESPKFIRLRGLPWSATHKEILDFLENVNVTNGSQGIHLVTSRVDGKNTGEAYVEVS 104
Query: 126 THEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGF 179
T ED +A ++ +M HRYIE+F +++P+ I G G + +L G
Sbjct: 105 TQEDVEEARKLNKASMGHRYIEVF--TATPKEAKEAMRKISGHGNAFVVKLRGL 156
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 61 AGPRPGGRWVNESSGP-SRHTVHMRGLPFRANERDVADFFRPVVPVHVD------IHYEN 113
A P+ + + SG + V +RGLP+ E+ + +FF + + D +
Sbjct: 130 ATPKEAKEAMRKISGHGNAFVVKLRGLPYAVTEQQIEEFFSGL-EIKTDREGILFVMDRR 188
Query: 114 GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
GR +GEA V F + +D QA+ ++R + HRYIE+F +S
Sbjct: 189 GRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSS 227
>gi|413946699|gb|AFW79348.1| hypothetical protein ZEAMMB73_203104 [Zea mays]
Length = 242
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 72 ESSGPSRHT--VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFAT 126
E G +T + +RGLP+ A D+ FF ++H +G+ +GEA V+F T
Sbjct: 144 EDKGSMEYTEVLKLRGLPYSATTEDIIKFFLEYELTEENVHIAIRSDGKATGEAFVEFPT 203
Query: 127 HEDAMQAMSKDRTNMQHRYIELF 149
E A AM KD+ + RY+ELF
Sbjct: 204 AEVAKTAMCKDKMTIGTRYVELF 226
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V +RGLPF N+ D+ FF + V + +NGR +GEA V F T A+ ++R N
Sbjct: 36 VRLRGLPFDCNDIDICKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQN 95
Query: 141 MQHRYIELF 149
M RY+E+F
Sbjct: 96 MGRRYVEVF 104
>gi|10177116|dbj|BAB10406.1| unnamed protein product [Arabidopsis thaliana]
Length = 248
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 61 AGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPS 117
GP R+ + + MRGLP+ N+ + +FF V+ V + +G+ +
Sbjct: 141 TGPSRAKRFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKAT 200
Query: 118 GEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
GEA V+F T E+A +AM+KD+ ++ RY+ELF
Sbjct: 201 GEAFVEFETGEEARRAMAKDKMSIGSRYVELF 232
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF + D+ +FF + V V + +NG+ SGEA V FA A+ +DR
Sbjct: 43 VVRLRGLPFNCADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRH 102
Query: 140 NMQHRYIELF 149
NM RY+E+F
Sbjct: 103 NMGRRYVEVF 112
>gi|170586440|ref|XP_001897987.1| RNA recognition motif. [Brugia malayi]
gi|158594382|gb|EDP32966.1| RNA recognition motif [Brugia malayi]
Length = 573
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 30/142 (21%)
Query: 30 SGPGPIRGGPPRGGFRGGFNNDRWND--RPGG-----FAGPRP----------------G 66
SGP P+RG P FR DR+ D R GG PRP G
Sbjct: 201 SGPVPLRGISPTLDFRF---RDRYADYGRYGGPIRLSSLHPRPSPYDRPYYDRDRYYRYG 257
Query: 67 GRW---VNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADV 122
R+ +E+ V MRGLP+ D+ +FFRP+ V + + Y E R SG+A V
Sbjct: 258 ARYDPEFDEAMYDPTVKVFMRGLPYSVTTLDIEEFFRPLNCVEIKLGYNEERRLSGDALV 317
Query: 123 DFATHEDAMQAMSKDRTNMQHR 144
F+T +A +A+S+++ NM R
Sbjct: 318 TFSTMAEAREALSRNKNNMGTR 339
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDA 130
+S S V +RGLP+ A D+ +FF + I E GRPSGEA V AT E A
Sbjct: 101 DSRYASNFVVRLRGLPYSATIDDIKEFFSGLEVADAVIDKEPGGRPSGEAFVRLATKEYA 160
Query: 131 MQAMSKDRTNMQHRYIELFLNSS 153
A+ + + M RY+E+F +S+
Sbjct: 161 ELALERSKNYMGSRYVEVFRSSA 183
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 42/95 (44%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
P + + +RGLPF A E+D FF NGR SGE V+ E +A
Sbjct: 3 PDTNYIRLRGLPFAAKEQDFFFFFGLNAKSITFTLTSNGRASGECYVELDDQEAVKEAQK 62
Query: 136 KDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGG 170
DR + RYIE+F S + + G I GG
Sbjct: 63 LDRNEINGRYIEVFSVSDAELLMMIRHGVIKSSGG 97
>gi|159164063|pdb|2DB1|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein F Homolog
Length = 118
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
+ V +RGLP+ + DV +F V VH I+ GR SGEA V+ + +D
Sbjct: 18 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESEDDVKL 76
Query: 133 AMSKDRTNMQHRYIELF 149
A+ KDR +M HRYIE+F
Sbjct: 77 ALKKDRESMGHRYIEVF 93
>gi|302782846|ref|XP_002973196.1| hypothetical protein SELMODRAFT_413714 [Selaginella moellendorffii]
gi|300158949|gb|EFJ25570.1| hypothetical protein SELMODRAFT_413714 [Selaginella moellendorffii]
Length = 289
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 7/79 (8%)
Query: 77 SRHT--VHMRGLPFRANERDVADFFRPV----VPVHVDIHYENGRPSGEADVDFATHEDA 130
+ HT + +RGLPF A++RD+ +FFR V + +H +GR +GEA V F D+
Sbjct: 197 AEHTGVLKLRGLPFSASKRDIVEFFREFGLKEDSVQIVVH-SDGRATGEAYVFFLGPGDS 255
Query: 131 MQAMSKDRTNMQHRYIELF 149
AM+KD+ + +RY+ELF
Sbjct: 256 KAAMNKDKMTLGNRYVELF 274
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF +E DV +FF + V V + + GR SGEA V A+ ++R
Sbjct: 66 VVRLRGLPFNCSESDVFEFFAGLDVVDVLLVRKQGRFSGEAFVVLGAPMQVDFALQRNRQ 125
Query: 140 NMQHRYIELF 149
NM RY+E+F
Sbjct: 126 NMGRRYVEVF 135
>gi|302789778|ref|XP_002976657.1| hypothetical protein SELMODRAFT_416554 [Selaginella moellendorffii]
gi|300155695|gb|EFJ22326.1| hypothetical protein SELMODRAFT_416554 [Selaginella moellendorffii]
Length = 287
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 7/79 (8%)
Query: 77 SRHT--VHMRGLPFRANERDVADFFRPV----VPVHVDIHYENGRPSGEADVDFATHEDA 130
+ HT + +RGLPF A++RD+ +FFR V + +H +GR +GEA V F D+
Sbjct: 195 AEHTGVLKLRGLPFSASKRDIVEFFREFGLKEDSVQIVVH-SDGRATGEAYVFFLGPGDS 253
Query: 131 MQAMSKDRTNMQHRYIELF 149
AM+KD+ + +RY+ELF
Sbjct: 254 KAAMNKDKMTLGNRYVELF 272
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF +E DV +FF + V V + + GR SGEA V A+ ++R
Sbjct: 66 VVRLRGLPFNCSESDVFEFFAGLDVVDVLLVRKQGRFSGEAFVVLGAPMQVDFALQRNRQ 125
Query: 140 NMQHRYIELF 149
NM RY+E+F
Sbjct: 126 NMGRRYVEVF 135
>gi|219111791|ref|XP_002177647.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410532|gb|EEC50461.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 245
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 66/145 (45%), Gaps = 20/145 (13%)
Query: 29 GSGPGPIRGGPPRGGFRGGFNNDRW---------NDRPGGFAGPRP----GGRWVNESSG 75
G G + PP+GG+ G + R GG P GG V E +G
Sbjct: 96 GGSQGGMNSLPPQGGYGEGMQHHGLLGMGPRLTGMSRQGGIHTPLQKRTGGGIQVGEHTG 155
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVH--VDIHYEN-GRPSGEADVDFATHEDAMQ 132
R +RGLPF A D+ FF P V + Y N GR +GEA + FAT +D+ +
Sbjct: 156 FLR----VRGLPFSATRDDIFKFFLGYNPTQESVVLTYRNDGRATGEAYIGFATADDSKR 211
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM R M RY+ELF+++ G
Sbjct: 212 AMELHRRVMGSRYVELFISNKDEHG 236
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 83 MRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQ 142
+R LP+ A D+ F+ +V + V I + G+A V FA D A+ +DR +
Sbjct: 7 LRNLPYDAALEDILILFQGLVVIDVVISSQ-----GDAFVIFANPMDFQMALQRDRQTIG 61
Query: 143 HRYIELFLNSSS--------PRGGVGGSGSIGGFGGSGGG 174
R++E+ + S G S +GGS GG
Sbjct: 62 RRFVEIVAATRSEYYDAIAKKSAGESASAMASLWGGSQGG 101
>gi|449434084|ref|XP_004134826.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
sativus]
Length = 263
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 68 RWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDF 124
R+ ++ + +RGLPF + ++ +FF IH +G+ +GEA V+F
Sbjct: 163 RFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEF 222
Query: 125 ATHEDAMQAMSKDRTNMQHRYIELF 149
A+ E+A +AMSKD+ + RY+ELF
Sbjct: 223 ASAEEAKRAMSKDKMTIGSRYVELF 247
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF + D+ FF + V V + +NGR GEA V FA A+ +DR
Sbjct: 59 VVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQ 118
Query: 140 NMQHRYIELF 149
NM RY+E+F
Sbjct: 119 NMGRRYVEVF 128
>gi|334312966|ref|XP_003339804.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 2-like [Monodelphis domestica]
Length = 1253
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
+ MRGLPF A DV F P PV + +HY +GRP+G+A FA E A A
Sbjct: 881 IIRMRGLPFTATPGDVLAFLGPECPVTGGPEGLLFVHYPDGRPTGDAFALFACEELAQGA 940
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGV 159
+ K + + RYIEL S +P GV
Sbjct: 941 LRKHKGILGKRYIEL---SGAPPSGV 963
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 78 RHTVHMRGLPFRANERDVADFF-------RPVVPVHVDIHYENGRPSGEADVDFATHEDA 130
R V +RGLP+ A+ D+ F RP VH+ ++ + GRPSG+A + + + A
Sbjct: 999 RDCVRLRGLPYTASIDDILGFLGEAAGDIRPHG-VHMVLN-QQGRPSGDAFIQMKSADRA 1056
Query: 131 MQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ A + + M+ RY+E+F S V GS+
Sbjct: 1057 LVAAQRCHKKMMKERYVEVFPCSGEEMSLVLMGGSL 1092
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 14/82 (17%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHY---------ENGRPSGEADVDFATHEDA 130
V RGLP++++++D+A FF+ ++I GR +GEA V F E
Sbjct: 779 VVRARGLPWQSSDQDIARFFK-----GLNIAKGGRGPCAXNAQGRRTGEALVRFVDSEQR 833
Query: 131 MQAMSKDRTNMQHRYIELFLNS 152
++ + + +M RYIE++ S
Sbjct: 834 DLSLERHKHHMGARYIEVYKAS 855
>gi|449491253|ref|XP_004158841.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
sativus]
Length = 256
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 68 RWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDF 124
R+ ++ + +RGLPF + ++ +FF IH +G+ +GEA V+F
Sbjct: 156 RFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEF 215
Query: 125 ATHEDAMQAMSKDRTNMQHRYIELF 149
A+ E+A +AMSKD+ + RY+ELF
Sbjct: 216 ASAEEAKRAMSKDKMTIGSRYVELF 240
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF + D+ FF + V V + +NGR GEA V FA A+ +DR
Sbjct: 52 VVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQ 111
Query: 140 NMQHRYIELF 149
NM RY+E+F
Sbjct: 112 NMGRRYVEVF 121
>gi|351694750|gb|EHA97668.1| Putative RNA-binding protein 19 [Heterocephalus glaber]
Length = 955
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G VDF++ E+
Sbjct: 281 NQKEPTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSSEEE 340
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSP 155
+A+ +R M RYIE+F P
Sbjct: 341 VKKALKCNREYMGGRYIEVFREKQVP 366
>gi|403281594|ref|XP_003932266.1| PREDICTED: probable RNA-binding protein 19 [Saimiri boliviensis
boliviensis]
Length = 960
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV V I +G +G VDF+ E+
Sbjct: 286 NQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAVRIVRNAHGNKTGYIFVDFSNEEE 345
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSP 155
+A+ +R M RYIE+F + P
Sbjct: 346 VKKALKCNREYMGGRYIEVFREKNVP 371
>gi|226500358|ref|NP_001148837.1| LOC100282455 [Zea mays]
gi|195622512|gb|ACG33086.1| RNA binding protein [Zea mays]
gi|238009718|gb|ACR35894.1| unknown [Zea mays]
Length = 303
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF N+ DV FF + V + +NGR +GEA V F T A A+ +DR
Sbjct: 97 CVRLRGLPFDCNDIDVCKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQAEFALHRDRQ 156
Query: 140 NMQHRYIELF 149
NM RY+E+F
Sbjct: 157 NMGRRYVEVF 166
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 72 ESSGPSRHT--VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFAT 126
E G +T + +RGLP+ A D+ FF ++H +G+ +GEA V+F T
Sbjct: 205 EDKGSMEYTEVLKLRGLPYSATTEDIIKFFLEYELAEENVHIAYRSDGKATGEAFVEFPT 264
Query: 127 HEDAMQAMSKDRTNMQHRYIELF 149
E A AM KD+ + RY+ELF
Sbjct: 265 AEVAKTAMCKDKMTIGTRYVELF 287
>gi|324509132|gb|ADY43846.1| Heterogeneous nuclear ribonucleoprotein F [Ascaris suum]
Length = 192
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHED 129
+ES S + V +RGLP+ AN D+ +FF+ + V I E GRPSGEA V A+ E
Sbjct: 99 SESRYASNYVVRLRGLPYSANVDDIKEFFKGLDVADVVIDKEQGGRPSGEAFVRLASKEH 158
Query: 130 AMQAMSKDRTNMQHRY 145
A A+ + + NM RY
Sbjct: 159 AELALERSKNNMGSRY 174
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAM 134
P + + +RGLPF A E DV +F + + + +GR SGE V+ + +A+
Sbjct: 3 PETNFIRLRGLPFAAKESDVRNFLQGITAKSITFTLTSSGRASGECYVELNDNSAVKEAL 62
Query: 135 SKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
DR + RYIE+F S + G I G G S
Sbjct: 63 KLDRNEINGRYIEVFTVSEGELAMMVRHGVIRGSGES 99
>gi|402911169|ref|XP_003918213.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like, partial
[Papio anubis]
Length = 256
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH-----VDIHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|357143317|ref|XP_003572878.1| PREDICTED: G-rich sequence factor 1-like isoform 1 [Brachypodium
distachyon]
Length = 292
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATH 127
++SS + +RGLP+ A D+ FF ++H +G+ +GEA V+F T
Sbjct: 195 DKSSMDYTEVLKLRGLPYSATIEDIIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTA 254
Query: 128 EDAMQAMSKDRTNMQHRYIELF 149
E A AM KD+ + RY+ELF
Sbjct: 255 EVAKTAMCKDKMTIGTRYVELF 276
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V +RGLPF + D+ FF + V + ++NGR SGEA V F + A A+ ++R N
Sbjct: 87 VRLRGLPFDCEDLDIIKFFVGLDIVDCLLVHKNGRFSGEAFVVFPSTMQAEFALHRNRQN 146
Query: 141 MQHRYIELF-LNSSSPRGGVGGSGSIGGFGGS 171
M RY+E+F V + GGF S
Sbjct: 147 MGRRYVEVFRCKKQEYYSAVASEVNQGGFFDS 178
>gi|402594752|gb|EJW88678.1| hypothetical protein WUBG_00416 [Wuchereria bancrofti]
Length = 154
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 30/142 (21%)
Query: 30 SGPGPIRGGPPRGGFRGGFNNDRWND--RPGG-----FAGPRP----------------G 66
SGP P+RG P FR DR+ D R GG PRP G
Sbjct: 16 SGPVPLRGISPTLDFRF---RDRYADYGRYGGPIRLSSLHPRPSPYDRPYYDRDRYYRYG 72
Query: 67 GRW---VNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADV 122
R+ +E+ V MRGLP+ D+ +FFRP+ V + + Y E R SG+A V
Sbjct: 73 ARYDPEFDEAMYDPTVKVFMRGLPYSVTTLDIEEFFRPLNCVEIKLGYNEERRLSGDALV 132
Query: 123 DFATHEDAMQAMSKDRTNMQHR 144
F+T +A +A+S+++ NM R
Sbjct: 133 TFSTMAEAREALSRNKNNMGTR 154
>gi|380792639|gb|AFE68195.1| heterogeneous nuclear ribonucleoprotein H, partial [Macaca mulatta]
Length = 269
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPV-----VPVHVDIHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF P I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAPGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|308464398|ref|XP_003094466.1| CRE-TWK-4 protein [Caenorhabditis remanei]
gi|308247695|gb|EFO91647.1| CRE-TWK-4 protein [Caenorhabditis remanei]
Length = 1026
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH--VDIHYENGRPSGEADVDFATHEDAMQAMSKDR 138
V MRGLP+ + + FF P+ + I +GRP+G+A V F T EDA + + K R
Sbjct: 685 VRMRGLPYDCTDTQIRAFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQKGLLKHR 744
Query: 139 TNMQHRYIELFLNSSS 154
+ RYIELF ++++
Sbjct: 745 QIIGQRYIELFKSTAA 760
Score = 45.1 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 84 RGLPFRANERDVADFFR--PVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTN 140
RGLP++A+++ VA FF +VP + + + GR +GE V FAT E A+ + R
Sbjct: 588 RGLPWQASDQHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFATQESRDLALKRHRNF 647
Query: 141 MQHRYIELF 149
+ RYIE++
Sbjct: 648 LLSRYIEVY 656
>gi|397500915|ref|XP_003821148.1| PREDICTED: epithelial splicing regulatory protein 1-like [Pan
paniscus]
Length = 422
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 320 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 379
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVG 160
E A A+ K + + RYIELF ++++ VG
Sbjct: 380 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQVG 412
>gi|388513407|gb|AFK44765.1| unknown [Medicago truncatula]
Length = 158
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 53 WNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE 112
++D G P R+ ++ + MRGLPF + + DFF+ + +H
Sbjct: 43 YDDDYQGSPPPSRSKRFSDKEQMDYTEILKMRGLPFLVTKSQIIDFFKDYKLIEGRVHIA 102
Query: 113 ---NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+G+ +GEA V+F + ++A +AM KD+ + RY+ELF
Sbjct: 103 CRPDGKATGEAYVEFVSPDEAKRAMFKDKMTIGSRYVELF 142
>gi|198421641|ref|XP_002120551.1| PREDICTED: similar to RNA-binding protein 35B (RNA-binding motif
protein 35B) [Ciona intestinalis]
Length = 772
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 6/81 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
V MRGLPF A RD+ +FF +PV + + + +GRP+G+A V F + + A+ A
Sbjct: 355 IVRMRGLPFTAGPRDIVEFFGDEIPVAHGEEGVLLVKFADGRPTGDAFVLFTSEKFAVAA 414
Query: 134 MSKDRTNMQHRYIELFLNSSS 154
++K + + RY+E+F ++++
Sbjct: 415 LNKHKLTLGKRYVEIFKSTAA 435
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 13/104 (12%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFF----RPVVP--VHVDIHYENGRPSGEADVDFATH 127
+G R+ + +RG+P+ A D+ F ++P +H+ ++ + GRPSG+A + ++
Sbjct: 468 AGAIRNCIRLRGMPYSATVEDITSFLGELANSILPHGIHMVLN-QQGRPSGDAFIQLSSV 526
Query: 128 EDAMQA---MSK---DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
E QA +SK + +M RY+E+F S V G++
Sbjct: 527 EKCSQAALDVSKGGCHKRHMGERYVEVFQCSGDEMNMVLMGGTL 570
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSK- 136
V M+G+P+ A D+ FF+ + + + Y + RP+GEA V F + E++ +A+ +
Sbjct: 698 VRMQGMPYNAGVADIMAFFKGYNLNSESIKLIYNDKLRPTGEALVTFPSLEESHRAVVEN 757
Query: 137 DRTNMQHRYIELFL 150
+R M +RYIEL L
Sbjct: 758 NRKLMGNRYIELLL 771
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Query: 51 DRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPV-VPV--HV 107
+R DR GP +N+++ V RGLP++A++ DVA FF+ + +P
Sbjct: 232 ERVTDRLE--TGPCMTSELINDNT-----VVRARGLPWQASDHDVARFFKGLNIPRGGAA 284
Query: 108 DIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+ GR +GEA V F + A+ + + +M RYIE++
Sbjct: 285 LVLNPQGRRNGEALVRFENEQQRDLALLRHKHHMASRYIEVY 326
>gi|340382973|ref|XP_003389992.1| PREDICTED: probable RNA-binding protein 19-like [Amphimedon
queenslandica]
Length = 660
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKD 137
HT+ MRGLP+ A+E+ V FF P+ ++ + ++ R SG A VD + D +AM ++
Sbjct: 271 HTIRMRGLPYDASEKHVHKFFSPIQLSNIRLLKDDRERCSGLAFVDVMSKTDLKEAMKRN 330
Query: 138 RTNMQHRYIELFLNSSSPRGGV 159
+ M RYIEL +++ S V
Sbjct: 331 KGRMGRRYIELVVDTGSKEKTV 352
>gi|281343470|gb|EFB19054.1| hypothetical protein PANDA_014807 [Ailuropoda melanoleuca]
Length = 947
Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 18/110 (16%)
Query: 56 RPGGFAGPRPGGRWVNESSGPSR---------------HTVHMRGLPFRANERDVADFFR 100
RPG AGP G NE+ G +R +TV +RG PF E+ V +F
Sbjct: 248 RPG--AGPEQGVPSGNETPGTARAEADKAAHQKEPTTPYTVKLRGAPFNVTEKSVTEFLA 305
Query: 101 PVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
P+ PV + I +G +G VDF++ E+ QA+ R M RYIE+F
Sbjct: 306 PLRPVAIRIVRNAHGNKTGYIFVDFSSEEEVKQALKCHREYMGGRYIEVF 355
>gi|159164103|pdb|2DHA|A Chain A, Solution Structure Of The Second Rna Recognition Motif In
Hypothetical Protein Flj201171
Length = 123
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 19 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 78
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 79 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 110
>gi|348551182|ref|XP_003461409.1| PREDICTED: probable RNA-binding protein 19-like [Cavia porcellus]
Length = 961
Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + +TV +RG PF E++V +F P+ PV + I +G +G VDF++ E+
Sbjct: 286 NQKEPTTPYTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSSEEE 345
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSP 155
+A+ +R M RYIE+F +P
Sbjct: 346 VKKALKCNREYMGGRYIEVFREKQAP 371
>gi|332250675|ref|XP_003274476.1| PREDICTED: probable RNA-binding protein 19 [Nomascus leucogenys]
Length = 997
Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G DF+ E+
Sbjct: 323 NQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFADFSNEEE 382
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSP 155
QA+ +R M RYIE+F + P
Sbjct: 383 VKQALKCNREYMGGRYIEVFREKNIP 408
>gi|334188661|ref|NP_001190629.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332010758|gb|AED98141.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 158
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 61 AGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPS 117
GP R+ + + MRGLP+ N+ + +FF V+ V + +G+ +
Sbjct: 51 TGPSRAKRFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKAT 110
Query: 118 GEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
GEA V+F T E+A +AM+KD+ ++ RY+ELF
Sbjct: 111 GEAFVEFETGEEARRAMAKDKMSIGSRYVELF 142
>gi|444525895|gb|ELV14190.1| Epithelial splicing regulatory protein 1, partial [Tupaia
chinensis]
Length = 689
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 332 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 391
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A A+ K + + RYIELF ++++ V + F +
Sbjct: 392 EYAQNALRKHKDLLGKRYIELFRSTAAEVQKVFKIQVLNRFSSA 435
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 460 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 518
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 519 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 553
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 237 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 296
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 297 HKHHMGTRYIEVY 309
>gi|345793292|ref|XP_544182.3| PREDICTED: epithelial splicing regulatory protein 1 [Canis lupus
familiaris]
Length = 764
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 404 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 463
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSS 154
E A A+ K + + RYIELF ++++
Sbjct: 464 EYAQNALRKHKDLLGKRYIELFRSTAA 490
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 527 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 585
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 586 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 620
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 309 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 368
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 369 HKHHMGTRYIEVY 381
>gi|239052941|ref|NP_001131830.2| uncharacterized protein LOC100193205 [Zea mays]
gi|223943183|gb|ACN25675.1| unknown [Zea mays]
gi|238908614|gb|ACF80415.2| unknown [Zea mays]
Length = 241
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 72 ESSGPSRHT--VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFAT 126
E G +T + +RGLP+ A D+ FF ++H +G+ +GEA V+F T
Sbjct: 143 EDKGSMEYTEVLKLRGLPYSATTEDIIKFFLEYELTEENVHIAISSDGKATGEAFVEFPT 202
Query: 127 HEDAMQAMSKDRTNMQHRYIELF 149
E A M KD+ + RY+ELF
Sbjct: 203 TEVAKTVMCKDKMTIGTRYVELF 225
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V +RGLPF N+ D+ FF + V + +NGR +GEA V F T A+ ++R N
Sbjct: 35 VRLRGLPFDCNDIDICKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQN 94
Query: 141 MQHRYIELF 149
M RY+E+F
Sbjct: 95 MGRRYVEVF 103
>gi|302828822|ref|XP_002945978.1| splicing factor like protein [Volvox carteri f. nagariensis]
gi|300268793|gb|EFJ52973.1| splicing factor like protein [Volvox carteri f. nagariensis]
Length = 578
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
V RGLP+ A +DV +FF PV V + +GRP+GEA V+F T + +A
Sbjct: 129 VVRCRGLPYTATAQDVLNFFGSDAPVVRGIEGVVFTYAPDGRPTGEAFVEFQTEDAQREA 188
Query: 134 MSKDRTNMQHRYIELFLNS 152
+ K + +M RYIELF+++
Sbjct: 189 LKKHKESMGARYIELFVST 207
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
P + +RGLPF A E DV FF V I GR +GE V + A +A+
Sbjct: 33 PKSSVLRLRGLPFSAGEEDVRHFFSGFNVAQVVIGKRAGRSTGEGYVQLDSTSAAAEAIM 92
Query: 136 K-DRTNMQHRYIELFLNSSS 154
K R + HRYIE+F ++ +
Sbjct: 93 KLHRQTLGHRYIEVFESTEA 112
>gi|357143320|ref|XP_003572879.1| PREDICTED: G-rich sequence factor 1-like isoform 2 [Brachypodium
distachyon]
Length = 274
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATH 127
++SS + +RGLP+ A D+ FF ++H +G+ +GEA V+F T
Sbjct: 177 DKSSMDYTEVLKLRGLPYSATIEDIIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTA 236
Query: 128 EDAMQAMSKDRTNMQHRYIELF 149
E A AM KD+ + RY+ELF
Sbjct: 237 EVAKTAMCKDKMTIGTRYVELF 258
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V +RGLPF + D+ FF + V + ++NGR SGEA V F + A A+ ++R N
Sbjct: 69 VRLRGLPFDCEDLDIIKFFVGLDIVDCLLVHKNGRFSGEAFVVFPSTMQAEFALHRNRQN 128
Query: 141 MQHRYIELF-LNSSSPRGGVGGSGSIGGFGGS 171
M RY+E+F V + GGF S
Sbjct: 129 MGRRYVEVFRCKKQEYYSAVASEVNQGGFFDS 160
>gi|297612598|ref|NP_001066073.2| Os12g0131000 [Oryza sativa Japonica Group]
gi|255670013|dbj|BAF29092.2| Os12g0131000 [Oryza sativa Japonica Group]
Length = 292
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATH 127
++SS + +RGLP+ A D+ FF ++H +G+ +GEA V+F T
Sbjct: 195 DKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTDENVHIVYRPDGKATGEAYVEFPTA 254
Query: 128 EDAMQAMSKDRTNMQHRYIELF 149
E AM KD+ + RY+ELF
Sbjct: 255 EVVKTAMCKDKMTIGTRYVELF 276
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V +RGLPF ++ D+ FF + V + ++NGR +GEA V F + A A+ ++R N
Sbjct: 87 VRLRGLPFDCDDLDICKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQN 146
Query: 141 MQHRYIELF-LNSSSPRGGVGGSGSIGGFGGS 171
M RY+E+F + + GGF S
Sbjct: 147 MGRRYVEVFRCKKQEYYSAIAAEVNQGGFFDS 178
>gi|222616578|gb|EEE52710.1| hypothetical protein OsJ_35118 [Oryza sativa Japonica Group]
Length = 291
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATH 127
++SS + +RGLP+ A D+ FF ++H +G+ +GEA V+F T
Sbjct: 194 DKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTDENVHIVYRPDGKATGEAYVEFPTA 253
Query: 128 EDAMQAMSKDRTNMQHRYIELF 149
E AM KD+ + RY+ELF
Sbjct: 254 EVVKTAMCKDKMTIGTRYVELF 275
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V +RGLPF ++ D+ FF + V + ++NGR +GEA V F + A A+ ++R N
Sbjct: 86 VRLRGLPFDCDDLDICKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQN 145
Query: 141 MQHRYIELF-LNSSSPRGGVGGSGSIGGFGGS 171
M RY+E+F + + GGF S
Sbjct: 146 MGRRYVEVFRCKKQEYYSAIAAEVNQGGFFDS 177
>gi|238006754|gb|ACR34412.1| unknown [Zea mays]
Length = 251
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF N+ DV FF + V + +NGR +GEA V F T A A+ +DR
Sbjct: 45 CVRLRGLPFDCNDIDVCKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQAEFALHRDRQ 104
Query: 140 NMQHRYIELF 149
NM RY+E+F
Sbjct: 105 NMGRRYVEVF 114
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 72 ESSGPSRHT--VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFAT 126
E G +T + +RGLP+ A D+ FF ++H +G+ +GEA V+F T
Sbjct: 153 EDKGSMEYTEVLKLRGLPYSATTEDIIKFFLEYELAEENVHIAYRSDGKATGEAFVEFPT 212
Query: 127 HEDAMQAMSKDRTNMQHRYIELF 149
E A AM KD+ + RY+ELF
Sbjct: 213 AEVAKTAMCKDKMTIGTRYVELF 235
>gi|194214277|ref|XP_001492007.2| PREDICTED: probable RNA-binding protein 19 [Equus caballus]
Length = 962
Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMSKD 137
HTV +RG PF E++V +F P+ PV + I +G +G VDF++ E+ +A+ +
Sbjct: 296 HTVKLRGAPFNVTEKNVVEFLAPLKPVAIRIVRNAHGNKTGYVFVDFSSEEEVKKALKCN 355
Query: 138 RTNMQHRYIELFLNSSSP 155
R M RYIE+F + P
Sbjct: 356 REYMGGRYIEVFREKNIP 373
>gi|359063387|ref|XP_002685850.2| PREDICTED: epithelial splicing regulatory protein 1 [Bos taurus]
Length = 1157
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSS 154
E A A+ K + + RYIELF ++++
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAA 407
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYVATTEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
>gi|223944441|gb|ACN26304.1| unknown [Zea mays]
Length = 284
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 72 ESSGPSRHT--VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFAT 126
E G +T + +RGLP+ A D+ FF ++H +G+ +GEA V+F T
Sbjct: 186 EDKGSMEYTEVLKLRGLPYSATTEDIIKFFLEYELTEENVHIAISSDGKATGEAFVEFPT 245
Query: 127 HEDAMQAMSKDRTNMQHRYIELF 149
E A M KD+ + RY+ELF
Sbjct: 246 TEVAKTVMCKDKMTIGTRYVELF 268
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V +RGLPF N+ D+ FF + V + +NGR +GEA V F T A+ ++R N
Sbjct: 78 VRLRGLPFDCNDIDICKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQN 137
Query: 141 MQHRYIELF 149
M RY+E+F
Sbjct: 138 MGRRYVEVF 146
>gi|297797787|ref|XP_002866778.1| RNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297312613|gb|EFH43037.1| RNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 255
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 63 PRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
P R+ + + MRGLP+ N+ + +FF V+ V + +G+ +GE
Sbjct: 150 PSRAKRFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIEGRVQVVCRPDGKATGE 209
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
A V+F T E+A +AM+KD+ ++ RY+ELF
Sbjct: 210 AFVEFETGEEARRAMAKDKMSIGSRYVELF 239
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF + D+ FF + V V + +NG+ SGEA V FA ++ +DR
Sbjct: 50 VVRLRGLPFNCADIDIFKFFSGLDIVDVLLVSKNGKFSGEAFVVFAGPMQVEISLQRDRH 109
Query: 140 NMQHRYIELF 149
NM RY+E+F
Sbjct: 110 NMGRRYVEVF 119
>gi|340382975|ref|XP_003389993.1| PREDICTED: probable RNA-binding protein 19-like [Amphimedon
queenslandica]
Length = 866
Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKD 137
HT+ MRGLP+ A+E+ V FF P+ ++ + ++ R SG A VD + D +AM ++
Sbjct: 246 HTIRMRGLPYDASEKHVHKFFSPIQLSNIRLLKDDRERCSGLAFVDVMSETDLKEAMKRN 305
Query: 138 RTNMQHRYIELFLNSSS 154
+ M RYIEL +++ S
Sbjct: 306 KGRMGRRYIELVVDTGS 322
>gi|224064269|ref|XP_002191895.1| PREDICTED: epithelial splicing regulatory protein 2 [Taeniopygia
guttata]
Length = 702
Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ MRGLPF A + DV F PV + + Y +GRP+G+A V F+ E A A+
Sbjct: 329 IRMRGLPFTATQEDVLGFLGSECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNAL 388
Query: 135 SKDRTNMQHRYIELFLNSSS 154
K + + RYIELF ++++
Sbjct: 389 KKHKEILGKRYIELFRSTAA 408
Score = 42.4 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S + RGLP++++++D+A FF+ + + GR +GEA V F E A
Sbjct: 224 SETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNSQGRRNGEALVRFVNSEQRDLA 283
Query: 134 MSKDRTNMQHRYIELF 149
+ + + +M RYIE++
Sbjct: 284 LERHKHHMGSRYIEVY 299
Score = 41.2 bits (95), Expect = 0.32, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVV------PVHVDIHYENGRPSGEADVDFAT 126
++G R V +RGLP+ A D+ +F VH+ ++ + GRPSG+A + +
Sbjct: 441 ATGSIRDCVRLRGLPYTAGIDDILEFMGDATGDIKPHGVHMVLN-QQGRPSGDAFIQMKS 499
Query: 127 HEDA-MQAMSKDRTNMQHRYIELF 149
+ A M A + M+ RY+E+F
Sbjct: 500 ADKAFMVAQKCHKKMMKDRYVEVF 523
>gi|346703709|emb|CBX24377.1| hypothetical_protein [Oryza glaberrima]
Length = 291
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATH 127
++SS + +RGLP+ A ++ FF ++H +G+ +GEA V+F T
Sbjct: 194 DKSSMEYTEVLKLRGLPYSATTEEIIKFFVEYELTDENVHIVYRPDGKATGEAYVEFPTA 253
Query: 128 EDAMQAMSKDRTNMQHRYIELF 149
E A AM KD+ + RY+ELF
Sbjct: 254 EVAKTAMCKDKMTIGTRYVELF 275
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V +RGLPF ++ D+ FF + V + ++NGR +GEA V F + A A+ ++R N
Sbjct: 86 VRLRGLPFDCDDLDICKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQN 145
Query: 141 MQHRYIELF-LNSSSPRGGVGGSGSIGGFGGS 171
M RY+E+F + + GGF S
Sbjct: 146 MGRRYVEVFRCKKQEYYSAIAAEVNQGGFFDS 177
>gi|351713464|gb|EHB16383.1| Epithelial splicing regulatory protein 1 [Heterocephalus glaber]
Length = 677
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 315 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 374
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSS 154
E A A+ K + + RYIELF ++++
Sbjct: 375 EYAQNALRKHKDLLGKRYIELFRSTAA 401
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 440 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 498
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 499 MASQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 533
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 220 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 279
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 280 HKHHMGTRYIEVY 292
>gi|148667169|gb|EDK99585.1| mCG133010, isoform CRA_b [Mus musculus]
Length = 149
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
+ V +RGLP+ + DV +F V VH I+ GR SGEA V+ + +D
Sbjct: 11 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESEDDVKL 69
Query: 133 AMSKDRTNMQHRYIELF 149
A+ KDR +M HRYIE+F
Sbjct: 70 ALKKDRESMGHRYIEVF 86
>gi|119612126|gb|EAW91720.1| RNA binding motif protein 35A, isoform CRA_a [Homo sapiens]
Length = 503
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 161 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 220
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSS 154
E A A+ K + + RYIELF ++++
Sbjct: 221 EYAQNALRKHKDLLGKRYIELFRSTAA 247
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 284 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 342
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 343 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 377
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 66 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 125
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 126 HKHHMGTRYIEVY 138
>gi|112491340|pdb|2HGL|A Chain A, Nmr Structure Of The First Qrrm Domain Of Human Hnrnp F
gi|297787485|pdb|2KFY|A Chain A, Nmr Structure Of The First Qrrm Of Hnrnp F In Complex With
Agggau G- Tract Rna
Length = 136
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F VH I+ GR SGEA V+ + +D A
Sbjct: 46 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHF-IYTREGRQSGEAFVELGSEDDVKMA 104
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 105 LKKDRESMGHRYIEVF 120
>gi|301779826|ref|XP_002925333.1| PREDICTED: probable RNA-binding protein 19-like [Ailuropoda
melanoleuca]
Length = 963
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 18/110 (16%)
Query: 56 RPGGFAGPRPGGRWVNESSGPSR---------------HTVHMRGLPFRANERDVADFFR 100
RPG AGP G NE+ G +R +TV +RG PF E+ V +F
Sbjct: 260 RPG--AGPEQGVPSGNETPGTARAEADKAAHQKEPTTPYTVKLRGAPFNVTEKSVTEFLA 317
Query: 101 PVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
P+ PV + I +G +G VDF++ E+ QA+ R M RYIE+F
Sbjct: 318 PLRPVAIRIVRNAHGNKTGYIFVDFSSEEEVKQALKCHREYMGGRYIEVF 367
>gi|296088657|emb|CBI37648.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
P+ V +RGLPF + D+ FF + V V + ++GR SGEA V FA A A+
Sbjct: 55 PTFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQ 114
Query: 136 KDRTNMQHRYIELF 149
+DR NM RY+E+F
Sbjct: 115 RDRQNMGRRYVEVF 128
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 68 RWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDF 124
R+ ++ + +RGLPF + + +FF +H +G+ +GEA V+F
Sbjct: 143 RFSDKDQMEHTEILKLRGLPFSVKKSQILEFFGDFELGDDKVHIACRPDGKATGEAYVEF 202
Query: 125 ATHEDAMQAMSKDRTNMQHRYIELF 149
A+ E+A +AM KD+ + RY+ELF
Sbjct: 203 ASAEEAKKAMGKDKMTIGSRYVELF 227
>gi|148667170|gb|EDK99586.1| mCG133010, isoform CRA_c [Mus musculus]
Length = 187
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
+ V +RGLP+ + DV +F V VH I+ GR SGEA V+ + +D
Sbjct: 11 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESEDDVKL 69
Query: 133 AMSKDRTNMQHRYIELF 149
A+ KDR +M HRYIE+F
Sbjct: 70 ALKKDRESMGHRYIEVF 86
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFF--RPVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
>gi|441647515|ref|XP_003268407.2| PREDICTED: epithelial splicing regulatory protein 1 [Nomascus
leucogenys]
Length = 821
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 483 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 542
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 543 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 574
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 606 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 664
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 665 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 699
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 388 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 447
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 448 HKHHMGTRYIEVY 460
>gi|395510177|ref|XP_003759357.1| PREDICTED: epithelial splicing regulatory protein 2, partial
[Sarcophilus harrisii]
Length = 470
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
+ MRGLPF A DV F P PV + + Y +GRP+G+A FA E A A
Sbjct: 76 IIRMRGLPFTATPADVLAFLGPECPVTGGHEGLLFVRYPDGRPTGDAFALFACEELAQSA 135
Query: 134 MSKDRTNMQHRYIELFLNSSS 154
+ K + + RYIELF ++++
Sbjct: 136 LRKHKGILGKRYIELFRSTAA 156
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVV------PVHVDIHYENGRPSGEADVDFATHEDAM 131
R V +RGLP+ A+ D+ F V VH+ ++ + GRPSG+A + + + A+
Sbjct: 194 RDCVRLRGLPYTASIDDILGFLGEVAGDIRPHGVHMVLN-QQGRPSGDAFIQMKSADRAL 252
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
A + + M+ RY+E+F S V G++ G S
Sbjct: 253 VAAQRCHKKMMKERYVEVFPCSGEEMSLVLMGGTLSRSGMS 293
Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 81 VHMRGLPFRANERDVADFFR----PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V M+GLP+ A +D+ FF+ P V V +H +GRP G+A V F + + A +A+++
Sbjct: 397 VRMQGLPYTAGVKDILSFFQGYQLPADSVLV-LHSFSGRPRGDALVTFPSLDAARRAVAE 455
Query: 137 D 137
+
Sbjct: 456 E 456
>gi|74183823|dbj|BAE24496.1| unnamed protein product [Mus musculus]
Length = 680
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 320 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 379
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 380 EYAQNALRKHKELLGKRYIELFRSTAAEVQQV 411
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 443 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAF 501
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 502 MAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 536
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 285 HKHHMGTRYIEVY 297
>gi|407393563|gb|EKF26660.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi marinkellei]
Length = 454
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPV-VP---VHVDIHYENGRPSGEADVDFATHEDA 130
PS H V +RG+P+ A E +A+FF V +P VH+ ++ E RP+GEA V+ D
Sbjct: 341 APSPHVVRIRGVPYAATEESIAEFFAGVKIPPQGVHM-VYNEQNRPTGEAFVELENDSDL 399
Query: 131 MQAMSKDRTNMQHRYIELFLNSSSPRGGVG 160
+ A+ ++ M +RYIE+F +S + +G
Sbjct: 400 VAALERNGGAMGNRYIEVFQSSVAAMQRLG 429
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPV-HVDIHYE-NGRPSGEADVDFATHE 128
+ G H + +RGLPF + E D+ +F R V V VDI + GR +G+A + AT E
Sbjct: 145 QQEQGCKTHVLRLRGLPFTSTEEDLREFVRCVPGVTRVDICRDLEGRNTGDAFIQLATEE 204
Query: 129 DAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
D +A M RYIE+ ++ R + + S+
Sbjct: 205 DVEEAKQLHNKTMGSRYIEVLPSTMYDRDAIMRAASL 241
>gi|229462862|sp|Q3US41.2|ESRP1_MOUSE RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
Length = 680
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 320 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 379
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 380 EYAQNALRKHKELLGKRYIELFRSTAAEVQQV 411
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 443 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAF 501
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 502 MAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 536
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 285 HKHHMGTRYIEVY 297
>gi|348500206|ref|XP_003437664.1| PREDICTED: epithelial splicing regulatory protein 2-like
[Oreochromis niloticus]
Length = 741
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ MRGLPF A ++V F P PV + + Y +GRP+G+A V F+ E A A+
Sbjct: 327 IRMRGLPFTATPQEVLAFLGPESPVTDGTEGLLFVKYPDGRPTGDAFVLFSCEEYAQNAL 386
Query: 135 SKDRTNMQHRYIELFLNSSS 154
K + + RYIELF ++++
Sbjct: 387 KKHKQILGKRYIELFRSTAA 406
Score = 40.8 bits (94), Expect = 0.40, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRP----VVP--VHVDIHYENGRPSGEADVDFAT 126
++ +R V +RGLP+ A D+ +F + P VH+ ++ + GRPSG+A + +
Sbjct: 443 AASSTRDCVRLRGLPYTAGIEDILEFMGEHTVDIKPHGVHMVLN-QQGRPSGDAFIQMKS 501
Query: 127 HEDA-MQAMSKDRTNMQHRYIELFLNSS 153
+ A M A + M+ RY+E+F S+
Sbjct: 502 PDKAFMVAQKCHKKTMKDRYVEVFQCST 529
Score = 40.8 bits (94), Expect = 0.48, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S + RGLP++++++D+A FF+ + + GR +GEA V F E A
Sbjct: 222 SETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDLA 281
Query: 134 MSKDRTNMQHRYIELF 149
+ + + +M RYIE++
Sbjct: 282 LERHKHHMGSRYIEVY 297
>gi|165972311|ref|NP_918944.2| epithelial splicing regulatory protein 1 [Mus musculus]
Length = 681
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKELLGKRYIELFRSTAAEVQQV 412
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|148673702|gb|EDL05649.1| RNA binding motif protein 35A, isoform CRA_a [Mus musculus]
Length = 483
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 196 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 255
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 256 EYAQNALRKHKELLGKRYIELFRSTAAEVQQV 287
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 319 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAF 377
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 378 MAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 412
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 101 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 160
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 161 HKHHMGTRYIEVY 173
>gi|302839324|ref|XP_002951219.1| hypothetical protein VOLCADRAFT_117772 [Volvox carteri f.
