BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3727
(232 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O35737|HNRH1_MOUSE Heterogeneous nuclear ribonucleoprotein H OS=Mus musculus
GN=Hnrnph1 PE=1 SV=3
Length = 449
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 380
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 381 LNSTAGASGGAYGSQMMGGMGLSNQSS 407
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens
GN=HNRNPH1 PE=1 SV=4
Length = 449
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 380
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 381 LNSTAGASGGAYGSQMMGGMGLSNQSS 407
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>sp|Q8VHV7|HNRH1_RAT Heterogeneous nuclear ribonucleoprotein H OS=Rattus norvegicus
GN=Hnrnph1 PE=1 SV=2
Length = 449
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 10 RPAPYDRNDRFGGANRFGGGSGPGPIRGGPPRGGFRGG-----------FNNDRW-NDRP 57
RP PYDR G N G G+G +R G GG+ G F +DR+ D
Sbjct: 206 RPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLN 265
Query: 58 GGFAGPRP-----GGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
F+G GG ++G H VHMRGLP+RA E D+ +FF P+ PV V I
Sbjct: 266 YCFSGMSDHRYGDGGSTFQSTTG---HCVHMRGLPYRATENDIYNFFSPLNPVRVHIETG 322
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS--------- 162
+GR +GEADV+FATHEDA+ AMSKD+ NMQHRY+ELFLNS++ G GG+
Sbjct: 323 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGAYEHRYVELF 380
Query: 163 --GSIGGFGGSGGGR-LGGFGGSDPSS 186
+ G GG+ G + +GG G S+ SS
Sbjct: 381 LNSTAGASGGAYGSQMMGGMGLSNQSS 407
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF +E ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELF 149
KDR M HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>sp|Q5E9J1|HNRPF_BOVIN Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF
PE=2 SV=3
Length = 414
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 95/165 (57%), Gaps = 25/165 (15%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-- 53
RP PYDR G A R+ G +G +R G G+ G GF D +
Sbjct: 206 RPGPYDRP---GTARRYIGIVKQAGLERMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGR 262
Query: 54 --NDRPGGFAGPRPG-GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIH 110
+ G R G G + +S+ + H VHMRGLP++A E D+ +FF P+ PV V I
Sbjct: 263 DLSYCLSGMYDHRYGDGEFTVQST--TGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIE 320
Query: 111 Y-ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++
Sbjct: 321 IGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F V VH I+ GR SGEA V+ + +D A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESEDDVKLA 70
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
>sp|Q794E4|HNRPF_RAT Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus
GN=Hnrnpf PE=1 SV=3
Length = 415
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 91/164 (55%), Gaps = 23/164 (14%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-- 53
RP PYDR G A R+ G +G +R G G+ G GF D +
Sbjct: 206 RPGPYDRP---GTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGR 262
Query: 54 --NDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY 111
+ G R G S + H VHMRGLP++A E D+ +FF P+ PV V I
Sbjct: 263 DLSYCLSGMYDHRYGDSEFTVQS-TTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEI 321
Query: 112 -ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++
Sbjct: 322 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
+ V +RGLP+ + DV +F V VH I+ GR SGEA V+ + +D
Sbjct: 11 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESEDDVKL 69
Query: 133 AMSKDRTNMQHRYIELF 149
A+ KDR +M HRYIE+F
Sbjct: 70 ALKKDRESMGHRYIEVF 86
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
>sp|Q9Z2X1|HNRPF_MOUSE Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf
PE=1 SV=3
Length = 415
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 91/164 (55%), Gaps = 23/164 (14%)
Query: 10 RPAPYDRNDRFGGANRFGG---GSGPGPIRGGPPRGGFRG-----------GFNNDRW-- 53
RP PYDR G A R+ G +G +R G G+ G GF D +
Sbjct: 206 RPGPYDRP---GTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGR 262
Query: 54 --NDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY 111
+ G R G S + H VHMRGLP++A E D+ +FF P+ PV V I
Sbjct: 263 DLSYCLSGMYDHRYGDSEFTVQS-TTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEI 321
Query: 112 -ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154
+GR +GEADV+FATHE+A+ AMSKDR NMQHRYIELFLNS++
Sbjct: 322 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 79 HTVHMRGLPFRANERDVADFFRP------VVPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
+ V +RGLP+ + DV +F V VH I+ GR SGEA V+ + +D
Sbjct: 11 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESEDDVKL 69
