Query psy3727
Match_columns 232
No_of_seqs 310 out of 2099
Neff 7.2
Searched_HMMs 46136
Date Sat Aug 17 00:00:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4211|consensus 99.9 2.3E-22 5E-27 183.7 11.7 116 78-217 10-125 (510)
2 TIGR01659 sex-lethal sex-letha 99.9 6.9E-21 1.5E-25 172.5 17.4 105 78-217 107-215 (346)
3 PLN03134 glycine-rich RNA-bind 99.8 3.8E-19 8.2E-24 142.6 14.1 79 78-156 34-116 (144)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.9E-19 6.3E-24 160.9 12.8 105 78-217 3-111 (352)
5 KOG0105|consensus 99.8 3.8E-18 8.2E-23 139.5 11.3 130 78-217 6-137 (241)
6 TIGR01622 SF-CC1 splicing fact 99.8 7.1E-18 1.5E-22 157.2 13.0 118 78-218 89-209 (457)
7 TIGR01645 half-pint poly-U bin 99.7 1.5E-17 3.2E-22 159.3 12.9 116 78-217 107-226 (612)
8 TIGR01628 PABP-1234 polyadenyl 99.7 3.5E-17 7.6E-22 156.7 11.7 106 80-218 2-111 (562)
9 TIGR01648 hnRNP-R-Q heterogene 99.7 5E-17 1.1E-21 155.3 11.2 103 75-218 55-161 (578)
10 KOG4211|consensus 99.7 2.2E-15 4.8E-20 138.2 17.4 77 78-154 281-358 (510)
11 TIGR01659 sex-lethal sex-letha 99.7 8.6E-16 1.9E-20 139.3 13.5 78 78-155 193-276 (346)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 6.9E-16 1.5E-20 139.0 10.4 78 78-155 269-350 (352)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 7E-15 1.5E-19 138.8 16.8 134 78-218 275-417 (481)
14 TIGR01628 PABP-1234 polyadenyl 99.6 1.7E-15 3.7E-20 145.1 11.6 110 79-218 89-201 (562)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 4.6E-15 1E-19 140.0 13.7 111 79-217 3-118 (481)
16 PF00076 RRM_1: RNA recognitio 99.6 1.1E-15 2.5E-20 105.6 7.1 67 81-147 1-70 (70)
17 PF14259 RRM_6: RNA recognitio 99.6 2.3E-15 4.9E-20 105.1 8.2 67 81-147 1-70 (70)
18 KOG0148|consensus 99.6 7.8E-15 1.7E-19 126.1 9.6 121 78-217 62-186 (321)
19 TIGR01648 hnRNP-R-Q heterogene 99.6 1.7E-14 3.7E-19 137.9 12.6 134 78-224 233-370 (578)
20 KOG0121|consensus 99.6 4.5E-15 9.7E-20 114.9 6.6 78 78-155 36-117 (153)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.6 2.8E-14 6.1E-19 134.7 13.4 131 78-218 175-318 (509)
22 KOG0127|consensus 99.6 1.7E-14 3.7E-19 133.8 10.8 77 78-154 117-196 (678)
23 KOG1365|consensus 99.6 1.4E-15 2.9E-20 136.0 3.4 130 78-217 161-302 (508)
24 PLN03120 nucleic acid binding 99.6 1.3E-14 2.9E-19 125.5 9.2 75 79-154 5-80 (260)
25 KOG0125|consensus 99.5 1.1E-14 2.4E-19 128.0 8.1 77 78-154 96-174 (376)
26 KOG0149|consensus 99.5 5.6E-15 1.2E-19 124.8 5.9 75 79-153 13-90 (247)
27 KOG4212|consensus 99.5 5.3E-14 1.1E-18 127.7 11.8 78 78-155 44-125 (608)
28 KOG0113|consensus 99.5 4.4E-14 9.4E-19 122.9 9.7 85 78-162 101-189 (335)
29 KOG0117|consensus 99.5 5.9E-14 1.3E-18 127.6 10.7 102 76-218 81-187 (506)
30 KOG0131|consensus 99.5 4.5E-14 9.8E-19 115.3 7.7 107 78-218 9-119 (203)
31 PLN03121 nucleic acid binding 99.5 9.3E-14 2E-18 118.7 9.5 76 78-154 5-81 (243)
32 TIGR01642 U2AF_lg U2 snRNP aux 99.5 3E-13 6.4E-18 127.7 13.1 77 78-154 295-375 (509)
33 KOG0127|consensus 99.5 8.1E-14 1.8E-18 129.3 8.6 125 78-218 5-140 (678)
34 KOG0107|consensus 99.5 2.9E-13 6.3E-18 109.9 9.5 77 78-157 10-88 (195)
35 KOG4205|consensus 99.5 8.6E-14 1.9E-18 124.0 6.8 113 78-219 6-121 (311)
36 KOG0110|consensus 99.5 2.1E-13 4.6E-18 129.7 9.8 114 80-220 517-637 (725)
37 smart00362 RRM_2 RNA recogniti 99.5 3.8E-13 8.2E-18 91.7 8.2 70 80-149 1-72 (72)
38 TIGR01645 half-pint poly-U bin 99.4 4.5E-13 9.8E-18 128.7 9.9 79 78-156 204-286 (612)
39 KOG0122|consensus 99.4 6E-13 1.3E-17 113.1 9.0 77 78-154 189-269 (270)
40 KOG0145|consensus 99.4 1.2E-12 2.6E-17 112.3 10.4 108 75-217 38-149 (360)
41 cd00590 RRM RRM (RNA recogniti 99.4 1.3E-12 2.8E-17 89.5 8.5 71 80-150 1-74 (74)
42 KOG4207|consensus 99.4 3.4E-13 7.4E-18 112.2 6.4 76 79-154 14-93 (256)
43 COG0724 RNA-binding proteins ( 99.4 8.9E-13 1.9E-17 111.0 8.9 126 79-217 116-247 (306)
44 TIGR01622 SF-CC1 splicing fact 99.4 1.1E-12 2.4E-17 122.4 9.7 76 78-153 186-265 (457)
45 KOG0117|consensus 99.4 9.6E-13 2.1E-17 119.8 8.8 109 78-217 164-281 (506)
46 KOG0109|consensus 99.4 5.3E-13 1.1E-17 115.9 6.1 96 79-217 3-100 (346)
47 PLN03213 repressor of silencin 99.4 1.3E-12 2.7E-17 120.4 8.8 75 78-154 10-88 (759)
48 smart00360 RRM RNA recognition 99.4 1.7E-12 3.8E-17 88.0 7.3 66 83-148 1-70 (71)
49 KOG0130|consensus 99.4 7.9E-13 1.7E-17 103.4 6.0 83 71-154 66-152 (170)
50 KOG0126|consensus 99.3 4.6E-13 1E-17 109.4 1.9 76 79-154 36-115 (219)
51 KOG0108|consensus 99.3 5.9E-12 1.3E-16 116.8 7.5 77 79-155 19-99 (435)
52 KOG0144|consensus 99.3 8.1E-12 1.8E-16 113.4 6.7 106 78-217 34-146 (510)
53 KOG4212|consensus 99.3 2.2E-11 4.8E-16 110.8 9.3 70 78-150 536-607 (608)
54 KOG0123|consensus 99.3 1.5E-11 3.3E-16 112.4 8.3 114 80-222 78-194 (369)
55 KOG0114|consensus 99.2 3.9E-11 8.5E-16 90.0 8.6 76 78-154 18-95 (124)
56 KOG0111|consensus 99.2 6.7E-12 1.5E-16 105.5 4.5 78 78-155 10-91 (298)
57 KOG0124|consensus 99.2 4.6E-12 1E-16 113.1 2.7 127 79-229 114-246 (544)
58 KOG1365|consensus 99.2 7.3E-11 1.6E-15 106.0 7.9 120 78-217 60-183 (508)
59 KOG0148|consensus 99.2 1.4E-10 3.1E-15 100.1 9.3 75 77-155 163-239 (321)
60 KOG0123|consensus 99.1 2.2E-10 4.8E-15 104.9 9.1 96 79-218 2-99 (369)
61 smart00361 RRM_1 RNA recogniti 99.1 2.7E-10 5.9E-15 80.0 7.0 57 92-148 2-69 (70)
62 KOG0116|consensus 99.1 3.7E-10 7.9E-15 104.4 9.5 78 78-155 288-368 (419)
63 PF13893 RRM_5: RNA recognitio 99.0 1.2E-09 2.7E-14 73.0 7.0 54 95-151 1-56 (56)
64 KOG0145|consensus 99.0 2.1E-09 4.6E-14 92.5 9.7 77 78-154 278-358 (360)
65 KOG0144|consensus 99.0 3.6E-10 7.7E-15 102.9 4.4 79 78-156 124-208 (510)
66 KOG0106|consensus 99.0 1.6E-09 3.5E-14 91.8 7.2 120 79-220 2-123 (216)
67 KOG4205|consensus 98.9 8.7E-10 1.9E-14 98.5 5.1 77 79-155 98-177 (311)
68 KOG0147|consensus 98.9 1.8E-09 4E-14 100.7 6.1 73 81-153 281-357 (549)
69 KOG0533|consensus 98.9 3.2E-09 7E-14 91.6 6.9 76 79-154 84-162 (243)
70 KOG1995|consensus 98.9 2.4E-08 5.2E-13 89.3 12.2 78 78-155 66-155 (351)
71 KOG4307|consensus 98.8 7.7E-08 1.7E-12 92.2 14.0 71 80-150 869-943 (944)
72 KOG4209|consensus 98.8 7.6E-09 1.7E-13 89.1 5.8 77 78-154 101-180 (231)
73 KOG0132|consensus 98.8 1.1E-07 2.5E-12 91.9 13.6 73 78-154 421-495 (894)
74 KOG1457|consensus 98.7 1E-07 2.3E-12 80.6 10.1 76 79-154 35-118 (284)
75 KOG0153|consensus 98.7 4.4E-08 9.4E-13 87.3 7.8 73 78-154 228-303 (377)
76 KOG0415|consensus 98.7 2.9E-08 6.3E-13 88.7 6.6 78 76-153 237-318 (479)
77 KOG0109|consensus 98.7 3.1E-08 6.6E-13 86.6 5.9 71 79-155 79-151 (346)
78 KOG0131|consensus 98.7 2.7E-08 5.9E-13 81.6 4.9 77 78-154 96-177 (203)
79 KOG1190|consensus 98.7 4.8E-07 1E-11 82.3 12.9 131 78-219 297-438 (492)
80 KOG4208|consensus 98.6 8.4E-08 1.8E-12 80.1 6.6 77 78-154 49-130 (214)
81 KOG0147|consensus 98.6 9.4E-09 2E-13 96.0 1.0 124 78-225 179-307 (549)
82 KOG0110|consensus 98.6 2.9E-08 6.4E-13 95.1 3.6 77 78-154 613-693 (725)
83 KOG4307|consensus 98.6 3.2E-07 6.9E-12 88.0 9.8 140 78-220 311-459 (944)
84 KOG4206|consensus 98.6 4.1E-07 8.8E-12 76.9 9.3 138 79-217 10-168 (221)
85 KOG1548|consensus 98.5 1.7E-07 3.7E-12 83.6 7.0 77 78-154 134-221 (382)
86 KOG0146|consensus 98.5 6.8E-08 1.5E-12 83.6 4.3 78 78-155 285-366 (371)
87 KOG0124|consensus 98.5 3E-07 6.5E-12 82.7 6.0 78 78-155 210-291 (544)
88 KOG0105|consensus 98.4 2.6E-06 5.7E-11 70.4 10.7 75 75-154 112-192 (241)
89 KOG4454|consensus 98.4 7.3E-08 1.6E-12 81.3 1.3 77 75-152 6-85 (267)
90 KOG4661|consensus 98.4 6.3E-07 1.4E-11 84.5 6.2 78 78-155 405-486 (940)
91 KOG0146|consensus 98.3 9.2E-07 2E-11 76.7 5.5 78 78-155 19-102 (371)
92 PF04059 RRM_2: RNA recognitio 98.3 3.8E-06 8.3E-11 62.9 7.3 76 79-154 2-87 (97)
93 KOG0226|consensus 98.2 8.4E-07 1.8E-11 76.3 3.0 77 78-154 190-270 (290)
94 KOG4210|consensus 98.1 3.8E-06 8.3E-11 74.6 4.7 77 79-155 185-265 (285)
95 KOG0129|consensus 98.0 6.9E-05 1.5E-09 70.2 11.4 127 78-218 259-393 (520)
96 KOG0106|consensus 98.0 3.4E-06 7.5E-11 71.6 2.5 68 77-150 98-167 (216)
97 PF11608 Limkain-b1: Limkain b 98.0 2.2E-05 4.9E-10 57.0 5.7 68 79-154 3-77 (90)
98 PF08777 RRM_3: RNA binding mo 97.9 3.2E-05 6.9E-10 58.8 5.4 67 79-149 2-75 (105)
99 KOG0128|consensus 97.8 2E-06 4.3E-11 84.2 -2.4 88 79-218 668-759 (881)
100 KOG4660|consensus 97.7 2.2E-05 4.8E-10 73.9 2.9 67 78-147 75-143 (549)
101 KOG1456|consensus 97.7 0.0086 1.9E-07 54.6 18.5 133 78-217 287-428 (494)
102 KOG1457|consensus 97.5 7.6E-05 1.6E-09 63.5 3.4 59 79-139 211-271 (284)
103 KOG4849|consensus 97.5 0.00015 3.2E-09 65.3 4.6 73 78-150 80-158 (498)
104 KOG0129|consensus 97.4 0.00032 6.9E-09 65.8 6.5 59 78-136 370-432 (520)
105 KOG1190|consensus 97.4 9.1E-05 2E-09 67.7 2.8 135 76-217 27-172 (492)
106 KOG0120|consensus 97.3 0.00018 3.9E-09 68.0 3.9 81 74-154 285-369 (500)
107 KOG4206|consensus 97.3 0.001 2.2E-08 56.6 7.5 74 74-151 143-219 (221)
108 KOG0151|consensus 97.2 0.00088 1.9E-08 65.1 7.5 76 79-154 175-257 (877)
109 KOG0128|consensus 97.2 0.00011 2.3E-09 72.4 1.1 77 78-154 736-815 (881)
110 KOG4210|consensus 97.2 0.00039 8.4E-09 61.8 4.5 116 78-217 88-207 (285)
111 PF10309 DUF2414: Protein of u 97.1 0.0015 3.3E-08 44.9 5.5 52 79-136 6-61 (62)
112 COG5175 MOT2 Transcriptional r 97.1 0.001 2.2E-08 59.8 5.9 76 78-153 114-202 (480)
113 KOG1548|consensus 96.9 0.0041 8.8E-08 56.0 8.1 76 78-154 265-352 (382)
114 KOG1456|consensus 96.9 0.0068 1.5E-07 55.2 9.2 108 78-216 31-143 (494)
115 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.0021 4.6E-08 42.7 4.1 51 79-134 2-53 (53)
116 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.0079 1.7E-07 45.3 6.3 73 78-151 6-89 (100)
117 KOG2314|consensus 96.5 0.0037 8.1E-08 59.5 4.8 71 78-148 58-138 (698)
118 PF08952 DUF1866: Domain of un 96.4 0.01 2.2E-07 47.6 6.2 71 78-154 27-107 (146)
119 PF08675 RNA_bind: RNA binding 96.3 0.022 4.8E-07 41.4 7.0 53 78-136 9-61 (87)
120 KOG2591|consensus 96.0 0.0092 2E-07 56.8 4.8 66 78-148 175-246 (684)
121 KOG0120|consensus 95.6 0.035 7.5E-07 52.8 6.7 54 100-153 431-491 (500)
122 KOG0115|consensus 95.5 0.012 2.6E-07 51.1 3.0 73 79-151 32-111 (275)
123 KOG2202|consensus 95.4 0.0047 1E-07 53.5 0.3 60 94-153 84-147 (260)
124 KOG1855|consensus 95.4 0.016 3.4E-07 53.7 3.5 60 78-137 231-306 (484)
125 PF14259 RRM_6: RNA recognitio 95.0 0.018 3.9E-07 39.3 2.3 21 198-218 1-21 (70)
126 PF00076 RRM_1: RNA recognitio 94.0 0.04 8.6E-07 37.0 2.1 21 198-218 1-21 (70)
127 KOG4676|consensus 93.9 0.082 1.8E-06 48.6 4.4 73 79-151 8-86 (479)
128 KOG3152|consensus 93.5 0.032 6.9E-07 48.5 1.1 67 79-145 75-157 (278)
129 PF03467 Smg4_UPF3: Smg-4/UPF3 93.2 0.27 5.9E-06 40.6 6.2 66 78-143 7-82 (176)
130 PF07576 BRAP2: BRCA1-associat 93.1 1 2.2E-05 34.4 8.7 65 79-143 14-81 (110)
131 PLN03134 glycine-rich RNA-bind 92.9 0.086 1.9E-06 42.1 2.7 24 195-218 34-57 (144)
132 KOG2193|consensus 92.4 0.13 2.7E-06 47.9 3.4 71 80-154 3-76 (584)
133 KOG4285|consensus 92.2 0.49 1.1E-05 42.3 6.7 72 78-154 197-270 (350)
134 PF03468 XS: XS domain; Inter 92.2 0.15 3.3E-06 39.3 3.2 58 79-136 9-76 (116)
135 KOG1996|consensus 92.2 0.32 6.9E-06 43.3 5.4 58 93-150 301-363 (378)
136 PF11767 SET_assoc: Histone ly 91.7 1.4 3E-05 30.6 7.2 54 89-148 11-65 (66)
137 KOG0112|consensus 90.5 0.11 2.4E-06 52.1 1.1 59 78-136 372-432 (975)
138 KOG0112|consensus 90.5 0.35 7.6E-06 48.7 4.4 78 73-154 451-531 (975)
139 KOG2135|consensus 90.5 0.14 2.9E-06 48.2 1.5 72 79-154 373-446 (526)
140 KOG0114|consensus 90.3 0.23 5.1E-06 37.8 2.4 22 196-217 19-40 (124)
141 cd00590 RRM RRM (RNA recogniti 89.1 0.32 6.9E-06 32.0 2.2 21 198-218 2-22 (74)
142 smart00362 RRM_2 RNA recogniti 88.8 0.35 7.6E-06 31.6 2.2 21 198-218 2-22 (72)
143 PF04847 Calcipressin: Calcipr 88.6 1.1 2.3E-05 37.5 5.4 60 91-154 8-71 (184)
144 PF03880 DbpA: DbpA RNA bindin 88.2 1 2.3E-05 31.5 4.4 58 87-151 10-74 (74)
145 KOG2416|consensus 87.8 0.37 8E-06 46.6 2.4 72 78-153 444-521 (718)
146 KOG2068|consensus 87.2 0.3 6.5E-06 44.0 1.3 76 79-154 78-163 (327)
147 COG0724 RNA-binding proteins ( 84.5 0.74 1.6E-05 38.1 2.4 24 195-218 115-138 (306)
148 KOG0121|consensus 83.7 0.68 1.5E-05 36.6 1.7 24 195-218 36-59 (153)
149 KOG4660|consensus 83.2 1.4 3.1E-05 42.2 3.9 47 107-153 419-472 (549)
150 smart00360 RRM RNA recognition 81.5 0.84 1.8E-05 29.5 1.3 18 200-217 1-18 (71)
151 KOG0804|consensus 81.1 3.5 7.7E-05 38.8 5.6 66 78-143 74-142 (493)
152 PF07292 NID: Nmi/IFP 35 domai 80.9 1.7 3.7E-05 31.9 2.8 74 120-220 1-77 (88)
153 KOG0533|consensus 79.2 1.6 3.5E-05 38.0 2.6 32 196-227 84-124 (243)
154 KOG0126|consensus 75.2 0.64 1.4E-05 38.8 -0.9 24 194-217 34-57 (219)
155 KOG4483|consensus 75.1 6.3 0.00014 36.7 5.3 62 78-144 391-454 (528)
156 KOG0122|consensus 70.3 4.2 9.1E-05 35.4 2.9 30 194-224 188-217 (270)
157 KOG2253|consensus 69.4 2.2 4.8E-05 41.8 1.1 67 78-151 40-108 (668)
158 PF08503 DapH_N: Tetrahydrodip 68.0 21 0.00046 25.9 5.7 60 91-150 2-73 (83)
159 PRK11634 ATP-dependent RNA hel 65.8 36 0.00079 33.6 8.8 68 80-154 488-563 (629)
160 KOG2318|consensus 65.4 15 0.00033 35.8 5.7 73 78-150 174-302 (650)
161 KOG0130|consensus 65.0 7.6 0.00017 31.0 3.1 30 190-220 67-96 (170)
162 KOG0116|consensus 61.9 5.6 0.00012 37.4 2.2 22 197-218 290-311 (419)
163 KOG4676|consensus 61.0 3.1 6.8E-05 38.5 0.4 118 78-218 52-174 (479)
164 KOG4410|consensus 57.9 32 0.0007 30.8 6.0 45 79-127 331-377 (396)
165 PF14111 DUF4283: Domain of un 56.5 3.8 8.3E-05 32.0 0.1 63 89-154 28-92 (153)
166 PF00403 HMA: Heavy-metal-asso 54.5 43 0.00093 21.8 5.1 55 80-138 1-60 (62)
167 PF15023 DUF4523: Protein of u 53.0 38 0.00083 27.4 5.2 53 79-136 87-144 (166)
168 KOG1295|consensus 52.0 19 0.00041 33.3 3.8 61 79-139 8-75 (376)
169 KOG1995|consensus 49.0 42 0.0009 30.8 5.5 25 194-218 65-89 (351)
170 PRK14548 50S ribosomal protein 48.7 23 0.00049 25.7 3.1 49 86-136 28-80 (84)
171 KOG4574|consensus 48.6 9.6 0.00021 38.7 1.5 74 78-155 298-375 (1007)
172 PF02714 DUF221: Domain of unk 48.3 19 0.00042 31.9 3.3 33 120-154 1-34 (325)
173 cd04883 ACT_AcuB C-terminal AC 43.9 88 0.0019 20.6 5.4 51 91-141 14-68 (72)
174 TIGR03636 L23_arch archaeal ri 42.5 37 0.0008 24.2 3.4 51 83-135 18-72 (77)
175 KOG0125|consensus 40.6 22 0.00047 32.4 2.3 23 196-218 97-119 (376)
176 cd04908 ACT_Bt0572_1 N-termina 39.8 1.1E+02 0.0024 20.2 6.0 48 91-140 14-63 (66)
177 PRK11901 hypothetical protein; 39.7 69 0.0015 29.1 5.4 55 78-136 245-303 (327)
178 COG3012 Uncharacterized protei 38.9 42 0.00092 26.9 3.5 66 89-154 60-131 (151)
179 KOG0226|consensus 37.2 29 0.00064 30.5 2.5 110 79-218 97-213 (290)
180 KOG4213|consensus 37.1 37 0.00081 28.4 3.0 59 78-139 111-172 (205)
181 PF07292 NID: Nmi/IFP 35 domai 35.3 28 0.00062 25.5 1.9 23 77-99 51-73 (88)
182 COG0030 KsgA Dimethyladenosine 35.2 44 0.00095 29.4 3.4 33 79-111 96-129 (259)
183 COG3254 Uncharacterized conser 33.6 87 0.0019 23.7 4.3 46 91-136 25-70 (105)
184 PF08777 RRM_3: RNA binding mo 33.6 32 0.0007 25.8 2.0 23 196-218 2-24 (105)
185 KOG4008|consensus 32.8 25 0.00055 30.5 1.5 28 79-106 41-68 (261)
186 PF13046 DUF3906: Protein of u 32.2 26 0.00056 24.2 1.1 36 87-122 27-63 (64)
187 PF07876 Dabb: Stress responsi 32.0 1.4E+02 0.003 21.0 5.2 56 79-135 3-72 (97)
188 KOG3424|consensus 31.6 45 0.00098 25.9 2.5 42 89-131 34-83 (132)
189 cd06398 PB1_Joka2 The PB1 doma 31.4 1.1E+02 0.0024 22.3 4.5 53 92-149 31-85 (91)
190 KOG1596|consensus 29.9 4E+02 0.0087 23.7 8.9 6 2-7 4-9 (317)
191 cd04882 ACT_Bt0572_2 C-termina 29.7 1.5E+02 0.0033 18.8 4.9 47 93-139 14-62 (65)
192 COG4907 Predicted membrane pro 29.2 53 0.0011 31.5 3.0 38 91-136 487-534 (595)
193 KOG0113|consensus 26.0 47 0.001 29.9 2.0 24 195-218 101-124 (335)
194 PF04059 RRM_2: RNA recognitio 26.0 71 0.0015 23.7 2.7 23 196-218 2-24 (97)
195 KOG1855|consensus 23.2 94 0.002 29.4 3.4 23 196-218 232-254 (484)
196 PF11387 DUF2795: Protein of u 22.5 65 0.0014 20.2 1.6 17 200-216 1-17 (44)
197 PRK00274 ksgA 16S ribosomal RN 22.0 87 0.0019 27.3 2.9 31 80-110 107-138 (272)
198 cd06404 PB1_aPKC PB1 domain is 21.8 3.2E+02 0.0069 19.8 7.3 52 80-136 10-67 (83)
199 PF04026 SpoVG: SpoVG; InterP 21.3 1.3E+02 0.0028 21.7 3.2 23 104-126 3-27 (84)
200 TIGR00755 ksgA dimethyladenosi 21.1 93 0.002 26.6 2.9 27 80-106 96-122 (253)
201 PF15513 DUF4651: Domain of un 20.9 1.3E+02 0.0028 20.6 2.9 13 93-105 9-22 (62)
202 PF07530 PRE_C2HC: Associated 20.9 84 0.0018 21.7 2.1 60 93-154 2-65 (68)
203 cd04889 ACT_PDH-BS-like C-term 20.9 2.3E+02 0.0049 17.7 4.3 41 93-134 13-55 (56)
204 PF01071 GARS_A: Phosphoribosy 20.8 99 0.0021 26.0 2.9 44 91-136 25-69 (194)
205 PF13820 Nucleic_acid_bd: Puta 20.7 1.4E+02 0.0031 24.0 3.6 58 79-136 5-64 (149)
206 smart00666 PB1 PB1 domain. Pho 20.0 2.6E+02 0.0056 19.0 4.6 51 83-136 14-67 (81)
No 1
>KOG4211|consensus
Probab=99.88 E-value=2.3e-22 Score=183.70 Aligned_cols=116 Identities=35% Similarity=0.578 Sum_probs=98.2
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCCCceEEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEecCCCCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRG 157 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~~~~~~~ 157 (232)
.+.|.+++|||+||++||.+||+.|+|..+.+...+|++.|+|||||+++||+++||++|...|..|+|+|+.+...+..