nagariensis]
gi|300263548|gb|EFJ47748.1| hypothetical protein VOLCADRAFT_117772 [Volvox carteri f.
nagariensis]
Length = 245
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMS 135
S + ++GLP+ A E D+ FF P V YE +GRPSG A +F + E+A++A+S
Sbjct: 40 SSAILKLKGLPYSATENDIRQFFAPYELKGVSFVYEPDGRPSGLAFAEFVSKEEALKALS 99
Query: 136 KDRTNMQHRYIELF 149
K+ + RY+ L
Sbjct: 100 KNGEYIGQRYVRLL 113
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 80 TVHMRGLPFRANERDVADFFRPV--VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAM-S 135
T+ +RGLP+ ++ ++ FF+ +P + I + GRPSGEA + F++ ++A++A+
Sbjct: 170 TIKIRGLPYGSSPTEILAFFQTYHYLPDTLQIGLDQLGRPSGEAWLSFSSPQEALRAVRD 229
Query: 136 KDRTNMQHRYIEL 148
+R + RY+EL
Sbjct: 230 LNRHYLGTRYLEL 242
>gi|37747755|gb|AAH59280.1| Rbm35a protein, partial [Mus musculus]
Length = 490
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 203 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 262
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 263 EYAQNALRKHKELLGKRYIELFRSTAAEVQQV 294
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 326 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAF 384
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 385 MAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 419
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 108 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 167
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 168 HKHHMGTRYIEVY 180
>gi|71649626|ref|XP_813529.1| heterogeneous nuclear ribonucleoprotein H/F [Trypanosoma cruzi
strain CL Brener]
gi|70878421|gb|EAN91678.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi]
Length = 450
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPV-VP---VHVDIHYENGRPSGEADVDFATHEDA 130
PS H V +RG+P+ A E +A+FF V +P VH+ ++ E RP+GEA V+ D
Sbjct: 337 APSPHVVRIRGVPYAATEESIAEFFAGVKIPPQGVHM-VYNEQNRPTGEAFVELENDSDL 395
Query: 131 MQAMSKDRTNMQHRYIELFLNSSSPRGGVGG 161
+ A+ ++ M +RYIE+F +S + +G
Sbjct: 396 VAALERNGGAMGNRYIEVFQSSVAAMQRLGS 426
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPV-HVDIHYE-NGRPSGEADVDFATHE 128
+ G H + +RGLPF + E D+ +F R V V VDI + GR +G+A + AT E
Sbjct: 141 QQEQGCKTHVLRLRGLPFTSTEEDLREFVRSVPGVTRVDICRDMEGRNTGDAFIQLATEE 200
Query: 129 DAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
D +A M RYIE+ ++ R + + S+
Sbjct: 201 DVEEAKQLHNKTMGSRYIEVLPSTMYDRDAIMRAASL 237
>gi|71425877|ref|XP_813187.1| heterogeneous nuclear ribonucleoprotein H/F [Trypanosoma cruzi
strain CL Brener]
gi|70878047|gb|EAN91336.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi]
Length = 448
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPV-VP---VHVDIHYENGRPSGEADVDFATHEDA 130
PS H V +RG+P+ A E +A+FF V +P VH+ ++ E RP+GEA V+ D
Sbjct: 335 APSPHVVRIRGVPYAATEESIAEFFAGVKIPPQGVHM-VYNEQNRPTGEAFVELENDSDL 393
Query: 131 MQAMSKDRTNMQHRYIELFLNSSSPRGGVGG 161
+ A+ ++ M +RYIE+F +S + +G
Sbjct: 394 VAALERNGGAMGNRYIEVFQSSVAAMQRLGS 424
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPV-HVDIHYE-NGRPSGEADVDFATHE 128
+ G H + +RGLPF + E D+ +F V V VDI + GR +G+A + AT E
Sbjct: 139 QQEQGCKTHVLRLRGLPFTSTEEDLREFVSSVPGVTRVDICRDMEGRNTGDAFIQLATEE 198
Query: 129 DAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
D +A M RYIE+ ++ R + + S+
Sbjct: 199 DVEEAKQLHNKTMGSRYIEVLPSTMYDRDAIMRAASL 235
>gi|296226947|ref|XP_002807679.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 1 [Callithrix jacchus]
Length = 676
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|407866924|gb|EKG08457.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi]
Length = 450
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPV-VP---VHVDIHYENGRPSGEADVDFATHEDA 130
PS H V +RG+P+ A E +A+FF V +P VH+ ++ E RP+GEA V+ D
Sbjct: 337 APSPHVVRIRGVPYAATEESIAEFFAGVKIPPQGVHM-VYNEQNRPTGEAFVELENDSDL 395
Query: 131 MQAMSKDRTNMQHRYIELFLNSSSPRGGVGG 161
+ A+ ++ M +RYIE+F +S + +G
Sbjct: 396 VAALERNGGAMGNRYIEVFQSSVAAMQRLGS 426
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPV-HVDIHYE-NGRPSGEADVDFATHE 128
+ G H + +RGLPF + E D+ +F R V V VDI + GR +G+A + AT E
Sbjct: 141 QQEQGCKTHVLRLRGLPFTSTEEDLREFVRSVPGVTRVDICRDMEGRNTGDAFIQLATEE 200
Query: 129 DAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
D +A M RYIE+ ++ R + + S+
Sbjct: 201 DVEEAKQLHNKTMGSRYIEVLPSTMYDRDAIMRAASL 237
>gi|189230098|ref|NP_001121036.2| epithelial splicing regulatory protein 1 [Rattus norvegicus]
gi|187469151|gb|AAI66735.1| RGD1560481 protein [Rattus norvegicus]
Length = 659
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R V +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCVRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|410912184|ref|XP_003969570.1| PREDICTED: epithelial splicing regulatory protein 2-like [Takifugu
rubripes]
Length = 740
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ MRGLPF A ++V F P PV + + Y +GRP+G+A V F+ E A A+
Sbjct: 327 IRMRGLPFTATPQEVLSFIGPESPVTDGAEGLLFVKYPDGRPTGDAFVLFSCEEYAQNAL 386
Query: 135 SKDRTNMQHRYIELFLNSSS 154
K + + RYIELF ++++
Sbjct: 387 KKHKQILGKRYIELFRSTAA 406
Score = 40.8 bits (94), Expect = 0.47, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
+ RGLP++++++D+A FF+ + + GR +GEA V F E A+ +
Sbjct: 226 IRARGLPWQSSDQDIARFFKGLTIAKGGVALCLNAQGRRNGEALVRFINPEHRDLALERH 285
Query: 138 RTNMQHRYIELF 149
+ +M +RYIE++
Sbjct: 286 KHHMGNRYIEVY 297
Score = 39.7 bits (91), Expect = 0.95, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRP----VVP--VHVDIHYENGRPSGEADVDFAT 126
++ +R V +RGLP+ A D+ +F + P VH+ ++ + GRPSG+A + +
Sbjct: 443 TASTTRDCVRLRGLPYTAGIEDILEFMGEHTVDIKPHGVHMVLN-QQGRPSGDAFIQLKS 501
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSS 153
+ A K + M+ RY+E+F S+
Sbjct: 502 PDKAFLVAQKCHKKTMKDRYVEVFQCST 529
>gi|390468249|ref|XP_002753088.2| PREDICTED: probable RNA-binding protein 19 [Callithrix jacchus]
Length = 1066
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G VDF+ E+
Sbjct: 392 NQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEE 451
Query: 130 AMQAMSKDRTNMQHRYIELF 149
+A+ +R M RYIE+F
Sbjct: 452 VKKALKCNREYMGGRYIEVF 471
>gi|403295784|ref|XP_003938806.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Saimiri boliviensis boliviensis]
Length = 676
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|355698103|gb|EHH28651.1| RNA-binding protein 35A [Macaca mulatta]
gi|355779831|gb|EHH64307.1| RNA-binding protein 35A [Macaca fascicularis]
Length = 681
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|395818385|ref|XP_003782611.1| PREDICTED: epithelial splicing regulatory protein 1 [Otolemur
garnettii]
Length = 665
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 309 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 368
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 369 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 400
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 432 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 490
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 491 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 525
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 214 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 273
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 274 HKHHMGTRYIEVY 286
>gi|297683323|ref|XP_002819332.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Pongo abelii]
Length = 659
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|56790297|ref|NP_060167.2| epithelial splicing regulatory protein 1 isoform 1 [Homo sapiens]
gi|124020999|sp|Q6NXG1.2|ESRP1_HUMAN RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|119612127|gb|EAW91721.1| RNA binding motif protein 35A, isoform CRA_b [Homo sapiens]
gi|127799385|gb|AAH67098.2| Epithelial splicing regulatory protein 1 [Homo sapiens]
Length = 681
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|402878741|ref|XP_003903031.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Papio anubis]
Length = 659
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|127799644|gb|AAH99916.2| Epithelial splicing regulatory protein 1 [Homo sapiens]
Length = 677
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|402878739|ref|XP_003903030.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Papio anubis]
Length = 677
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|426360259|ref|XP_004047365.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Gorilla gorilla gorilla]
Length = 659
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|297299790|ref|XP_002808532.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 1-like [Macaca mulatta]
Length = 677
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K NM+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHXKNMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|359476979|ref|XP_002280225.2| PREDICTED: epithelial splicing regulatory protein 2-like [Vitis
vinifera]
Length = 264
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
P+ V +RGLPF + D+ FF + V V + ++GR SGEA V FA A A+
Sbjct: 55 PTFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQ 114
Query: 136 KDRTNMQHRYIELF 149
+DR NM RY+E+F
Sbjct: 115 RDRQNMGRRYVEVF 128
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 44 FRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVV 103
+ G ++ND P P R+ ++ + +RGLPF + + +FF
Sbjct: 145 YEGIYDNDFHGSPP-----PSRSKRFSDKDQMEHTEILKLRGLPFSVKKSQILEFFGDFE 199
Query: 104 PVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+H +G+ +GEA V+FA+ E+A +AM KD+ + RY+ELF
Sbjct: 200 LGDDKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMTIGSRYVELF 248
>gi|344273261|ref|XP_003408442.1| PREDICTED: epithelial splicing regulatory protein 1 [Loxodonta
africana]
Length = 677
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|170763529|ref|NP_001116298.1| epithelial splicing regulatory protein 1 isoform 3 [Homo sapiens]
gi|114620965|ref|XP_001143826.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1 [Pan
troglodytes]
Length = 659
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|348588464|ref|XP_003479986.1| PREDICTED: epithelial splicing regulatory protein 1-like isoform 2
[Cavia porcellus]
Length = 659
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|170763525|ref|NP_001030087.2| epithelial splicing regulatory protein 1 isoform 2 [Homo sapiens]
gi|332830836|ref|XP_003311899.1| PREDICTED: epithelial splicing regulatory protein 1 [Pan
troglodytes]
Length = 677
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|229485495|sp|B2RYD2.2|ESRP1_RAT RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
Length = 677
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R V +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCVRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|260819360|ref|XP_002605005.1| hypothetical protein BRAFLDRAFT_285603 [Branchiostoma floridae]
gi|229290334|gb|EEN61015.1| hypothetical protein BRAFLDRAFT_285603 [Branchiostoma floridae]
Length = 645
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
V MRGLP+ A D+ +FF PV + + Y NGR +G+A V F T A A
Sbjct: 317 IVRMRGLPYTATAADILNFFGQSCPVAGGEKGILFVRYANGRSTGDAFVLFETEAYAQLA 376
Query: 134 MSKDRTNMQHRYIELFLNSSS 154
++K + ++ RYIELF ++++
Sbjct: 377 LAKHKESLGKRYIELFRSTAA 397
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V MRGLP++A DV F +H+ ++ +G+PSG+ + +
Sbjct: 428 TCGSIRDCVRMRGLPYQATHDDVLAFLGEYAVYVRDHGIHMVLN-SSGKPSGDCFIQMYS 486
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNS 152
E A QA K R M RYIE+F S
Sbjct: 487 PEAARQAAEKCHRQYMGDRYIEVFQCS 513
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 9/76 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
+ +RGLP++++++D+A FFR + V V ++ GR +GEA V FA+ E A
Sbjct: 215 ILRVRGLPWQSSDQDIARFFRGLNITKGGVAVCLN---PQGRRNGEALVRFASKEHRDLA 271
Query: 134 MSKDRTNMQHRYIELF 149
+ + + ++ RYIE++
Sbjct: 272 LLRHKHHIGQRYIEVY 287
>gi|426360257|ref|XP_004047364.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Gorilla gorilla gorilla]
Length = 677
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|395739900|ref|XP_003777336.1| PREDICTED: epithelial splicing regulatory protein 1 [Pongo abelii]
Length = 677
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|348588462|ref|XP_003479985.1| PREDICTED: epithelial splicing regulatory protein 1-like isoform 1
[Cavia porcellus]
Length = 681
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|390332535|ref|XP_001184447.2| PREDICTED: probable RNA-binding protein 19-like [Strongylocentrotus
purpuratus]
Length = 513
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 11/76 (14%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
T+ MRG+PF E DV FF P+ P++ E G+ +G V+FA+ +D +A
Sbjct: 373 TIKMRGVPFNVKEEDVVKFFAPLSMKTIRAPLN-----EKGQRTGVIFVEFASEDDITKA 427
Query: 134 MSKDRTNMQHRYIELF 149
M ++R M RY+ELF
Sbjct: 428 MKRNREYMGRRYVELF 443
>gi|432852904|ref|XP_004067443.1| PREDICTED: epithelial splicing regulatory protein 2-like [Oryzias
latipes]
Length = 695
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ + MRGLPF A ++V F P PV + + Y +GRP+G+A V F+
Sbjct: 277 SKENQVIIRMRGLPFTATSQEVLSFLGPESPVTDGAEGLLFVKYPDGRPTGDAFVLFSCE 336
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSS 154
E A+ K + + RYIELF ++++
Sbjct: 337 EYVQNALKKHKQILGKRYIELFRSTAA 363
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 77 SRHTVHMRGLPFRANERDVADFF----RPVVP--VHVDIHYENGRPSGEADVDFATHEDA 130
+R V +RGLP+ A D+ +F + P VH+ ++ + GRPSG+A + + + A
Sbjct: 402 TRDCVRLRGLPYTAGIEDILEFMGEHTVDIKPHGVHMVLN-QQGRPSGDAFIQMKSADRA 460
Query: 131 -MQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
M A + M+ RY+E+F S+ V G++ G S
Sbjct: 461 FMVAQKCHKKTMKDRYVEVFQCSTEEMSIVLMGGTLNRSGLS 502
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDA 130
S + RGLP++++++D+A FF+ + V + ++ GR +GEA V F E
Sbjct: 179 SETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLN---AQGRRNGEALVRFIDSEHR 235
Query: 131 MQAMSKDRTNMQHRYIELF 149
A+ + + +M RYIE++
Sbjct: 236 DLALERHKHHMGCRYIEVY 254
>gi|148673703|gb|EDL05650.1| RNA binding motif protein 35A, isoform CRA_b [Mus musculus]
Length = 604
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKELLGKRYIELFRSTAAEVQQV 412
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
>gi|417412339|gb|JAA52559.1| Putative rna-binding protein fusilli, partial [Desmodus rotundus]
Length = 697
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 348 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 407
Query: 135 SKDRTNMQHRYIELFLNSSS 154
K + + RYIELF ++++
Sbjct: 408 RKHKDLLGKRYIELFRSTAA 427
Score = 43.1 bits (100), Expect = 0.088, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 464 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 522
Query: 132 QAMSK-DRTNMQHRYIELFLNSS 153
A K + M+ RY+E+F S+
Sbjct: 523 MAAQKCHKKTMKDRYVEVFQCSA 545
Score = 40.0 bits (92), Expect = 0.76, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 247 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 306
Query: 138 RTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 307 KHHMGTRYIEVY 318
>gi|21618692|gb|AAH31468.1| RNA binding motif protein 35A [Mus musculus]
Length = 444
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 161 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 220
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 221 EYAQNALRKHKELLGKRYIELFRSTAAEVQQV 252
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 284 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAF 342
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 343 MAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 377
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 66 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 125
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 126 HKHHMGTRYIEVY 138
>gi|34192605|gb|AAH19932.1| ESRP1 protein [Homo sapiens]
Length = 656
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 369 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 428
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 429 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 460
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 492 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 550
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 551 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 585
Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 274 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 333
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 334 HKHHMGTRYIEVY 346
>gi|71998567|ref|NP_495960.2| Protein SYM-2 [Caenorhabditis elegans]
gi|74966269|sp|Q22708.3|SYM2_CAEEL RecName: Full=RNA-binding protein sym-2; AltName: Full=Synthetic
lethal with mec-8 protein 2
gi|29165341|gb|AAO65265.1| putative RNA binding protein SYM-2 [Caenorhabditis elegans]
gi|33300449|emb|CAA93887.2| Protein SYM-2 [Caenorhabditis elegans]
Length = 618
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH--VDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V MRGLP+ + + FF P+ + I +GRP+G+A V F T EDA Q + K
Sbjct: 282 IVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKH 341
Query: 138 RTNMQHRYIELFLNSSSPRGGV 159
R + RYIELF ++++ V
Sbjct: 342 RQVIGQRYIELFKSTAAEVQQV 363
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 84 RGLPFRANERDVADFF--RPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
RGLP++A++ VA FF +VP + + + E GR +GE V F++ E A+ + R
Sbjct: 186 RGLPWQASDHHVAQFFAGLDIVPGGIALCLSSE-GRRNGEVLVQFSSQESRDLALKRHRN 244
Query: 140 NMQHRYIELF 149
+ RYIE++
Sbjct: 245 FLLSRYIEVY 254
>gi|417412016|gb|JAA52424.1| Putative rna-binding protein fusilli, partial [Desmodus rotundus]
Length = 627
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 341 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 400
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 401 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 432
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 464 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 522
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 523 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 557
Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 246 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 305
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 306 HKHHMGTRYIEVY 318
>gi|26334977|dbj|BAC31189.1| unnamed protein product [Mus musculus]
Length = 500
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 307 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 366
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 367 EYAQNALRKHKELLGKRYIELFRSTAAEVQQV 398
Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 212 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 271
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 272 HKHHMGTRYIEVY 284
>gi|324504848|gb|ADY42090.1| Heterogeneous nuclear ribonucleoprotein H2 [Ascaris suum]
Length = 282
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V RGLP+ E ++ FF+P V I + RPSGEA V F +ED A+++
Sbjct: 56 VVKCRGLPWSCTEEEIRIFFQPADRSIVKITLTKNRDARPSGEAFVAFNNNEDYEYALTR 115
Query: 137 DRTNMQHRYIELFLNSSS 154
D+ +M RYIE+F S+S
Sbjct: 116 DKQHMGKRYIEVFPASAS 133
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 74 SGPSRHT--VHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFAT 126
S P R T V +RGLP+ ++ FF P +P+ + + +G+ +G+A V F
Sbjct: 151 SLPGRDTSIVRLRGLPYGCTNDEITRFFHP-IPIAANGIVLPYDHRSGKATGDAFVAFYE 209
Query: 127 HEDAMQAMSKDRTNMQHRYIELFLNS 152
+ A +A+ ++R N+QHRYIE+F +S
Sbjct: 210 PDSAARALERNRNNIQHRYIEVFPSS 235
>gi|417405465|gb|JAA49443.1| Putative rna-binding protein rrm superfamily [Desmodus rotundus]
Length = 968
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMSKD 137
HTV +RG PF E++V +F P+ P + I +G +G VDF++ E+ +A+ +
Sbjct: 296 HTVKLRGAPFNVTEKNVLEFLAPLKPAAIRIVRNAHGNKTGYVFVDFSSEEEVKKALKCN 355
Query: 138 RTNMQHRYIELFLNSSSP 155
R M RYIE+F + P
Sbjct: 356 REYMGGRYIEVFREQNVP 373
>gi|170763527|ref|NP_001116297.1| epithelial splicing regulatory protein 1 isoform 4 [Homo sapiens]
Length = 608
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 36.6 bits (83), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|149061069|gb|EDM11679.1| similar to hypothetical protein FLJ20171 (predicted) [Rattus
norvegicus]
Length = 604
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R V +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCVRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|147834707|emb|CAN70556.1| hypothetical protein VITISV_016468 [Vitis vinifera]
Length = 257
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
P+ V +RGLPF + D+ FF + V V + ++GR SGEA V FA A A+
Sbjct: 48 PTFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQ 107
Query: 136 KDRTNMQHRYIELF 149
+DR NM RY+E+F
Sbjct: 108 RDRQNMGRRYVEVF 121
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 44 FRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVV 103
+ G ++ND P P R+ ++ + +RGLPF + + +FF
Sbjct: 138 YEGIYDNDFHGSPP-----PSRSKRFSDKDQMEHTEILKLRGLPFSVKKSQILEFFGDFE 192
Query: 104 PVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+H +G+ +GEA V+FA+ E+A +AM KD+ + RY+ELF
Sbjct: 193 LGDDKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMTIGSRYVELF 241
>gi|52346028|ref|NP_001005057.1| epithelial splicing regulatory protein 1 [Xenopus (Silurana)
tropicalis]
gi|82182765|sp|Q6DEZ7.1|ESRP1_XENTR RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|49899931|gb|AAH76946.1| MGC89324 protein [Xenopus (Silurana) tropicalis]
Length = 687
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF PV + + Y + RP+G+A V FA
Sbjct: 322 SKENQVIVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACE 381
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 382 EYAQNALKKHKELLGKRYIELFRSTAAEVQQV 413
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ +F VH+ ++++ GRPSG++ + + + A
Sbjct: 445 RDCIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQ-GRPSGDSFIQMKSADRAY 503
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 504 LAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 538
Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+ RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 137 DRTNMQHRYIELF 149
+ +M +RYIE++
Sbjct: 287 HKHHMGNRYIEVY 299
>gi|355686615|gb|AER98118.1| epithelial splicing regulatory protein 1 [Mustela putorius furo]
Length = 561
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 229 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 288
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 289 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 320
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 352 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 410
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 411 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 445
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 134 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 193
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 194 HKHHMGTRYIEVY 206
>gi|403295786|ref|XP_003938807.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Saimiri boliviensis boliviensis]
Length = 603
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 36.2 bits (82), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|358420736|ref|XP_001789374.2| PREDICTED: epithelial splicing regulatory protein 1 [Bos taurus]
gi|296490145|tpg|DAA32258.1| TPA: fusilli-like [Bos taurus]
Length = 767
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSS 154
E A A+ K + + RYIELF ++++
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAA 407
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYVATTEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
>gi|296803341|gb|ADH51734.1| ESRP1/RAF1 fusion protein [Homo sapiens]
Length = 1061
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 135 SKDRTNMQHRYIELFLNSSS 154
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSS 153
A K + NM+ RY+E+F S+
Sbjct: 503 MAAQKCHKKNMKDRYVEVFQCSA 525
Score = 39.7 bits (91), Expect = 0.90, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
Query: 138 RTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 287 KHHMGTRYIEVY 298
>gi|297683325|ref|XP_002819333.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Pongo abelii]
Length = 604
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 537
>gi|440906208|gb|ELR56498.1| Putative RNA-binding protein 19 [Bos grunniens mutus]
Length = 947
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD-IHYENGRPSGEADVDFATHEDAMQAMSKD 137
HTV +RG PF E++V +F P+ P + + +G +G VDF++ E+ +A+ +
Sbjct: 297 HTVKLRGAPFNVTEKNVMEFLAPLKPAAIRVVRNAHGNKTGYVFVDFSSEEEVRKALKCN 356
Query: 138 RTNMQHRYIELFLNSSSP 155
R M RYIE+F + P
Sbjct: 357 REYMGGRYIEVFRERNVP 374
>gi|344250517|gb|EGW06621.1| Epithelial splicing regulatory protein 1 [Cricetulus griseus]
Length = 677
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 169 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 228
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSS 154
E A A+ K + + RYIELF ++++
Sbjct: 229 EYAQNALRKHKDLLGKRYIELFRSTAA 255
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V RGLP++++++D+A FF+ + + ++ GR +GEA V F + E A
Sbjct: 74 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLN---AQGRRNGEALVRFVSEEHRDLA 130
Query: 134 MSKDRTNMQHRYIELF 149
+ + + +M RYIE++
Sbjct: 131 LQRHKHHMGTRYIEVY 146
>gi|426360261|ref|XP_004047366.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Gorilla gorilla gorilla]
Length = 604
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 537
>gi|402878743|ref|XP_003903032.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Papio anubis]
Length = 604
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 537
>gi|431917858|gb|ELK17089.1| Epithelial splicing regulatory protein 1 [Pteropus alecto]
Length = 680
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 288 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 347
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGS-IGGFG 169
E A A+ K + + RYIELF ++++ + +GGF
Sbjct: 348 EYAQNALRKHKDLLGKRYIELFRSTAADAESILLVFEHVGGFA 390
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 447 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 505
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 506 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 540
Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 193 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 252
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 253 HKHHMGTRYIEVY 265
>gi|268529124|ref|XP_002629688.1| C. briggsae CBR-SYM-2 protein [Caenorhabditis briggsae]
Length = 613
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH--VDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V MRGLP+ + + FF P+ + I +GRP+G A V F T EDA Q + K
Sbjct: 273 IVRMRGLPYDCTDTQIRAFFEPLKLTEKILFITRTDGRPTGCAFVQFETEEDAQQGLLKH 332
Query: 138 RTNMQHRYIELFLNSSSPRGGV 159
R + RYIELF ++++ V
Sbjct: 333 RQVIGQRYIELFKSTAAEVQQV 354
>gi|170763533|ref|NP_001116299.1| epithelial splicing regulatory protein 1 isoform 5 [Homo sapiens]
gi|114620967|ref|XP_001143905.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2 [Pan
troglodytes]
Length = 604
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 537
>gi|417412369|gb|JAA52574.1| Putative rna-binding protein fusilli, partial [Desmodus rotundus]
Length = 701
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 348 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 407
Query: 135 SKDRTNMQHRYIELFLNSSS 154
K + + RYIELF ++++
Sbjct: 408 RKHKDLLGKRYIELFRSTAA 427
Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 464 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 522
Query: 132 QAMSK-DRTNMQHRYIELFLNSS 153
A K + M+ RY+E+F S+
Sbjct: 523 MAAQKCHKKTMKDRYVEVFQCSA 545
Score = 39.7 bits (91), Expect = 0.97, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 247 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 306
Query: 138 RTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 307 KHHMGTRYIEVY 318
>gi|334326246|ref|XP_001379501.2| PREDICTED: epithelial splicing regulatory protein 1 [Monodelphis
domestica]
Length = 677
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVLAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADF---FRPVVP---VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ +F F + VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILEFLGEFSTAIQTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M +RYIE++
Sbjct: 286 HKHHMGNRYIEVY 298
>gi|148223399|ref|NP_001079524.1| epithelial splicing regulatory protein 1 [Xenopus laevis]
gi|82241595|sp|Q7ZY29.1|ESRP1_XENLA RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|27694832|gb|AAH44002.1| MGC53361 protein [Xenopus laevis]
Length = 688
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF PV + + Y + RP+G+A V FA
Sbjct: 322 SKENQVIVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACE 381
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 382 EYAQNALKKHKELLGKRYIELFRSTAAEVQQV 413
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ +F VH+ ++++ GRPSG++ + + + A
Sbjct: 445 RDCIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQ-GRPSGDSFIQMKSADRAY 503
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 504 LAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 538
Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+ RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 137 DRTNMQHRYIELF 149
+ +M +RYIE++
Sbjct: 287 HKHHMGNRYIEVY 299
>gi|410987481|ref|XP_004000029.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Felis catus]
Length = 659
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|335286312|ref|XP_003125612.2| PREDICTED: epithelial splicing regulatory protein 1-like isoform 1
[Sus scrofa]
Length = 681
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|195037855|ref|XP_001990376.1| GH18272 [Drosophila grimshawi]
gi|193894572|gb|EDV93438.1| GH18272 [Drosophila grimshawi]
Length = 622
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPVVPV------HVDIHYENGRPSGEADVDFATHE 128
G S + +RGLP+ A +++ DF V + H+ +G+ +GEA V+ A+ E
Sbjct: 57 GESPKFIRLRGLPWSATHKEILDFLVNVEVINGSQGIHLVTSRVDGKNTGEAYVEVASQE 116
Query: 129 DAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGF 179
D +A ++ +M HRYIE+F +++P+ GG G + +L G
Sbjct: 117 DVEEARKLNKVSMGHRYIEVF--TATPKEAKEAMRKTGGHGHAFVVKLRGL 165
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD------IHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ E+ + +FF + + D + GR +GEA V F + +D QA
Sbjct: 159 VVKLRGLPYAVTEQQIEEFFTGL-EIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQA 217
Query: 134 MSKDRTNMQHRYIELFLNSSSP 155
+ ++R + HRYIE+F +S +
Sbjct: 218 LGRNREKIGHRYIEIFRSSIAE 239
>gi|7020094|dbj|BAA90992.1| unnamed protein product [Homo sapiens]
Length = 358
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 161 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 220
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 221 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 252
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 66 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 125
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 126 HKHHMGTRYIEVY 138
>gi|85700309|gb|AAI12044.1| ESRP1 protein [Homo sapiens]
Length = 392
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 168 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 227
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 228 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 259
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 291 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 349
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 350 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 384
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 73 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 132
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 133 HKHHMGTRYIEVY 145
>gi|281203425|gb|EFA77625.1| hypothetical protein PPL_12232 [Polysphondylium pallidum PN500]
Length = 1794
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
S TV +RGLP+ A E +ADFF + ++ I Y+ GRPSG A V ++ D QA+ +
Sbjct: 1717 SEFTVKLRGLPYSATEDSIADFFDGLGVTNIKIIYQRGRPSGLAYVSLSSQYDYDQALKR 1776
Query: 137 DRTNM 141
++ +M
Sbjct: 1777 NKNHM 1781
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPV--VPVHVDI-HYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RG+P+ NE + DFF+PV +P + I +G+ SGEA ++F + A +A
Sbjct: 1153 VLIRGMPWSTNEGQIRDFFKPVPIMPNGITILMNSHGKQSGEAYIEFVDEDAARKANDYH 1212
Query: 138 RTNMQHRYIELF 149
R M+HRYIE+
Sbjct: 1213 RKMMRHRYIEVL 1224
Score = 42.0 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ DV FF +I E NGR +GE V+F T E A A+
Sbjct: 1251 VRLRGLPYNVTPADVISFFSGYAISGNNILIEKDYNGRVTGEGFVEFVTFETASSALK-- 1308
Query: 138 RTNMQH-----RYIELF 149
++QH RYIELF
Sbjct: 1309 --HLQHKAISSRYIELF 1323
>gi|47217849|emb|CAG02342.1| unnamed protein product [Tetraodon nigroviridis]
Length = 776
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ MRGLPF A ++V F P PV + + Y +GRP+G+A V F+ E A A+
Sbjct: 358 IRMRGLPFTATPQEVLSFLGPESPVTDGSEGLLFVKYPDGRPTGDAFVLFSCEEYAQNAL 417
Query: 135 SKDRTNMQHRYIELFLNSSS 154
K + + RYIELF ++++
Sbjct: 418 KKHKQILGKRYIELFRSTAA 437
Score = 40.0 bits (92), Expect = 0.77, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
+ RGLP++++++D+A FF+ + + GR +GEA V F E A+ +
Sbjct: 257 IRARGLPWQSSDQDIARFFKGLSIARGGVALCLNAQGRRNGEALVRFINSEHRDLALERH 316
Query: 138 RTNMQHRYIELF 149
+ +M +RYIE++
Sbjct: 317 KHHMGNRYIEVY 328
Score = 39.3 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRP----VVP--VHVDIHYENGRPSGEADVDFAT 126
++ +R V +RGLP+ A D+ +F + P VH+ ++ + GRPSG+A + +
Sbjct: 474 TASTARDCVRLRGLPYTAGIEDILEFMGEHTVDIKPHGVHMVLN-QQGRPSGDAFIQMKS 532
Query: 127 HEDA-MQAMSKDRTNMQHRYIELFLNSS 153
+ A M A + M+ RY+E+F S+
Sbjct: 533 PDKAFMVAQKCHKKTMKDRYVEVFQCST 560
>gi|410987479|ref|XP_004000028.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Felis catus]
Length = 677
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|301782433|ref|XP_002926629.1| PREDICTED: epithelial splicing regulatory protein 1-like
[Ailuropoda melanoleuca]
Length = 677
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|281352677|gb|EFB28261.1| hypothetical protein PANDA_016305 [Ailuropoda melanoleuca]
Length = 656
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|440906249|gb|ELR56534.1| Epithelial splicing regulatory protein 1, partial [Bos grunniens
mutus]
Length = 715
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 358 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 417
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSS 154
E A A+ K + + RYIELF ++++
Sbjct: 418 EYAQNALRKHKDLLGKRYIELFRSTAA 444
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 478 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 536
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 537 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 571
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 263 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 322
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 323 HKHHMGSRYIEVY 335
>gi|426236209|ref|XP_004012064.1| PREDICTED: epithelial splicing regulatory protein 1 [Ovis aries]
Length = 761
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 405 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 464
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 465 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 496
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 528 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 586
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 587 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 621
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 310 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 369
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 370 HKHHMGSRYIEVY 382
>gi|348526958|ref|XP_003450986.1| PREDICTED: epithelial splicing regulatory protein 1 [Oreochromis
niloticus]
Length = 738
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 80 TVHMRGLPFRANERDVADFFRP------VVPVH------VDIHYENGRPSGEADVDFATH 127
V MRGLPF A V FF P PV + + Y +GRP+G+A V FA
Sbjct: 352 IVRMRGLPFTATHEQVLAFFSPEDELKETCPVSGGKDGILFVRYPDGRPTGDAFVLFACE 411
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSS 154
E A A+ K + + RYIELF ++++
Sbjct: 412 EHAQCALRKHKEILGKRYIELFKSTAA 438
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 9/76 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
+ RGLP++++++D+A FFR + V + ++ GR +GEA V F + E A
Sbjct: 251 VIRARGLPWQSSDQDIARFFRGLNIAKGGVALCLN---AQGRRNGEALVRFVSEEHRELA 307
Query: 134 MSKDRTNMQHRYIELF 149
+ + + +M +RYIE++
Sbjct: 308 LQRHKHHMGNRYIEVY 323
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 78 RHTVHMRGLPFRANERDVADFF----RPVVP--VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A+ D+ F + + P VH+ ++ + GRPSG+ + + E A+
Sbjct: 477 RDCLRLRGLPYTASIEDILTFLGEFTQDIRPHGVHMVLN-QQGRPSGDCFIQMTSAERAL 535
Query: 132 QAMSKDRTNMQ-------HRYIELFLNSSSPRGGV 159
QA + ++ RY+E+F S+ G V
Sbjct: 536 QASQRLHKHVMSSQRGANSRYVEVFPCSAEEMGLV 570
>gi|338728566|ref|XP_003365697.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Equus caballus]
Length = 659
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|300795130|ref|NP_001179931.1| epithelial splicing regulatory protein 1 [Bos taurus]
gi|296480439|tpg|DAA22554.1| TPA: epithelial splicing regulatory protein 1 [Bos taurus]
Length = 677
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGSRYIEVY 298
>gi|159469283|ref|XP_001692797.1| splicing factor [Chlamydomonas reinhardtii]
gi|158278050|gb|EDP03816.1| splicing factor [Chlamydomonas reinhardtii]
Length = 647
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
+ RGLP+ + +DV +FF VP+ V + +GRP+GEA V+ T E +A
Sbjct: 119 VIRCRGLPYTSTAQDVLNFFGADVPIVRGIEGVVFTYAPDGRPTGEAFVELQTEEAQREA 178
Query: 134 MSKDRTNMQHRYIELFLNS 152
+ K + ++ RYIELF+++
Sbjct: 179 LKKHKESLGSRYIELFVST 197
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
S P + +RGLPF A E DV FF V I GR +GE V + A A
Sbjct: 21 SVPKSTVLRLRGLPFSAGEDDVRQFFADFEVATVVIGKRAGRSTGEGYVQLDSVAAAADA 80
Query: 134 MSK-DRTNMQHRYIELFLNSSS 154
++K R + HRYIE+F ++ +
Sbjct: 81 IAKLHRQTLGHRYIEVFESTEA 102
>gi|30794154|ref|NP_083038.1| probable RNA-binding protein 19 [Mus musculus]
gi|73621449|sp|Q8R3C6.1|RBM19_MOUSE RecName: Full=Probable RNA-binding protein 19; AltName:
Full=RNA-binding motif protein 19
gi|19343654|gb|AAH25619.1| RNA binding motif protein 19 [Mus musculus]
gi|21707580|gb|AAH34010.1| RNA binding motif protein 19 [Mus musculus]
gi|148687830|gb|EDL19777.1| RNA binding motif protein 19 [Mus musculus]
Length = 952
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 36 RGGPPRGGFRGGFNNDRWNDRPGGFAGP--RPGGRWVNESSGPSRHTVHMRGLPFRANER 93
+GG RG G RP AG +P V++ + +TV +RG PF E+
Sbjct: 259 QGGVSRGAVPGVL-------RPQEAAGKVEKP----VSQKEPTTPYTVKLRGAPFNVTEK 307
Query: 94 DVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+V +F P+ PV + I +G +G VD ++ E+ +A+ +R M RYIE+F
Sbjct: 308 NVIEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREK 367
Query: 153 SSP 155
+P
Sbjct: 368 QAP 370
>gi|159163318|pdb|1WG5|A Chain A, Solution Structure Of The First Rrm Domain In
Heterogeneous Nuclear Ribonucleoprotein H
Length = 104
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V +RGLPF ++ ++ FF +VP + + + ++ GR +GEA V FA+ E A +A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTGEAFVQFASQEIAEKALKK 76
Query: 137 DRTNMQHRYIELFLNS 152
+ + HRYIE+F +S
Sbjct: 77 HKERIGHRYIEIFKSS 92
>gi|226501122|ref|NP_001148833.1| RNA binding protein [Zea mays]
gi|195622468|gb|ACG33064.1| RNA binding protein [Zea mays]
Length = 268
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V +RGLPF N+ D+ FF + V + +NGR +GEA V F T A+ ++R N
Sbjct: 89 VRLRGLPFDCNDIDICKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQN 148
Query: 141 MQHRYIELF 149
M RY+E+F
Sbjct: 149 MGRRYVEVF 157
>gi|410905415|ref|XP_003966187.1| PREDICTED: epithelial splicing regulatory protein 1-like [Takifugu
rubripes]
Length = 741
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 80 TVHMRGLPFRANERDVADFFRP------VVPVH------VDIHYENGRPSGEADVDFATH 127
V MRGLPF A V FF P P+ + + Y +GRP+G+A V FA
Sbjct: 336 IVRMRGLPFTATHEQVLSFFSPGEGLKETCPISGGQDGILFVRYPDGRPTGDAFVLFACE 395
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSS 154
E A A+ K + + RYIELF ++++
Sbjct: 396 EHAQCALRKHKEILGRRYIELFKSTAA 422
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A+ D+ +F VH+ ++ + GRPSG+ + + E A+
Sbjct: 461 RDCLRLRGLPYTASIEDILNFLGEFTQDVRQHGVHMVLN-QQGRPSGDCFIQMTSLERAL 519
Query: 132 QAMSKDRTNMQH-------RYIELFLNSSSPRGGVGGSGSIG 166
QA + + RY+E+F S+ G V GS+
Sbjct: 520 QASQRLHKQVMFSQRGSNSRYVEVFPCSAEEMGLVLMGGSLA 561
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 9/76 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
+ RGLP++++++D+A FFR + V + ++ GR +GEA V F E A
Sbjct: 235 VIRARGLPWQSSDQDIARFFRGLNIAKGGVALCLN---AQGRRNGEALVRFINEEHRDLA 291
Query: 134 MSKDRTNMQHRYIELF 149
+ + + +M +RYIE++
Sbjct: 292 LQRHKHHMGNRYIEVY 307
>gi|194214972|ref|XP_001915056.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Equus caballus]
Length = 677
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|345326895|ref|XP_001507064.2| PREDICTED: epithelial splicing regulatory protein 1, partial
[Ornithorhynchus anatinus]
Length = 605
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V+ FF P+ + + Y +GRP+G+A V FA
Sbjct: 249 SKENQVIVRMRGLPFTATADEVSAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 308
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 309 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 340
Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ +F VH+ ++++ GRPSG+A + + + A
Sbjct: 372 RDCIRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 430
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 431 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 465
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 154 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 213
Query: 137 DRTNMQHRYIELF 149
+ +M +RYIE++
Sbjct: 214 HKHHMGNRYIEVY 226
>gi|341902820|gb|EGT58755.1| CBN-SYM-2 protein [Caenorhabditis brenneri]
Length = 761
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH--VDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V MRGLP+ ++ + FF P+ + I +GRP+G+A V F T EDA + + K
Sbjct: 362 IVRMRGLPYDCSDNQIRAFFEPLKLTEKILFITRTDGRPTGDAFVQFETEEDAQKGLLKH 421
Query: 138 RTNMQHRYIELFLNSSSPRGGV 159
R + RYIELF ++++ V
Sbjct: 422 RHIIGQRYIELFKSTAAEVQQV 443
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 84 RGLPFRANERDVADFF--RPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
RGLP++A+++ VA FF +VP + + + E GR +GE V FA+ E A+ + R
Sbjct: 212 RGLPWQASDQHVAQFFAGLDIVPGGIALCLSSE-GRRNGEVLVQFASQESRDLALKRHRN 270
Query: 140 NMQHRYIELF 149
+ RYIE++
Sbjct: 271 FLLSRYIEVY 280
>gi|335286314|ref|XP_003355068.1| PREDICTED: epithelial splicing regulatory protein 1-like isoform 2
[Sus scrofa]
Length = 608
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>gi|156401541|ref|XP_001639349.1| predicted protein [Nematostella vectensis]
gi|156226477|gb|EDO47286.1| predicted protein [Nematostella vectensis]
Length = 341
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDF 124
N S + + MRGLPF DV FF VPV+ + + NG+ +G+A V F
Sbjct: 103 NFVSTNAEVIIRMRGLPFSTKAADVVRFFGDDVPVYRGEGGILMVRGRNGKATGDAFVLF 162
Query: 125 ATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFG 169
T E A+ K R + RY+ELF +S S V S S+ G
Sbjct: 163 ETEEHGRAALKKHREVLGSRYVELFRSSQSEVQQVLSSLSLFMMG 207
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRP----VVP--VHVDIHYENGRPSGEADVDFATHEDA 130
