BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3734
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 59/93 (63%), Gaps = 20/93 (21%)
Query: 41 GVPS-----SGRGEEDVSEG----EMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTH 91
G PS SG VS+G E ++YA PKRKQRRYRTTFTSFQLEELEKAFSRTH
Sbjct: 51 GAPSGASGASGGTNSPVSDGNSDCEADEYA--PKRKQRRYRTTFTSFQLEELEKAFSRTH 108
Query: 92 YPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124
YPDVFT + L MK+ L + R +Q +
Sbjct: 109 YPDVFT--------REELAMKIGLTEAR-IQVW 132
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124
KRKQRRYRTTFTS+QLEELE+AF +THYPDVFT + L M+LDL + R VQ +
Sbjct: 327 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFT--------REELAMRLDLTEAR-VQVW 377
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124
KRKQRRYRTTFTS+QLEELE+AF +THYPDVFT + L M+LDL + R VQ +
Sbjct: 212 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFT--------REELAMRLDLTEAR-VQVW 262
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus
purpuratus GN=ALX PE=2 SV=2
Length = 327
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124
KRKQRRYRTTFTS+QLEELE+AF +THYPDVFT + L M++DL + R VQ +
Sbjct: 209 KRKQRRYRTTFTSYQLEELERAFCKTHYPDVFT--------REELAMRVDLTEAR-VQVW 259
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 70.1 bits (170), Expect = 5e-12, Method: Composition-based stats.
Identities = 36/57 (63%), Positives = 42/57 (73%), Gaps = 8/57 (14%)
Query: 63 LPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNR 119
L KRKQRRYRTTFTS+QLEELE+AF +THYPDVFT + L M+LDL + R
Sbjct: 327 LLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFT--------REELAMRLDLTEAR 375
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 70.1 bits (170), Expect = 5e-12, Method: Composition-based stats.
Identities = 36/57 (63%), Positives = 42/57 (73%), Gaps = 8/57 (14%)
Query: 63 LPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNR 119
L KRKQRRYRTTFTS+QLEELE+AF +THYPDVFT + L M+LDL + R
Sbjct: 323 LLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFT--------REELAMRLDLTEAR 371
>sp|Q90277|VSX1_CARAU Visual system homeobox 1 OS=Carassius auratus GN=vsx1 PE=1 SV=1
Length = 341
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 11/100 (11%)
Query: 49 EEDVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPF 108
++D G+ D + KRK+RR+RT FTS QLEELEKAF HYPDV+ +
Sbjct: 129 DDDCLSGDRNDGKNSQKRKKRRHRTVFTSHQLEELEKAFHEAHYPDVYA--------REM 180
Query: 109 LLMKLDLVKNRPVQTYVAY--GTGRKKDLVYRRIEVEIKF 146
L MK +L ++R +Q + RK++ + R V ++
Sbjct: 181 LAMKTELPEDR-IQVWFQNRRAKWRKREKCWGRSSVMAEY 219
>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3
Length = 520
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 56 EMEDYASLP-KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
++E LP KRKQRR RTTFT+ QLEELEKAF RTHYPD++T
Sbjct: 204 DVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYT 246
>sp|P47239|PAX7_MOUSE Paired box protein Pax-7 OS=Mus musculus GN=Pax7 PE=2 SV=2
Length = 503
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 56 EMEDYASLP-KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
++E LP KRKQRR RTTFT+ QLEELEKAF RTHYPD++T
Sbjct: 202 DVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYT 244
>sp|O42250|VSX1_DANRE Visual system homeobox 1 OS=Danio rerio GN=vsx1 PE=1 SV=2
Length = 344
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 11/84 (13%)
Query: 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124
KRK+RR+RT FTS QLEELEKAF+ HYPDV+ + L MK +L ++R +Q +
Sbjct: 148 KRKKRRHRTVFTSHQLEELEKAFNEAHYPDVYA--------REMLAMKTELPEDR-IQVW 198
Query: 125 VAY--GTGRKKDLVYRRIEVEIKF 146
RK++ + R V ++
Sbjct: 199 FQNRRAKWRKREKCWGRSSVMAEY 222
>sp|O14813|PHX2A_HUMAN Paired mesoderm homeobox protein 2A OS=Homo sapiens GN=PHOX2A PE=1
SV=2
Length = 284
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 26/101 (25%)