Query: 133 AMSKDRTNMQHRYIELF 149
A+ KDR +M HRYIE+F
Sbjct: 70 ALKKDRESMGHRYIEVF 86
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
>sp|Q8C5Q4|GRSF1_MOUSE G-rich sequence factor 1 OS=Mus musculus GN=Grsf1 PE=1 SV=2
Length = 479
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 76/112 (67%), Gaps = 4/112 (3%)
Query: 47 GFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH 106
F +D+ + P + P V+ + PS H VHMRGLPF+AN +D+ +FF P+ PV
Sbjct: 370 AFESDKEIELPKEMSEKLPEA--VDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVR 427
Query: 107 VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157
+ + Y + G+ +GEADV F THEDA+ AM KDR+++QHRYIELFLN S P+G
Sbjct: 428 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 478
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 310 REEIGNRYIEIF 321
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQA 133
+ + +GLP+ DV +FF + + IH+ +G+ G+A ++ + +D +A
Sbjct: 149 YLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKA 208
Query: 134 MSKDRTNMQHRYIELF 149
+ K R M RY+E++
Sbjct: 209 LEKHRMYMGQRYVEVY 224
>sp|Q6AY09|HNRH2_RAT Heterogeneous nuclear ribonucleoprotein H2 OS=Rattus norvegicus
GN=Hnrnph2 PE=1 SV=1
Length = 449
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 349 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 394
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>sp|Q5RD26|HNRH2_PONAB Heterogeneous nuclear ribonucleoprotein H2 OS=Pongo abelii
GN=HNRNPH2 PE=2 SV=1
Length = 449
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 349 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 394
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + E+ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>sp|P55795|HNRH2_HUMAN Heterogeneous nuclear ribonucleoprotein H2 OS=Homo sapiens
GN=HNRNPH2 PE=1 SV=1
Length = 449
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 349 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 394
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + E+ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>sp|Q3SZF3|HNRH2_BOVIN Heterogeneous nuclear ribonucleoprotein H2 OS=Bos taurus GN=HNRNPH2
PE=2 SV=1
Length = 449
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 349 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 394
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>sp|P70333|HNRH2_MOUSE Heterogeneous nuclear ribonucleoprotein H2 OS=Mus musculus
GN=Hnrnph2 PE=1 SV=1
Length = 449
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP+RA E D+ +FF P+ P+ V I +GR +GEADV+FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 138 RTNMQHRYIELFLNSSS-PRGGVGGSGSIGGFGGSGGGRLGGFGGS 182
+ NMQHRY+ELFLNS++ GG + F S G GG GS
Sbjct: 349 KANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGS 394
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 69 WVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGE 119
WV + +GP+ V +RGLPF ++ ++ FF +VP + + + GR +GE
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 154
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
A V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVD-----IHYENGRPSGEADVDFATHEDAMQAM 134
V +RGLP+ + +V FF + I+ GRPSGEA V+ + ++ A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 135 SKDRTNMQHRYIELFLNSS 153
KDR M HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>sp|P31942|HNRH3_HUMAN Heterogeneous nuclear ribonucleoprotein H3 OS=Homo sapiens
GN=HNRNPH3 PE=1 SV=2
Length = 346
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 76/123 (61%), Gaps = 19/123 (15%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
H VHMRGLPFRA E D+A+FF P+ P VH+DI +GR +GEADV+F THEDA+ AMSK
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIG-ADGRATGEADVEFVTHEDAVAAMSK 253
Query: 137 DRTNMQHRYIELFLNSS--------------SPRGGVGGSGSIGGFG--GSGGGRLGGFG 180
D+ NMQHRYIELFLNS+ R G+ G G G G G GG+G
Sbjct: 254 DKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYG 313
Query: 181 GSD 183
D
Sbjct: 314 TPD 316
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 69 WVNESSGP---SRHTVHMRGLPFRANERDVADFFR--PVVP--VHVDIHYENGRPSGEAD 121
WV + +GP S TV +RGLPF ++ ++ FF+ +VP + + + Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 122 VDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGG 158
V FA+ E A A+ K + + HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>sp|Q60HC3|HNRPF_MACFA Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis
GN=HNRNPF PE=2 SV=3
Length = 415
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP++A E D+ +FF P+ PV V I +GR +GEADV+FATHE+A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 138 RTNMQHRYIELFLNSSS 154
