Query psy3734
Match_columns 158
No_of_seqs 150 out of 1498
Neff 7.3
Searched_HMMs 46136
Date Sat Aug 17 00:11:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0484|consensus 99.8 8.3E-23 1.8E-27 141.7 0.1 68 64-140 13-81 (125)
2 KOG0842|consensus 99.8 8.3E-21 1.8E-25 155.0 7.2 76 64-148 149-225 (307)
3 KOG0488|consensus 99.8 1.1E-20 2.4E-25 155.7 5.4 67 64-139 168-235 (309)
4 KOG0850|consensus 99.8 4E-20 8.8E-25 144.3 6.4 77 64-149 118-195 (245)
5 KOG0485|consensus 99.8 4.8E-20 1E-24 142.9 5.3 64 65-137 101-165 (268)
6 KOG0489|consensus 99.8 1.7E-20 3.7E-25 151.6 1.1 67 66-141 157-224 (261)
7 KOG0494|consensus 99.7 1.4E-18 3.1E-23 137.9 4.6 72 65-145 137-210 (332)
8 KOG0843|consensus 99.7 1E-18 2.2E-23 132.0 3.5 62 66-136 100-162 (197)
9 KOG0487|consensus 99.7 4.4E-18 9.6E-23 139.1 6.1 69 63-140 230-299 (308)
10 KOG0492|consensus 99.7 3.9E-18 8.5E-23 131.5 4.5 67 67-142 143-209 (246)
11 KOG2251|consensus 99.7 1.2E-17 2.6E-22 129.9 3.5 66 64-138 33-99 (228)
12 KOG0486|consensus 99.7 7.4E-17 1.6E-21 131.0 4.9 73 65-146 109-182 (351)
13 KOG0844|consensus 99.6 7.1E-17 1.5E-21 130.8 3.0 59 67-134 180-239 (408)
14 KOG0848|consensus 99.6 4.7E-16 1E-20 124.0 1.9 65 67-140 198-263 (317)
15 TIGR01565 homeo_ZF_HD homeobox 99.5 1.4E-14 2.9E-19 91.7 3.7 52 69-129 2-57 (58)
16 KOG0491|consensus 99.5 2.7E-15 5.9E-20 112.1 -1.8 64 67-139 99-163 (194)
17 KOG0493|consensus 99.5 9.8E-15 2.1E-19 116.3 1.2 57 69-134 247-304 (342)
18 PF00046 Homeobox: Homeobox do 99.4 1.3E-14 2.8E-19 91.1 0.1 56 69-133 1-57 (57)
19 KOG0847|consensus 99.4 1.8E-14 4E-19 112.2 1.0 62 67-137 166-228 (288)
20 KOG0490|consensus 99.4 7.8E-14 1.7E-18 109.6 3.1 64 64-136 56-120 (235)
21 smart00389 HOX Homeodomain. DN 99.2 3.1E-12 6.8E-17 79.6 1.8 52 70-130 2-53 (56)
22 cd00086 homeodomain Homeodomai 99.2 9E-12 1.9E-16 78.0 2.0 52 70-130 2-53 (59)
23 KOG0849|consensus 99.2 1E-11 2.2E-16 104.5 2.7 65 63-136 171-236 (354)
24 KOG0483|consensus 99.1 1.4E-11 3.1E-16 95.7 1.7 58 74-140 56-114 (198)
25 COG5576 Homeodomain-containing 99.1 5.5E-11 1.2E-15 89.4 4.6 67 67-142 50-116 (156)
26 KOG4577|consensus 99.1 3E-11 6.6E-16 97.7 3.0 60 68-136 167-226 (383)
27 KOG3802|consensus 98.8 2.4E-09 5.3E-14 90.0 3.5 61 67-136 293-353 (398)
28 KOG1168|consensus 98.3 3.1E-07 6.6E-12 74.7 2.8 59 67-134 308-367 (385)
29 KOG0490|consensus 97.8 2E-05 4.3E-10 61.7 3.5 64 64-136 149-213 (235)
30 KOG2252|consensus 97.0 0.00029 6.4E-09 61.8 1.8 56 67-131 419-474 (558)
31 PF05920 Homeobox_KN: Homeobox 96.9 0.00015 3.1E-09 42.5 -0.7 33 89-130 7-39 (40)
32 KOG0775|consensus 96.9 0.0006 1.3E-08 55.3 2.4 50 75-133 183-232 (304)
33 KOG0774|consensus 96.5 0.0017 3.6E-08 52.6 2.5 65 68-141 188-256 (334)
34 KOG1146|consensus 95.3 0.018 3.9E-07 55.4 3.8 60 68-136 903-963 (1406)
35 KOG0487|consensus 91.6 0.039 8.5E-07 45.8 -0.7 63 63-131 233-298 (308)
36 KOG0773|consensus 86.0 1.8 4E-05 36.1 5.4 57 68-124 239-298 (342)
37 PF11569 Homez: Homeodomain le 84.0 0.22 4.8E-06 31.1 -0.7 39 80-127 10-48 (56)
38 KOG0842|consensus 80.4 0.48 1E-05 39.4 -0.3 18 109-126 194-211 (307)
39 KOG0843|consensus 79.3 0.52 1.1E-05 36.4 -0.4 18 107-124 141-158 (197)
40 KOG0848|consensus 78.3 0.65 1.4E-05 38.0 -0.1 19 109-127 240-258 (317)
41 KOG0485|consensus 76.0 2.7 5.9E-05 33.5 2.8 58 61-124 100-160 (268)
42 KOG0489|consensus 75.3 0.37 7.9E-06 39.1 -2.3 21 109-129 200-220 (261)
43 KOG2251|consensus 73.0 1.1 2.3E-05 35.7 -0.1 16 111-126 80-95 (228)
44 KOG3623|consensus 65.1 2.9 6.3E-05 38.8 0.9 48 75-132 564-611 (1007)
45 PTZ00352 60S ribosomal protein 64.5 5.9 0.00013 31.2 2.4 31 120-150 19-50 (212)
46 KOG0850|consensus 62.9 1.7 3.8E-05 34.7 -0.8 55 60-126 117-180 (245)
47 KOG3862|consensus 62.1 7 0.00015 32.2 2.5 26 73-98 224-249 (327)
48 KOG0488|consensus 60.4 2 4.4E-05 35.8 -0.9 58 63-126 170-230 (309)
49 KOG0492|consensus 58.4 2.7 5.8E-05 33.3 -0.5 16 109-124 185-200 (246)
50 PTZ00192 60S ribosomal protein 47.3 20 0.00044 28.4 2.8 31 120-150 26-57 (218)
51 PF04967 HTH_10: HTH DNA bindi 46.4 23 0.00049 21.7 2.4 36 75-110 1-38 (53)
52 PF08880 QLQ: QLQ; InterPro: 35.0 34 0.00074 19.3 1.8 13 74-86 2-14 (37)
53 PHA02535 P terminase ATPase su 28.3 82 0.0018 28.7 3.9 25 69-93 117-141 (581)
54 COG3413 Predicted DNA binding 23.8 70 0.0015 24.7 2.4 37 74-110 155-193 (215)
55 PF04218 CENP-B_N: CENP-B N-te 23.2 39 0.00084 20.4 0.7 47 69-129 1-47 (53)
No 1
>KOG0484|consensus
Probab=99.85 E-value=8.3e-23 Score=141.74 Aligned_cols=68 Identities=44% Similarity=0.607 Sum_probs=62.4
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHHHhH
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVYRRI 140 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~~~~ 140 (158)
-.+|+||.||.||..||.+||+.|...|||+++.|++|| .+++|++. +|+||||||| |.+|+++....
