RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3727
(232 letters)
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 54.8 bits (131), Expect = 1e-10
Identities = 49/97 (50%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 67 GRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFA 125
G + + H VHMRGLP+RA E D+ +FF P+ +GR +GEADV+FA
Sbjct: 4 GSSGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFA 63
Query: 126 THEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS 162
THEDA+ AM+KD+ NMQHRY+ELFLNS++ G G S
Sbjct: 64 THEDAVAAMAKDKANMQHRYVELFLNSTAGTSGSGPS 100
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 51.4 bits (122), Expect = 2e-09
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 63 PRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRP---VVPVHVDIHYENGRPSGE 119
P R + S + V+++GLPF A + V DFF+ V + NG+ +GE
Sbjct: 3 PSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGE 62
Query: 120 ADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPR 156
V+F D A+ + + M +R+I++ + +
Sbjct: 63 GFVEFRNEADYKAALCRHKQYMGNRFIQVHP--ITKK 97
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 47.7 bits (113), Expect = 2e-08
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIH---YENGRPSGEADVDFATHED 129
S P + ++ +PF + ++ DFF + + E G P+GEA V F + ++
Sbjct: 4 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 63
Query: 130 AMQAMSK-DRTNMQHRYIELFL 150
A A+ + + R ++L L
Sbjct: 64 ATAAVIDLNDRPIGSRKVKLVL 85
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 47.9 bits (113), Expect = 3e-08
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATH 127
N + V +RGLPF ++ ++ FF + V + GR +GEA V FA+
Sbjct: 8 NSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQ 67
Query: 128 EDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGS 162
E A +A+ K + + HRYIE+F +S + G S
Sbjct: 68 EIAEKALKKHKERIGHRYIEIFKSSRAEVRTSGPS 102
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 47.5 bits (112), Expect = 4e-08
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQ 132
++ H+ +PF + DV F + +H NG+ G+A V F +DA +
Sbjct: 6 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARK 65
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGG 170
+ R + R + + + + + G G
Sbjct: 66 SERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKSG 103
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 46.5 bits (110), Expect = 6e-08
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 81 VHMRGLPFRANERDVADFFR---PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
+ + GL ++ + + ++F V V R G V F + +++
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62
Query: 138 RTNMQHRYIE 147
R + + I+
Sbjct: 63 RHELDSKTID 72
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 44.0 bits (103), Expect = 7e-07
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 77 SRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN--GRPSGEADVDFATHEDAMQAM 134
+V+++G P A D+ ++ V G V F + E A + +
Sbjct: 5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFV 64
Query: 135 SKDRTNMQHRYIE 147
+ +
Sbjct: 65 ETPGQKYKETDLL 77
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 43.9 bits (103), Expect = 1e-06
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRP---VVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
TV L R RD+ DFF V V + + R G A V+F + A+
Sbjct: 20 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGL 79
Query: 137 DRTNMQHRYIE 147
+ I
Sbjct: 80 TGQRLLGVPII 90
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 42.7 bits (100), Expect = 1e-06
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVHVDIHY---ENGRPSGEADVDFATHEDAMQAMSKD 137
+ + GL + ++D+ D+F V GR G V F E + M +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 61
Query: 138 RTNMQHRYIE 147
+ + I+
Sbjct: 62 EHKLNGKVID 71
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 43.0 bits (101), Expect = 1e-06
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPV-----VPVHVDIHYENGRPSGEADVDFATHEDA 130
+ + +R +PF+AN+R++ + F V + + G G VDF T +DA