R NMQHRYIELFLNS++
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F VH I+ GR SGEA V+ + +D A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHF-IYTREGRQSGEAFVELGSEDDVKMA 70
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
>sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF
PE=1 SV=3
Length = 415
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMSKD 137
H VHMRGLP++A E D+ +FF P+ PV V I +GR +GEADV+FATHE+A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 138 RTNMQHRYIELFLNSSS 154
R NMQHRYIELFLNS++
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 60 FAGPRPGGRWVNESSGPSRHT------VHMRGLPFRANERDVADFFR--PVVPVHVDIHY 111
F R WV + SGP+ V +RGLPF + ++ FF +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 112 E-NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+ G+ +GEA V FA+ E A +A+ K + + HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAMQA 133
V +RGLP+ + DV +F VH I+ GR SGEA V+ + +D A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHF-IYTREGRQSGEAFVELGSEDDVKMA 70
Query: 134 MSKDRTNMQHRYIELF 149
+ KDR +M HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
>sp|Q12849|GRSF1_HUMAN G-rich sequence factor 1 OS=Homo sapiens GN=GRSF1 PE=1 SV=3
Length = 480
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ S H VHMRGLPF+AN +D+ +FF P+ PV + + Y + G+ +GEADV F THEDA+
Sbjct: 396 TTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVA 455
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRG 157
AM KDR+++ HRYIELFLN S P+G
Sbjct: 456 AMLKDRSHVHHRYIELFLN-SCPKG 479
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 TVHMRGLPFRANERDVADFF--RPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V +RGLP+ NE+D+ DFF +V + + Y R +GEA V F E A QA+ K
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 310
Query: 138 RTNMQHRYIELF 149
R + +RYIE+F
Sbjct: 311 REEIGNRYIEIF 322
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVD--IHY---ENGRPSGEADVDFATHEDAMQAMS 135
+ +GLP+ DV +FF + + IH+ +G+ G+A ++ + +D +A+
Sbjct: 152 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 211
Query: 136 KDRTNMQHRYIELF 149
K R M RY+E++
Sbjct: 212 KHRMYMGQRYVEVY 225
>sp|Q5ZLR4|ESRP2_CHICK Epithelial splicing regulatory protein 2 OS=Gallus gallus GN=ESRP2
PE=2 SV=1
Length = 701
Score = 60.1 bits (144), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ MRGLPF A + DV F P PV + + Y +GRP+G+A V F+ E A A+
Sbjct: 329 IRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNAL 388
Query: 135 SKDRTNMQHRYIELFLNSSS 154
K + + RYIELF ++++
Sbjct: 389 KKHKEILGKRYIELFRSTAA 408
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
++G R V +RGLP+ A D+ DF VH+ ++ + GRPSG+A + +
Sbjct: 441 ATGSIRDCVRLRGLPYTAGIDDILDFMGDATADIKPHGVHMVLN-QQGRPSGDAFIQMKS 499
Query: 127 HEDA-MQAMSKDRTNMQHRYIELF 149
+ A M A + M+ RY+E+F
Sbjct: 500 ADKAFMVAQKCHKKMMKDRYVEVF 523
Score = 42.4 bits (98), Expect = 0.003, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S + RGLP++++++D+A FF+ + + GR +GEA V F E A
Sbjct: 224 SETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLA 283
Query: 134 MSKDRTNMQHRYIELF 149
+ + + +M RYIE++
Sbjct: 284 LERHKHHMGSRYIEVY 299
>sp|Q7ZVR8|ESRP2_DANRE Epithelial splicing regulatory protein 2 OS=Danio rerio GN=esrp2
PE=2 SV=2
Length = 736
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ + MRGLPF A +DV F P PV + + Y +GRP+G+A V FA
Sbjct: 320 SKENQMIIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACE 379
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSS 154
E A A+ K + + RYIELF ++++
Sbjct: 380 EYAQNALKKHKQILGKRYIELFRSTAA 406
Score = 41.2 bits (95), Expect = 0.006, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S + RGLP++++++D+A FF+ + + GR +GEA V F E A
Sbjct: 222 SETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDMA 281
Query: 134 MSKDRTNMQHRYIELF 149
+ + + +M RYIE++
Sbjct: 282 LDRHKHHMGSRYIEVY 297
Score = 41.2 bits (95), Expect = 0.007, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRP----VVP--VHVDIHYENGRPSGEADVDFAT 126
++G +R + +RGLP+ A D+ +F + P VH+ ++ + GRPSG+A + +
Sbjct: 444 TTGNTRDCIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLN-QQGRPSGDAFIQMKS 502
Query: 127 HEDA-MQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
+ A M A + M+ RY+E+F S+ V G++ G S
Sbjct: 503 ADRAFMVAQKCHKKMMKDRYVEVFQCSTEEMSFVLMGGTLNRSGLS 548
Score = 30.8 bits (68), Expect = 7.2, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHYE-NGRPSGEADVDFATHEDAMQAMSK 136
V M+GLP+ A +D+ FF+ + V + Y +G+ SGEA V F + + A +A+++
Sbjct: 661 VRMQGLPYNAGVKDILSFFQGYQLQADSVLVLYNWSGQRSGEALVTFPSEKAARRAVAE 719