++ + +RGLPF A +DV DF + V P VH+ ++ GRPSG+A V + + A
Sbjct: 244 AKDCLRLRGLPFSATVQDVLDFLKEHAAYVAPGGVHM-VYNTQGRPSGDAYVQLLSPDFA 302
Query: 131 MQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A ++ + +M RYIE+F S+S V S ++
Sbjct: 303 AAAANELHKHHMGERYIEVFPCSNSDISAVIASSTL 338
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPV-VP---VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
+ RGLP++A+++DVA+FFR + +P + ++ + GR +GEA + F + A+
Sbjct: 12 VLRARGLPWQASDQDVANFFRGLNIPRGGIAFCLNMQ-GRRNGEAFIRFENGDHRDLALR 70
Query: 136 KDRTNMQHRYIELFLNSSS 154
+ + ++ RYIE++ S+
Sbjct: 71 RHKMHLGTRYIEVYKASAQ 89
>gi|26343509|dbj|BAC35411.1| unnamed protein product [Mus musculus]
Length = 521
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 70 VNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHE 128
V++ + +TV +RG PF E++V +F P+ PV + I +G +G VD ++ E
Sbjct: 284 VSQKEPTTPYTVKLRGAPFNVTEKNVIEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEE 343
Query: 129 DAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ +A+ +R M RYIE+F +P
Sbjct: 344 EVKKALKCNRDYMGGRYIEVFREKQAPTA 372
>gi|428185861|gb|EKX54712.1| hypothetical protein GUITHDRAFT_57099, partial [Guillardia theta
CCMP2712]
Length = 203
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 80 TVHMRGLPFRANERDVADFFRP--VVPVHVD-IHYENGRPSGEADVDFATHEDAMQAMSK 136
V +RGLP+ A E DV DFF V P V+ I G SG+A V+ + E+ M+A++
Sbjct: 124 VVKVRGLPYSAKEADVFDFFCSSNVRPSGVNLIQNARGESSGDAYVELGSEEEVMRALAL 183
Query: 137 DRTNMQHRYIELFLNS 152
R+N HRY+E+F S
Sbjct: 184 HRSNFGHRYLEIFRTS 199
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V MRGLPF E D+ +FF ++ I + +GRP+GEA V F ++ +A+S
Sbjct: 1 IVRMRGLPFSVREEDIREFFSGLLVRPHGIFFTSSRDGRPTGEAFVIFERDDEGEKALSL 60
Query: 137 DRTNMQHRYIELF 149
DR +M RY+E+F
Sbjct: 61 DRKHMGTRYVEVF 73
>gi|157883792|pdb|2HGM|A Chain A, Nmr Structure Of The Second Qrrm Domain Of Human Hnrnp F
gi|297787487|pdb|2KG0|A Chain A, Structure Of The Second Qrrm Domain Of Hnrnp F In Complex
With A Agggau G-Tract Rna
Length = 126
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 60 FAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRP 116
G + GR N + + V +RGLPF + ++ FF +VP + + + G+
Sbjct: 24 MTGGQQMGRGSNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKI 83
Query: 117 SGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 84 TGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 119
>gi|432909348|ref|XP_004078165.1| PREDICTED: epithelial splicing regulatory protein 1-like [Oryzias
latipes]
Length = 656
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 12/87 (13%)
Query: 80 TVHMRGLPFRANERDVADFFRP------VVPVH------VDIHYENGRPSGEADVDFATH 127
V MRGLPF A V FF P PV + + Y +GRP+G+A V F+
Sbjct: 346 IVRMRGLPFTATYEQVLAFFSPKDGLNETCPVSGGKDGILFVRYPDGRPTGDAFVLFSCE 405
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSS 154
E A+ A+ K + + RYIELF ++++
Sbjct: 406 EHALCALRKHKEILGKRYIELFKSTAA 432
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+ RGLP++++++D+A FFR + GR +GEA V F + E A+ +
Sbjct: 245 VIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 304
Query: 137 DRTNMQHRYIELF 149
+ +M +RYIE++
Sbjct: 305 HKHHMGNRYIEVY 317
>gi|395512150|ref|XP_003760307.1| PREDICTED: epithelial splicing regulatory protein 1 [Sarcophilus
harrisii]
Length = 550
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 320 SKENQVIVRMRGLPFTATAEEVLAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 379
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSS 154
E A A+ K + + RYIELF ++++
Sbjct: 380 EYAQNALRKHKDLLGKRYIELFRSTAA 406
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 225 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 137 DRTNMQHRYIELF 149
+ +M +RYIE++
Sbjct: 285 HKHHMGNRYIEVY 297
>gi|328790346|ref|XP_003251410.1| PREDICTED: hypothetical protein LOC100578631 [Apis mellifera]
Length = 878
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPV--VPVHVDIHYENGRPSGEADVDFATHEDAMQAM 134
S V MRGLPF+ +RD+ DFF + VP + + ++NG+P+GE +F T ++A++A
Sbjct: 642 SSDCVIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLHQNGKPAGECFCEFDTADEALRAT 701
Query: 135 SKD 137
+K+
Sbjct: 702 AKN 704
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ L + AN D+ FFR + +H G G+A + F+T EDA QAM D
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIVGGE-LGDAFIAFSTDEDARQAMMHDGG 62
Query: 140 NMQHRYIELFLNSSSPRGGV 159
++ I+L L+S + V
Sbjct: 63 KIKEMKIKLLLSSRTEMQKV 82
>gi|410987483|ref|XP_004000030.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Felis catus]
Length = 604
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
>gi|380019192|ref|XP_003693498.1| PREDICTED: uncharacterized protein LOC100871735 [Apis florea]
Length = 879
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPV--VPVHVDIHYENGRPSGEADVDFATHEDAMQAM 134
S V MRGLPF+ +RD+ DFF + VP + + ++NG+P+GE +F T ++A++A
Sbjct: 643 SSDCVIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLHQNGKPAGECFCEFDTADEALRAT 702
Query: 135 SKD 137
+K+
Sbjct: 703 AKN 705
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ L + AN D+ FFR + +H G G+A + F+T EDA QAM D
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIVGGE-LGDAFIAFSTDEDARQAMMHDGG 62
Query: 140 NMQHRYIELFLNSSSPRGGV 159
++ I+L L+S + V
Sbjct: 63 KIKEMKIKLLLSSRTEMQKV 82
>gi|443682871|gb|ELT87306.1| hypothetical protein CAPTEDRAFT_189098 [Capitella teleta]
Length = 639
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 16/110 (14%)
Query: 66 GGRWVNESSGPSRHT-------VHMRGLPFRANERDVADFFRP---VVPVH------VDI 109
GG + SRH+ V MRGLP+ V +FFR V V + +
Sbjct: 258 GGNNTEAQAFLSRHSDSGNQVIVRMRGLPYTCTAEQVLEFFRQGEQSVEVLDGDEGILFV 317
Query: 110 HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
H +GR +G+A V FA +DA +A+SK R ++ RYIELF ++++ V
Sbjct: 318 HQADGRATGDAFVLFANDDDATRALSKHRESIGTRYIELFKSTTAEVQQV 367
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 16/135 (11%)
Query: 26 FGGGSGPG-PIRGGPPRGGFRGGFNNDRWNDRPGGFAGPRP-----GGRWVNESSGPSRH 79
G + PG P R P G G N + P + P P +V+++ P+
Sbjct: 510 LGAFAQPGLPARSTPLAAGTYPGTNGYQ----PVMYWYPSPPVSPQSAYYVSQTQCPT-- 563
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMS- 135
TV ++GLPF D+ FF + + D+ + +GR +GEA + F + +A +A++
Sbjct: 564 TVVIKGLPFNVQVADILAFFEGIYEMQPDVQVQRGSDGRLTGEAYITFGSRSEAERAITE 623
Query: 136 KDRTNMQHRYIELFL 150
++R + +R++E+F+
Sbjct: 624 RNRKVIGNRFVEMFM 638
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ RGLP++++++D+A FF+ ++I + GR +GEA + F + E A+ K +
Sbjct: 182 VIRARGLPWQSSDQDIARFFQ-----GLNIANQQGRRNGEALIRFESKEHRDLALRKHKH 236
Query: 140 NMQHRYIELF 149
++ RYIE++
Sbjct: 237 HLGQRYIEVY 246
>gi|427788565|gb|JAA59734.1| Putative rna-binding protein [Rhipicephalus pulchellus]
Length = 1011
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMS 135
S V M+GLP+ +E+DV FF + + + + H +GR +G A V+F D AMS
Sbjct: 524 SDMVVVMKGLPYNTSEQDVLQFFSGLNVLDILVEHDRSGRATGMAFVEFGDKRDFETAMS 583
Query: 136 KDRTNMQHRYIELFLNS 152
R + HRYIEL + S
Sbjct: 584 MQRRKIGHRYIELSVGS 600
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 76 PSRHTVHMRGLPFRANERDVADFF--RPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQ 132
P V M GLP +RD+ADFF + V+P + I NG P+G A +FATH D +
Sbjct: 667 PGHTCVSMLGLPNTVTDRDIADFFSIQGVIPRAIHIMLGANGVPTGHAFAEFATHADCER 726
Query: 133 AMSKDRTNMQHRYIEL 148
A +D N+ I L
Sbjct: 727 AFLQDGANLGPHVIAL 742
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ LP+ AN D+ +F+ + +H G G+A + F + EDA QAM +D
Sbjct: 4 IIRLQNLPWAANSLDIRRYFQGLNIPEGGVHIVGGE-KGDAFIAFGSDEDARQAMERDGG 62
Query: 140 NMQHRYIELFLNSSS 154
++ I+L L+S +
Sbjct: 63 KIKEVRIKLLLSSRA 77
>gi|338728568|ref|XP_003365698.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Equus caballus]
Length = 604
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
>gi|383856881|ref|XP_003703935.1| PREDICTED: uncharacterized protein LOC100878893 [Megachile
rotundata]
Length = 1212
Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 81 VHMRGLPFRANERDVADFFRP-VVPVHV--------DIHYENGRPSGEADVDFATHEDAM 131
V MRGLP+ + V DFF P HV + +GR +G+A V FA EDA+
Sbjct: 856 VRMRGLPYDCVAKQVLDFFLTGQKPCHVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDAV 915
Query: 132 QAMSKDRTNMQHRYIELF 149
+A+SK R + RYIELF
Sbjct: 916 KALSKHRDCIGSRYIELF 933
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
V RGLP++++++D+A FFR + + GR +GEA V F E A+ +
Sbjct: 755 VRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFVNKEHRDMALKRH 814
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGS 164
+ +M RYIE++ S GV G S
Sbjct: 815 KHHMGGRYIEVYKASGEDFVGVAGGTS 841
>gi|427788569|gb|JAA59736.1| Putative rna-binding protein [Rhipicephalus pulchellus]
Length = 1004
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMS 135
S V M+GLP+ +E+DV FF + + + + H +GR +G A V+F D AMS
Sbjct: 524 SDMVVVMKGLPYNTSEQDVLQFFSGLNVLDILVEHDRSGRATGMAFVEFGDKRDFETAMS 583
Query: 136 KDRTNMQHRYIELFLNS 152
R + HRYIEL + S
Sbjct: 584 MQRRKIGHRYIELSVGS 600
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 76 PSRHTVHMRGLPFRANERDVADFF--RPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQ 132
P V M GLP +RD+ADFF + V+P + I NG P+G A +FATH D +
Sbjct: 667 PGHTCVSMLGLPNTVTDRDIADFFSIQGVIPRAIHIMLGANGVPTGHAFAEFATHADCER 726
Query: 133 AMSKDRTNMQHRYIEL 148
A +D N+ I L
Sbjct: 727 AFLQDGANLGPHVIAL 742
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ LP+ AN D+ +F+ + +H G G+A + F + EDA QAM +D
Sbjct: 4 IIRLQNLPWAANSLDIRRYFQGLNIPEGGVHIVGGE-KGDAFIAFGSDEDARQAMERDGG 62
Query: 140 NMQHRYIELFLNSSS 154
++ I+L L+S +
Sbjct: 63 KIKEVRIKLLLSSRA 77
>gi|355715636|gb|AES05391.1| RNA binding motif protein 19 [Mustela putorius furo]
Length = 823
Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 18/116 (15%)
Query: 56 RPGGFAGPRPGGRWVNESSGPSR---------------HTVHMRGLPFRANERDVADFFR 100
RPG AG G NE++G +R +TV +RG PF E++V +F
Sbjct: 262 RPG--AGAARGSPSRNETAGVARAEADKPATQKEPTTPYTVKLRGAPFNVTEKNVTEFLA 319
Query: 101 PVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSP 155
P+ PV + I +G +G VD ++ E+ QA+ R M RYIE+F + P
Sbjct: 320 PLRPVAIRIVRNAHGNKTGYIFVDLSSEEEVKQALRCHREYMGGRYIEVFREKNVP 375
>gi|449494990|ref|XP_002198687.2| PREDICTED: epithelial splicing regulatory protein 1 [Taeniopygia
guttata]
Length = 766
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF +V FF PV + + Y + RP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFNVTTEEVLTFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALKKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ +F VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 LAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+ RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M +RYIE++
Sbjct: 286 HKHHMGNRYIEVY 298
>gi|149063465|gb|EDM13788.1| RNA binding motif protein 19 (predicted) [Rattus norvegicus]
Length = 451
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMSKD 137
+TV +RG PF E++V +F P+ PV + I +G +G VD ++ E+ +A+ +
Sbjct: 294 YTVKLRGAPFNVTEKNVLEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCN 353
Query: 138 RTNMQHRYIELF--LNSSSPRGGVGGSGS 164
R M RYIE+F +S+ RG S +
Sbjct: 354 REYMGGRYIEVFREKQASAARGAPKSSSA 382
>gi|388499278|gb|AFK37705.1| unknown [Medicago truncatula]
Length = 94
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMS 135
+ MRGLPF + + DFF+ + +H +G+ +GEA V+F + ++A +AM
Sbjct: 5 EILKMRGLPFLVTKSQIIDFFKDYKLIEGRVHIACRPDGKVTGEAYVEFVSPDEAKRAMF 64
Query: 136 KDRTNMQHRYIELF 149
KD+ + RY+ELF
Sbjct: 65 KDKMTIGSRYVELF 78
>gi|313227785|emb|CBY22933.1| unnamed protein product [Oikopleura dioica]
Length = 559
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 83 MRGLPFRANERDVADFFRPVVPVH-----VDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
MRGLPF A++ D+ F + V+ I G+P+G+A V A+ +DA+QA+ +
Sbjct: 238 MRGLPFSASKEDILQFLCEIHIVNGRDGIFLIKTAEGKPTGDAFVLLASEDDAVQALGRH 297
Query: 138 RTNMQHRYIELF 149
+ N++ RY+E+F
Sbjct: 298 KANLRDRYVEVF 309
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPV-VP---VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
V +RG+P++ ++ D+A FFR + +P V + ++ +NGR SGEA + F E A+
Sbjct: 134 CVRVRGIPWQCSDHDLAKFFRGLNIPSGGVSLVLN-QNGRRSGEALIRFENSEHRNLALQ 192
Query: 136 KDRTNMQHRYIELF 149
+ R +M +RYIE+F
Sbjct: 193 RHRQHMGNRYIEVF 206
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 13/100 (13%)
Query: 78 RHTVHMRGLPFRANERDVADFF----RPVVP--VHVDIHYENGRPSGEADVDFATHEDAM 131
R+ V +RG+P+ A D+ +F + ++P VH+ ++ + GRPSG+A + HE A
Sbjct: 351 RNCVRLRGMPYSATLEDIMNFLGESSQFILPAGVHMVLN-QQGRPSGDAFIQLQAHEFAS 409
Query: 132 QAMSK------DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + +M RY+E+F S V G++
Sbjct: 410 RVALDVNKGGCHKKHMGERYVEVFQCSGDEMNLVLMGGTL 449
>gi|341896441|gb|EGT52376.1| hypothetical protein CAEBREN_32196, partial [Caenorhabditis
brenneri]
Length = 616
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH--VDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V MRGLP+ ++ + FF P+ + I +GRP+G+A V F T EDA + + K
Sbjct: 284 IVRMRGLPYDCSDNQIRAFFEPLKLTEKILFITRTDGRPTGDAFVQFETEEDAQKGLLKH 343
Query: 138 RTNMQHRYIELFLNSSSPRGGV 159
R + RYIELF ++++ V
Sbjct: 344 RHIIGQRYIELFKSTAAEVQQV 365
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 84 RGLPFRANERDVADFF--RPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTN 140
RGLP++A+++ VA FF +VP + + + GR +GE V FA+ E A+ + R
Sbjct: 188 RGLPWQASDQHVAQFFAGLDIVPCGIALCLSSEGRRNGEVLVQFASQESRDLALKRHRNF 247
Query: 141 MQHRYIELF 149
+ RYIE++
Sbjct: 248 LLSRYIEVY 256
>gi|327282636|ref|XP_003226048.1| PREDICTED: probable RNA-binding protein 19-like isoform 2 [Anolis
carolinensis]
Length = 938
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 62 GPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEA 120
G + GG NE + + +TV +RG PF E++V +F P+ PV + I +G +G
Sbjct: 279 GLKKGG--ANEPT--TSYTVKLRGAPFNVTEQNVREFLVPLRPVAIRIVRNAHGNKTGYV 334
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPR 156
VDF E+ +A+ ++ M RYIELF S +
Sbjct: 335 FVDFNNEEEVQKALKRNHEYMGGRYIELFYEEHSKK 370
>gi|327282634|ref|XP_003226047.1| PREDICTED: probable RNA-binding protein 19-like isoform 1 [Anolis
carolinensis]
Length = 945
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 62 GPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEA 120
G + GG NE + + +TV +RG PF E++V +F P+ PV + I +G +G
Sbjct: 279 GLKKGG--ANEPT--TSYTVKLRGAPFNVTEQNVREFLVPLRPVAIRIVRNAHGNKTGYV 334
Query: 121 DVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPR 156
VDF E+ +A+ ++ M RYIELF S +
Sbjct: 335 FVDFNNEEEVQKALKRNHEYMGGRYIELFYEEHSKK 370
>gi|148228969|ref|NP_001088073.1| RNA binding motif protein 19 [Xenopus laevis]
gi|52354760|gb|AAH82875.1| LOC494769 protein [Xenopus laevis]
Length = 920
Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMS 135
+ +TV +RG PF E++V +F P+ PV + I G +G VD ++ E+ +A+
Sbjct: 277 TSYTVKLRGAPFNVTEQNVKEFLVPLKPVAIRIARNTYGNKTGYVFVDLSSEEEVQKALK 336
Query: 136 KDRTNMQHRYIELF 149
+++ M RYIE+F
Sbjct: 337 RNKDYMGGRYIEVF 350
>gi|312091561|ref|XP_003147025.1| hypothetical protein LOAG_11458 [Loa loa]
Length = 88
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDRT 139
+H GLP+ D+ +FFRP+ V + + Y E R SG+A V F+T +A +A+S+++
Sbjct: 1 MHFSGLPYSVTTLDIEEFFRPLNCVEIKLGYNEERRLSGDALVSFSTMAEAREALSRNKN 60
Query: 140 NMQHRYI 146
NM R I
Sbjct: 61 NMGTRTI 67
>gi|241999526|ref|XP_002434406.1| RNA-binding protein, putative [Ixodes scapularis]
gi|215497736|gb|EEC07230.1| RNA-binding protein, putative [Ixodes scapularis]
Length = 1026
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMSKDR 138
V M+GLP+ +E DV FF + + + + H NGR +G V+FA+ D AM+ R
Sbjct: 634 VVVMKGLPYSCSETDVLQFFSGLNILDLFVEHDHNGRATGTGFVEFASKRDFDAAMNMHR 693
Query: 139 TNMQHRYIELFLNS 152
M HRYIEL + +
Sbjct: 694 RKMGHRYIELTVGT 707
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ M+ LP+ AN D+ +F+ + +H G G+A + F+T EDA QAM +D
Sbjct: 4 IIRMQNLPWAANSLDIRRYFQGLGIPEGGVHIVGGD-KGDAFIAFSTDEDARQAMERDAG 62
Query: 140 NMQHRYIELFLNS 152
++ I+L L+S
Sbjct: 63 KIKEVRIKLLLSS 75
Score = 36.2 bits (82), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 74 SGPSRHT-VHMRGLPFRANERDVADFFRP--VVPVHVDIHY-ENGRPSGEADVDFATHED 129
S P HT V M GLP +RD+ADFF V+P + I NG P+G A +FA H D
Sbjct: 751 SVPLAHTCVSMLGLPDTVTDRDIADFFSTQGVIPRAIHIMLGANGVPTGHAFAEFAAHAD 810
Query: 130 AMQAMSKDRTNMQHRYIEL 148
+A K+ ++ I L
Sbjct: 811 CERAFLKNGASLGPHTITL 829
>gi|354466972|ref|XP_003495945.1| PREDICTED: probable RNA-binding protein 19 [Cricetulus griseus]
gi|344237019|gb|EGV93122.1| putative RNA-binding protein 19 [Cricetulus griseus]
Length = 954
Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 62 GPRPGGRWVNESSGP-----------SRHTVHMRGLPFRANERDVADFFRPVVPVHVDI- 109
G PG + E++G + +TV +RG PF E++V +F P+ PV + I
Sbjct: 265 GAMPGSQRPQEATGKVEKPASKTEPTTPYTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIV 324
Query: 110 HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
+G +G VD ++ E+ +A+ +R M RYIE+F
Sbjct: 325 RNAHGNKTGYVFVDLSSEEEVKKALKCNREYMGGRYIEVF 364
>gi|402585392|gb|EJW79332.1| hypothetical protein WUBG_09760 [Wuchereria bancrofti]
Length = 236
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVV------PVHVDIHYENGRPSGEADVDFATHED 129
P + + +RGLPF A E+DV DF + + + NGR SGE V+ E
Sbjct: 3 PDTNYIRLRGLPFAAKEQDVRDFLQVFFFGLNAKSITFTLT-SNGRASGECYVELDDQEA 61
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGR 175
+A DR + RYIE+F S + + G I G GG R
Sbjct: 62 VKEAQKLDRNEINGRYIEVFSVSDAELLMMIRHGVIKGSGGDADSR 107
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDA 130
+S S V +RGLP+ A D+ +FF + I E GRPSGEA V AT E A
Sbjct: 105 DSRYASNFVVRLRGLPYSATIDDIKEFFSGLEVADAVIDKEPGGRPSGEAFVRLATKEYA 164
Query: 131 MQAMSKDRTNM-QHRYIELFL 150
A+ + + M + E+FL
Sbjct: 165 ELALERSKNYMGSRKESEVFL 185
>gi|363730887|ref|XP_418338.3| PREDICTED: epithelial splicing regulatory protein 1 [Gallus gallus]
Length = 636
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF +V FF PV + + Y + RP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALKKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ +F VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
A + + M+ RY+E+F S+ V G++ G S
Sbjct: 503 LAAQRCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLS 543
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+ RGLP++++++D+A FF+ + GR +GEA V F E A+ +
Sbjct: 226 VIRARGLPWQSSDQDIAKFFKGLNIAKGGAALCLNAQGRRNGEALVRFVNEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M +RYIE++
Sbjct: 286 HKHHMGNRYIEVY 298
>gi|47225436|emb|CAG11919.1| unnamed protein product [Tetraodon nigroviridis]
Length = 751
Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 81 VHMRGLPFRANERDVADFFRP------VVPVH------VDIHYENGRPSGEADVDFATHE 128
+ MRGLPF A V FF P PV + + Y +GRP+G+A V FA E
Sbjct: 355 IRMRGLPFTATHEQVLSFFSPGEGLKGTCPVSGGKDGILFVRYPDGRPTGDAFVLFACEE 414
Query: 129 DAMQAMSKDRTNMQHRYIELFLNSSS 154
A A+ K + + RYIELF ++++
Sbjct: 415 HAQCALRKHKEILGRRYIELFKSTAA 440
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
+ RGLP++++++D+A FFR + + GR +GEA V F + E A+ +
Sbjct: 254 IRARGLPWQSSDQDIARFFRGLNIAKGGVALCLNAQGRRNGEALVRFVSEEHRDLALQRH 313
Query: 138 RTNMQHRYIELF 149
+ +M +RYIE++
Sbjct: 314 KHHMGNRYIEVY 325
>gi|397478241|ref|XP_003810461.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Pan
paniscus]
Length = 314
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRY E+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYTEIFKSS 187
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + E+ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|77553600|gb|ABA96396.1| heterogeneous nuclear ribonucleoprotein, putative, expressed [Oryza
sativa Japonica Group]
Length = 235
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V +RGLPF ++ D+ FF + V + ++NGR +GEA V F + A A+ ++R N
Sbjct: 35 VRLRGLPFDCDDLDICKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQN 94
Query: 141 MQHRYIELF-LNSSSPRGGVGGSGSIGGFGGS 171
M RY+E+F + + GGF S
Sbjct: 95 MGRRYVEVFRCKKQEYYSAIAAEVNQGGFFDS 126
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATH 127
++SS + +RGLP+ A D+ FF ++H +G+ +GEA V+F T
Sbjct: 143 DKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTDENVHIVYRPDGKATGEAYVEFPTA 202
Query: 128 EDAMQAMSKDR----TNMQH 143
E AM KD+ T+M H
Sbjct: 203 EVVKTAMCKDKMTIGTSMHH 222
>gi|343470599|emb|CCD16749.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 473
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR----PVVPVHVDIHYENGRPSGEADVDFATHEDAM 131
PS + V +RG PF A E +A+FF P VH+ ++ E R +GEA V+ + +D +
Sbjct: 369 PSAYVVRIRGAPFSATEEAIAEFFSGVRIPTQGVHM-VYNEQNRLTGEAFVEVESKDDVL 427
Query: 132 QAMSKDRTNMQHRYIELFLNS 152
A+ K+ M RYIE+F +S
Sbjct: 428 LALRKNGGMMGTRYIEVFESS 448
>gi|195395450|ref|XP_002056349.1| GJ10899 [Drosophila virilis]
gi|194143058|gb|EDW59461.1| GJ10899 [Drosophila virilis]
Length = 615
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHE 128
G S + +RGLP+ A +++ DF V +H+ +G+ +GEA V+ A+ +
Sbjct: 57 GESPKFIRLRGLPWSATHKEILDFLVNVEVLNGSQGIHLVTSRVDGKNTGEAYVEVASQD 116
Query: 129 DAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGF 179
D +A ++ +M HRYIE+F+ ++P+ GG G + +L G
Sbjct: 117 DVEEARKLNKASMGHRYIEVFV--ATPKEAKEAMRKTGGHGHAFVVKLRGL 165
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD------IHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ E+ + +FF + + D + GR +GEA V F + +D QA
Sbjct: 159 VVKLRGLPYAVTEQQIEEFFTGL-EIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQA 217
Query: 134 MSKDRTNMQHRYIELFLNSSSP 155
+ ++R + HRYIE+F +S +
Sbjct: 218 LGRNREKIGHRYIEIFRSSIAE 239
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 17/85 (20%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADV--------DFATHED 129
+T+HMRGLP+ + E DV FF P+ P +V I+Y + G SG AD
Sbjct: 505 YTIHMRGLPYNSFENDVFKFFDPIRPANVRINYNKKGLHSGTADAYFDTYDDSQL----- 559
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSS 154
AM + R M RYIELF + +
Sbjct: 560 ---AMKRHREQMGSRYIELFYDGKT 581
>gi|300120417|emb|CBK19971.2| unnamed protein product [Blastocystis hominis]
Length = 378
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRPV-VP------VHVDIHYEN-GRPSGEADVDFATHEDAM 131
T+ +RGLP+ A + ++A FF P+ VP + + I +N RPSGEA V F++ ED+
Sbjct: 258 TLKLRGLPYTATKEEIAAFFAPLEVPRDAKGELTIVIGQDNLQRPSGEAFVTFSSVEDSA 317
Query: 132 QAMSKDRTNMQHRYIELF 149
+ + N+ RYIE+F
Sbjct: 318 KGLEYHLKNLGKRYIEIF 335
>gi|326917907|ref|XP_003205236.1| PREDICTED: epithelial splicing regulatory protein 1-like [Meleagris
gallopavo]
Length = 671
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF +V FF PV + + Y + RP+G+A V FA
Sbjct: 320 SKENQVIVRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACE 379
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 380 EYAQNALKKHKDLLGRRYIELFRSTAAEVQQV 411
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 443 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 501
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RYIE+F S+ V G++
Sbjct: 502 LAAQKCHKKTMKDRYIEVFQCSAEEMNFVLMGGTL 536
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 61 AGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPS 117
+GP V++++ + RGLP++++++D+A FF+ + GR +
Sbjct: 211 SGPCSKMELVDDNA-----VIRARGLPWQSSDQDIAKFFKGLNIAKGGAALCLNAQGRRN 265
Query: 118 GEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
GEA V F E A+ + + +M +RYIE++
Sbjct: 266 GEALVRFVNEEHRDLALQRHKHHMGNRYIEVY 297
>gi|291232095|ref|XP_002735981.1| PREDICTED: RBD (RNA binding domain) protein family member
(rbd-1)-like [Saccoglossus kowalevskii]
Length = 861
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 81 VHMRGLPFRANERDVADFFRP--VVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDR 138
+ MRG+PF +E+++++FF P VV +H+ + +NG+ G A V+ D +AM++ +
Sbjct: 277 IEMRGIPFYCSEKEISEFFAPIEVVAIHI-VKNKNGKQLGFARVELKNENDLKEAMTRHK 335
Query: 139 TNMQHRYIELFL 150
M+ R IE+ L
Sbjct: 336 DYMRGRCIEIAL 347
>gi|449016117|dbj|BAM79519.1| similar to heterogeneous nuclear ribonucleoprotein H3, isoform a
[Cyanidioschyzon merolae strain 10D]
Length = 642
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 24/103 (23%)
Query: 74 SGPSRHTVHMRGLPFRANERDVA--------------------DFFRPVVPVH----VDI 109
+ P V +RGLP+ A RDVA DF R + V V +
Sbjct: 307 ATPVGSVVRLRGLPWSATTRDVAEWIRQPPAKATMGADSSLLEDFIRRPLQVLPGGIVFV 366
Query: 110 HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ GR +GE V FA+ EDA + + K M HRYIE+FL+S
Sbjct: 367 YNHQGRKTGEVFVQFASPEDASRCLHKHEDRMGHRYIEVFLSS 409
>gi|401410426|ref|XP_003884661.1| GL11864, related [Neospora caninum Liverpool]
gi|325119079|emb|CBZ54631.1| GL11864, related [Neospora caninum Liverpool]
Length = 503
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 61 AGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFR-----PVVPVHVDIHYENGR 115
AGP GG +SS S + +RGLP+ ANE+ + FF ++P + I +GR
Sbjct: 389 AGPHHGGM---DSSNWSAQVLRLRGLPYSANEQHIVQFFNGFHMAAILPSTIPI---DGR 442
Query: 116 PSGEADVDFATHEDAMQAM-SKDRTNMQHRYIELFLNSSS 154
PSGEA V F +A +A +K+ M R IELF +S
Sbjct: 443 PSGEAYVQFVDAAEAFRAFQAKNGARMDKRMIELFPSSKQ 482
>gi|392332679|ref|XP_003752658.1| PREDICTED: probable RNA-binding protein 19 [Rattus norvegicus]
Length = 846
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 56 RPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENG 114
RP AG E + P +TV +RG PF E++V +F P+ PV + I +G
Sbjct: 273 RPQEAAGKVEKPASQKEPTTP--YTVKLRGAPFNVTEKNVLEFLAPLKPVAIRIVRNAHG 330
Query: 115 RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFL--NSSSPRGGVGGSGS 164
+G VD ++ E+ +A+ +R M RYIE+F +S+ RG S +
Sbjct: 331 NKTGYVFVDLSSEEEVKKALKCNREYMGGRYIEVFREKQASAARGAPKSSSA 382
>gi|392352553|ref|XP_003751242.1| PREDICTED: probable RNA-binding protein 19 [Rattus norvegicus]
Length = 955
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 56 RPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENG 114
RP AG E + P +TV +RG PF E++V +F P+ PV + I +G
Sbjct: 273 RPQEAAGKVEKPASQKEPTTP--YTVKLRGAPFNVTEKNVLEFLAPLKPVAIRIVRNAHG 330
Query: 115 RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFL--NSSSPRGGVGGSGS 164
+G VD ++ E+ +A+ +R M RYIE+F +S+ RG S +
Sbjct: 331 NKTGYVFVDLSSEEEVKKALKCNREYMGGRYIEVFREKQASAARGAPKSSSA 382
>gi|229485446|sp|B2RYJ8.1|ESRP2_RAT RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|187469463|gb|AAI66804.1| Rbm35b protein [Rattus norvegicus]
Length = 716
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH--VD----IHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV DF P PV VD + + +GRP+G+A FA E A A+
Sbjct: 349 LRLRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAAL 408
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 409 RRHKGMLGKRYIELFRSTAA 428
Score = 39.7 bits (91), Expect = 0.93, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 458 AGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMMS 516
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V GS+ G S
Sbjct: 517 VERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGSLSRSGLS 562
Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
V RGLP++++++DVA FF+ + + GR +GEA + F E A+ +
Sbjct: 248 VRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQRH 307
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ +M RYIE++ + + G S+
Sbjct: 308 KHHMGVRYIEVYKATGEEFVKIAGGTSL 335
>gi|229891743|sp|A8WPC5.2|SYM2_CAEBR RecName: Full=RNA-binding protein sym-2; AltName: Full=Synthetic
lethal with mec-8 protein 2
Length = 634
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH--VDIHYENGRPSGEAD--VDFATHEDAMQAMS 135
V MRGLP+ + + FF P+ + I +GRP+G D V F T EDA Q +
Sbjct: 286 IVRMRGLPYDCTDTQIRAFFEPLKLTEKILFITRTDGRPTGNCDAFVQFETEEDAQQGLL 345
Query: 136 KDRTNMQHRYIELFLNSSSPRGGV 159
K R + RYIELF ++++ V
Sbjct: 346 KHRQVIGQRYIELFKSTAAEVQQV 369
>gi|157818053|ref|NP_001100893.1| epithelial splicing regulatory protein 2 [Rattus norvegicus]
gi|149038076|gb|EDL92436.1| RNA binding motif protein 35b (predicted) [Rattus norvegicus]
Length = 717
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH--VD----IHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV DF P PV VD + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 39.7 bits (91), Expect = 0.93, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 459 AGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMMS 517
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V GS+ G S
Sbjct: 518 VERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGSLSRSGLS 563
Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
V RGLP++++++DVA FF+ + + GR +GEA + F E A+ +
Sbjct: 249 VRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQRH 308
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ +M RYIE++ + + G S+
Sbjct: 309 KHHMGVRYIEVYKATGEEFVKIAGGTSL 336
>gi|307196545|gb|EFN78075.1| RNA-binding protein 35A [Harpegnathos saltator]
Length = 760
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRP-VVPVHVD--------IHYENGRPSGEADVDFATHEDA 130
V MRGLP+ + V +FF P HV + +GR +G+A V FA EDA
Sbjct: 291 IVRMRGLPYDCVAKQVLEFFLSGQKPCHVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDA 350
Query: 131 MQAMSKDRTNMQHRYIELFLNSSS 154
++A+SK R + RYIELF ++++
Sbjct: 351 VKALSKHRDCIGSRYIELFRSTTA 374
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V RGLP++++++D+A FFR + V + + GR +GEA V F E A
Sbjct: 190 VVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLS---PMGRRNGEALVRFINKEHRDMA 246
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGG--SGSIGGFGGSGG 173
+ + + +M RYIE++ S GV G SG F G
Sbjct: 247 LKRHKHHMGARYIEVYKASGEDFVGVAGGTSGEAHAFLSRGA 288
>gi|358253640|dbj|GAA53549.1| epithelial splicing regulatory protein 1 [Clonorchis sinensis]
Length = 1176
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 81 VHMRGLPFRANERDVADFFRPV-VPVHVD------IHYENGRPSGEADVDFATHEDAMQA 133
V +RGLPF A ++ + DFF+ V PV ++ + Y GRP+G+A V F+ + A +A
Sbjct: 514 VRVRGLPFTATKQQILDFFKAVEAPVLLEANGIYLVAYPEGRPTGDAFVLFSDDKTATRA 573
Query: 134 MSKDRTNMQHRYIELFLNSSS 154
+ + + + RY+ELF S S
Sbjct: 574 LLRHKDYLGDRYVELFKASPS 594
>gi|312094676|ref|XP_003148104.1| hypothetical protein LOAG_12543 [Loa loa]
Length = 304
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDA 130
+S S V +RGLP+ A D+ +FF + I E GRPSGEA V AT E A
Sbjct: 116 DSRYASNFVVRLRGLPYSATIDDIKEFFSGLEVADAVIDKEPGGRPSGEAFVRLATKEYA 175
Query: 131 MQAMSKDRTNMQHRYIELFLNSS 153
A+ + + M RY+E+F +S+
Sbjct: 176 ELALERSKNYMGSRYVEVFRSSA 198
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHV-------------DIHY---ENGRPSGE 119
P + + +RGLPF A E+DV DF + + + I + NGR SGE
Sbjct: 3 PDTNYIRLRGLPFAAKEQDVRDFLQDISIWFLRYRSFFLFGLNAKSITFTLTSNGRASGE 62
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGG 178
V+ E +A DR + RYIE+F S + + G I G GG R
Sbjct: 63 CYVELDDQEAVKEAQKLDRNEINGRYIEVFSVSDAELLMMIRHGVIKGSGGDADSRYAS 121
>gi|384253335|gb|EIE26810.1| hypothetical protein COCSUDRAFT_46239 [Coccomyxa subellipsoidea
C-169]
Length = 877
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 35 IRGGPPRGGFRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERD 94
+R G R F N + + G P PG WV + MRGLP+ A D
Sbjct: 290 VRKGKSRKIFEIPEKNVQHIKQAQGLVDPFPG--WV----------LRMRGLPYGATAED 337
Query: 95 VADFFRPVVPVH--VDIHYE---NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
V FF + I + +GRP GEA V+F + + +A+ + + + RYIELF
Sbjct: 338 VVHFFEGIEIERGSAGIAFTCTPDGRPKGEAYVEFPSEDAQKEALKRHKNEIGDRYIELF 397
Query: 150 LNSSS 154
++S +
Sbjct: 398 VSSKA 402
>gi|348528569|ref|XP_003451789.1| PREDICTED: probable RNA-binding protein 19 [Oreochromis niloticus]
Length = 926
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 61 AGPRPGGRWVNESSGPSRH-TVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSG 118
+G R V S+ P+ TV +RG+PF E+ + +F P+ P V I E+G +G
Sbjct: 270 SGDRENISKVKSSTEPTTEFTVKLRGVPFNVKEKQIREFMTPLKPAAVRIGKNESGNRTG 329
Query: 119 EADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
VD + E+ +A+ K++ + RYIE+F
Sbjct: 330 YVYVDLHSEEEVEKALKKNKDYIGGRYIEVF 360
>gi|327269521|ref|XP_003219542.1| PREDICTED: epithelial splicing regulatory protein 1-like [Anolis
carolinensis]
Length = 648
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF +V FF PV + + Y + RP+G+A V FA
Sbjct: 314 SKENQVIVRMRGLPFNVTTEEVLTFFGQHCPVTGGKEGILFVTYPDHRPTGDAFVLFACE 373
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 374 EYAQNALKKHKDLLGKRYIELFRSTAAEVQQV 405
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ F VH+ ++++ GRPSG+A + + E A
Sbjct: 437 RDCIRLRGLPYAATIEDILGFLGEFSADIRTHGVHMVLNHQ-GRPSGDAFIQMKSSERAF 495
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 496 MAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 530
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+ RGLP++++++DVA FF+ + GR +GEA V F + E A+ +
Sbjct: 219 IIRARGLPWQSSDQDVARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 278
Query: 137 DRTNMQHRYIELF 149
+ +M +RYIE++
Sbjct: 279 HKHHMGNRYIEVY 291
>gi|348534026|ref|XP_003454504.1| PREDICTED: RNA-binding protein 12B-A-like [Oreochromis niloticus]
Length = 634
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++GLPF E+++ DFF VV V I G +G V FAT EDAM+ + +DR
Sbjct: 140 LFLKGLPFSVTEKEICDFFGGLVVDEVVLIKNRQGLNNGTGFVKFATREDAMEGLKRDRE 199
Query: 140 NMQHRYIEL 148
+ RYIE+
Sbjct: 200 YIGSRYIEI 208
>gi|90018164|gb|ABD83895.1| hypothetical protein [Ictalurus punctatus]
Length = 157
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + +VA FF +H+ + GRPSGEA V+ + ++ A
Sbjct: 8 VVRVRGLPWSCSVDEVARFFSDCKVANNGTSIHLT-YTREGRPSGEAFVELESEDELKIA 66
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR M HRY+E+F
Sbjct: 67 LKKDRETMGHRYVEVF 82
>gi|395513917|ref|XP_003761168.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-binding protein 19
[Sarcophilus harrisii]
Length = 954
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDA 130
+S + +TV +RG PF E++V +F P+ PV + I +G +G VDF++ D
Sbjct: 278 QSEPTTAYTVKLRGAPFNVTEQNVREFLVPLKPVAIRIVRNAHGNKTGYVFVDFSSEGDV 337
Query: 131 MQAMSKDRTNMQHRYIELFLNSSSPRGG 158
+A+ ++ M RYIE+F PR G
Sbjct: 338 EKALKHNKEYMGGRYIEVF-REKGPRVG 364
>gi|300122335|emb|CBK22907.2| unnamed protein product [Blastocystis hominis]
Length = 546
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRPV-VP------VHVDIHYENG-RPSGEADVDFATHEDAM 131
T+ +RGLP+ A + ++A FF P+ VP + + I +N RPSGEA V F++ ED+
Sbjct: 435 TLKLRGLPYTATKEEIAAFFAPLEVPRDAKGELTIVIGQDNKQRPSGEAFVTFSSVEDSA 494
Query: 132 QAMSKDRTNMQHRYIELF 149
+ + N+ RYIE+F
Sbjct: 495 KGLEYHLKNLGKRYIEIF 512
>gi|299472433|emb|CBN77621.1| heterogeneous nuclear ribonucleoprotein, putative [Ectocarpus
siliculosus]
Length = 305
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVD-IHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF A DV FF+ +VP+ V + +GR +GEA V + A+S+D+
Sbjct: 92 VRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRADGRGAGEAIVVLPNLMEMQMALSRDKQ 151
Query: 140 NMQHRYIELF 149
+M RYIE+F
Sbjct: 152 HMGRRYIEIF 161
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 9/90 (10%)
Query: 76 PSRHT--VHMRGLPFRANERDVADFFRPVVPVHVD-IHYE---NGRPSGEADVDFATHED 129
P HT + MRGLPF A ++DV +FF+ + PV D I + +GR +GEA V F++ +
Sbjct: 213 PVVHTGVIRMRGLPFSATKQDVLNFFQGM-PVTEDTIQFVVRGDGRVTGEAFVSFSSPAE 271
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
+ AMS++ +M RY+ELF +S+P V
Sbjct: 272 SEAAMSRNGNHMGTRYVELF--ASTPEEIV 299
>gi|324501689|gb|ADY40749.1| Heterogeneous nuclear ribonucleoprotein H2 [Ascaris suum]
Length = 152
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V RGLP+ E ++ FF+P V I + RPSGEA V F +ED A+++
Sbjct: 56 VVKCRGLPWSCTEEEIRIFFQPADRSIVKITLTKNRDARPSGEAFVAFNNNEDYEYALTR 115
Query: 137 DRTNMQHRYIELFL 150
D+ +M RYIE+++
Sbjct: 116 DKQHMGKRYIEVWI 129
>gi|74202595|dbj|BAE24862.1| unnamed protein product [Mus musculus]
Length = 171
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSSSPRGGV 159
KDR M HRY+E+F ++S V
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWV 96
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 11/78 (14%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFF--RPVVP--VHVDIHYENGRPSG 118
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + ++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 119 EADVDFATHEDAMQAMSK 136
EA V FA+ E A +A+ K
Sbjct: 154 EAFVQFASQEIAEKALKK 171
>gi|328779875|ref|XP_397080.4| PREDICTED: epithelial splicing regulatory protein 2 [Apis
mellifera]
Length = 1215
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 81 VHMRGLPFRANERDVADFF-RPVVPVHV--------DIHYENGRPSGEADVDFATHEDAM 131
V MRGLP+ + V FF P HV + +GR +G+A V FA EDA+
Sbjct: 859 VRMRGLPYDCVAKQVVXFFLSGQKPCHVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDAV 918
Query: 132 QAMSKDRTNMQHRYIELF 149
+A+SK R + RYIELF
Sbjct: 919 KALSKHRDCIGSRYIELF 936
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
V RGLP++++++D+A FFR + + GR +GEA V F E A+ +
Sbjct: 758 VRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFVNKEHRDMALKRH 817
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGS 164
+ +M RYIE++ S GV G S
Sbjct: 818 KHHMGGRYIEVYKASGEDFVGVAGGTS 844
>gi|428170681|gb|EKX39604.1| hypothetical protein GUITHDRAFT_54250, partial [Guillardia theta
CCMP2712]
Length = 186
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 83 MRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKDRT 139
+RGLP+ A D+ +FF+ + I++ GRP+GEA V F T D +A+ +DR
Sbjct: 4 VRGLPYSAATADIEEFFKGCAILKDGINFVLSHGGRPAGEAFVTFETENDCRRALMRDRD 63
Query: 140 NMQHRYIELFLNSSSPR-GGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFE 189
M RY+E++ +S + + + S S GG DPS+ ++
Sbjct: 64 LMNKRYVEVYPSSEDEKHVAITSAVSYAQDDQSSGG--------DPSTSYK 106
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENG---------RPSGEADVDFATHEDA 130
V +RGLP+ D+ FF H+ I E+G R +GEA V+F
Sbjct: 108 VVKLRGLPYSITADDIRSFFG-----HLSIK-EDGIIICLNRERRNNGEAFVEFTDEYVV 161
Query: 131 MQAMSKDRTNMQHRYIELFLNSSS 154
+A+ KDR + RY+E+F +S +
Sbjct: 162 DEAVKKDRQMIGSRYVEVFRSSKA 185
>gi|449268059|gb|EMC78930.1| putative RNA-binding protein 19, partial [Columba livia]
Length = 922
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDA 130
E+S P HTV +RG+P E+ + +FF P+ PV + I + G+ SG VD + D
Sbjct: 294 ETSTP--HTVKLRGVPSNITEQKIREFFLPLKPVAIRIGKKARGKNSGYVFVDLKSEADM 351
Query: 131 MQAMSKDRTNMQHRYIELFLNSSSPR 156
+A+ + + + R IE+F S++P+
Sbjct: 352 QRALKRKKEYLGGRCIEVFRCSNTPK 377
>gi|322778928|gb|EFZ09344.1| hypothetical protein SINV_16613 [Solenopsis invicta]
Length = 565
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRP-VVPVHVD--------IHYENGRPSGEADVDFATHEDA 130
V MRGLP+ + V +FF+ P V + +GR +G+A V FA EDA
Sbjct: 79 IVRMRGLPYDCVAKQVLEFFQSGQKPCQVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDA 138
Query: 131 MQAMSKDRTNMQHRYIELFLNSSS 154
++A+SK R + RYIELF ++++
Sbjct: 139 VKALSKHRDCIGSRYIELFRSTTA 162
>gi|221483341|gb|EEE21660.1| RNA recognition motif-containing protein, putative [Toxoplasma
gondii GT1]
Length = 508
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 61 AGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFR-----PVVPVHVDIHYENGR 115
AGP GG +++ S + +RGLP+ ANE+ + FF ++P + I +GR
Sbjct: 394 AGPHHGGM---DTANWSAQVLRLRGLPYSANEQHIVQFFHGFHMAAILPSTIPI---DGR 447
Query: 116 PSGEADVDFATHEDAMQAM-SKDRTNMQHRYIELFLNSSS 154
PSGEA V F +A++A +K+ M R IELF +S
Sbjct: 448 PSGEAYVQFVDAAEALRAFQAKNGGRMDKRMIELFPSSKQ 487
>gi|156401535|ref|XP_001639346.1| predicted protein [Nematostella vectensis]
gi|156226474|gb|EDO47283.1| predicted protein [Nematostella vectensis]
Length = 90
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-----NGRPSGEADVDFATHEDAMQAM 134
V M GLPF +++RD+ FF + +D+ G+ +G A V F ++ DA +A+
Sbjct: 17 IVRMFGLPFESSKRDLYKFFNGLKIASIDLLKHKSGKNQGKNTGVAFVVFKSNNDASKAL 76
Query: 135 SKDRTNMQHRYIEL 148
DR+ + HRYIEL
Sbjct: 77 KMDRSYIGHRYIEL 90
>gi|221507828|gb|EEE33415.1| RNA recognition motif-containing protein, putative [Toxoplasma
gondii VEG]
Length = 510
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 61 AGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFR-----PVVPVHVDIHYENGR 115
AGP GG +++ S + +RGLP+ ANE+ + FF ++P + I +GR
Sbjct: 396 AGPHHGGM---DTANWSAQVLRLRGLPYSANEQHIVQFFHGFHMAAILPSTIPI---DGR 449
Query: 116 PSGEADVDFATHEDAMQAM-SKDRTNMQHRYIELFLNSSS 154
PSGEA V F +A++A +K+ M R IELF +S
Sbjct: 450 PSGEAYVQFVDAAEALRAFQAKNGGRMDKRMIELFPSSKQ 489
>gi|24653903|ref|NP_725480.1| fusilli, isoform A [Drosophila melanogaster]
gi|7303049|gb|AAF58117.1| fusilli, isoform A [Drosophila melanogaster]
Length = 557
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 81 VHMRGLPFRANERDVADFFRP--VVPVHVD--------IHYENGRPSGEADVDFATHEDA 130
+ MRGLP+ A + V DFF P HV + +GR +G+A V FA DA
Sbjct: 48 IRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDA 107
Query: 131 MQAMSKDRTNMQHRYIELFLNSSS 154
+A+ + R ++ RYIELF ++++
Sbjct: 108 PKALGRHRESIGQRYIELFRSTTA 131
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 12/88 (13%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVA----DFFRPVVP--VHVDIHYENGRPSGEADVDFAT 126
+SG +++ + +RGLP+ A + DF + ++ VH+ I+ + G+PSGEA +
Sbjct: 206 TSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQ-GQPSGEAFIQMDL 264
Query: 127 HEDA-MQAMSKDRTNM----QHRYIELF 149
E A + A + M ++RYIE+F
Sbjct: 265 EESARLCAQRRHNHYMMFGKKYRYIEVF 292
>gi|332029325|gb|EGI69308.1| RNA-binding protein fusilli [Acromyrmex echinatior]
Length = 677
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRP-VVPVHVD--------IHYENGRPSGEADVDFATHEDA 130
V MRGLP+ + V +FF+ P V + +GR +G+A V FA EDA
Sbjct: 291 IVRMRGLPYDCVAKQVLEFFQSGQKPCQVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDA 350
Query: 131 MQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
++A+SK R + RYIELF ++++ V
Sbjct: 351 VKALSKHRDCIGSRYIELFRSTTAEVQQV 379
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V RGLP++++++D+A FFR + V + + GR +GEA V F E A
Sbjct: 190 VVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLS---PMGRRNGEALVRFINKEHRDMA 246
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGG--SGSIGGFGGSGG 173
+ + + +M RYIE++ S GV G SG F G
Sbjct: 247 LKRHKHHMGARYIEVYKASGEDFIGVAGGTSGEAHAFLSRGA 288
>gi|240849679|gb|ACS54296.1| RE48185p [Drosophila melanogaster]
Length = 860
Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 81 VHMRGLPFRANERDVADFFRP--VVPVHV--------DIHYENGRPSGEADVDFATHEDA 130
+ MRGLP+ A + V DFF P HV + +GR +G+A V FA DA
Sbjct: 382 IRMRGLPYDATAKQVLDFFTTGDAPPCHVLDGNEGVLFVEKPDGRATGDAFVLFANETDA 441
Query: 131 MQAMSKDRTNMQHRYIELFLNSSS 154
+A+ + R ++ RYIELF ++++
Sbjct: 442 PKALGRHRESIGQRYIELFRSTTA 465
>gi|307181801|gb|EFN69244.1| RNA-binding protein 35A [Camponotus floridanus]
Length = 762
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRP-VVPVHVD--------IHYENGRPSGEADVDFATHEDA 130
V MRGLP+ + V +FF+ P V + +GR +G+A V FA EDA
Sbjct: 289 IVRMRGLPYDCIAKQVLEFFQSGQKPCQVLDGEEGVLFVKKPDGRATGDAFVLFAKEEDA 348
Query: 131 MQAMSKDRTNMQHRYIELFLNSSS 154
++A+SK R + RYIELF ++++
Sbjct: 349 VKALSKHRDLIGSRYIELFRSTTA 372
Score = 39.7 bits (91), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V RGLP++++++D+A FFR + V + + GR +GEA V F E A
Sbjct: 188 VVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLS---PMGRRNGEALVRFINKEHRDMA 244
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGG--SGSIGGFGGSGGGRL 176
+ + + +M RYIE++ S G+ G SG F G +
Sbjct: 245 LKRHKHHMGPRYIEVYKASGEDFVGIAGGTSGEAHAFLSRGAQVI 289
>gi|386768028|ref|NP_001246347.1| fusilli, isoform H [Drosophila melanogaster]
gi|383302505|gb|AFH08101.1| fusilli, isoform H [Drosophila melanogaster]
Length = 526
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 81 VHMRGLPFRANERDVADFFRP--VVPVHVD--------IHYENGRPSGEADVDFATHEDA 130
+ MRGLP+ A + V DFF P HV + +GR +G+A V FA DA
Sbjct: 48 IRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDA 107
Query: 131 MQAMSKDRTNMQHRYIELFLNSSS 154
+A+ + R ++ RYIELF ++++
Sbjct: 108 PKALGRHRESIGQRYIELFRSTTA 131
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 12/88 (13%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVA----DFFRPVVP--VHVDIHYENGRPSGEADVDFAT 126
+SG +++ + +RGLP+ A + DF + ++ VH+ I+ + G+PSGEA +
Sbjct: 175 TSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQ-GQPSGEAFIQMDL 233
Query: 127 HEDA-MQAMSKDRTNM----QHRYIELF 149
E A + A + M ++RYIE+F
Sbjct: 234 EESARLCAQRRHNHYMMFGKKYRYIEVF 261
>gi|440804101|gb|ELR24980.1| Znfinger in Ran binding protein [Acanthamoeba castellanii str.