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d 89 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEAD 89 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcccc
Confidence 48999999999999999999999999999888888899999999999999999999999999999999999999887532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhC
Q psy3727 158 GVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 158 ~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
..-.. . .+ ....+..+|+|++|||+||++||.+||+
T Consensus 90 ~~~~~--------------~--------g~--~s~~~d~vVRLRGLPfscte~dI~~FFa 125 (510)
T KOG4211|consen 90 WVMRP--------------G--------GP--NSSANDGVVRLRGLPFSCTEEDIVEFFA 125 (510)
T ss_pred ccccC--------------C--------CC--CCCCCCceEEecCCCccCcHHHHHHHhc
Confidence 21000 0 00 1112345899999999999999999995
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.87 E-value=6.9e-21 Score=172.50 Aligned_cols=105 Identities=17% Similarity=0.233 Sum_probs=93.2
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
.++|||+|||+++||++|+++|++| .|++|+|++|. ++++|||||+|+++++|++||+. |+..|.++.|+|.++.+
T Consensus 107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p 186 (346)
T TIGR01659 107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARP 186 (346)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccc
Confidence 6999999999999999999999999 89999999986 89999999999999999999986 99999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhC
Q psy3727 154 SPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 154 ~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
.. . . .....|+|.|||+++|++||+++|.
T Consensus 187 ~~--~-------------------------------~--~~~~~lfV~nLp~~vtee~L~~~F~ 215 (346)
T TIGR01659 187 GG--E-------------------------------S--IKDTNLYVTNLPRTITDDQLDTIFG 215 (346)
T ss_pred cc--c-------------------------------c--cccceeEEeCCCCcccHHHHHHHHH
Confidence 31 0 0 0123689999999999999999995
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=3.8e-19 Score=142.60 Aligned_cols=79 Identities=22% Similarity=0.353 Sum_probs=74.2
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
..+|||+|||+++||++|+++|++| .|++|.|++|. ++++|||||+|+++++|++||+. |+++|+++.|+|.++..
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 4789999999999999999999999 89999999987 89999999999999999999986 99999999999999987
Q ss_pred CCC
Q psy3727 154 SPR 156 (232)
Q Consensus 154 ~~~ 156 (232)
++.
T Consensus 114 ~~~ 116 (144)
T PLN03134 114 RPS 116 (144)
T ss_pred CCC
Confidence 653
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.80 E-value=2.9e-19 Score=160.88 Aligned_cols=105 Identities=14% Similarity=0.237 Sum_probs=93.5
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
..+|||+|||+++||+||+++|++| .|.+|.|++++ ++++|||||+|.++++|++||+. |+..|.++.|.|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 3789999999999999999999999 89999999987 89999999999999999999986 99999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhC
Q psy3727 154 SPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 154 ~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
... ......|+|.|||+++|+++|+++|.
T Consensus 83 ~~~-----------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~ 111 (352)
T TIGR01661 83 SSD-----------------------------------SIKGANLYVSGLPKTMTQHELESIFS 111 (352)
T ss_pred ccc-----------------------------------ccccceEEECCccccCCHHHHHHHHh
Confidence 410 00124689999999999999999996
No 5
>KOG0105|consensus
Probab=99.77 E-value=3.8e-18 Score=139.50 Aligned_cols=130 Identities=20% Similarity=0.270 Sum_probs=93.2
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSSP 155 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~~ 155 (232)
.++|+|+|||-++.|.||+++|.+| .|+.|.|..-. .+..||||+|+++.||+.||.- |+..+++..|+|.++..-
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg- 83 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG- 83 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC-
Confidence 4899999999999999999999999 88888886544 3457999999999999999997 999999999999987664
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhC
Q psy3727 156 RGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 156 ~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
+.+.- .+|.+.+++.+ |.++.....+..+.+ ...|.|.+||.+.+|+||++..-
T Consensus 84 -r~s~~--~~G~y~gggrg---Ggg~gg~rgppsrrS--e~RVvVsGLp~SgSWQDLKDHmR 137 (241)
T KOG0105|consen 84 -RSSSD--RRGSYSGGGRG---GGGGGGRRGPPSRRS--EYRVVVSGLPPSGSWQDLKDHMR 137 (241)
T ss_pred -Ccccc--cccccCCCCCC---CCCCCcccCCccccc--ceeEEEecCCCCCchHHHHHHHH
Confidence 21111 11222111111 111111111112222 34689999999999999998764
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.76 E-value=7.1e-18 Score=157.22 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=96.1
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEecCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~~~~ 154 (232)
..+|||+|||+++|+++|++||++| .|+.|.|++++ ++++|||||+|.+.++|++||.++++.|.++.|.|..+...
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~ 168 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAE 168 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchh
Confidence 5899999999999999999999999 89999999987 89999999999999999999999999999999999876554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCC
Q psy3727 155 PRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 155 ~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
........ .......+....|+|.|||+++|+++|+++|+.
T Consensus 169 ~~~~~~~~-----------------------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~ 209 (457)
T TIGR01622 169 KNRAAKAA-----------------------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEP 209 (457)
T ss_pred hhhhhhcc-----------------------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 21110000 000001122457999999999999999999963
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.74 E-value=1.5e-17 Score=159.29 Aligned_cols=116 Identities=15% Similarity=0.177 Sum_probs=93.9
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
.++|||+|||+++|+++|+++|++| .|++|+|+.|+ ++++|||||+|+++++|++||+. |+..|+||.|+|.....
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 4899999999999999999999999 89999999987 89999999999999999999986 99999999999985433
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhC
Q psy3727 154 SPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 154 ~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
.+... ...............|+|.|||+++++++|+++|+
T Consensus 187 ~p~a~------------------------~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs 226 (612)
T TIGR01645 187 MPQAQ------------------------PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFE 226 (612)
T ss_pred ccccc------------------------cccccccccccccceEEeecCCCCCCHHHHHHHHh
Confidence 21100 00000111111234799999999999999999996
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.72 E-value=3.5e-17 Score=156.66 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=92.1
Q ss_pred EEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCCC
Q psy3727 80 TVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSSP 155 (232)
Q Consensus 80 ~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~~ 155 (232)
+|||+|||+++||++|+++|++| .|+.|+|++|. ++++|||||+|.++++|++||+. |...|.++.|+|.++...+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999 88999999987 88999999999999999999987 9999999999998875432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCC
Q psy3727 156 RGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 156 ~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
... ......|+|.|||+++|+++|+++|..
T Consensus 82 ~~~---------------------------------~~~~~~vfV~nLp~~~~~~~L~~~F~~ 111 (562)
T TIGR01628 82 SLR---------------------------------RSGVGNIFVKNLDKSVDNKALFDTFSK 111 (562)
T ss_pred ccc---------------------------------ccCCCceEEcCCCccCCHHHHHHHHHh
Confidence 110 011236889999999999999999973
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.71 E-value=5e-17 Score=155.26 Aligned_cols=103 Identities=13% Similarity=0.191 Sum_probs=89.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CCceee-eeEEEEEe
Q psy3727 75 GPSRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK-DRTNMQ-HRYIELFL 150 (232)
Q Consensus 75 ~~s~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~-~g~~i~-gR~I~V~~ 150 (232)
++..++|||+|||+++||++|+++|++| .|++|+|++|. ++++|||||+|.++|+|++||+. |+.+|. ++.|.|..
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 4446999999999999999999999999 89999999998 99999999999999999999997 888774 67666643
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCC
Q psy3727 151 NSSSPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 151 ~~~~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
+.. ...|+|.|||+++|+++|.+.|..
T Consensus 135 S~~-----------------------------------------~~rLFVgNLP~~~TeeeL~eeFsk 161 (578)
T TIGR01648 135 SVD-----------------------------------------NCRLFVGGIPKNKKREEILEEFSK 161 (578)
T ss_pred ccc-----------------------------------------CceeEeecCCcchhhHHHHHHhhc
Confidence 211 247999999999999999999874
No 10
>KOG4211|consensus
Probab=99.68 E-value=2.2e-15 Score=138.17 Aligned_cols=77 Identities=58% Similarity=0.965 Sum_probs=73.9
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCCCceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEecCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~~~~ 154 (232)
.+.|++++|||++++.+|.+||+.+.+..|+|.... |+.+|+|+|+|+|.|||..||.+++..|++|+|++++....
T Consensus 281 g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav~Amskd~anm~hrYVElFln~~~ 358 (510)
T KOG4211|consen 281 GHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMGKDGANMGHRYVELFLNGAP 358 (510)
T ss_pred CceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhHhhhccCCcccCcceeeecccCCc
Confidence 489999999999999999999999999999999998 99999999999999999999999999999999999998765
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.67 E-value=8.6e-16 Score=139.34 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=71.3
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeee--eEEEEEec
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQH--RYIELFLN 151 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~g--R~I~V~~~ 151 (232)
..+|||.|||+++||++|+++|++| +|+.|.|+.++ ++++|||||+|++.++|++||+. |++.|.+ +.|+|.++
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 4789999999999999999999999 89999999887 89999999999999999999997 9998876 68999888
Q ss_pred CCCC
Q psy3727 152 SSSP 155 (232)
Q Consensus 152 ~~~~ 155 (232)
....
T Consensus 273 ~~~~ 276 (346)
T TIGR01659 273 EEHG 276 (346)
T ss_pred Cccc
Confidence 7653
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.65 E-value=6.9e-16 Score=138.98 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=73.9
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
+.+|||+|||+++|+++|+++|++| .|++|+|++|. +++||||||+|++.++|.+||+. |+..|+||.|+|.++..
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 3689999999999999999999999 89999999997 99999999999999999999997 99999999999999987
Q ss_pred CC
Q psy3727 154 SP 155 (232)
Q Consensus 154 ~~ 155 (232)
++
T Consensus 349 ~~ 350 (352)
T TIGR01661 349 KA 350 (352)
T ss_pred CC
Confidence 74
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.64 E-value=7e-15 Score=138.77 Aligned_cols=134 Identities=10% Similarity=0.091 Sum_probs=93.5
Q ss_pred CcEEEEcCCCC-CCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCC
Q psy3727 78 RHTVHMRGLPF-RANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 78 ~~~vfV~nLp~-~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~ 154 (232)
..+|||+|||+ .+|+++|+++|+.| .|++|.|+++ .+|+|||+|.+.++|++||+. |+..|.|+.|+|.++...
T Consensus 275 ~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~---~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 275 GSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN---KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 48999999998 69999999999999 9999999886 368999999999999999986 999999999999988654
Q ss_pred CCCCCCCC---CCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCC
Q psy3727 155 PRGGVGGS---GSI---GGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 155 ~~~~~~g~---~g~---gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
........ -+. ..+.. .....+..+.. .....-.+....|+|.|||+++|+++|+++|..
T Consensus 352 ~~~~~~~~~~~~~~~~~~d~~~---~~~~r~~~~~~-~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~ 417 (481)
T TIGR01649 352 NVQPPREGQLDDGLTSYKDYSS---SRNHRFKKPGS-ANKNNIQPPSATLHLSNIPLSVSEEDLKELFAE 417 (481)
T ss_pred cccCCCCCcCcCCCcccccccC---CccccCCCccc-ccccccCCCCcEEEEecCCCCCCHHHHHHHHHh
Confidence 21100000 000 00100 00000110000 001111223457999999999999999999953
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.63 E-value=1.7e-15 Score=145.05 Aligned_cols=110 Identities=13% Similarity=0.119 Sum_probs=92.6
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCCC
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSSP 155 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~~ 155 (232)
.+|||+|||.++|+++|+++|+.| .|+.|.|+.+. ++++|||||+|+++++|++||++ |+..+.++.|.|.....+.
T Consensus 89 ~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~ 168 (562)
T TIGR01628 89 GNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKH 168 (562)
T ss_pred CceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccc
Confidence 679999999999999999999999 89999999988 99999999999999999999998 9999999999986554431
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCC
Q psy3727 156 RGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 156 ~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
... .........|+|+|||+++|+++|+++|..
T Consensus 169 ~~~------------------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~ 201 (562)
T TIGR01628 169 ERE------------------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAK 201 (562)
T ss_pred ccc------------------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHh
Confidence 110 001112246889999999999999999963
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.62 E-value=4.6e-15 Score=139.98 Aligned_cols=111 Identities=20% Similarity=0.140 Sum_probs=88.7
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh---CCceeeeeEEEEEecCCC
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK---DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~---~g~~i~gR~I~V~~~~~~ 154 (232)
.+|||+|||+++||++|+++|++| .|..|.|++ .|++|||+|++.++|++||+. +...|.|+.|.|.++..+
T Consensus 3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 899999999999999999999999 888998885 468999999999999999984 788999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-cceEEEcCCCccccHHHHHhhhC
Q psy3727 155 PRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPN-QAYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 155 ~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~-~~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
+...... .......++ -..|.|.||++++|+++|.++|.
T Consensus 79 ~~~~~~~------------------------~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~ 118 (481)
T TIGR01649 79 EIKRDGN------------------------SDFDSAGPNKVLRVIVENPMYPITLDVLYQIFN 118 (481)
T ss_pred ccccCCC------------------------CcccCCCCCceEEEEEcCCCCCCCHHHHHHHHh
Confidence 3111000 000011111 24689999999999999999996
No 16
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.62 E-value=1.1e-15 Score=105.64 Aligned_cols=67 Identities=25% Similarity=0.440 Sum_probs=63.3
Q ss_pred EEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEE
Q psy3727 81 VHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIE 147 (232)
Q Consensus 81 vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~ 147 (232)
|||+|||.++|+++|+++|++| .+..+.+..+. ++++++|||+|+++++|++|++. |+..++++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999 88899999876 89999999999999999999996 99999999885
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=2.3e-15 Score=105.11 Aligned_cols=67 Identities=27% Similarity=0.425 Sum_probs=61.5
Q ss_pred EEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEE
Q psy3727 81 VHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIE 147 (232)
Q Consensus 81 vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~ 147 (232)
|+|+|||+++|+++|.++|+.+ .|..|.+.+++ ++++++|||+|.++++|++|++. ++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999 78899999988 89999999999999999999998 77999999985
No 18
>KOG0148|consensus
Probab=99.58 E-value=7.8e-15 Score=126.12 Aligned_cols=121 Identities=16% Similarity=0.203 Sum_probs=104.0
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
-+-|||+.|..+++.++|++.|.+| +|.+++|++|. +++|||+||.|.+.+||++||.. |++.|+.|.|+-.++..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 4789999999999999999999999 99999999998 99999999999999999999997 99999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhC
Q psy3727 154 SPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 154 ~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
++....+. .-.-..-++..++..+.|.+.|++--.|+++|++.|.
T Consensus 142 Kp~e~n~~-------------------~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs 186 (321)
T KOG0148|consen 142 KPSEMNGK-------------------PLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFS 186 (321)
T ss_pred CccccCCC-------------------CccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcc
Confidence 86221100 0011123467778889999999999999999999995
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.57 E-value=1.7e-14 Score=137.92 Aligned_cols=134 Identities=18% Similarity=0.150 Sum_probs=94.4
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC---CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV---VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~---~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
..+|||+|||+++|+++|+++|++| +|++|.++ ++||||+|++.++|++||+. |+.+|+++.|+|.++.+
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 3789999999999999999999999 67788765 46999999999999999986 99999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCCCCCCCC
Q psy3727 154 SPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLCPYHRHS 224 (232)
Q Consensus 154 ~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~~~~~~~ 224 (232)
....... +..++ .++++..+. ...........+....+.+.+|||+++++.|.+||..+=+.++
T Consensus 307 ~~~~~~~-~~~rg-~gg~~~~~~-----~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~~ 370 (578)
T TIGR01648 307 VDKKSYV-RYTRG-TGGRGKERQ-----AARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIRG 370 (578)
T ss_pred CCccccc-ccccc-cCCCccccc-----ccccccCcccCccccccccccccccccccchhhccccCccccC
Confidence 6432111 10111 000000000 0000011122333457888899999999999999987644443
No 20
>KOG0121|consensus
Probab=99.57 E-value=4.5e-15 Score=114.94 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=72.1
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
.+||||+||+|-+||++|.++|+.| .|.+|.|-.|+ -.+.|||||+|.+.+||+.||+- +++.|+.|.|.|+++-.
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 4999999999999999999999999 88889888888 67999999999999999999998 99999999999998765
Q ss_pred CC
Q psy3727 154 SP 155 (232)
Q Consensus 154 ~~ 155 (232)
-.
T Consensus 116 F~ 117 (153)
T KOG0121|consen 116 FV 117 (153)
T ss_pred ch
Confidence 43
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.57 E-value=2.8e-14 Score=134.66 Aligned_cols=131 Identities=15% Similarity=0.089 Sum_probs=83.1
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-C------------ceEEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCceeeee
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-V------------PVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHR 144 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~------------i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~~g~~i~gR 144 (232)
..+|||+|||+++|+++|++||+++ . |..|.+ .+.+|||||+|.+.++|+.||++|+..|.++
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~----~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~ 250 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI----NKEKNFAFLEFRTVEEATFAMALDSIIYSNV 250 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE----CCCCCEEEEEeCCHHHHhhhhcCCCeEeeCc
Confidence 4789999999999999999999864 1 122222 4678999999999999999998899999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCC
Q psy3727 145 YIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 145 ~I~V~~~~~~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
.|.|.................. ... ......... .... .........|+|.|||+++|+++|+++|+.
T Consensus 251 ~l~v~r~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~--~~~~-~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~ 318 (509)
T TIGR01642 251 FLKIRRPHDYIPVPQITPEVSQ--KNP-DDNAKNVEK--LVNS-TTVLDSKDRIYIGNLPLYLGEDQIKELLES 318 (509)
T ss_pred eeEecCccccCCccccCCCCCC--CCC-ccccccccc--cccc-ccCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 9998644322100000000000 000 000000000 0000 000111347999999999999999999974
No 22
>KOG0127|consensus
Probab=99.56 E-value=1.7e-14 Score=133.76 Aligned_cols=77 Identities=22% Similarity=0.365 Sum_probs=73.2
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~ 154 (232)
.+.|+|+||||.|.++||+.+|+.| .|+.|.|+... ++.+|||||.|....+|..||+. |+.+|+||+|-|++|-.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 4899999999999999999999999 89999999888 88899999999999999999998 999999999999998765
No 23
>KOG1365|consensus
Probab=99.56 E-value=1.4e-15 Score=136.04 Aligned_cols=130 Identities=31% Similarity=0.382 Sum_probs=94.4
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCC-C----CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEec
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRP-V----VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLN 151 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~-~----~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~ 151 (232)
.-.|.+++|||++|+.||.+||.+ | ..+.|.+++.. |+++|.|||.|+.+++|+.||.+|.+.|+-|+|+|+.+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 467888999999999999999974 3 45578888776 99999999999999999999999999999999999999
Q ss_pred CCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhC
Q psy3727 152 SSSPRG------GVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 152 ~~~~~~------~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
+.++.. .+.+-.. + -..+-....+..-.+. .....+|.+++|||++|.+||.+||.