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTG-TGAHRGFGFVDFITKQDA 64
Query: 131 MQAMSK--DRTNMQHRYIEL 148
+A + T++ R + L
Sbjct: 65 KKAFNALCHSTHLYGRRLVL 84
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 43.1 bits (101), Expect = 1e-06
Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DR 138
T+ + L F E ++ + F + + + ++G+ G A ++F + DA + + +
Sbjct: 18 TLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQG 75
Query: 139 TNMQHRYIELFLNSSSPRGGVGG 161
+ R + L + +GG G
Sbjct: 76 AEIDGRSVS--LYYTGEKGGTRG 96
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 41.6 bits (97), Expect = 4e-06
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPV---VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+ + GL F + + F V R G V +AT E+ AM+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 137 DRTNMQHRYIE 147
+ R +E
Sbjct: 68 RPHKVDGRVVE 78
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 41.1 bits (96), Expect = 5e-06
Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 80 TVHMRGLPFRANERDVADFFR---PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
++++ L E + + F P++ + V R G A V+F DA +A+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 137 -DRTNMQHRYIEL 148
+ ++ + + +
Sbjct: 62 MNFDVIKGKPVRI 74
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 41.1 bits (96), Expect = 6e-06
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 80 TVHMRGLPFRANERDVADFFR---PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+++ LP + + F +V ++ GRP G A V + E+A +A+S
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 67
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 40.9 bits (95), Expect = 7e-06
Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 77 SRHTVHMRGLPFRANERDVADFFR---PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
S+ + + LP + + F + + G+ G V++ +DA +A
Sbjct: 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 60
Query: 134 MSK-DRTNMQHRYIEL 148
++ + +Q + I++
Sbjct: 61 INTLNGLRLQTKTIKV 76
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 40.9 bits (95), Expect = 7e-06
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 81 VHMRGLPFRANERDVADFFRPV---VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
+ + GL DV +F + R G V F + + +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIH 61
Query: 138 RTNMQHRYIE 147
+ ++ +E
Sbjct: 62 FHEINNKMVE 71
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 41.5 bits (97), Expect = 7e-06
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-DR 138
+++R LP++ ++ D F P+ G A V + DA A
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSG 68
Query: 139 TNMQHRYI 146
N+ +RY+
Sbjct: 69 FNVCNRYL 76
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 39.9 bits (93), Expect = 1e-05
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 81 VHMRGLPFRANERDVADFFR---PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKD 137
+ + GL E + ++F V + + + + + G + F E + M K
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61
Query: 138 RTNMQHRYIE 147
N+ E
Sbjct: 62 YHNVGLSKCE 71
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 40.2 bits (93), Expect = 1e-05
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPV-HVDIHYENGRPSGEADVDFATHEDAMQAMSKDR 138
TV ++ LP N+ V +F+ P+ HVD+ + A ++FA ++ A+ A++K
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTH 61
Query: 139 TNMQHRYIE 147
+ I
Sbjct: 62 KVVGQNEII 70
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 39.7 bits (92), Expect = 2e-05
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFR---PVVPVHVDIHYENGRPSGEADVDFATH 127
N ++ + + GL ERD+ + F P+ V + ++ R G A V F
Sbjct: 2 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 61
Query: 128 EDAMQAMSK-DRTNMQHRYIE 147
+DA +A + + + R I
Sbjct: 62 DDAKEAKERANGMELDGRRIR 82
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 39.7 bits (92), Expect = 2e-05
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPS-GEADVDFATHED 129
N S + +H+ +PFR + D+ F + N R S G V F D
Sbjct: 4 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 63
Query: 130 AMQAMSK-DRTNMQHRYIE 147