Query: 41 GVPSSGRGEEDVSEGEMEDYASLP-----------------KRKQRRYRTTFTSFQLEEL 83
G P G + + G + D+ P KRKQRR RTTFTS QL+EL
Sbjct: 46 GPPCPALGSSNCALGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKEL 105
Query: 84 EKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124
E+ F+ THYPD++T L +K+DL + R VQ +
Sbjct: 106 ERVFAETHYPDIYTREE--------LALKIDLTEAR-VQVW 137
>sp|Q9GMA3|VSX1_BOVIN Visual system homeobox 1 OS=Bos taurus GN=VSX1 PE=2 SV=1
Length = 365
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124
KRK+RR+RT FT+ QLEELEKAFS HYPDV+ + L MK +L ++R +Q +
Sbjct: 161 KRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYA--------REMLAMKTELPEDR-IQVW 211
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A OS=Mus musculus GN=Phox2a PE=2
SV=1
Length = 280
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 26/102 (25%)
Query: 40 MGVPSSGRGEEDVSEGEMEDYASLP-----------------KRKQRRYRTTFTSFQLEE 82
G P G + + G + D+ P KRKQRR RTTFTS QL+E
Sbjct: 45 AGPPCPALGSSNCALGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKE 104
Query: 83 LEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124
LE+ F+ THYPD++T L +K+DL + R VQ +
Sbjct: 105 LERVFAETHYPDIYTREE--------LALKIDLTEAR-VQVW 137
>sp|P23760|PAX3_HUMAN Paired box protein Pax-3 OS=Homo sapiens GN=PAX3 PE=1 SV=2
Length = 479
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 40/60 (66%), Gaps = 7/60 (11%)
Query: 39 RMGVPSSGRGEEDVSEGEMEDYASLP-KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
R P S G + SE + LP KRKQRR RTTFT+ QLEELE+AF RTHYPD++T
Sbjct: 195 RASAPQSDEGSDIDSEPD------LPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYT 248
>sp|Q0IH87|PAX3B_XENLA Paired box protein Pax-3-B OS=Xenopus laevis GN=pax3-b PE=2 SV=2
Length = 483
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 4/60 (6%)
Query: 39 RMGVPSSGRGEEDVSEGEMEDYASLP-KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
R P+S EE +++ LP KRKQRR RTTFT+ QLEELE+AF RTHYPD++T
Sbjct: 192 RERAPASPESEEG---SDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYT 248
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A OS=Rattus norvegicus GN=Phox2a
PE=2 SV=1
Length = 281
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 26/102 (25%)
Query: 40 MGVPSSGRGEEDVSEGEMEDYASLP-----------------KRKQRRYRTTFTSFQLEE 82
G P G + + G + D+ P KRKQRR RTTFTS QL+E
Sbjct: 45 AGPPCPALGSSNCALGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKE 104
Query: 83 LEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124
LE+ F+ THYPD++T + L +K+DL + R VQ +
Sbjct: 105 LERVFAETHYPDIYT--------REELALKIDLTEAR-VQVW 137
>sp|P24610|PAX3_MOUSE Paired box protein Pax-3 OS=Mus musculus GN=Pax3 PE=1 SV=2
Length = 479
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 40/60 (66%), Gaps = 7/60 (11%)
Query: 39 RMGVPSSGRGEEDVSEGEMEDYASLP-KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
R P S G + SE + LP KRKQRR RTTFT+ QLEELE+AF RTHYPD++T
Sbjct: 195 RASAPQSDEGSDIDSEPD------LPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYT 248
>sp|Q28DP6|PAX3_XENTR Paired box protein Pax-3 OS=Xenopus tropicalis GN=pax3 PE=2 SV=2
Length = 461
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 4/60 (6%)
Query: 39 RMGVPSSGRGEEDVSEGEMEDYASLP-KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
R P+S EE +++ LP KRKQRR RTTFT+ QLEELE+AF RTHYPD++T
Sbjct: 169 RERAPASPESEEG---SDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYT 225
>sp|P09083|GSBN_DROME Protein gooseberry-neuro OS=Drosophila melanogaster GN=gsb-n PE=1
SV=2
Length = 449
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 49 EEDVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
+ D+S+ E E L KRKQRR RTTFT+ QLE LE+AFSRT YPDV+T
Sbjct: 164 DSDISDTESEPGIPL-KRKQRRSRTTFTAEQLEALERAFSRTQYPDVYT 211
>sp|P06601|PRD_DROME Segmentation protein paired OS=Drosophila melanogaster GN=prd PE=1
SV=1
Length = 613