>sp|A1L1G1|ESRP1_DANRE Epithelial splicing regulatory protein 1 OS=Danio rerio GN=esrp1
PE=2 SV=1
Length = 714
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQA 133
V MRGLPF A V FF P PV + + + +GRP+G+A V F+ E A A
Sbjct: 327 IVRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNA 386
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGV 159
+ K + + RYIELF ++++ V
Sbjct: 387 LKKHKDMLGKRYIELFKSTAAEVQQV 412
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFF------RPVVPVHVDIHYENGRPSGEADVDFATHEDAM 131
R V +RGLP+ A+ +D+ F VH+ ++++ GRPSGEA + + E A
Sbjct: 449 RDCVRLRGLPYDASIQDILVFLGEYGADIKTHGVHMVLNHQ-GRPSGEAFIQMRSAERAF 507
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A + + +M+ RY+E+F S+ V G++
Sbjct: 508 LAAQRCHKRSMKERYVEVFACSAQEVNIVLMGGTL 542
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+ RGLP++++++D+A FFR + GR +GEA V F + E A+ +
Sbjct: 226 VIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGGRYIEVY 298
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 58.9 bits (141), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHED 129
N+ + HTV +RG PF E++V +F P+ PV + I +G +G VDF+ E+
Sbjct: 286 NQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEE 345
Query: 130 AMQAMSKDRTNMQHRYIELFLNSSSP 155
QA+ +R M RYIE+F + P
Sbjct: 346 VKQALKCNREYMGGRYIEVFREKNVP 371
>sp|Q3US41|ESRP1_MOUSE Epithelial splicing regulatory protein 1 OS=Mus musculus GN=Esrp1
PE=2 SV=2
Length = 680
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 320 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 379
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 380 EYAQNALRKHKELLGKRYIELFRSTAAEVQQV 411
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 443 RDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAF 501
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 502 MAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 536
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 285 HKHHMGTRYIEVY 297
>sp|Q6NXG1|ESRP1_HUMAN Epithelial splicing regulatory protein 1 OS=Homo sapiens GN=ESRP1
PE=1 SV=2
Length = 681
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + NM+ RY+E+F S+ V G++
Sbjct: 503 MAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>sp|B2RYD2|ESRP1_RAT Epithelial splicing regulatory protein 1 OS=Rattus norvegicus
GN=Esrp1 PE=2 SV=2
Length = 677
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF P+ + + Y +GRP+G+A V FA
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R V +RGLP+ A D+ DF VH+ ++++ GRPSG+A + + + A
Sbjct: 444 RDCVRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAF 502
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 503 MAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 537
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
V RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 137 DRTNMQHRYIELF 149
+ +M RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>sp|Q22708|SYM2_CAEEL RNA-binding protein sym-2 OS=Caenorhabditis elegans GN=sym-2 PE=2
SV=3
Length = 618
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH--VDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
V MRGLP+ + + FF P+ + I +GRP+G+A V F T EDA Q + K
Sbjct: 282 IVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKH 341
Query: 138 RTNMQHRYIELFLNSSSPRGGV 159
R + RYIELF ++++ V
Sbjct: 342 RQVIGQRYIELFKSTAAEVQQV 363
Score = 37.7 bits (86), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 84 RGLPFRANERDVADFF--RPVVP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
RGLP++A++ VA FF +VP + + + E GR +GE V F++ E A+ + R
Sbjct: 186 RGLPWQASDHHVAQFFAGLDIVPGGIALCLSSE-GRRNGEVLVQFSSQESRDLALKRHRN 244
Query: 140 NMQHRYIELF 149
+ RYIE++
Sbjct: 245 FLLSRYIEVY 254
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 78 RHTVHMRGLPFRANERDVADF---FRPVVPVH-VDIHYEN-GRPSGEADVDFATHEDAMQ 132
+ V +RGLP+ A + + F F +V V + Y N G PSGEA + + A
Sbjct: 388 KDCVRLRGLPYEATVQHIVTFLGDFATMVKFQGVHMVYNNQGHPSGEAFIQMINEQAASA 447
Query: 133 AMSKDRTNM-----QHRYIELFLNSSS 154
+ N + RYIE+F S+
Sbjct: 448 CAAGVHNNFMSVGKKKRYIEVFQASAE 474
>sp|Q6DEZ7|ESRP1_XENTR Epithelial splicing regulatory protein 1 OS=Xenopus tropicalis
GN=esrp1 PE=2 SV=1
Length = 687
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF PV + + Y + RP+G+A V FA
Sbjct: 322 SKENQVIVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACE 381
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 382 EYAQNALKKHKELLGKRYIELFRSTAAEVQQV 413
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ +F VH+ ++++ GRPSG++ + + + A
Sbjct: 445 RDCIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQ-GRPSGDSFIQMKSADRAY 503