Neff]
Length = 732
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 70 VNESSGPSRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEADVDFA 125
+ E S + MRGLP+ A + DV FF +VP +H+ IH GRPSG A V+F+
Sbjct: 235 LAEGSEEETKVIVMRGLPWSATDADVGMFFSGLDIVPGGIHL-IHDHTGRPSGVAYVEFS 293
Query: 126 THEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGS 164
+ E+ A+ + + RYIE++ + ++ + S +
Sbjct: 294 SAEEVNNALQRHNGFIGSRYIEVYPSDANSLTAILASQA 332
>gi|281363439|ref|NP_001163161.1| fusilli, isoform G [Drosophila melanogaster]
gi|272432494|gb|ACZ94433.1| fusilli, isoform G [Drosophila melanogaster]
Length = 860
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 81 VHMRGLPFRANERDVADFFRP--VVPVHV--------DIHYENGRPSGEADVDFATHEDA 130
+ MRGLP+ A + V DFF P HV + +GR +G+A V FA DA
Sbjct: 382 IRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDA 441
Query: 131 MQAMSKDRTNMQHRYIELFLNSSS 154
+A+ + R ++ RYIELF ++++
Sbjct: 442 PKALGRHRESIGQRYIELFRSTTA 465
Score = 39.7 bits (91), Expect = 0.88, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
V RGLP++++++D+A FFR + + GR +GEA + F E A+ +
Sbjct: 281 VRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKRH 340
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGS 164
+ ++ RYIE++ S + G S
Sbjct: 341 KHHIGTRYIEVYRASGEDFLAIAGGAS 367
>gi|332227572|ref|XP_003262966.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Nomascus leucogenys]
Length = 717
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 410 RRHKAMLGKRYIELFRSTAA 429
Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 459 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 518 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
Score = 40.0 bits (92), Expect = 0.79, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 245 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 304
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 305 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 336
>gi|195334671|ref|XP_002034000.1| GM20128 [Drosophila sechellia]
gi|194125970|gb|EDW48013.1| GM20128 [Drosophila sechellia]
Length = 885
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRP--VVPVHVD--------IHYENGRPSGEADVDFAT 126
++ + MRGLP+ A + V DFF P HV + +GR +G+A V FA
Sbjct: 371 AQVIIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAN 430
Query: 127 HEDAMQAMSKDRTNMQHRYIELFLNSSS 154
DA +A+ + R ++ RYIELF ++++
Sbjct: 431 ETDAPKALGRHRESIGQRYIELFRSTTA 458
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V RGLP++++++D+A FFR + V + + GR +GEA + F E A
Sbjct: 273 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLS---PLGRRNGEALIRFVCQEHRDMA 329
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGS 164
+ + + ++ RYIE++ S + G S
Sbjct: 330 LKRHKHHIGTRYIEVYRASGEDFLAIAGGAS 360
>gi|417404143|gb|JAA48844.1| Putative rna-binding protein fusilli [Desmodus rotundus]
Length = 717
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV +F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPADVLEFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 43.1 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
++G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 459 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 518 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 245 SETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 304
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 305 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 336
>gi|126324467|ref|XP_001378428.1| PREDICTED: probable RNA-binding protein 19 [Monodelphis domestica]
Length = 969
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 50 NDRWNDRPG-GFAGPRPGGRWVNESSGPSR--------HTVHMRGLPFRANERDVADFFR 100
+D+ ++P G G + G + +++ G R +TV +RG PF E++V +F
Sbjct: 243 SDKEEEQPTPGPRGSKTGPKQPSQAQGEVRNVTAPTTAYTVKLRGAPFNVTEQNVREFLL 302
Query: 101 PVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
P+ P+ + I +G +G VDF + D +A+ +++ M RYIE+F
Sbjct: 303 PLKPMAIRIVRNAHGNKTGYVFVDFNSEGDVEKALKRNKDYMGGRYIEVF 352
>gi|332227574|ref|XP_003262967.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Nomascus leucogenys]
Length = 727
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 360 LRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 419
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 420 RRHKAMLGKRYIELFRSTAA 439
Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 469 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 527
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 528 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 573
Score = 40.0 bits (92), Expect = 0.79, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 255 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 314
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 315 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 346
>gi|24653901|ref|NP_725479.1| fusilli, isoform C [Drosophila melanogaster]
gi|21645394|gb|AAM70980.1| fusilli, isoform C [Drosophila melanogaster]
Length = 891
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 81 VHMRGLPFRANERDVADFFRP--VVPVHV--------DIHYENGRPSGEADVDFATHEDA 130
+ MRGLP+ A + V DFF P HV + +GR +G+A V FA DA
Sbjct: 382 IRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDA 441
Query: 131 MQAMSKDRTNMQHRYIELFLNSSS 154
+A+ + R ++ RYIELF ++++
Sbjct: 442 PKALGRHRESIGQRYIELFRSTTA 465
Score = 39.7 bits (91), Expect = 0.93, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
V RGLP++++++D+A FFR + + GR +GEA + F E A+ +
Sbjct: 281 VRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKRH 340
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGS 164
+ ++ RYIE++ S + G S
Sbjct: 341 KHHIGTRYIEVYRASGEDFLAIAGGAS 367
>gi|149052457|gb|EDM04274.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_c [Rattus
norvegicus]
Length = 134
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH-----VDIHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|432874359|ref|XP_004072458.1| PREDICTED: probable RNA-binding protein 19-like [Oryzias latipes]
Length = 921
Score = 50.1 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDA 130
E + TV +RG+PF E+ + +F P+ P + I E+G+ +G VD + E+
Sbjct: 281 EMEPATEFTVKLRGVPFSVKEQQIKEFMTPLRPAAIRIGKNESGQRTGYVYVDLHSEEEV 340
Query: 131 MQAMSKDRTNMQHRYIELF 149
+A+ K++ + RYIE+F
Sbjct: 341 NKALKKNKDYIGGRYIEVF 359
>gi|340716874|ref|XP_003396916.1| PREDICTED: hypothetical protein LOC100648364 [Bombus terrestris]
Length = 885
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S + MRGLPF+ +RD+ DFF + V IH +NG+P+GE +F T ++A++A
Sbjct: 649 SSDCIIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLLNQNGKPAGECFCEFDTADEALRA 708
Query: 134 MSKD 137
+K+
Sbjct: 709 TAKN 712
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ L + AN D+ FFR + +H G G+A + F+T EDA QAM D
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIVGGE-LGDAFIAFSTDEDARQAMMHDGG 62
Query: 140 NMQHRYIELFLNSSSPRGGV 159
++ I+L L+S + V
Sbjct: 63 KIKEMKIKLLLSSRTEMQKV 82
>gi|194882767|ref|XP_001975482.1| GG22342 [Drosophila erecta]
gi|190658669|gb|EDV55882.1| GG22342 [Drosophila erecta]
Length = 892
Score = 50.1 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 81 VHMRGLPFRANERDVADFFRP--VVPVHV--------DIHYENGRPSGEADVDFATHEDA 130
+ MRGLP+ A + V DFF P HV + +GR +G+A V FA DA
Sbjct: 382 IRMRGLPYDATAKQVLDFFTAGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAHESDA 441
Query: 131 MQAMSKDRTNMQHRYIELFLNSSS 154
+A+ + R ++ RYIELF ++++
Sbjct: 442 SKALCRHRESIGQRYIELFRSTTA 465
Score = 39.7 bits (91), Expect = 0.95, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
V RGLP++++++D+A FFR + + GR +GEA + F E A+ +
Sbjct: 281 VRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKRH 340
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGS 164
+ ++ RYIE++ S + G S
Sbjct: 341 KHHIGTRYIEVYRASGEDFLAIAGGAS 367
>gi|350396590|ref|XP_003484604.1| PREDICTED: hypothetical protein LOC100745803 [Bombus impatiens]
Length = 885
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S + MRGLPF+ +RD+ DFF + V IH +NG+P+GE +F T ++A++A
Sbjct: 649 SSDCIIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLLNQNGKPAGECFCEFDTADEALRA 708
Query: 134 MSKD 137
+K+
Sbjct: 709 TAKN 712
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ L + AN D+ FFR + +H G G+A + F+T EDA QAM D
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIVGGE-LGDAFIAFSTDEDARQAMMHDGG 62
Query: 140 NMQHRYIELFLNSSSPRGGV 159
++ I+L L+S + V
Sbjct: 63 KIKEMKIKLLLSSRTEMQKV 82
>gi|119627576|gb|EAX07171.1| hCG1641872, isoform CRA_b [Homo sapiens]
Length = 410
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 70 VNESSGPSRHTVHM-RGLPFRANERDVADFFRP--VVPVHVDIHYENGRPSGEADVDFAT 126
+ + P T +M GLP +A + D+ + F P +V VH+++ +GR +G+ADV+FAT
Sbjct: 182 TSATVSPECMTTNMATGLPCKATKSDIYNLFSPSNLVRVHIEMG-PDGRVTGKADVEFAT 240
Query: 127 HEDAMQAMSKDR 138
E+A+ A S+DR
Sbjct: 241 REEAVAATSRDR 252
>gi|402580830|gb|EJW74779.1| hypothetical protein WUBG_14313, partial [Wuchereria bancrofti]
Length = 292
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 76 PSRHT--VHMRGLPFRANERDVADFFRPVVPVH--VDIHYE--NGRPSGEADVDFATHED 129
P R T V + GLP+ + ++ FF P+ + + Y+ +G+P GEA V F E
Sbjct: 22 PGRETSIVRLGGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVAFIDDES 81
Query: 130 AMQAMSKDRTNMQHRYIELFLNS 152
A +A++K++ +QHRY++++ +S
Sbjct: 82 ASKALAKNKEYIQHRYVDIYPSS 104
>gi|345308102|ref|XP_001505380.2| PREDICTED: epithelial splicing regulatory protein 2-like
[Ornithorhynchus anatinus]
Length = 729
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
+ +RGLPF A DV F P PV + + Y +GRP+G+A FA + A A
Sbjct: 348 IIRLRGLPFSATPDDVLGFLGPECPVTGGPEGLLFVRYPDGRPTGDAFALFACEDAAQSA 407
Query: 134 MSKDRTNMQHRYIELFLNSSS 154
+ + + + RYIELF ++++
Sbjct: 408 LRRHKGILGKRYIELFRSTAA 428
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R V +RGLP+ A DV DF VH+ ++ + GRPSG+A + + E A
Sbjct: 466 RDCVRLRGLPYTAGIDDVLDFMGEATADIRPHGVHMVLN-QQGRPSGDAFIQMKSAERAQ 524
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
A + + M+ RY+E+F S V GS+ G S
Sbjct: 525 VAAQRCHKKMMKERYVEVFPCSGDEMSLVLMGGSLNRSGLS 565
>gi|195488502|ref|XP_002092343.1| GE14142 [Drosophila yakuba]
gi|194178444|gb|EDW92055.1| GE14142 [Drosophila yakuba]
Length = 889
Score = 50.1 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 81 VHMRGLPFRANERDVADFFRP--VVPVHV--------DIHYENGRPSGEADVDFATHEDA 130
+ MRGLP+ A + V DFF P HV + +GR +G+A V FA DA
Sbjct: 382 IRMRGLPYDATAKQVLDFFTAGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAHESDA 441
Query: 131 MQAMSKDRTNMQHRYIELFLNSSS 154
+A+ + R ++ RYIELF ++++
Sbjct: 442 SKALCRHRESIGQRYIELFRSTTA 465
Score = 39.7 bits (91), Expect = 0.92, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
V RGLP++++++D+A FFR + + GR +GEA + F E A+ +
Sbjct: 281 VRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFECQEHRDMALKRH 340
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGS 164
+ ++ RYIE++ S + G S
Sbjct: 341 KHHIGSRYIEVYRASGEDFLAIAGGAS 367
>gi|24653910|ref|NP_725483.1| fusilli, isoform B [Drosophila melanogaster]
gi|21645398|gb|AAM70984.1| fusilli, isoform B [Drosophila melanogaster]
gi|27820059|gb|AAO25059.1| GH20047p [Drosophila melanogaster]
gi|71834259|gb|AAZ41802.1| GH11127p [Drosophila melanogaster]
gi|220947106|gb|ACL86096.1| fus-PB [synthetic construct]
Length = 633
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRP--VVPVHVD--------IHYENGRPSGEADVDFATHED 129
+ MRGLP+ A + V DFF P HV + +GR +G+A V FA D
Sbjct: 47 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 106
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSS 154
A +A+ + R ++ RYIELF ++++
Sbjct: 107 APKALGRHRESIGQRYIELFRSTTA 131
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 12/88 (13%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVA----DFFRPVVP--VHVDIHYENGRPSGEADVDFAT 126
+SG +++ + +RGLP+ A + DF + ++ VH+ I+ + G+PSGEA +
Sbjct: 206 TSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQ-GQPSGEAFIQMDL 264
Query: 127 HEDA-MQAMSKDRTNM----QHRYIELF 149
E A + A + M ++RYIE+F
Sbjct: 265 EESARLCAQRRHNHYMMFGKKYRYIEVF 292
>gi|307197792|gb|EFN78921.1| RNA-binding protein 12 [Harpegnathos saltator]
Length = 885
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S + MRGLPF+ +RD+ DFF + V IH +NG+P+GE +F T ++A++A
Sbjct: 647 SSDCIIMRGLPFQTIDRDILDFFSDIGIVPHRIHMMLNQNGKPAGECFCEFDTTDEALRA 706
Query: 134 MSKD 137
+K+
Sbjct: 707 TAKN 710
Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ L + AN D+ FFR + +H G G+A + F+T EDA QAM D
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIVGGE-LGDAFIAFSTDEDARQAMMHDGG 62
Query: 140 NMQHRYIELFLNSSSPRGGV 159
++ I+L L+S + V
Sbjct: 63 KIKEMKIKLLLSSRTEMQKV 82
>gi|71896463|ref|NP_001026115.1| RNA-binding protein 12B [Gallus gallus]
gi|53136630|emb|CAG32644.1| hypothetical protein RCJMB04_31o3 [Gallus gallus]
Length = 698
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 32 PGPIRGGPPRGGF--------RGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHT-VH 82
P RG PP F R F N++ + P G P P N S G R +
Sbjct: 571 PKDFRGPPPLMDFGGDSKPFGRMEFGNNKMGNFPEGRFMPDP-----NFSGGSDRIVPIR 625
Query: 83 MRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSK 136
++ LPF+A ++ DFF V+P V + Y E G PSG+A V +E+AM A+++
Sbjct: 626 LKNLPFKATPNEILDFFYGYRVIPESVSVQYNEQGLPSGDAIVAMTNYEEAMTAINE 682
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 56 RPGGFAGPRPGGRWVNESSG--PSRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYE 112
R G P+ G + +S P + +RG+P+ A E V DF + V + I +
Sbjct: 149 RQGDVGMPKSGYQSRKDSHAFNPDDLYLFLRGIPYSATEDAVRDFLSGIRVDGVILIKHR 208
Query: 113 NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIEL 148
NG +G V FAT DA++ + + R M R+IE+
Sbjct: 209 NGLNNGNCLVKFATPGDALEGLKRHRQYMGQRFIEI 244
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRPV-VP---VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
+ ++GLP A D+ FF + +P VH+ G GEA + FAT EDA +AMS
Sbjct: 4 VIRLQGLPVVAGPADIRRFFLGLNIPDGGVHII-----GGEMGEAFIIFATDEDARRAMS 58
Query: 136 KDRTNMQHRYIELFLNSSS 154
++ IELFL+S +
Sbjct: 59 CSGGFIKDSRIELFLSSKA 77
>gi|17865825|ref|NP_524691.1| fusilli, isoform D [Drosophila melanogaster]
gi|24653906|ref|NP_725481.1| fusilli, isoform E [Drosophila melanogaster]
gi|24653908|ref|NP_725482.1| fusilli, isoform F [Drosophila melanogaster]
gi|75021514|sp|Q9BJZ5.1|FUSIL_DROME RecName: Full=RNA-binding protein fusilli
gi|13183640|gb|AAK15280.1|AF321979_1 fusilli [Drosophila melanogaster]
gi|21645395|gb|AAM70981.1| fusilli, isoform D [Drosophila melanogaster]
gi|21645396|gb|AAM70982.1| fusilli, isoform E [Drosophila melanogaster]
gi|21645397|gb|AAM70983.1| fusilli, isoform F [Drosophila melanogaster]
Length = 967
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRP--VVPVHVD--------IHYENGRPSGEADVDFAT 126
++ + MRGLP+ A + V DFF P HV + +GR +G+A V FA
Sbjct: 378 AQVIIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAN 437
Query: 127 HEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
DA +A+ + R ++ RYIELF ++++ V
Sbjct: 438 ETDAPKALGRHRESIGQRYIELFRSTTAEVQQV 470
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 14/89 (15%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVA----DFFRPVVP--VHVDIHYENGRPSGEADVDFAT 126
+SG +++ + +RGLP+ A + DF + ++ VH+ I+ + G+PSGEA +
Sbjct: 540 TSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQ-GQPSGEAFIQMDL 598
Query: 127 HEDAMQAMSKDRTN------MQHRYIELF 149
E A + ++ R N ++RYIE+F
Sbjct: 599 EESA-RLCAQRRHNHYMMFGKKYRYIEVF 626
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V RGLP++++++D+A FFR + V + + GR +GEA + F E A
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLS---PLGRRNGEALIRFVCQEHRDMA 336
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGS 164
+ + + ++ RYIE++ S + G S
Sbjct: 337 LKRHKHHIGTRYIEVYRASGEDFLAIAGGAS 367
>gi|326917887|ref|XP_003205226.1| PREDICTED: RNA-binding protein 12B-like [Meleagris gallopavo]
Length = 671
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 32 PGPIRGGPPRGGF--------RGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHT-VH 82
P RG PP F R F N++ + P G P P N S G R +
Sbjct: 544 PKDFRGPPPLMDFGGDSKPFGRMEFGNNKMGNFPEGRFMPDP-----NFSGGSDRIVPIR 598
Query: 83 MRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSK 136
++ LPF+A ++ DFF V+P V + Y E G PSG+A V +E+AM A+++
Sbjct: 599 LKNLPFKATPNEILDFFYGYRVIPESVSVQYNEQGLPSGDAIVAMTNYEEAMTAINE 655
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 56 RPGGFAGPRPGGRWVNESSG--PSRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYE 112
R G P+ G + +S P + +RG+P+ A E V DF + V + I +
Sbjct: 149 RQGDVGMPKSGYQSRKDSHAFNPDDLYLFLRGIPYSATEDAVRDFLSGIRVDGVILIKHR 208
Query: 113 NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIEL 148
NG +G V FAT DA++ + + R M R+IE+
Sbjct: 209 NGLNNGNCLVKFATPGDALEGLKRHRQYMGQRFIEI 244
Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRPV-VP---VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
+ ++GLP A D+ FF + +P VH+ G GEA + FAT EDA +AMS
Sbjct: 4 VIRLQGLPVVAGPADIRRFFLGLNIPDGGVHI-----IGGEIGEAFIIFATDEDARRAMS 58
Query: 136 KDRTNMQHRYIELFLNSSS 154
++ IELFL+S +
Sbjct: 59 CSGGFIKDSRIELFLSSKA 77
>gi|348572536|ref|XP_003472048.1| PREDICTED: epithelial splicing regulatory protein 2 [Cavia
porcellus]
Length = 719
Score = 50.1 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 352 LRLRGLPFSAGPTDVLSFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 411
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 412 RRHKGMLGKRYIELFRSTAA 431
Score = 41.2 bits (95), Expect = 0.34, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FFR + + GR +GEA + F E A
Sbjct: 247 SETVVRARGLPWQSSDQDVARFFRGLNIARGGVALCLNAQGRRNGEALIRFTDREQRDLA 306
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 307 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 338
Score = 37.0 bits (84), Expect = 6.6, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
++G R V +RGLP+ A D+ F VH+ ++ + GR SG+A + +
Sbjct: 461 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIQPHGVHMVLN-QQGRLSGDAFIQMTS 519
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++ G S
Sbjct: 520 AERALAAAQRCHKKMMKERYVEVVPCSTEEMSRVLMGGTLSRSGMS 565
>gi|213511062|ref|NP_001133976.1| probable RNA-binding protein 19 [Salmo salar]
gi|209156026|gb|ACI34245.1| Probable RNA-binding protein 19 [Salmo salar]
Length = 912
Score = 50.1 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 64 RPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVD-IHYENGRPSGEADV 122
+PG + E+ TV +RG PF E+ V +F P+ P + I G +G V
Sbjct: 266 KPGKQ--QETEPTPEFTVKLRGCPFNVKEQQVREFMTPLKPAAIRIIKNATGNKTGYIYV 323
Query: 123 DFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
D + E+ +A+ K++ M RYIE+F S G
Sbjct: 324 DMRSEEEVEKALKKNKDYMGGRYIEVFRTSVKGEG 358
>gi|226487870|emb|CAX75600.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 278
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 74 SGPSR--HTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYEN-GRPSGEADVDFATHE 128
S P+R H V +RGLP+ ++++ FF + P + + ++ GR +GEA V F + E
Sbjct: 95 SSPNRREHVVRLRGLPYDTEKKEIYAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSE 154
Query: 129 DAMQAMSKDRTNMQHRYIELF 149
+A K + HRYIE+F
Sbjct: 155 SLARAKEKHMEKIGHRYIEIF 175
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPV--HVDIHYE---NGRPSGEADVDFATHEDAMQAM 134
V +RGLPF AN D+ +FF+ I++ NGR +GEA ++ + +D +AM
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQGPNGRSNGEAFIELDSKDDKEKAM 63
Query: 135 SKDRTNMQHRYIELFLNSSSPRGGVGGS 162
+ +M RYIE+F + S GS
Sbjct: 64 AHHNEHMGRRYIEVFDSCSEELNNAMGS 91
>gi|194756410|ref|XP_001960472.1| GF13378 [Drosophila ananassae]
gi|190621770|gb|EDV37294.1| GF13378 [Drosophila ananassae]
Length = 885
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 81 VHMRGLPFRANERDVADFFRP--VVPVHV--------DIHYENGRPSGEADVDFATHEDA 130
+ MRGLP+ + V DFF P HV + +GR +G+A V FA DA
Sbjct: 385 IRMRGLPYDCTAKQVLDFFTTGDTAPCHVLDGNEGVLFVKKPDGRATGDAFVLFAHESDA 444
Query: 131 MQAMSKDRTNMQHRYIELFLNSSS 154
+A+ + R ++ RYIELF ++++
Sbjct: 445 AKALGRHRESIGQRYIELFRSTTA 468
Score = 40.4 bits (93), Expect = 0.66, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
V RGLP++++++D+A FFR + + GR +GEA + F + E A+ +
Sbjct: 284 VRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFISQEHRDMALKRH 343
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGS 164
+ ++ RYIE++ S + G S
Sbjct: 344 KHHIGTRYIEVYRASGEDFLAIAGGAS 370
>gi|410562529|pdb|2LXU|A Chain A, Solution Nmr Structure Of The Eukaryotic Rna Recognition
Motif, Rrm1, From The Heterogeneous Nuclear
Ribonucleoprotein H From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8614a
Length = 108
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH-----VDIHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 9 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 68
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 69 KKDRETMGHRYVEVF 83
>gi|108743797|gb|ABG02207.1| IP16182p [Drosophila melanogaster]
Length = 694
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRP--VVPVHVD--------IHYENGRPSGEADVDFATHED 129
+ MRGLP+ A + V DFF P HV + +GR +G+A V FA D
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 440
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSS 154
A +A+ + R ++ RYIELF ++++
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTA 465
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 14/89 (15%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVA----DFFRPVVP--VHVDIHYENGRPSGEADVDFAT 126
+SG +++ + +RGLP+ A + DF + ++ VH+ I+ + G+PSGEA +
Sbjct: 540 TSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQ-GQPSGEAFIQMDL 598
Query: 127 HEDAMQAMSKDRTN------MQHRYIELF 149
E A + ++ R N ++RYIE+F
Sbjct: 599 EESA-RLCAQRRHNHYMMFGKKYRYIEVF 626
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH--VDIHYE-NGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FFR + V + GR +GEA + F E A+ +
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 137 DRTNMQHRYIELFLNSSSPRGGVGGSGS 164
+ ++ RYIE++ S + G S
Sbjct: 340 HKHHIGTRYIEVYRASGEDFLAIAGGAS 367
>gi|291390369|ref|XP_002711679.1| PREDICTED: epithelial splicing regulatory protein 2-like
[Oryctolagus cuniculus]
Length = 719
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 352 LRLRGLPFSAGPTDVLSFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 411
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 412 RRHKGMLGKRYIELFRSTAA 431
Score = 42.4 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHE 128
G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + + E
Sbjct: 463 GTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTSAE 521
Query: 129 DAMQAMSKDRTN-MQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
A+ A + M+ RY+E+ S+ V G++G G S
Sbjct: 522 RALAAAQRSHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 565
Score = 39.3 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 247 SETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 306
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 307 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 338
>gi|38707995|ref|NP_944597.1| probable RNA-binding protein 19 [Danio rerio]
gi|32450902|gb|AAP82506.1| nil per os [Danio rerio]
Length = 926
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMS 135
+ TV +RG PF E+ V +F P+ PV + +GR SG VD + + +A+
Sbjct: 287 TEFTVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALR 346
Query: 136 KDRTNMQHRYIELF 149
D+ M RYIE+F
Sbjct: 347 LDKDYMGGRYIEVF 360
>gi|60416093|gb|AAH90711.1| Rbm19 protein, partial [Danio rerio]
Length = 802
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMS 135
+ TV +RG PF E+ V +F P+ PV + +GR SG VD + + +A+
Sbjct: 288 TEFTVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALR 347
Query: 136 KDRTNMQHRYIELF 149
D+ M RYIE+F
Sbjct: 348 LDKDYMGGRYIEVF 361
>gi|49619013|gb|AAT68091.1| KIAA0682-like [Danio rerio]
Length = 927
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMS 135
+ TV +RG PF E+ V +F P+ PV + +GR SG VD + + +A+
Sbjct: 288 TEFTVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALR 347
Query: 136 KDRTNMQHRYIELF 149
D+ M RYIE+F
Sbjct: 348 LDKDYMGGRYIEVF 361
>gi|426382629|ref|XP_004057906.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Gorilla gorilla gorilla]
Length = 717
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 459 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 518 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
Score = 39.7 bits (91), Expect = 0.95, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 245 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 304
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 305 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 336
>gi|71121745|gb|AAH99792.1| Hnrph1 protein [Rattus norvegicus]
Length = 184
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH-----VDIHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|297699056|ref|XP_002826613.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Pongo abelii]
Length = 717
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 459 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 518 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
Score = 39.7 bits (91), Expect = 0.95, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 245 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 304
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 305 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 336
>gi|114663263|ref|XP_511052.2| PREDICTED: epithelial splicing regulatory protein 2 isoform 2 [Pan
troglodytes]
Length = 717
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 459 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 518 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
Score = 39.7 bits (91), Expect = 0.94, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 245 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 304
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 305 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 336
>gi|190337757|gb|AAI63877.1| RNA binding motif protein 19 [Danio rerio]
Length = 926
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMS 135
+ TV +RG PF E+ V +F P+ PV + +GR SG VD + + +A+
Sbjct: 287 TEFTVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALR 346
Query: 136 KDRTNMQHRYIELF 149
D+ M RYIE+F
Sbjct: 347 LDKDYMGGRYIEVF 360
>gi|426382631|ref|XP_004057907.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Gorilla gorilla gorilla]
Length = 727
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 360 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 419
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 420 RRHKGMLGKRYIELFRSTAA 439
Score = 42.4 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 469 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 527
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 528 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 573
Score = 39.7 bits (91), Expect = 0.95, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 255 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 314
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 315 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 346
>gi|397487054|ref|XP_003814628.1| PREDICTED: epithelial splicing regulatory protein 2, partial [Pan
paniscus]
Length = 713
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 346 LRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 405
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 406 RRHKGMLGKRYIELFRSTAA 425
Score = 42.4 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 455 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 513
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 514 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 559
Score = 39.7 bits (91), Expect = 0.95, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 241 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 300
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 301 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 332
>gi|297699054|ref|XP_002826612.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Pongo abelii]
Length = 727
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 360 LRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 419
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 420 RRHKGMLGKRYIELFRSTAA 439
Score = 42.4 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 469 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 527
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 528 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 573
Score = 39.7 bits (91), Expect = 0.95, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 255 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 314
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 315 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 346
>gi|28849887|ref|NP_789808.1| epithelial splicing regulatory protein 2 [Mus musculus]
gi|81914552|sp|Q8K0G8.1|ESRP2_MOUSE RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|21618665|gb|AAH31444.1| RNA binding motif protein 35b [Mus musculus]
gi|148679398|gb|EDL11345.1| RNA binding motif protein 35b [Mus musculus]
Length = 717
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 40.0 bits (92), Expect = 0.74, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 459 AGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMMS 517
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGV--GGSGSIGGF 168
E A+ A + + M+ RY+E+ S+ V GGS S G
Sbjct: 518 VERALAAAQRCHKKMMKERYVEVVPCSTEEMSRVLMGGSLSRSGL 562
Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
V RGLP++++++DVA FF+ + + GR +GEA + F E A+ +
Sbjct: 249 VRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ +M RYIE++ + + G S+
Sbjct: 309 KHHMGVRYIEVYKATGEEFVKIAGGTSL 336
>gi|114663265|ref|XP_001167050.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1 [Pan
troglodytes]
Length = 727
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 360 LRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 419
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 420 RRHKGMLGKRYIELFRSTAA 439
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 469 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 527
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 528 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 573
Score = 39.7 bits (91), Expect = 0.97, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 255 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 314
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 315 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 346
>gi|45935393|ref|NP_079215.2| epithelial splicing regulatory protein 2 [Homo sapiens]
gi|20988380|gb|AAH30146.1| Epithelial splicing regulatory protein 2 [Homo sapiens]
gi|119603622|gb|EAW83216.1| RNA binding motif protein 35B, isoform CRA_c [Homo sapiens]
Length = 717
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 459 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 518 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
Score = 39.7 bits (91), Expect = 0.95, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 245 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 304
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 305 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 336
>gi|402908823|ref|XP_003917134.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Papio anubis]
Length = 725
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 358 LRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 417
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 418 RRHKGMLGKRYIELFRSTAA 437
Score = 40.8 bits (94), Expect = 0.48, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 467 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 525
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ + + M+ RY+E+ S+ V G++G G S
Sbjct: 526 AERALATAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 571
Score = 39.7 bits (91), Expect = 0.91, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 253 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 312
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 313 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 344
>gi|402908821|ref|XP_003917133.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Papio anubis]
Length = 715
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 348 LRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 407
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 408 RRHKGMLGKRYIELFRSTAA 427
Score = 40.8 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 457 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 515
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ + + M+ RY+E+ S+ V G++G G S
Sbjct: 516 AERALATAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 561
Score = 39.7 bits (91), Expect = 0.95, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 243 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 302
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 303 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 334
>gi|344253993|gb|EGW10097.1| Epithelial splicing regulatory protein 2 [Cricetulus griseus]
Length = 697
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A
Sbjct: 329 ILRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEEQAQAA 388
Query: 134 MSKDRTNMQHRYIELFLNSSS 154
+ + + + RYIELF ++++
Sbjct: 389 LRRHKGMLGKRYIELFRSTAA 409
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHE 128
G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + + E
Sbjct: 441 GTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMMSSE 499
Query: 129 DAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
A+ A + + M+ RY+E+ S+ V GS+ G S
Sbjct: 500 RALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGSLSRSGMS 543
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V RGLP++++++DVA FF+ + V + ++ GR +GEA + F E A
Sbjct: 228 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLN---AQGRRNGEALIRFEDSEQRDLA 284
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 285 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 316
>gi|109128999|ref|XP_001098015.1| PREDICTED: epithelial splicing regulatory protein 2-like isoform 1
[Macaca mulatta]
Length = 715
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 348 LRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 407
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 408 RRHKGMLGKRYIELFRSTAA 427
Score = 40.8 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 457 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 515
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ + + M+ RY+E+ S+ V G++G G S
Sbjct: 516 AERALATAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 561
Score = 39.7 bits (91), Expect = 0.95, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 243 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 302
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 303 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 334
>gi|440905418|gb|ELR55795.1| Epithelial splicing regulatory protein 2, partial [Bos grunniens
mutus]
Length = 759
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A
Sbjct: 391 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 450
Query: 134 MSKDRTNMQHRYIELFLNSSS 154
+ + + + RYIELF ++++
Sbjct: 451 LRRHKGMLGKRYIELFRSTAA 471
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
++G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 501 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLN-QQGRPSGDAFIQMTS 559
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 560 AERALAAAQRCHKKAMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 605
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 55 DRPGGFAGPRPGGRWVNESSGP--------SRHTVHMRGLPFRANERDVADFFRPV---- 102
+ P G +P G +GP S V RGLP++++++DVA FF+ +
Sbjct: 250 ESPSGQLFVKPEGVKQKYETGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNIAR 309
Query: 103 --VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
V + ++ GR +GEA + F E A+ + + +M RYIE++
Sbjct: 310 GGVALCLN---AQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVY 355
>gi|74761482|sp|Q9H6T0.1|ESRP2_HUMAN RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|10438126|dbj|BAB15173.1| unnamed protein product [Homo sapiens]
gi|119603620|gb|EAW83214.1| RNA binding motif protein 35B, isoform CRA_a [Homo sapiens]
Length = 727
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 360 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 419
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 420 RRHKGMLGKRYIELFRSTAA 439
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 469 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 527
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 528 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 573
Score = 39.7 bits (91), Expect = 0.99, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 255 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 314
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 315 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 346
>gi|403290547|ref|XP_003936375.1| PREDICTED: epithelial splicing regulatory protein 2 [Saimiri
boliviensis boliviensis]
Length = 715
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 348 LRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 407
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 408 RRHKGMLGKRYIELFRSTAA 427
Score = 43.1 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
++G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 457 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 515