A +A K T ++ R IE
Sbjct: 64 ADRAREKLHGTVVEGRKIE 82
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 41.5 bits (96), Expect = 2e-05
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 80 TVHMRGLPFRANERDVADFFR---PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+ + GL F + + F + V R G V +AT E+ AM+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 137 DRTNMQHRYIE 147
+ R +E
Sbjct: 68 RPHKVDGRVVE 78
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 39.2 bits (91), Expect = 3e-05
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 80 TVHMRGLPFRANERDVADFFR---PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+ + GLP++ E+D+ ++F V+ V V + G G V F +E ++ M
Sbjct: 10 DLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM-S 68
Query: 137 DRTNMQHRYIE 147
R + R+ +
Sbjct: 69 QRHMIDGRWCD 79
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 38.9 bits (90), Expect = 5e-05
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 76 PSRHTVHMRGLPFRANERDVADF---FRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
++ +++ GL +++ + F + + + + YE + G A V+F EDA
Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAA 62
Query: 133 AMSK-DRTNMQHRYIEL 148
A+ + + + R I +
Sbjct: 63 AIDNMNESELFGRTIRV 79
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 38.1 bits (88), Expect = 7e-05
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 79 HTVHMRGLPFRANERDVADF---FRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMS 135
H + + GLP N+ V + F P+ ++ G G A ++ QA++
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 136 K-DRTNMQHRYIELFLNSSSPRG 157
+ + + + + S +
Sbjct: 62 GLNGMQLGDKKLLVQRASVGAKN 84
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 38.1 bits (88), Expect = 8e-05
Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 77 SRHTVHMRGLPFRANERDVADFFR---PVVPVHVDIHYENGRPSGEADVDFATHEDAMQA 133
S + + LP +R++ FR P+ + Y+ G G A VDF + D+ +A
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA 60
Query: 134 MSK-DRTNMQHRYIEL 148
+ + ++++ +++
Sbjct: 61 IKVLNGITVRNKRLKV 76
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 38.1 bits (88), Expect = 8e-05
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Query: 84 RGLPFRANERDVADFFRPVVPVHVDI------HYENGRPSGEADVDFATHEDAMQAMSK- 136
+ L F E + F V + G V++ E A +A+ +
Sbjct: 4 KNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQL 63
Query: 137 DRTNMQHRYIELFLNSSSPR 156
+ +E+ ++ + +
Sbjct: 64 QGHTVDGHKLEVRISERATK 83
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 38.5 bits (89), Expect = 9e-05
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 78 RHTVHMRGLPFRANERDVADFFR---PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAM 134
+ + GL F E + +++ + V + R G V F++ + AM
Sbjct: 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
Query: 135 SKDRTNMQHRYIE 147
+ ++ R +E
Sbjct: 80 AARPHSIDGRVVE 92
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 38.0 bits (88), Expect = 9e-05
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDIHYEN---GRPSGEADVDFATHEDAMQAMSK 136
T+++ L F E + + F + I + G V++ + DA AM
Sbjct: 9 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 68
Query: 137 -DRTNMQHRYIELFLNSSSPRG 157
+ T + R I ++ G
Sbjct: 69 INGTRLDDRIIRTDWDAGFKEG 90
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 38.0 bits (88), Expect = 1e-04
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 70 VNESSGPSRHTVHMRGLPFRANERDVADFFRPVVP-VHVDIHYENGRPSGEADVDFATHE 128
V S P TV+ G+ ++ + F P + + + G + V F+THE
Sbjct: 10 VVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF----PEKGYSFVRFSTHE 65
Query: 129 DAMQAMSK-DRTNMQHRYIELFLNSSSP 155
A A+ + T ++ ++ + SP
Sbjct: 66 SAAHAIVSVNGTTIEGHVVKCYWGKESP 93
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 37.4 bits (86), Expect = 1e-04
Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH----VDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+ + L +E+ + D F + + + G G A ++FA+ + + A+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 137 -DRTNMQHRYIEL-FLNSSSPRG 157
+ + +R I + + +G