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 17 SRTGSYSHHSAEDSPSELSDLNRMGVPSSGRGEEDVSEGEMEDYASLPKRKQRRYRTTFT 76
S +GS + + S S SD++ + +ED+S+ E E +L KRKQRR RTTF+
Sbjct: 163 SASGSPAGDGTKASSSCGSDVSGGHHNNGKPSDEDISDCESEPGIAL-KRKQRRCRTTFS 221
Query: 77 SFQLEELEKAFSRTHYPDVFT 97
+ QL+ELE+AF RT YPD++T
Sbjct: 222 ASQLDELERAFERTQYPDIYT 242
>sp|Q645N4|PAX3A_XENLA Paired box protein Pax-3-A OS=Xenopus laevis GN=pax3-a PE=2 SV=1
Length = 484
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/33 (78%), Positives = 30/33 (90%)
Query: 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
KRKQRR RTTFT+ QLEELE+AF RTHYPD++T
Sbjct: 217 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYT 249
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
Length = 325
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 11/90 (12%)
Query: 53 SEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMK 112
S+ ++ D PK+K RR RTTFT++QL ELE+AF ++HYPDV++ + L MK
Sbjct: 115 SDNKLSDDEQQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYS--------REELAMK 166
Query: 113 LDLVKNRPVQTYVAYGTGRKKDLVYRRIEV 142
++L + V+ V + R K ++EV
Sbjct: 167 VNLPE---VRVQVWFQNRRAKWRRQEKLEV 193
>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-a PE=2 SV=2
Length = 322
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 11/90 (12%)
Query: 53 SEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMK 112
S+ ++ D PK+K RR RTTFT++QL ELE+AF ++HYPDV++ + L MK
Sbjct: 115 SDNKLSDDEQQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYS--------REELAMK 166
Query: 113 LDLVKNRPVQTYVAYGTGRKKDLVYRRIEV 142
++L + V+ V + R K ++EV
Sbjct: 167 VNLPE---VRVQVWFQNRRAKWRRQEKLEV 193
>sp|Q9NZR4|VSX1_HUMAN Visual system homeobox 1 OS=Homo sapiens GN=VSX1 PE=1 SV=2
Length = 365
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 9/69 (13%)
Query: 56 EMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDL 115
+++ +L KRK+RR+RT FT+ QLEELEKAFS HYPDV+ + L +K +L
Sbjct: 152 DLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYA--------REMLAVKTEL 203
Query: 116 VKNRPVQTY 124
++R +Q +
Sbjct: 204 PEDR-IQVW 211
>sp|Q26602|SMOX3_SCHMA Homeobox protein SMOX-3 (Fragment) OS=Schistosoma mansoni GN=SMOX-3
PE=2 SV=1
Length = 288
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124
KRKQRR RTTFTS QL+ELE+AF THYPD++T L +++DL + R VQ +
Sbjct: 1 KRKQRRIRTTFTSLQLKELERAFQETHYPDIYTRED--------LALRIDLTEAR-VQVW 51
>sp|Q9IAL2|VSX1_CHICK Visual system homeobox 1 OS=Gallus gallus GN=VSX1 PE=2 SV=1
Length = 350
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 13/98 (13%)
Query: 51 DVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLL 110
D SE +M AS KRK+RR+RT FT+ QLEELEKAF+ HYPDV+ + L
Sbjct: 142 DASELKMP--ASQIKRKKRRHRTVFTAHQLEELEKAFNEAHYPDVYA--------REMLA 191
Query: 111 MKLDLVKNRPVQTYVA--YGTGRKKDLVYRRIEVEIKF 146
+K +L ++R +Q + RK++ + R V ++
Sbjct: 192 VKTELPEDR-IQVWFQNRRAKWRKREKCWGRSSVMAEY 228
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124
K K+RR RTTFTS+QLEELEK F +THYPDV+ + L M+ DL + R VQ +
Sbjct: 197 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYA--------REQLAMRTDLTEAR-VQVW 247
>sp|O35690|PHX2B_MOUSE Paired mesoderm homeobox protein 2B OS=Mus musculus GN=Phox2b PE=1
SV=1
Length = 314
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124
KRKQRR RTTFTS QL+ELE+ F+ THYPD++T + L +K+DL + R VQ +
Sbjct: 95 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYT--------REELALKIDLTEAR-VQVW 145
>sp|Q99453|PHX2B_HUMAN Paired mesoderm homeobox protein 2B OS=Homo sapiens GN=PHOX2B PE=1
SV=2
Length = 314
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124
KRKQRR RTTFTS QL+ELE+ F+ THYPD++T + L +K+DL + R VQ +
Sbjct: 95 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYT--------REELALKIDLTEAR-VQVW 145
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124
K K+RR RTTFTS+QLEELEK F +THYPDV+ + L M+ DL + R VQ +