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 504 LAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 538
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+ RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 137 DRTNMQHRYIELF 149
+ +M +RYIE++
Sbjct: 287 HKHHMGNRYIEVY 299
>sp|Q7ZY29|ESRP1_XENLA Epithelial splicing regulatory protein 1 OS=Xenopus laevis GN=esrp1
PE=2 SV=1
Length = 688
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATH 127
S ++ V MRGLPF A +V FF PV + + Y + RP+G+A V FA
Sbjct: 322 SKENQVIVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACE 381
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
E A A+ K + + RYIELF ++++ V
Sbjct: 382 EYAQNALKKHKELLGKRYIELFRSTAAEVQQV 413
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 78 RHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFATHEDAM 131
R + +RGLP+ A D+ +F VH+ ++++ GRPSG++ + + + A
Sbjct: 445 RDCIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQ-GRPSGDSFIQMKSADRAY 503
Query: 132 QAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
A K + M+ RY+E+F S+ V G++
Sbjct: 504 LAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTL 538
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+ RGLP++++++D+A FF+ + GR +GEA V F + E A+ +
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 137 DRTNMQHRYIELF 149
+ +M +RYIE++
Sbjct: 287 HKHHMGNRYIEVY 299
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 54.7 bits (130), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 36 RGGPPRGGFRGGFNNDRWNDRPGGFAGP--RPGGRWVNESSGPSRHTVHMRGLPFRANER 93
+GG RG G RP AG +P V++ + +TV +RG PF E+
Sbjct: 259 QGGVSRGAVPGVL-------RPQEAAGKVEKP----VSQKEPTTPYTVKLRGAPFNVTEK 307
Query: 94 DVADFFRPVVPVHVDI-HYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNS 152
+V +F P+ PV + I +G +G VD ++ E+ +A+ +R M RYIE+F
Sbjct: 308 NVIEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREK 367
Query: 153 SSP 155
+P
Sbjct: 368 QAP 370
>sp|B2RYJ8|ESRP2_RAT Epithelial splicing regulatory protein 2 OS=Rattus norvegicus
GN=Esrp2 PE=2 SV=1
Length = 716
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH--VD----IHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV DF P PV VD + + +GRP+G+A FA E A A+
Sbjct: 349 LRLRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAAL 408
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 409 RRHKGMLGKRYIELFRSTAA 428
Score = 39.7 bits (91), Expect = 0.017, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 458 AGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMMS 516
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V GS+ G S
Sbjct: 517 VERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGSLSRSGLS 562
Score = 38.5 bits (88), Expect = 0.041, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
V RGLP++++++DVA FF+ + + GR +GEA + F E A+ +
Sbjct: 248 VRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQRH 307
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ +M RYIE++ + + G S+
Sbjct: 308 KHHMGVRYIEVYKATGEEFVKIAGGTSL 335
>sp|A8WPC5|SYM2_CAEBR RNA-binding protein sym-2 OS=Caenorhabditis briggsae GN=sym-2 PE=3
SV=2
Length = 634
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVH--VDIHYENGRPSGEAD--VDFATHEDAMQAMS 135
V MRGLP+ + + FF P+ + I +GRP+G D V F T EDA Q +
Sbjct: 286 IVRMRGLPYDCTDTQIRAFFEPLKLTEKILFITRTDGRPTGNCDAFVQFETEEDAQQGLL 345
Query: 136 KDRTNMQHRYIELFLNSSSPRGGV 159
K R + RYIELF ++++ V
Sbjct: 346 KHRQVIGQRYIELFKSTAAEVQQV 369
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 70 VNESSGPSRHTVHMRGLPFRANERDVADF---FRPVVPVH-VDIHYEN-GRPSGEADVDF 124
V S + V +RGLP+ A + + +F F +V V + Y N G PSGEA +
Sbjct: 386 VEVSDEKKKDCVRLRGLPYEATVQHIVNFLGDFANMVKFQGVHMVYNNQGNPSGEAFIQM 445
Query: 125 ATHEDAMQAMSKDRTNM-----QHRYIELFLNSS 153
+ + A S N + RYIE+F +S+
Sbjct: 446 ISEQAAAATASGVHNNFMCVGKKKRYIEVFQSSA 479
>sp|Q9BJZ5|FUSIL_DROME RNA-binding protein fusilli OS=Drosophila melanogaster GN=fus PE=2
SV=1
Length = 967
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRP--VVPVHVD--------IHYENGRPSGEADVDFAT 126
++ + MRGLP+ A + V DFF P HV + +GR +G+A V FA
Sbjct: 378 AQVIIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAN 437
Query: 127 HEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGV 159
DA +A+ + R ++ RYIELF ++++ V
Sbjct: 438 ETDAPKALGRHRESIGQRYIELFRSTTAEVQQV 470
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 14/89 (15%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVA----DFFRPVVP--VHVDIHYENGRPSGEADVDFAT 126
+SG +++ + +RGLP+ A + DF + ++ VH+ I+ + G+PSGEA +
Sbjct: 540 TSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQ-GQPSGEAFIQMDL 598
Query: 127 HEDAMQAMSKDRTN------MQHRYIELF 149