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSKG 83
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 36.9 bits (85), Expect = 2e-04
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPV---HVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
T+ + L E D+ + FRP + ++ G+ G A + F EDA +A++
Sbjct: 10 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 69
Query: 137 -DRTNMQHRYIEL 148
H + +
Sbjct: 70 VSGFGYDHLILNV 82
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 37.4 bits (86), Expect = 2e-04
Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 4/68 (5%)
Query: 70 VNESSGPSRHT-VHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHE 128
+ S ++ V GL + + V + N + + T E
Sbjct: 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP---YSFARYRTTE 67
Query: 129 DAMQAMSK 136
++ +A
Sbjct: 68 ESKRAYVT 75
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 37.4 bits (86), Expect = 2e-04
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPV---HVDIHYENGRPSGEADVDFATHE 128
+ GP + + LP ++D+ F P V V I + V +
Sbjct: 12 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 71
Query: 129 DAMQAMSK-DRTNMQHRYIE 147
A A+ + + + ++
Sbjct: 72 SAQAAIQSMNGFQIGMKRLK 91
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 37.0 bits (85), Expect = 2e-04
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVPVHVDI-----HYENGRPSGEADVDFATHEDAMQAM 134
+ + G+P ++ + V +D+ + + G A V++ +H A A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 135 SKDRTNMQHRYIEL 148
K + I+L
Sbjct: 63 RK----LMPGRIQL 72
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 37.0 bits (85), Expect = 3e-04
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 79 HTVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMS 135
+T + LP+ E + +FFR + R G +F + + A+S
Sbjct: 16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 75
Query: 136 KDRTNMQHRYIELFLNSSSPRGGVGGSG 163
+ ++ ++ I + + + G S
Sbjct: 76 LNEESLGNKRIRVDVADQAQDKDSGPSS 103
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 36.6 bits (84), Expect = 3e-04
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 73 SSGPS-RHTVHMRGLPFRANERDVADFFRPV---VPVHVDIHYENGRPSGEADVDFATHE 128
SSG S + +R L + ++E D+ F +H I +P G A V F E
Sbjct: 2 SSGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPE 61
Query: 129 DAMQAMSK-DRTNMQHRYIELFLNSSSPRGGVGGSGS 164
A++A ++ D Q R + + ++ G S
Sbjct: 62 HAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQSGPSS 98
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 35.7 bits (82), Expect = 4e-04
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 81 VHMRGLPFRANERDVADFFRPVVP-VHVDIHY-ENGRPSGEADVDFATHEDAMQAMSK-D 137
+ + L F ++ D+ + F +HY +GR G ADV F DA++AM + +
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 62
Query: 138 RTNMQHRYIELFLNSS 153
+ R + + L +S
Sbjct: 63 GVPLDGRPMNIQLVTS 78
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 36.5 bits (84), Expect = 5e-04
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 3/85 (3%)
Query: 74 SGPSR-HTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
+G S + + L + + F V + I +A + +A A
Sbjct: 2 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTV-LKIITFTKNNQFQALLQYADPVSAQH 60
Query: 133 AMSK-DRTNMQHRYIELFLNSSSPR 156
A D N+ + L ++ S
Sbjct: 61 AKLSLDGQNIYNACCTLRIDFSKLT 85
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 35.8 bits (82), Expect = 6e-04
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVP-VHVDIHYENGRPSGEADVDFATHEDA 130
E G R T+++ L E + F + P + E+ V+F H DA
Sbjct: 3 EDDGQPR-TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDA 61
Query: 131 MQAMSK-DRTNMQHRYIEL 148
A++ + + + +++
Sbjct: 62 AAALAAMNGRKILGKEVKV 80
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 35.8 bits (82), Expect = 7e-04
Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 76 PSRHTVHMRGLPFRANERDV----ADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAM 131
P+ T+++ L + + ++ F + + + + G+A V F A
Sbjct: 2 PNH-TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSAT 60
Query: 132 QAMSK-DRTNMQHRYIEL 148
A+ + + +