T Consensus 13 ekrKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA--------~kidLTEA-RVQVWFQNRRAKfRKQEr~a~~ 81 (125)
T KOG0484|consen 13 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIA--------LKIDLTEA-RVQVWFQNRRAKFRKQERAAIA 81 (125)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHH--------HhhhhhHH-HHHHHHHhhHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999 78888888 9999999999 99999875543
No 2
>KOG0842|consensus
Probab=99.83 E-value=8.3e-21 Score=155.04 Aligned_cols=76 Identities=22% Similarity=0.274 Sum_probs=64.3
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHHHhHhh
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVYRRIEV 142 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~~~~~~ 142 (158)
..+++||.|..||..|..|||+.|..++|++..+|++|| ..|.|+.+ |||||||||| |-||+.+-..++.
T Consensus 149 ~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA--------~~LrLT~T-QVKIWFQNrRYK~KR~~~dk~~~~ 219 (307)
T KOG0842|consen 149 GKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLA--------SSLRLTPT-QVKIWFQNRRYKTKRQQKDKALEA 219 (307)
T ss_pred ccccccccccccchhHHHHHHHHHHhhhccccHhHHHHH--------HhcCCCch-heeeeeecchhhhhhhhhhhhhhc
Confidence 466777889999999999999999999999999999999 66667777 9999999999 8888777776666
Q ss_pred hhccCC
Q psy3734 143 EIKFIP 148 (158)
Q Consensus 143 ~~~~~~ 148 (158)
......
T Consensus 220 ~~~~~~ 225 (307)
T KOG0842|consen 220 LLLASS 225 (307)
T ss_pred ccCCCC
Confidence 555443
No 3
>KOG0488|consensus
Probab=99.82 E-value=1.1e-20 Score=155.65 Aligned_cols=67 Identities=28% Similarity=0.366 Sum_probs=60.8
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHHHh
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVYRR 139 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~~~ 139 (158)
.+||.|+.||+||..||.+||+.|++++|+...+|.+|| ..|+|+.. |||+|||||| ||||+...++
T Consensus 168 ~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA--------~~LgLTda-QVKtWfQNRRtKWKrq~a~g~ 235 (309)
T KOG0488|consen 168 TPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELA--------ASLGLTDA-QVKTWFQNRRTKWKRQTAEGG 235 (309)
T ss_pred CCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHH--------HHcCCchh-hHHHHHhhhhHHHHHHHHhhh
Confidence 458888999999999999999999999999999999999 66666767 9999999999 9999998743
No 4
>KOG0850|consensus
Probab=99.81 E-value=4e-20 Score=144.33 Aligned_cols=77 Identities=23% Similarity=0.227 Sum_probs=66.7
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHHHhHhh
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVYRRIEV 142 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~~~~~~ 142 (158)
+.||.|+.||.|+..||..|.+.|++++|+...+|.+|| ..|+|+++ |||||||||| |.||-++.+....
T Consensus 118 k~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLA--------AsLGLTQT-QVKIWFQNrRSK~KKl~k~g~~~~ 188 (245)
T KOG0850|consen 118 KGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELA--------ASLGLTQT-QVKIWFQNRRSKFKKLKKQGSGPV 188 (245)
T ss_pred CcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHH--------HHhCCchh-HhhhhhhhhHHHHHHHHhcCCCcc
Confidence 677889999999999999999999999999999999999 55667777 9999999999 9999888777665
Q ss_pred hhccCCC
Q psy3734 143 EIKFIPN 149 (158)
Q Consensus 143 ~~~~~~~ 149 (158)
+.++.-.
T Consensus 189 e~~p~~~ 195 (245)
T KOG0850|consen 189 EGDPSAS 195 (245)
T ss_pred ccCcccC
Confidence 5555444
No 5
>KOG0485|consensus
Probab=99.80 E-value=4.8e-20 Score=142.94 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=57.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHH
Q psy3734 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVY 137 (158)
Q Consensus 65 ~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~ 137 (158)
.-++++.||+|+..|+..||..|+..+|++..+|..|| ..|.|+++ |||||||||| ||||+...
T Consensus 101 ~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA--------~sLqLTET-QVKIWFQNRRnKwKRq~aa 165 (268)
T KOG0485|consen 101 DDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLA--------ASLQLTET-QVKIWFQNRRNKWKRQYAA 165 (268)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHH--------Hhhhhhhh-hhhhhhhhhhHHHHHHHhh
Confidence 34567799999999999999999999999999999999 66667777 9999999999 99998753
No 6
>KOG0489|consensus
Probab=99.79 E-value=1.7e-20 Score=151.60 Aligned_cols=67 Identities=27% Similarity=0.333 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHHHhHh
Q psy3734 66 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVYRRIE 141 (158)
Q Consensus 66 rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~~~~~ 141 (158)
.+.||.||.||..|+.+||++|+.++|++...|.++| ..|+|++. |||||||||| ||||..+.....