T Consensus 241 TaaEvqqvlnr~~s~pLi~--~-------~~sp~~p~~p~~~~p~-~~~kdcvRLRGLPy~AtvEdIL~Flg 302 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIP--G-------LTSPLLPGGPARLVPP-TRSKDCVRLRGLPYEATVEDILDFLG 302 (508)
T ss_pred hHHHHHHHHHhhccccccC--C-------CCCCCCCCCccccCCC-CCCCCeeEecCCChhhhHHHHHHHHH
Confidence 887521 1111000 0 0000000001000111 11256999999999999999999985
No 24
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.56 E-value=1.3e-14 Score=125.50 Aligned_cols=75 Identities=23% Similarity=0.281 Sum_probs=70.0
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEecCCC
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~~~~ 154 (232)
.+|||+|||+++||++|++||+.| +|++|.|+.++ .++|||||+|+++++|+.||.+|+..|.+|.|+|.++...
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~-~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN-ERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC-CCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 789999999999999999999999 99999999886 3579999999999999999988999999999999998654
No 25
>KOG0125|consensus
Probab=99.55 E-value=1.1e-14 Score=127.98 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=73.1
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~ 154 (232)
..+|+|.||||...+.||+..|.+| .|++|+|+.+..-+|||+||+|++.+||++|-++ |++.|+||+|||..++.+
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 5899999999999999999999999 8999999999855899999999999999999998 999999999999998775
No 26
>KOG0149|consensus
Probab=99.55 E-value=5.6e-15 Score=124.76 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=71.7
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEecCC
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSS 153 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~~~ 153 (232)
..|||+||+|+++.++|+++|++| +|+++.|+.|+ +++|||+||+|.+.|.|++|++...-.|+||+..+.++.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 679999999999999999999999 99999999998 9999999999999999999999888899999999988876
No 27
>KOG4212|consensus
Probab=99.54 E-value=5.3e-14 Score=127.70 Aligned_cols=78 Identities=19% Similarity=0.371 Sum_probs=72.9
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC--CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV--VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~--~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
...|||.||||++.|+||+++|.+. +|..|.|..|. |+++|+|.|||+++|.+++|+++ |+.++++|+|.|+....
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 4669999999999999999999976 89999999999 99999999999999999999998 99999999999998766
Q ss_pred CC
Q psy3727 154 SP 155 (232)
Q Consensus 154 ~~ 155 (232)
.+
T Consensus 124 ~q 125 (608)
T KOG4212|consen 124 EQ 125 (608)
T ss_pred hh
Confidence 43
No 28
>KOG0113|consensus
Probab=99.53 E-value=4.4e-14 Score=122.89 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=78.3
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
-+||||.-|+|+++|.+|+..|+.| .|..|+|+.|. |+++|||||+|+++.++++|.+. ++..|++|.|.|++...
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERg 180 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERG 180 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccc
Confidence 4899999999999999999999999 89999999998 99999999999999999999998 99999999999999887
Q ss_pred CCCCCCCCC
Q psy3727 154 SPRGGVGGS 162 (232)
Q Consensus 154 ~~~~~~~g~ 162 (232)
.....+-.+
T Consensus 181 RTvkgW~PR 189 (335)
T KOG0113|consen 181 RTVKGWLPR 189 (335)
T ss_pred ccccccccc
Confidence 765555433
No 29
>KOG0117|consensus
Probab=99.52 E-value=5.9e-14 Score=127.61 Aligned_cols=102 Identities=15% Similarity=0.256 Sum_probs=91.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCcee-eeeEEEEEe
Q psy3727 76 PSRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNM-QHRYIELFL 150 (232)
Q Consensus 76 ~s~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i-~gR~I~V~~ 150 (232)
+-++-|||+.||-++.|+||..+|+.. +|-+++|++|+ |.++|||||+|.+.++|++||+. |.++| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 337999999999999999999999999 89999999997 99999999999999999999997 88777 578888876
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCC
Q psy3727 151 NSSSPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 151 ~~~~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
+-. .+.|+|.|+|-+.+++||.+-|..
T Consensus 161 Sva-----------------------------------------n~RLFiG~IPK~k~keeIlee~~k 187 (506)
T KOG0117|consen 161 SVA-----------------------------------------NCRLFIGNIPKTKKKEEILEEMKK 187 (506)
T ss_pred eee-----------------------------------------cceeEeccCCccccHHHHHHHHHh
Confidence 543 358999999999999999999873
No 30
>KOG0131|consensus
Probab=99.51 E-value=4.5e-14 Score=115.26 Aligned_cols=107 Identities=17% Similarity=0.117 Sum_probs=94.8
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
+.+|||+||+..+|++-|+++|-++ .|++|+|++|+ ..++|||||||.++|||+-||+- |...|-||+|+|..++.
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 6899999999999999999999999 78899999999 77999999999999999999997 98899999999998873
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCC
Q psy3727 154 SPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 154 ~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
.. ........+++.||-+.+++.-|.+.|..
T Consensus 89 ~~----------------------------------~nl~vganlfvgNLd~~vDe~~L~dtFsa 119 (203)
T KOG0131|consen 89 HQ----------------------------------KNLDVGANLFVGNLDPEVDEKLLYDTFSA 119 (203)
T ss_pred cc----------------------------------ccccccccccccccCcchhHHHHHHHHHh
Confidence 31 11222357889999999999999999975
No 31
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.50 E-value=9.3e-14 Score=118.73 Aligned_cols=76 Identities=21% Similarity=0.176 Sum_probs=70.4
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEecCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~~~~ 154 (232)
+++|||+||++++|++||++||+.| +|.+|+|+.|. ..++||||+|+++++|+.||.++++.|.++.|.|..+...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~-et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG-EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC-CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCccc
Confidence 4899999999999999999999999 99999999884 5668999999999999999999999999999999887654
No 32
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.49 E-value=3e-13 Score=127.72 Aligned_cols=77 Identities=9% Similarity=0.158 Sum_probs=72.1
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
..+|||+|||+.+|+++|+++|+.| .|..|.|+++. ++++|||||+|.+.++|+.||+. |+..|.++.|.|.++..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 4899999999999999999999999 88899999886 89999999999999999999986 99999999999999865
Q ss_pred C
Q psy3727 154 S 154 (232)
Q Consensus 154 ~ 154 (232)
.
T Consensus 375 ~ 375 (509)
T TIGR01642 375 G 375 (509)
T ss_pred C
Confidence 4
No 33
>KOG0127|consensus
Probab=99.48 E-value=8.1e-14 Score=129.31 Aligned_cols=125 Identities=20% Similarity=0.268 Sum_probs=96.6
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
+.||||++|||++|.++|.+||+.+ .|..+.++++. ..++||+||+|+=+||++.|++. +.+.++||.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 3799999999999999999999999 67788888888 68999999999999999999998 99999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----C--cceEEEcCCCccccHHHHHhhhCC
Q psy3727 154 SPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNP-----N--QAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 154 ~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~-----~--~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
+++..--.-+ -......+..+..+ + ...|.++||||+|.+.||+.+|..
T Consensus 85 R~r~e~~~~~----------------e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~ 140 (678)
T KOG0127|consen 85 RARSEEVEKG----------------ENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSN 140 (678)
T ss_pred cccchhcccc----------------cchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhh
Confidence 7532100000 00001111111111 1 357999999999999999999974
No 34
>KOG0107|consensus
Probab=99.47 E-value=2.9e-13 Score=109.93 Aligned_cols=77 Identities=27% Similarity=0.323 Sum_probs=70.5
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSSP 155 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~~ 155 (232)
++.|||+||+.++|+.||+..|..| .+-.|+|.. .+.|||||||+++.||+.|+.. |++.|.|..|+|.+++..+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr---nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR---NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee---cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 4899999999999999999999999 677888887 4778999999999999999997 9999999999999999886
Q ss_pred CC
Q psy3727 156 RG 157 (232)
Q Consensus 156 ~~ 157 (232)
+.
T Consensus 87 r~ 88 (195)
T KOG0107|consen 87 RG 88 (195)
T ss_pred cc
Confidence 53
No 35
>KOG4205|consensus
Probab=99.46 E-value=8.6e-14 Score=123.97 Aligned_cols=113 Identities=15% Similarity=0.146 Sum_probs=97.4
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEecCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~~~~ 154 (232)
.+.|||++|+|++||+.|+++|++| +|.++.+++|. ++++||+||+|++++.+.++|....+.|++|.|+++.+.++
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r 85 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSR 85 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCc
Confidence 4899999999999999999999999 99999999998 99999999999999999999998899999999999998887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCCC
Q psy3727 155 PRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLCP 219 (232)
Q Consensus 155 ~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~~ 219 (232)
...... ........|+|.+||.++|+++|+++|+..
T Consensus 86 ~~~~~~-----------------------------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~ 121 (311)
T KOG4205|consen 86 EDQTKV-----------------------------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQF 121 (311)
T ss_pred cccccc-----------------------------ccccceeEEEecCcCCCCchHHHhhhhhcc
Confidence 322100 001123578999999999999999999853
No 36
>KOG0110|consensus
Probab=99.46 E-value=2.1e-13 Score=129.68 Aligned_cols=114 Identities=18% Similarity=0.286 Sum_probs=91.9
Q ss_pred EEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC-CC----CccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecC
Q psy3727 80 TVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN-GR----PSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNS 152 (232)
Q Consensus 80 ~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~-g~----~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~ 152 (232)
+|||+||+|++|.++|...|+.. .|+.|.|.+.+ .. +.|||||+|.++++|++|++. +++.|+|+.|+|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 39999999999999999999999 88888888765 32 569999999999999999998 9999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCCCC
Q psy3727 153 SSPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLCPY 220 (232)
Q Consensus 153 ~~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~~~ 220 (232)
.++....+ ...... .....|.|+||||.+|..+|+++| |+|
T Consensus 597 ~k~~~~~g-------------------------K~~~~k-k~~tKIlVRNipFeAt~rEVr~LF-~aF 637 (725)
T KOG0110|consen 597 NKPASTVG-------------------------KKKSKK-KKGTKILVRNIPFEATKREVRKLF-TAF 637 (725)
T ss_pred Cccccccc-------------------------cccccc-cccceeeeeccchHHHHHHHHHHH-hcc
Confidence 44211100 000011 113579999999999999999999 665
No 37
>smart00362 RRM_2 RNA recognition motif.
Probab=99.46 E-value=3.8e-13 Score=91.71 Aligned_cols=70 Identities=27% Similarity=0.400 Sum_probs=64.1
Q ss_pred EEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEE
Q psy3727 80 TVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELF 149 (232)
Q Consensus 80 ~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~ 149 (232)
+|+|+|||..+++++|+++|+++ .+..+.+..+.+.++++|||+|.+.++|++|++. ++..+.++.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999 7888888877677889999999999999999997 8899999998873
No 38
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.43 E-value=4.5e-13 Score=128.69 Aligned_cols=79 Identities=10% Similarity=0.186 Sum_probs=74.2
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
.++|||+|||+++++++|+++|+.| .|+.|+|..+. ++++|||||+|+++++|++||+. |+..|+|+.|+|..+.+
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 3799999999999999999999999 89999999987 78999999999999999999998 99999999999999887
Q ss_pred CCC
Q psy3727 154 SPR 156 (232)
Q Consensus 154 ~~~ 156 (232)
++.
T Consensus 284 pP~ 286 (612)
T TIGR01645 284 PPD 286 (612)
T ss_pred Ccc
Confidence 653
No 39
>KOG0122|consensus
Probab=99.42 E-value=6e-13 Score=113.10 Aligned_cols=77 Identities=23% Similarity=0.347 Sum_probs=73.2
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
..+|.|.|||.+++|+||+++|.+| .|.+|.|.+|+ |.+||||||.|.+.+||.+||+. |+.-+++--|+|.++++
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP 268 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKP 268 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCC
Confidence 4899999999999999999999999 88899999998 99999999999999999999998 99999999999999987
Q ss_pred C
Q psy3727 154 S 154 (232)
Q Consensus 154 ~ 154 (232)
+
T Consensus 269 ~ 269 (270)
T KOG0122|consen 269 S 269 (270)
T ss_pred C
Confidence 5
No 40
>KOG0145|consensus
Probab=99.42 E-value=1.2e-12 Score=112.30 Aligned_cols=108 Identities=14% Similarity=0.235 Sum_probs=95.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEe
Q psy3727 75 GPSRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFL 150 (232)
Q Consensus 75 ~~s~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~ 150 (232)
.++...|.|--||-..|++||+.+|... +|+.|.+++|+ |++-||+||.|-+++||++||.. |+-.|+.+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 3445779999999999999999999999 99999999999 99999999999999999999997 99999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhC
Q psy3727 151 NSSSPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 151 ~~~~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
+++.... -+ ...|.|.+||-+.|..||.++|.
T Consensus 118 ARPSs~~--------------------------------Ik---~aNLYvSGlPktMtqkelE~iFs 149 (360)
T KOG0145|consen 118 ARPSSDS--------------------------------IK---DANLYVSGLPKTMTQKELEQIFS 149 (360)
T ss_pred ccCChhh--------------------------------hc---ccceEEecCCccchHHHHHHHHH
Confidence 9886210 11 23688899999999999999994
No 41
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.41 E-value=1.3e-12 Score=89.53 Aligned_cols=71 Identities=24% Similarity=0.349 Sum_probs=65.8
Q ss_pred EEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEe
Q psy3727 80 TVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFL 150 (232)
Q Consensus 80 ~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~ 150 (232)
+|+|+|||+.+++++|+++|+.+ .|..+.+..+. ..++++|||+|.+.++|+.|++. ++..++++.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999 88899999887 77899999999999999999998 88889999998863
No 42
>KOG4207|consensus
Probab=99.41 E-value=3.4e-13 Score=112.20 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=72.6
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCC
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~ 154 (232)
.+|.|-||.|.+|.++|+.+|+.| .|.+|.|+.|+ ..++|||||.|.+..||+.||+. |+.+|+||.|.|.+|.--
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~aryg 93 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYG 93 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcC
Confidence 689999999999999999999999 89999999999 88999999999999999999998 999999999999988654
No 43
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.41 E-value=8.9e-13 Score=111.04 Aligned_cols=126 Identities=17% Similarity=0.250 Sum_probs=93.9
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC-
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS- 153 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~- 153 (232)
++|||+|||+++|+++|.++|++| .+..|.|..++ ++++|+|||+|.++++|..|++. ++..|.++.|.|..+..
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~ 195 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPA 195 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccc
Confidence 899999999999999999999999 78899999996 99999999999999999999998 88999999999999653
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhC
Q psy3727 154 -SPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 154 -~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
.++...... ......... .............+.+.++++.++..++...|.
T Consensus 196 ~~~~~~~~~~------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (306)
T COG0724 196 SQPRSELSNN------------LDASFAKKL-SRGKALLLEKSDNLYVGNLPLKTAEEELADLFK 247 (306)
T ss_pred cccccccccc------------cchhhhccc-cccccccccccceeeccccccccchhHHHHhcc
Confidence 111110000 000000000 000011122245688889999999999999985
No 44
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.40 E-value=1.1e-12 Score=122.40 Aligned_cols=76 Identities=21% Similarity=0.331 Sum_probs=71.3
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
..+|||+|||+++|+++|+++|++| .|+.|.|+.+. ++++|||||+|.+.++|++||+. |+..|.++.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 3799999999999999999999999 88899999987 69999999999999999999986 99999999999999754
No 45
>KOG0117|consensus
Probab=99.39 E-value=9.6e-13 Score=119.76 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=91.8
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC--CceEEEEeecC---CCCccEEEEEeCCHHHHHHHHHh---CCceeeeeEEEEE
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV--VPVHVDIHYEN---GRPSGEADVDFATHEDAMQAMSK---DRTNMQHRYIELF 149 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~--~i~~v~i~~d~---g~~kG~afVeF~s~eda~~Al~~---~g~~i~gR~I~V~ 149 (232)
+++|||+|+|-+-++++|.+-|++. .|++|.|.... .+++|||||+|+|+..|..|-.+ ..-.+.|..|.|.
T Consensus 164 n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVd 243 (506)
T KOG0117|consen 164 NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVD 243 (506)
T ss_pred cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceee
Confidence 5999999999999999999999998 78898887655 88999999999999999999987 4567899999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc-ceEEEcCCCccccHHHHHhhhC
Q psy3727 150 LNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQ-AYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 150 ~~~~~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~-~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
++.+.... ..+ .... ..|+|+||+-++|+|.|+++|+
T Consensus 244 WAep~~e~------------------------------ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~ 281 (506)
T KOG0117|consen 244 WAEPEEEP------------------------------DED-TMSKVKVLYVRNLMESTTEETLKKLFN 281 (506)
T ss_pred ccCcccCC------------------------------Chh-hhhheeeeeeeccchhhhHHHHHHHHH
Confidence 99887311 111 1112 3589999999999999999996
No 46
>KOG0109|consensus
Probab=99.38 E-value=5.3e-13 Score=115.94 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=86.7
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCCCC
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSSPR 156 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~~~ 156 (232)
..|||+|||-++++++|+.+|++| +|+.+.|+++ |+||..++...++.||.. ++..|+|..|.|..++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK-- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK-- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc------cceEEeecccccHHHHhhcccceecceEEEEEecccc--
Confidence 469999999999999999999999 9999999876 999999999999999996 999999999999987665
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhC
Q psy3727 157 GGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 157 ~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
+.....++|.||.+.+|.+||++.|+
T Consensus 75 -----------------------------------sk~stkl~vgNis~tctn~ElRa~fe 100 (346)
T KOG0109|consen 75 -----------------------------------SKASTKLHVGNISPTCTNQELRAKFE 100 (346)
T ss_pred -----------------------------------CCCccccccCCCCccccCHHHhhhhc
Confidence 11235789999999999999999995
No 47
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=1.3e-12 Score=120.41 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=69.5
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCH--HHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATH--EDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~--eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
.-+|||+||+|++|++||.+.|++| .|.+|.|+++.| +|||||+|.+. .++++||+. |+..+.||.|+|..+++
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 5789999999999999999999999 899999996657 89999999987 789999997 99999999999999877
Q ss_pred C
Q psy3727 154 S 154 (232)
Q Consensus 154 ~ 154 (232)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 3
No 48
>smart00360 RRM RNA recognition motif.
Probab=99.38 E-value=1.7e-12 Score=87.98 Aligned_cols=66 Identities=23% Similarity=0.404 Sum_probs=61.2
Q ss_pred EcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEE
Q psy3727 83 MRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIEL 148 (232)
Q Consensus 83 V~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V 148 (232)
|+|||+.+++++|+++|++| .|..+.|..++ ++++++|||+|.+.++|++|++. ++..++++.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 67999999999999999999 78899998876 78899999999999999999997 889999999887
No 49
>KOG0130|consensus
Probab=99.37 E-value=7.9e-13 Score=103.42 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=76.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEE
Q psy3727 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYI 146 (232)
Q Consensus 71 ~~~~~~s~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I 146 (232)
...+.+ ++.|||.++..++||+||.+.|..| +|..|+|-.|+ |-.||||.|||++.++|++||+. |+..|-+..|
T Consensus 66 PqrSVE-GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 66 PQRSVE-GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred Ccccee-eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 333443 4999999999999999999999999 99999999998 99999999999999999999997 9999999999
Q ss_pred EEEecCCC
Q psy3727 147 ELFLNSSS 154 (232)
Q Consensus 147 ~V~~~~~~ 154 (232)
.|.++..+
T Consensus 145 ~VDw~Fv~ 152 (170)
T KOG0130|consen 145 SVDWCFVK 152 (170)
T ss_pred eEEEEEec
Confidence 99999776
No 50
>KOG0126|consensus
Probab=99.32 E-value=4.6e-13 Score=109.43 Aligned_cols=76 Identities=18% Similarity=0.294 Sum_probs=71.7
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCC
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~ 154 (232)
..|||+||||+.||.||.-.|++| +||+|.|+.|+ |++|||||+.|++..+-.-|+.. |+..|.+|.|+|+-....
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Y 115 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNY 115 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecccc
Confidence 799999999999999999999999 99999999998 99999999999999999999998 999999999999766543
No 51
>KOG0108|consensus
Probab=99.29 E-value=5.9e-12 Score=116.77 Aligned_cols=77 Identities=19% Similarity=0.414 Sum_probs=74.1
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCC
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~ 154 (232)
++|||+|+||+++|++|.++|++. .|+.+++++|+ |++|||||++|.++++|+.|++. |+.++.+|+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999 88999999998 99999999999999999999998 999999999999998876
Q ss_pred C
Q psy3727 155 P 155 (232)
Q Consensus 155 ~ 155 (232)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 5
No 52
>KOG0144|consensus
Probab=99.26 E-value=8.1e-12 Score=113.40 Aligned_cols=106 Identities=13% Similarity=0.233 Sum_probs=88.8
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh--CCceeee--eEEEEEe
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK--DRTNMQH--RYIELFL 150 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~--~g~~i~g--R~I~V~~ 150 (232)
.-.+||+-+|-.+||+||+++|++| .|.+|.|++|+ +.++|||||.|.+.+||.+|+.. |.+.|-| ..|.|++
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 4789999999999999999999999 88899999999 99999999999999999999996 6666654 5678877
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhC
Q psy3727 151 NSSSPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 151 ~~~~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
+..... +-.....|+|+-|+-.+||.||+++|.