Sbjct: 61 NALRSMQGFPFYDKPMRI 78
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 35.5 bits (81), Expect = 7e-04
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 80 TVHMRGLPFRANERDVADFFR---PVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
T+ M P +R++ D + V A +D + EDA + K
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 137 -DRTNMQHRYIE 147
+ ++ +
Sbjct: 63 LNGLKIEGYTLV 74
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 35.3 bits (81), Expect = 8e-04
Identities = 10/78 (12%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 72 ESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAM 131
E + R + + LP E ++ F +++ + T A
Sbjct: 2 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGF---GFIRLETRTLAE 58
Query: 132 QAMSK-DRTNMQHRYIEL 148
A + D ++ + + +
Sbjct: 59 IAKVELDNMPLRGKQLRV 76
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 35.0 bits (80), Expect = 0.001
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHED 129
S TV++ GL + +E + + F PV + G+ G V+F + ED
Sbjct: 4 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 63
Query: 130 AMQAMSK-DRTNMQHRYIEL 148
A A+ D + + I +
Sbjct: 64 ADYAIKIMDMIKLYGKPIRV 83
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 34.6 bits (79), Expect = 0.001
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 80 TVHMRGLPFRANERDVADFFRPV---VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
+++ GLP ++++ F + + + G G + F +A +A+
Sbjct: 8 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 67
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 34.6 bits (79), Expect = 0.001
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 80 TVHMRGLPFRANERDVADFFRPV-VPVHVDIHYENGRPSGEADVDFATHEDAMQAMSK-D 137
+ ++ L + + + D F + + + G V F T E A +A+ K +
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 69
Query: 138 RTNMQHRYIE 147
+ R +
Sbjct: 70 GMLLNDRKVF 79
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 34.4 bits (78), Expect = 0.002
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 80 TVHMRGLPFRANERDVADFFRPVVP---VHVDIHYENGRPSGEADVDFATHEDAMQAMSK 136
TV +R L F + E + + + V V +H + G A F T E A + ++
Sbjct: 10 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 69
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 33.6 bits (76), Expect = 0.003
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAM 134
PS T+H+ +P +E D+ F V V + A + + E+A+QA+
Sbjct: 9 PSA-TLHLSNIPPSVSEEDLKVLFSSNGGV-VKGFKFFQKDRKMALIQMGSVEEAVQAL 65
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 32.8 bits (74), Expect = 0.004
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 81 VHMRGLPFRANERDVADFFRPVVPVH---VDIHYENGRPSGEADVDFATHEDAMQAMSK- 136
+++RGL ++D+ +P + + + G VDF + A +A++
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 137 DRTNMQHRYI 146
+ +Q +
Sbjct: 61 KASGVQAQMA 70
>d1nh1a_ e.45.1.1 (A:) Type III effector AvrB {Pseudomonas syringae
[TaxId: 317]}
Length = 290
Score = 31.4 bits (71), Expect = 0.065
Identities = 20/86 (23%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 135 SKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGG----RLGGFGGSDPS-SPFE 189
SK T Y + NS G G I F G RL +P S F
Sbjct: 28 SKSNTPENRAYCQSMYNSIRSAGDEISRGGITSFEELWGRATEWRLSKLQRGEPLYSAFA 87
Query: 190 R-RNPNQAYVENTALSRSAVKDRAIN 214
R + V +V R ++
Sbjct: 88 SERTSDTDAVTPLVKPYKSVLARVVD 113
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 30.2 bits (67), Expect = 0.075
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 7/100 (7%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHED- 129
+ S VH+RGL E D+ + + +A V+F +
Sbjct: 9 HHKVSVSP-VVHVRGLCESVVEADLVEALE---KFGTICYVMMMPFKRQALVEFENIDSA 64
Query: 130 --AMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGG 167
+ + + + ++S G SG G
Sbjct: 65 KECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNSGPSSG 104
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 30.1 bits (67), Expect = 0.079
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 76 PSRHTVHMRGLPFRANERDVADFFRPVVPV-----------HVDIHYENGRPSGEADVDF 124