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA--------~~L~LtEr-QIKIWFQNRRMK~Kk~~k~~~~~ 224 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIA--------HALNLTER-QIKIWFQNRRMKWKKENKAKSSQ 224 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHH--------hhcchhHH-HHHHHHHHHHHHHHHhhcccccc
Confidence 3578999999999999999999999999999999999 44555555 9999999999 999988766554
No 7
>KOG0494|consensus
Probab=99.74 E-value=1.4e-18 Score=137.85 Aligned_cols=72 Identities=38% Similarity=0.534 Sum_probs=60.6
Q ss_pred cCCCCC-CCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHHHhHhh
Q psy3734 65 KRKQRR-YRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVYRRIEV 142 (158)
Q Consensus 65 ~rk~rR-~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~~~~~~ 142 (158)
++++|| .||.||..|+++||..|...||||...|+-|| .++.+.+. ||+||||||| ||||+++.-.-..
T Consensus 137 kk~kRRh~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la--------~ktelpED-RIqVWfQNRRAKWRk~Ek~wg~sT 207 (332)
T KOG0494|consen 137 KKKKRRHFRTIFTSYQLEELEKAFKEAHYPDVYAREMLA--------DKTELPED-RIQVWFQNRRAKWRKTEKRWGGST 207 (332)
T ss_pred cccccccccchhhHHHHHHHHHHHhhccCccHHHHHHHh--------hhccCchh-hhhHHhhhhhHHhhhhhhhcCcch
Confidence 343444 59999999999999999999999999999999 67777777 9999999999 9999997655444
Q ss_pred hhc
Q psy3734 143 EIK 145 (158)
Q Consensus 143 ~~~ 145 (158)
.+.
T Consensus 208 ~ma 210 (332)
T KOG0494|consen 208 IMA 210 (332)
T ss_pred hhh
Confidence 443
No 8
>KOG0843|consensus
Probab=99.74 E-value=1e-18 Score=132.04 Aligned_cols=62 Identities=26% Similarity=0.281 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 66 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 66 rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
.+.+|.||+||.+||..||.+|+.++|....+|++|| +.|+|.++ |||||||||| |.||...
T Consensus 100 ~~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA--------~~L~Lset-QVkvWFQNRRtk~kr~~~ 162 (197)
T KOG0843|consen 100 MRPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLA--------QSLSLSET-QVKVWFQNRRTKHKRMQQ 162 (197)
T ss_pred cCCCccccccCHHHHHHHHHHHhcCCeeechHHHHHH--------HHcCCChh-HhhhhhhhhhHHHHHHHH
Confidence 3788999999999999999999999999999999999 66666677 9999999999 5444433
No 9
>KOG0487|consensus
Probab=99.73 E-value=4.4e-18 Score=139.12 Aligned_cols=69 Identities=25% Similarity=0.231 Sum_probs=56.9
Q ss_pred CCcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHHHhH
Q psy3734 63 LPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVYRRI 140 (158)
Q Consensus 63 ~~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~~~~ 140 (158)
...++.|++|..||..|+.|||++|-.|.|++...|.+|+ ..|+|++- |||||||||| |.||-.+...+
T Consensus 230 ~~~~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElS--------r~lNLTeR-QVKIWFQNRRMK~KK~~re~r~ 299 (308)
T KOG0487|consen 230 SSARRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELS--------RTLNLTER-QVKIWFQNRRMKEKKVNRENRL 299 (308)
T ss_pred ccccccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHH--------Hhcccchh-heeeeehhhhhHHhhhhhhhhc
Confidence 3457788899999999999999999999999999999999 55666655 9999999999 55555443444
No 10
>KOG0492|consensus
Probab=99.72 E-value=3.9e-18 Score=131.51 Aligned_cols=67 Identities=25% Similarity=0.353 Sum_probs=58.3
Q ss_pred CCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchhhHHHHHHHHhHhh
Q psy3734 67 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGTGRKKDLVYRRIEV 142 (158)
Q Consensus 67 k~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR~~~k~~~~~~~~~ 142 (158)
-.|++||.||.+||..||+.|...+|+++.+|.+++ ..|.|+++ ||||||||||.+.||+....+|.
T Consensus 143 ~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefS--------sSL~LTeT-qVKIWFQNRRAKaKRlQeae~Ek 209 (246)
T KOG0492|consen 143 PNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFS--------SSLELTET-QVKIWFQNRRAKAKRLQEAELEK 209 (246)
T ss_pred CCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhh--------hhhhhhhh-heehhhhhhhHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999988 66778888 99999999997777776666653
No 11
>KOG2251|consensus
Probab=99.69 E-value=1.2e-17 Score=129.90 Aligned_cols=66 Identities=38% Similarity=0.485 Sum_probs=58.3
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHHH
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVYR 138 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~~ 138 (158)
..||+||.||.|+..|+++||..|.+.+|||+..|++||.+|+ |.+. ||||||.||| |++++....
T Consensus 33 ~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlkln--------LpeS-rVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 33 GPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLN--------LPES-RVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred cchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhC--------Cchh-hhhhhhccccchhhHhhhhh
Confidence 6789999999999999999999999999999999999995555 4455 7999999999 888877654
No 12
>KOG0486|consensus
Probab=99.66 E-value=7.4e-17 Score=130.99 Aligned_cols=73 Identities=33% Similarity=0.379 Sum_probs=65.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHHHhHhhh
Q psy3734 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVYRRIEVE 143 (158)
Q Consensus 65 ~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~~~~~~~ 143 (158)
..|+||.||+||.+|+++||..|+++.||+...|+++| ...++++. +|+|||.||| ||+|+++..+.+.+
T Consensus 109 i~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIa--------vwtNlTE~-rvrvwfknrrakwrkrErN~~ae~~ 179 (351)
T KOG0486|consen 109 ISKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIA--------VWTNLTEA-RVRVWFKNRRAKWRKRERNQQAELA 179 (351)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHH--------hhccccch-hhhhhcccchhhhhhhhhhHHHHhh
Confidence 34889999999999999999999999999999999999 88888888 9999999999 99999998885544
Q ss_pred hcc
Q psy3734 144 IKF 146 (158)
Q Consensus 144 ~~~ 146 (158)
..-
T Consensus 180 k~~ 182 (351)
T KOG0486|consen 180 KGG 182 (351)
T ss_pred hcC
Confidence 433
No 13
>KOG0844|consensus
Probab=99.64 E-value=7.1e-17 Score=130.80 Aligned_cols=59 Identities=27% Similarity=0.347 Sum_probs=51.5
Q ss_pred CCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHH
Q psy3734 67 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKD 134 (158)
Q Consensus 67 k~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~ 134 (158)
..||+||.||.+||-.||++|-+..|.+...|.+||++|+|+++ .||||||||| |-||+
T Consensus 180 qmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEt---------TIKVWFQNRRMKDKRQ 239 (408)
T KOG0844|consen 180 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPET---------TIKVWFQNRRMKDKRQ 239 (408)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcc---------eeehhhhhchhhhhhh
Confidence 46889999999999999999999999999999999966665555 7999999999 54444
No 14