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 516 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 561
Score = 39.7 bits (91), Expect = 0.99, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 243 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 302
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 303 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 334
>gi|281427346|ref|NP_001163962.1| RNA binding motif protein 19 [Xenopus (Silurana) tropicalis]
gi|189442184|gb|AAI67335.1| Unknown (protein for MGC:135501) [Xenopus (Silurana) tropicalis]
Length = 542
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMS 135
+ +TV +RG PF E++V +F P+ PV + I G +G VD + E+ +A+
Sbjct: 277 TSYTVKLRGAPFNVTEQNVREFLVPLKPVAIRIARNTYGNKTGYVFVDLNSEEEVQKALK 336
Query: 136 KDRTNMQHRYIELF 149
+++ M RYIE+F
Sbjct: 337 RNKDYMGGRYIEVF 350
>gi|256090135|ref|XP_002581069.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353232933|emb|CCD80288.1| putative heterogeneous nuclear ribonucleoprotein (hnrnp)
[Schistosoma mansoni]
Length = 338
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYEN-GRPSGEADVDFATHED 129
SS H V +RGLP+ ++++ FF + P + + ++ GR +GEA V F + E
Sbjct: 96 SSNRREHVVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSES 155
Query: 130 AMQAMSKDRTNMQHRYIELFLNS 152
+A K + HRYIE+F ++
Sbjct: 156 LARAKEKHMEKIGHRYIEIFEST 178
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRP--VVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAM 134
V +RGLPF AN D+ FF + I++ NGR +GEA ++ + +D +AM
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQGSNGRSNGEAFIELESKDDKQKAM 63
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ ++ RYIE+F + S
Sbjct: 64 AHHNQHLGRRYIEVFDSCSE 83
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 53 WNDRPGGFAGPRP---------GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVV 103
+N P GF GP P G ++ + H+V MRGLP+ A + D+ F P+
Sbjct: 262 YNSPPRGFEGPSPSKGSNFGPPGHYEYDDPQSSTGHSVRMRGLPYSATKEDIDRFLSPLQ 321
Query: 104 PVHVDIHY 111
PV++ + +
Sbjct: 322 PVNIRMRF 329
>gi|224046497|ref|XP_002200032.1| PREDICTED: RNA-binding protein 12B isoform 1 [Taeniopygia guttata]
gi|449494411|ref|XP_004175301.1| PREDICTED: RNA-binding protein 12B isoform 2 [Taeniopygia guttata]
Length = 699
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 32 PGPIRGGPPRGGF--------RGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHT-VH 82
P RG PP F R F N++ + P G P P N S G R +
Sbjct: 572 PKDFRGPPPLMDFGGDSEPCGRMEFGNNKMGNFPEGRFMPDP-----NFSGGSERVVPIL 626
Query: 83 MRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSK 136
++ LPF+A ++ DFF V+P V + Y E G PSG+A V +E+AM A+++
Sbjct: 627 LKNLPFKATPNEILDFFYGYRVIPESVSVQYNEQGLPSGDAIVAMTNYEEAMAAINE 683
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAM 134
P + +RG+P+ A E +V F + V + I + NG +G+ + AT DA++ +
Sbjct: 171 PDDRYLFLRGIPYSATEVEVRAFLSGIRVDGVILIKHRNGLNNGDCLIKCATPSDALEGL 230
Query: 135 SKDRTNMQHRYIEL 148
+ R M R+IE+
Sbjct: 231 KRHRQYMGQRFIEI 244
>gi|444709335|gb|ELW50356.1| Epithelial splicing regulatory protein 2 [Tupaia chinensis]
Length = 848
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A
Sbjct: 480 ILRLRGLPFSAGPTDVLGFLGPDCPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 539
Query: 134 MSKDRTNMQHRYIELFLNSSS 154
+ + + + RYIELF ++++
Sbjct: 540 LRRHKGMLGKRYIELFRSTAA 560
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
++G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 590 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 648
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 649 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 694
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDA 130
S V RGLP++++++DVA FFR + V + ++ GR +GEA + F E
Sbjct: 376 SETVVRARGLPWQSSDQDVARFFRGLNIARGGVALCLN---AQGRRNGEALIRFVDSEQR 432
Query: 131 MQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A+ + + +M RYIE++ + + G S+
Sbjct: 433 DLALQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 467
>gi|297284292|ref|XP_002802581.1| PREDICTED: epithelial splicing regulatory protein 2-like isoform 2
[Macaca mulatta]
Length = 725
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 358 LRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 417
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 418 RRHKGMLGKRYIELFRSTAA 437
Score = 40.8 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 467 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 525
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ + + M+ RY+E+ S+ V G++G G S
Sbjct: 526 AERALATAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 571
Score = 39.7 bits (91), Expect = 0.97, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 253 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 312
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 313 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 344
>gi|345495521|ref|XP_001604031.2| PREDICTED: RNA-binding protein fusilli-like [Nasonia vitripennis]
Length = 817
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 81 VHMRGLPFRANERDVADFF----RPVVPVHVD-----IHYENGRPSGEADVDFATHEDAM 131
V MRGLP+ + V +FF +P + + + +GR +G+A V FA EDA
Sbjct: 353 VRMRGLPYDCTAKQVLEFFLTGQKPCQVLDGEDGVLFVKKADGRATGDAFVLFAQEEDAA 412
Query: 132 QAMSKDRTNMQHRYIELFLNSSS 154
+A+SK R + RYIELF ++++
Sbjct: 413 KALSKHRDCIGSRYIELFRSTTA 435
Score = 43.5 bits (101), Expect = 0.074, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FFR + + GR +GEA V F + E A
Sbjct: 248 SNCVVRARGLPWQSSDQDVAKFFRGLNVAKGGVALCLSAQGRRNGEALVRFVSKEHRDMA 307
Query: 134 MSKDRTNMQHRYIELF 149
+ + + ++ RYIE++
Sbjct: 308 LKRHKHHIDQRYIEVY 323
>gi|237839439|ref|XP_002369017.1| RRM domain-containing protein [Toxoplasma gondii ME49]
gi|211966681|gb|EEB01877.1| RRM domain-containing protein [Toxoplasma gondii ME49]
Length = 513
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 61 AGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFR-----PVVPVHVDIHYENGR 115
AGP G +++ S + +RGLP+ ANE+ + FF ++P + I +GR
Sbjct: 399 AGPHHGSM---DTANWSAQVLRLRGLPYSANEQHIVQFFHGFHMAAILPSTIPI---DGR 452
Query: 116 PSGEADVDFATHEDAMQAM-SKDRTNMQHRYIELFLNSSS 154
PSGEA V F +A++A +K+ M R IELF +S
Sbjct: 453 PSGEAYVQFVDAAEALRAFQAKNGGRMDKRMIELFPSSKQ 492
>gi|354484335|ref|XP_003504344.1| PREDICTED: epithelial splicing regulatory protein 2 [Cricetulus
griseus]
Length = 707
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A
Sbjct: 339 ILRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEEQAQAA 398
Query: 134 MSKDRTNMQHRYIELFLNSSS 154
+ + + + RYIELF ++++
Sbjct: 399 LRRHKGMLGKRYIELFRSTAA 419
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHE 128
G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + + E
Sbjct: 451 GTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMMSSE 509
Query: 129 DAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
A+ A + + M+ RY+E+ S+ V GS+ G S
Sbjct: 510 RALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGSLSRSGMS 553
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V RGLP++++++DVA FF+ + V + ++ GR +GEA + F E A
Sbjct: 238 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLN---AQGRRNGEALIRFEDSEQRDLA 294
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 295 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 326
>gi|422294318|gb|EKU21618.1| rna binding protein [Nannochloropsis gaditana CCMP526]
Length = 302
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQA-MS 135
+ MRGLPF+ DVA +F V P V I +GRP+GEA V F T EDA+ A +
Sbjct: 89 VLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREA 148
Query: 136 KDRTNMQHRYIELFLNS 152
++ M +R+I+L+L S
Sbjct: 149 LNKQTMNNRWIDLYLAS 165
>gi|184185561|gb|ACC68959.1| RNA-binding protein 12 (predicted) [Rhinolophus ferrumequinum]
Length = 946
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+S+
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALSRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAVENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|149412787|ref|XP_001509129.1| PREDICTED: RNA-binding protein 12B-like [Ornithorhynchus anatinus]
Length = 692
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 17/108 (15%)
Query: 36 RGGPPRGGFRGGFNNDRWNDRPGGFAGPRPGGRWV---NESSGPSRHT-VHMRGLPFRAN 91
R G P G F G PGGF P GR++ N S GP R T + +R LPF+A
Sbjct: 579 REGEPFGRFEFG------KTHPGGF----PEGRFLPDPNFSGGPGRITPIKIRNLPFKAT 628
Query: 92 ERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSK 136
++ DFF V+P V I E G PSG+A V +++A+ A+ +
Sbjct: 629 VNEILDFFHGYRVIPESVSIQLNEQGLPSGDAIVAMTDYDEAVAAVDE 676
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRPV-VP---VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
+ ++GLP A D+ FF + +P VH+ G GEA + FAT EDA +AMS
Sbjct: 4 VIRLQGLPVVAGPVDIRHFFSGLNIPDGGVHI-----IGGEIGEAFIIFATDEDARRAMS 58
Query: 136 KDRTNMQHRYIELFLNSSS 154
++ IELFL+S +
Sbjct: 59 CSGGFIKDSLIELFLSSKT 77
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + G+P+ E +V FF + V + + + NGR +G+ V FAT DA+ + + R
Sbjct: 165 LFLHGMPYSVTEGEVHAFFSGLRVDGVILLKHHNGRNNGDGFVKFATSHDALGGLQRHRH 224
Query: 140 NMQHRYIEL 148
M R++E+
Sbjct: 225 YMGPRFVEI 233
>gi|383853070|ref|XP_003702047.1| PREDICTED: uncharacterized protein LOC100882770 [Megachile
rotundata]
Length = 886
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 60 FAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRP 116
FA + + + S V MRGLPF+ +RD+ DFF + V IH ++G+P
Sbjct: 633 FAQAKRDHEQASMNQTASSDCVIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLLNQSGKP 692
Query: 117 SGEADVDFATHEDAMQAMSKD 137
+GE +F T ++A++A +K+
Sbjct: 693 AGECFCEFDTTDEALRATAKN 713
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ L + AN D+ FFR + +H G G+A + F+T EDA QAM D
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIVGGE-LGDAFIAFSTDEDARQAMMHDGG 62
Query: 140 NMQHRYIELFLNSSSPRGGVGGSG-----SIGGFGGSGGGRLGGFGGSDPSSPFERRNPN 194
++ I+L L+S + V + S+ F S + P SP +RR+
Sbjct: 63 KIKEMKIKLLLSSRTEMQKVIEAARQQTLSLQSFMQSTPVAVAAV-VQKPGSPSDRRDKE 121
Query: 195 Q 195
+
Sbjct: 122 K 122
>gi|126322103|ref|XP_001368765.1| PREDICTED: RNA-binding protein 12B-like [Monodelphis domestica]
Length = 745
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 14/113 (12%)
Query: 31 GPGPIRG-GPPRGGFRGGFNNDRWNDRPGGFAGPRPGGRWV---NESSGPSRHT-VHMRG 85
GP P GPP G G F D N+ GGF P GR++ N + G R T + +
Sbjct: 622 GPRPFMNFGPPEGEPFGRF--DFGNNNMGGF----PEGRFMPDPNFNCGSGRVTPIKIMN 675
Query: 86 LPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
LPF+AN ++ DFF V+P V I Y E G P GEA V +++AM A++
Sbjct: 676 LPFKANVNEILDFFHGYGVIPESVSIQYNEQGLPLGEAIVAMVNYDEAMAAIN 728
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 59 GFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH--VDIHYENGRP 116
G GPR R + + +RGLP+ A E +V FF P + V + + + GR
Sbjct: 151 GITGPRKETRTFKSDN----RYLFLRGLPYSATEDEVRAFF-PGLCVDGIILLKHPTGRN 205
Query: 117 SGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+G+ V FAT DA+ + + R M R++E+ S GGS I
Sbjct: 206 NGDCLVKFATSHDALGGLQRHRHYMGSRFVEVSPASEQQWIDCGGSADI 254
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRPV-VP---VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
+ ++GLP A D+ FF + +P VH+ G GEA + FAT EDA +AMS
Sbjct: 4 VIRLQGLPVIAGPVDIRHFFSGLNIPDGGVHI-----IGGEIGEAFIIFATDEDARRAMS 58
Query: 136 KDRTNMQHRYIELFLNSSS 154
+ ++ +ELFL+S +
Sbjct: 59 RSGGFIKDSPVELFLSSKT 77
>gi|296478109|tpg|DAA20224.1| TPA: fusilli-like [Bos taurus]
Length = 717
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFF-------RPVVPVHVDIHYENGRPSGEADVDFA 125
++G R V +RGLP+ A D+ F RP VH+ ++ + GRPSG+A +
Sbjct: 459 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAVDIRP-HGVHMVLN-QQGRPSGDAFIQMT 516
Query: 126 THEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
+ E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 517 SAERALAAAQRCHKKAMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 55 DRPGGFAGPRPGGRWVNESSGP--------SRHTVHMRGLPFRANERDVADFFRPVVPVH 106
+ P G +P G +GP S V RGLP++++++DVA FF+ +
Sbjct: 215 ESPSGQLFVKPEGVKQKYETGPCSKADVVDSETVVWARGLPWQSSDQDVARFFKGLNIAR 274
Query: 107 VDIHY---ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSG 163
+ GR +GEA + F E A+ + + +M RYIE++ + + G
Sbjct: 275 GGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIAGGT 334
Query: 164 SI 165
S+
Sbjct: 335 SL 336
>gi|401395936|ref|XP_003879715.1| putative RRM domain-containing protein [Neospora caninum Liverpool]
gi|325114122|emb|CBZ49680.1| putative RRM domain-containing protein [Neospora caninum Liverpool]
Length = 246
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 13/82 (15%)
Query: 80 TVHMRGLPFRANERDVADFF---------RPVVPVHVDIHYENGRPSGEADVDFATHEDA 130
T+ +RGL +RA D+A FF + +H + +GRP+G A V F T ++A
Sbjct: 140 TLRLRGLSYRATTDDIAQFFEGYSLAGPPEEAIQLHRRM---DGRPTGWASVYFETEQEA 196
Query: 131 MQA-MSKDRTNMQHRYIELFLN 151
+A K R+ + RYIE+F+N
Sbjct: 197 RRAKQDKHRSYLHGRYIEIFIN 218
>gi|329664166|ref|NP_001192614.1| epithelial splicing regulatory protein 2 [Bos taurus]
Length = 717
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFF-------RPVVPVHVDIHYENGRPSGEADVDFA 125
++G R V +RGLP+ A D+ F RP VH+ ++ + GRPSG+A +
Sbjct: 459 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAVDIRP-HGVHMVLN-QQGRPSGDAFIQMT 516
Query: 126 THEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
+ E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 517 SAERALAAAQRCHKKAMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
Score = 39.7 bits (91), Expect = 0.90, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 55 DRPGGFAGPRPGGRWVNESSGP--------SRHTVHMRGLPFRANERDVADFFRPVVPVH 106
+ P G +P G +GP S V RGLP++++++DVA FF+ +
Sbjct: 215 ESPSGQLFVKPEGVKQKYETGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNIAR 274
Query: 107 VDIHY---ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSG 163
+ GR +GEA + F E A+ + + +M RYIE++ + + G
Sbjct: 275 GGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIAGGT 334
Query: 164 SI 165
S+
Sbjct: 335 SL 336
>gi|194208736|ref|XP_001498922.2| PREDICTED: epithelial splicing regulatory protein 2-like [Equus
caballus]
Length = 659
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A
Sbjct: 291 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 350
Query: 134 MSKDRTNMQHRYIELFLNSSS 154
+ + + + RYIELF ++++
Sbjct: 351 LRRHKGMLGKRYIELFRSTAA 371
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFF----RPVVP--VHVDIHYENGRPSGEADVDFAT 126
++G R V +RGLP+ A D+ F + P VH+ ++ + GRPSG+A + +
Sbjct: 401 AAGTERDCVRLRGLPYTATIEDILSFLGEAAADIQPHGVHMVLN-QQGRPSGDAFIQMTS 459
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 460 AERALGAAQRCHKKVMKERYVEVVPCSTDEMSRVLMGGTLGRSGMS 505
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDA 130
S V RGLP++++++DVA FF+ + V + ++ GR +GEA + F E
Sbjct: 187 SETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLN---AQGRRNGEALIRFVDSEQR 243
Query: 131 MQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A+ + + +M RYIE++ + + G S+
Sbjct: 244 DLALQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 278
>gi|326437182|gb|EGD82752.1| hypothetical protein PTSG_03403 [Salpingoeca sp. ATCC 50818]
Length = 1027
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSK 136
T ++GLPFR E+ V +FF P+ VDI + R G A VDFAT D A+ K
Sbjct: 397 TAKLQGLPFRCTEQQVREFFSPLSV--VDIRFLLDRRKRGKGVAFVDFATKRDYKAALKK 454
Query: 137 DRTNMQHRYIELF 149
R + R++E+
Sbjct: 455 HRQTLGPRFVEVL 467
>gi|313244026|emb|CBY14896.1| unnamed protein product [Oikopleura dioica]
Length = 407
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKDR 138
V M GLP+R ++ +FF P+ V I ++GR +G A F + +D AM K++
Sbjct: 266 IVKMSGLPYRITRGEIREFFSPIDLTDVRIEIGKDGRTTGNAFAAFFSDDDVWNAMQKNK 325
Query: 139 TNMQHRYIELFLNSS 153
+ RY+EL+ S+
Sbjct: 326 QMLGTRYVELYNKSA 340
>gi|195381217|ref|XP_002049351.1| GJ21539 [Drosophila virilis]
gi|194144148|gb|EDW60544.1| GJ21539 [Drosophila virilis]
Length = 982
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRP-VVPVHVD--------IHYENGRPSGEADVDFATHEDA 130
+ MRGLP+ + V DFF P HV + +GR +G+A V FA D+
Sbjct: 381 IIRMRGLPYDCTPKQVLDFFTTGEAPCHVLDGNEGVLFVKKPDGRATGDAFVLFANESDS 440
Query: 131 MQAMSKDRTNMQHRYIELFLNSSS 154
+A+ + R ++ RYIELF ++++
Sbjct: 441 SKALGRHRESIGQRYIELFRSTTA 464
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V RGLP++++++D+A FFR + V + + GR +GEA + F + E A
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLS---PLGRRNGEALIRFVSQEHRDMA 336
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGS 164
+ + + ++ RYIE++ S + G S
Sbjct: 337 LKRHKHHIGSRYIEVYRASGEDFLAIAGGAS 367
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 14/89 (15%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVA----DFFRPVVP--VHVDIHYENGRPSGEADVDFAT 126
+SG +++ + +RGLP+ A + DF + ++ VH+ I+ + G+PSGEA + +
Sbjct: 537 TSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQ-GQPSGEAFIQMDS 595
Query: 127 HEDAMQAMSKDRTNM------QHRYIELF 149
ED+ + ++ + N + RYIE+F
Sbjct: 596 -EDSARLCAQRKHNQFMVFGKKFRYIEVF 623
>gi|226487872|emb|CAX75601.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 153
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPV--HVDIHYE---NGRPSGEADVDFATHEDAMQAM 134
V +RGLPF AN D+ +FF+ I++ NGR +GEA ++ + +D +AM
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQGPNGRSNGEAFIELDSKDDKEKAM 63
Query: 135 SKDRTNMQHRYIELFLNSSSPRGGVGGS 162
+ +M RYIE+F + S GS
Sbjct: 64 AHHNEHMGRRYIEVFDSCSEELNNAMGS 91
>gi|410983809|ref|XP_003998229.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Felis catus]
Length = 726
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A
Sbjct: 358 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 417
Query: 134 MSKDRTNMQHRYIELFLNSSS 154
+ + + + RYIELF ++++
Sbjct: 418 LRRHKGILGKRYIELFRSTAA 438
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
++G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 468 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 526
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 527 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGLS 572
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDA 130
S V RGLP++++++DVA FF+ + V + ++ GR +GEA + F E
Sbjct: 254 SETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLN---AQGRRNGEALIRFVDSEQR 310
Query: 131 MQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A+ + + +M RYIE++ + + G S+
Sbjct: 311 DLALQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 345
>gi|73957227|ref|XP_851504.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Canis lupus familiaris]
Length = 717
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 410 RRHKGILGKRYIELFRSTAA 429
Score = 42.4 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
++G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 459 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 518 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 245 SETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 304
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 305 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 336
>gi|148233440|ref|NP_001079497.1| uncharacterized protein LOC379184 [Xenopus laevis]
gi|27694912|gb|AAH43858.1| MGC53694 protein [Xenopus laevis]
gi|80477878|gb|AAI08882.1| MGC53694 protein [Xenopus laevis]
Length = 658
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 8/97 (8%)
Query: 63 PRPGGRWVNESSGPSRHT----VHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRP 116
PRP + NE + P + V + GLP+ A+E DV +FF V ++ + +NG
Sbjct: 133 PRPKYQG-NEGTMPLKENGYGYVFLNGLPYTADEHDVKEFFHGFDVEDINFCVR-QNGDK 190
Query: 117 SGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
G+A V FAT +DA ++S+ + + HRYI L L++
Sbjct: 191 DGKAYVKFATFQDAKASLSRHKEYIGHRYIFLKLSNE 227
>gi|355686618|gb|AER98119.1| epithelial splicing regulatory protein 2 [Mustela putorius furo]
Length = 650
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A
Sbjct: 283 ILRLRGLPFSAGPEDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 342
Query: 134 MSKDRTNMQHRYIELFLNSSS 154
+ + + + RYIELF ++++
Sbjct: 343 LRRHKGILGKRYIELFRSTAA 363
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
++G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 393 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 451
Query: 127 HEDAMQAMS-KDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + M+ RY+E+ S+ V G++ G S
Sbjct: 452 AERALAAAQGCHKKVMKERYVEVVPCSTEEMSRVLMGGTLSRSGMS 497
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDA 130
S V RGLP++++++DVA FF+ + V + ++ GR +GEA + F E
Sbjct: 179 SETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLN---AQGRRNGEALIRFVDSEQR 235
Query: 131 MQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A+ + + +M RYIE++ + + G S+
Sbjct: 236 DLALQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 270
>gi|198415693|ref|XP_002128145.1| PREDICTED: similar to RNA binding motif protein 19 [Ciona
intestinalis]
Length = 766
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIH-YENGRPSGEADVDFATHEDAMQAMSKDR 138
+V MRG PF E+ + +FF P+ +++ ++G +G V F T ED A+ +
Sbjct: 144 SVKMRGCPFNIKEKQIREFFFPITVKSLNVQKTDHGSRTGFVYVHFKTEEDREAALKHNG 203
Query: 139 TNMQHRYIELFLNSSSPRGGVGG 161
++ RYIELF ++ G G
Sbjct: 204 DYIKGRYIELFKQLAAKHQGKQG 226
>gi|355756893|gb|EHH60501.1| hypothetical protein EGM_11873, partial [Macaca fascicularis]
Length = 635
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A
Sbjct: 267 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 326
Query: 134 MSKDRTNMQHRYIELFLNSSS 154
+ + + + RYIELF ++++
Sbjct: 327 LRRHKGMLGKRYIELFRSTAA 347
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHE 128
G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + + E
Sbjct: 379 GTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTSAE 437
Query: 129 DAM-QAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
A+ A + M+ RY+E+ S+ V G++G G S
Sbjct: 438 RALATAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 481
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDA 130
S V RGLP++++++DVA FF+ + V + ++ GR +GEA + F E
Sbjct: 163 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLN---AQGRRNGEALIRFVDSEQR 219
Query: 131 MQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A+ + + +M RYIE++ + + G S+
Sbjct: 220 DLALQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 254
>gi|301775691|ref|XP_002923260.1| PREDICTED: epithelial splicing regulatory protein 2-like
[Ailuropoda melanoleuca]
gi|281349933|gb|EFB25517.1| hypothetical protein PANDA_012380 [Ailuropoda melanoleuca]
Length = 723
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 356 LRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 415
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 416 RRHKGILGKRYIELFRSTAA 435
Score = 42.4 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
++G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 465 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 523
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 524 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 569
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 251 SETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 310
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 311 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 342
>gi|355710319|gb|EHH31783.1| hypothetical protein EGK_12921, partial [Macaca mulatta]
Length = 688
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A
Sbjct: 320 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 379
Query: 134 MSKDRTNMQHRYIELFLNSSS 154
+ + + + RYIELF ++++
Sbjct: 380 LRRHKGMLGKRYIELFRSTAA 400
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHE 128
G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + + E
Sbjct: 432 GTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTSAE 490
Query: 129 DAM-QAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
A+ A + M+ RY+E+ S+ V G++G G S
Sbjct: 491 RALATAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 534
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDA 130
S V RGLP++++++DVA FF+ + V + ++ GR +GEA + F E
Sbjct: 216 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLN---AQGRRNGEALIRFVDSEQR 272
Query: 131 MQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A+ + + +M RYIE++ + + G S+
Sbjct: 273 DLALQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 307
>gi|344246677|gb|EGW02781.1| RNA-binding protein 12 [Cricetulus griseus]
Length = 997
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMS 135
+ V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+
Sbjct: 430 YCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALC 489
Query: 136 KDRTNMQHRYIEL 148
+ + M +R+I++
Sbjct: 490 RHKQYMGNRFIQV 502
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV +FF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|426242551|ref|XP_004015136.1| PREDICTED: epithelial splicing regulatory protein 2 [Ovis aries]
Length = 591
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A
Sbjct: 223 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 282
Query: 134 MSKDRTNMQHRYIELFLNSSS 154
+ + + + RYIELF ++++
Sbjct: 283 LRRHKGMLGKRYIELFRSTAA 303
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
++G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 333 AAGSGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 391
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 392 AERALAAAQRCHKKAMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 437
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDA 130
S V RGLP++++++DVA FF+ + V + ++ GR +GEA + F E
Sbjct: 119 SETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLN---AQGRRNGEALIRFVDSEQR 175
Query: 131 MQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A+ + + +M RYIE++ + + G S+
Sbjct: 176 DLALQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 210
>gi|410983807|ref|XP_003998228.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Felis catus]
Length = 717
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 410 RRHKGILGKRYIELFRSTAA 429
Score = 42.0 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
++G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 459 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 518 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGLS 563
Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 245 SETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 304
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 305 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 336
>gi|47226530|emb|CAG08546.1| unnamed protein product [Tetraodon nigroviridis]
Length = 944
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDA 130
E+ + TV +RG+PF E+ + +F P+ P + I ++G +G VD + E
Sbjct: 298 ETEPATGFTVKLRGVPFNVKEQQIREFMTPLKPAAIRIGKNDSGNRTGYVYVDLHSEEQV 357
Query: 131 MQAMSKDRTNMQHRYIELF 149
+A+ K++ + RYIE+F
Sbjct: 358 EKALKKNKDYIGGRYIEVF 376
>gi|395853861|ref|XP_003799417.1| PREDICTED: epithelial splicing regulatory protein 2 [Otolemur
garnettii]
Length = 715
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 348 LRLRGLPFSAGPPDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 407
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIE+F ++++
Sbjct: 408 RRHKGMLGKRYIEIFRSTAA 427
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFF-------RPVVPVHVDIHYENGRPSGEADVDFA 125
++G R V +RGLP+ A D+ F RP VH+ ++ + GRPSG+A +
Sbjct: 457 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAVDIRP-HGVHMVLN-QQGRPSGDAFIQMT 514
Query: 126 THEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
+ E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 515 SAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLIGGTLGRSGMS 561
Score = 40.4 bits (93), Expect = 0.59, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 243 SETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 302
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G SI
Sbjct: 303 LQRHKHHMGIRYIEVYKATGEEFVKIAGGTSI 334
>gi|301609834|ref|XP_002934460.1| PREDICTED: RNA-binding protein 12B-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 659
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDR 138
V + GLP+ A E DV +FF VV +H + +NG G A V F + +DA A+S+D
Sbjct: 159 VFLYGLPYTAGELDVKEFFHGFNVVDLHFSVR-QNGVRDGNAYVKFGSVQDAQAALSRDN 217
Query: 139 TNMQHRYIELFLNSSSPRGGVGG 161
+ HRYI + L + GG
Sbjct: 218 EYIGHRYICVKLCNEQKWIEAGG 240
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRPV-VP---VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
+ ++GLP A D+ FF + +P VH+ G GEA + FAT EDA +AMS
Sbjct: 4 VIRLQGLPVVAGSTDIRHFFSGLHIPDGGVHI-----TGGKIGEAFIIFATDEDARRAMS 58
Query: 136 KDRTNMQHRYIELFLNSSS 154
+ ++ IELFL+S +
Sbjct: 59 RSGGFIKKSRIELFLSSKA 77
>gi|395505306|ref|XP_003756983.1| PREDICTED: RNA-binding protein 12 [Sarcophilus harrisii]
Length = 1415
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F + D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRSESDYKAALCR 490
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMETDVKDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFFSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ ++R M RY+E ++ ++ R V G I
Sbjct: 360 LKRNRMLMIQRYVE--VSPATERQWVAAGGHI 389
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATH 127
S P + ++ +PF + ++ DFF V+P V + Y E G P+GEA V F +
Sbjct: 795 TTSGKPGPTVIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 854
Query: 128 EDAMQAM 134
++AM A+
Sbjct: 855 DEAMAAV 861
>gi|344279911|ref|XP_003411729.1| PREDICTED: RNA-binding protein 12-like isoform 1 [Loxodonta
africana]
Length = 936
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 65 PGGRWVNESSGPSR--HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGE 119
P G+ + S P V+++GLPF A + V DFF+ + V I+ NG+ +GE
Sbjct: 414 PSGQKRSRSRSPQEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGE 473
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIEL 148
V+F D A+ + + M +R+I++
Sbjct: 474 GFVEFRNEADYKAALCRHKQYMGNRFIQV 502
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDA 130
S P V + G+PF A E DV DFF V VH+ + GR +G V F + +D
Sbjct: 298 SINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDT 356
Query: 131 MQAMSKDRTNMQHRYIEL 148
+A+ ++R M RY+E+
Sbjct: 357 FEALKRNRMLMIQRYVEV 374
>gi|301609832|ref|XP_002934459.1| PREDICTED: RNA-binding protein 12B-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 683
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDR 138
V + GLP+ A E DV +FF VV +H + +NG G A V F + +DA A+S+D
Sbjct: 183 VFLYGLPYTAGELDVKEFFHGFNVVDLHFSVR-QNGVRDGNAYVKFGSVQDAQAALSRDN 241
Query: 139 TNMQHRYIELFLNSSSPRGGVGG 161
+ HRYI + L + GG
Sbjct: 242 EYIGHRYICVKLCNEQKWIEAGG 264
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRPV-VP---VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
+ ++GLP A D+ FF + +P VH+ G GEA + FAT EDA +AMS
Sbjct: 28 VIRLQGLPVVAGSTDIRHFFSGLHIPDGGVHI-----TGGKIGEAFIIFATDEDARRAMS 82
Query: 136 KDRTNMQHRYIELFLNSSS 154
+ ++ IELFL+S +
Sbjct: 83 RSGGFIKKSRIELFLSSKA 101
>gi|350594874|ref|XP_003483994.1| PREDICTED: RNA-binding protein 12 isoform 1 [Sus scrofa]
gi|350594876|ref|XP_003483995.1| PREDICTED: RNA-binding protein 12 isoform 2 [Sus scrofa]
gi|350594878|ref|XP_003483996.1| PREDICTED: RNA-binding protein 12 isoform 3 [Sus scrofa]
Length = 933
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV +FF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAVENDVREFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|449667958|ref|XP_002158900.2| PREDICTED: epithelial splicing regulatory protein 1-like [Hydra
magnipapillata]
Length = 503
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPV----HVDIHYENGRPSGEADVDFATHEDAMQA 133
+ MRGLPF A DV +FF P V + I Y +G +G+A V F T + A
Sbjct: 320 IIRMRGLPFDATVHDVVEFFGDSPKVLQGKNGVMLISYPDGASTGDAFVLFETEAEGQFA 379
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIG 166
+ K R N+ RY+ELF ++ + V +IG
Sbjct: 380 LKKHRENIGKRYVELFRSTRAELQQVLTMYNIG 412
>gi|197215644|gb|ACH53036.1| RNA binding motif protein 12, isoform 1 (predicted) [Otolemur
garnettii]
Length = 1475
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSATENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ ++R M RY+E ++ ++ R V G I
Sbjct: 360 LKRNRMLMIQRYVE--VSPATERQWVAAGGHI 389
>gi|50949507|emb|CAH10603.1| hypothetical protein [Homo sapiens]
Length = 954
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 453 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 512
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 513 HKQYMGNRFIQV 524
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 323 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 381
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 382 LKRNRMLMIQRYVEV 396
>gi|334311305|ref|XP_001381494.2| PREDICTED: RNA-binding protein 12 [Monodelphis domestica]
Length = 1413
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F + D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRSESDYKAALCR 490
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMETDVKDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFFSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ ++R M RY+E ++ ++ R V G I
Sbjct: 360 LKRNRMLMIQRYVE--VSPATERQWVAAGGHI 389
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATH 127
S P + ++ +PF + ++ DFF V+P V + Y E G P+GEA V F +
Sbjct: 795 TTSGKPGPTVIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 854
Query: 128 EDAMQAM 134
++AM A+
Sbjct: 855 DEAMAAV 861
>gi|344279913|ref|XP_003411730.1| PREDICTED: RNA-binding protein 12-like isoform 2 [Loxodonta
africana]
Length = 924
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 65 PGGRWVNESSGPSR--HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGE 119
P G+ + S P V+++GLPF A + V DFF+ + V I+ NG+ +GE
Sbjct: 414 PSGQKRSRSRSPQEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGE 473
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIEL 148
V+F D A+ + + M +R+I++
Sbjct: 474 GFVEFRNEADYKAALCRHKQYMGNRFIQV 502
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDA 130
S P V + G+PF A E DV DFF V VH+ + GR +G V F + +D
Sbjct: 298 SINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDT 356
Query: 131 MQAMSKDRTNMQHRYIEL 148
+A+ ++R M RY+E+
Sbjct: 357 FEALKRNRMLMIQRYVEV 374
>gi|426241394|ref|XP_004014576.1| PREDICTED: RNA-binding protein 12 isoform 1 [Ovis aries]
Length = 931
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|395830118|ref|XP_003788182.1| PREDICTED: RNA-binding protein 12 [Otolemur garnettii]
Length = 1478
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSATENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ ++R M RY+E ++ ++ R V G I
Sbjct: 360 LKRNRMLMIQRYVE--VSPATERQWVAAGGHI 389
>gi|312032395|ref|NP_001185821.1| RNA-binding protein 12 [Bos taurus]
Length = 953
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|194387896|dbj|BAG61361.1| unnamed protein product [Homo sapiens]
Length = 731
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 230 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 289
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 290 HKQYMGNRFIQV 301
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 100 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 158
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 159 LKRNRMLMIQRYVEV 173
>gi|20521648|dbj|BAA34485.2| KIAA0765 protein [Homo sapiens]
Length = 952
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 452 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 511
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 512 KQYMGNRFIQV 522
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 321 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 379
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 380 LKRNRMLMIQRYVEV 394
>gi|284519716|ref|NP_001165217.1| RNA-binding protein 12 [Equus caballus]
Length = 928
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|354477974|ref|XP_003501192.1| PREDICTED: RNA-binding protein 12 [Cricetulus griseus]
Length = 1463
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMS 135
+ V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+
Sbjct: 430 YCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALC 489
Query: 136 KDRTNMQHRYIEL 148
+ + M +R+I++
Sbjct: 490 RHKQYMGNRFIQV 502
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV +FF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ ++R M RY+E ++ ++ R V G I
Sbjct: 360 LKRNRMLMIQRYVE--VSPATERQWVAAGGHI 389
>gi|260797907|ref|XP_002593942.1| hypothetical protein BRAFLDRAFT_234856 [Branchiostoma floridae]
gi|229279174|gb|EEN49953.1| hypothetical protein BRAFLDRAFT_234856 [Branchiostoma floridae]
Length = 678
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
+ ++GLP+ A ++DV DFF+ + V I +E+G+ G V+F ++ D A+ +
Sbjct: 307 ISLKGLPYTAKDKDVRDFFKGLGIRKVWIDFEDGKAIGSGFVEFKSYGDQKAALRMHKKY 366
Query: 141 MQHRYIEL 148
M RYIE+
Sbjct: 367 MGSRYIEV 374
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYEN-GRPSGEADVDFATHED 129
++ P V ++ LP A ++ DFF PV+ V IH + G P+G A V F T +D
Sbjct: 596 TNEPLSDIVGIQNLPMTATMEEILDFFYGYPVLKDSVHIHRSDRGDPTGNASVAFPTPQD 655
Query: 130 AMQA 133
AM A
Sbjct: 656 AMIA 659
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++GLP+ A+ D+ FF + +H G +G+A + FA+ EDA QAM++
Sbjct: 4 VIRLQGLPWSASAMDIRSFFSGLTIPDGGVHIVGGD-AGDAFIIFASDEDARQAMARTGN 62
Query: 140 NMQHRYIELFLNS 152
+ I L+L+S
Sbjct: 63 TIHGSPITLYLSS 75
>gi|397502356|ref|XP_003821827.1| PREDICTED: epithelial splicing regulatory protein 1 [Pan paniscus]
Length = 268
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 35 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 93
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 94 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 128
>gi|284004917|ref|NP_001164804.1| RNA-binding protein 12 [Oryctolagus cuniculus]
gi|217038336|gb|ACJ76629.1| RNA binding motif protein 12 (predicted) [Oryctolagus cuniculus]