++++GL D+ADFF+ V H+ + E G+P G+A V +
Sbjct: 6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSY 65
Query: 125 ATHEDAMQAMSK-DRTNMQHRYIEL 148
A A+ D + Q +++
Sbjct: 66 EDPPTAKAAVEWFDGKDFQGSKLKV 90
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 27.3 bits (60), Expect = 0.49
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 7/94 (7%)
Query: 73 SSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQ 132
SSG S V + E ++ +FF V + A V FA + A
Sbjct: 2 SSGSS--GVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQS 57
Query: 133 AMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIG 166
+ ++ + ++++ P+ S G
Sbjct: 58 LC-GEDLIIKGISVH--ISNAEPKHNSNSGPSSG 88
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 26.7 bits (58), Expect = 1.0
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 71 NESSGPSRHTVHMRGLPFRANERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDA 130
++ G +H+R LP E +V P V + + +A ++ AT E A
Sbjct: 1 DKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKN---QAFLELATEEAA 57
Query: 131 MQAMSKDRTNMQH 143
+ ++ H
Sbjct: 58 ITMVNYYSAVTPH 70
>d2chca1 d.17.4.25 (A:1-167) Uncharacterized protein Rv3472
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 167
Score = 27.1 bits (59), Expect = 1.2
Identities = 13/71 (18%), Positives = 19/71 (26%)
Query: 43 GFRGGFNNDRWNDRPGGFAGPRPGGRWVNESSGPSRHTVHMRGLPFRANERDVADFFRPV 102
G+ G F D + G RP R ++ H+ + DVA
Sbjct: 32 GWAGCFTEDGAFEFDGWVIRGRPALREYADAHARVVRGRHLTTDLLYEVDGDVATGRSAS 91
Query: 103 VPVHVDIHYEN 113
V
Sbjct: 92 VVTLATAAGYK 102
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 26.4 bits (58), Expect = 1.3
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 5/56 (8%)
Query: 92 ERDVADFFRPVVPVHVDIHYENGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIE 147
D+ + + + P G A V F E+A + + R+
Sbjct: 33 REDLRVECSKFGQI-RKLLLFDRHPDGVASVSFRDPEEADYCI----QTLDGRWFG 83
>d1gska3 b.6.1.3 (A:357-510) Spore coat protein A, CotA {Bacillus
subtilis [TaxId: 1423]}
Length = 154
Score = 26.6 bits (58), Expect = 1.7
Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 47 GFNNDRWNDRPGGFAGPRPGG--RWVNESSGPSRHTVHMRGLPFRANERDVADFFRPVVP 104
NN RW+D P+ G W + H +H+ + FR +R D R
Sbjct: 31 LLNNKRWHDPV--TETPKVGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQES 88
Query: 105 VHVDIHYENGRPSGE 119
+ P
Sbjct: 89 GELSYTGPAVPPPPS 103
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 446
Score = 25.7 bits (55), Expect = 6.5
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 98 FFRPVVPVHVDIHYE------NGRPSGEADVDFATHEDAMQAMSKDRTNMQHRYIELFLN 151
F PV+P+ E N R A F+ +E ++ M + + N
Sbjct: 333 IFGPVMPIVCVRSLEEAIQFINQREKPLALYVFSNNEKVIKKMIA-----ETSSGGVTAN 387
Query: 152 SSSPRGGVGGSGSIGGFGGSGGGRLGGFGG 181
+ GG G SG G G
Sbjct: 388 DV-IVHITVPTLPFGGVGNSGMGAYHGKKS 416
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 170
Score = 24.7 bits (53), Expect = 7.8
Identities = 9/42 (21%), Positives = 11/42 (26%)
Query: 26 FGGGSGPGPIRGGPPRGGFRGGFNNDRWNDRPGGFAGPRPGG 67
GG P P G D W D+ + P
Sbjct: 125 LGGLLFPASNLRLPLVPALDGCLRRDSWLDKQAEISASAPTS 166
>d1ni9a_ e.7.1.2 (A:) Glycerol metabolism protein GlpX {Escherichia
coli [TaxId: 562]}
Length = 328
Score = 25.2 bits (55), Expect = 7.8
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 119 EADVDFATHEDAMQAMSKDRTNMQHRYIELFLNSSSPRGGVGGSGSIGGFGGSGGGRL 176
V D ++ T M +++ GV + I G GRL
Sbjct: 180 GVRVFAIPDGDVAASI---LTCMPDSEVDVLYGIGGAPEGVVSAAVIRALDGDMNGRL 234
>d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus,
different strains [TaxId: 11520]}
Length = 390
Score = 24.8 bits (54), Expect = 9.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 27 GGGSGPGPIRGGPPRGGFRGGFNNDRWNDRPGGFAG 62
G +GP G RGG +GGF + R + G +
Sbjct: 255 GSITGPCESNGDKGRGGIKGGFVHQRMASKIGRWYS 290
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.141 0.455
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 956,113
Number of extensions: 46840
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 80
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)