>KOG0848|consensus
Probab=99.58 E-value=4.7e-16 Score=124.01 Aligned_cols=65 Identities=25% Similarity=0.385 Sum_probs=54.3
Q ss_pred CCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHHHhH
Q psy3734 67 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVYRRI 140 (158)
Q Consensus 67 k~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~~~~ 140 (158)
-+-++|.+||..|..|||++|..++|+++..+.+|| ..|+|.|. |||||||||| |-||..+...+
T Consensus 198 TkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA--------~~LgLsER-QVKIWFQNRRAKERK~nKKk~~ 263 (317)
T KOG0848|consen 198 TKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELA--------ATLGLSER-QVKIWFQNRRAKERKDNKKKRL 263 (317)
T ss_pred cccceeEEecchhhhhhhhhhccccceeeehhHHHH--------HhhCccHh-hhhHhhhhhhHHHHHHHHHHHH
Confidence 344578899999999999999999999999999999 55666655 9999999999 76666666634
No 15
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.51 E-value=1.4e-14 Score=91.71 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=45.9
Q ss_pred CCCCCCCCHHHHHHHHhccccCCC----CChhhhhhhhhhhccchhhcccccCCCceeeeccchh
Q psy3734 69 RRYRTTFTSFQLEELEKAFSRTHY----PDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT 129 (158)
Q Consensus 69 rR~Rt~ft~~Ql~~Le~~F~~~~y----p~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR 129 (158)
+|.||.||.+|+..||..|+.++| |+..++++||..|+ +.+. +|||||||-+
T Consensus 2 kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lg--------l~~~-vvKVWfqN~k 57 (58)
T TIGR01565 2 KRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIG--------VTRK-VFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhC--------CCHH-HeeeecccCC
Confidence 689999999999999999999999 99999999995555 4444 8999999954
No 16
>KOG0491|consensus
Probab=99.47 E-value=2.7e-15 Score=112.13 Aligned_cols=64 Identities=25% Similarity=0.281 Sum_probs=55.1
Q ss_pred CCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHHHh
Q psy3734 67 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVYRR 139 (158)
Q Consensus 67 k~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~~~ 139 (158)
+.++.||+|+..|+..||+.|+.++|++..+|.+||..|.|+.+ |||.|||||| |-||..+..+
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~---------QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSET---------QVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHH---------HHHHHHHHHHHHHHHHHhccC
Confidence 34668999999999999999999999999999999966665554 8999999999 7777776554
No 17
>KOG0493|consensus
Probab=99.47 E-value=9.8e-15 Score=116.27 Aligned_cols=57 Identities=25% Similarity=0.321 Sum_probs=49.7
Q ss_pred CCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHH
Q psy3734 69 RRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKD 134 (158)
Q Consensus 69 rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~ 134 (158)
+|+||.||.+||..|..+|+.++|+....|.+|| +.|+|.+. ||||||||.| |-||-
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La--------~ELgLNEs-QIKIWFQNKRAKiKKs 304 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELA--------QELGLNES-QIKIWFQNKRAKIKKS 304 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHH--------HHhCcCHH-HhhHHhhhhhhhhhhc
Confidence 5789999999999999999999999999999999 45555555 9999999999 55553
No 18
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.44 E-value=1.3e-14 Score=91.11 Aligned_cols=56 Identities=27% Similarity=0.285 Sum_probs=48.6
Q ss_pred CCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHH
Q psy3734 69 RRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKK 133 (158)
Q Consensus 69 rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k 133 (158)
||.|+.||.+|+..|+..|..++||+..+++.||..++++. . +|++|||||| ++||
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~--------~-~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTE--------R-QVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSH--------H-HHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccc--------c-ccccCHHHhHHHhCc
Confidence 56889999999999999999999999999999996665444 3 8999999999 6554
No 19
>KOG0847|consensus
Probab=99.44 E-value=1.8e-14 Score=112.22 Aligned_cols=62 Identities=21% Similarity=0.334 Sum_probs=55.3
Q ss_pred CCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHH
Q psy3734 67 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVY 137 (158)
Q Consensus 67 k~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~ 137 (158)
+++..|.+|+-.||..||+.|+..+|+-..+|.+|| ..++.++. +||||||||| |||||+..
T Consensus 166 ~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA--------~~lgmteS-qvkVWFQNRRTKWRKkhAa 228 (288)
T KOG0847|consen 166 QRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLA--------QELNMTES-QVKVWFQNRRTKWRKKHAA 228 (288)
T ss_pred cccccCCCccchhhhhhhhhhhhhhcccchhHHHhh--------ccccccHH-HHHHHHhcchhhhhhhhcc
Confidence 445578889999999999999999999999999999 66667777 9999999999 99999873
No 20
>KOG0490|consensus
Probab=99.42 E-value=7.8e-14 Score=109.56 Aligned_cols=64 Identities=28% Similarity=0.262 Sum_probs=57.9
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
...++||.||.|+..|+++||++|+..|||+...|+.|| ..+++.+. +|+||||||| ||+++..
T Consensus 56 ~~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la--------~~~~~~e~-rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 56 FKFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLA--------LLLTGDEF-RVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hhccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHh--------hcCCCCee-eeehhhhhhcHhhhhhhc
Confidence 356788999999999999999999999999999999999 66667777 9999999999 9998874
No 21
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.23 E-value=3.1e-12 Score=79.58 Aligned_cols=52 Identities=33% Similarity=0.372 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchhh
Q psy3734 70 RYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGTG 130 (158)
Q Consensus 70 R~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR~ 130 (158)
+.|+.|+..|+..|+..|..++||+..++..||..++++. . +|+.||+|||.
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~--------~-qV~~WF~nrR~ 53 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSE--------R-QVKVWFQNRRA 53 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCH--------H-HHHHhHHHHhh
Confidence 4678899999999999999999999999999996666443 3 89999999993
No 22
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.18 E-value=9e-12 Score=78.04 Aligned_cols=52 Identities=31% Similarity=0.326 Sum_probs=45.7
Q ss_pred CCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchhh
Q psy3734 70 RYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGTG 130 (158)
Q Consensus 70 R~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR~ 130 (158)
+.|+.|+..|+..||..|..++||+..+...||..++++.. +|+.||+|||.