T Consensus 114 Ad~E~e----------------------------------r~~~e~KLFvg~lsK~~te~evr~iFs 146 (510)
T KOG0144|consen 114 ADGERE----------------------------------RIVEERKLFVGMLSKQCTENEVREIFS 146 (510)
T ss_pred cchhhh----------------------------------ccccchhhhhhhccccccHHHHHHHHH
Confidence 655411 112233678888999999999999996
No 53
>KOG4212|consensus
Probab=99.26 E-value=2.2e-11 Score=110.84 Aligned_cols=70 Identities=30% Similarity=0.438 Sum_probs=65.3
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEe
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFL 150 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~ 150 (232)
.++|||+|||+++||+.|++-|.+| .|..+.| +.+|++|| .|.|.++++|+.|+.. |+..|++|.|+|.+
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadi-me~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADI-MENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhh-hccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 3999999999999999999999999 8888888 66688988 9999999999999998 99999999999976
No 54
>KOG0123|consensus
Probab=99.26 E-value=1.5e-11 Score=112.44 Aligned_cols=114 Identities=15% Similarity=0.158 Sum_probs=93.4
Q ss_pred EEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCCCC
Q psy3727 80 TVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSSPR 156 (232)
Q Consensus 80 ~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~~~ 156 (232)
.|||.||+.+++.++|.++|+.| +|+.|.+..+. | +||+ ||+|+++++|++||++ |+..+.++.|.|-+...++.
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 49999999999999999999999 99999999999 7 9999 9999999999999998 99999999999988877643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCCCCCC
Q psy3727 157 GGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLCPYHR 222 (232)
Q Consensus 157 ~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~~~~~ 222 (232)
+.. +.......-.-|.+.+++.++|.++|.++|...-+.
T Consensus 156 r~~---------------------------~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i 194 (369)
T KOG0123|consen 156 REA---------------------------PLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSI 194 (369)
T ss_pred hcc---------------------------cccchhhhhhhhheeccccccchHHHHHhhcccCcc
Confidence 220 000011112346677899999999999999765433
No 55
>KOG0114|consensus
Probab=99.25 E-value=3.9e-11 Score=89.99 Aligned_cols=76 Identities=21% Similarity=0.349 Sum_probs=68.7
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~ 154 (232)
...|||+||||++|.+++.++|..| .|..|+|-.++ ..+|-|||.|++..||++|++. ++..+.+|++.|.+-.+.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k-~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK-ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc-CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 6899999999999999999999999 88888886554 4679999999999999999998 999999999999876654
No 56
>KOG0111|consensus
Probab=99.24 E-value=6.7e-12 Score=105.48 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=74.3
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
..+|||++|..++||.-|...|-+| .|++|.|+.|. ++++|||||+|+..|||.+||.. |..+|-||.|+|.++.+
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 4899999999999999999999999 99999999987 99999999999999999999998 99999999999999988
Q ss_pred CC
Q psy3727 154 SP 155 (232)
Q Consensus 154 ~~ 155 (232)
..
T Consensus 90 ~k 91 (298)
T KOG0111|consen 90 EK 91 (298)
T ss_pred cc
Confidence 64
No 57
>KOG0124|consensus
Probab=99.22 E-value=4.6e-12 Score=113.09 Aligned_cols=127 Identities=15% Similarity=0.191 Sum_probs=97.1
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCC
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~ 154 (232)
|.|||+.+.|+..|+.|+..|.+| -|..|.+--|. +++||||||||+-+|.|+-|++. |+.+|+||.|+|-.-+.-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 789999999999999999999999 78899998888 99999999999999999999998 999999999998743332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCC--CCCCCCCCCCC
Q psy3727 155 PRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLC--PYHRHSRPKAP 229 (232)
Q Consensus 155 ~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~--~~~~~~~~~~~ 229 (232)
+... ...+..+.....-..++|..+..+.+++||+.+|++ +--.|-.+.+|
T Consensus 194 pQAQ------------------------piID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~p 246 (544)
T KOG0124|consen 194 PQAQ------------------------PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP 246 (544)
T ss_pred cccc------------------------hHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccC
Confidence 1100 000111111111235777789999999999999986 33345555554
No 58
>KOG1365|consensus
Probab=99.17 E-value=7.3e-11 Score=106.01 Aligned_cols=120 Identities=24% Similarity=0.365 Sum_probs=92.9
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCCCceE--EEEeecC-CCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEecCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPVVPVH--VDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~~i~~--v~i~~d~-g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~~~~ 154 (232)
...|..++|||..++.+|..||+...|.. +.|+..- ++..|++.|.|.|+|.-+-|++++++.+..|+|+|..+...
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge 139 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGE 139 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCch
Confidence 47788999999999999999999886663 4455555 89999999999999999999999999999999999988776
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCcceEEEcCCCccccHHHHHhhhC
Q psy3727 155 PRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFE-RRNPNQAYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 155 ~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~-~~~~~~~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
+.-.-.+ +.+..... -...+...|.+++|||+||+.||.+||.
T Consensus 140 ~f~~iag--------------------g~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~ 183 (508)
T KOG1365|consen 140 EFLKIAG--------------------GTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFG 183 (508)
T ss_pred hheEecC--------------------CccccCCCCCCcccceEEEecCCCCCcchHHHHHhcC
Confidence 3111000 00111111 1112357899999999999999999997
No 59
>KOG0148|consensus
Probab=99.17 E-value=1.4e-10 Score=100.07 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCC
Q psy3727 77 SRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 77 s~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~ 154 (232)
.+++|||+|++-.+||++|++.|++| .|.+|+|.++ +|||||.|+++|.|..||.. |+++|+|..|++.+-+..
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc----cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 36999999999999999999999999 8999999976 58999999999999999998 999999999999988776
Q ss_pred C
Q psy3727 155 P 155 (232)
Q Consensus 155 ~ 155 (232)
.
T Consensus 239 ~ 239 (321)
T KOG0148|consen 239 D 239 (321)
T ss_pred C
Confidence 4
No 60
>KOG0123|consensus
Probab=99.12 E-value=2.2e-10 Score=104.86 Aligned_cols=96 Identities=17% Similarity=0.181 Sum_probs=86.9
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCCCC
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSSPR 156 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~~~ 156 (232)
.+|||+ .++||..|.++|+++ .++.|+++.|.+ +-|||||.|.+++||++||+. |-..|.|+.|+|.++...+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~- 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDAT-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP- 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCC-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC-
Confidence 358998 999999999999999 899999999985 999999999999999999998 9999999999999876651
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCC
Q psy3727 157 GGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 157 ~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
..|+|.||+.++|..+|.++|.+
T Consensus 77 ---------------------------------------~~~~i~nl~~~~~~~~~~d~f~~ 99 (369)
T KOG0123|consen 77 ---------------------------------------SLVFIKNLDESIDNKSLYDTFSE 99 (369)
T ss_pred ---------------------------------------ceeeecCCCcccCcHHHHHHHHh
Confidence 12899999999999999999964
No 61
>smart00361 RRM_1 RNA recognition motif.
Probab=99.11 E-value=2.7e-10 Score=80.04 Aligned_cols=57 Identities=19% Similarity=0.301 Sum_probs=49.9
Q ss_pred HHHHHhccC----CC-CceEEE-EeecC----CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEE
Q psy3727 92 ERDVADFFR----PV-VPVHVD-IHYEN----GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIEL 148 (232)
Q Consensus 92 e~dl~~~F~----~~-~i~~v~-i~~d~----g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V 148 (232)
+++|+++|+ .| .|.+|. |+.++ ++++|+|||+|+++++|++|++. |+..+.+|.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 688999999 88 788775 55544 78999999999999999999997 999999999976
No 62
>KOG0116|consensus
Probab=99.10 E-value=3.7e-10 Score=104.39 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=67.5
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEecCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~~~~ 154 (232)
..+|||+|||+++|+.+|+++|+.| .|+...|..-. ++...||||+|++.++++.||+.+...|+++++.|......
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 3569999999999999999999999 77766665433 55559999999999999999999999999999999887775
Q ss_pred C
Q psy3727 155 P 155 (232)
Q Consensus 155 ~ 155 (232)
.
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 63
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.02 E-value=1.2e-09 Score=73.03 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=47.9
Q ss_pred HHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEec
Q psy3727 95 VADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLN 151 (232)
Q Consensus 95 l~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~ 151 (232)
|.++|++| +|.+|.+..+. +++|||+|++.++|++|++. |+..+.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999 88899887653 68999999999999999997 999999999999875
No 64
>KOG0145|consensus
Probab=99.00 E-value=2.1e-09 Score=92.52 Aligned_cols=77 Identities=14% Similarity=0.224 Sum_probs=73.0
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
+++|||=||..++.|.-|+++|.+| .|..|.|++|. .+-|||+||.+.+.++|..||.. |+..|.+|.+.|.+.+.
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 6999999999999999999999999 88999999997 88999999999999999999997 99999999999988766
Q ss_pred C
Q psy3727 154 S 154 (232)
Q Consensus 154 ~ 154 (232)
+
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 5
No 65
>KOG0144|consensus
Probab=98.99 E-value=3.6e-10 Score=102.86 Aligned_cols=79 Identities=19% Similarity=0.210 Sum_probs=71.6
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CC-ceeeee--EEEEEec
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK-DR-TNMQHR--YIELFLN 151 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~-~g-~~i~gR--~I~V~~~ 151 (232)
++.|||+-|+-.+||.||+++|+.| .|++|.|++|. +.++|||||.|.+.|.|.+||+. |+ ..|.|. +|.|+++
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 5899999999999999999999999 89999999999 99999999999999999999997 54 467764 7999999
Q ss_pred CCCCC
Q psy3727 152 SSSPR 156 (232)
Q Consensus 152 ~~~~~ 156 (232)
.+++.
T Consensus 204 Dtqkd 208 (510)
T KOG0144|consen 204 DTQKD 208 (510)
T ss_pred ccCCC
Confidence 88753
No 66
>KOG0106|consensus
Probab=98.96 E-value=1.6e-09 Score=91.77 Aligned_cols=120 Identities=23% Similarity=0.266 Sum_probs=86.6
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCCCC
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSSPR 156 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~~~ 156 (232)
..|||++||+.+.+.||+.||..| ++.+|.|. .||+||+|++..||..|+.. |+.+|.+-.+.|.++.....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee------cccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 359999999999999999999999 88788764 47999999999999999997 99998887777777665421
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCCCC
Q psy3727 157 GGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLCPY 220 (232)
Q Consensus 157 ~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~~~ 220 (232)
.. + .++++ + +.....-+.....+...+.+.+|+..+.|+||.+.| |++
T Consensus 76 ~~--g--------~~~~g----~-r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~-~~~ 123 (216)
T KOG0106|consen 76 GR--G--------RPRGG----D-RRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHF-RPA 123 (216)
T ss_pred cc--C--------CCCCC----C-ccchhhccCCcccccceeeeccchhhhhHHHHhhhh-ccc
Confidence 11 0 00000 0 000011112222334678899999999999999999 543
No 67
>KOG4205|consensus
Probab=98.94 E-value=8.7e-10 Score=98.46 Aligned_cols=77 Identities=21% Similarity=0.356 Sum_probs=73.3
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEecCCCC
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSP 155 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~~~~~ 155 (232)
..|||++||.++++++|+++|+++ .|.++.+++|. .+++||+||+|.+++++++++.+.-+.|+++.|+|..|.++.
T Consensus 98 kkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 98 KKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred eEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccchh
Confidence 589999999999999999999999 78899999998 899999999999999999999999999999999999998875
No 68
>KOG0147|consensus
Probab=98.91 E-value=1.8e-09 Score=100.68 Aligned_cols=73 Identities=22% Similarity=0.376 Sum_probs=68.3
Q ss_pred EEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 81 VHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 81 vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
|+|+||.+++|+++|+..|++| .|..|.+++|. |++|||+||+|.+.++|++|++. |+-+|-||.|+|..-..
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 8999999999999999999999 89999999995 99999999999999999999987 99999999999866544
No 69
>KOG0533|consensus
Probab=98.90 E-value=3.2e-09 Score=91.62 Aligned_cols=76 Identities=29% Similarity=0.522 Sum_probs=71.7
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCC
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~ 154 (232)
+.|.|.|||+.|+++||+++|.+| .+..+.|-+++ |++.|.|-|.|...+||.+|+++ ++..++|+.|.+.+....
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 889999999999999999999999 89999999999 99999999999999999999998 899999999988776654
No 70
>KOG1995|consensus
Probab=98.89 E-value=2.4e-08 Score=89.26 Aligned_cols=78 Identities=26% Similarity=0.360 Sum_probs=70.9
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCCCce---------EEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeE
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPVVPV---------HVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRY 145 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~~i~---------~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~ 145 (232)
..+|||.+||..+++++|.+||.+|.++ .|.|.+|+ +++||.|.|.|++...|++||++ +++.+.+..
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 5789999999999999999999999443 37788887 99999999999999999999998 999999999
Q ss_pred EEEEecCCCC
Q psy3727 146 IELFLNSSSP 155 (232)
Q Consensus 146 I~V~~~~~~~ 155 (232)
|+|.++..++
T Consensus 146 ikvs~a~~r~ 155 (351)
T KOG1995|consen 146 IKVSLAERRT 155 (351)
T ss_pred chhhhhhhcc
Confidence 9999998775
No 71
>KOG4307|consensus
Probab=98.82 E-value=7.7e-08 Score=92.17 Aligned_cols=71 Identities=27% Similarity=0.536 Sum_probs=65.3
Q ss_pred EEEEcCCCCCCCHHHHHhccCCCCc--eEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEe
Q psy3727 80 TVHMRGLPFRANERDVADFFRPVVP--VHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFL 150 (232)
Q Consensus 80 ~vfV~nLp~~~te~dl~~~F~~~~i--~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~ 150 (232)
+|.|.|+||++|.+||.+||..|++ .+|.|.++. |.++|+|.|-|++.++|.+|... +++.|..|.|.|.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 8999999999999999999999954 478888877 99999999999999999999986 99999999998864
No 72
>KOG4209|consensus
Probab=98.79 E-value=7.6e-09 Score=89.06 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=72.4
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEecCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~~~~ 154 (232)
...|||+|+.+.+|.++|+.+|+.| .+..|.|++|+ +++||||||+|.+.+.+++|+..|+..|.++.|+|......
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeeeee
Confidence 4789999999999999999999999 88889999998 78999999999999999999999999999999999887765
No 73
>KOG0132|consensus
Probab=98.78 E-value=1.1e-07 Score=91.93 Aligned_cols=73 Identities=21% Similarity=0.343 Sum_probs=67.7
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~ 154 (232)
..||||+.|+.+++|+||.++|+.| +|.+|.++- ++++|||.+....||++||.+ +...+..+.|+|.++-.+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 5899999999999999999999999 899998864 678999999999999999998 999999999999998766
No 74
>KOG1457|consensus
Probab=98.72 E-value=1e-07 Score=80.58 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=62.8
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--C-CCccEEEEEeCCHHHHHHHHHh-CCceee---eeEEEEEe
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--G-RPSGEADVDFATHEDAMQAMSK-DRTNMQ---HRYIELFL 150 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g-~~kG~afVeF~s~eda~~Al~~-~g~~i~---gR~I~V~~ 150 (232)
.||||.+||.++...||..+|..| .-+...|.+.. + -.+-+|||+|.+..+|++|+.. |+..++ +..+.|.+
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiEl 114 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIEL 114 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeee
Confidence 799999999999999999999998 66666666554 2 2457999999999999999998 999886 45677777
Q ss_pred cCCC
Q psy3727 151 NSSS 154 (232)
Q Consensus 151 ~~~~ 154 (232)
++..
T Consensus 115 AKSN 118 (284)
T KOG1457|consen 115 AKSN 118 (284)
T ss_pred hhcC
Confidence 6554
No 75
>KOG0153|consensus
Probab=98.71 E-value=4.4e-08 Score=87.29 Aligned_cols=73 Identities=23% Similarity=0.223 Sum_probs=66.8
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh--CCceeeeeEEEEEecCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK--DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~--~g~~i~gR~I~V~~~~~~ 154 (232)
-.+|||++|-..++|+||+++|.+| +|..|.+... +++|||+|.+.+.|+.|.++ |...|+|+.|.|.+.++.
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRPK 303 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCCc
Confidence 5899999998899999999999999 8888888754 46999999999999999998 899999999999988883
No 76
>KOG0415|consensus
Probab=98.70 E-value=2.9e-08 Score=88.74 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEec
Q psy3727 76 PSRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLN 151 (232)
Q Consensus 76 ~s~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~ 151 (232)
+...+|||--|..-+|.+||.-+|+.| .|+.|.|+.|. |.+--||||||++.+++++|.=+ +...|+.|.|.|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 345899999999999999999999999 89999999998 88999999999999999999987 999999999999887
Q ss_pred CC
Q psy3727 152 SS 153 (232)
Q Consensus 152 ~~ 153 (232)
..
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 55
No 77
>KOG0109|consensus
Probab=98.68 E-value=3.1e-08 Score=86.55 Aligned_cols=71 Identities=23% Similarity=0.316 Sum_probs=66.5
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCCC
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSSP 155 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~~ 155 (232)
.+|+|+||.+.||.+||++.|++| .|+.+.|++| ++||.|+-.++|..||+. |+++++|+.+.|.+++.+-
T Consensus 79 tkl~vgNis~tctn~ElRa~fe~ygpviecdivkd------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 79 TKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred cccccCCCCccccCHHHhhhhcccCCceeeeeecc------eeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 889999999999999999999999 7889999865 999999999999999986 9999999999999998764
No 78
>KOG0131|consensus
Probab=98.66 E-value=2.7e-08 Score=81.61 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=68.5
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCCCceE--EEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPVVPVH--VDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNS 152 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~~i~~--v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~ 152 (232)
+..|||+||.++++|.-|.+.|+.|.++- =.|+.+. +.++||+||.|++.|.+.+||.. |++.+..|+|.|..+.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 58899999999999999999999994332 2566665 89999999999999999999998 9999999999999988
Q ss_pred CC
Q psy3727 153 SS 154 (232)
Q Consensus 153 ~~ 154 (232)
.+
T Consensus 176 k~ 177 (203)
T KOG0131|consen 176 KK 177 (203)
T ss_pred ec
Confidence 76
No 79
>KOG1190|consensus
Probab=98.65 E-value=4.8e-07 Score=82.27 Aligned_cols=131 Identities=13% Similarity=0.141 Sum_probs=94.9
Q ss_pred CcEEEEcCC-CCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCC
Q psy3727 78 RHTVHMRGL-PFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 78 ~~~vfV~nL-p~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~ 154 (232)
..+|-|.|| ++.+|.+.|..+|.-| +|.+|.|.++++ =-|.|.+.+...|+-|++. +++.|.|+.|+|.+++..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 488999998 7789999999999999 999999999763 3699999999999999997 999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCCC
Q psy3727 155 PRGGVGGSGSIGGFGGSGGGRLGGFG--------GSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLCP 219 (232)
Q Consensus 155 ~~~~~~g~~g~gg~gg~~gg~~gg~g--------~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~~ 219 (232)
.-.-.... ....+..-.|. .+++ .-+..-.|....+++.|+|.++++|||++.|+.+
T Consensus 374 ~vqlp~eg-------q~d~glT~dy~~spLhrfkkpgs-KN~~ni~PpsatlHlsnip~svsee~lk~~f~~~ 438 (492)
T KOG1190|consen 374 NVQLPREG-------QEDQGLTKDYGNSPLHRFKKPGS-KNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEP 438 (492)
T ss_pred cccCCCCC-------CccccccccCCCCchhhccCccc-ccccccCCchhheeeccCCcccchhHHHHhhhcC
Confidence 31110000 00001111111 1111 1111222434679999999999999999999854
No 80
>KOG4208|consensus
Probab=98.62 E-value=8.4e-08 Score=80.09 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=67.0
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-C-ceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-V-PVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNS 152 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~-i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~ 152 (232)
...++|.-||+-+-+.+|..+|.++ . +.++++-+++ |.+||||||||++++.|+=|-+. |...|.++-|++..-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 4789999999999999999999998 4 5567776776 99999999999999999999986 9999999988887654
Q ss_pred CC
Q psy3727 153 SS 154 (232)
Q Consensus 153 ~~ 154 (232)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 43
No 81
>KOG0147|consensus
Probab=98.62 E-value=9.4e-09 Score=96.03 Aligned_cols=124 Identities=19% Similarity=0.172 Sum_probs=95.7
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEecCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~~~~ 154 (232)
..+||+--|+-.+++-||.+||+.+ +|.+|.|+.|+ +++||.|||||.+.+.+..||.+.++.+.|-+|.|..+...
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEae 258 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAE 258 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHH
Confidence 4688888899999999999999999 88999999998 89999999999999999999999999999999999876554
Q ss_pred CCCC-CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCCCCCCCCC
Q psy3727 155 PRGG-VGGS-GSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLCPYHRHSR 225 (232)
Q Consensus 155 ~~~~-~~g~-~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~~~~~~~~ 225 (232)
.... .... -..+ + -..| ...|.|.||.|..|+++|+..| .||-.+-.
T Consensus 259 knr~a~~s~a~~~k-----------~-----------~~~p-~~rl~vgnLHfNite~~lr~if-epfg~Ie~ 307 (549)
T KOG0147|consen 259 KNRAANASPALQGK-----------G-----------FTGP-MRRLYVGNLHFNITEDMLRGIF-EPFGKIEN 307 (549)
T ss_pred HHHHHhcccccccc-----------c-----------cccc-hhhhhhcccccCchHHHHhhhc-cCccccee
Confidence 2111 0000 0000 0 0111 1117889999999999999999 56655433
No 82
>KOG0110|consensus
Probab=98.59 E-value=2.9e-08 Score=95.09 Aligned_cols=77 Identities=26% Similarity=0.350 Sum_probs=71.1
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
...|+|+||||.+|..+|+++|..| .+..|+|++.. +.++|||||+|-++.+|.+|++. ..+.|-||.+.+.++..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 3689999999999999999999999 99999999874 77899999999999999999997 89999999999998876
Q ss_pred C
Q psy3727 154 S 154 (232)
Q Consensus 154 ~ 154 (232)
.
T Consensus 693 d 693 (725)
T KOG0110|consen 693 D 693 (725)
T ss_pred c
Confidence 5
No 83
>KOG4307|consensus
Probab=98.57 E-value=3.2e-07 Score=88.04 Aligned_cols=140 Identities=13% Similarity=0.074 Sum_probs=99.6
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCCCceEEEEeecC-CCC-ccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEecCCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-GRP-SGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSP 155 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~~i~~v~i~~d~-g~~-kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~~~~~ 155 (232)
.+.|-+++++|++.+.|+++||-...+..++|..+. +.+ +|-++|+|....++++|+++|.+.+-.|+|+|.......