E A + ++ R N ++RYIE+F
Sbjct: 599 EESA-RLCAQRRHNHYMMFGKKYRYIEVF 626
Score = 37.4 bits (85), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 80 TVHMRGLPFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
V RGLP++++++D+A FFR + V + + GR +GEA + F E A
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLS---PLGRRNGEALIRFVCQEHRDMA 336
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGS 164
+ + + ++ RYIE++ S + G S
Sbjct: 337 LKRHKHHIGTRYIEVYRASGEDFLAIAGGAS 367
>sp|Q8K0G8|ESRP2_MOUSE Epithelial splicing regulatory protein 2 OS=Mus musculus GN=Esrp2
PE=2 SV=1
Length = 717
Score = 49.7 bits (117), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 40.0 bits (92), Expect = 0.013, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 459 AGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMMS 517
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGV--GGSGSIGGF 168
E A+ A + + M+ RY+E+ S+ V GGS S G
Sbjct: 518 VERALAAAQRCHKKMMKERYVEVVPCSTEEMSRVLMGGSLSRSGL 562
Score = 38.9 bits (89), Expect = 0.033, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
V RGLP++++++DVA FF+ + + GR +GEA + F E A+ +
Sbjct: 249 VRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ +M RYIE++ + + G S+
Sbjct: 309 KHHMGVRYIEVYKATGEEFVKIAGGTSL 336
>sp|Q9H6T0|ESRP2_HUMAN Epithelial splicing regulatory protein 2 OS=Homo sapiens GN=ESRP2
PE=1 SV=1
Length = 727
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH------VDIHYENGRPSGEADVDFATHEDAMQAM 134
+ +RGLPF A DV F P PV + + + +GRP+G+A FA E A A+
Sbjct: 360 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 419
Query: 135 SKDRTNMQHRYIELFLNSSS 154
+ + + RYIELF ++++
Sbjct: 420 RRHKGMLGKRYIELFRSTAA 439
Score = 42.4 bits (98), Expect = 0.003, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVP------VHVDIHYENGRPSGEADVDFAT 126
+ G R V +RGLP+ A D+ F VH+ ++ + GRPSG+A + +
Sbjct: 469 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 527
Query: 127 HEDAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGS 171
E A+ A + + M+ RY+E+ S+ V G++G G S
Sbjct: 528 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 573
Score = 39.7 bits (91), Expect = 0.018, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQA 133
S V RGLP++++++DVA FF+ + + GR +GEA + F E A
Sbjct: 255 SETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 314
Query: 134 MSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ + + +M RYIE++ + + G S+
Sbjct: 315 LQRHKHHMGVRYIEVYKATGEEFVKIAGGTSL 346
>sp|Q8SQ27|RBM12_MACMU RNA-binding protein 12 OS=Macaca mulatta GN=RBM12 PE=2 SV=1
Length = 932
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++GLP A D+ FF + +H G GEA + FAT EDA M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGE-LGEAFIVFATDEDARLGMMRTGG 62
Query: 140 NMQHRYIELFLNSSS 154
++ + L L+S +
Sbjct: 63 TIKGSKVTLLLSSKT 77
>sp|Q9NTZ6|RBM12_HUMAN RNA-binding protein 12 OS=Homo sapiens GN=RBM12 PE=1 SV=1
Length = 932
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++GLP A D+ FF + +H G GEA + FAT EDA M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGE-LGEAFIVFATDEDARLGMMRTGG 62
Query: 140 NMQHRYIELFLNSSS 154
++ + L L+S +
Sbjct: 63 TIKGSKVTLLLSSKT 77
>sp|Q5RBM8|RBM12_PONAB RNA-binding protein 12 OS=Pongo abelii GN=RBM12 PE=2 SV=1
Length = 932
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV DFF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++GLP A D+ FF + +H G GEA + FAT EDA M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGE-LGEAFIVFATDEDARLGMMRTGG 62
Query: 140 NMQHRYIELFLNSSS 154
++ + L L+S +
Sbjct: 63 TIKGSKVTLLLSSKT 77
>sp|Q8R4X3|RBM12_MOUSE RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3
Length = 992
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHYE---NGRPSGEADVDFATHEDAMQAMSKD 137
V+++GLPF A + V DFF+ + V I+ NG+ +GE V+F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 138 RTNMQHRYIEL 148
+ M +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
P V + G+PF A E DV +FF V VH+ + GR +G V F + +D +A
Sbjct: 301 PDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHL-LKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 134 MSKDRTNMQHRYIEL 148
+ ++R M RY+E+
Sbjct: 360 LKRNRMLMIQRYVEV 374
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ ++GLP A D+ FF + +H G GEA + FAT EDA M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGE-LGEAFIVFATDEDARLGMMRTGG 62
Query: 140 NMQHRYIELFLNSSS 154
++ + L L+S +
Sbjct: 63 TIKGSKVTLLLSSKT 77
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 77 SRHTVHMRGLPFRANERDVADFFR--PV--VPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
++ H+ +PF + DV F PV VHV + NG+ G+A V F T +DA +