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~---------qV~~WF~nrR~ 53 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTER---------QVKIWFQNRRA 53 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHH---------HHHHHHHHHHH
Confidence 46778999999999999999999999999999966664443 89999999993
No 23
>KOG0849|consensus
Probab=99.18 E-value=1e-11 Score=104.50 Aligned_cols=65 Identities=29% Similarity=0.366 Sum_probs=57.1
Q ss_pred CCcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 63 LPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 63 ~~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
...++.+|.||.|+..|++.||..|++++||++..|++||.++++ .+. +|+|||+||| +|+|...
T Consensus 171 ~~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l--------~e~-riqvwf~nrra~~rr~~~ 236 (354)
T KOG0849|consen 171 ALQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGL--------PEP-RVQVWFQNRRAKWRRQHR 236 (354)
T ss_pred cccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccC--------Cch-HHHHHHhhhhhhhhhccc
Confidence 356778889999999999999999999999999999999955554 444 8999999999 8999884
No 24
>KOG0483|consensus
Probab=99.14 E-value=1.4e-11 Score=95.68 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHHHhH
Q psy3734 74 TFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVYRRI 140 (158)
Q Consensus 74 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~~~~ 140 (158)
.||.+|+..||..|+...|+....+..||..|+| +.|||+||||||| +||.+.....+
T Consensus 56 Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL---------~pRQVavWFQNRRARwK~kqlE~d~ 114 (198)
T KOG0483|consen 56 RLTSEQVKFLEKSFESEKKLEPERKKKLAKELGL---------QPRQVAVWFQNRRARWKTKQLEKDY 114 (198)
T ss_pred cccHHHHHHhHHhhccccccChHHHHHHHHhhCC---------ChhHHHHHHhhccccccchhhhhhH
Confidence 5899999999999999999999999999966663 3459999999999 99988765544
No 25
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.13 E-value=5.5e-11 Score=89.37 Aligned_cols=67 Identities=21% Similarity=0.230 Sum_probs=51.2
Q ss_pred CCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchhhHHHHHHHHhHhh
Q psy3734 67 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGTGRKKDLVYRRIEV 142 (158)
Q Consensus 67 k~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR~~~k~~~~~~~~~ 142 (158)
..++.|+.-|..|+..|++.|..++||+...|.+|+..++++ .|-|||||||+|...|+...+...+
T Consensus 50 ~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~---------~ksVqIWFQNkR~~~k~~~~~~~~~ 116 (156)
T COG5576 50 PPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMP---------PKSVQIWFQNKRAKEKKKRSGKVEQ 116 (156)
T ss_pred cCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCC---------hhhhhhhhchHHHHHHHhcccchhc
Confidence 345566778999999999999999999999999999555432 2369999999994444444444433
No 26
>KOG4577|consensus
Probab=99.12 E-value=3e-11 Score=97.67 Aligned_cols=60 Identities=28% Similarity=0.338 Sum_probs=51.4
Q ss_pred CCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchhhHHHHHH
Q psy3734 68 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGTGRKKDLV 136 (158)
Q Consensus 68 ~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR~~~k~~~ 136 (158)
.+|+||.+|..||+.|..++...+-|..+.|++|+..++| ++ |-|+|||||||.++||++
T Consensus 167 nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGL------DM---RVVQVWFQNRRAKEKRLK 226 (383)
T KOG4577|consen 167 NKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGL------DM---RVVQVWFQNRRAKEKRLK 226 (383)
T ss_pred cCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCc------ce---eehhhhhhhhhHHHHhhh
Confidence 5789999999999999999999999999999999988873 22 369999999995555554
No 27
>KOG3802|consensus
Probab=98.82 E-value=2.4e-09 Score=89.97 Aligned_cols=61 Identities=23% Similarity=0.269 Sum_probs=51.9
Q ss_pred CCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchhhHHHHHH
Q psy3734 67 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGTGRKKDLV 136 (158)
Q Consensus 67 k~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR~~~k~~~ 136 (158)
|+|++||.+.......||+.|..++-|+..+-..|| ..|++=+. -|+|||.|||.+.||..
T Consensus 293 RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA--------~~L~leKE-VVRVWFCNRRQkeKR~~ 353 (398)
T KOG3802|consen 293 RKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIA--------ESLQLEKE-VVRVWFCNRRQKEKRIT 353 (398)
T ss_pred cccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHH--------HHhccccc-eEEEEeeccccccccCC
Confidence 677899999999999999999999999999999999 44555555 79999999995555554
No 28
>KOG1168|consensus
Probab=98.33 E-value=3.1e-07 Score=74.75 Aligned_cols=59 Identities=25% Similarity=0.281 Sum_probs=51.5
Q ss_pred CCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHH
Q psy3734 67 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKD 134 (158)
Q Consensus 67 k~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~ 134 (158)
.++|+||......-..||..|..++-|+...-..+| -+|+|.+| -|+|||.|.| |.||.