Length = 940
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 433 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 492
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 493 KQYMGNRFIQV 503
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|193786713|dbj|BAG52036.1| unnamed protein product [Homo sapiens]
Length = 568
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 67 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEVDYKAALCR 126
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 127 HKQYMGNRFIQV 138
>gi|426241396|ref|XP_004014577.1| PREDICTED: RNA-binding protein 12 isoform 2 [Ovis aries]
Length = 926
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|417413254|gb|JAA52964.1| Putative rna binding protein rbm12/swan, partial [Desmodus
rotundus]
Length = 960
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 453 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 512
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 513 HKQYMGNRFIQV 524
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 323 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 381
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 382 LKRNRMLMIQRYVEV 396
>gi|74136241|ref|NP_001028012.1| RNA-binding protein 12 [Macaca mulatta]
gi|30173333|sp|Q8SQ27.1|RBM12_MACMU RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12; AltName: Full=SH3/WW domain anchor
protein in the nucleus; Short=SWAN
gi|19070196|gb|AAL83753.1| SWAN [Macaca mulatta]
gi|355563178|gb|EHH19740.1| RNA-binding motif protein 12 [Macaca mulatta]
gi|355784534|gb|EHH65385.1| RNA-binding motif protein 12 [Macaca fascicularis]
gi|380808606|gb|AFE76178.1| RNA-binding protein 12 [Macaca mulatta]
gi|380808608|gb|AFE76179.1| RNA-binding protein 12 [Macaca mulatta]
gi|384944626|gb|AFI35918.1| RNA-binding protein 12 [Macaca mulatta]
gi|384944628|gb|AFI35919.1| RNA-binding protein 12 [Macaca mulatta]
Length = 932
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|19923345|ref|NP_006038.2| RNA-binding protein 12 [Homo sapiens]
gi|23510462|ref|NP_690051.1| RNA-binding protein 12 [Homo sapiens]
gi|311893287|ref|NP_001185767.1| RNA-binding protein 12 [Homo sapiens]
gi|312032348|ref|NP_001185769.1| RNA-binding protein 12 [Homo sapiens]
gi|353411938|ref|NP_001238775.1| RNA-binding protein 12 [Pan troglodytes]
gi|397523818|ref|XP_003831915.1| PREDICTED: RNA-binding protein 12 [Pan paniscus]
gi|30173387|sp|Q9NTZ6.1|RBM12_HUMAN RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12; AltName: Full=SH3/WW domain anchor
protein in the nucleus; Short=SWAN
gi|15215375|gb|AAH12787.1| RNA binding motif protein 12 [Homo sapiens]
gi|15559252|gb|AAH13981.1| RNA binding motif protein 12 [Homo sapiens]
gi|19070194|gb|AAL83752.1| SWAN [Homo sapiens]
gi|19070200|gb|AAL83755.1| SWAN [Homo sapiens]
gi|21666372|gb|AAM73682.1| swan [Homo sapiens]
gi|119596588|gb|EAW76182.1| hCG38213, isoform CRA_e [Homo sapiens]
gi|119596590|gb|EAW76184.1| hCG38213, isoform CRA_e [Homo sapiens]
gi|119596594|gb|EAW76188.1| hCG38213, isoform CRA_e [Homo sapiens]
gi|123993635|gb|ABM84419.1| RNA binding motif protein 12 [synthetic construct]
gi|123999855|gb|ABM87436.1| RNA binding motif protein 12 [synthetic construct]
gi|168278717|dbj|BAG11238.1| RNA binding motif protein 12 [synthetic construct]
gi|193787298|dbj|BAG52504.1| unnamed protein product [Homo sapiens]
gi|410216986|gb|JAA05712.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410216988|gb|JAA05713.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410260650|gb|JAA18291.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410260652|gb|JAA18292.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410297724|gb|JAA27462.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410297726|gb|JAA27463.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410355577|gb|JAA44392.1| RNA binding motif protein 12 [Pan troglodytes]
Length = 932
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|12053991|emb|CAC20441.1| RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|196003222|ref|XP_002111478.1| hypothetical protein TRIADDRAFT_13868 [Trichoplax adhaerens]
gi|190585377|gb|EDV25445.1| hypothetical protein TRIADDRAFT_13868, partial [Trichoplax
adhaerens]
Length = 302
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDF 124
+S R + +RGLPF A E D+ +F + +H+ I+ + GRPSG+A +
Sbjct: 211 QKSQESVRDCIRLRGLPFTATEPDITNFMGELADKIALNGIHLCIN-DRGRPSGDAYIQM 269
Query: 125 ATHEDAMQ-AMSKDRTNMQHRYIELF 149
+ EDA++ A K R ++ R+IE+F
Sbjct: 270 LSAEDAIKSAEKKHREHLGTRWIEVF 295
>gi|344290717|ref|XP_003417084.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 2-like [Loxodonta africana]
Length = 717
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPADVLAFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + RYIELF ++++
Sbjct: 410 RSXQGMLGKRYIELFRSTAA 429
Score = 42.4 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATH 127
+G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 460 AGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTSA 518
Query: 128 EDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 519 ERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S + RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 245 SETVIRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 304
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 305 LQRHKHHMGIRYIEVYKATGEEFVKIAGGTSL 336
>gi|197100361|ref|NP_001125474.1| RNA-binding protein 12 [Pongo abelii]
gi|75070796|sp|Q5RBM8.1|RBM12_PONAB RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12
gi|55728164|emb|CAH90832.1| hypothetical protein [Pongo abelii]
Length = 932
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|431894345|gb|ELK04145.1| RNA-binding protein 12 [Pteropus alecto]
Length = 899
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|56753603|gb|AAW25004.1| SJCHGC02919 protein [Schistosoma japonicum]
gi|226487876|emb|CAX75603.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 137
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPV--HVDIHYE---NGRPSGEADVDFATHEDAMQAM 134
V +RGLPF AN D+ +FF+ I++ NGR +GEA ++ + +D +AM
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQGPNGRSNGEAFIELDSKDDKEKAM 63
Query: 135 SKDRTNMQHRYIELFLNSSSPRGGVGGS 162
+ +M RYIE+F + S GS
Sbjct: 64 AHHNEHMGRRYIEVFDSCSEELNNAMGS 91
>gi|21740240|emb|CAD39131.1| hypothetical protein [Homo sapiens]
Length = 663
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 162 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 221
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 222 HKQYMGNRFIQV 233
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 32 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 90
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ ++R M RY+E ++ ++ R V G I
Sbjct: 91 LKRNRMLMIQRYVE--VSPATERQWVAAGGHI 120
>gi|428185555|gb|EKX54407.1| hypothetical protein GUITHDRAFT_99887 [Guillardia theta CCMP2712]
Length = 1076
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPV-------VPVHVDIHYENGRPSGEADVDFATHED 129
S + V RGLPF + E D+ FF V + +D RPSGEA V + ED
Sbjct: 686 SSYEVTCRGLPFSSTEDDIVTFFGECKNLEAGDVSILLDARQ---RPSGEATVKLRSVED 742
Query: 130 AMQAMSKDRTNMQHRYIELF 149
A+S +R M RY+E+F
Sbjct: 743 LHAALSCNRNMMGERYVEVF 762
>gi|328716236|ref|XP_001946855.2| PREDICTED: RNA-binding protein fusilli-like [Acyrthosiphon pisum]
Length = 858
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 65 PGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSG 118
PG W NE + V RGLP++++++D+A FFR + V + + H GR +G
Sbjct: 253 PGICWKNEEVD-NNCVVRARGLPWQSSDQDIAKFFRGLNIAKGGVALCLSAH---GRRNG 308
Query: 119 EADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGS 164
EA V F E AM + + ++ RYIE++ + V G S
Sbjct: 309 EAVVRFVNQEHRDMAMKRHKHHIGSRYIEVYKANGEDFINVAGGNS 354
Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 81 VHMRGLPFRANERDVADFFR------PVVPVHVDIHY---ENGRPSGEADVDFATHEDAM 131
V MRGLP+ +DV FF V+ + + +GR +G+A V FA +DA
Sbjct: 369 VRMRGLPYDCTAKDVITFFENGEQTCSVMDGEDGVLFVKKPDGRATGDAFVLFADEDDAP 428
Query: 132 QAMSKDRTNMQHRYIELFLNSSS 154
+A+SK R + RYIELF ++++
Sbjct: 429 KALSKHRDLIGTRYIELFRSTTA 451
Score = 37.4 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 12/128 (9%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFF----RPVVPVHVDIHYEN-GRPSGEADVDFATH 127
+SG + + +RGLP+ AN + +F + +V V + Y + G SGEA +
Sbjct: 508 TSGTRKDCIRLRGLPYEANVEHILEFLGEHSKNIVFQGVHMVYNSVGHASGEAFIQMNNE 567
Query: 128 EDAMQ-AMSKDRTNM----QHRYIELFLNSSSPRGGV--GGSGSIGGFGGSGGGRLGGFG 180
A Q AM+K M + RYIE+F S V GG + G L
Sbjct: 568 GSAAQAAMAKHHNYMSFGKKQRYIEVFQCSGEDMHLVLTGGGAASGALSPVAAKALLSPP 627
Query: 181 GSDPSSPF 188
G P+ P
Sbjct: 628 GMLPAQPL 635
>gi|332248953|ref|XP_003273629.1| PREDICTED: RNA-binding protein 12-like isoform 7 [Nomascus
leucogenys]
Length = 932
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|229368727|gb|ACQ63010.1| RNA binding motif protein 12, isoform 2 (predicted) [Dasypus
novemcinctus]
Length = 900
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV +FF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|395512126|ref|XP_003760295.1| PREDICTED: RNA-binding protein 12B [Sarcophilus harrisii]
Length = 745
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 14/113 (12%)
Query: 31 GPGPIRG-GPPRGGFRGGFNNDRWNDRPGGFAGPRPGGRWV---NESSGPSRHT-VHMRG 85
GP P GPP G G F D N+ GGF P GR++ N + G R T + +
Sbjct: 622 GPRPFMNFGPPEGEPFGRF--DFGNNNMGGF----PEGRFMSDPNFNCGSGRVTPIKIMN 675
Query: 86 LPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
LPF+AN ++ DFF V+P V I Y + G P GEA V +++AM A++
Sbjct: 676 LPFKANVNEILDFFHGYGVIPESVSIQYNDQGLPLGEAIVAMVNYDEAMAAIN 728
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 59 GFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH--VDIHYENGRP 116
G GPR R + + +RGLP+ A E +V FF P + V + + + GR
Sbjct: 151 GITGPRKETRTFKSDN----RYLFLRGLPYSATEDEVRAFF-PGLCVDGVILLKHPTGRN 205
Query: 117 SGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+G+ V FAT DA+ + + R M R++E+ S GGS I
Sbjct: 206 NGDCLVKFATSHDALGGLQRHRHYMGSRFVEVSPASEQQWIDCGGSVDI 254
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRPV-VP---VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
+ ++GLP A D+ FF + +P VH+ G GEA + FAT EDA +AMS
Sbjct: 4 VIRLQGLPVIAGPVDIRHFFSGLNIPDGGVHI-----IGGEIGEAFIIFATDEDARRAMS 58
Query: 136 KDRTNMQHRYIELFLNSSS 154
+ ++ +ELFL+S +
Sbjct: 59 RSGGFIKDSPVELFLSSKT 77
>gi|301762096|ref|XP_002916483.1| PREDICTED: RNA-binding protein 12-like [Ailuropoda melanoleuca]
gi|281346062|gb|EFB21646.1| hypothetical protein PANDA_004540 [Ailuropoda melanoleuca]
Length = 923
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|221129839|ref|XP_002156393.1| PREDICTED: epithelial splicing regulatory protein 2-like [Hydra
magnipapillata]
Length = 489
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAM-S 135
V +R LP+ ++ FFR PV+ V IHY E+GR SG+A + F DA A+ +
Sbjct: 414 AVGIRNLPYEVTPDEILQFFRNFPVIADSVRIHYLEDGRCSGDAIISFRGSRDARDAVQA 473
Query: 136 KDRTNMQHRYIELFL 150
+R N+ R +ELF
Sbjct: 474 LNRKNLGRRKVELFF 488
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 62 GPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-----GRP 116
G R + N R V + LP+ A E D+ DFFRPV+ + + G+P
Sbjct: 208 GDRGKNNYDNFDKINERKFVFIGELPYNATEVDIQDFFRPVLTRDIFLIRNKVGKYIGKP 267
Query: 117 SGEADVDFATHEDAMQAMSKD 137
+G A V+F + DA + + D
Sbjct: 268 NGNAVVEFFSESDAREVLKCD 288
>gi|348564119|ref|XP_003467853.1| PREDICTED: RNA-binding protein 12-like [Cavia porcellus]
Length = 1467
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAVENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|284520924|ref|NP_001165219.1| RNA-binding protein 12 [Canis lupus familiaris]
Length = 923
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|169731516|gb|ACA64888.1| RNA binding motif protein 12 (predicted) [Callicebus moloch]
Length = 1465
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ ++R M RY+E ++ ++ R V G I
Sbjct: 360 LKRNRMLMIQRYVE--VSPATERQWVAAGGHI 389
>gi|444729174|gb|ELW69601.1| RNA-binding protein 12 [Tupaia chinensis]
Length = 932
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|170047639|ref|XP_001851321.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167870002|gb|EDS33385.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 677
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVPVHVD-------IHYENGRPSGEADVDFATHEDA 130
+ MRGLP+ + V +FF +D + +GR +G+A V FA DA
Sbjct: 147 IIRMRGLPYDCTAKQVLEFFANGETSCTVLDGADGILFVKKPDGRATGDAFVLFAQESDA 206
Query: 131 MQAMSKDRTNMQHRYIELFLNSSS 154
+A+SK R ++ RYIELF ++++
Sbjct: 207 SKALSKHRESIGQRYIELFRSTTA 230
>gi|281182775|ref|NP_001162483.1| RNA-binding protein 12 [Papio anubis]
gi|164623749|gb|ABY64675.1| RNA binding motif protein 12 (predicted) [Papio anubis]
Length = 1466
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ ++R M RY+E ++ ++ R V G I
Sbjct: 360 LKRNRMLMIQRYVE--VSPATERQWVAAGGHI 389
>gi|402580371|gb|EJW74321.1| hypothetical protein WUBG_14771, partial [Wuchereria bancrofti]
Length = 57
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 98 FFRPVVPVHVDIHYENG--RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
FF+P+ P +D+ YE G RPSGEA V+F D AM ++R M RY+EL
Sbjct: 1 FFQPLRPASIDVLYEYGTDRPSGEAIVEFRNRADFDAAMQRNRNYMGSRYVELI 54
>gi|426391523|ref|XP_004062122.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12 [Gorilla
gorilla gorilla]
Length = 1474
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 439 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 498
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 499 HKQYMGNRFIQV 510
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 309 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 367
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ ++R M RY+E ++ ++ R V G I
Sbjct: 368 LKRNRMLMIQRYVE--VSPATERQWVAAGGHI 397
>gi|410953920|ref|XP_003983616.1| PREDICTED: RNA-binding protein 12-like isoform 1 [Felis catus]
Length = 1482
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ ++R M RY+E ++ ++ R V G I
Sbjct: 360 LKRNRMLMIQRYVE--VSPATERQWVAAGGHI 389
>gi|339253438|ref|XP_003371942.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967723|gb|EFV52113.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 505
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 80 TVHMRGLPFRANERDVADFFR------PVVPVHVDIHYEN---GRPSGEADVDFATHEDA 130
+ MRGLP+ + + +FF V I + N GR +G+A V A+ EDA
Sbjct: 51 IIRMRGLPYDCTAKRIMEFFESGENGVKVAGGESGIMFVNKADGRATGDAFVLIASEEDA 110
Query: 131 MQAMSKDRTNMQHRYIELFLNSSS 154
+A+SK + + RYIELF ++S+
Sbjct: 111 QKALSKHKEVIGSRYIELFRSTSA 134
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVD-IHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V +RGLPF DV FF+ + +D IH + NG+ +GEA + F + +A +A+ +
Sbjct: 428 VLLRGLPFNVTPTDVLSFFQGFPEITMDCIHLQRAPNGQLNGEAIILFQSRMEAERAVIE 487
Query: 137 -DRTNMQHRYIELFL 150
R +R IE+F+
Sbjct: 488 CSRQLFGNRPIEMFI 502
>gi|332248945|ref|XP_003273625.1| PREDICTED: RNA-binding protein 12-like isoform 3 [Nomascus
leucogenys]
Length = 1466
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ ++R M RY+E ++ ++ R V G I
Sbjct: 360 LKRNRMLMIQRYVE--VSPATERQWVAAGGHI 389
>gi|449284118|gb|EMC90699.1| RNA-binding protein 12B [Columba livia]
Length = 698
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVD----IHYENGRPSGEADVDFATHEDAM 131
P +++RG+P+ A E +V FF + HVD I + NG +G+ V FAT DA+
Sbjct: 171 PDDLYLYLRGIPYSATEDEVRAFFSGI---HVDGVILIKHRNGLSNGDCLVKFATPGDAL 227
Query: 132 QAMSKDRTNMQHRYIEL 148
+ + + R M R+IE+
Sbjct: 228 EGLQRHRQYMGQRFIEI 244
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 32 PGPIRGGPPRGGF--------RGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHM 83
P RG PP R F N++ P G P P +E P R +
Sbjct: 571 PEDFRGPPPLVDLGGDGEPFGRMEFGNNKMGSFPEGRFMPDPNFSGGSEHGVPIR----L 626
Query: 84 RGLPFRANERDVADFF--RPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSK 136
+ LPF+A ++ DFF V+P V + Y + G PSG+A + +E+AM A+++
Sbjct: 627 KNLPFKATPNEILDFFYGYRVIPESVCVQYNKQGLPSGDAIIAMTNYEEAMAAINE 682
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRPV-VP---VHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
+ ++GLP A D+ FF + +P VH+ G GEA + FAT EDA +AMS
Sbjct: 4 VIRLQGLPVVAGPADIRRFFLGLNIPDGGVHI-----IGGEIGEAFIIFATDEDARRAMS 58
Query: 136 KDRTNMQHRYIELFLNSSS 154
++ IELFL+S +
Sbjct: 59 CSGGFIKDSRIELFLSSKA 77
>gi|403281161|ref|XP_003932066.1| PREDICTED: RNA-binding protein 12 [Saimiri boliviensis boliviensis]
Length = 1465
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ ++R M RY+E ++ ++ R V G I
Sbjct: 360 LKRNRMLMIQRYVE--VSPATERQWVAAGGHI 389
>gi|226487874|emb|CAX75602.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 150
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 18/101 (17%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVPVHVDIHYE----------------NGRPSGEAD 121
V +RGLPF AN D+ +FF+ V V ++ + NGR +GEA
Sbjct: 4 VVRIRGLPFSANADDIINFFKGTLVFRVFFNVFTDCTIRGGKRGIYFPQGPNGRSNGEAF 63
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS 162
++ + +D +AM+ +M RYIE+F + S GS
Sbjct: 64 IELDSKDDKEKAMAHHNEHMGRRYIEVFDSCSEELNNAMGS 104
>gi|83320105|ref|NP_001032746.1| RNA-binding protein 12 [Rattus norvegicus]
gi|31324614|gb|AAP48569.1| swan [Rattus norvegicus]
gi|149030841|gb|EDL85868.1| rCG37481, isoform CRA_a [Rattus norvegicus]
gi|149030844|gb|EDL85871.1| rCG37481, isoform CRA_a [Rattus norvegicus]
Length = 1032
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV +FF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|26325168|dbj|BAC26338.1| unnamed protein product [Mus musculus]
Length = 841
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 275 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 334
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 335 HKQYMGNRFIQV 346
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV +FF V VH+ + GR +G V F + +D +A
Sbjct: 145 PDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 203
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 204 LKRNRMLMIQRYVEV 218
>gi|166831595|gb|ABY90120.1| RNA binding motif protein 12 (predicted) [Callithrix jacchus]
Length = 1460
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ ++R M RY+E ++ ++ R V G I
Sbjct: 360 LKRNRMLMIQRYVE--VSPATERQWVAAGGHI 389
>gi|270009942|gb|EFA06390.1| hypothetical protein TcasGA2_TC009268 [Tribolium castaneum]
Length = 751
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 81 VHMRGLPFRANERDVADFFRPV---------VPVHVDIHYENGRPSGEADVDFATHEDAM 131
V MRGLP+ + V DFF + + +GR +G+A V FA+ DA
Sbjct: 329 VRMRGLPYDCTAKQVLDFFASGENSCTVLDGTEGVLFVRKPDGRATGDAFVLFASESDAP 388
Query: 132 QAMSKDRTNMQHRYIELFLNSSS 154
+A+SK R + RYIELF ++++
Sbjct: 389 KALSKHRECIGSRYIELFRSTTA 411
Score = 40.4 bits (93), Expect = 0.61, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++D+A FF + + GR +GEA + F + E A
Sbjct: 224 SNCVVRARGLPWQSSDQDIAKFFSGLNVAKGGVALCLSAQGRRNGEALIKFESQEHRDMA 283
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGS 164
+ + + ++ RYIE++ S V G S
Sbjct: 284 LKRHKHHIGPRYIEVYRASGEDFLSVAGGKS 314
>gi|195171791|ref|XP_002026687.1| GL11864 [Drosophila persimilis]
gi|194111613|gb|EDW33656.1| GL11864 [Drosophila persimilis]
Length = 830
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRP-VVPVHVD--------IHYENGRPSGEADVDFATH 127
++ + MRGLP+ + V +FF P HV + +GR +G+A V FA
Sbjct: 397 AQVIIRMRGLPYDCTAKQVLEFFTTGEAPCHVLDASEGVLFVKKPDGRATGDAFVLFANE 456
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSS 154
DA +A+ + R ++ RYIELF ++++
Sbjct: 457 GDAPKALGRHRESIGQRYIELFRSTTA 483
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 14/100 (14%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVA----DFFRPVVP--VHVDIHYENGRPSGEADVDFAT 126
+SG +++ + +RGLP+ A + DF + ++ VH+ I+ + G+PSGEA + +
Sbjct: 493 TSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQ-GQPSGEAFIQMDS 551
Query: 127 HEDAMQAMSKDRTNM------QHRYIELFLNSSSPRGGVG 160
ED+ + ++ + N + RYIE+F S VG
Sbjct: 552 -EDSARLCAQRKHNQFMVFGKKFRYIEVFQCSGDDMNMVG 590
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V RGLP++++++D+A FFR + V + + GR +GEA + F + E A
Sbjct: 299 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLS---PLGRRNGEALIRFVSQEHRDMA 355
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGS 164
+ + + ++ RYIE++ S + G S
Sbjct: 356 LKRHKHHIGARYIEVYRASGEDFLAIAGGAS 386
>gi|190402267|gb|ACE77677.1| RNA binding motif protein 12, isoform 1 (predicted) [Sorex araneus]
Length = 1520
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 137 DRTNMQHRYIEL 148
+ M R+I++
Sbjct: 491 HKQYMGSRFIQV 502
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ ++R M RY+E ++ ++ R V G I
Sbjct: 360 LKRNRMLMIQRYVE--VSPATERQWVAAGGHI 389
>gi|296199717|ref|XP_002747276.1| PREDICTED: RNA-binding protein 12 isoform 1 [Callithrix jacchus]
Length = 1460
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ ++R M RY+E ++ ++ R V G I
Sbjct: 360 LKRNRMLMIQRYVE--VSPATERQWVAAGGHI 389
>gi|147907062|ref|NP_001079993.1| RNA binding motif protein 12 [Xenopus laevis]
gi|37589430|gb|AAH59291.1| Rbm12-prov protein [Xenopus laevis]
Length = 877
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 73 SSGPSRH--TVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATH 127
S P H V+++GLP+ A + V DFF+ + V I+ NG+ +GE ++F
Sbjct: 422 SRSPHEHGFCVYLKGLPYEAENKHVIDFFKKLNIVEDSIYIAYGSNGKATGEGFLEFRNE 481
Query: 128 EDAMQAMSKDRTNMQHRYIEL 148
ED A+ + + M +R++++
Sbjct: 482 EDYKSALCRHKQYMGNRFVQV 502
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 29 GSGPGPIRGGPPRGGFRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPF 88
GSGP I PP GF G N + PG AG + SGP+ + ++ +PF
Sbjct: 766 GSGPA-ILNAPP--GFGPG--NMAVSGPPGFVAG--------SAKSGPT--VIRVQNMPF 810
Query: 89 RANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAM 134
++ DFF ++P V + + + G P+GEA V F + ++AM A+
Sbjct: 811 TVTVDEILDFFYGYQLIPGSVCLKFSDKGMPTGEAMVAFESRDEAMAAV 859
>gi|19070198|gb|AAL83754.1| SWAN [Mus musculus]
gi|21666374|gb|AAM73683.1| swan [Mus musculus]
gi|21666376|gb|AAM73684.1| swan [Mus musculus]
Length = 1003
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV +FF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|148231978|ref|NP_001083138.1| RNA binding motif protein 12B [Xenopus laevis]
gi|37805207|gb|AAH60345.1| MGC68792 protein [Xenopus laevis]
Length = 654
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDR 138
V + GLP+ +E DV DFF VV VH + NG G A V FA+ +DA ++S+D
Sbjct: 159 VFLCGLPYSTSELDVKDFFHGFHVVDVHFSVR-SNGARDGNAYVKFASVQDAKASLSRDY 217
Query: 139 TNMQHRYIELFLNSSSPRGGVGG 161
+ HR I + L++ GG
Sbjct: 218 EYIGHRRIAVKLSTEHKWIEAGG 240
>gi|328717324|ref|XP_001952255.2| PREDICTED: hypothetical protein LOC100163028 [Acyrthosiphon pisum]
Length = 819
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHE 128
N S S + VH+RGLPF + D+ +FF+ ++P + I + G A V F E
Sbjct: 654 NGSKLDSDNCVHIRGLPFDFTKDDIVEFFQGLEMIPNGITISNSSAGRIG-AFVQFVNRE 712
Query: 129 DAMQAMSKDRTNMQHRYIELFLNS 152
+ +A+ K ++ RYIE+F +S
Sbjct: 713 NVEKALKKHMKKIRQRYIEVFRSS 736
Score = 40.4 bits (93), Expect = 0.59, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVD-----IHYE---NGRPSGEADVDFATHEDAMQ 132
V MRGL + A + F V +H+ GRP+G+A VD + E+
Sbjct: 564 VRMRGLSWSATTDAIIKFLSTSGEAKVKDGASRVHFTMTTEGRPNGQAYVDMESEENLKA 623
Query: 133 AMSKDRTNMQHRYIELFLNSSS 154
A+ +D M+ RYI +F ++ S
Sbjct: 624 ALKQDGEYMRDRYINVFPSNRS 645
>gi|74184867|dbj|BAE39056.1| unnamed protein product [Mus musculus]
Length = 914
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 353 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 412
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 413 HKQYMGNRFIQV 424
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV +FF V VH+ + GR +G V F + +D +A
Sbjct: 223 PDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 281
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 282 LKRNRMLMIQRYVEV 296
>gi|211830818|gb|AAH26891.2| Rbm12 protein [Mus musculus]
Length = 887
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 316 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 375
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 376 HKQYMGNRFIQV 387
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV +FF V VH+ + GR +G V F + +D +A
Sbjct: 186 PDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 244
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 245 LKRNRMLMIQRYVEV 259
>gi|114155120|ref|NP_083673.3| RNA-binding protein 12 [Mus musculus]
gi|114155125|ref|NP_733486.2| RNA-binding protein 12 [Mus musculus]
gi|262527571|sp|Q8R4X3.3|RBM12_MOUSE RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12; AltName: Full=SH3/WW domain anchor
protein in the nucleus; Short=SWAN
gi|26348755|dbj|BAC38017.1| unnamed protein product [Mus musculus]
gi|30851612|gb|AAH52473.1| RNA binding motif protein 12 [Mus musculus]
Length = 992
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV +FF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|26330362|dbj|BAC28911.1| unnamed protein product [Mus musculus]
Length = 992
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV +FF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|301606650|ref|XP_002932936.1| PREDICTED: RNA-binding protein 12 [Xenopus (Silurana) tropicalis]
Length = 880
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 73 SSGPSRH--TVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATH 127
S P H V+++GLP+ A + V DFF+ + V I+ NG+ +GE ++F
Sbjct: 425 SRSPHEHGFCVYLKGLPYEAENKHVIDFFKKLDIVEDSIYIAYGSNGKATGEGFLEFRNE 484
Query: 128 EDAMQAMSKDRTNMQHRYIEL 148
ED A+ + + M +R++++
Sbjct: 485 EDYKSALCRHKQYMGNRFVQV 505
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V + GLP +E D+ DFF + + V + GR +G A V T D +A+ ++R
Sbjct: 309 VCLHGLPVPVSEADIKDFFHGLRIDGIVVLKDPMGRHNGSALVKLITPHDTFEALKRNRM 368
Query: 140 NMQHRYIEL 148
+ R+IE+
Sbjct: 369 LLGQRFIEV 377
>gi|198461689|ref|XP_001362087.2| GA20896 [Drosophila pseudoobscura pseudoobscura]
gi|198137420|gb|EAL26667.2| GA20896 [Drosophila pseudoobscura pseudoobscura]
Length = 910
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRP-VVPVHVD--------IHYENGRPSGEADVDFATH 127
++ + MRGLP+ + V +FF P HV + +GR +G+A V FA
Sbjct: 397 AQVIIRMRGLPYDCTAKQVLEFFTTGEAPCHVLDANEGVLFVKKPDGRATGDAFVLFANE 456
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSS 154
DA +A+ + R ++ RYIELF ++++
Sbjct: 457 GDAPKALGRHRESIGQRYIELFRSTTA 483
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V RGLP++++++D+A FFR + V + + GR +GEA + F + E A
Sbjct: 299 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLS---PLGRRNGEALIRFVSQEHRDMA 355
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGS 164
+ + + ++ RYIE++ S + G S
Sbjct: 356 LKRHKHHIGARYIEVYRASGEDFLAIAGGAS 386
>gi|159485042|ref|XP_001700558.1| RNA binding protein [Chlamydomonas reinhardtii]
gi|158272198|gb|EDO98002.1| RNA binding protein [Chlamydomonas reinhardtii]
Length = 229
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 68 RWVNESSGPSRHTVHMRGLPFRANERDVADFF--RPVVPVHVD-IHYENGRPSGEADVDF 124
+ +E G + M+G+PF+A DV FF + P V I + +GRP+G A ++F
Sbjct: 145 KVFSEKFGDRYGVLKMKGIPFKATAMDVRKFFANYKIKPEGVSFIMHADGRPTGMAFIEF 204
Query: 125 ATHEDAMQAMSKDRTNMQHRY 145
T ++A++AM KDR Y
Sbjct: 205 ETPQEAVRAMEKDRAKFGPEY 225
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMSK 136
V M+GLPF+ ++ D+ FF + HV + + +GRP+GEA V F ++A +A K
Sbjct: 35 VVKMKGLPFKGSKEDIIKFFAGFSLRTEHVFLRKHPDGRPNGEAFVVFENSDEARRATQK 94
Query: 137 DRTNMQH----RYIELF--LNSSSP 155
DR RY+ ++ L+S P
Sbjct: 95 DRETFGEKFGDRYVRVYPTLDSDIP 119
>gi|84043632|ref|XP_951606.1| heterogeneous nuclear ribonucleoprotein H/F [Trypanosoma brucei
TREU927]
gi|33348520|gb|AAQ15845.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|62359177|gb|AAX79621.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
brucei]
Length = 487
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPV-VP---VHVDIHYENGRPSGEADVDFATHEDAM 131
PS V +RG+P+ A+E +A+FF V +P VH+ ++ E R +GEA V+ D +
Sbjct: 383 PSPFVVRIRGVPYSASEEAIAEFFAGVKIPPQGVHM-VYDERNRLTGEAFVEVEDRNDVL 441
Query: 132 QAMSKDRTNMQHRYIELFLNSSSPRGGVGGS 162
A+ ++ M RYIE+F +S + +G +
Sbjct: 442 LALDRNGAMMGTRYIEVFESSPAAMQRLGTA 472
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPV-HVDIHYE-NGRPSGEADVDFATHEDAMQAMSKD 137
+ +RGLPF A E DV F + V +DI + +GR +G+A ++ A+ ED +
Sbjct: 120 VLRLRGLPFAATEDDVRTFIESMEGVLSIDICRDMDGRNTGDAFIELASEEDVKRVKLLH 179
Query: 138 RTNMQHRYIELFLNSSSPRGGV 159
M +RYIE+ ++ R +
Sbjct: 180 SKAMGNRYIEVLPSTVYDRDAI 201
>gi|159163272|pdb|1WEL|A Chain A, Solution Structure Of Rna Binding Domain In Np_006038
Length = 124
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 27 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 86
Query: 137 DRTNMQHRYIEL 148
+ M +R+I++
Sbjct: 87 HKQYMGNRFIQV 98
>gi|321459051|gb|EFX70109.1| hypothetical protein DAPPUDRAFT_202511 [Daphnia pulex]
Length = 514
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 80 TVHMRGLPFRANERDVADFFRP----VVPVHVD-------IHYENGRPSGEADVDFATHE 128
V MRGLP+ + V +FF V +D + +GR +G+A V FAT E
Sbjct: 276 IVRMRGLPYDCTAKQVVEFFESGGEDVGSTVLDGDSGVLFVKKHDGRATGDAFVMFATEE 335
Query: 129 DAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
+ +A++K R + RYIELF ++++ V
Sbjct: 336 EGSKALAKHRDIIGSRYIELFRSTTAEVQQV 366
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFF----RPVVPVHVDIHYE-NGRPSGEADVDFATH 127
+SG + + +RGLP+ A + +F + +V V + Y G+PSGEA + +
Sbjct: 398 TSGTRKDCIRLRGLPYEAQVEHILEFLGEHAKSIVYQGVHMVYNAQGQPSGEAFIQMDSE 457
Query: 128 EDAMQAMSKDRTNM-----QHRYIELFLNS 152
+ + QA + + RYIE+F S
Sbjct: 458 QSSFQAAQQRHHRYMVFGKKQRYIEVFQCS 487
Score = 36.2 bits (82), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDA 130
S V RGLP++++++D+A FFR + V + + GR +GEA V F + E
Sbjct: 172 SNTVVRARGLPWQSSDQDIARFFRGLNVARGGVALCLS---PQGRRNGEALVRFISPEHR 228
Query: 131 MQAMSKDRTNMQHRYIELF 149
A+ + + ++ RYIE++
Sbjct: 229 DMALKRHKHHIGQRYIEVY 247
>gi|261326510|emb|CBH09471.1| heterogeneous nuclear ribonucleoprotein H/F,putative [Trypanosoma
brucei gambiense DAL972]
Length = 488
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPV-VP---VHVDIHYENGRPSGEADVDFATHEDAM 131
PS V +RG+P+ A+E +A+FF V +P VH+ ++ E R +GEA V+ D +
Sbjct: 384 PSPFVVRIRGVPYSASEEAIAEFFAGVKIPPQGVHM-VYDERNRLTGEAFVEVEDRNDVL 442
Query: 132 QAMSKDRTNMQHRYIELFLNSSSPRGGVGGS 162
A+ ++ M RYIE+F +S + +G +
Sbjct: 443 LALDRNGAMMGTRYIEVFESSPAAMQRLGTA 473
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPV-HVDIHYE-NGRPSGEADVDFATHEDAMQAMSKD 137
+ +RGLPF A E DV F + V +DI + +GR +G+A ++ A+ ED +
Sbjct: 121 VLRLRGLPFAATEDDVRTFIESMEGVLSIDICRDMDGRNTGDAFIELASEEDVKRVKLLH 180
Query: 138 RTNMQHRYIELFLNSSSPRGGV 159
M +RYIE+ ++ R +
Sbjct: 181 SKAMGNRYIEVLPSTVYDRDAI 202
>gi|149052455|gb|EDM04272.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_a [Rattus
norvegicus]
Length = 96
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD--------IHYENGRPSGEADVDFATHEDAM 131
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDC---KIQNGAQGIRFIYTREGRPSGEAFVELESEDEVK 68
Query: 132 QAMSKDRTNMQHRYIE 147
A+ KDR M HRY+E
Sbjct: 69 LALKKDRETMGHRYVE 84
>gi|351702538|gb|EHB05457.1| RNA-binding protein 12 [Heterocephalus glaber]
Length = 850
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAAENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEI 374
>gi|357144688|ref|XP_003573380.1| PREDICTED: uncharacterized protein LOC100836665 isoform 2
[Brachypodium distachyon]
Length = 557
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRP---VVPVHVDIHYENGRPSGEADVDFATH 127
N+S G T+ M LPF A V +FF VV V + H E+G P G A V+FAT
Sbjct: 284 NQSQGTGSKTLFMGNLPFSAEFGQVKEFFAEAGEVVDVRLATH-EDGHPKGYAHVEFATA 342
Query: 128 EDAMQAMSKDRTNMQHRYIELFL 150
EDA + + + + R + L L
Sbjct: 343 EDAKKGLELNGQELMGRAVRLDL 365
>gi|449265752|gb|EMC76898.1| RNA-binding protein 12, partial [Columba livia]
Length = 853
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 286 PDDLYVSIHGMPFSATESDVKDFFLGLRVDAVHM-LKDHVGRNNGNGLVKFFSPQDTFEA 344
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 345 LKRNRMLMIQRYVEV 359
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 65 PGGRWVNESSGPSRH--TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGE 119
P G+ + S P V+++GLPF + + V DFF+ + V I+ NG+ GE
Sbjct: 400 PSGQKRSRSRSPHEQGFCVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGE 459
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIEL 148
V+F D A+ + + +R+I++
Sbjct: 460 GFVEFRNEADYKAALCHHKQYIGNRFIQV 488
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHED 129
S P + ++ +PF + ++ DFF V+P V + Y E G P+GEA V F + ++
Sbjct: 783 SGKPGPTVIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 842
Query: 130 AMQAM 134
AM A+
Sbjct: 843 AMAAV 847
>gi|242017929|ref|XP_002429436.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212514368|gb|EEB16698.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 766
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 80 TVHMRGLPFRANERDVADFFRP----VVPVH------VDIHYENGRPSGEADVDFATHED 129
+ MRGLP+ V +FFR V + + +GR +G+A V F+ D
Sbjct: 296 IIRMRGLPYECTAEQVLEFFRTGENNTCEVLDGEDGVLFVKKSDGRATGDAFVLFSNESD 355
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSS 154
A +A+SK R + RYIELF ++++
Sbjct: 356 APKALSKHRERIGSRYIELFRSTTA 380
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFF----RPVVPVHVDIHY-ENGRPSGEADVDFATH 127
+SG S++ + +RGLP+ A + DF + +V V + Y +G+PSGEA + +
Sbjct: 419 TSGTSKNCIRLRGLPYEAQVEHILDFLGDYAKNIVFQGVHMVYNSHGQPSGEAFIQMDSE 478
Query: 128 EDAMQAMSKDRTNM-----QHRYIELFLNSSSPRGGVGGSGSIG 166
A A + + RY+E+F S + G +
Sbjct: 479 ASAFHAANHRHHQYMIFGKKQRYVEVFQCSGDDMNSILTGGQVS 522
>gi|444723044|gb|ELW63709.1| putative RNA-binding protein 19 [Tupaia chinensis]
Length = 1033
Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G VDF + E+
Sbjct: 331 NQREPTTPHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYVFVDFNSEEE 390
Query: 130 AMQAMSKDRTNMQ 142
+A+ +R M+
Sbjct: 391 VKKALKCNREYME 403
>gi|189238842|ref|XP_970801.2| PREDICTED: similar to fusilli CG8205-PD [Tribolium castaneum]
Length = 683
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 80 TVHMRGLPFRANERDVADFF---RPVVPVH------VDIHYENGRPSGEADVDFATHEDA 130
V MRGLP+ + V DFF V + + +GR +G+A V FA+ DA
Sbjct: 328 IVRMRGLPYDCTAKQVLDFFASGENSCTVLDGTEGVLFVRKPDGRATGDAFVLFASESDA 387
Query: 131 MQAMSKDRTNMQHRYIELFLNSSS 154
+A+SK R + RYIELF ++++
Sbjct: 388 PKALSKHRECIGSRYIELFRSTTA 411
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFF----RPVVPVHVDIHY-ENGRPSGEADVDFATH 127
+SG + + +RGLP+ A + +F + ++ V + Y G+PSGEA + +
Sbjct: 447 TSGTKKECIRLRGLPYEAQVEHILEFLGEYAKNIIFQGVHMVYNAQGQPSGEAFIQMDSE 506
Query: 128 EDA-MQAMSKDRTNM----QHRYIELFLNS 152
+ A + A K M + RYIE+F S
Sbjct: 507 QSACITAQQKHHRYMTFGKKQRYIEVFQCS 536
>gi|62648675|ref|XP_232819.3| PREDICTED: RNA-binding protein 12B-A-like [Rattus norvegicus]
gi|109476143|ref|XP_001053414.1| PREDICTED: RNA-binding protein 12B-A-like [Rattus norvegicus]
Length = 843
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ S GG
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTASKGG 243
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
V + LPF+AN ++ DFF V+P V I Y E G P GEA V + +A+ A+
Sbjct: 769 VMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVAMTNYNEALAAVK 826
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++GLPF A D+ FF+ + +H G+ +GEA + FAT EDA +A+S+
Sbjct: 4 VIRLQGLPFIAGPVDIRHFFKGLTIPDGGVHVIGGK-AGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSS 153
++ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
>gi|109476157|ref|XP_001054639.1| PREDICTED: RNA-binding protein 12B-A-like [Rattus norvegicus]
Length = 843
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ S GG
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTASKGG 243
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++GLPF A D+ FF+ + +H G+ +GEA + FAT EDA +A+S+
Sbjct: 4 VIRLQGLPFIAGPVDIRHFFKGLTIPDGGVHVIGGK-AGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSS 153
++ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
V + LPF+AN ++ DFF V+P V + Y E G P GEA V + +A+ A+
Sbjct: 769 VKISNLPFKANSNEILDFFHGYKVIPGSVSLQYNEQGLPIGEAIVAMTNYNEALAAVK 826
>gi|357144686|ref|XP_003573379.1| PREDICTED: uncharacterized protein LOC100836665 isoform 1
[Brachypodium distachyon]
Length = 606
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRP---VVPVHVDIHYENGRPSGEADVDFATH 127
N+S G T+ M LPF A V +FF VV V + H E+G P G A V+FAT
Sbjct: 333 NQSQGTGSKTLFMGNLPFSAEFGQVKEFFAEAGEVVDVRLATH-EDGHPKGYAHVEFATA 391
Query: 128 EDAMQAMSKDRTNMQHRYIELFL 150
EDA + + + + R + L L
Sbjct: 392 EDAKKGLELNGQELMGRAVRLDL 414
>gi|449486103|ref|XP_004175453.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12 [Taeniopygia
guttata]
Length = 1411
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFTATESDVKDFFLGLRVDAVHM-LKDHVGRNNGNGLVKFFSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ ++R M RY+E ++ ++ R V G I
Sbjct: 360 LKRNRMLMIQRYVE--VSPATERQWVAAGGHI 389
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 65 PGGRWVNESSGPSRH--TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGE 119
P G+ + S P H V+++GLPF + + V DFF+ + V I+ NG+ GE
Sbjct: 414 PTGQKRSRSRSPHEHGFCVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGE 473
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIEL 148
V+F D A+ + + +R+I++
Sbjct: 474 GFVEFRNEADYKAALCHHKQYIGNRFIQV 502
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHED 129
S P + ++ +PF + ++ DFF V+P V + Y E G P+GEA V F + ++
Sbjct: 797 SGKPGPTVIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 856
Query: 130 AMQAM 134
AM A+
Sbjct: 857 AMAAV 861
>gi|302852446|ref|XP_002957743.1| hypothetical protein VOLCADRAFT_84201 [Volvox carteri f.
nagariensis]
gi|300256919|gb|EFJ41175.1| hypothetical protein VOLCADRAFT_84201 [Volvox carteri f.