Sbjct: 542 AKVCAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVD-NNGQGLGQALVQFKTEDDAHK 600
Query: 133 AMSKDRTNMQHR 144
+ R + R
Sbjct: 601 SEHLHRKKLNGR 612
>sp|Q66JV4|R12BB_MOUSE RNA-binding protein 12B-B OS=Mus musculus GN=Rbm12b2 PE=1 SV=2
Length = 834
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ + GG
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTATEGG 243
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
V + LPF+AN ++ DFF V+P V I Y E G P GEA V + +A+ A+
Sbjct: 760 VMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSAVK 817
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF+ + +H G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGK-VGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSS 153
++ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
Score = 37.4 bits (85), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 58/150 (38%), Gaps = 11/150 (7%)
Query: 56 RPGGFAGPRPG---GRWVNE--SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIH 110
RP RPG ++ E S + +++R LPF + +V FF V DI+
Sbjct: 373 RPESLEKERPGRVSQKYSQEGFSGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDIY 432
Query: 111 Y---ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGS-IG 166
+ G GEA V F + E AM+A +R + L L S G S +
Sbjct: 433 LLCDDKGVGLGEALVRFKSEEQAMKAERLNRQRFLGIEVLLRLISEEQMQEFGIKSSWLS 492
Query: 167 GFGGSGGGRLGGFGGSDPSSPFERRNPNQA 196
R G D S F+ ++P+
Sbjct: 493 NERTQACSR--SHDGDDCSCLFDLKDPSSC 520
Score = 33.9 bits (76), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDA 130
S P VH++ L N+RD+ + FR + + Y++ R + A V F +D
Sbjct: 277 SRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDY 336
Query: 131 MQAMSKDRTNMQHR 144
A+ +T +Q+R
Sbjct: 337 NTALGLHKTVLQYR 350
>sp|Q80YR9|R12BA_MOUSE RNA-binding protein 12B-A OS=Mus musculus GN=Rbm12b1 PE=1 SV=2
Length = 836
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ + GG
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTATEGG 243
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
V + LPF+AN ++ DFF V+P V + Y E G P GEA V + +A+ A+
Sbjct: 762 VKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEALAAVK 819
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF+ + +H G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGK-VGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSS 153
++ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
Score = 37.4 bits (85), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 58/150 (38%), Gaps = 11/150 (7%)
Query: 56 RPGGFAGPRPG---GRWVNE--SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIH 110
RP RPG ++ E S + +++R LPF + +V FF V DI+
Sbjct: 373 RPESLEKERPGRVSQKYSQEGFSGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDIY 432
Query: 111 Y---ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGS-IG 166
+ G GEA V F + E AM+A +R + L L S G S +
Sbjct: 433 LLCDDKGVGLGEALVRFKSEEQAMKAERLNRQRFLGIEVLLRLISEEQMQEFGVKSSWLS 492
Query: 167 GFGGSGGGRLGGFGGSDPSSPFERRNPNQA 196
R G D S F+ ++P+
Sbjct: 493 NERTQACSR--SHDGDDCSCLFDLKDPSSC 520
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDA 130
S P VH++ L N+RD+ + FR + + Y++ R + A V F +D
Sbjct: 277 SRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDY 336
Query: 131 MQAMSKDRTNMQHR 144
A+ +T +Q+R
Sbjct: 337 NTALGLHKTVLQYR 350
>sp|Q8IXT5|RB12B_HUMAN RNA-binding protein 12B OS=Homo sapiens GN=RBM12B PE=1 SV=2
Length = 1001
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 81 VHMRGLPFRANERDVADFFR--PVVPVHVDIHY-ENGRPSGEADVDFATHEDAMQAMS 135
+ + LPF+AN ++ DFF ++P V I Y E G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGSGSIGG 167
M R+IE+ S GG+ G
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNAVKEG 244
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSSPRGG---VGGSGSIG----GFGGSGGGRLGGFGGS 182
++ +ELFL+S + + + +G G G SG L F S
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIES 112
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFR--PVVPVHVDIHYENGRPSGEADVDFATHEDA 130
S P VH++ L +ERD+ +FFR + + Y++ + A V F T +D
Sbjct: 278 SRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDY 337
Query: 131 MQAMSKDRTNMQHRYIEL 148
A+S +T +Q+R + +
Sbjct: 338 NTALSLHKTVLQYRPVHI 355
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Query: 56 RPGGFAGPRPG---GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY- 111
R G RPG ++ E + + +++R PF + +V FF + DI+
Sbjct: 374 RSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLL 433
Query: 112 --ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ G GEA V F + E AM+A +R + L L S + G + S+
Sbjct: 434 YDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGTEVLLRLISEAQIQEFGVNFSV 489