T Consensus 308 ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIA--------ekLDLKKN-VVRVWFCNQRQKQKRm 367 (385)
T KOG1168|consen 308 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIA--------EKLDLKKN-VVRVWFCNQRQKQKRM 367 (385)
T ss_pred ccccccccccCcccccHHHHhccCCCCchhHHHHHH--------Hhhhhhhc-eEEEEeeccHHHHHHh
Confidence 467789999999999999999999999988888888 77888999 9999999999 55553
No 29
>KOG0490|consensus
Probab=97.79 E-value=2e-05 Score=61.73 Aligned_cols=64 Identities=31% Similarity=0.306 Sum_probs=52.2
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
...+.++.||.|+..|+..|+..|...+||+...++.|+..++ +... .+++||||+| +.++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~--------~~~~-~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 149 SNKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETG--------LSER-VIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred CccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcC--------CChh-hhhhhcccHHHHHHhhcc
Confidence 4456788999999999999999999999999999999994444 4444 7999999999 5554433
No 30
>KOG2252|consensus
Probab=97.03 E-value=0.00029 Score=61.84 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=47.4
Q ss_pred CCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchhhH
Q psy3734 67 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGTGR 131 (158)
Q Consensus 67 k~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR~~ 131 (158)
..+++|.+||..|...|...|+.+++|+....+.|+.+|+|.++ .|--||=|-|.+
T Consensus 419 ~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~s---------TV~NfFmNaRRR 474 (558)
T KOG2252|consen 419 QTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELS---------TVINFFMNARRR 474 (558)
T ss_pred cCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHH---------HHHHHHHhhhhh
Confidence 45678999999999999999999999999999999977776555 577788876633
No 31
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=96.93 E-value=0.00015 Score=42.46 Aligned_cols=33 Identities=6% Similarity=-0.030 Sum_probs=24.8
Q ss_pred cCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchhh
Q psy3734 89 RTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGTG 130 (158)
Q Consensus 89 ~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR~ 130 (158)
.++||+..++..||..++++.. ||..||-|.|+
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~---------Qi~~WF~NaRr 39 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRK---------QISNWFINARR 39 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HH---------HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHH---------HHHHHHHHhHc
Confidence 3789999999999977776554 79999999774
No 32
>KOG0775|consensus
Probab=96.90 E-value=0.0006 Score=55.35 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=37.8
Q ss_pred CCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchhhHHH
Q psy3734 75 FTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGTGRKK 133 (158)
Q Consensus 75 ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR~~~k 133 (158)
|-..-...|...|..++||...++.+||.+++|.++ ||--||.|||-+-|
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~t---------QVsNWFKNRRQRDR 232 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTIT---------QVSNWFKNRRQRDR 232 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchh---------hhhhhhhhhhhhhh
Confidence 333344577777899999999999999977776555 78888888884433
No 33
>KOG0774|consensus
Probab=96.53 E-value=0.0017 Score=52.59 Aligned_cols=65 Identities=20% Similarity=0.194 Sum_probs=51.6
Q ss_pred CCCCCCCCCHHHHHHHHhcccc---CCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHHHhHh
Q psy3734 68 QRRYRTTFTSFQLEELEKAFSR---THYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVYRRIE 141 (158)
Q Consensus 68 ~rR~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~~~~~ 141 (158)
.||+|..|+..-.+.|...|.. ++||+..+.++||.+-++..+ ||--||.|.| .++|-...-+-+
T Consensus 188 arRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvs---------QvsnwfgnkrIrykK~~~k~~ee 256 (334)
T KOG0774|consen 188 ARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVS---------QVSNWFGNKRIRYKKNMGKNQEE 256 (334)
T ss_pred HHHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceeh---------hhccccccceeehhhhhhhhhhh
Confidence 3667778999999999999854 799999999999987776555 6888999888 777766544433
No 34
>KOG1146|consensus
Probab=95.30 E-value=0.018 Score=55.42 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=48.8
Q ss_pred CCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 68 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 68 ~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
+|++||.++..||..|...|....||...+-+.|-..+++ ..|.|.|||||-| |-+|...
T Consensus 903 r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~---------~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 903 RRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGL---------PKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccC---------CcchhHHhhhhhhhhhhhhhh
Confidence 5668999999999999999999999988888887754442 3347999999999 6666555
No 35
>KOG0487|consensus
Probab=91.65 E-value=0.039 Score=45.81 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=36.5
Q ss_pred CCcCCCCCCCCCCCHHHHH--HHHhcc-ccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchhhH
Q psy3734 63 LPKRKQRRYRTTFTSFQLE--ELEKAF-SRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGTGR 131 (158)
Q Consensus 63 ~~~rk~rR~Rt~ft~~Ql~--~Le~~F-~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR~~ 131 (158)
...||+|++=|-+-...|+ .|=..| .+.+-.-+....+|. +-++.+||||||+|....||+.+
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLT------eRQVKIWFQNRRMK~KK~~re~r 298 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLT------ERQVKIWFQNRRMKEKKVNRENR 298 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccc------hhheeeeehhhhhHHhhhhhhhh
Confidence 3677788876766555554 222222 111111112222322 44899999999999999997633
No 36
>KOG0773|consensus
Probab=86.01 E-value=1.8 Score=36.06 Aligned_cols=57 Identities=12% Similarity=-0.034 Sum_probs=36.8
Q ss_pred CCCCCCCCCHHHHHHHHhc-cc--cCCCCChhhhhhhhhhhccchhhcccccCCCceeee
Q psy3734 68 QRRYRTTFTSFQLEELEKA-FS--RTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124 (158)
Q Consensus 68 ~rR~Rt~ft~~Ql~~Le~~-F~--~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiW 124 (158)
..|.+..+.......|+.. |+ ..+||.......||.+++++..+.-+||=|.|+++|
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w 298 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLW 298 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccC
Confidence 3444557888888888865 33 247999999889998887666643444444334444
No 37
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=83.98 E-value=0.22 Score=31.13 Aligned_cols=39 Identities=10% Similarity=0.008 Sum_probs=26.0
Q ss_pred HHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccc
Q psy3734 80 LEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAY 127 (158)
Q Consensus 80 l~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQn 127 (158)
+..|+..|...+++....-..|..+.+++.- ||+.||.-
T Consensus 10 ~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~q---------qVr~WFa~ 48 (56)
T PF11569_consen 10 IQPLEDYYLKHKQLQEEDLDELCDKSRMSYQ---------QVRDWFAE 48 (56)
T ss_dssp -HHHHHHHHHT----TTHHHHHHHHTT--HH---------HHHHHHHH
T ss_pred hHHHHHHHHHcCCccHhhHHHHHHHHCCCHH---------HHHHHHHH
Confidence 4669999999999988888888877764433 79999983
No 38
>KOG0842|consensus
Probab=80.41 E-value=0.48 Score=39.45 Aligned_cols=18 Identities=17% Similarity=-0.092 Sum_probs=16.6
Q ss_pred hhhcccccCCCceeeecc
Q psy3734 109 LLMKLDLVKNRPVQTYVA 126 (158)
Q Consensus 109 ~~~~l~~~~~r~vKiWfQ 126 (158)
++++++||||||.|+.-|
T Consensus 194 ~TQVKIWFQNrRYK~KR~ 211 (307)
T KOG0842|consen 194 PTQVKIWFQNRRYKTKRQ 211 (307)
T ss_pred chheeeeeecchhhhhhh
Confidence 789999999999999866
No 39
>KOG0843|consensus
Probab=79.29 E-value=0.52 Score=36.38 Aligned_cols=18 Identities=11% Similarity=-0.169 Sum_probs=15.3
Q ss_pred cchhhcccccCCCceeee
Q psy3734 107 PFLLMKLDLVKNRPVQTY 124 (158)
Q Consensus 107 ~~~~~~l~~~~~r~vKiW 124 (158)
|+++++.+||+|||.|..