Sbjct: 199 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYA--------REQLAMRTDLTEAR-VQVW 249
>sp|O77215|UNC4_DROME Homeobox protein unc-4 OS=Drosophila melanogaster GN=unc-4 PE=2
SV=1
Length = 428
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 10/79 (12%)
Query: 41 GVPSSGRGEEDVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTG 100
G PS G E+ G+ +D +S KR RR RT F S+QLEELE+AFS +HYPD+F
Sbjct: 58 GPPSEGSNEDGGFPGDGDDDSSAAKR--RRSRTNFNSWQLEELERAFSASHYPDIF---- 111
Query: 101 SIAVFKPFLLMKLDLVKNR 119
+ L M+LDL ++R
Sbjct: 112 ----MREALAMRLDLKESR 126
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124
K K+RR RTTFTS+QLEELEK F +THYPDV+ + L M+ DL + R VQ +
Sbjct: 211 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYA--------REQLAMRTDLTEAR-VQVW 261
>sp|O42358|RX3_DANRE Retinal homeobox protein Rx3 OS=Danio rerio GN=rx3 PE=2 SV=1
Length = 292
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 51 DVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
D G++ D + PK+K RR RTTFT+FQL ELE+AF ++HYPDV++
Sbjct: 90 DADGGKLSDDEN-PKKKHRRNRTTFTTFQLHELERAFEKSHYPDVYS 135
>sp|A6NJT0|UNC4_HUMAN Homeobox protein unc-4 homolog OS=Homo sapiens GN=UNCX PE=2 SV=1
Length = 531
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 8/56 (14%)
Query: 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNR 119
P K+RR RT FT +QLEELEKAF+ +HYPDVF + L ++LDLV++R
Sbjct: 101 PGCKRRRTRTNFTGWQLEELEKAFNESHYPDVF--------MREALALRLDLVESR 148
>sp|Q50D79|UNC4_DANRE Homeobox protein unc-4 homolog OS=Danio rerio GN=uncx PE=2 SV=2
Length = 470
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 9/61 (14%)
Query: 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQT 123
P K+RR RT FT +QLEELEKA + +HYPDVF + L ++LDLV++R VQ
Sbjct: 97 PGCKRRRTRTNFTGWQLEELEKASNESHYPDVF--------MREALALRLDLVESR-VQV 147
Query: 124 Y 124
+
Sbjct: 148 W 148
>sp|O08934|UNC4_MOUSE Homeobox protein unc-4 homolog OS=Mus musculus GN=Uncx PE=2 SV=2
Length = 530
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 8/56 (14%)
Query: 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNR 119
P K+RR RT FT +QLEELEKAF+ +HYPDVF + L ++LDLV++R
Sbjct: 105 PGCKRRRTRTNFTGWQLEELEKAFNESHYPDVF--------MREALALRLDLVESR 152
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 20/91 (21%)
Query: 51 DVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLL 110
D ++GE PK+K RR RTTFT++QL ELE+AF ++HYPDV++ + L
Sbjct: 126 DSADGEQ------PKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYS--------REELA 171
Query: 111 MKLDLVKNRPVQTYVAYGTGRKKDLVYRRIE 141
MK++L + V+ V + R K +RR E
Sbjct: 172 MKVNLPE---VRVQVWFQNRRAK---WRRQE 196
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 36 DLNRMGVPSSGRGEEDVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDV 95
DLN+ G S+ E +D + K+K RR RTTFT++QL ELE+AF ++HYPDV
Sbjct: 497 DLNQTNSSEQGEKITSGSDDEGQD-DNCAKKKHRRNRTTFTTYQLHELERAFEKSHYPDV 555
Query: 96 FT 97
++
Sbjct: 556 YS 557
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 15/91 (16%)
Query: 51 DVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLL 110
D +G+ D PK+K RR RTTFT++QL ELE+AF ++HYPDV++ L
Sbjct: 106 DGGDGKPSDEEQ-PKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSRE--------ELA 156
Query: 111 MKLDLVKNRPVQTYVAYGTGRKKDLVYRRIE 141
MK++L + R VQ + + + +RR E
Sbjct: 157 MKVNLPEVR-VQVWF-----QNRRAKWRRQE 181
>sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx OS=Homo sapiens GN=RAX PE=1 SV=2
Length = 346
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 36/50 (72%), Gaps = 6/50 (12%)
Query: 48 GEEDVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
GE +SE E PK+K RR RTTFT++QL ELE+AF ++HYPDV++
Sbjct: 122 GEAKLSEEEQ------PKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYS 165
>sp|P97830|UNC4_RAT Homeobox protein unc-4 homolog OS=Rattus norvegicus GN=Uncx PE=2
SV=1
Length = 530