>sp|Q5RFT7|RB12B_PONAB RNA-binding protein 12B OS=Pongo abelii GN=RBM12B PE=2 SV=1
Length = 761
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 81 VHMRGLPFRANERDVADFFR-PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ +RGLP+ NE DV FF V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 140 NMQHRYIELFLNSSSPRGGVGGSG 163
M R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNA 240
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139
+ + GLPF A D+ FF + +H G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 140 NMQHRYIELFLNSSS 154
++ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 38 GPPRGGFRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVAD 97
PPRG NDR + PR S P VH++ L +ERD+ +
Sbjct: 254 SPPRG------INDRHFRKRSHSKSPRR-----TRSRSPLGFYVHLKNLSLSIDERDLRN 302
Query: 98 FFR--PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIEL 148
FFR + + Y++ + A V F T +D A+S +T +Q+R + +
Sbjct: 303 FFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHI 355
Score = 37.4 bits (85), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 55 DRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY--- 111
DRPG + ++ E + + +++R PF + +V FF + DI+
Sbjct: 381 DRPGHVSQ-----KYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYD 435
Query: 112 ENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSI 165
+ G GEA V F + E AM+A +R + L L S + G + S+
Sbjct: 436 DKGVGLGEALVKFKSEEQAMKAERLNRRRFLGTEVLLRLISEAQMQEFGVNFSL 489
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAM-SKD 137
T+ + L + A+E + + F+ + + GRP G A V+F T EDA +A+ S +
Sbjct: 461 KTLIVNNLSYAASEETLQELFKKATSIKMP-QNNQGRPKGYAFVEFPTAEDAKEALNSCN 519
Query: 138 RTNMQHRYIELFLNSSSPRGGVGGSGSIGGF 168
T ++ R I L SSP G + GGF
Sbjct: 520 NTEIEGRAIRLEF--SSPSWQKGNMNARGGF 548
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFR---PVVPVHVDIHYENGRPSGEADVDFATHEDA 130
S PS T+ + L F A+ + + F VV V + H E +P G V F+ EDA
Sbjct: 263 SEPS-DTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDA 321
Query: 131 MQAMSKDRTNMQHRYIE---LFLNSSSPR 156
+A+ +Q YI+ + L+ SSPR
Sbjct: 322 KKALDA----LQGEYIDNRPVRLDFSSPR 346
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
SG S+ T+ + L + A + + + F + V +G+P G A ++FA+ EDA +A
Sbjct: 483 SGESK-TLVLSNLSYSATKETLEEVFEKATFIKVP-QNPHGKPKGYAFIEFASFEDAKEA 540
Query: 134 M-SKDRTNMQHRYIELFLNSSSPR 156
+ S ++ ++ R I L L S+ R
Sbjct: 541 LNSCNKMEIEGRTIRLELQGSNSR 564
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
SG S+ T+ + L + A E + + F + V +NG+ G A ++FA+ EDA +A
Sbjct: 483 SGESK-TLVLSNLSYSATEETLQEVFEKATFIKVP-QNQNGKSKGYAFIEFASFEDAKEA 540
Query: 134 M-SKDRTNMQHRYIELFLNSSSPRG 157
+ S ++ ++ R I L L PRG
Sbjct: 541 LNSCNKREIEGRAIRLELQ--GPRG 563
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
SG S+ T+ + L + A E + + F + V +NG+ G A ++FA+ EDA +A
Sbjct: 484 SGESK-TLVLSNLSYSATEETLQEVFEKATFIKVP-QNQNGKSKGYAFIEFASFEDAKEA 541
Query: 134 M-SKDRTNMQHRYIELFLNSSSPRG 157
+ S ++ ++ R I L L PRG
Sbjct: 542 LNSCNKREIEGRAIRLELQ--GPRG 564
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
SG S+ T+ + L + A E + + F + V +NG+ G A ++FA+ EDA +A
Sbjct: 482 SGESK-TLVLSNLSYSATEETLQEVFEKATFIKVP-QNQNGKSKGYAFIEFASFEDAKEA 539
Query: 134 M-SKDRTNMQHRYIELFLNSSSPRG 157
+ S ++ ++ R I L L PRG
Sbjct: 540 LNSCNKREIEGRAIRLELQ--GPRG 562
>sp|Q28009|FUS_BOVIN RNA-binding protein FUS OS=Bos taurus GN=FUS PE=2 SV=2
Length = 513
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 16/79 (20%)
Query: 60 FAGPR-PGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFR-------------PVVPV 105
F GPR G R +E +T+ ++GL VAD+F+ P++ +
Sbjct: 252 FGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINL 311
Query: 106 HVDIHYENGRPSGEADVDF 124
+ D E G+ GEA V F
Sbjct: 312 YTDR--ETGKLKGEATVSF 328
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 31.6 bits (70), Expect = 5.0, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 74 SGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
SG S+ T+ + L + A E + + F + V + G+ G A ++FA+ EDA +A
Sbjct: 482 SGESK-TLVLSNLSYSATEETLQEVFEKATFIKVP-QNQQGKSKGYAFIEFASFEDAKEA 539
Query: 134 M-SKDRTNMQHRYIELFLNSSSPRG 157
+ S ++ ++ R I L L PRG
Sbjct: 540 LNSCNKMEIEGRTIRLELQ--GPRG 562
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.141 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,326,134
Number of Sequences: 539616
Number of extensions: 6353192
Number of successful extensions: 57506
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 627
Number of HSP's that attempted gapping in prelim test: 29188
Number of HSP's gapped (non-prelim): 20623
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)