T Consensus 141 LsetQVkvWFQNRRtk~k 158 (197)
T KOG0843|consen 141 LSETQVKVWFQNRRTKHK 158 (197)
T ss_pred CChhHhhhhhhhhhHHHH
Confidence 458899999999999864
No 40
>KOG0848|consensus
Probab=78.28 E-value=0.65 Score=38.00 Aligned_cols=19 Identities=11% Similarity=-0.151 Sum_probs=14.9
Q ss_pred hhhcccccCCCceeeeccc
Q psy3734 109 LLMKLDLVKNRPVQTYVAY 127 (158)
Q Consensus 109 ~~~~l~~~~~r~vKiWfQn 127 (158)
+-++.+||+|||.|--.+|
T Consensus 240 ERQVKIWFQNRRAKERK~n 258 (317)
T KOG0848|consen 240 ERQVKIWFQNRRAKERKDN 258 (317)
T ss_pred HhhhhHhhhhhhHHHHHHH
Confidence 4488999999999965553
No 41
>KOG0485|consensus
Probab=75.99 E-value=2.7 Score=33.48 Aligned_cols=58 Identities=17% Similarity=0.017 Sum_probs=37.6
Q ss_pred CCCCcCCCCCCCC---CCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeee
Q psy3734 61 ASLPKRKQRRYRT---TFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTY 124 (158)
Q Consensus 61 ~~~~~rk~rR~Rt---~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiW 124 (158)
.+..+||.|-.=. +|.=+-..+|.+......--......+|. ++++..||||||-|-.
T Consensus 100 g~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLT------ETQVKIWFQNRRnKwK 160 (268)
T KOG0485|consen 100 GDDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLT------ETQVKIWFQNRRNKWK 160 (268)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhh------hhhhhhhhhhhhHHHH
Confidence 3456777765422 23333334677776666555556666777 8899999999887754
No 42
>KOG0489|consensus
Probab=75.30 E-value=0.37 Score=39.12 Aligned_cols=21 Identities=10% Similarity=-0.181 Sum_probs=16.4
Q ss_pred hhhcccccCCCceeeeccchh
Q psy3734 109 LLMKLDLVKNRPVQTYVAYGT 129 (158)
Q Consensus 109 ~~~~l~~~~~r~vKiWfQnrR 129 (158)
+.++++||+|||+|-.-.|..
T Consensus 200 ErQIKIWFQNRRMK~Kk~~k~ 220 (261)
T KOG0489|consen 200 ERQIKIWFQNRRMKWKKENKA 220 (261)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 448899999999997766544
No 43
>KOG2251|consensus
Probab=73.04 E-value=1.1 Score=35.66 Aligned_cols=16 Identities=19% Similarity=-0.010 Sum_probs=13.9
Q ss_pred hcccccCCCceeeecc
Q psy3734 111 MKLDLVKNRPVQTYVA 126 (158)
Q Consensus 111 ~~l~~~~~r~vKiWfQ 126 (158)
++.+||+|||.|.-+|
T Consensus 80 rVqVWFKNRRAK~r~q 95 (228)
T KOG2251|consen 80 RVQVWFKNRRAKCRRQ 95 (228)
T ss_pred hhhhhhccccchhhHh
Confidence 6789999999998777
No 44
>KOG3623|consensus
Probab=65.08 E-value=2.9 Score=38.84 Aligned_cols=48 Identities=8% Similarity=0.013 Sum_probs=36.4
Q ss_pred CCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchhhHH
Q psy3734 75 FTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGTGRK 132 (158)
Q Consensus 75 ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR~~~ 132 (158)
|+.. +..|...|..+..|...+-..+|.+++++.. -||.||++++...
T Consensus 564 ~~~p-~sllkayyaln~~ps~eelskia~qvglp~~---------vvk~wfE~~~a~e 611 (1007)
T KOG3623|consen 564 FNHP-TSLLKAYYALNGLPSEEELSKIAQQVGLPFA---------VVKAWFEDEEAEE 611 (1007)
T ss_pred cCCc-HHHHHHHHHhcCCCCHHHHHHHHHHhcccHH---------HHHHHHHhhhhhh
Confidence 4443 6677888999999999998899977765544 4999999877433
No 45
>PTZ00352 60S ribosomal protein L13; Provisional
Probab=64.45 E-value=5.9 Score=31.21 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=21.5
Q ss_pred ceeeec-cchhhHHHHHHHHhHhhhhccCCCC
Q psy3734 120 PVQTYV-AYGTGRKKDLVYRRIEVEIKFIPND 150 (158)
Q Consensus 120 ~vKiWf-QnrR~~~k~~~~~~~~~~~~~~~~~ 150 (158)
+|++|| |..||.+|+..+..--.++.+=|.+
T Consensus 19 ~VktwFnQp~rK~rRR~aR~~KA~~i~prP~~ 50 (212)
T PTZ00352 19 FVKTWYNQPGRKKRRRLARQKKAAAAGPRPVE 50 (212)
T ss_pred hcccccCchHHHHHHHHHHHHHHHHhCCCCcc
Confidence 699999 5556777777766666666655543
No 46
>KOG0850|consensus
Probab=62.90 E-value=1.7 Score=34.74 Aligned_cols=55 Identities=18% Similarity=0.042 Sum_probs=35.3
Q ss_pred cCCCCcCCCCCC---------CCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeecc
Q psy3734 60 YASLPKRKQRRY---------RTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVA 126 (158)
Q Consensus 60 ~~~~~~rk~rR~---------Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQ 126 (158)
..+.+.||.|-. ++.|-..|-..| |...+-..-. +|+.+++.+||+|||-|+...