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~ 390 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLG 390 (944)
T ss_pred hheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccc
Confidence 588999999999999999999999888888888888 555 999999999999999999999999999999998877765
Q ss_pred CCCCCCCCCCCC--CCCC-----CCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCCCC
Q psy3727 156 RGGVGGSGSIGG--FGGS-----GGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLCPY 220 (232)
Q Consensus 156 ~~~~~g~~g~gg--~gg~-----~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~~~ 220 (232)
+.+..+...+.+ -.+. .+.-++-.. ++-..++ ..+...+|.|..||+.+++.+++++|...|
T Consensus 391 ~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~-~gq~vp~--P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~ 459 (944)
T KOG4307|consen 391 RNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVR-PGQNVPF--PGGAGGALYVFQLPVMTPIVPPVNKFMGAA 459 (944)
T ss_pred cccCccccccCCCCcccccCCCCCCCcccccC-CCCCCCC--CCCccceEEeccCCccccccchhhhhhhhh
Confidence 433322211111 0000 000000000 0000111 123356899999999999999999998643
No 84
>KOG4206|consensus
Probab=98.56 E-value=4.1e-07 Score=76.94 Aligned_cols=138 Identities=13% Similarity=0.084 Sum_probs=92.8
Q ss_pred cEEEEcCCCCCCCHHHHHh----ccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecC
Q psy3727 79 HTVHMRGLPFRANERDVAD----FFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNS 152 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~----~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~ 152 (232)
.||||.||+..+..++|+. +|++| +|++|...+. .+.+|-|||.|.+.+.|..|+.. ++--+-|++++|.+|.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt-~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT-PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC-CCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 5999999999999999988 99999 7988877654 47889999999999999999997 9999999999999987
Q ss_pred CCCC---CCCCCC---CCCC-----CCCCCCCCCCCCCCC--CCCC-CCC-CCCCCCcceEEEcCCCccccHHHHHhhhC
Q psy3727 153 SSPR---GGVGGS---GSIG-----GFGGSGGGRLGGFGG--SDPS-SPF-ERRNPNQAYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 153 ~~~~---~~~~g~---~g~g-----g~gg~~gg~~gg~g~--~~~~-~~~-~~~~~~~~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
.... +..+-. .... ......---.+-+.. .... .++ ....+....+++.+||-+++.+.|..+|.
T Consensus 89 s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~ 168 (221)
T KOG4206|consen 89 SDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFE 168 (221)
T ss_pred CccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHh
Confidence 7632 100000 0000 000000000000000 0000 001 12234456789999999999999999994
No 85
>KOG1548|consensus
Probab=98.55 E-value=1.7e-07 Score=83.56 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=70.0
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCCCce---------EEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEE
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPVVPV---------HVDIHYEN-GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYI 146 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~~i~---------~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I 146 (232)
+..|||.|||.++|.+++.++|+.|.|+ .|.|..++ |+.||.|.+.|-..|+++-||+. |...|.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 4669999999999999999999999443 48888888 99999999999999999999998 9999999999
Q ss_pred EEEecCCC
Q psy3727 147 ELFLNSSS 154 (232)
Q Consensus 147 ~V~~~~~~ 154 (232)
+|..|.-.
T Consensus 214 rVerAkfq 221 (382)
T KOG1548|consen 214 RVERAKFQ 221 (382)
T ss_pred EEehhhhh
Confidence 99887654
No 86
>KOG0146|consensus
Probab=98.55 E-value=6.8e-08 Score=83.64 Aligned_cols=78 Identities=13% Similarity=0.211 Sum_probs=73.7
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
+|.|||=-||-+.++.||...|-+| .|+...+..|+ +++|-|+||.|+++.++++||.. |+-.|+-+.++|.+.++
T Consensus 285 GCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRP 364 (371)
T KOG0146|consen 285 GCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 364 (371)
T ss_pred cceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCc
Confidence 6999999999999999999999999 89988888888 89999999999999999999997 99999999999999888
Q ss_pred CC
Q psy3727 154 SP 155 (232)
Q Consensus 154 ~~ 155 (232)
+.
T Consensus 365 kd 366 (371)
T KOG0146|consen 365 KD 366 (371)
T ss_pred cc
Confidence 73
No 87
>KOG0124|consensus
Probab=98.45 E-value=3e-07 Score=82.68 Aligned_cols=78 Identities=10% Similarity=0.189 Sum_probs=72.5
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
-+.|||..+..+.+|+||+..|+.| +|+.|.+..+. +.+|||+|+||++..+...||.- |--.|+|.+++|-.+-+
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 3789999999999999999999999 99999999998 78999999999999999999996 98999999999988776
Q ss_pred CC
Q psy3727 154 SP 155 (232)
Q Consensus 154 ~~ 155 (232)
++
T Consensus 290 PP 291 (544)
T KOG0124|consen 290 PP 291 (544)
T ss_pred CC
Confidence 65
No 88
>KOG0105|consensus
Probab=98.44 E-value=2.6e-06 Score=70.38 Aligned_cols=75 Identities=24% Similarity=0.343 Sum_probs=60.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeee----eEEEE
Q psy3727 75 GPSRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQH----RYIEL 148 (232)
Q Consensus 75 ~~s~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~g----R~I~V 148 (232)
..|++.|.|.+||.+.+|+||+++..+. .|+...+.+| |.+.|+|...||++-||.+ +.+.+.. -+|.|
T Consensus 112 rrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-----g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 112 RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-----GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred cccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 3457999999999999999999999998 8888888776 5899999999999999997 5554432 24555
Q ss_pred EecCCC
Q psy3727 149 FLNSSS 154 (232)
Q Consensus 149 ~~~~~~ 154 (232)
+.....
T Consensus 187 ~~~~~~ 192 (241)
T KOG0105|consen 187 RGDENR 192 (241)
T ss_pred cccCCC
Confidence 554443
No 89
>KOG4454|consensus
Probab=98.42 E-value=7.3e-08 Score=81.26 Aligned_cols=77 Identities=13% Similarity=0.073 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEec
Q psy3727 75 GPSRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLN 151 (232)
Q Consensus 75 ~~s~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~ 151 (232)
++.+.||||.||...++|+-|.++|-+. -|++|.|..++ ++.| ||||+|+++..+.-|+++ |+..+.++.|.|.+-
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 3346999999999999999999999999 77899999998 8888 999999999999999998 999999998887654
Q ss_pred C
Q psy3727 152 S 152 (232)
Q Consensus 152 ~ 152 (232)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 3
No 90
>KOG4661|consensus
Probab=98.37 E-value=6.3e-07 Score=84.48 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=70.1
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
+..|+|.+|...+...||+.+|++| +|+.+.++++. =-.+-|+||++.+.++|.+||+. +.++|.||.|.|..+..
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 4789999999999999999999999 99998888876 22467999999999999999998 99999999999998876
Q ss_pred CC
Q psy3727 154 SP 155 (232)
Q Consensus 154 ~~ 155 (232)
.+
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 54
No 91
>KOG0146|consensus
Probab=98.31 E-value=9.2e-07 Score=76.71 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=67.9
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CCc-eeee--eEEEEEec
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK-DRT-NMQH--RYIELFLN 151 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~-~g~-~i~g--R~I~V~~~ 151 (232)
+..|||+=|...-.|+|++.+|..| .+.+|++.... |.+||+|||.|.+..||+.||.. ++. .|-| ..+.|+++
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~A 98 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFA 98 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEec
Confidence 4789999999999999999999999 88899999988 99999999999999999999996 543 3444 45888888
Q ss_pred CCCC
Q psy3727 152 SSSP 155 (232)
Q Consensus 152 ~~~~ 155 (232)
.+.+
T Consensus 99 DTdk 102 (371)
T KOG0146|consen 99 DTDK 102 (371)
T ss_pred cchH
Confidence 7754
No 92
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.27 E-value=3.8e-06 Score=62.90 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=61.0
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC---CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceee----eeEEEE
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV---VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQ----HRYIEL 148 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~---~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~----gR~I~V 148 (232)
.||.|+|+|-..|.++|.+++.+. ...-+-|+.|. ..+.|||||-|.++++|.+-.+. ++..+. .+.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999998753 44456666665 78999999999999999998887 777664 345677
Q ss_pred EecCCC
Q psy3727 149 FLNSSS 154 (232)
Q Consensus 149 ~~~~~~ 154 (232)
.+|+..
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 776554
No 93
>KOG0226|consensus
Probab=98.21 E-value=8.4e-07 Score=76.34 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=69.9
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
++.||.+.|.-+++.+.|...|..| .-....+++|+ +++|||+||.|.+.+|+..|++. |+..++.|.|.+..+.-
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 7999999999999999999999999 66677888887 99999999999999999999997 99999999998866544
Q ss_pred C
Q psy3727 154 S 154 (232)
Q Consensus 154 ~ 154 (232)
+
T Consensus 270 k 270 (290)
T KOG0226|consen 270 K 270 (290)
T ss_pred H
Confidence 4
No 94
>KOG4210|consensus
Probab=98.08 E-value=3.8e-06 Score=74.56 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=69.8
Q ss_pred cEEE-EcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEecCCC
Q psy3727 79 HTVH-MRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 79 ~~vf-V~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~~~~ 154 (232)
.+++ |.+|++.+++++|+.+|..+ .|..|+++.+. +..+|||+|+|.+..++..|+..+...+.++++.|......
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCC
Confidence 6666 99999999999999999999 88899999887 99999999999999999999987777899999999888777
Q ss_pred C
Q psy3727 155 P 155 (232)
Q Consensus 155 ~ 155 (232)
+
T Consensus 265 ~ 265 (285)
T KOG4210|consen 265 P 265 (285)
T ss_pred c
Confidence 4
No 95
>KOG0129|consensus
Probab=98.00 E-value=6.9e-05 Score=70.18 Aligned_cols=127 Identities=15% Similarity=0.112 Sum_probs=77.6
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCCCceEEEEeecC-----CCCcc---EEEEEeCCHHHHHHHHHhCCceeeeeEEEEE
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-----GRPSG---EADVDFATHEDAMQAMSKDRTNMQHRYIELF 149 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~~i~~v~i~~d~-----g~~kG---~afVeF~s~eda~~Al~~~g~~i~gR~I~V~ 149 (232)
...|||++|||+++|++|...|..|..+.|..+... --+|| |+|+.|+++..+++-|..--..-..-+|.|.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vs 338 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKVS 338 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEEe
Confidence 488999999999999999999999977777777322 23788 9999999998888777641111122223332
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCC
Q psy3727 150 LNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 150 ~~~~~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
..+-+.. ...-+--. -...-| ... ....-....+|+|.+||--.|.+||..+|..
T Consensus 339 s~~~k~k-~VQIrPW~--------laDs~f----v~d-~sq~lDprrTVFVGgvprpl~A~eLA~imd~ 393 (520)
T KOG0129|consen 339 SPTIKDK-EVQIRPWV--------LADSDF----VLD-HNQPIDPRRTVFVGGLPRPLTAEELAMIMED 393 (520)
T ss_pred cCccccc-ceeEEeeE--------eccchh----hhc-cCcccCccceEEecCCCCcchHHHHHHHHHH
Confidence 2211110 00000000 000000 001 0111122468999999999999999999973
No 96
>KOG0106|consensus
Probab=97.99 E-value=3.4e-06 Score=71.62 Aligned_cols=68 Identities=31% Similarity=0.425 Sum_probs=58.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEe
Q psy3727 77 SRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFL 150 (232)
Q Consensus 77 s~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~ 150 (232)
+.+.|+|.+|+..+.|++|.++|.++ .+..+.+ ..+++||+|++++||+.||++ ++..|.++.|.|..
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 36999999999999999999999999 4433322 346999999999999999998 99999999999943
No 97
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.95 E-value=2.2e-05 Score=56.98 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=45.8
Q ss_pred cEEEEcCCCCCCCHHHHH----hccCCC--CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEec
Q psy3727 79 HTVHMRGLPFRANERDVA----DFFRPV--VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLN 151 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~----~~F~~~--~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~ 151 (232)
..|+|.|||.+.....|+ .++..| +|+.| ..+.|+|.|.+++.|.+|.++ ++..+-|++|.|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 469999999999887755 455577 55555 246899999999999999998 999999999999887
Q ss_pred CCC
Q psy3727 152 SSS 154 (232)
Q Consensus 152 ~~~ 154 (232)
...
T Consensus 75 ~~~ 77 (90)
T PF11608_consen 75 PKN 77 (90)
T ss_dssp --S
T ss_pred CCc
Confidence 443
No 98
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.85 E-value=3.2e-05 Score=58.79 Aligned_cols=67 Identities=22% Similarity=0.284 Sum_probs=41.5
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh---C---CceeeeeEEEEE
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK---D---RTNMQHRYIELF 149 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~---~---g~~i~gR~I~V~ 149 (232)
+.|+|.+++-.++.++|++.|++| .|..|.+... . -.|+|.|.++++|++|+++ . +..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G--~--~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG--D--TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC--C--CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 689999999999999999999999 7777777543 2 3899999999999999995 3 334555444443
No 99
>KOG0128|consensus
Probab=97.80 E-value=2e-06 Score=84.24 Aligned_cols=88 Identities=22% Similarity=0.240 Sum_probs=70.4
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC---CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCC
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV---VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~---~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~ 154 (232)
.++||+||+..+.++||..+|..+ +++.|.+..++++.+|.|||+|.+++++.+||.. +++.++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g------------ 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG------------ 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh------------
Confidence 689999999999999999999987 3334444445589999999999999999999997 444332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhCC
Q psy3727 155 PRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 155 ~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
...|.++|+||.+|+++|+.+|..
T Consensus 736 ----------------------------------------K~~v~i~g~pf~gt~e~~k~l~~~ 759 (881)
T KOG0128|consen 736 ----------------------------------------KISVAISGPPFQGTKEELKSLASK 759 (881)
T ss_pred ----------------------------------------hhhhheeCCCCCCchHHHHhhccc
Confidence 125677888888888888888763
No 100
>KOG4660|consensus
Probab=97.70 E-value=2.2e-05 Score=73.93 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=60.6
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEE
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIE 147 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~ 147 (232)
..+|+|-|||.++++++|..+|+.| +|..|+.... ..|..||+|-+..+|++|++. +..+|.++.|.
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~---~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN---KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc---cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 5899999999999999999999999 8888766543 467999999999999999998 99999999987
No 101
>KOG1456|consensus
Probab=97.66 E-value=0.0086 Score=54.60 Aligned_cols=133 Identities=14% Similarity=0.168 Sum_probs=89.7
Q ss_pred CcEEEEcCCCCC-CCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCC
Q psy3727 78 RHTVHMRGLPFR-ANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 78 ~~~vfV~nLp~~-~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~ 154 (232)
++++.|-+|... ..-+.|..+|-.| +|.+|.+++.+ .|-|.||+.+..+.++|+.. |+..|-|.+|.|..+...
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk---~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK---PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc---cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 699999999765 5666799999999 99999999864 46899999999999999997 888888999999887654
Q ss_pred CCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhC
Q psy3727 155 PRGGVG------GSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 155 ~~~~~~------g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
--.... +.-+-..|.+.+.. .|..++- ...++-.+....|+.-|.|..+|+|.|.++|.
T Consensus 364 ~v~~~~pflLpDgSpSfKdys~SkNn---RFssp~q-AsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~n 428 (494)
T KOG1456|consen 364 FVSPVQPFLLPDGSPSFKDYSGSKNN---RFSSPEQ-ASKNRIQPPSNVLHFFNAPLGVTEEQLIGICN 428 (494)
T ss_pred ccccCCceecCCCCcchhhccccccc---ccCChhH-hhcccccCCcceeEEecCCCccCHHHHHHHhh
Confidence 211000 00000111111111 1111110 00112223345788899999999999999985
No 102
>KOG1457|consensus
Probab=97.52 E-value=7.6e-05 Score=63.48 Aligned_cols=59 Identities=22% Similarity=0.252 Sum_probs=45.4
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCc
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRT 139 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~ 139 (232)
.||||-||..+|||++|+.+|+.| ....++|....|.+ .|||+|++.|.|..||.. .+.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~--vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMP--VAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcc--eEeecHHHHHHHHHHHHHhhcc
Confidence 589999999999999999999988 44333332222443 799999999999999875 443
No 103
>KOG4849|consensus
Probab=97.46 E-value=0.00015 Score=65.31 Aligned_cols=73 Identities=10% Similarity=0.129 Sum_probs=61.5
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC---CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEe
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV---VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFL 150 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~---~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~ 150 (232)
..++||+||-|-+|.+||.+..... .+.++.+..++ |++||||.|...+....++-|+. -.++|.|..-.|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 4789999999999999998888754 55677777676 99999999999999999999997 88888888655543
No 104
>KOG0129|consensus
Probab=97.42 E-value=0.00032 Score=65.80 Aligned_cols=59 Identities=25% Similarity=0.390 Sum_probs=55.4
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCC-C-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRP-V-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK 136 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~-~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~ 136 (232)
..||||++||--+|.++|..+|+. | .|+.|-|.+|. .-+||-|-|+|.+.....+||++
T Consensus 370 rrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 370 RRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 489999999999999999999996 4 88899999995 88999999999999999999995
No 105
>KOG1190|consensus
Probab=97.42 E-value=9.1e-05 Score=67.72 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=82.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh---CCceeeeeEEEEEec
Q psy3727 76 PSRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK---DRTNMQHRYIELFLN 151 (232)
Q Consensus 76 ~s~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~---~g~~i~gR~I~V~~~ 151 (232)
+| ..|+++||||++||+||.+++.+| +|+.+.+.+.+ --||+||++++.|..-+.. ---.|.++.|.|.++
T Consensus 27 pS-kV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk----nQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 27 PS-KVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK----NQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred Cc-ceeEeccCCccccHHHHHHhcccccceeeeeeeccc----hhhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 44 899999999999999999999999 88888776542 2799999999998874442 233567777777766
Q ss_pred CCCCCCCCCCCC-CCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCc-ceEEEcCCCccccHHHHHhhhC
Q psy3727 152 SSSPRGGVGGSG-SIG-----GFGGSGGGRLGGFGGSDPSSPFERRNPNQ-AYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 152 ~~~~~~~~~g~~-g~g-----g~gg~~gg~~gg~g~~~~~~~~~~~~~~~-~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
...........- -++ -+......-. .-. ...........++. ..+.+.+|-|.+|-|=|-++|.
T Consensus 102 n~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~-~~s-~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS 172 (492)
T KOG1190|consen 102 NHSELKTDSQPNQIRGQAVYQAVSSVQEIVL-PLS-ASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFS 172 (492)
T ss_pred hHHHHhccCchhhhhhhhHHhhhhccccccc-ccc-cccccccccCCCceeEEEEeccceeeeEHHHHHHHHh
Confidence 544322111100 000 0000000000 000 00001111222332 4578889999999999999996
No 106
>KOG0120|consensus
Probab=97.34 E-value=0.00018 Score=68.04 Aligned_cols=81 Identities=14% Similarity=0.196 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEE
Q psy3727 74 SGPSRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELF 149 (232)
Q Consensus 74 ~~~s~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~ 149 (232)
.+.+.+.|+|++||...++.+++++...| .+....++++. |.+|||||.+|.++.....|+.- |+..+.+.+|.|.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 33446899999999999999999999988 66677788887 89999999999999999999997 9999999999998
Q ss_pred ecCCC
Q psy3727 150 LNSSS 154 (232)
Q Consensus 150 ~~~~~ 154 (232)
.+...
T Consensus 365 ~A~~g 369 (500)
T KOG0120|consen 365 RAIVG 369 (500)
T ss_pred hhhcc
Confidence 87664
No 107
>KOG4206|consensus
Probab=97.29 E-value=0.001 Score=56.57 Aligned_cols=74 Identities=15% Similarity=0.253 Sum_probs=59.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceee-eeEEEEEe
Q psy3727 74 SGPSRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQ-HRYIELFL 150 (232)
Q Consensus 74 ~~~s~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~-gR~I~V~~ 150 (232)
.++. .++|+.|||.+++.+.|..+|.+| .-..|+++-. .++.|||+|.+...|..|... .+..|- ...|.|..
T Consensus 143 ~ppn-~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~---~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 143 APPN-NILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP---RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred CCCc-eEEEEecCCcchhHHHHHHHHhhCcccceeEeccC---CCceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 4444 999999999999999999999999 7778888764 357999999999998888875 555554 55566655
Q ss_pred c
Q psy3727 151 N 151 (232)
Q Consensus 151 ~ 151 (232)
+
T Consensus 219 a 219 (221)
T KOG4206|consen 219 A 219 (221)
T ss_pred c
Confidence 4
No 108
>KOG0151|consensus
Probab=97.25 E-value=0.00088 Score=65.08 Aligned_cols=76 Identities=16% Similarity=0.119 Sum_probs=65.2
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC-----CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEec
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN-----GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLN 151 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~-----g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~ 151 (232)
.-|||.||+..++++.|...|..| -+..|.|+.-+ -+..-++||-|-+..||++|++. ++..+..+.+++-++
T Consensus 175 TNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 175 TNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred cceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence 679999999999999999999988 55566666433 55677999999999999999998 999999999998877
Q ss_pred CCC
Q psy3727 152 SSS 154 (232)
Q Consensus 152 ~~~ 154 (232)
..-
T Consensus 255 k~V 257 (877)
T KOG0151|consen 255 KAV 257 (877)
T ss_pred ccc
Confidence 543
No 109
>KOG0128|consensus
Probab=97.23 E-value=0.00011 Score=72.41 Aligned_cols=77 Identities=19% Similarity=0.373 Sum_probs=70.3
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~ 154 (232)
...|+|+|+||.+|.++|+.+++.. ++.++.++..+ |++||.|+|.|.++.++..++.. +...+.-+.++|..+.+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 4789999999999999999999999 88888888888 99999999999999999999998 888888888888886653
No 110
>KOG4210|consensus
Probab=97.22 E-value=0.00039 Score=61.81 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=81.5
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHhCC-ceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSKDR-TNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~~g-~~i~gR~I~V~~~~~ 153 (232)
-.++|++++.+.+.+.++..++..+ ..+.+.+.... ..++++++|.|+..+.+..||.... ..+..+.++..+...
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~ 167 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTR 167 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccc
Confidence 4789999999999999999999887 55555554433 8899999999999999999999865 466666666655554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCccccHHHHHhhhC
Q psy3727 154 SPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQAYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 154 ~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
........ ... ....+......+.+|++++|++||..+|.