nagariensis]
Length = 241
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 81 VHMRGLPFRANERDVADFFRP-------VVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
+ +RGLPF A D+ FF + P V + + GRP+G A V F T ++A A
Sbjct: 146 LKLRGLPFAAVPDDIIAFFDDGTLGIPRLDPSRVHMWTDGGRPTGMALVQFNTPQEASIA 205
Query: 134 MSKDRTNMQHRYIELF 149
SKD+ M RY+E+F
Sbjct: 206 RSKDKGLMGTRYVEIF 221
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
V +RGLPF E D+ F + V + + +GR SGEA V + + A+SK R
Sbjct: 37 VRLRGLPFDVMEGDIK-MFLELETVDIVMVKRDGRFSGEALVVLGSLQLVEAALSKHRQF 95
Query: 141 MQHRYIELF 149
+ R+IE+F
Sbjct: 96 IGQRFIEIF 104
>gi|47211266|emb|CAF91568.1| unnamed protein product [Tetraodon nigroviridis]
Length = 823
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLP+ A+++ + +FF + + I+ NGR +GE ++F T +D A+
Sbjct: 361 CVYLKGLPYEADKKQIKEFFSNLAIIEDSIYIAYGPNGRATGEGFLEFKTEQDHKAALGA 420
Query: 137 DRTNMQHRYIEL 148
M R+I++
Sbjct: 421 HMQYMGSRFIQV 432
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 50 NDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHV 107
ND ++P A P ++GP+ V ++ +PF ++ DFF VVP V
Sbjct: 725 NDGLLNQPAATANPTS-----QCAAGPT--VVKLQNMPFTVTVDEIMDFFYGYQVVPGSV 777
Query: 108 DIHY-ENGRPSGEADVDFATHEDAMQAM 134
+ + E G P+GEA V F HE+A A+
Sbjct: 778 CLQFSEKGLPTGEAMVAFQNHEEATAAV 805
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVD----IHYENGRPSGEADVDFATHEDAMQAMSK 136
VH++ LPF E D+ FFR + VD + GR +G+A V F + +++ +A+ +
Sbjct: 230 VHLQNLPFTCTEMDIRHFFR---GLGVDGVRFLKDAQGRHTGKASVKFFSPQESFEAVKR 286
Query: 137 DRTNMQHRYIEL 148
M R+IE+
Sbjct: 287 GGGMMGQRFIEI 298
>gi|195124401|ref|XP_002006681.1| GI18454 [Drosophila mojavensis]
gi|193911749|gb|EDW10616.1| GI18454 [Drosophila mojavensis]
Length = 1008
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRP-VVPVHVD--------IHYENGRPSGEADVDFATHEDA 130
+ MRGLP+ + V +FF P HV + +GR +G+A V FA D+
Sbjct: 404 IIRMRGLPYDCTPKQVLEFFTTGESPCHVLDGSEGVLFVKKPDGRATGDAFVLFANESDS 463
Query: 131 MQAMSKDRTNMQHRYIELFLNSSS 154
+A+ + R ++ RYIELF ++++
Sbjct: 464 PKALGRHRESIGQRYIELFRSTTA 487
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V RGLP++++++D+A FFR + V + + GR +GEA + F + E A
Sbjct: 303 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLS---PLGRRNGEALIRFVSQEHRDMA 359
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGS 164
+ + + ++ RYIE++ S + G S
Sbjct: 360 LKRHKHHIGSRYIEVYRASGEDFLAIAGGAS 390
>gi|148674224|gb|EDL06171.1| mCG5227, isoform CRA_a [Mus musculus]
gi|148674225|gb|EDL06172.1| mCG5227, isoform CRA_a [Mus musculus]
Length = 773
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV +FF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
>gi|74095965|ref|NP_001027829.1| swan [Takifugu rubripes]
gi|31324616|gb|AAP48570.1| swan [Takifugu rubripes]
Length = 889
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
++++GLP+ A+++ + +FF + + I+ NGR +GE ++F T +D A+
Sbjct: 428 IYLKGLPYEADKKQIKEFFNNLAIIEDSIYIAYGPNGRATGEGFLEFKTEQDHKAALGAH 487
Query: 138 RTNMQHRYIEL 148
M R+I++
Sbjct: 488 MQYMGSRFIQV 498
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 50 NDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHV 107
ND +PGG P + ++GP+ V ++ +PF ++ DFF VVP V
Sbjct: 791 NDGLLSQPGG--TPNSNSQC---AAGPT--VVKLQNMPFTVTVDEIMDFFYGYQVVPGSV 843
Query: 108 DIHY-ENGRPSGEADVDFATHEDAMQAM 134
+ + E G P+GEA V F HE+A A+
Sbjct: 844 CLQFSEKGLPTGEAMVAFQNHEEATAAV 871
>gi|442746051|gb|JAA65185.1| Putative splicing factor hnrnp-f, partial [Ixodes ricinus]
Length = 141
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 80 TVHMRGLPFRANERDVADFFRP--------VVPVHVDIHYENGRPSGEADVDFATHEDAM 131
+ +RGLP+ + ++ +FF + VH+ + E GRPSGEA ++ + +D
Sbjct: 7 VLRIRGLPWSPTKEEILNFFTSKEVNIKGGISGVHMTLSRE-GRPSGEAYIELESEQDVE 65
Query: 132 QAMSKDRTNMQHRYIELFLNSSSPRGGV 159
+ + ++ HRYIE+F + S V
Sbjct: 66 VGLQRHNEHIGHRYIEVFKSKRSEMDWV 93
>gi|37360080|dbj|BAC98018.1| mKIAA0765 protein [Mus musculus]
Length = 569
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 343 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 402
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 403 KQYMGNRFIQV 413
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV +FF V VH+ + GR +G V F + +D +A
Sbjct: 212 PDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 270
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ ++R M RY+E ++ ++ R V G I
Sbjct: 271 LKRNRMLMIQRYVE--VSPATERQWVAAGGHI 300
>gi|194747277|ref|XP_001956079.1| GF25026 [Drosophila ananassae]
gi|190623361|gb|EDV38885.1| GF25026 [Drosophila ananassae]
Length = 1037
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ LP+ AN RD+ +FF + +H G G+A + F+T EDA AM KDR
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLAIPEGGVHIIGGE-MGDAFIAFSTDEDARCAMLKDRE 62
Query: 140 NMQHRYIELFLNSSSPRGGV 159
+ + L L+S + V
Sbjct: 63 KLMEIQVRLLLSSRAEMQKV 82
>gi|159486121|ref|XP_001701092.1| heterogeneous nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
gi|158271986|gb|EDO97794.1| heterogeneous nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
Length = 295
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
V +RGLPF E D+ F + PV + + +GR SGEA V + AM+K R
Sbjct: 29 CVRLRGLPFDVMEGDIKMFLE-LEPVDIVMVKRDGRFSGEAFVVVGNLQQVEAAMTKHRQ 87
Query: 140 NMQHRYIELF 149
+ R+IE+F
Sbjct: 88 FIGQRFIEIF 97
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 81 VHMRGLPFRANERDVADFFRP-------VVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
+ +RGLPF A D+ FF + P V + + GRP+G A V F T + A
Sbjct: 200 LKLRGLPFAAVPDDIIAFFDDPSLGIPRLDPSRVHMWTDGGRPTGMALVQFNTPAEVSMA 259
Query: 134 MSKDRTNMQHRYIELF 149
+KD+ M RY+E+F
Sbjct: 260 RAKDKQLMGTRYVEIF 275
>gi|49903191|gb|AAH76429.1| Rbm19 protein, partial [Danio rerio]
Length = 275
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMS 135
+ TV +RG PF E+ V +F P+ PV + +GR SG VD + + +A+
Sbjct: 181 TEFTVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALR 240
Query: 136 KDRTNMQHRYIELF 149
D+ M RYIE+F
Sbjct: 241 LDKDYMGGRYIEVF 254
>gi|195175076|ref|XP_002028289.1| GL16722 [Drosophila persimilis]
gi|194117421|gb|EDW39464.1| GL16722 [Drosophila persimilis]
Length = 1044
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ LP+ AN RD+ +FF + +H G G+A + F+T EDA AM KDR
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHIIGGE-MGDAFIAFSTDEDARCAMLKDRE 62
Query: 140 NMQHRYIELFLNSSSPRGGV 159
+ + L L+S + V
Sbjct: 63 KLMEIQVRLLLSSRAEMQKV 82
>gi|159164255|pdb|2DNN|A Chain A, Solution Structure Of Rna Binding Domain In Rna-Binding
Protein 12
Length = 109
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 14 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 72
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ ++R M RY+E ++ ++ R V G I
Sbjct: 73 LKRNRMLMIQRYVE--VSPATERQWVAAGGHI 102
>gi|432909266|ref|XP_004078148.1| PREDICTED: RNA-binding protein 12B-like [Oryzias latipes]
Length = 631
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKDR 138
V + GLPF E + +FF+ + + + + G+ +G+A V F T EDAM+A+ K+
Sbjct: 133 VVFLNGLPFSVTENQICEFFKGLETNEIVLLKNHRGQNNGKAFVRFVTREDAMEALKKNM 192
Query: 139 TNMQHRYIEL 148
+ RY+E+
Sbjct: 193 EYIGTRYVEV 202
>gi|194864880|ref|XP_001971153.1| GG14589 [Drosophila erecta]
gi|190652936|gb|EDV50179.1| GG14589 [Drosophila erecta]
Length = 995
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ LP+ AN RD+ +FF + +H G G+A + F+T EDA AM KDR
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHIIGGE-MGDAFIAFSTDEDARCAMLKDRE 62
Query: 140 NMQHRYIELFLNSSSPRGGV 159
+ + L L+S + V
Sbjct: 63 KLMEIQVRLLLSSRAEMQKV 82
>gi|449299589|gb|EMC95602.1| hypothetical protein BAUCODRAFT_576806 [Baudoinia compniacensis
UAMH 10762]
Length = 511
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH-VDIHYE-NGRPSGEADVDFATHEDA 130
S GP T+++R LP+ +++D+ D F + V +I E N R +G V FA EDA
Sbjct: 406 SGGPESDTIYVRNLPWSTSDQDLIDLFTTIAEVKRAEIKMETNLRSAGTGVVQFANQEDA 465
Query: 131 MQAMSK 136
A++K
Sbjct: 466 ASAIAK 471
>gi|198422045|ref|XP_002120923.1| PREDICTED: similar to eukaryotic translation initiation factor 4B
[Ciona intestinalis]
Length = 497
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
SGP +T ++ LP+ A+E + +FF+ + +V + ENGR G V F + +QA
Sbjct: 93 SGP--YTAYVGNLPYDADEFVLQEFFKDIPMTNVRLQEENGRFRGYGYVQFPDKQSLIQA 150
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGG 170
+ + +Q R I + + + + G G G G
Sbjct: 151 LQMNDETLQKRVIRVDIADNQNKEGKGRGDRYGSLSG 187
>gi|198465484|ref|XP_001353649.2| GA20654 [Drosophila pseudoobscura pseudoobscura]
gi|198150179|gb|EAL31163.2| GA20654 [Drosophila pseudoobscura pseudoobscura]
Length = 1043
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ LP+ AN RD+ +FF + +H G G+A + F+T EDA AM KDR
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHIIGGE-MGDAFIAFSTDEDARCAMLKDRE 62
Query: 140 NMQHRYIELFLNSSSPRGGV 159
+ + L L+S + V
Sbjct: 63 KLMEIQVRLLLSSRAEMQKV 82
>gi|345479719|ref|XP_001600826.2| PREDICTED: epithelial splicing regulatory protein 2-like [Nasonia
vitripennis]
Length = 746
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S + MRGLP++ +RD+ D++ + V IH +NG+P+GE +F + E+A++A
Sbjct: 496 SFDCIIMRGLPYQTIDRDILDYYSDIGLVPHRIHMLLNQNGKPAGECFCEFNSCEEAVRA 555
Query: 134 MSKD 137
+K+
Sbjct: 556 TAKN 559
>gi|37932182|gb|AAP69824.1| SWAN ribonucleoprotein [Xenopus laevis]
Length = 877
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 73 SSGPSRH--TVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATH 127
S P H V+++GLP A + V DFF+ + V I+ NG+ +GE ++F
Sbjct: 422 SRSPHEHGFCVYLKGLPHEAENKHVIDFFKKLNIVEDSIYIAYGSNGKATGEGFLEFRNE 481
Query: 128 EDAMQAMSKDRTNMQHRYIEL 148
ED A+ + + M +R++++
Sbjct: 482 EDYKSALCRHKQYMGNRFVQV 502
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 29 GSGPGPIRGGPPRGGFRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPF 88
GSGP I PP GF G N + PG AG + SGP+ + ++ +PF
Sbjct: 766 GSGPA-ILNAPP--GFGPG--NMAVSGPPGFVAG--------SAKSGPT--VIRVQNMPF 810
Query: 89 RANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAM 134
++ DFF ++P V + + + G P+GEA V F + ++AM A+
Sbjct: 811 TVTVDEILDFFYGYQLIPGSVCLKFSDKGMPTGEAMVAFESRDEAMAAV 859
>gi|187953621|gb|AAI37621.1| C430048L16Rik protein [Mus musculus]
Length = 834
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ + GG
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTATEGG 243
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
V + LPF+AN ++ DFF V+P V I Y E G P GEA V + +A+ A+
Sbjct: 760 VMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSAVK 817
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF+ + +H G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGK-VGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSS 153
++ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
>gi|71067349|ref|NP_945195.1| RNA-binding protein 12B-B [Mus musculus]
gi|341941784|sp|Q66JV4.2|R12BB_MOUSE RecName: Full=RNA-binding protein 12B-B; AltName: Full=RNA-binding
motif protein 12B-B
gi|26348891|dbj|BAC38085.1| unnamed protein product [Mus musculus]
Length = 834
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ + GG
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTATEGG 243
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
V + LPF+AN ++ DFF V+P V I Y E G P GEA V + +A+ A+
Sbjct: 760 VMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSAVK 817
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF+ + +H G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGK-VGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSS 153
++ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
>gi|29747798|gb|AAH50844.1| RNA binding motif protein 12B [Mus musculus]
Length = 836
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ + GG
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTATEGG 243
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
V + LPF+AN ++ DFF V+P V + Y E G P GEA V + +A+ A+
Sbjct: 762 VKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEALAAVK 819
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF+ + +H G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGK-VGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSS 153
++ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
>gi|172088112|ref|NP_082502.2| RNA-binding protein 12B-A [Mus musculus]
gi|124020998|sp|Q80YR9.2|R12BA_MOUSE RecName: Full=RNA-binding protein 12B-A; AltName: Full=RNA-binding
motif protein 12B-A
Length = 836
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ + GG
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTATEGG 243
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
V + LPF+AN ++ DFF V+P V + Y E G P GEA V + +A+ A+
Sbjct: 762 VKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEALAAVK 819
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF+ + +H G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGK-VGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSS 153
++ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
>gi|195376909|ref|XP_002047235.1| GJ12048 [Drosophila virilis]
gi|194154393|gb|EDW69577.1| GJ12048 [Drosophila virilis]
Length = 1091
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ LP+ AN RD+ +FF + +H G G+A + F+T EDA AM KDR
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHIIGGE-MGDAFIAFSTDEDARCAMLKDRE 62
Query: 140 NMQHRYIELFLNSSSPRGGV 159
+ + L L+S + V
Sbjct: 63 KLMEVQVRLLLSSRAEMQKV 82
>gi|148673677|gb|EDL05624.1| mCG123728, isoform CRA_a [Mus musculus]
gi|148673678|gb|EDL05625.1| mCG123728, isoform CRA_a [Mus musculus]
gi|148673679|gb|EDL05626.1| mCG123728, isoform CRA_a [Mus musculus]
Length = 834
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ + GG
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTATEGG 243
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
V + LPF+AN ++ DFF V+P V + Y E G P GEA V + +A+ A+
Sbjct: 760 VKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEALAAVK 817
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF+ + +H G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGK-VGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSS 153
++ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
>gi|256073174|ref|XP_002572907.1| rna-binding protein 12 (sh3/ww domain anchor protein in the
nucleus) (swan) [Schistosoma mansoni]
gi|350645108|emb|CCD60169.1| rna-binding protein 12 (sh3/ww domain anchor protein in the
nucleus) (swan), putative [Schistosoma mansoni]
Length = 923
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ LP AN ++ FF + +H G G+A + FAT EDA +AM DR
Sbjct: 4 IIRLQNLPISANASNIRRFFSGLSIPEGGVHIVGGT-EGDAFIAFATDEDARKAMLLDRQ 62
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGG 174
+ + LFL+S + + S SGG
Sbjct: 63 TINGASVRLFLSSKAEMQSIIESAKTSALFSSGGN 97
>gi|195021602|ref|XP_001985427.1| GH14505 [Drosophila grimshawi]
gi|193898909|gb|EDV97775.1| GH14505 [Drosophila grimshawi]
Length = 1049
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ LP+ AN RD+ +FF + +H G G+A + F+T EDA AM KDR
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLAIPEGGVHIIGGE-MGDAFIAFSTDEDARCAMLKDRE 62
Query: 140 NMQHRYIELFLNSSSPRGGV 159
+ + L L+S + V
Sbjct: 63 KLMEVQVRLLLSSRAEMQKV 82
>gi|195439718|ref|XP_002067706.1| GK12567 [Drosophila willistoni]
gi|194163791|gb|EDW78692.1| GK12567 [Drosophila willistoni]
Length = 1092
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ LP+ AN RD+ +FF + +H G G+A + F+T EDA AM KDR
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHIIGGE-MGDAFIAFSTDEDARCAMLKDRE 62
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + L L+S + V + +
Sbjct: 63 KLMEVQVRLLLSSRAEMQKVIETARL 88
>gi|195127149|ref|XP_002008031.1| GI13280 [Drosophila mojavensis]
gi|193919640|gb|EDW18507.1| GI13280 [Drosophila mojavensis]
Length = 1101
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ LP+ AN RD+ +FF + +H G G+A + F+T EDA AM KDR
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHIIGGE-MGDAFIAFSTDEDARCAMLKDRE 62
Query: 140 NMQHRYIELFLNSSSPRGGVGGSG 163
+ + L L+S + V +
Sbjct: 63 KLMEIQVRLLLSSRAEMQKVIETA 86
>gi|195336616|ref|XP_002034931.1| GM14203 [Drosophila sechellia]
gi|194128024|gb|EDW50067.1| GM14203 [Drosophila sechellia]
Length = 987
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ LP+ AN RD+ +FF + +H G G+A + F+T EDA AM KDR
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHIIGGE-MGDAFIAFSTDEDARCAMLKDRE 62
Query: 140 NMQHRYIELFLNSSSPRGGV 159
+ + L L+S + V
Sbjct: 63 KLMEIQVRLLLSSRAEMQKV 82
>gi|195586962|ref|XP_002083236.1| GD13466 [Drosophila simulans]
gi|194195245|gb|EDX08821.1| GD13466 [Drosophila simulans]
Length = 986
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ LP+ AN RD+ +FF + +H G G+A + F+T EDA AM KDR
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHIIGGE-MGDAFIAFSTDEDARCAMLKDRE 62
Query: 140 NMQHRYIELFLNSSSPRGGV 159
+ + L L+S + V
Sbjct: 63 KLMEIQVRLLLSSRAEMQKV 82
>gi|24655341|ref|NP_647626.1| CG7879, isoform A [Drosophila melanogaster]
gi|24655346|ref|NP_728631.1| CG7879, isoform B [Drosophila melanogaster]
gi|7292101|gb|AAF47513.1| CG7879, isoform A [Drosophila melanogaster]
gi|7292102|gb|AAF47514.1| CG7879, isoform B [Drosophila melanogaster]
Length = 985
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ LP+ AN RD+ +FF + +H G G+A + F+T EDA AM KDR
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHIIGGE-MGDAFIAFSTDEDARCAMLKDRE 62
Query: 140 NMQHRYIELFLNSSSPRGGV 159
+ + L L+S + V
Sbjct: 63 KLMEIQVRLLLSSRAEMQKV 82
>gi|363741413|ref|XP_003642489.1| PREDICTED: RNA-binding protein 12-like [Gallus gallus]
Length = 880
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVD-IHYEN---GRPSGEADVDFATHEDAM 131
P V + G+PF A E DV +FF + + VD IH GR +G V F + +D
Sbjct: 301 PDDLYVSIHGMPFSATESDVKEFF---LGLRVDAIHMLKDHVGRNNGNGLVKFFSPQDTF 357
Query: 132 QAMSKDRTNMQHRYIEL 148
+A+ ++R M RY+E+
Sbjct: 358 EALKRNRMLMIQRYVEV 374
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 65 PGGRWVNESSGPSRH--TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGE 119
P G+ + S P V+++GLPF + + V DFF+ + V I+ NG+ GE
Sbjct: 415 PSGQKRSRSRSPHEQGFCVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGE 474
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIEL 148
V+F D A+ + + +R+I++
Sbjct: 475 GFVEFRNEADYKAALCHHKQYIGNRFIQV 503
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHED 129
S P + ++ +PF + ++ DFF V+P V + Y E G P+GEA V F + ++
Sbjct: 798 SGKPGPTVIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 857
Query: 130 AMQAM 134
AM A+
Sbjct: 858 AMAAV 862
>gi|195490443|ref|XP_002093142.1| GE20949 [Drosophila yakuba]
gi|194179243|gb|EDW92854.1| GE20949 [Drosophila yakuba]
Length = 1002
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ LP+ AN RD+ +FF + +H G G+A + F+T EDA AM KDR
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHIIGGE-MGDAFIAFSTDEDARCAMLKDRE 62
Query: 140 NMQHRYIELFLNSSSPRGGV 159
+ + L L+S + V
Sbjct: 63 KLMEIQVRLLLSSRAEMQKV 82
>gi|118381178|ref|XP_001023750.1| hypothetical protein TTHERM_00245200 [Tetrahymena thermophila]
gi|89305517|gb|EAS03505.1| hypothetical protein TTHERM_00245200 [Tetrahymena thermophila
SB210]
Length = 570
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH--VDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ E D+ FF+ + + + GRP GE V F +DA +A++
Sbjct: 385 VVRIRGLPYSCTEEDIKKFFKGLTILQGGIKRAILGGRPGGECFVIFQNKDDAHKALNFH 444
Query: 138 RTNMQHRYIELFL 150
+ +R+IE+FL
Sbjct: 445 MEKIHNRFIEVFL 457
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
+H + +RGLP+ A E ++ + + + DI + G+ SGEA V + D +A
Sbjct: 267 QQHFIRIRGLPYSAREPEIYELLKNIRIYKEDIAFLYDSEGKFSGEAYVRVYSQLDKQEA 326
Query: 134 MSKDRTNMQHRYIELF 149
+ + ++ R++E+F
Sbjct: 327 LCYNLNKVEGRFVEIF 342
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAM 134
+ T+ + G+PF ++ + +FF+ +IH G+ SG A V F +A +A+
Sbjct: 492 KSTLMVMGMPFSVTKQKILEFFKGFDINEREIHLLCSHTGKFSGSALVTFEDELEAQRAL 551
Query: 135 -SKDRTNMQHRYIELF 149
+K+ + +++RY+ELF
Sbjct: 552 KTKNFSYIENRYLELF 567
>gi|46195836|ref|NP_996869.1| RNA-binding protein 12 [Gallus gallus]
gi|37932175|gb|AAP69823.1| SWAN ribonucleoprotein [Gallus gallus]
Length = 887
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVD-IHYEN---GRPSGEADVDFATHEDAM 131
P V + G+PF A E DV +FF + + VD IH GR +G V F + +D
Sbjct: 301 PDDLYVSIHGMPFSATESDVKEFF---LGLRVDAIHMLKDHVGRNNGNGLVKFFSPQDTF 357
Query: 132 QAMSKDRTNMQHRYIEL 148
+A+ ++R M RY+E+
Sbjct: 358 EALKRNRMLMIQRYVEV 374
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 60 FAGPRPGGRWVNESSGPSRH--TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NG 114
F P G+ + S P V+++GLPF + + V DFF+ + V I+ NG
Sbjct: 410 FRSKSPSGQKRSRSRSPHEQGFCVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNG 469
Query: 115 RPSGEADVDFATHEDAMQAMSKDRTNMQHRYIEL 148
+ GE V+F D A+ + + +R+I++
Sbjct: 470 KAIGEGFVEFRNEADYKAALCHHKQYIGNRFIQV 503
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHED 129
S P + ++ +PF + ++ DFF V+P V + Y E G P+GEA V F + ++
Sbjct: 798 SGKPGPTVIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 857
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
AM A+ ++ R L NS S GV
Sbjct: 858 AMAAV----VDLNDRAYRLQENSKSSVLGV 883
>gi|307180346|gb|EFN68372.1| THO complex subunit 4 [Camponotus floridanus]
Length = 247
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 23 ANRFGGGSGPGPIRGGPPRGGF---RGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRH 79
A R GGG G RGG R RG N+ +D F G + GR V ++G ++
Sbjct: 42 AQRVGGGVMRGRNRGGIARSSLPYTRGDVNSAWKHDM---FDGVKKVGRGVIGNAGTTKL 98
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH-VDIHYE-NGRPSGEADVDFATHEDAMQAMSK 136
V L F ++ D+ + F P+ +HY+ +GR G ADV F DA++AM +
Sbjct: 99 LVS--NLDFGVSDSDIQELFSEFGPLKSAAVHYDRSGRSLGSADVIFERRADAIKAMKQ 155
>gi|20152135|gb|AAM11427.1| SD09402p [Drosophila melanogaster]
Length = 984
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ LP+ AN RD+ +FF + +H G G+A + F+T EDA AM KDR
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHIIGGE-MGDAFIAFSTDEDARCAMLKDRE 62
Query: 140 NMQHRYIELFLNSSSPRGGV 159
+ + L L+S + V
Sbjct: 63 KLMEIQVRLLLSSRAEMQKV 82
>gi|12851402|dbj|BAB29027.1| unnamed protein product [Mus musculus]
Length = 723
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 43 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 102
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ + GG
Sbjct: 103 FMGSRFIEVMQGSEQQWIEFGGTATEGG 130
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
V + LPF+AN ++ DFF V+P V + Y E G P GEA V + +A+ A+
Sbjct: 649 VKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEALAAVK 706
>gi|397629333|gb|EJK69314.1| hypothetical protein THAOC_09441 [Thalassiosira oceanica]
Length = 407
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 79 HTVHMRGLPFRANERDVADFFRP-----VVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
HTV + GLPF A+E DV FF ++ + + + GR G V FA+ E +A
Sbjct: 189 HTVFVEGLPFSASEDDVRSFFAQNGCDDILQIRLPRWQDTGRLRGFGHVVFASTETRSRA 248
Query: 134 MSKDR--TNMQHRYIELFLNSSSPRGGVGGSGSIGG 167
+S + N+ RY+ + +++PR G S+GG
Sbjct: 249 LSDEVNGKNLGSRYVTV-KEANAPRAGTTAGASLGG 283
>gi|159468195|ref|XP_001692268.1| hypothetical protein CHLREDRAFT_189395 [Chlamydomonas reinhardtii]
gi|158278454|gb|EDP04218.1| predicted protein [Chlamydomonas reinhardtii]
Length = 913
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 92 ERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149
E D+ FF P + YE +GRPSG A +F + E+A++A+SK+ + RY+ L
Sbjct: 631 EDDIRQFFAPYDLKGISFVYEPDGRPSGLAFAEFVSKEEALKALSKNGEYIGQRYVRLL 689
>gi|291388277|ref|XP_002710735.1| PREDICTED: RNA binding motif protein 12-like [Oryctolagus
cuniculus]
Length = 864
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 58 GGFAGPRPGGRWVNE---SSGPSRHT-VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
GGF P GR++ + + G SR T + + LPF+AN ++ DFF ++P V I Y
Sbjct: 767 GGF----PEGRFMPDPKLNCGSSRVTPIKIMNLPFKANVNEILDFFHGYRIIPDSVSIQY 822
Query: 112 -ENGRPSGEADVDFATHEDAMQAMS 135
E G P+GEA V + +AM A+
Sbjct: 823 NEQGLPTGEAVVAMINYNEAMAAIK 847
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGS 162
M R+IE+ S +GG+
Sbjct: 217 FMGSRFIEVMQGSEEQWIELGGN 239
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGG-DVGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSSPRGG---VGGSGSIG----GFGGSGGGRLGGF 179
++ +ELFL+S + + + +G G G SG G + F
Sbjct: 63 YIKDSSVELFLSSRAEMQKTIQMKRTDRVGRGRPGSGASGVGSMSNF 109
>gi|444525890|gb|ELV14185.1| RNA-binding protein 12B [Tupaia chinensis]
Length = 1012
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A DV FF + +H G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDVRHFFTGLTIPDGGVHIIGGE-VGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSS--------PRGGVGGSGSIGGFGGSGGGRLGGF 179
+++ +ELFL+S + R G G G +G G SG G L F
Sbjct: 63 LIKNSSVELFLSSKAEMQKTIEMKRSGHIGRGRLGS-GASGVGSLSNF 109
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDA 130
S P VH++ LP N+RD+ +FFR + + Y++ R + A V F T +D
Sbjct: 277 SRSPLGFYVHLKNLPLSINKRDLRNFFRDTDLANEQIRFLYKDERRTRYAFVTFKTLKDY 336
Query: 131 MQAMSKDRTNMQHRYIEL 148
A+S +T +Q+R + +
Sbjct: 337 NTALSLHKTVLQYRPVHV 354
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S +GG+ G
Sbjct: 217 FMGSRFIEVMQGSEQQWIDLGGNAVKEG 244
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+ + LPF+AN ++ DFF +VP V I Y + G P+GEA V + +AM A+
Sbjct: 938 IKIMNLPFKANVNEILDFFHGYRIVPDSVSIQYNDQGLPTGEAIVAMINYNEAMAAIK 995
>gi|327269587|ref|XP_003219575.1| PREDICTED: RNA-binding protein 12B-like [Anolis carolinensis]
Length = 730
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 65 PGGRWVNES--SGPSR--HTVHMRGLPFRANERDVADFFR--PVVPVHVDI-HYENGRPS 117
PGGR++++S SG S + ++ +PFRA ++ DFF ++P + I H + G PS
Sbjct: 636 PGGRFMSDSNVSGSSNCFTLIKLKNIPFRATPNEILDFFHGYKIIPESLSIQHNQYGLPS 695
Query: 118 GEADVDFATHEDAMQAMSK 136
GEA + + +AM +++
Sbjct: 696 GEAVIALVNYNEAMAVVNE 714
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAM 131
++S + +R +P+ A E D+ FF + + + NG +G+ V FAT D
Sbjct: 170 KTSNSDELYLFIRSMPYTATEDDIIAFFDGLQVDGMIMLKTNGVNNGDGLVKFATPTDCT 229
Query: 132 QAMSKDRTNMQHRYIELF 149
+ + +DR M+HR+I ++
Sbjct: 230 RGLQRDRQYMRHRFIRIY 247
>gi|357144691|ref|XP_003573381.1| PREDICTED: uncharacterized protein LOC100836665 isoform 3
[Brachypodium distachyon]
Length = 580
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRP---VVPVHVDIHYENGRPSGEADVDFATH 127
N+S G T+ M LPF A V +FF VV V + H E+G P G A V+FAT
Sbjct: 306 NQSQGTGSKTLFMGNLPFSAEFGQVKEFFAEAGEVVDVRLATH-EDGHPKGYAHVEFATA 364
Query: 128 EDAMQAM 134
EDA + +
Sbjct: 365 EDAKKVI 371
>gi|384248950|gb|EIE22433.1| hypothetical protein COCSUDRAFT_66623 [Coccomyxa subellipsoidea
C-169]
Length = 568
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 57 PGGFAGPRPGGRWVNESSGPSR-------HTVHMRGLPFRANERDVADFFRP---VVPVH 106
PG AG + G + + SGPSR V + +P+ A E ++ D F P VV VH
Sbjct: 55 PGEGAGYQSVGAYSSAPSGPSRPLPDHPPFKVFIGNIPYEATENEMKDIFSPPLEVVDVH 114
Query: 107 VDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSP 155
+ H + +P G V+FAT D + + KD + + R I + + P
Sbjct: 115 IIKHKDTLKPRG-CFVEFATRSDLEKGLMKDGSVVLGRPIRVDVAEDRP 162
>gi|242003936|ref|XP_002422915.1| THO complex subunit, putative [Pediculus humanus corporis]
gi|212505808|gb|EEB10177.1| THO complex subunit, putative [Pediculus humanus corporis]
Length = 315
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 20 FGGANRFGGGSGPGPIRGGPPR----GGFRGGFN------NDRWN-DRPGGFAGPRPGGR 68
FGG NR GS + GG R R ++ RW D GFA P R
Sbjct: 98 FGGGNRRSRGSLRNTVGGGALRSRRSANLRSPYSRGTGDIESRWQHDMFDGFA-PVRSPR 156
Query: 69 WVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH-VDIHYE-NGRPSGEADVDFAT 126
V + GP++ + L F ++ DV + F P+ +HY+ +GR G ADV F
Sbjct: 157 GVQGAMGPAKLLIS--NLEFGVSDSDVTELFAEFGPLKSAAVHYDRSGRSLGTADVIFLR 214
Query: 127 HEDAMQAMSK 136
EDA++AM +
Sbjct: 215 REDAIKAMMQ 224
>gi|403350666|gb|EJY74800.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 795
Score = 43.5 bits (101), Expect = 0.072, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 40 PRGGFRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFF 99
P+GG+ G D + R A P GG G TV + L F E+++++ F
Sbjct: 680 PQGGYGGQNRFDSYQQRDQSQAAPSRGG------PGNDEKTVFVGNLGFNTQEKEISEIF 733
Query: 100 RP--VVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSP 155
+ PV V + +GR G A V+F + +DA +A D + R I + + P
Sbjct: 734 TKERLNPVRVRMLQSDGRFKGAAFVEFDSKDDADKACKCDGKSFGDRKIRVNPAGNKP 791
>gi|354491414|ref|XP_003507850.1| PREDICTED: RNA-binding protein 12B-A-like [Cricetulus griseus]
Length = 850
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 166 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAVVKFASCIDASGGLKCHRS 225
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ + GG
Sbjct: 226 FMGSRFIEVMQGSEQQWIEFGGNAAKGG 253
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 61 AGPRPGGRW-----VNESSGPSRHT-VHMRGLPFRANERDVADFFR--PVVPVHVDIHY- 111
G P GR+ +N SSG R T V + LPF+AN ++ DFF V+P V I Y
Sbjct: 752 IGCVPEGRFMPDLKLNCSSG--RITPVKIMNLPFKANANEILDFFHGYKVIPDSVSIQYN 809
Query: 112 ENGRPSGEADVDFATHEDAMQAMSK 136
E G P GEA + + +A+ A+ +
Sbjct: 810 EQGLPIGEAIIAMINYNEAIAAIKE 834
>gi|237840719|ref|XP_002369657.1| hypothetical protein TGME49_008970 [Toxoplasma gondii ME49]
gi|211967321|gb|EEB02517.1| hypothetical protein TGME49_008970 [Toxoplasma gondii ME49]
gi|221482873|gb|EEE21204.1| serine/arginine rich splicing factor, putative [Toxoplasma gondii
GT1]
gi|221503334|gb|EEE29032.1| polyadenylate-binding protein, putative [Toxoplasma gondii VEG]
Length = 309
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 19/128 (14%)
Query: 12 APYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGGFNNDRWNDRPGGFAGPRPGGRWVN 71
+PY R DR G F G P G P FRG F D++ G
Sbjct: 69 SPYTRRDRDGRDENFRGARNSSP---GEPGDDFRGRFRGDKY-------------GSGSG 112
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFF---RPVVPVHVDIHYENGRPSGEADVDFATHE 128
E + R++V RG+ A + D+ FF V V++ +HY+ +P G A ++F T
Sbjct: 113 EQNKHRRYSVVARGVDRSATQDDLRKFFGRCSDVKDVYIPLHYKTKQPRGFAFIEFETEW 172
Query: 129 DAMQAMSK 136
++ + +
Sbjct: 173 AMVKVLKQ 180
>gi|383850832|ref|XP_003700978.1| PREDICTED: THO complex subunit 4-like [Megachile rotundata]
Length = 249
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 23 ANRFGGGSGPGPIRGGPPRGGF---RGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRH 79
R GGG G RGG R RG N+ +D F G + GR S+G ++
Sbjct: 45 TQRVGGGVMRGRSRGGITRNSLPYTRGDVNSAWKHDM---FDGVKKVGRSAIGSAGTTKL 101
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH-VDIHYE-NGRPSGEADVDFATHEDAMQAMSK 136
V L F ++ D+ + F P+ +HY+ +GR G ADV F DA++AM +
Sbjct: 102 LVS--NLDFGVSDSDIQELFSEFGPLKSAAVHYDRSGRSLGSADVIFERRADAIKAMKQ 158
>gi|348520489|ref|XP_003447760.1| PREDICTED: hypothetical protein LOC100697955 [Oreochromis
niloticus]
Length = 1432
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSK 136
V+++GLP+ A+++ + +FF+ + V I+ NGR +GE ++F + +D A+
Sbjct: 437 CVYLKGLPYEADKKQIKEFFKNLDIVEDSIYIAYGPNGRATGEGFLEFKSEQDYKGALGA 496
Query: 137 DRTNMQHRYIEL 148
M R+I++
Sbjct: 497 HMQYMGSRFIQV 508
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHED 129
++GP+ V ++ +PF ++ DFF V+P V + + E G P+GEA V F +HE+
Sbjct: 820 AAGPT--IVKLQNMPFTVTVDEIMDFFYGYQVLPGSVCLQFNEKGLPTGEAMVAFQSHEE 877
Query: 130 AMQAM 134
A A+
Sbjct: 878 ATAAV 882
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAM 134
P V ++ LPF +E +V +FFR + V + + GRP+G A V F + +D+ +A+
Sbjct: 302 PDELFVLLQNLPFSCSEVEVREFFRGLGVDAVRLMRDGQGRPTGRAMVKFFSPQDSFEAV 361
Query: 135 SKDRTNMQHRYIEL 148
+ M R+IE+
Sbjct: 362 KRGGGMMGQRFIEI 375
>gi|51593298|gb|AAH80741.1| C430048L16Rik protein [Mus musculus]
Length = 834
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ N+ DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNDDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ + GG
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTATEGG 243
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
V + LPF+AN ++ DFF V+P V I Y E G P GEA V + +A+ A+
Sbjct: 760 VMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSAVK 817
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF+ + +H G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGK-VGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSS 153
++ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
>gi|417405481|gb|JAA49451.1| Putative conserved secreted protein precursor [Desmodus rotundus]
Length = 976
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GGS S G
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGSTSKEG 244
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+ + LPF+AN ++ DFF ++P V I Y E G P+GEA V + +AM A+
Sbjct: 902 IKIMNLPFKANVNEILDFFHGYRIIPDSVRIQYNEQGLPTGEAIVAMVNYNEAMAAIK 959
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPADIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIG-------GFGGSGGGRLGGF 179
++ +ELFL+S + G G SG G L F
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDHKGRERPGSGASGVGCLSNF 109
>gi|358054464|dbj|GAA99390.1| hypothetical protein E5Q_06087 [Mixia osmundae IAM 14324]
Length = 392
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 63 PRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEAD 121
PRP R+ N P + ++ LP+ D+ + F+ V +H + ENGR G
Sbjct: 293 PRPD-RFANIDPSPQ---IFVKNLPWSTANEDLVELFQTVGTVLHAEATQENGRAKGTGV 348
Query: 122 VDFATHEDAMQAMSK 136
V+FAT +DA A++K
Sbjct: 349 VEFATADDAQTAITK 363
>gi|348588498|ref|XP_003480003.1| PREDICTED: RNA-binding protein 12B-like [Cavia porcellus]
Length = 850
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
V + LPF+AN ++ DFF ++P V I Y E G P+GEA V + +AM A+
Sbjct: 776 VKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 833
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG G
Sbjct: 217 FMGSRFIEVMQGSERQWIEFGGDAIEKG 244
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIH--YENGRPSGEADVDFATHEDA 130
S P VH++ L ++RD+ +FFR + + I Y++ + + A V F T +D
Sbjct: 278 SRSPVGFYVHLKNLSLNVSKRDLRNFFRDIDLTNEQIRFLYKDEKRTRYAFVTFKTQKDY 337
Query: 131 MQAMSKDRTNMQHRYIEL 148
A+ +T +QHR + +
Sbjct: 338 KTALGFHKTILQHRPVHV 355
>gi|310789593|gb|EFQ25126.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 570
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 79 HTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+T H+ L + A E V +FF +V V + E RP G A +F E QA++
Sbjct: 91 YTAHLGNLSYDATEETVNEFFEGCDIVSVRIIEDREQQRPKGFAYAEFKDLEGLKQALTL 150
Query: 137 DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLG------GFGGSD--PSSPF 188
D Q R I + + + PRGG G S F S R G G GG+D PS
Sbjct: 151 DGQTFQGRAIRIKI-ADPPRGGDRGGESNRDF--SDWSRKGPLPDLPGRGGNDRRPSEFG 207
Query: 189 ERRNPNQ 195
ERR P +
Sbjct: 208 ERRGPRE 214
>gi|431917851|gb|ELK17082.1| RNA-binding protein 12B [Pteropus alecto]
Length = 965
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+ + LPF+AN ++ DFF ++P V I Y E G P+GEA V + +AM A+
Sbjct: 891 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 948
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 197 LFLRGLPYLVNENDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 256
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GGS G
Sbjct: 257 FMGSRFIEVMQGSEQQWIEFGGSAIKEG 284
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G GEA + FAT EDA +A+S+
Sbjct: 45 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGG-DVGEAFIIFATDEDARRAISRSGG 103
Query: 140 NMQHRYIELFLNSSSPRGG---VGGSGSIG----GFGGSGGGRLGGF 179
++ +ELFL+S + + + IG G G SG G L F
Sbjct: 104 FIKDSSVELFLSSKAEMQKTIEMKRTDRIGRERPGSGASGVGCLSNF 150
>gi|351713473|gb|EHB16392.1| RNA-binding protein 12B [Heterocephalus glaber]
Length = 959
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
V + LPF+AN ++ DFF ++P V I Y E G P+GEA V + +AM A+
Sbjct: 885 VKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 942
Score = 39.7 bits (91), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG G
Sbjct: 217 FMGSRFIEVMQGSEQQWIECGGDAVKKG 244
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGG-DIGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIG-------GFGGSGGGRLGGF 179
++ +ELFL+S + I G G SG G L +
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRIDRIGRGRPGSGASGVGSLSNY 109
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIH--YENGRPSGEADVDFATHEDA 130
S P VH++ L ++RD+ +FFR + + I Y++ + + A V F T +D
Sbjct: 278 SRSPVGFYVHLKNLSLNVSKRDLRNFFRDIDLTNEQIRFLYKDEKRTRYAFVTFKTLKDY 337
Query: 131 MQAMSKDRTNMQHRYIEL 148
A+ +T +QHR I +
Sbjct: 338 NTALGFHKTVLQHRPIHI 355
>gi|390363422|ref|XP_003730367.1| PREDICTED: uncharacterized protein LOC100888204 [Strongylocentrotus
purpuratus]
Length = 1832
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRP--VVPVHVDIHYEN-GRPSGEADVDFATHE 128
E SG + V + GLPF +R V F R + P V IH ++ GR +G A++
Sbjct: 576 EPSGDEFYAVRLTGLPFDCTDRGVRLFLRDINIAPDGVQIHRDHRGRITGTANIKLQGPS 635
Query: 129 DAMQAMSKDRTNMQHRYIEL 148
D QA+ + + M RYI++
Sbjct: 636 DIDQALKRHQQYMGKRYIDV 655
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 61 AGPRPGGRWVNESSGPSRHTV-HMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGR 115
GP PG E +G S + H+R +P+ A D+A FF +VP +H+ ++ E G+
Sbjct: 1473 TGPLPGPHGRPEDAGTSEYVCAHIRNVPYSARWPDIAHFFSGLQIVPGGIHIMVNSE-GK 1531
Query: 116 PSGEADVDFATHEDAMQAMSKDRTNMQHRYIEL 148
P+G ++FA +A + M+ R +++
Sbjct: 1532 PTGHCFIEFADAHNARLTEERRLHPMRDRPLQI 1564
>gi|403177298|ref|XP_003888795.1| hypothetical protein PGTG_22456 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375172812|gb|EHS64731.1| hypothetical protein PGTG_22456 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 336
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 66 GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYE-NGRPSGEADVD 123
GGR G S + + GLPF +D+ D FR + D++++ +G P+G V
Sbjct: 84 GGRSSFSEGGQSCKQLSISGLPFNVGWQDLKDMFRSAGSIIRADVYFDADGSPTGNGTVI 143
Query: 124 FATHEDAMQAMS 135
F T DA A+S
Sbjct: 144 FETSRDAQNAIS 155
>gi|301762464|ref|XP_002916650.1| PREDICTED: RNA-binding protein 12B-like [Ailuropoda melanoleuca]
gi|281349037|gb|EFB24621.1| hypothetical protein PANDA_004747 [Ailuropoda melanoleuca]
Length = 985
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+ + LPF+AN ++ DFF V+P V I Y E G P+GEA V + +AM A+
Sbjct: 911 IKIMNLPFKANVNEILDFFHGYRVIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 968
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSSPRGG---VGGSGSIG----GFGGSGGGRLGGF 179
++ +ELFL+S + + + IG G G SG G L F
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRIGRERPGSGASGAGSLSNF 109
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGSG 163
M R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNA 240
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDA 130
S P VH++ L N+RD+ +FFR + + Y++ R + A V F T +D
Sbjct: 278 SRSPLGFYVHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVTFKTLKDY 337
Query: 131 MQAMSKDRTNMQHRYIEL 148
A+ +T +Q+R + +
Sbjct: 338 NTALGLHKTVLQYRPVHI 355
>gi|410987464|ref|XP_004000021.1| PREDICTED: RNA-binding protein 12B [Felis catus]
Length = 999
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+ + LPF+AN ++ DFF ++P V I Y E G P+GEA V + +AM A+
Sbjct: 925 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 982
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 170 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 229
Query: 140 NMQHRYIELFLNSSSPRGGVGGSG 163
M R+IE+ S GG+
Sbjct: 230 FMGSRFIEVMQGSEQQWIEFGGNA 253
>gi|350296577|gb|EGZ77554.1| RNA-binding domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 356
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 61 AGPRPGGRWVN------ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPV---HVDIHY 111
AG +P + N ++ P T+ + +PF A+E V+DFF V V +
Sbjct: 188 AGNKPQDKAANRAAKHGDTISPESDTLFVGNMPFSADESVVSDFFNSVASVASLRIPTDQ 247
Query: 112 ENGRPSGEADVDFATHEDAMQAMSK 136
E+GRP G A V F + EDA A +
Sbjct: 248 ESGRPKGFAYVTFNSVEDAKNAFEQ 272
>gi|336464486|gb|EGO52726.1| hypothetical protein NEUTE1DRAFT_91358 [Neurospora tetrasperma FGSC
2508]
Length = 356
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 61 AGPRPGGRWVN------ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPV---HVDIHY 111
AG +P + N ++ P T+ + +PF A+E V+DFF V V +
Sbjct: 188 AGNKPQDKAANRAAKHGDTISPESDTLFVGNMPFSADESVVSDFFNSVASVASLRIPTDQ 247
Query: 112 ENGRPSGEADVDFATHEDAMQAMSK 136
E+GRP G A V F + EDA A +
Sbjct: 248 ESGRPKGFAYVTFNSVEDAKNAFEQ 272
>gi|380477345|emb|CCF44211.1| translation initiation factor 4B [Colletotrichum higginsianum]
Length = 350
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 56/127 (44%), Gaps = 13/127 (10%)
Query: 79 HTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+T H+ L + A E V +FF +V V + E RP G A +F E QA++
Sbjct: 101 YTAHLGNLSYDATEETVNEFFEGCDIVSVRIIEDREQQRPKGFAYAEFKDLEGLKQALTL 160
Query: 137 DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLG------GFGGSD--PSSPF 188
D Q R I + + + PR G G S F S R G G GG+D PS
Sbjct: 161 DGQTFQGRAIRIKI-ADPPRSGDRGGESNRDF--SDWSRKGPLPDLPGRGGNDRRPSDFG 217
Query: 189 ERRNPNQ 195
ERR P +
Sbjct: 218 ERRGPRE 224
>gi|385305976|gb|EIF49917.1| poly(a+) rna-binding protein [Dekkera bruxellensis AWRI1499]
Length = 439
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 58 GGFAG-PRPGGRWVNES---SGPSRHTVHMRG-----LPFRANERDVADFFRPVVPV-HV 107
GG+ G PR GG E GP R V+ LP+R + +D+ D FR V V H
Sbjct: 34 GGYYGRPRRGGYRFREXGRPRGPPREHVYENSVFVGNLPYRTSWQDLKDCFRDVGEVLHA 93
Query: 108 DIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSSP 155
DI +G G V+FA+ E A +A+ DRT+ R E+F+ P
Sbjct: 94 DIMSFHGTSKGMGTVEFASRELAQKAIRMFDRTDFMGR--EIFVREDQP 140
>gi|395818217|ref|XP_003782532.1| PREDICTED: RNA-binding protein 12B isoform 3 [Otolemur garnettii]
Length = 996
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+ + LPF+AN ++ DFF ++P V I Y E G P+GEA V + +AM A+
Sbjct: 922 IKVMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 979
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 167 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 226
Query: 140 NMQHRYIELFLNSSSPRGGVGGSG 163