T Consensus 117 gk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLAL---------PERAeLAAsL---GLTQTQVKIWFQNrRSK~KKl 180 (245)
T KOG0850|consen 117 GKGKKVRKPRTIYSSLQLQALNRRFQQTQYLAL---------PERAELAASL---GLTQTQVKIWFQNRRSKFKKL 180 (245)
T ss_pred CCcccccCCcccccHHHHHHHHHHHhhcchhcC---------cHHHHHHHHh---CCchhHhhhhhhhhHHHHHHH
Confidence 346677777654 335666665544 5555554433 355789999999999887543
No 47
>KOG3862|consensus
Probab=62.14 E-value=7 Score=32.18 Aligned_cols=26 Identities=46% Similarity=0.861 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHhccccCCCCChhhh
Q psy3734 73 TTFTSFQLEELEKAFSRTHYPDVFTS 98 (158)
Q Consensus 73 t~ft~~Ql~~Le~~F~~~~yp~~~~r 98 (158)
..||+.+++.|+..|++.+|+.++.-
T Consensus 224 d~ft~~~~~~ld~~~~r~~y~~~~~~ 249 (327)
T KOG3862|consen 224 DAFTQQHLEPLDRSFERPHYPLVYAS 249 (327)
T ss_pred ccccccccccccceeecccccccccc
Confidence 36899999999999999999988754
No 48
>KOG0488|consensus
Probab=60.41 E-value=2 Score=35.80 Aligned_cols=58 Identities=22% Similarity=0.149 Sum_probs=32.7
Q ss_pred CCcCCCCCCCCCCCHHHHH---HHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeecc
Q psy3734 63 LPKRKQRRYRTTFTSFQLE---ELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVA 126 (158)
Q Consensus 63 ~~~rk~rR~Rt~ft~~Ql~---~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQ 126 (158)
-+.||.|=.=|.+--..|+ +-.+++...--...+.+..|. .++++.||+|||.|-.-|
T Consensus 170 kK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLT------daQVKtWfQNRRtKWKrq 230 (309)
T KOG0488|consen 170 KKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLT------DAQVKTWFQNRRTKWKRQ 230 (309)
T ss_pred cccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCc------hhhHHHHHhhhhHHHHHH
Confidence 4677766543333322222 223333333223345566655 779999999999985544
No 49
>KOG0492|consensus
Probab=58.41 E-value=2.7 Score=33.29 Aligned_cols=16 Identities=13% Similarity=-0.082 Sum_probs=13.8
Q ss_pred hhhcccccCCCceeee
Q psy3734 109 LLMKLDLVKNRPVQTY 124 (158)
Q Consensus 109 ~~~~l~~~~~r~vKiW 124 (158)
++++.+||||||.|-.
T Consensus 185 eTqVKIWFQNRRAKaK 200 (246)
T KOG0492|consen 185 ETQVKIWFQNRRAKAK 200 (246)
T ss_pred hhheehhhhhhhHHHH
Confidence 6799999999998854
No 50
>PTZ00192 60S ribosomal protein L13; Provisional
Probab=47.34 E-value=20 Score=28.40 Aligned_cols=31 Identities=10% Similarity=0.036 Sum_probs=20.9
Q ss_pred ceeeec-cchhhHHHHHHHHhHhhhhccCCCC
Q psy3734 120 PVQTYV-AYGTGRKKDLVYRRIEVEIKFIPND 150 (158)
Q Consensus 120 ~vKiWf-QnrR~~~k~~~~~~~~~~~~~~~~~ 150 (158)
.|++|| |..||.+|+..+..--.++.+=|.+
T Consensus 26 ~VktwFnQP~rK~rRR~~R~~KA~~iaPRP~~ 57 (218)
T PTZ00192 26 NVKVFLNQPAQKHRRRRLRLLKAKKIFPRPLK 57 (218)
T ss_pred ceeeecCchHHHHHHHHHHHHHHHHhCCCCCc
Confidence 399999 5555777777766666666655543
No 51
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=46.41 E-value=23 Score=21.72 Aligned_cols=36 Identities=19% Similarity=0.073 Sum_probs=27.1
Q ss_pred CCHHHHHHHHhccccCCC--CChhhhhhhhhhhccchh
Q psy3734 75 FTSFQLEELEKAFSRTHY--PDVFTSTGSIAVFKPFLL 110 (158)
Q Consensus 75 ft~~Ql~~Le~~F~~~~y--p~~~~r~~LA~~l~~~~~ 110 (158)
+|..|.+.|..++....| |-...-.+||..++++.+
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~s 38 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKS 38 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHH
Confidence 478899999999988876 444456789988876554
No 52
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.01 E-value=34 Score=19.35 Aligned_cols=13 Identities=46% Similarity=0.603 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHhc
Q psy3734 74 TFTSFQLEELEKA 86 (158)
Q Consensus 74 ~ft~~Ql~~Le~~ 86 (158)
.||..|+.+|+.-
T Consensus 2 ~FT~~Ql~~L~~Q 14 (37)
T PF08880_consen 2 PFTPAQLQELRAQ 14 (37)
T ss_pred CCCHHHHHHHHHH
Confidence 6999999999853
No 53
>PHA02535 P terminase ATPase subunit; Provisional
Probab=28.34 E-value=82 Score=28.73 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=18.6
Q ss_pred CCCCCCCCHHHHHHHHhccccCCCC
Q psy3734 69 RRYRTTFTSFQLEELEKAFSRTHYP 93 (158)
Q Consensus 69 rR~Rt~ft~~Ql~~Le~~F~~~~yp 93 (158)
++.+-.||..|+..|...|...-|+
T Consensus 117 ~~~kn~~s~~~~~~l~~~~~~~l~~ 141 (581)
T PHA02535 117 KPVKNDISDEQTEKLIEAFLDSLFD 141 (581)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3345579999999999988665443
No 54
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=23.79 E-value=70 Score=24.73 Aligned_cols=37 Identities=19% Similarity=0.104 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHhccccCCC--CChhhhhhhhhhhccchh
Q psy3734 74 TFTSFQLEELEKAFSRTHY--PDVFTSTGSIAVFKPFLL 110 (158)
Q Consensus 74 ~ft~~Ql~~Le~~F~~~~y--p~~~~r~~LA~~l~~~~~ 110 (158)
.+|..|++.|..+|....| |-...-.+||..++++.+
T Consensus 155 ~LTdrQ~~vL~~A~~~GYFd~PR~~~l~dLA~~lGISks 193 (215)
T COG3413 155 DLTDRQLEVLRLAYKMGYFDYPRRVSLKDLAKELGISKS 193 (215)
T ss_pred cCCHHHHHHHHHHHHcCCCCCCccCCHHHHHHHhCCCHH
Confidence 6999999999999998866 444455689988887655
No 55
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=23.22 E-value=39 Score=20.37 Aligned_cols=47 Identities=17% Similarity=0.094 Sum_probs=27.2
Q ss_pred CCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh
Q psy3734 69 RRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT 129 (158)
Q Consensus 69 rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR 129 (158)
+|.|..+|-.+-..+-..++... ...++|..++++.+ +|.-|..|+.
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~s---------Tv~~I~K~k~ 47 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRS---------TVSTILKNKD 47 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CC---------HHHHHHHCHH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHH---------HHHHHHHhHH
Confidence 45677888888777766666654 55678855554444 6666666543
Done!