T Consensus 168 ~~~~~~n~-----------------------~~~-~~~~~s~~~~~~~~~~f~~~~d~~~~~~~ 207 (285)
T KOG4210|consen 168 RGLRPKNK-----------------------LSR-LSSGPSDTIFFVGELDFSLTRDDLKEHFV 207 (285)
T ss_pred ccccccch-----------------------hcc-cccCccccceeecccccccchHHHhhhcc
Confidence 42110000 000 01122234556889999999999996664
No 111
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.11 E-value=0.0015 Score=44.87 Aligned_cols=52 Identities=23% Similarity=0.429 Sum_probs=45.6
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC----CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV----VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~----~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~ 136 (232)
..|+|++| -+.+.+||+.||..| .+.+|..+-|. -|-|.|.+++.|.+||..
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALVA 61 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHHc
Confidence 57999998 458889999999988 78899999885 689999999999999963
No 112
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.10 E-value=0.001 Score=59.78 Aligned_cols=76 Identities=14% Similarity=0.335 Sum_probs=60.9
Q ss_pred CcEEEEcCCCCCCCHHH------HHhccCCC-CceEEEEeecC---CCCccEE--EEEeCCHHHHHHHHHh-CCceeeee
Q psy3727 78 RHTVHMRGLPFRANERD------VADFFRPV-VPVHVDIHYEN---GRPSGEA--DVDFATHEDAMQAMSK-DRTNMQHR 144 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~d------l~~~F~~~-~i~~v~i~~d~---g~~kG~a--fVeF~s~eda~~Al~~-~g~~i~gR 144 (232)
..-|||-+||..+..++ -.+||.+| +|..|.|-+.. ....+.+ ||+|.+.|||..||.. |+..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 36789999999888887 35789999 88888876543 2222334 9999999999999998 99999999
Q ss_pred EEEEEecCC
Q psy3727 145 YIELFLNSS 153 (232)
Q Consensus 145 ~I~V~~~~~ 153 (232)
-|+..+-.+
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 998876655
No 113
>KOG1548|consensus
Probab=96.93 E-value=0.0041 Score=56.03 Aligned_cols=76 Identities=21% Similarity=0.328 Sum_probs=57.2
Q ss_pred CcEEEEcCC--C--CCCCHHHH-------HhccCCCCceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeE
Q psy3727 78 RHTVHMRGL--P--FRANERDV-------ADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRY 145 (232)
Q Consensus 78 ~~~vfV~nL--p--~~~te~dl-------~~~F~~~~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~ 145 (232)
.++|.|+|| | +..+.+.| .+--+.|.+++-.+++++ .+.|.+.|.|.+.++|..||+. ++..++||.
T Consensus 265 ~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~-hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRq 343 (382)
T KOG1548|consen 265 DRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR-HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQ 343 (382)
T ss_pred CcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc-CCCceeEEEeCChHHHHHHHHHhcCeeecceE
Confidence 689999998 2 34453333 333456655554556664 6889999999999999999997 999999999
Q ss_pred EEEEecCCC
Q psy3727 146 IELFLNSSS 154 (232)
Q Consensus 146 I~V~~~~~~ 154 (232)
|.-++...+
T Consensus 344 l~A~i~DG~ 352 (382)
T KOG1548|consen 344 LTASIWDGK 352 (382)
T ss_pred EEEEEeCCc
Confidence 988776544
No 114
>KOG1456|consensus
Probab=96.89 E-value=0.0068 Score=55.25 Aligned_cols=108 Identities=17% Similarity=0.102 Sum_probs=75.1
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh---CCceeeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK---DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~---~g~~i~gR~I~V~~~~~ 153 (232)
.-+|+|++|--.++|.||.+-.+.| .|..|.++-. +--|.|||++.+.|++|+.. +...+.++.--+.+++.
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~----~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySts 106 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH----KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTS 106 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCceEEEEeccc----cceeeeeeccccchhhheehhccCcccccCchhhcccchh
Confidence 3899999999999999999999999 5656655432 33699999999999999985 55567777766665544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc-ceEEEcCCCccccHHHHHhhh
Q psy3727 154 SPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFERRNPNQ-AYVENTALSRSAVKDRAINVQ 216 (232)
Q Consensus 154 ~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~~~~~~~-~~v~~~gLp~~~t~~dl~~fF 216 (232)
..-.. .......++. ..+.+-|--|.+|.|=|.++.
T Consensus 107 q~i~R---------------------------~g~es~~pN~VLl~TIlNp~YpItvDVly~Ic 143 (494)
T KOG1456|consen 107 QCIER---------------------------PGDESATPNKVLLFTILNPQYPITVDVLYTIC 143 (494)
T ss_pred hhhcc---------------------------CCCCCCCCCeEEEEEeecCccccchhhhhhhc
Confidence 31110 0011223333 335666777888888887764
No 115
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.81 E-value=0.0021 Score=42.68 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=41.3
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHH
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAM 134 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al 134 (232)
.+|-|.+.+.+..+ +|..+|.+| +|+++.+. ..+-+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC----CCCcEEEEEECCHHHHHhhC
Confidence 57889999987664 455588899 99998876 23458999999999999996
No 116
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.58 E-value=0.0079 Score=45.30 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=50.3
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEE-Eeec-------C-CCCccEEEEEeCCHHHHHHHHHhCCceeeeeEE-
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVD-IHYE-------N-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYI- 146 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~-i~~d-------~-g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I- 146 (232)
+..|.|=+.|.. ....|.++|++| +|++.. +..+ . -....+-.|+|+++.+|++||.+|+..|.+..|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 478999999988 556788899999 777653 1111 1 123458999999999999999999999988654
Q ss_pred EEEec
Q psy3727 147 ELFLN 151 (232)
Q Consensus 147 ~V~~~ 151 (232)
-|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 45554
No 117
>KOG2314|consensus
Probab=96.47 E-value=0.0037 Score=59.49 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=56.6
Q ss_pred CcEEEEcCCCCCCC------HHHHHhccCCC-CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CCceeee-eEEE
Q psy3727 78 RHTVHMRGLPFRAN------ERDVADFFRPV-VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK-DRTNMQH-RYIE 147 (232)
Q Consensus 78 ~~~vfV~nLp~~~t------e~dl~~~F~~~-~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~-~g~~i~g-R~I~ 147 (232)
+.+|+|-|+|---. ..-|..+|+.+ +++.+.++.+. |..+|+.|+||++..+|+.|++. |++.|+- ++..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 57999999986321 22367788899 88999999888 88999999999999999999998 8877643 3444
Q ss_pred E
Q psy3727 148 L 148 (232)
Q Consensus 148 V 148 (232)
|
T Consensus 138 v 138 (698)
T KOG2314|consen 138 V 138 (698)
T ss_pred e
Confidence 4
No 118
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.40 E-value=0.01 Score=47.58 Aligned_cols=71 Identities=18% Similarity=0.150 Sum_probs=50.5
Q ss_pred CcEEEEcCCCCC-----CCH----HHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEE
Q psy3727 78 RHTVHMRGLPFR-----ANE----RDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIE 147 (232)
Q Consensus 78 ~~~vfV~nLp~~-----~te----~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~ 147 (232)
+.||.|.=+... .-. .+|.+.|++| +++=|++.-+ .-.|+|.+-+.|.+|+.+++..+.|+.|.
T Consensus 27 DaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~------~mwVTF~dg~sALaals~dg~~v~g~~l~ 100 (146)
T PF08952_consen 27 DATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD------TMWVTFRDGQSALAALSLDGIQVNGRTLK 100 (146)
T ss_dssp T-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT------CEEEEESSCHHHHHHHHGCCSEETTEEEE
T ss_pred CceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC------eEEEEECccHHHHHHHccCCcEECCEEEE
Confidence 477887755411 122 2677788888 7777776643 68999999999999999999999999999
Q ss_pred EEecCCC
Q psy3727 148 LFLNSSS 154 (232)
Q Consensus 148 V~~~~~~ 154 (232)
|.+.++.
T Consensus 101 i~LKtpd 107 (146)
T PF08952_consen 101 IRLKTPD 107 (146)
T ss_dssp EEE----
T ss_pred EEeCCcc
Confidence 9998774
No 119
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.32 E-value=0.022 Score=41.41 Aligned_cols=53 Identities=21% Similarity=0.329 Sum_probs=44.1
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCCCceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~ 136 (232)
+++.+|. .|-+-...||.++|++|.-+.|..+-|. -|||.....+.|+.|+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dT-----SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDT-----SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEECTT-----EEEEEECCCHHHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCC-----cEEEEeecHHHHHHHHHH
Confidence 6888888 9999999999999999988889888774 799999999999998885
No 120
>KOG2591|consensus
Probab=96.01 E-value=0.0092 Score=56.79 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=55.6
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCC--C-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh---CCceeeeeEEEE
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRP--V-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK---DRTNMQHRYIEL 148 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~--~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~---~g~~i~gR~I~V 148 (232)
.|.|.|+-||.++-+|+|+.+|+. | ++++|.+..+. -=||+|++.+||+.|.+. ..++|.|+.|.-
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 488999999999999999999985 6 88888887654 369999999999999983 667788887653
No 121
>KOG0120|consensus
Probab=95.56 E-value=0.035 Score=52.83 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=43.9
Q ss_pred CCC-CceEEEEeec-C----CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 100 RPV-VPVHVDIHYE-N----GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 100 ~~~-~i~~v~i~~d-~----g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
+.| .|..|.|..+ . .-..|-.||||++.++++.|++. +|..+.+|.|...+-..
T Consensus 431 ~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 431 AKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred cccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 456 6677888776 2 45678999999999999999997 99999999987665444
No 122
>KOG0115|consensus
Probab=95.48 E-value=0.012 Score=51.13 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=58.5
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh--CCc---eeeeeEEEEEec
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK--DRT---NMQHRYIELFLN 151 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~--~g~---~i~gR~I~V~~~ 151 (232)
..|+|.||+--++.+.|.+-|+.| .|....++.|. +++.+.++|+|+..-.|.+|+.. .+. ...++.+-|.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 679999999999999999999999 67666666666 99999999999999999999986 232 234455555443
No 123
>KOG2202|consensus
Probab=95.40 E-value=0.0047 Score=53.51 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=46.2
Q ss_pred HHHhccC-CC-CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCC
Q psy3727 94 DVADFFR-PV-VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSS 153 (232)
Q Consensus 94 dl~~~F~-~~-~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~ 153 (232)
||...|+ +| +|+.+.|..+- -...|-+||.|..+|+|++|++. |+..+.|++|...+...
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 3333444 45 66677665554 45688999999999999999998 99999999998777654
No 124
>KOG1855|consensus
Probab=95.35 E-value=0.016 Score=53.71 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=52.1
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeec---C----CCC--------ccEEEEEeCCHHHHHHHHHhC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYE---N----GRP--------SGEADVDFATHEDAMQAMSKD 137 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d---~----g~~--------kG~afVeF~s~eda~~Al~~~ 137 (232)
..+|.+-|||.+-.-+.|.++|+.+ .|..|+|++- . +.+ +=+|+|||+..+.|.+|.++.
T Consensus 231 srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 231 SRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3899999999999999999999999 8889999875 1 322 568999999999999999973
No 125
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=95.02 E-value=0.018 Score=39.27 Aligned_cols=21 Identities=19% Similarity=0.041 Sum_probs=17.1
Q ss_pred EEEcCCCccccHHHHHhhhCC
Q psy3727 198 VENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 198 v~~~gLp~~~t~~dl~~fF~~ 218 (232)
|+|+|||+++|++||+++|..
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~ 21 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSR 21 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTT
T ss_pred CEEeCCCCCCCHHHHHHHHHh
Confidence 678999999999999999964
No 126
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=93.97 E-value=0.04 Score=37.01 Aligned_cols=21 Identities=5% Similarity=-0.069 Sum_probs=19.3
Q ss_pred EEEcCCCccccHHHHHhhhCC
Q psy3727 198 VENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 198 v~~~gLp~~~t~~dl~~fF~~ 218 (232)
|+|.|||+++|+++|+++|..
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~ 21 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQ 21 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHT
T ss_pred cEEcCCCCcCCHHHHHHHHHH
Confidence 678999999999999999974
No 127
>KOG4676|consensus
Probab=93.87 E-value=0.082 Score=48.59 Aligned_cols=73 Identities=11% Similarity=0.050 Sum_probs=57.4
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC-----CCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEec
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN-----GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLN 151 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~-----g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~ 151 (232)
..|.|.||..++|.++++.+|..+ +|..+.|+-.. --..=.|||.|.+...+..|-.+..+++=++.|.|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 589999999999999999999998 88877776422 22344899999999999999988555655666555444
No 128
>KOG3152|consensus
Probab=93.47 E-value=0.032 Score=48.52 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=55.4
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC-C---------C----CccEEEEEeCCHHHHHHHHHh-CCceee
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN-G---------R----PSGEADVDFATHEDAMQAMSK-DRTNMQ 142 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~-g---------~----~kG~afVeF~s~eda~~Al~~-~g~~i~ 142 (232)
.+||+++||......-|+++|+.| .|-+|.|..+. - . .--++.|||.+...|+.+.+. |++.|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 789999999999999999999999 77788876433 1 1 222678999999999998887 999888
Q ss_pred eeE
Q psy3727 143 HRY 145 (232)
Q Consensus 143 gR~ 145 (232)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 864
No 129
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.19 E-value=0.27 Score=40.63 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=42.7
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCC-C-Cc---eEEEEeecC----CCCccEEEEEeCCHHHHHHHHHh-CCceeee
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRP-V-VP---VHVDIHYEN----GRPSGEADVDFATHEDAMQAMSK-DRTNMQH 143 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~-~-~i---~~v~i~~d~----g~~kG~afVeF~s~eda~~Al~~-~g~~i~g 143 (232)
...|-||+||.+.||+++.+.+++ + .. ..+.-.... -...--|||.|.+.+++..-+.. +++.+-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 478999999999999999998877 4 22 233322222 12345799999999998888887 8766543
No 130
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.06 E-value=1 Score=34.44 Aligned_cols=65 Identities=12% Similarity=0.075 Sum_probs=51.1
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC--CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeee
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV--VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQH 143 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~--~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~g 143 (232)
..+-+-..|+-++.++|..|.+.+ .|..++|++|...++=.+.++|.+.++|.+-.+. ||+.++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 556666778888888888777777 6678889888744556889999999999999988 8876643
No 131
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=92.89 E-value=0.086 Score=42.07 Aligned_cols=24 Identities=8% Similarity=-0.143 Sum_probs=21.4
Q ss_pred cceEEEcCCCccccHHHHHhhhCC
Q psy3727 195 QAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 195 ~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
...|+|.|||+++|++||+++|..
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~ 57 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAH 57 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhc
Confidence 357999999999999999999963
No 132
>KOG2193|consensus
Probab=92.39 E-value=0.13 Score=47.91 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=56.8
Q ss_pred EEEEcCCCCCCCHHHHHhccCCCCc-eEEEEeecCCCCccEEEEEeCCHHHHHHHHHh--CCceeeeeEEEEEecCCC
Q psy3727 80 TVHMRGLPFRANERDVADFFRPVVP-VHVDIHYENGRPSGEADVDFATHEDAMQAMSK--DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 80 ~vfV~nLp~~~te~dl~~~F~~~~i-~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~--~g~~i~gR~I~V~~~~~~ 154 (232)
.+++.||...++..||..+|....+ ..-.++. ..|++||...+...|.+|++. .+.++.|..++|..+-++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 5899999999999999999998732 2212221 358999999999999999997 456789999999877654
No 133
>KOG4285|consensus
Probab=92.20 E-value=0.49 Score=42.26 Aligned_cols=72 Identities=19% Similarity=0.191 Sum_probs=56.1
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCceeeeeE-EEEEecCCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRY-IELFLNSSS 154 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~-I~V~~~~~~ 154 (232)
+..|-|=++|...+ .-|..+|+.| +|++.... .+| .+-+|.|.+..+|++||.+|++.|++-. |-|..+..+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-~ng---NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-SNG---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC-CCC---ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence 57888888887644 4567789999 88776554 223 4899999999999999999999999864 667776554
No 134
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=92.17 E-value=0.15 Score=39.31 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=37.7
Q ss_pred cEEEEcCCCCCC---------CHHHHHhccCCCCceEEEEeecCCCCccEEEEEeC-CHHHHHHHHHh
Q psy3727 79 HTVHMRGLPFRA---------NERDVADFFRPVVPVHVDIHYENGRPSGEADVDFA-THEDAMQAMSK 136 (232)
Q Consensus 79 ~~vfV~nLp~~~---------te~dl~~~F~~~~i~~v~i~~d~g~~kG~afVeF~-s~eda~~Al~~ 136 (232)
.++.|-|+|.+. +.++|++.|+.|.+.+|+.+.+..-++|++.|+|. |-.-...|+..
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHH
Confidence 578888887654 56789999999988888888887567899999998 56666777765
No 135
>KOG1996|consensus
Probab=92.16 E-value=0.32 Score=43.31 Aligned_cols=58 Identities=16% Similarity=0.136 Sum_probs=43.9
Q ss_pred HHHHhccCCC-CceEEEEeecCCCC---ccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEe
Q psy3727 93 RDVADFFRPV-VPVHVDIHYENGRP---SGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFL 150 (232)
Q Consensus 93 ~dl~~~F~~~-~i~~v~i~~d~g~~---kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~ 150 (232)
+++++-.++| +|..|.|....+.+ ----||+|+..++|.+|+-. |+.+++||.+.-.+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 4566666778 78888776655332 23468999999999999987 99999999886543
No 136
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.70 E-value=1.4 Score=30.60 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=43.3
Q ss_pred CCCHHHHHhccCCCCceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEE
Q psy3727 89 RANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIEL 148 (232)
Q Consensus 89 ~~te~dl~~~F~~~~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V 148 (232)
.++-+||+.-+..|.-.+|.... +| =||.|.+.+||++|... |++.+-...|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDRIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcceEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46788999999999777776532 34 48999999999999998 888887766654
No 137
>KOG0112|consensus
Probab=90.52 E-value=0.11 Score=52.14 Aligned_cols=59 Identities=19% Similarity=0.144 Sum_probs=50.1
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK 136 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~ 136 (232)
..+||++||+..+++.+|+..|..+ .+.+|.|..-. +.-.-++||.|.+...+-.|+..
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e 432 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFE 432 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchh
Confidence 5799999999999999999999999 78889888776 66666999999987777666654
No 138
>KOG0112|consensus
Probab=90.47 E-value=0.35 Score=48.73 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=62.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHhccCCCCceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeee--eEEEEE
Q psy3727 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQH--RYIELF 149 (232)
Q Consensus 73 ~~~~s~~~vfV~nLp~~~te~dl~~~F~~~~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~g--R~I~V~ 149 (232)
.+.+. ..++|++|+..+....|...|..|..+++ |.++.|.+ ||+|.+++...++.|+.- -+..|++ +.|.|.
T Consensus 451 kst~t-tr~~sgglg~w~p~~~l~r~fd~fGpir~-Idy~hgq~--yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 451 KSTPT-TRLQSGGLGPWSPVSRLNREFDRFGPIRI-IDYRHGQP--YAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred ccccc-eeeccCCCCCCChHHHHHHHhhccCccee-eecccCCc--ceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 33444 88999999999999999999999955554 55555665 999999999999999985 6666654 568888
Q ss_pred ecCCC
Q psy3727 150 LNSSS 154 (232)
Q Consensus 150 ~~~~~ 154 (232)
++...
T Consensus 527 la~~~ 531 (975)
T KOG0112|consen 527 LASPP 531 (975)
T ss_pred cccCC
Confidence 88764
No 139
>KOG2135|consensus
Probab=90.46 E-value=0.14 Score=48.21 Aligned_cols=72 Identities=24% Similarity=0.383 Sum_probs=60.2
Q ss_pred cEEEEcCCCCCC-CHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEecCCC
Q psy3727 79 HTVHMRGLPFRA-NERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 79 ~~vfV~nLp~~~-te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~~~~ 154 (232)
+.|-+.-.|+.. |.++|..+|.+| +|+.|.+.+. .=-|.|+|.+..+|-.|..-++..|++|.|+|++..+.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~----~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS----SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc----hhhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 567777667654 567899999999 8988888665 23599999999999888878999999999999998875
No 140
>KOG0114|consensus
Probab=90.35 E-value=0.23 Score=37.76 Aligned_cols=22 Identities=5% Similarity=-0.091 Sum_probs=20.4
Q ss_pred ceEEEcCCCccccHHHHHhhhC
Q psy3727 196 AYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 196 ~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
..|+++||||++|.||..++|.
T Consensus 19 riLyirNLp~~ITseemydlFG 40 (124)
T KOG0114|consen 19 RILYIRNLPFKITSEEMYDLFG 40 (124)
T ss_pred eeEEEecCCccccHHHHHHHhh
Confidence 4689999999999999999996
No 141
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=89.12 E-value=0.32 Score=31.97 Aligned_cols=21 Identities=5% Similarity=-0.099 Sum_probs=19.4
Q ss_pred EEEcCCCccccHHHHHhhhCC
Q psy3727 198 VENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 198 v~~~gLp~~~t~~dl~~fF~~ 218 (232)
|.+.|||+.+++++|+++|+.
T Consensus 2 i~i~~l~~~~~~~~i~~~~~~ 22 (74)
T cd00590 2 LFVGNLPPDVTEEDLRELFSK 22 (74)
T ss_pred EEEeCCCCccCHHHHHHHHHh
Confidence 678999999999999999975
No 142
>smart00362 RRM_2 RNA recognition motif.
Probab=88.78 E-value=0.35 Score=31.59 Aligned_cols=21 Identities=5% Similarity=-0.094 Sum_probs=19.2
Q ss_pred EEEcCCCccccHHHHHhhhCC
Q psy3727 198 VENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 198 v~~~gLp~~~t~~dl~~fF~~ 218 (232)
|++.|||+.++++||+++|..