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 8/56 (14%)
Query: 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNR 119
P K+RR RT FT +QLEELEKAF+ +HYPDVF + L ++LDLV++R
Sbjct: 105 PGCKRRRTRTNFTGWQLEELEKAFNESHYPDVF--------MREALAVRLDLVESR 152
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
Length = 228
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 19/106 (17%)
Query: 36 DLNRMGVPSSGRGEEDVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDV 95
DL + P G + E + PK+K RR RTTFT++QL ELE+AF ++HYPDV
Sbjct: 9 DLGELRKPGDSEGTPPAAAEEEQ-----PKKKHRRNRTTFTTYQLHELERAFEKSHYPDV 63
Query: 96 FTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGTGRKKDLVYRRIE 141
++ L MK++L + V+ V + R K +RR E
Sbjct: 64 YSREE--------LAMKVNLPE---VRVQVWFQNRRAK---WRRQE 95
>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
Length = 327
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 14/78 (17%)
Query: 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQT 123
PK+K RR RTTFT++QL ELE+AF ++HYPDV++ + L MK++L + V+
Sbjct: 131 PKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYS--------REELAMKVNLPE---VRV 179
Query: 124 YVAYGTGRKKDLVYRRIE 141
V + R K +RR E
Sbjct: 180 QVWFQNRRAK---WRRQE 194
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 14/78 (17%)
Query: 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQT 123
PK+K RR RTTFT++QL ELE+AF ++HYPDV++ + L MK++L + V+
Sbjct: 138 PKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYS--------REELAMKVNLPE---VRV 186
Query: 124 YVAYGTGRKKDLVYRRIE 141
V + R K +RR E
Sbjct: 187 QVWFQNRRAK---WRRQE 201
>sp|Q91V10|VSX1_MOUSE Visual system homeobox 1 OS=Mus musculus GN=Vsx1 PE=2 SV=1
Length = 363
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 9/62 (14%)
Query: 63 LPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQ 122
L KRK+RR+RT FT+ QLEELEKAF HYPDV+ + L K +L ++R +Q
Sbjct: 166 LGKRKKRRHRTVFTAHQLEELEKAFGEAHYPDVYA--------REMLAAKTELPEDR-IQ 216
Query: 123 TY 124
+
Sbjct: 217 VW 218
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 30/34 (88%)
Query: 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
PK+K RR RTTFT++QL ELE+AF ++HYPDV++
Sbjct: 132 PKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYS 165
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 30/34 (88%)
Query: 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
PK+K RR RTTFT++QL ELE+AF ++HYPDV++
Sbjct: 133 PKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYS 166
>sp|P09082|GSB_DROME Protein gooseberry OS=Drosophila melanogaster GN=gsb PE=2 SV=1
Length = 427
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 48 GEEDVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
G ED SE + E L KRKQRR RTTF++ Q++ LE+ F+RT YPDV+T
Sbjct: 166 GSEDESEDDAEPSVQL-KRKQRRSRTTFSNDQIDALERIFARTQYPDVYT 214
>sp|Q0P031|VSX1_XENLA Visual system homeobox 1 OS=Xenopus laevis GN=vsx1 PE=2 SV=1
Length = 344
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 11/84 (13%)
Query: 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124
KRK+RR+RT FT+ QL+ELEK+F+ HYPDV+ + L +K +L ++R +Q +
Sbjct: 147 KRKKRRHRTVFTAHQLDELEKSFNEAHYPDVYA--------REMLALKTELPEDR-IQVW 197
Query: 125 VAY--GTGRKKDLVYRRIEVEIKF 146
RK++ + R V ++
Sbjct: 198 FQNRRAKWRKREKCWGRSSVMAEY 221
>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=2
SV=1
Length = 263
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124
+RKQRR RTTFT QLE LE F++THYPDVFT + L MK++L + R VQ +
Sbjct: 30 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFT--------REELAMKINLTEAR-VQVW 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,976,016
Number of Sequences: 539616
Number of extensions: 2442127
Number of successful extensions: 6689
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 6352
Number of HSP's gapped (non-prelim): 363
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)