M R+IE+ S GG+
Sbjct: 227 FMGSRFIEVMQGSEQQWIEFGGNA 250
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G+ GEA + FAT EDA +A+S+
Sbjct: 14 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGK-IGEAFIIFATDEDARRAISRSGG 72
Query: 140 NMQHRYIELFLNSSS 154
++ +ELFL+S +
Sbjct: 73 FIKDSSVELFLSSKA 87
>gi|407915850|gb|EKG09360.1| hypothetical protein MPH_13626 [Macrophomina phaseolina MS6]
Length = 218
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH-VDIHYE-NGRPSGEADVDFATHEDA 130
S G + +++R LP+ + D+ + F + V +I YE NGR G V+F T E+A
Sbjct: 111 SGGERSNIIYVRNLPWSTSNEDLVELFTTIGKVERAEIQYEPNGRSRGTGVVEFDTAENA 170
Query: 131 MQAMSK 136
A+SK
Sbjct: 171 ETAISK 176
>gi|380786971|gb|AFE65361.1| RNA-binding protein 12B [Macaca mulatta]
Length = 1001
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+ + LPF+AN ++ DFF ++P V I Y E G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ G
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNAVKEG 244
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSSPRGG---VGGSGSIG----GFGGSGGGRLGGFGGS 182
++ +ELFL+S + + + +G G G SG G L F S
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNFIES 112
>gi|344273251|ref|XP_003408437.1| PREDICTED: RNA-binding protein 12B-like [Loxodonta africana]
Length = 971
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF+ + +H G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGE-VGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSS 154
++ Y+ELFL+S +
Sbjct: 63 LIKDSYVELFLSSKA 77
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 65 PGGRWVNE---SSGPSRHT-VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPS 117
P GR++ + + G R T + + LPF+AN ++ DFF V+P V I Y E G P
Sbjct: 877 PEGRFMPDPKLNCGSDRVTPIKIMNLPFKANVNEILDFFHGYKVIPDSVSIQYNEKGLPI 936
Query: 118 GEADVDFATHEDAMQAMS 135
GEA V + +A+ A+
Sbjct: 937 GEAIVTMINYNEAVAAIK 954
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 81 VHMRGLPFRANERDVADFFRPVVP---VHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
+ +RGLP+ NE DV FF + + + +H +GR +G+A V FA+ DA +
Sbjct: 152 LFLRGLPYLVNEDDVRVFFAGLCVDGVIFLKLH--DGRNNGDAIVKFASCIDASGGLKCH 209
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGS 162
R+ M R+IE+ +S GG
Sbjct: 210 RSFMGSRFIEVMQSSEQQWIHCGGK 234
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDA 130
S P H VH++ L ++RD+ FFR + + Y+N + + A V F T +D
Sbjct: 270 SRSPVGHYVHLKNLSLGISKRDLKSFFRDTDLSNEQITFLYKNEKRTRYALVMFKTLKDF 329
Query: 131 MQAMSKDRTNMQHRYIEL 148
A++ +T +Q+R I +
Sbjct: 330 YTALALHKTIIQYRPIHI 347
>gi|395818213|ref|XP_003782530.1| PREDICTED: RNA-binding protein 12B isoform 1 [Otolemur garnettii]
gi|395818215|ref|XP_003782531.1| PREDICTED: RNA-binding protein 12B isoform 2 [Otolemur garnettii]
Length = 986
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+ + LPF+AN ++ DFF ++P V I Y E G P+GEA V + +AM A+
Sbjct: 912 IKVMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 969
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGSG 163
M R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNA 240
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGK-IGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSS 154
++ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|297683295|ref|XP_002819319.1| PREDICTED: RNA-binding protein 12B isoform 2 [Pongo abelii]
gi|297683297|ref|XP_002819320.1| PREDICTED: RNA-binding protein 12B isoform 3 [Pongo abelii]
gi|395739892|ref|XP_003777333.1| PREDICTED: RNA-binding protein 12B [Pongo abelii]
gi|395739895|ref|XP_003777334.1| PREDICTED: RNA-binding protein 12B [Pongo abelii]
Length = 1001
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+ + LPF+AN ++ DFF ++P V I Y E G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ G
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNAVKEG 244
Score = 36.6 bits (83), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSS 154
++ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|403295801|ref|XP_003938814.1| PREDICTED: RNA-binding protein 12B [Saimiri boliviensis
boliviensis]
Length = 1001
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+ + LPF+AN ++ DFF ++P V I Y E G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 19/110 (17%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSS------------------PRGGVGGSGSIGGFGGS 171
++ +ELFL+S + PR G G GS+ F S
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIDMKRTDRVGRGRPRSGASGVGSLSNFIES 112
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ G
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNAVKEG 244
>gi|402878712|ref|XP_003903017.1| PREDICTED: RNA-binding protein 12B isoform 1 [Papio anubis]
gi|402878714|ref|XP_003903018.1| PREDICTED: RNA-binding protein 12B isoform 2 [Papio anubis]
Length = 1001
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+ + LPF+AN ++ DFF ++P V I Y E G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ G
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNAVKEG 244
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSSPRGG---VGGSGSIG----GFGGSGGGRLGGFGGS 182
++ +ELFL+S + + + +G G G SG G L F S
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNFIES 112
>gi|296226920|ref|XP_002759119.1| PREDICTED: RNA-binding protein 12B isoform 1 [Callithrix jacchus]
gi|296226922|ref|XP_002759120.1| PREDICTED: RNA-binding protein 12B isoform 2 [Callithrix jacchus]
gi|390475792|ref|XP_003735019.1| PREDICTED: RNA-binding protein 12B [Callithrix jacchus]
gi|390475794|ref|XP_003735020.1| PREDICTED: RNA-binding protein 12B [Callithrix jacchus]
gi|390475796|ref|XP_003735021.1| PREDICTED: RNA-binding protein 12B [Callithrix jacchus]
Length = 1001
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+ + LPF+AN ++ DFF ++P V I Y E G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 19/110 (17%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSS------------------PRGGVGGSGSIGGFGGS 171
++ +ELFL+S + PR G G GS+ F S
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIDMKRTDRVGRGRPRSGASGVGSLSHFIES 112
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ G
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNAVKEG 244
>gi|224060641|ref|XP_002193452.1| PREDICTED: nucleolin [Taeniopygia guttata]
Length = 692
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAM-SKDR 138
T+ + L + A E + + F+ + V GRP G A VDFAT EDA +A+ S +
Sbjct: 456 TLIVNNLSYAATEETLQEVFKKASSIRVP-QNNQGRPKGYAFVDFATAEDAKEALNSLNN 514
Query: 139 TNMQHRYIELFLNSSSPRGG 158
T ++ R I L +S S + G
Sbjct: 515 TEIEGRTIRLEFSSPSWQKG 534
>gi|355698096|gb|EHH28644.1| RNA-binding motif protein 12B [Macaca mulatta]
gi|355779824|gb|EHH64300.1| RNA-binding motif protein 12B [Macaca fascicularis]
gi|383409041|gb|AFH27734.1| RNA-binding protein 12B [Macaca mulatta]
Length = 1001
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+ + LPF+AN ++ DFF ++P V I Y E G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ G
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNAVKEG 244
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSSPRGG---VGGSGSIG----GFGGSGGGRLGGFGGS 182
++ +ELFL+S + + + +G G G SG G L F S
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNFIES 112
>gi|297299765|ref|XP_002808531.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12B-like
[Macaca mulatta]
Length = 1001
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+ + LPF+AN ++ DFF ++P V I Y E G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ G
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNAVKEG 244
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSSPRGG---VGGSGSIG----GFGGSGGGRLGGFGGS 182
++ +ELFL+S + + + +G G G SG G L F S
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNFIES 112
>gi|85111281|ref|XP_963862.1| hypothetical protein NCU03092 [Neurospora crassa OR74A]
gi|28925605|gb|EAA34626.1| predicted protein [Neurospora crassa OR74A]
Length = 428
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 61 AGPRPGGRWVN------ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPV---HVDIHY 111
AG +P + N ++ P T+ + +PF A+E V+DFF V V +
Sbjct: 260 AGNKPQDKAANRAAKHGDTISPESDTLFVGNMPFSADESVVSDFFNSVASVASLRIPTDQ 319
Query: 112 ENGRPSGEADVDFATHEDAMQAMSK 136
E+GRP G A V F + EDA A +
Sbjct: 320 ESGRPKGFAYVTFNSVEDAKNAFEQ 344
>gi|47220951|emb|CAG03484.1| unnamed protein product [Tetraodon nigroviridis]
Length = 603
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 60 FAGPRP-GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSG 118
F G + G V +SG + T+ + L F A E + F + I +GRP G
Sbjct: 365 FVGEKSQKGAKVPAASGAASKTLVVNNLAFSATEEVLQSTFEKATSIR--IPQRDGRPKG 422
Query: 119 EADVDFATHEDAMQAM-SKDRTNMQHRYIELFLNSSSPR--GGVGGSG 163
A V+F T +DA A+ S + T+++ R I L + +S R GG G SG
Sbjct: 423 FAFVEFETVKDATDALESLNNTDIEGRSIRLEFSQNSGRGEGGRGNSG 470
>gi|332238333|ref|XP_003268351.1| PREDICTED: RNA-binding protein 12B isoform 1 [Nomascus leucogenys]
gi|332238335|ref|XP_003268352.1| PREDICTED: RNA-binding protein 12B isoform 2 [Nomascus leucogenys]
gi|332238337|ref|XP_003268353.1| PREDICTED: RNA-binding protein 12B isoform 3 [Nomascus leucogenys]
gi|441647142|ref|XP_004090789.1| PREDICTED: RNA-binding protein 12B [Nomascus leucogenys]
gi|441647145|ref|XP_004090790.1| PREDICTED: RNA-binding protein 12B [Nomascus leucogenys]
Length = 1001
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+ + LPF+AN ++ DFF ++P V I Y E G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAVINYNEAMAAIK 984
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ G
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNAVKEG 244
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSSPRGG---VGGSGSIG----GFGGSGGGRLGGFGGS 182
++ +ELFL+S + + + +G G G SG G L F S
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNFIES 112
>gi|345793203|ref|XP_544177.3| PREDICTED: RNA-binding protein 12B [Canis lupus familiaris]
Length = 994
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+ + LPF+AN ++ DFF ++P V I Y E G P+GEA V + +AM A+
Sbjct: 920 IKIMNLPFKANVNEILDFFHGYRILPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 977
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSSPRGG---VGGSGSIG----GFGGSGGGRLGGF 179
++ +ELFL+S + + + IG G G SG G L F
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMRRTDRIGRERPGSGASGAGSLSNF 109
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGSG 163
M R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNA 240
>gi|380091978|emb|CCC10246.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 456
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPV---HVDIHYENGRPSGEADVDFATHE 128
++ P T+ + +PF A+E V+DFF V V + E+GRP G A V F + E
Sbjct: 264 DTISPESDTLFVGNMPFTADESAVSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSIE 323
Query: 129 DAMQAMSK-DRTNMQHRYIEL 148
DA A + + +++Q R + L
Sbjct: 324 DAKNAFDQLNGSDLQGRPVRL 344
>gi|75071008|sp|Q5RFT7.1|RB12B_PONAB RecName: Full=RNA-binding protein 12B; AltName: Full=RNA-binding
motif protein 12B
gi|55725003|emb|CAH89370.1| hypothetical protein [Pongo abelii]
Length = 761
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGSG 163
M R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNA 240
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSS 154
++ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|336267120|ref|XP_003348326.1| hypothetical protein SMAC_02824 [Sordaria macrospora k-hell]
Length = 377
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPV---HVDIHYENGRPSGEADVDFATHE 128
++ P T+ + +PF A+E V+DFF V V + E+GRP G A V F + E
Sbjct: 264 DTISPESDTLFVGNMPFTADESAVSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSIE 323
Query: 129 DAMQAMSK-DRTNMQHRYIEL 148
DA A + + +++Q R + L
Sbjct: 324 DAKNAFDQLNGSDLQGRPVRL 344
>gi|302891931|ref|XP_003044847.1| hypothetical protein NECHADRAFT_42935 [Nectria haematococca mpVI
77-13-4]
gi|256725772|gb|EEU39134.1| hypothetical protein NECHADRAFT_42935 [Nectria haematococca mpVI
77-13-4]
Length = 566
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 79 HTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+T H+ L + V DFF VV V + E RP G V+FAT E QA++
Sbjct: 97 YTAHLGNLAYDVTNDAVTDFFTGCDVVSVRLIEDRELQRPKGFGYVEFATVEGLKQALAL 156
Query: 137 DRTNMQHRYIELFLNSSSPRGGVGGSG-SIGGFG 169
D + Q R + + + + PRGG G G SI G
Sbjct: 157 DGESFQGRTVRIKV-ADPPRGGDPGRGDSIRELG 189
>gi|357631743|gb|EHJ79212.1| hypothetical protein KGM_15640 [Danaus plexippus]
Length = 895
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 61/144 (42%), Gaps = 30/144 (20%)
Query: 36 RGGPPRGGF--RGGFN---------NDRWNDRPGGFAGPRPGGRWVNESSGPSRH----- 79
RGG RGGF RGGF+ W DR GF PR GR + P
Sbjct: 752 RGGFDRGGFMNRGGFDPRGRGMMRGRGGWPDRGRGF-DPRGRGRGFMRAPAPRDDEPDPA 810
Query: 80 ---------TVHMRGLPFRANERDVADFFRPVVPVHVDI---HYENGRPSGEADVDFATH 127
+ M +PFRA D+ FF D+ + E G+P+G+A V F T
Sbjct: 811 LEDFGTPGCVLSMENVPFRATIDDILAFFSDFELTQDDVIRRYNERGQPTGDARVSFRTP 870
Query: 128 EDAMQAMSK-DRTNMQHRYIELFL 150
DA +A S + +++ R I L L
Sbjct: 871 FDAKRAQSSHNLSSIFDRRITLTL 894
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V M+GLP A +R + +F V IH NG PSG+ +F T ++A QA
Sbjct: 623 SLDCVLMKGLPREATDRTIVNFLSDTGAVPARIHLMLDNNGLPSGDCFCEFRTSQEARQA 682
Query: 134 MSK 136
+K
Sbjct: 683 STK 685
>gi|60729607|pir||JC7925 nucleolin - common carp
gi|27804344|gb|AAO22235.1| nucleolin [Cyprinus carpio]
Length = 693
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 64 RPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVD 123
R G R V G + + + L F ANE + F V + V NGRP G A ++
Sbjct: 439 RQGSRTV----GQANKILVVNNLSFSANEESLQSVFEKAVSIRV--PQNNGRPKGFAFLE 492
Query: 124 FATHEDAMQAMSK-DRTNMQHRYIEL 148
F + EDA +A+ + T ++ R I L
Sbjct: 493 FESVEDAKEALENCNNTEIEGRSIRL 518
>gi|241957041|ref|XP_002421240.1| poly(A+) RNA-binding protein, putative; single-strand telomeric
DNA-binding protein, putative [Candida dubliniensis
CD36]
gi|223644584|emb|CAX40572.1| poly(A+) RNA-binding protein, putative [Candida dubliniensis CD36]
Length = 460
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 45 RGGFNNDRWNDR-PGGFAGPRPG---GRWVNESSGPSR--------HTVHMRGLPFRANE 92
R + NDR D G + G R G GR + S R +++ + +PF
Sbjct: 79 RPSYGNDRRRDHGRGSYGGGRNGRDYGRSIATSDADYRSKTERNFDNSIFIGNIPFDCTS 138
Query: 93 RDVADFFRP-VVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFL 150
RD+ D F+ V DI GR G A V+F + +D +A++K DR ++R E+F+
Sbjct: 139 RDIEDIFKKDFSIVRADIVTNKGRSRGMATVEFNSKDDVREAINKFDR--FEYRGREIFV 196
Query: 151 NSSSP 155
P
Sbjct: 197 RQDYP 201
>gi|367020140|ref|XP_003659355.1| hypothetical protein MYCTH_2296269 [Myceliophthora thermophila ATCC
42464]
gi|347006622|gb|AEO54110.1| hypothetical protein MYCTH_2296269 [Myceliophthora thermophila ATCC
42464]
Length = 534
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAM 131
P T+ + LPF A+E V+ FF V + E+GRP G A V F++ EDA
Sbjct: 397 SPESDTLFVGNLPFSADEDSVSKFFNKAAKVQSLRIPTDQESGRPKGFAYVTFSSVEDAK 456
Query: 132 QAM 134
+A
Sbjct: 457 KAF 459
>gi|331246414|ref|XP_003335840.1| RNP domain-containing protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 510
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 66 GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYE-NGRPSGEADVD 123
GGR G S + + GLPF +D+ D FR + D++++ +G P+G V
Sbjct: 258 GGRSSFSEGGQSCKQLSISGLPFNVGWQDLKDMFRSAGSIIRADVYFDADGSPTGNGTVI 317
Query: 124 FATHEDAMQAMS 135
F T DA A+S
Sbjct: 318 FETSRDAQNAIS 329
>gi|298707925|emb|CBJ30311.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 351
Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 80 TVHMRGLPFRANERDVADFFR---PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
TV++ G+P+ +E DV +FF+ + V + ++GRP G A V FA A A +
Sbjct: 130 TVYVEGIPWTCDESDVREFFKGCGKITDVRMPRWQDSGRPRGYAHVAFAGSSGARAAFGR 189
Query: 137 DRTNMQHRYIEL 148
D + RY+ +
Sbjct: 190 DGQYLNGRYLTV 201
>gi|320163441|gb|EFW40340.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 468
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 86 LPFRANERDVADFFRPVVPVHVDI---HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQ 142
LPF AN D+ADFFR + I RP G A V+F D + A+ + +
Sbjct: 186 LPFDANRDDIADFFRDLNIKETRILGPREGEQRPRGIAYVEFGDANDLVAAIDRQGQELH 245
Query: 143 HRYIELFLNSSSPRGGVGGSGSIGGF 168
R + + + GS S GGF
Sbjct: 246 GRQLRINVAEGQRSNNASGSSSRGGF 271
>gi|116831499|gb|ABK28702.1| unknown [Arabidopsis thaliana]
Length = 237
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 45 RGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFR---P 101
R G++++R +RP +ESSGPS + +R LP A D+ D F P
Sbjct: 24 RKGYDDNRLRERPSS---------RDHESSGPS--GLLIRNLPLDARPNDLRDSFERFGP 72
Query: 102 VVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYI 146
+ +++ +Y G P G V + EDA +AM + M H+ I
Sbjct: 73 LKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKR----MNHKVI 113
>gi|26452521|dbj|BAC43345.1| putative Serine/arginine rich protein [Arabidopsis thaliana]
Length = 236
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 45 RGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFR---P 101
R G++++R +RP +ESSGPS + +R LP A D+ D F P
Sbjct: 24 RKGYDDNRLRERPSS---------RDHESSGPS--GLLIRNLPLDARPNDLRDSFERFGP 72
Query: 102 VVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYI 146
+ +++ +Y G P G V + EDA +AM + M H+ I
Sbjct: 73 LKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKR----MNHKVI 113
>gi|30687014|ref|NP_197382.3| SC35-like splicing factor 28 [Arabidopsis thaliana]
gi|91806878|gb|ABE66166.1| 28 kDa SC35-like splicing factor [Arabidopsis thaliana]
gi|332005232|gb|AED92615.1| SC35-like splicing factor 28 [Arabidopsis thaliana]
Length = 236
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 45 RGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFR---P 101
R G++++R +RP +ESSGPS + +R LP A D+ D F P
Sbjct: 24 RKGYDDNRLRERPSS---------RDHESSGPS--GLLIRNLPLDARPNDLRDSFERFGP 72
Query: 102 VVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYI 146
+ +++ +Y G P G V + EDA +AM + M H+ I
Sbjct: 73 LKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKR----MNHKVI 113
>gi|332016673|gb|EGI57527.1| RNA and export factor-binding protein 2 [Acromyrmex echinatior]
Length = 250
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 23 ANRFGGGSGPGPIRGGPPRGGF---RGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRH 79
R GG G RGG R RG N+ +D F G + GR S+G ++
Sbjct: 46 VQRASGGVMRGRNRGGIARSSLPYTRGDVNSAWKHDM---FDGVKKVGRGAIGSAGTTKL 102
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH-VDIHYE-NGRPSGEADVDFATHEDAMQAMSK 136
V L F ++ D+ + F P+ +HY+ +GR G ADV F DA++AM +
Sbjct: 103 LVS--NLDFGVSDSDIQELFSEFGPLKSAAVHYDRSGRSLGSADVIFERRADAIKAMKQ 159
>gi|426195444|gb|EKV45374.1| hypothetical protein AGABI2DRAFT_120330 [Agaricus bisporus var.
bisporus H97]
Length = 399
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSK 136
+ +++ LP++A +D+ D FR + DI+ +GRP G V F T +DA QA+S+
Sbjct: 113 NQLYVGNLPYQAGWQDLKDLFRNAGSIIRADINIGADGRPKGSGTVVFETVKDAQQAISQ 172
Query: 137 D 137
D
Sbjct: 173 D 173
>gi|367043706|ref|XP_003652233.1| hypothetical protein THITE_2113488 [Thielavia terrestris NRRL 8126]
gi|346999495|gb|AEO65897.1| hypothetical protein THITE_2113488 [Thielavia terrestris NRRL 8126]
Length = 533
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQ 132
P T+ + L F ANE V+ FF V V + E+GRP G A V F++ +DA
Sbjct: 390 PESDTLFVGNLSFSANEESVSAFFNKVAKVQSLRIPTDQESGRPKGFAYVTFSSVDDAKA 449
Query: 133 AM 134
A
Sbjct: 450 AF 451
>gi|303310955|ref|XP_003065489.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240105151|gb|EER23344.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 439
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPVVPVH-VDIHYE-NGRPSGEADVDFATHEDAMQ 132
G T+++R LP+ D+ + F + V +I YE NGR G V F T E+A
Sbjct: 333 GERSATIYVRNLPWSTCNEDLVELFSTIGKVERAEIQYEANGRSRGTGVVQFDTVENAET 392
Query: 133 AMSK 136
A+SK
Sbjct: 393 AISK 396
>gi|392862747|gb|EAS36587.2| RNP domain-containing protein [Coccidioides immitis RS]
Length = 473
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH-VDIHYE-NGRPSGEADVDFATHEDAMQAMSK 136
T+++R LP+ D+ + F + V +I YE NGR G V F T E+A A+SK
Sbjct: 372 TIYVRNLPWSTCNEDLVELFSTIGKVERAEIQYEANGRSRGTGVVQFDTVENAETAISK 430
>gi|320031479|gb|EFW13442.1| hypothetical protein CPSG_09988 [Coccidioides posadasii str.
Silveira]
Length = 382
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 75 GPSRHTVHMRGLPFRANERDVADFFRPVVPVH-VDIHYE-NGRPSGEADVDFATHEDAMQ 132
G T+++R LP+ D+ + F + V +I YE NGR G V F T E+A
Sbjct: 276 GERSATIYVRNLPWSTCNEDLVELFSTIGKVERAEIQYEANGRSRGTGVVQFDTVENAET 335
Query: 133 AMSK 136
A+SK
Sbjct: 336 AISK 339
>gi|238883218|gb|EEQ46856.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 465
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 79 HTVHMRGLPFRANERDVADFFRP-VVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK- 136
+++ + +PF RD+ D F+ V DI GR G A V+F + +D +A++K
Sbjct: 128 NSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNKGRSRGMATVEFNSKDDVREAINKF 187
Query: 137 DRTNMQHRYIELFLNSSSP 155
DR ++R E+F+ P
Sbjct: 188 DR--YEYRGREIFVRQDYP 204
>gi|357472739|ref|XP_003606654.1| THO complex subunit [Medicago truncatula]
gi|355507709|gb|AES88851.1| THO complex subunit [Medicago truncatula]
Length = 376
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 27/182 (14%)
Query: 21 GGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRWNDR--PGGFAGPRPGG 67
GG +R G SGPGP R R G R + +D + D+ GG
Sbjct: 139 GGRSRPGPASGPGPARRILNRAGNRAAPYSAAKAPETTWQHDLYADQHVAAAAYPAAQGG 198
Query: 68 RWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVD-IHYE-NGRPSGEADVDFA 125
R + +G +++ L + + D+ + F V + +HY+ +GR G A+V F+
Sbjct: 199 RAPSIETGTK---LYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFS 255
Query: 126 THEDAMQAMSKDRTNMQH----RYIELF-LNSSSPRGGVGGSGSIGGFGG---SGGGRLG 177
+DA+ A+ K N+Q IE+ N S+P + IG F G SG GR+G
Sbjct: 256 RRQDAVAAV-KRYNNVQLDGKPMKIEIVGTNISTPGAAPVVNAPIGNFNGIPQSGQGRVG 314
Query: 178 GF 179
F
Sbjct: 315 EF 316
>gi|340914665|gb|EGS18006.1| hypothetical protein CTHT_0060190 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 539
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQ 132
P T+ + L F A E V++FF V V + E+GRP G A V F + EDA
Sbjct: 407 PESDTLFVGNLSFNATEESVSEFFNSVAAVQSLRIPTDQESGRPKGFAYVTFNSVEDAKT 466
Query: 133 AMSK 136
A ++
Sbjct: 467 AFNQ 470
>gi|260841409|ref|XP_002613908.1| hypothetical protein BRAFLDRAFT_160958 [Branchiostoma floridae]
gi|229299298|gb|EEN69917.1| hypothetical protein BRAFLDRAFT_160958 [Branchiostoma floridae]
Length = 152
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAM-SKDR 138
T+ +R L + + + + + F V V + I ++GRP G VDF + E A +AM S ++
Sbjct: 4 TLFLRNLSYDSTKESIMEVFTDAVDVRIPIFKDSGRPKGFGYVDFESEEAAKEAMDSMNQ 63
Query: 139 TNMQHRYI 146
+ + R I
Sbjct: 64 SELDGRTI 71
>gi|432873995|ref|XP_004072420.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein EWS-like
[Oryzias latipes]
Length = 612
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 14/78 (17%)
Query: 58 GGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVD--------- 108
GGF+ +PGGR E T+++ GL +AN ++A+FF+ V P+ ++
Sbjct: 298 GGFS--KPGGR-PEEQDDSENSTIYITGLTEKANLEEMAEFFKHVGPIRMNRRLGQPAIN 354
Query: 109 --IHYENGRPSGEADVDF 124
E+G+P G+A + +
Sbjct: 355 IYTDKESGKPKGDATLSY 372
>gi|119194811|ref|XP_001248009.1| hypothetical protein CIMG_01780 [Coccidioides immitis RS]
Length = 464
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH-VDIHYE-NGRPSGEADVDFATHEDAMQAMSK 136
T+++R LP+ D+ + F + V +I YE NGR G V F T E+A A+SK
Sbjct: 363 TIYVRNLPWSTCNEDLVELFSTIGKVERAEIQYEANGRSRGTGVVQFDTVENAETAISK 421
>gi|326926008|ref|XP_003209198.1| PREDICTED: nucleolin-like [Meleagris gallopavo]
Length = 425
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAM-SKD 137
T+ + L + A+E + + F+ + + GRP G A V+F T EDA +A+ S +
Sbjct: 201 KTLIVNNLSYAASEETLQELFKKATSIKMP-QNNQGRPKGYAFVEFPTAEDAKEALNSCN 259
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGF 168
T ++ R I L SSP G + GGF
Sbjct: 260 NTEIEGRAIRLEF--SSPSWQKGNMNARGGF 288
>gi|322704001|gb|EFY95601.1| RNA recognition motif containing protein [Metarhizium anisopliae
ARSEF 23]
Length = 555
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
T H+ L + A V +FF VV V + E RP G V+FA E +A++ D
Sbjct: 84 TAHLGNLAYDATNESVTEFFEGCEVVSVRIIEDREMQRPKGFGYVEFADIEGLKKALTLD 143
Query: 138 RTNMQHRYIELFLNSSSPRGG 158
+ R I++ + + PRGG
Sbjct: 144 GESFNGRMIKIKI-ADPPRGG 163
>gi|322692273|gb|EFY84203.1| RNA recognition motif containing protein [Metarhizium acridum CQMa
102]
Length = 552
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 80 TVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
T H+ L + A V +FF +V V + E RP G V+FA E +A++ D
Sbjct: 80 TAHLGNLAYDATNETVTEFFEGCEIVSVRIIEDREMQRPKGFGYVEFADIEGLKKALTLD 139
Query: 138 RTNMQHRYIELFLNSSSPRGG 158
+ R I++ + + PRGG
Sbjct: 140 GESFNGRMIKIKI-ADPPRGG 159
>gi|74136059|ref|NP_001027962.1| nucleolin like protein CiRGG1 [Ciona intestinalis]
gi|6178156|dbj|BAA86200.1| nucleolin like protein CiRGG1 [Ciona intestinalis]
Length = 529
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 52 RWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY 111
+ DR G FA R + T+ ++ LP+ A+E +A+ F V V +
Sbjct: 261 KAQDRKGDFASNR---------NDKDERTLFVKNLPYSADENAIAELFDGVKEVRLLTDR 311
Query: 112 ENGRPSGEADVDFATHEDAMQAM-SKDRTNMQHRYIEL 148
E+GRP G A ++F + + A KD M R + L
Sbjct: 312 ESGRPKGMAFIEFDSTAEKETAFGLKDELEMDGRSLYL 349
>gi|345315973|ref|XP_001509329.2| PREDICTED: nucleolin-like, partial [Ornithorhynchus anatinus]
Length = 638
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDA 130
N SG S+ T+ + L + A E + + F + V +++ GRP G A V+F+T E+A
Sbjct: 429 NAWSGESK-TIVVNNLAYSATEEGLQEVFEKATSIKVPQNHQ-GRPKGYAFVEFSTPEEA 486
Query: 131 MQAM-SKDRTNMQHRYIELFLNSSSPRGGVGG 161
+A+ S + ++ R I L + S GG
Sbjct: 487 KEALNSLNNVEIEGRTIRLEMQGSKNTNARGG 518
>gi|363754371|ref|XP_003647401.1| hypothetical protein Ecym_6201 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891038|gb|AET40584.1| hypothetical protein Ecym_6201 [Eremothecium cymbalariae
DBVPG#7215]
Length = 448
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFR---PVVPVHVDIHYENGRPSGEADVDFATHEDA 130
S PS T+ + L F A+ ++ + F+ ++ V + H E +P G V +A+ E+A
Sbjct: 308 SQPS-DTLFLGNLSFNADRDNIFELFKDYGSIISVRIPTHPETNQPKGFGYVQYASIEEA 366
Query: 131 MQAMSKDRTNMQHRYIE---LFLNSSSPR 156
+A+ K +Q YI+ + L+ SSPR
Sbjct: 367 QKALDK----LQGEYIDNRPVRLDFSSPR 391
>gi|399219070|emb|CCF75957.1| unnamed protein product [Babesia microti strain RI]
Length = 248
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRP---VVPVHVDIHYENGRPSGEADVDFATHED 129
+ P + + +R + ++ E + + F V+ H+ ++ + G+P G + F + E+
Sbjct: 97 TDNPPSNEICVRNINYKTTEDTMRELFSECGQVIRCHIPVYEDTGKPLGRCFISFGSVEE 156
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSP 155
A +A+ D T + R + F+ ++P
Sbjct: 157 ASKALEYDNTEIDGRTV--FITYATP 180
>gi|405978215|gb|EKC42625.1| Myelin expression factor 2 [Crassostrea gigas]
Length = 468
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH-VDIHYENGRPSGEADVDFATHEDAM 131
S+ P TV +R LP+ +D+ + F+ V V +I ENGR +G V F +DA
Sbjct: 380 STRPDNCTVCVRNLPYSLKWQDLKEKFKAVADVRFAEIKMENGRSAGWGLVRFGNPDDAQ 439
Query: 132 QAM 134
+A+
Sbjct: 440 RAI 442
>gi|116180414|ref|XP_001220056.1| hypothetical protein CHGG_00835 [Chaetomium globosum CBS 148.51]
gi|88185132|gb|EAQ92600.1| hypothetical protein CHGG_00835 [Chaetomium globosum CBS 148.51]
Length = 475
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQ 132
P T+ + LPF A+E V+++F V V + E+GRP G A V F++ +DA +
Sbjct: 323 PPSDTLFVGNLPFSADESSVSNYFNEVAQVQSLRIPTDQESGRPKGFAYVTFSSIDDAKK 382
Query: 133 AM 134
Sbjct: 383 VF 384
>gi|168035835|ref|XP_001770414.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678291|gb|EDQ64751.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 776
Score = 37.7 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPV-HVDIHYENG--RPSGEADVDFATHEDAMQAMSK 136
T + + F E D+ +FF P V V I E G RP G A VDF E A++K
Sbjct: 607 TAFLSNVAFEVTEEDLKEFFSPSSRVKEVRILRERGTARPRGLAYVDFEDEESLTAAIAK 666
Query: 137 DRTNMQHRYIELFLNSSSPR 156
++ ++ R +L + S P+
Sbjct: 667 NKEELKGR--QLSIARSDPK 684
>gi|410921714|ref|XP_003974328.1| PREDICTED: nucleolin-like isoform 2 [Takifugu rubripes]
Length = 672
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
SG + T+ + L F A E + F + I +GRP G A V+F T DA A
Sbjct: 418 SGAASKTLIVNNLAFSATEDVLQSTFEKATSIR--IPQRDGRPKGFAFVEFETVNDATDA 475
Query: 134 MSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIG 166
+ + T+++ R I L + +S RG GG G+ G
Sbjct: 476 LENFNNTDIEGRSIRLEYSQNSGRGD-GGRGNAG 508
>gi|12323574|gb|AAG51767.1|AC066691_7 RNA and export factor binding protein, putative; 38196-36208
[Arabidopsis thaliana]
Length = 282
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH-VDIHYE-NGRPSGEADVDFATHEDAMQAMSK 136
TV++ L D+ + + + + IHY+ NGRPSG A+V + DA+QAM K
Sbjct: 95 TVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRK 153
>gi|254431254|ref|ZP_05044957.1| RNA-binding region RNP-1 [Cyanobium sp. PCC 7001]
gi|197625707|gb|EDY38266.1| RNA-binding region RNP-1 [Cyanobium sp. PCC 7001]
Length = 169
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRP---VVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
++ + LPFRA + DVA+ F P VV + + + GR G A V+ A E +A+
Sbjct: 2 SIFVGNLPFRAEQEDVAELFAPFGEVVSCALPLERDTGRKRGFAFVEMADPEAESRAIEA 61
Query: 137 DR-TNMQHRYIELFLNSSSPRGGV 159
+ + + R L +N + PRG
Sbjct: 62 LQGSELMGR--PLRINKAEPRGAA 83
>gi|453084886|gb|EMF12930.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 490
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH-VDIHYE-NGRPSGEADVDFATHEDA 130
S G + +H++ LP+ + D+ + F+ + V +I YE NGR G V F+ DA
Sbjct: 387 SGGEANPIIHVKNLPWSTSNEDLVELFQTIGTVERAEIQYEPNGRSRGSGVVQFSNTSDA 446
Query: 131 MQAMSK 136
++ K
Sbjct: 447 QTSIEK 452
>gi|302411083|ref|XP_003003375.1| translation initiation factor 4B [Verticillium albo-atrum VaMs.102]
gi|261358399|gb|EEY20827.1| translation initiation factor 4B [Verticillium albo-atrum VaMs.102]
Length = 395
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 79 HTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+T H+ L + A V +FF ++ V + E RP G A +FAT + +A+
Sbjct: 119 YTAHLGNLSYDATNDTVNEFFAGCEIISVRIIEDREQMRPKGFAYAEFATLDGLKKALEL 178
Query: 137 DRTNMQHRYIELFLNSSSPRGGVGG 161
D N Q R I + + G GG
Sbjct: 179 DGENFQGRTIRVKIADPPRNDGRGG 203
>gi|410921712|ref|XP_003974327.1| PREDICTED: nucleolin-like isoform 1 [Takifugu rubripes]
Length = 680
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
SG + T+ + L F A E + F + I +GRP G A V+F T DA A
Sbjct: 432 SGAASKTLIVNNLAFSATEDVLQSTFEKATSIR--IPQRDGRPKGFAFVEFETVNDATDA 489
Query: 134 MSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIG 166
+ + T+++ R I L + +S RG GG G+ G
Sbjct: 490 LENFNNTDIEGRSIRLEYSQNSGRGD-GGRGNAG 522
>gi|395324355|gb|EJF56797.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 382
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+ +++ LP++A +D+ D FR + DI+ +GRP G V F T +DA QA+S
Sbjct: 108 NQLYVGNLPYQAGWQDLKDLFRSAGNIIRADINIGADGRPKGSGTVIFETAKDAQQAIS 166
>gi|254585491|ref|XP_002498313.1| ZYRO0G07326p [Zygosaccharomyces rouxii]
gi|238941207|emb|CAR29380.1| ZYRO0G07326p [Zygosaccharomyces rouxii]
Length = 468
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRP---VVPVHVDIHYENGRPSGEADVDFATHEDA 130
S PS T+ + L F A+ + + F P V+ V + H E +P G V +A+ + A
Sbjct: 333 SEPS-DTLFLGNLSFNADRDQIYELFSPHGEVISVRIPTHPETEQPKGFGYVQYASVDSA 391
Query: 131 MQAMSKDRTNMQHRYIE---LFLNSSSPRGGVGG 161
+A+ +Q YI+ + L+ S+P+ G GG
Sbjct: 392 QKALE----TLQGEYIDNRPVRLDFSTPKTGNGG 421
>gi|299741815|ref|XP_001832059.2| RNP domain-containing protein [Coprinopsis cinerea okayama7#130]
gi|298404895|gb|EAU89705.2| RNP domain-containing protein [Coprinopsis cinerea okayama7#130]
Length = 588
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 81 VHMRGLPFRANERDVADFFRPV-VPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+++ LP++A +D+ D FR V DI+ +GRP G V F T +DA QA+S
Sbjct: 306 LYVGNLPYQAGWQDLKDLFRAAGSIVRADINIGVDGRPKGSGTVVFETVKDAQQAIS 362
>gi|212534696|ref|XP_002147504.1| RNP domain protein [Talaromyces marneffei ATCC 18224]
gi|210069903|gb|EEA23993.1| RNP domain protein [Talaromyces marneffei ATCC 18224]
Length = 434
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH-VDIHYE-NGRPSGEADVDFATHEDA 130
S G +++R LP+ D+ D F + V +I YE NGR G V+F + E A
Sbjct: 326 SGGDKSAVIYVRNLPWSTCNEDLVDLFTTIGKVERAEIQYEGNGRSRGTGVVEFDSPETA 385
Query: 131 MQAMSK 136
A+SK
Sbjct: 386 ETAISK 391
>gi|357619208|gb|EHJ71878.1| ALY [Danaus plexippus]
Length = 253
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 41 RGGFRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFR 100
RG + +D +ND R R V ++GP++ V L F ++ D+ + F
Sbjct: 66 RGDVNSTWKHDMYND-----FNDRKIQRSVPLTTGPTKLLVS--NLDFGVSDSDIQELFS 118
Query: 101 PV-VPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSK 136
+ +HY+ +GR G ADV F DA++AM +
Sbjct: 119 EFGILKSAAVHYDRSGRSLGTADVLFERRADALKAMKQ 156
>gi|196007906|ref|XP_002113819.1| hypothetical protein TRIADDRAFT_57615 [Trichoplax adhaerens]
gi|190584223|gb|EDV24293.1| hypothetical protein TRIADDRAFT_57615 [Trichoplax adhaerens]
Length = 575
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140
+ ++ L + E + F+ V + E G+P G A +DF E A SK N
Sbjct: 442 LFVKNLSYNTTEETLQKLFKDCKNVRIATDRETGKPRGFAHIDFYDSE----ATSKALKN 497
Query: 141 MQHRYIE---LFLN 151
MQ++ I+ +FL+
Sbjct: 498 MQNKSIDGRNIFLD 511
>gi|432843262|ref|XP_004065594.1| PREDICTED: THO complex subunit 4-A-like [Oryzias latipes]
Length = 251
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 62 GPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYE-NGRPSGE 119
GPR ++S G S + + L F ++ D+ D F IHY+ +GR G
Sbjct: 83 GPRAQSPEADDSFGGSSSKLLISNLDFGVSDSDIKDLFEEFGTLKKASIHYDRSGRSKGV 142
Query: 120 ADVDFATHEDAMQAM 134
A+V F DA++AM
Sbjct: 143 AEVHFVNKADALKAM 157
>gi|170057361|ref|XP_001864450.1| heterogeneous nuclear ribonucleoprotein [Culex quinquefasciatus]
gi|167876772|gb|EDS40155.1| heterogeneous nuclear ribonucleoprotein [Culex quinquefasciatus]
Length = 1174
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDI---HYENGRPSGEADVDFATHEDAMQAMSK 136
+ M LPFRA D+ DFF+ D+ + +GR +G+A V F + +DA +A+
Sbjct: 1098 ILSMGNLPFRARNEDIVDFFKQYNITLDDVKRRYLPDGRSTGDAMVRFQSPQDAHRAL-- 1155
Query: 137 DRTNMQHR 144
T+ Q R
Sbjct: 1156 -ETHQQMR 1162
>gi|392561626|gb|EIW54807.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 415
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRP---VVPVHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
+ +++ LP++A +D+ D FR ++ ++I +GRP G V F T +DA QA+S
Sbjct: 140 NQLYVGNLPYQAGWQDLKDLFRSAGNIIRADINIGL-DGRPKGSGTVIFETAKDAQQAIS 198
>gi|167535939|ref|XP_001749642.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771790|gb|EDQ85451.1| predicted protein [Monosiga brevicollis MX1]
Length = 948
Score = 37.0 bits (84), Expect = 5.9, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 18/106 (16%)
Query: 51 DRWNDRPGGFAGPRPGGRWVNESSGPSRHTV--HMRGLPFRANERDVADFFRP--VVPVH 106
D WND +W + S T+ +RGLP+ + DV DF +P + +
Sbjct: 648 DTWNDLL----------KWYQDQLLRSTDTLVARLRGLPWSCSRDDVYDFLQPSGINANN 697
Query: 107 VDI-HYENGRPSGEADVDFATHEDAM---QAMSKDRTNMQHRYIEL 148
V + H NGRP+G A F+ + AM + ++ + RYIE+
Sbjct: 698 VFVCHALNGRPTGTAYAVFSGSTASQCFDLAMRQHKSKIGDRYIEV 743
Score = 37.0 bits (84), Expect = 7.3, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 67 GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRP--VVPVHVDIHYENGRPSGEADVDF 124
R +++ + + + GLP + D+ +F P V+ V ++ + E GR G+A V
Sbjct: 560 ARALSKDAANDSQYLSVHGLPLDTTKHDLEEFMAPAQVLDVMLECNPE-GRCEGKACVLV 618
Query: 125 ATHEDAMQAMSKDRTNMQHRYIELFLNSS 153
T EDA A+ K++T + R +++ + ++
Sbjct: 619 CTPEDARLALEKNKTEFKGRSVDIEMGTA 647
>gi|171687819|ref|XP_001908850.1| hypothetical protein [Podospora anserina S mat+]
gi|170943871|emb|CAP69523.1| unnamed protein product [Podospora anserina S mat+]
Length = 459
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQ 132
P T+ + LPF A+E V+ FF V V + E+GRP G A V F + +DA
Sbjct: 314 PPSDTLFVGNLPFSADEDGVSAFFNEVAKVQSLRIPTDMESGRPKGFAYVSFYSIDDAKN 373
Query: 133 AMSK 136
A +
Sbjct: 374 AFEQ 377
>gi|328715828|ref|XP_001946054.2| PREDICTED: hypothetical protein LOC100165002 [Acyrthosiphon pisum]
Length = 1148
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++ LP+ AN D+ +F+ + +H G G+ + F+T EDA QAM D
Sbjct: 4 IIRLQNLPWAANAADIRQYFQGLSIPEGGVHIVGGE-KGDVFISFSTDEDARQAMLSDGG 62
Query: 140 NMQHRYIELFLNS 152
++ I L L+S
Sbjct: 63 CIKDVQIRLLLSS 75
>gi|322793642|gb|EFZ17092.1| hypothetical protein SINV_14629 [Solenopsis invicta]
Length = 256
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 10/114 (8%)
Query: 28 GGSGPGPIRGGPPRGGF---RGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMR 84
GG G RGG R RG N+ +D F G + GR ++G ++ V
Sbjct: 56 GGVMRGRSRGGIARSSLPYTRGDVNSAWKHDM---FDGVKKVGRGAIGNAGTTKLLVS-- 110
Query: 85 GLPFRANERDVADFFRPVVPVH-VDIHYE-NGRPSGEADVDFATHEDAMQAMSK 136
L F ++ D+ + F P+ +HY+ +GR G ADV F DA++AM +
Sbjct: 111 NLDFGVSDSDIQELFSEFGPLKSAAVHYDRSGRSLGSADVIFERRADAIKAMKQ 164
>gi|195498869|ref|XP_002096710.1| aly [Drosophila yakuba]
gi|194182811|gb|EDW96422.1| aly [Drosophila yakuba]
Length = 266
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 17 NDRFGGANRFGGGSGPGPIRGGPPRGGFRGGFN----------NDRWNDRPGGFAGPRPG 66
N R GGA+ G PG GP RGG GG N W + GP+ G
Sbjct: 44 NARRGGASAGGSPRKPGSALKGP-RGGVAGGAVQKAKFPRGDVNSAWKHDM--YDGPKRG 100
Query: 67 GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH-VDIHYE-NGRPSGEADVDF 124
V SGP+R V L + + D+ + F P+ +HY+ +GR G ADV F
Sbjct: 101 A--VGGGSGPTRLIVG--NLDYGVSNTDIKELFNDFGPMKKAAVHYDRSGRSLGTADVIF 156
Query: 125 ATHEDAMQAMSK 136
DA++A+ +
Sbjct: 157 ERRADALKAIKQ 168
>gi|301119623|ref|XP_002907539.1| nucleolin, putative [Phytophthora infestans T30-4]
gi|262106051|gb|EEY64103.1| nucleolin, putative [Phytophthora infestans T30-4]
Length = 496
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH-VDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLP+ A E +V + F V I +NGR SG A V FAT E A A++ D
Sbjct: 251 IFIAGLPWSATEDEVKEHFAGCGEVTGARIPLQNGRSSGTAFVTFATSEAAEAALAMDGQ 310
Query: 140 NMQHRYIEL 148
+ R++++
Sbjct: 311 DFGGRWMKI 319
>gi|37522099|ref|NP_925476.1| RNA-binding protein [Gloeobacter violaceus PCC 7421]
gi|35213098|dbj|BAC90471.1| RNA-binding protein [Gloeobacter violaceus PCC 7421]
Length = 123
Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 80 TVHMRGLPFRANERDVADFFR---PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
TV + LPF E+D+ + F V V + E GRP G A V+ A E+A S
Sbjct: 2 TVFVGNLPFSVTEQDITEAFSEYGTVKSVKIPTDRETGRPRGFAFVEMADEEEAKVIESL 61
Query: 137 DRTNMQHRYIELFLNSSSPR 156
D +R I +N + PR
Sbjct: 62 DGATWDNRQIR--VNKAEPR 79
>gi|21356157|ref|NP_651968.1| RNA and export factor binding protein 1 [Drosophila melanogaster]
gi|5679350|gb|AAD46930.1|AF172637_1 LD24793p [Drosophila melanogaster]
gi|7298863|gb|AAF54070.1| RNA and export factor binding protein 1 [Drosophila melanogaster]
gi|220953584|gb|ACL89335.1| Aly-PA [synthetic construct]
Length = 266
Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 33/142 (23%)
Query: 17 NDRF-GGANRFGGGSG-----PGPIRGGP--------------PRGGFRGGFNNDRWNDR 56
RF GGA R G +G PG + GP PRG + +D ++
Sbjct: 38 QQRFAGGARRGGANAGGSPRKPGSVLKGPRGGVAAGAVQKAKFPRGDVNSAWKHDMYD-- 95
Query: 57 PGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPV-HVDIHYE-NG 114
GP+ G V SGP+R V L + + D+ + F P+ +HY+ +G
Sbjct: 96 -----GPKRGA--VGGGSGPTRLIVG--NLDYGVSNTDIKELFNDFGPIKKAAVHYDRSG 146
Query: 115 RPSGEADVDFATHEDAMQAMSK 136
R G ADV F DA++A+ +
Sbjct: 147 RSLGTADVIFERRADALKAIKQ 168
>gi|226293434|gb|EEH48854.1| RNP domain-containing protein [Paracoccidioides brasiliensis Pb18]
Length = 478
Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH-VDIHYE-NGRPSGEADVDFATHEDA 130
S G + +R LP+ D+ D F + V +I YE NGR G V+F + E+A
Sbjct: 371 SGGERSAIIFVRNLPWSTCNEDLVDLFSTIGKVERAEIQYEPNGRSRGTGVVEFDSVENA 430
Query: 131 MQAMSK 136
A++K
Sbjct: 431 ETAINK 436
>gi|443898591|dbj|GAC75925.1| FOG: RRM domain [Pseudozyma antarctica T-34]
Length = 593
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 73 SSGPS----RHTVHMRGLPFRANERDVADFFRPVVPV-HVDIHYENGRPSGEADVDFATH 127
SSGP+ + ++ LP+ + D+ + F+ V +I +E GR G V FA+
Sbjct: 471 SSGPTPTAPSQQIFVKNLPWSTSNEDLVELFQTTGKVDEAEIMFEGGRSKGCGVVQFASV 530
Query: 128 EDAMQAMSK 136
+DA A++K
Sbjct: 531 QDAETAIAK 539
>gi|241152158|ref|XP_002406835.1| THO complex subunit, putative [Ixodes scapularis]
gi|215493941|gb|EEC03582.1| THO complex subunit, putative [Ixodes scapularis]
Length = 327
Score = 36.2 bits (82), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 13/131 (9%)
Query: 51 DRW-NDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPV-HVD 108
DRW +D G R G ++GPS+ V L + ++ D+ + F P+
Sbjct: 149 DRWQHDMFEGVGTRRTLGALGGTTAGPSKLLVS--NLDYGVSDADIKELFAEFGPLRKAA 206
Query: 109 IHYE-NGRPSGEADVDFATHEDAMQAMSKDR--------TNMQHRYIELFLNSSSPRGGV 159
+HY+ +GR G ADV F D+++AM + N+Q + + SP +
Sbjct: 207 VHYDRSGRSLGTADVVFERRTDSVRAMKQYNGVPLDGRPMNIQLVTSSVGAATLSPASRL 266
Query: 160 GGSGSIGGFGG 170
G + ++G GG
Sbjct: 267 GYAANVGNLGG 277
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.141 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,875,350,517
Number of Sequences: 23463169
Number of extensions: 273853541
Number of successful extensions: 2336749
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2820
Number of HSP's successfully gapped in prelim test: 7708
Number of HSP's that attempted gapping in prelim test: 1952987
Number of HSP's gapped (non-prelim): 331394
length of query: 232
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 94
effective length of database: 9,121,278,045
effective search space: 857400136230
effective search space used: 857400136230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 74 (33.1 bits)