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~ 22 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSK 22 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHh
Confidence 678999999999999999963
No 143
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.59 E-value=1.1 Score=37.46 Aligned_cols=60 Identities=17% Similarity=0.272 Sum_probs=42.7
Q ss_pred CHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-C--CceeeeeEEEEEecCCC
Q psy3727 91 NERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-D--RTNMQHRYIELFLNSSS 154 (232)
Q Consensus 91 te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~--g~~i~gR~I~V~~~~~~ 154 (232)
..+.|+++|..+ .++.+.+.. +-.=..|.|.+.++|.+|... + +..+.+..|+|+++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999 666655543 334589999999999999998 7 88999999999988554
No 144
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.22 E-value=1 Score=31.54 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=34.0
Q ss_pred CCCCCHHHHHhccCCC------CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEec
Q psy3727 87 PFRANERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLN 151 (232)
Q Consensus 87 p~~~te~dl~~~F~~~------~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~ 151 (232)
--.++..+|..++... .|-.|.|..+ |+||+-.. +.|+.+++. ++..+.|++|.|..|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3457888999998754 3447777544 89999886 477888887 999999999999864
No 145
>KOG2416|consensus
Probab=87.85 E-value=0.37 Score=46.60 Aligned_cols=72 Identities=7% Similarity=0.066 Sum_probs=53.4
Q ss_pred CcEEEEcCCCCCCCHHHHHhccC-CC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCcee---eeeEEEEEec
Q psy3727 78 RHTVHMRGLPFRANERDVADFFR-PV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNM---QHRYIELFLN 151 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~-~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i---~gR~I~V~~~ 151 (232)
.++|+|.||---.|.-+|++++. .+ .|+..+| | +.|-.|||.|.+.++|.+.+.. |+..+ +.+.|.+.+.
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D--kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D--KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHHHH--H--HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 49999999977779999999998 56 5556544 3 3456799999999999988875 55433 4455666555
Q ss_pred CC
Q psy3727 152 SS 153 (232)
Q Consensus 152 ~~ 153 (232)
+.
T Consensus 520 ~~ 521 (718)
T KOG2416|consen 520 RA 521 (718)
T ss_pred ch
Confidence 44
No 146
>KOG2068|consensus
Probab=87.17 E-value=0.3 Score=44.03 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=57.6
Q ss_pred cEEEEcCCCCCCCHHHHH---hccCCC-CceEEEEeecC-----CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEE
Q psy3727 79 HTVHMRGLPFRANERDVA---DFFRPV-VPVHVDIHYEN-----GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIEL 148 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~---~~F~~~-~i~~v~i~~d~-----g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V 148 (232)
.-|||-+|+.....+++. ++|.+| .|..|.+-.+. -...--++|+|+..|||..||.. ++..++++.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 678888898877666543 577788 78888776643 01122389999999999999998 999999998777
Q ss_pred EecCCC
Q psy3727 149 FLNSSS 154 (232)
Q Consensus 149 ~~~~~~ 154 (232)
.+..++
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776664
No 147
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=84.52 E-value=0.74 Score=38.09 Aligned_cols=24 Identities=4% Similarity=-0.119 Sum_probs=21.8
Q ss_pred cceEEEcCCCccccHHHHHhhhCC
Q psy3727 195 QAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 195 ~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
...|+|.|||+++|+++|.++|..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~ 138 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKK 138 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHh
Confidence 468999999999999999999974
No 148
>KOG0121|consensus
Probab=83.74 E-value=0.68 Score=36.58 Aligned_cols=24 Identities=13% Similarity=-0.043 Sum_probs=21.7
Q ss_pred cceEEEcCCCccccHHHHHhhhCC
Q psy3727 195 QAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 195 ~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
.++|.|.||+|.+|+|.|-++|..
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~ 59 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSK 59 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHh
Confidence 358999999999999999999974
No 149
>KOG4660|consensus
Probab=83.23 E-value=1.4 Score=42.20 Aligned_cols=47 Identities=6% Similarity=0.085 Sum_probs=32.6
Q ss_pred EEEeecC--CCCccEEEEEeCCHHHHHHHHHh-CCce---eee-eEEEEEecCC
Q psy3727 107 VDIHYEN--GRPSGEADVDFATHEDAMQAMSK-DRTN---MQH-RYIELFLNSS 153 (232)
Q Consensus 107 v~i~~d~--g~~kG~afVeF~s~eda~~Al~~-~g~~---i~g-R~I~V~~~~~ 153 (232)
+.++.|- ....|||||-|.+++++..+.+. |++. ++. +..+|.+|..
T Consensus 419 lYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArI 472 (549)
T KOG4660|consen 419 LYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARI 472 (549)
T ss_pred EEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhh
Confidence 4555554 66899999999999999999987 6653 333 2344544443
No 150
>smart00360 RRM RNA recognition motif.
Probab=81.52 E-value=0.84 Score=29.49 Aligned_cols=18 Identities=6% Similarity=-0.012 Sum_probs=16.4
Q ss_pred EcCCCccccHHHHHhhhC
Q psy3727 200 NTALSRSAVKDRAINVQL 217 (232)
Q Consensus 200 ~~gLp~~~t~~dl~~fF~ 217 (232)
|.|||+.++++||+++|+
T Consensus 1 i~~l~~~~~~~~l~~~f~ 18 (71)
T smart00360 1 VGNLPPDVTEEELRELFS 18 (71)
T ss_pred CCCCCcccCHHHHHHHHH
Confidence 468999999999999996
No 151
>KOG0804|consensus
Probab=81.07 E-value=3.5 Score=38.80 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=56.3
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC--CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeee
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV--VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQH 143 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~--~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~g 143 (232)
...|.|=-+|-.+|-.||..|...+ .|.+|+|++|.--.+=...|.|.+.+||..-.+. |++.++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 5889999999999999999999987 7889999998633344789999999999999987 8876653
No 152
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=80.91 E-value=1.7 Score=31.92 Aligned_cols=74 Identities=8% Similarity=0.056 Sum_probs=48.8
Q ss_pred EEEEeCCHHHHHHHHHh--CCceeeeeEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCcc
Q psy3727 120 ADVDFATHEDAMQAMSK--DRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFE-RRNPNQA 196 (232)
Q Consensus 120 afVeF~s~eda~~Al~~--~g~~i~gR~I~V~~~~~~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~-~~~~~~~ 196 (232)
|.|+|++++-|++-+++ +.-.++...+.|..+.-..... ..++ .-..+..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~---------------------------~k~qv~~~vs~r 53 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHL---------------------------QKFQVFSGVSKR 53 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCc---------------------------eEEEEEEcccCC
Confidence 68999999999999997 5556777777776543321010 0010 1112234
Q ss_pred eEEEcCCCccccHHHHHhhhCCCC
Q psy3727 197 YVENTALSRSAVKDRAINVQLCPY 220 (232)
Q Consensus 197 ~v~~~gLp~~~t~~dl~~fF~~~~ 220 (232)
.|-+.|||-...+++|++..+.-|
T Consensus 54 tVlvsgip~~l~ee~l~D~LeIhF 77 (88)
T PF07292_consen 54 TVLVSGIPDVLDEEELRDKLEIHF 77 (88)
T ss_pred EEEEeCCCCCCChhhheeeEEEEE
Confidence 688999999999999988755433
No 153
>KOG0533|consensus
Probab=79.20 E-value=1.6 Score=37.98 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=26.6
Q ss_pred ceEEEcCCCccccHHHHHhhhCC---------CCCCCCCCC
Q psy3727 196 AYVENTALSRSAVKDRAINVQLC---------PYHRHSRPK 227 (232)
Q Consensus 196 ~~v~~~gLp~~~t~~dl~~fF~~---------~~~~~~~~~ 227 (232)
..|.|.|||+.++.+||+++|.. .|+.++++.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~ 124 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSL 124 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCC
Confidence 56899999999999999999974 277777664
No 154
>KOG0126|consensus
Probab=75.17 E-value=0.64 Score=38.79 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=22.0
Q ss_pred CcceEEEcCCCccccHHHHHhhhC
Q psy3727 194 NQAYVENTALSRSAVKDRAINVQL 217 (232)
Q Consensus 194 ~~~~v~~~gLp~~~t~~dl~~fF~ 217 (232)
+.+||+|.||||..|+.||..+|.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFS 57 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFS 57 (219)
T ss_pred cceEEEECCCcccccCCcEEEEee
Confidence 457999999999999999999996
No 155
>KOG4483|consensus
Probab=75.10 E-value=6.3 Score=36.74 Aligned_cols=62 Identities=15% Similarity=0.196 Sum_probs=50.4
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC--CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCceeeee
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV--VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHR 144 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~--~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~~g~~i~gR 144 (232)
.|+|-|-++|.....+||...|+.| .-.+|.++-|. .|+-.|.+...|..||.....++.=|
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~kh~~lKiR 454 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTLKHDWLKIR 454 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhccCceEEee
Confidence 4899999999999999999999998 34467777664 69999999999999998843444333
No 156
>KOG0122|consensus
Probab=70.27 E-value=4.2 Score=35.44 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=24.1
Q ss_pred CcceEEEcCCCccccHHHHHhhhCCCCCCCC
Q psy3727 194 NQAYVENTALSRSAVKDRAINVQLCPYHRHS 224 (232)
Q Consensus 194 ~~~~v~~~gLp~~~t~~dl~~fF~~~~~~~~ 224 (232)
+...|.|.|||-+++++||+++| -+|-.+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf-~~fg~i~ 217 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELF-RPFGPIT 217 (270)
T ss_pred ccceeEEecCccccChhHHHHHh-hccCccc
Confidence 45789999999999999999999 4444333
No 157
>KOG2253|consensus
Probab=69.44 E-value=2.2 Score=41.79 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=54.0
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCCCce-EEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEec
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPVVPV-HVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLN 151 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~~i~-~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~ 151 (232)
..+|||+|+.+.+..+=++.....|..+ .+..+. |+|.+|..++-...|+.. +...+++..+.+...
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 3899999999999999999998888433 333222 999999999999999997 777888887766654
No 158
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=67.97 E-value=21 Score=25.90 Aligned_cols=60 Identities=12% Similarity=0.177 Sum_probs=42.7
Q ss_pred CHHHHHhccCCC---CceEEEEeecC-----CCCccEE----EEEeCCHHHHHHHHHhCCceeeeeEEEEEe
Q psy3727 91 NERDVADFFRPV---VPVHVDIHYEN-----GRPSGEA----DVDFATHEDAMQAMSKDRTNMQHRYIELFL 150 (232)
Q Consensus 91 te~dl~~~F~~~---~i~~v~i~~d~-----g~~kG~a----fVeF~s~eda~~Al~~~g~~i~gR~I~V~~ 150 (232)
+.++|.+|.+.. +++.|.+.-+- ...+-|+ .|.|-+.++.+..|+.+...|..-.|+...
T Consensus 2 ~a~eII~~I~~skKkTPVKvYv~G~l~~~~~~~~~~fg~~~~~vvfGd~~~i~~~Le~~~~~I~~y~iE~dr 73 (83)
T PF08503_consen 2 DAEEIIRYIKNSKKKTPVKVYVKGDLAGIDFEDVKVFGSGNFGVVFGDWDEIKPFLEANKDKIEDYRIENDR 73 (83)
T ss_dssp HHHHHHHHHHHCTTB-EEEEEEEESCTC---TTSEEEEESSEEEEEEEHHHHHHHHHHTTTTEEEEEEEE-G
T ss_pred CHHHHHHHHHhCCCCCCEEEEEeeeecCCChhheEEEeCCCcEEEEecHHHHHHHHHhchhhCcEEEEEecC
Confidence 456788888754 56666665441 2333344 489999999999999999999999888754
No 159
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=65.77 E-value=36 Score=33.63 Aligned_cols=68 Identities=7% Similarity=0.113 Sum_probs=48.1
Q ss_pred EEEEc-CCCCCCCHHHHHhccCCC-C-----ceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEec
Q psy3727 80 TVHMR-GLPFRANERDVADFFRPV-V-----PVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLN 151 (232)
Q Consensus 80 ~vfV~-nLp~~~te~dl~~~F~~~-~-----i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~ 151 (232)
++||. +=-..++..+|..+...- . |-.|.|.-+ |.||+... +.+...++. ++..+.++.|.|..+
T Consensus 488 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (629)
T PRK11634 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS------HSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLL 560 (629)
T ss_pred EEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC------ceEEEcCh-hhHHHHHHHhccccccCCceEEEEC
Confidence 34443 346678999999998754 3 335666543 89999874 446666765 888899999999987
Q ss_pred CCC
Q psy3727 152 SSS 154 (232)
Q Consensus 152 ~~~ 154 (232)
...
T Consensus 561 ~~~ 563 (629)
T PRK11634 561 GDA 563 (629)
T ss_pred CCC
Confidence 543
No 160
>KOG2318|consensus
Probab=65.40 E-value=15 Score=35.80 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=54.9
Q ss_pred CcEEEEcCCCCC-CCHHHHHhccCCC-----CceEEEEeecC-CC----------C------------------------
Q psy3727 78 RHTVHMRGLPFR-ANERDVADFFRPV-----VPVHVDIHYEN-GR----------P------------------------ 116 (232)
Q Consensus 78 ~~~vfV~nLp~~-~te~dl~~~F~~~-----~i~~v~i~~d~-g~----------~------------------------ 116 (232)
.+.|-|-||-|+ +..+||.-+|+.| .|..|.|.... |+ +
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~ 253 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDV 253 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhH
Confidence 489999999996 7888999999876 46677775433 22 1
Q ss_pred --------------ccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEe
Q psy3727 117 --------------SGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFL 150 (232)
Q Consensus 117 --------------kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~ 150 (232)
-=||.|+|.+.++|.+..+. +|.++..--..+.+
T Consensus 254 ~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 254 DREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred HHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 12899999999999999986 88887665444433
No 161
>KOG0130|consensus
Probab=64.97 E-value=7.6 Score=31.04 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=24.2
Q ss_pred CCCCCcceEEEcCCCccccHHHHHhhhCCCC
Q psy3727 190 RRNPNQAYVENTALSRSAVKDRAINVQLCPY 220 (232)
Q Consensus 190 ~~~~~~~~v~~~gLp~~~t~~dl~~fF~~~~ 220 (232)
+++-....|+|.++...+|++||.+.| |+|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F-~dy 96 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKF-ADY 96 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHH-hhc
Confidence 444445679999999999999999999 544
No 162
>KOG0116|consensus
Probab=61.91 E-value=5.6 Score=37.37 Aligned_cols=22 Identities=14% Similarity=-0.118 Sum_probs=20.2
Q ss_pred eEEEcCCCccccHHHHHhhhCC
Q psy3727 197 YVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 197 ~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
.|+|.|||+++|+++|.++|..
T Consensus 290 ~i~V~nlP~da~~~~l~~~Fk~ 311 (419)
T KOG0116|consen 290 GIFVKNLPPDATPAELEEVFKQ 311 (419)
T ss_pred ceEeecCCCCCCHHHHHHHHhh
Confidence 3899999999999999999975
No 163
>KOG4676|consensus
Probab=61.05 E-value=3.1 Score=38.53 Aligned_cols=118 Identities=13% Similarity=-0.034 Sum_probs=64.3
Q ss_pred CcEEEEcCCCCCCC-HHHHHhccCCCCceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEecCCCC
Q psy3727 78 RHTVHMRGLPFRAN-ERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSP 155 (232)
Q Consensus 78 ~~~vfV~nLp~~~t-e~dl~~~F~~~~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~~~~~ 155 (232)
..++||++|...++ -.++..+|-...-+-|.+++-. -.+.=||||+|++...+..+|.-++..+..+.+...-..+..
T Consensus 52 sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~a 131 (479)
T KOG4676|consen 52 SRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNA 131 (479)
T ss_pred eeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccc
Confidence 58999999966544 3333333333222233334433 455567999999888777777667766666655322111110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC-CcceEEEcCCCccccHHHHHhhhCC
Q psy3727 156 RGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPFE--RRNP-NQAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 156 ~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~~--~~~~-~~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
- -.++...++. ..-. ..-.+.+.+|+-.+...++.+.|+.
T Consensus 132 --i---------------------lktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r 174 (479)
T KOG4676|consen 132 --I---------------------LKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFER 174 (479)
T ss_pred --e---------------------ecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhh
Confidence 0 0001111110 0000 0123677789999999999999975
No 164
>KOG4410|consensus
Probab=57.90 E-value=32 Score=30.84 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=36.1
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC--CceEEEEeecCCCCccEEEEEeCCH
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV--VPVHVDIHYENGRPSGEADVDFATH 127 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~--~i~~v~i~~d~g~~kG~afVeF~s~ 127 (232)
.-|+|.|||-++.-.||+.-+.+. .+.+|.+. -+.|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee----cCCcceeEecCCc
Confidence 569999999999999999998865 66676664 3556799999764
No 165
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=56.52 E-value=3.8 Score=32.03 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=44.2
Q ss_pred CCCHHHHHhccCCC-Cce-EEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEecCCC
Q psy3727 89 RANERDVADFFRPV-VPV-HVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 89 ~~te~dl~~~F~~~-~i~-~v~i~~d~g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~~~~ 154 (232)
..+.+.|.+.+... .+. .+.+.. -..++..+.|.+++|++++++.....+++..|.|...++.
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~---l~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRD---LGDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPD 92 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEE---eCCCeEEEEEEeccceeEEEecccccccccchhhhhhccc
Confidence 45666777777654 322 333322 1346899999999999999998777888888888776643
No 166
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=54.49 E-value=43 Score=21.77 Aligned_cols=55 Identities=16% Similarity=0.287 Sum_probs=42.9
Q ss_pred EEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCH----HHHHHHHHhCC
Q psy3727 80 TVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATH----EDAMQAMSKDR 138 (232)
Q Consensus 80 ~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~----eda~~Al~~~g 138 (232)
|+.|.||.-.--...|++.+... .|..+.+... ++.+.|+|... +++.++|++-+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~----~~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE----TKTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT----TTEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC----CCEEEEEEecCCCCHHHHHHHHHHhC
Confidence 57788888888888999999998 8888888654 46799999844 67777777633
No 167
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=52.96 E-value=38 Score=27.35 Aligned_cols=53 Identities=21% Similarity=0.106 Sum_probs=37.6
Q ss_pred cEEEEcCCCCC----CCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh
Q psy3727 79 HTVHMRGLPFR----ANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136 (232)
Q Consensus 79 ~~vfV~nLp~~----~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~ 136 (232)
.||.|+=|.-+ -+-+.|....+.| .|..|++.- +--|.|.|.+..+|=+|+..
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-----rqsavVvF~d~~SAC~Av~A 144 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-----RQSAVVVFKDITSACKAVSA 144 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-----CceEEEEehhhHHHHHHHHh
Confidence 67888755444 3334455666677 677887753 23799999999999999986
No 168
>KOG1295|consensus
Probab=51.97 E-value=19 Score=33.28 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=44.5
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC--CceEEEEeecC----CCCccEEEEEeCCHHHHHHHHHh-CCc
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV--VPVHVDIHYEN----GRPSGEADVDFATHEDAMQAMSK-DRT 139 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~--~i~~v~i~~d~----g~~kG~afVeF~s~eda~~Al~~-~g~ 139 (232)
..|.|+.||...|+++|.+-..++ .+....+.... ...-+.|||.|..+++...-... +++
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ 75 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGY 75 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCce
Confidence 678899999999999999988887 44444444222 23467899999999996655554 554
No 169
>KOG1995|consensus
Probab=49.03 E-value=42 Score=30.79 Aligned_cols=25 Identities=8% Similarity=-0.008 Sum_probs=21.8
Q ss_pred CcceEEEcCCCccccHHHHHhhhCC
Q psy3727 194 NQAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 194 ~~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
....|+|.+||.++|+++|.+||..
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~q 89 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQ 89 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhh
Confidence 3467889999999999999999973
No 170
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=48.69 E-value=23 Score=25.73 Aligned_cols=49 Identities=22% Similarity=0.222 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHhccCCC---CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh
Q psy3727 86 LPFRANERDVADFFRPV---VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK 136 (232)
Q Consensus 86 Lp~~~te~dl~~~F~~~---~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~ 136 (232)
+..+++..+|++.++.+ .|..|....-. +.. -|||.+..-.+|.....+
T Consensus 28 V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~K--KA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 28 VDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEK--KAYVKLAEEYDAEEIASR 80 (84)
T ss_pred ECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcE--EEEEEeCCCCcHHHHHHh
Confidence 57789999999999974 66677766554 322 599999988888776543
No 171
>KOG4574|consensus
Probab=48.64 E-value=9.6 Score=38.71 Aligned_cols=74 Identities=11% Similarity=0.072 Sum_probs=61.1
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCce--eeeeEEEEEecCC
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DRTN--MQHRYIELFLNSS 153 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~-~g~~--i~gR~I~V~~~~~ 153 (232)
.++..+.|++...|-.-|..+|++| .+..++...+- -.|.|+|.+.|.|..|++. ++++ +-|-+.+|.+++.
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3567777888899999999999999 88898887653 3699999999999999996 6654 4566788999888
Q ss_pred CC
Q psy3727 154 SP 155 (232)
Q Consensus 154 ~~ 155 (232)
.+
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 76
No 172
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=48.29 E-value=19 Score=31.90 Aligned_cols=33 Identities=15% Similarity=0.050 Sum_probs=23.4
Q ss_pred EEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecCCC
Q psy3727 120 ADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 120 afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~~~ 154 (232)
|||+|+++++|+.|++. .... .+.+.|..|.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 79999999999999995 2222 134566666555
No 173
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.85 E-value=88 Score=20.65 Aligned_cols=51 Identities=10% Similarity=0.069 Sum_probs=31.0
Q ss_pred CHHHHHhccCCC--CceEEEEeecCCCCccEEEEEeC--CHHHHHHHHHhCCcee
Q psy3727 91 NERDVADFFRPV--VPVHVDIHYENGRPSGEADVDFA--THEDAMQAMSKDRTNM 141 (232)
Q Consensus 91 te~dl~~~F~~~--~i~~v~i~~d~g~~kG~afVeF~--s~eda~~Al~~~g~~i 141 (232)
.-.+|.++|.++ +|..+.............+|.++ +.+++.++|+..+-.+
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~G~~v 68 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRAGYEV 68 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHCCCee
Confidence 456788888877 66666544332223334455554 6778888888766443
No 174
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=42.53 E-value=37 Score=24.19 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=36.3
Q ss_pred EcCCCCCCCHHHHHhccCCC---CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHH
Q psy3727 83 MRGLPFRANERDVADFFRPV---VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMS 135 (232)
Q Consensus 83 V~nLp~~~te~dl~~~F~~~---~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~ 135 (232)
+=.++.++|..+|+..++.+ +|..|....-. +.. -|||.+..-++|...-.
T Consensus 18 ~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~K--KA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEK--KAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCce--EEEEEECCCCcHHHHHH
Confidence 33467899999999999875 56677665544 322 49999988777766543
No 175
>KOG0125|consensus
Probab=40.59 E-value=22 Score=32.45 Aligned_cols=23 Identities=0% Similarity=-0.236 Sum_probs=21.3
Q ss_pred ceEEEcCCCccccHHHHHhhhCC
Q psy3727 196 AYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 196 ~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
..|+|.|+||..-+.||+..|+.
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~k 119 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEK 119 (376)
T ss_pred ceeEeecCCccccCccHHHHHHh
Confidence 57999999999999999999974
No 176
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=39.79 E-value=1.1e+02 Score=20.16 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=33.3
Q ss_pred CHHHHHhccCCC--CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCce
Q psy3727 91 NERDVADFFRPV--VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTN 140 (232)
Q Consensus 91 te~dl~~~F~~~--~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~~g~~ 140 (232)
.-.+|-+.|.+. .|..+.+..... ++.--+.+++.+.|.++|+.++..
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~~~~~~~~~L~~~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE--FGILRLIVSDPDKAKEALKEAGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEECCHHHHHHHHHHCCCE
Confidence 445788888765 677776533323 577777788888899998876644
No 177
>PRK11901 hypothetical protein; Reviewed
Probab=39.68 E-value=69 Score=29.13 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=38.7
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCCCceEEEEeecC--CCCccEEEE--EeCCHHHHHHHHHh
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN--GRPSGEADV--DFATHEDAMQAMSK 136 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~~i~~v~i~~d~--g~~kG~afV--eF~s~eda~~Al~~ 136 (232)
.++|-|-.+ .++++|.+|..++.+..+++.... |+ ..|..| .|.+.++|+.|++.
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~s 303 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQNLSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIAT 303 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcCcCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHh
Confidence 578887765 358889998887765556655544 33 344443 58899999999986
No 178
>COG3012 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.89 E-value=42 Score=26.94 Aligned_cols=66 Identities=9% Similarity=0.008 Sum_probs=44.5
Q ss_pred CCCHHHHHhccCCCCceEEEEeecC-CCCccEEEEEeC---CHHHHHHHHHh--CCceeeeeEEEEEecCCC
Q psy3727 89 RANERDVADFFRPVVPVHVDIHYEN-GRPSGEADVDFA---THEDAMQAMSK--DRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 89 ~~te~dl~~~F~~~~i~~v~i~~d~-g~~kG~afVeF~---s~eda~~Al~~--~g~~i~gR~I~V~~~~~~ 154 (232)
...+++|.+.|..-+-..++|+... +..+-.+||+|. +.++-..|+.. --..+++|+.-|+...++
T Consensus 60 ~~~~~~l~~~~~~t~wlGL~I~~h~~~~~~~~~~VeF~A~f~~~~~~~a~~ErSrFvk~ngrWyyiDgtv~~ 131 (151)
T COG3012 60 ALDRAELIAGFAHTEWLGLTIIEHTGLGAPNHGFVEFVARFKGGGKTGAHHERSRFVKINGRWYYIDGTVPP 131 (151)
T ss_pred ccchhHhhcccccceEeeEEEEEeccCCCCcceeEEEEEEEccCCccchhhhhhhheEECCEEEEECCCCCc
Confidence 3556677777776655677777766 444778999986 34444555554 345688999888777663
No 179
>KOG0226|consensus
Probab=37.16 E-value=29 Score=30.54 Aligned_cols=110 Identities=11% Similarity=0.058 Sum_probs=73.4
Q ss_pred cEEEEcCCCCCCCHHH-H--HhccCCC-CceEEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CCceeeeeEEEEEecC
Q psy3727 79 HTVHMRGLPFRANERD-V--ADFFRPV-VPVHVDIHYEN-GRPSGEADVDFATHEDAMQAMSK-DRTNMQHRYIELFLNS 152 (232)
Q Consensus 79 ~~vfV~nLp~~~te~d-l--~~~F~~~-~i~~v~i~~d~-g~~kG~afVeF~s~eda~~Al~~-~g~~i~gR~I~V~~~~ 152 (232)
+..++.++--.+..+- | ...|+.+ ..+...++.+. +...+++|+.|.......++-.. +++.+.-+.|++.-.+
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 5667777655555544 3 6678877 56666777777 88999999999987777777665 7777776665433222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCcceEEEcCCCccccHHHHHhhhCC
Q psy3727 153 SSPRGGVGGSGSIGGFGGSGGGRLGGFGGSDPSSPF-ERRNPNQAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 153 ~~~~~~~~g~~g~gg~gg~~gg~~gg~g~~~~~~~~-~~~~~~~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
.-+ ++. ..-..+...|++.-|-=.++.+-|...|..
T Consensus 177 swe------------------------------dPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~K 213 (290)
T KOG0226|consen 177 SWE------------------------------DPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKK 213 (290)
T ss_pred ccC------------------------------CcccccCccccceeecccccccccHHHHHHHHHh
Confidence 211 111 111122346888889889999999999954
No 180
>KOG4213|consensus
Probab=37.10 E-value=37 Score=28.38 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=39.7
Q ss_pred CcEEEEcCCCCCCCHHHHHhccCCCCceEEEEeecC-C--CCccEEEEEeCCHHHHHHHHHhCCc
Q psy3727 78 RHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN-G--RPSGEADVDFATHEDAMQAMSKDRT 139 (232)
Q Consensus 78 ~~~vfV~nLp~~~te~dl~~~F~~~~i~~v~i~~d~-g--~~kG~afVeF~s~eda~~Al~~~g~ 139 (232)
..+|+.. |.+...++|.+|-+ -++..|.+.... + ..+|--||.|.+.+.|.+.++.+..
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~-~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~ 172 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS-GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEE 172 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc-ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhh
Confidence 3567777 55555556666555 244455554433 3 6789999999999999998886443
No 181
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=35.31 E-value=28 Score=25.47 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=19.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHhcc
Q psy3727 77 SRHTVHMRGLPFRANERDVADFF 99 (232)
Q Consensus 77 s~~~vfV~nLp~~~te~dl~~~F 99 (232)
|..+|-|.|||-...+++|+|..
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeE
Confidence 45899999999999999998763
No 182
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=35.23 E-value=44 Score=29.40 Aligned_cols=33 Identities=6% Similarity=0.083 Sum_probs=26.1
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCC-CceEEEEee
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPV-VPVHVDIHY 111 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~~ 111 (232)
....|.||||++|..-|..+++.. .+..+.++.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 568899999999999999999876 544555544
No 183
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=33.65 E-value=87 Score=23.73 Aligned_cols=46 Identities=9% Similarity=0.050 Sum_probs=34.6
Q ss_pred CHHHHHhccCCCCceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh
Q psy3727 91 NERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136 (232)
Q Consensus 91 te~dl~~~F~~~~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~ 136 (232)
-+.+|.+..+.+.|..-.|..+.-...=|+++|+.+.+..-++|..
T Consensus 25 vWPE~~a~lk~agi~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a~ 70 (105)
T COG3254 25 VWPELLALLKEAGIRNYSIFLDEEENLLFGYWEYEDFEADMAKMAE 70 (105)
T ss_pred ccHHHHHHHHHcCCceeEEEecCCcccEEEEEEEcChHHHHHHHhC
Confidence 4678888889888876666666534556999999977777777764
No 184
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=33.61 E-value=32 Score=25.76 Aligned_cols=23 Identities=4% Similarity=0.040 Sum_probs=15.6
Q ss_pred ceEEEcCCCccccHHHHHhhhCC
Q psy3727 196 AYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 196 ~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
+.|++.+|+-.++.++|+++|..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~ 24 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQ 24 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-S
T ss_pred eEEEEecCCCCcCHHHHHHHHHh
Confidence 57899999999999999999974
No 185
>KOG4008|consensus
Probab=32.80 E-value=25 Score=30.53 Aligned_cols=28 Identities=14% Similarity=0.332 Sum_probs=24.9
Q ss_pred cEEEEcCCCCCCCHHHHHhccCCCCceE
Q psy3727 79 HTVHMRGLPFRANERDVADFFRPVVPVH 106 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~~~i~~ 106 (232)
.++|+-|||..+|++.|..+.+++.++.
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg~vq 68 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLGHVQ 68 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhhhhh
Confidence 8999999999999999999999885443
No 186
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=32.22 E-value=26 Score=24.16 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=26.2
Q ss_pred CCCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEE
Q psy3727 87 PFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADV 122 (232)
Q Consensus 87 p~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afV 122 (232)
.|..-+.+|..+|-+. ++.++.|.-.+--.+|-|||
T Consensus 27 AF~~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 27 AFRLVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 4556678899999887 88898887666334566666
No 187
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=32.01 E-value=1.4e+02 Score=21.00 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=35.7
Q ss_pred cEEEEcCCCCCCCHHHHHhccCC-------C-CceEEEEeecC---CCCcc---EEEEEeCCHHHHHHHHH
Q psy3727 79 HTVHMRGLPFRANERDVADFFRP-------V-VPVHVDIHYEN---GRPSG---EADVDFATHEDAMQAMS 135 (232)
Q Consensus 79 ~~vfV~nLp~~~te~dl~~~F~~-------~-~i~~v~i~~d~---g~~kG---~afVeF~s~eda~~Al~ 135 (232)
|.|+++ |..+++++++.++.+. + .|+.+.+-.+. ...++ .-+++|+|.++.++-..
T Consensus 3 Hivlfk-lk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~~ 72 (97)
T PF07876_consen 3 HIVLFK-LKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQT 72 (97)
T ss_dssp EEEEEE-ESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHHT
T ss_pred EEEEEE-ECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHHc
Confidence 455665 8888999998776643 3 45566665544 21233 35678999888865443
No 188
>KOG3424|consensus
Probab=31.65 E-value=45 Score=25.92 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=25.4
Q ss_pred CCCHHHHHhccCCC-C-ceEEEEee---cC---CCCccEEEEEeCCHHHHH
Q psy3727 89 RANERDVADFFRPV-V-PVHVDIHY---EN---GRPSGEADVDFATHEDAM 131 (232)
Q Consensus 89 ~~te~dl~~~F~~~-~-i~~v~i~~---d~---g~~kG~afVeF~s~eda~ 131 (232)
+++.+||++-.++. + -.++.++. .. |+++|||.| |+|.|.|+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 57888888888763 2 22322222 22 789999976 55555443
No 189
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=31.37 E-value=1.1e+02 Score=22.34 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=30.7
Q ss_pred HHHHHhccCCCCceEEEEee-cC-CCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEE
Q psy3727 92 ERDVADFFRPVVPVHVDIHY-EN-GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELF 149 (232)
Q Consensus 92 e~dl~~~F~~~~i~~v~i~~-d~-g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~ 149 (232)
.+.|.+.|+--....+.|.+ |. | -+|.+.+.+|.+.|+..+...-....|+|.
T Consensus 31 ~~kI~~~f~l~~~~~~~l~Y~Dedg-----d~V~l~~D~DL~~a~~~~~~~~~~~~lrl~ 85 (91)
T cd06398 31 REKVEELFSLSPDADLSLTYTDEDG-----DVVTLVDDNDLTDAIQYFCSGSRLNPLRID 85 (91)
T ss_pred HHHHHHHhCCCCCCcEEEEEECCCC-----CEEEEccHHHHHHHHHHHhccCCCceEEEE
Confidence 34445555322223555544 33 4 689999999999999974333333444443
No 190
>KOG1596|consensus
Probab=29.86 E-value=4e+02 Score=23.69 Aligned_cols=6 Identities=50% Similarity=0.822 Sum_probs=2.2
Q ss_pred CCCCCC
Q psy3727 2 RPVSGG 7 (232)
Q Consensus 2 ~~~~~~ 7 (232)
++++-+
T Consensus 4 ~~~~~g 9 (317)
T KOG1596|consen 4 KPGSRG 9 (317)
T ss_pred CCCCCC
Confidence 333333
No 191
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.68 E-value=1.5e+02 Score=18.80 Aligned_cols=47 Identities=6% Similarity=-0.019 Sum_probs=28.0
Q ss_pred HHHHhccCCC--CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCc
Q psy3727 93 RDVADFFRPV--VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRT 139 (232)
Q Consensus 93 ~dl~~~F~~~--~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~~g~ 139 (232)
.+|-+.|.++ +|..+.........+..-.++.++.+++.++|+.++-
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~~G~ 62 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQERGV 62 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHHCCc
Confidence 4566666665 6666654332212234455666788888888887654
No 192
>COG4907 Predicted membrane protein [Function unknown]
Probab=29.23 E-value=53 Score=31.46 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=23.5
Q ss_pred CHHHHHhccCCC------CceEEEEeecCCCCccEEEEEeCC----HHHHHHHHHh
Q psy3727 91 NERDVADFFRPV------VPVHVDIHYENGRPSGEADVDFAT----HEDAMQAMSK 136 (232)
Q Consensus 91 te~dl~~~F~~~------~i~~v~i~~d~g~~kG~afVeF~s----~eda~~Al~~ 136 (232)
.|+..+.|.++| .+.+|+|-.+- ..+++ .+.+.+|+++
T Consensus 487 ~W~aFKnfLsd~s~lke~~pesI~~W~~y--------lVYatALGV~dkVvkam~~ 534 (595)
T COG4907 487 KWQAFKNFLSDYSQLKEAKPESIHLWEQY--------LVYATALGVSDKVVKAMRK 534 (595)
T ss_pred HHHHHHHHHHhHHHHhhCCCcceehHhhh--------hhhhhhhccHHHHHHHHHH
Confidence 477788887754 45677775432 22222 3777888886
No 193
>KOG0113|consensus
Probab=26.03 E-value=47 Score=29.95 Aligned_cols=24 Identities=4% Similarity=-0.193 Sum_probs=21.6
Q ss_pred cceEEEcCCCccccHHHHHhhhCC
Q psy3727 195 QAYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 195 ~~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
-.+|+|.-|+|++++.+|+..|+.
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~ 124 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEK 124 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHh
Confidence 367999999999999999999974
No 194
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=26.03 E-value=71 Score=23.74 Aligned_cols=23 Identities=9% Similarity=-0.016 Sum_probs=20.2
Q ss_pred ceEEEcCCCccccHHHHHhhhCC
Q psy3727 196 AYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 196 ~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
+.|-++|+|-..|.++|++++..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~ 24 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDE 24 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHH
Confidence 46889999999999999998864
No 195
>KOG1855|consensus
Probab=23.22 E-value=94 Score=29.44 Aligned_cols=23 Identities=4% Similarity=-0.096 Sum_probs=20.2
Q ss_pred ceEEEcCCCccccHHHHHhhhCC
Q psy3727 196 AYVENTALSRSAVKDRAINVQLC 218 (232)
Q Consensus 196 ~~v~~~gLp~~~t~~dl~~fF~~ 218 (232)
..|.+.|||.+-.-+.|.++|.+
T Consensus 232 rtivaenLP~Dh~~enl~kiFg~ 254 (484)
T KOG1855|consen 232 RTIVAENLPLDHSYENLSKIFGT 254 (484)
T ss_pred ceEEEecCCcchHHHHHHHHhhc
Confidence 45778899999999999999984
No 196
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=22.50 E-value=65 Score=20.21 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=14.0
Q ss_pred EcCCCccccHHHHHhhh
Q psy3727 200 NTALSRSAVKDRAINVQ 216 (232)
Q Consensus 200 ~~gLp~~~t~~dl~~fF 216 (232)
+.++.|-+|+++|++.-
T Consensus 1 L~~~dyPa~k~~Lv~~A 17 (44)
T PF11387_consen 1 LKGVDYPADKDELVRHA 17 (44)
T ss_pred CCCCCCCCCHHHHHHHH
Confidence 35789999999998864
No 197
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=22.04 E-value=87 Score=27.26 Aligned_cols=31 Identities=6% Similarity=0.050 Sum_probs=22.8
Q ss_pred EEEEcCCCCCCCHHHHHhccCCC-CceEEEEe
Q psy3727 80 TVHMRGLPFRANERDVADFFRPV-VPVHVDIH 110 (232)
Q Consensus 80 ~vfV~nLp~~~te~dl~~~F~~~-~i~~v~i~ 110 (232)
.+.|.||||.++.+-|..+.... .++.+.++
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~ 138 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEERDPIRDMVVM 138 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhcCCCCCeeEEE
Confidence 57899999999999998888653 34444333
No 198
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=21.82 E-value=3.2e+02 Score=19.81 Aligned_cols=52 Identities=10% Similarity=0.195 Sum_probs=32.8
Q ss_pred EEEEcCCCCCCCHHHHH----hccCCCCceEEEEe-ecC-CCCccEEEEEeCCHHHHHHHHHh
Q psy3727 80 TVHMRGLPFRANERDVA----DFFRPVVPVHVDIH-YEN-GRPSGEADVDFATHEDAMQAMSK 136 (232)
Q Consensus 80 ~vfV~nLp~~~te~dl~----~~F~~~~i~~v~i~-~d~-g~~kG~afVeF~s~eda~~Al~~ 136 (232)
-|+|-.++..++-++|. +.|+-..-..++|. .|. |.+ |+|.|.++.+.|+..
T Consensus 10 di~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp-----~tiSS~~EL~EA~rl 67 (83)
T cd06404 10 DIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDP-----CTISSQMELEEAFRL 67 (83)
T ss_pred cEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCc-----eeecCHHHHHHHHHH
Confidence 46666677777766654 44444322222332 243 654 789999999999995
No 199
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=21.30 E-value=1.3e+02 Score=21.73 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=17.3
Q ss_pred ceEEEEeecC--CCCccEEEEEeCC
Q psy3727 104 PVHVDIHYEN--GRPSGEADVDFAT 126 (232)
Q Consensus 104 i~~v~i~~d~--g~~kG~afVeF~s 126 (232)
|.+|+|..-. ++.+++|-|+|.+
T Consensus 3 itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 3 ITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred cEEEEEEEecCCCCEEEEEEEEECC
Confidence 4566665433 8999999999985
No 200
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=21.15 E-value=93 Score=26.62 Aligned_cols=27 Identities=7% Similarity=0.041 Sum_probs=21.5
Q ss_pred EEEEcCCCCCCCHHHHHhccCCCCceE
Q psy3727 80 TVHMRGLPFRANERDVADFFRPVVPVH 106 (232)
Q Consensus 80 ~vfV~nLp~~~te~dl~~~F~~~~i~~ 106 (232)
.+.|.||||.++.+.|..++.......
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~~~ 122 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKFRL 122 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCCce
Confidence 478999999999999999997443333
No 201
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=20.95 E-value=1.3e+02 Score=20.62 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=10.4
Q ss_pred HHHHhccCCC-Cce
Q psy3727 93 RDVADFFRPV-VPV 105 (232)
Q Consensus 93 ~dl~~~F~~~-~i~ 105 (232)
++|++||+++ +|.
T Consensus 9 ~~iR~~fs~lG~I~ 22 (62)
T PF15513_consen 9 AEIRQFFSQLGEIA 22 (62)
T ss_pred HHHHHHHHhcCcEE
Confidence 6899999999 443
No 202
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=20.91 E-value=84 Score=21.68 Aligned_cols=60 Identities=3% Similarity=0.026 Sum_probs=40.0
Q ss_pred HHHHhccCC--CCceEEEEeecC--CCCccEEEEEeCCHHHHHHHHHhCCceeeeeEEEEEecCCC
Q psy3727 93 RDVADFFRP--VVPVHVDIHYEN--GRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSS 154 (232)
Q Consensus 93 ~dl~~~F~~--~~i~~v~i~~d~--g~~kG~afVeF~s~eda~~Al~~~g~~i~gR~I~V~~~~~~ 154 (232)
++|.+-|.. |.|..|+-+..+ ..+--.-||+.+...+.++++ +=+.|.+..|+|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~--~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY--KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee--ehHhhCCeEEEEecCCCC
Confidence 456666765 478888777766 566778888888776655544 344566777888765443
No 203
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=20.87 E-value=2.3e+02 Score=17.71 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=28.3
Q ss_pred HHHHhccCCC--CceEEEEeecCCCCccEEEEEeCCHHHHHHHH
Q psy3727 93 RDVADFFRPV--VPVHVDIHYENGRPSGEADVDFATHEDAMQAM 134 (232)
Q Consensus 93 ~dl~~~F~~~--~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al 134 (232)
.+|-+.|.+. +|..+.+.... ..+....+++++.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR-GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECCHHHHHHHh
Confidence 4566667655 66666655443 45678888889988888876
No 204
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=20.81 E-value=99 Score=25.96 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=29.6
Q ss_pred CHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh
Q psy3727 91 NERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136 (232)
Q Consensus 91 te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~ 136 (232)
+.++.++|.+.+ ... +.|..| |...|-+.+...+.++|.+|++.
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKad-Gla~GKGV~i~~~~~eA~~~l~~ 69 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKAD-GLAAGKGVVIADDREEALEALRE 69 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEES-SSCTTTSEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCc-eEEccC-CCCCCCEEEEeCCHHHHHHHHHH
Confidence 567777777765 222 444444 44444567777999999999995
No 205
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=20.67 E-value=1.4e+02 Score=24.01 Aligned_cols=58 Identities=17% Similarity=0.331 Sum_probs=36.1
Q ss_pred cEEEEcCCC-CCCCHHHHHhccCCC-CceEEEEeecCCCCccEEEEEeCCHHHHHHHHHh
Q psy3727 79 HTVHMRGLP-FRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136 (232)
Q Consensus 79 ~~vfV~nLp-~~~te~dl~~~F~~~-~i~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~ 136 (232)
+.+|+++|- +..+-++|+.+...+ ....-.+...+-.+-.-+.|+|..+-++..-|..
T Consensus 5 fla~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~~~~~sv~V~f~ipreaa~~Lr~ 64 (149)
T PF13820_consen 5 FLAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKVEPWNSVRVTFSIPREAATRLRQ 64 (149)
T ss_pred EEEEECChhhhHHHHHHHHHHHHHHHhcccccceeeccccCceEEEEEechHHHHHHHHH
Confidence 456677774 334556677766654 3322222222224455799999999999888885
No 206
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=20.03 E-value=2.6e+02 Score=19.05 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=34.7
Q ss_pred EcCCCCCCCHHHHHhccCCC-Cc--eEEEEeecCCCCccEEEEEeCCHHHHHHHHHh
Q psy3727 83 MRGLPFRANERDVADFFRPV-VP--VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136 (232)
Q Consensus 83 V~nLp~~~te~dl~~~F~~~-~i--~~v~i~~d~g~~kG~afVeF~s~eda~~Al~~ 136 (232)
.=.||..++-++|.+..++. .. ..+.|.+.. .-|. +|...+.+|.+.|++.
T Consensus 14 ~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D--edgd-~v~l~sd~Dl~~a~~~ 67 (81)
T smart00666 14 RLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD--EDGD-LVSLTSDEDLEEAIEE 67 (81)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC--CCCC-EEEecCHHHHHHHHHH
Confidence 33467788988888777643 32 245554432 1123 8999999999999996
Done!