Query psy3734
Match_columns 158
No_of_seqs 150 out of 1498
Neff 7.3
Searched_HMMs 29240
Date Sat Aug 17 00:11:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt0_A Nanog, homeobox protein 99.8 3.4E-20 1.2E-24 124.7 1.4 64 64-136 18-82 (84)
2 2dmt_A Homeobox protein BARH-l 99.8 6.5E-20 2.2E-24 122.4 1.7 63 64-135 13-76 (80)
3 2cue_A Paired box protein PAX6 99.7 3.5E-19 1.2E-23 118.9 3.3 65 66-139 5-70 (80)
4 1wh5_A ZF-HD homeobox family p 99.7 1.4E-19 4.9E-24 121.0 1.3 60 65-133 14-78 (80)
5 1wh7_A ZF-HD homeobox family p 99.7 1.5E-19 5.1E-24 120.9 1.3 59 65-133 14-78 (80)
6 2da3_A Alpha-fetoprotein enhan 99.7 1.7E-19 5.7E-24 120.1 0.9 63 64-135 13-76 (80)
7 1nk2_P Homeobox protein VND; h 99.7 3.2E-19 1.1E-23 118.2 2.2 65 64-137 5-70 (77)
8 2m0c_A Homeobox protein arista 99.7 1.1E-19 3.7E-24 119.5 -0.7 68 65-141 6-74 (75)
9 2cra_A Homeobox protein HOX-B1 99.7 2.4E-19 8.3E-24 116.7 0.8 62 65-135 4-66 (70)
10 2dmu_A Homeobox protein goosec 99.7 4.3E-19 1.5E-23 115.4 1.8 62 66-136 5-67 (70)
11 1puf_A HOX-1.7, homeobox prote 99.7 7.3E-19 2.5E-23 116.5 2.9 64 64-136 9-73 (77)
12 2dms_A Homeobox protein OTX2; 99.7 5E-19 1.7E-23 118.0 1.9 63 65-136 4-67 (80)
13 2da1_A Alpha-fetoprotein enhan 99.7 2.4E-19 8.1E-24 116.6 0.3 64 64-136 3-67 (70)
14 2djn_A Homeobox protein DLX-5; 99.7 4E-19 1.4E-23 115.6 0.9 62 65-135 4-66 (70)
15 2da2_A Alpha-fetoprotein enhan 99.7 4.6E-19 1.6E-23 115.2 1.0 62 65-135 4-66 (70)
16 1fjl_A Paired protein; DNA-bin 99.7 6.4E-19 2.2E-23 117.8 1.6 64 64-136 14-78 (81)
17 2dmq_A LIM/homeobox protein LH 99.7 9.2E-19 3.2E-23 116.6 2.4 62 66-136 5-67 (80)
18 2h1k_A IPF-1, pancreatic and d 99.7 4.4E-19 1.5E-23 113.2 0.7 59 68-135 3-62 (63)
19 3a01_A Homeodomain-containing 99.7 1.3E-18 4.5E-23 119.3 2.7 63 65-136 14-77 (93)
20 1yz8_P Pituitary homeobox 2; D 99.7 5.1E-19 1.8E-23 114.5 0.5 62 67-137 2-64 (68)
21 2vi6_A Homeobox protein nanog; 99.7 4.3E-19 1.5E-23 112.8 -0.1 59 67-134 2-61 (62)
22 2hdd_A Protein (engrailed home 99.7 5.5E-19 1.9E-23 112.0 0.3 57 68-133 3-60 (61)
23 1zq3_P PRD-4, homeotic bicoid 99.7 1.3E-18 4.3E-23 112.7 1.6 61 68-137 2-63 (68)
24 2r5y_A Homeotic protein sex co 99.7 1.2E-18 4.1E-23 118.2 1.5 61 66-135 26-87 (88)
25 1ahd_P Antennapedia protein mu 99.7 1.1E-18 3.8E-23 113.0 0.8 60 68-136 2-62 (68)
26 2l7z_A Homeobox protein HOX-A1 99.7 1.9E-18 6.5E-23 113.4 1.8 62 65-135 4-66 (73)
27 1ftt_A TTF-1 HD, thyroid trans 99.7 6.1E-19 2.1E-23 114.2 -0.5 61 68-137 2-63 (68)
28 2e1o_A Homeobox protein PRH; D 99.7 2.4E-18 8.1E-23 112.0 2.1 60 67-135 6-66 (70)
29 1ig7_A Homeotic protein MSX-1; 99.7 1.6E-18 5.5E-23 108.7 1.2 56 69-133 1-57 (58)
30 1bw5_A ISL-1HD, insulin gene e 99.7 9.3E-19 3.2E-23 112.6 -0.2 60 67-135 2-62 (66)
31 2da4_A Hypothetical protein DK 99.7 1.2E-18 4.1E-23 116.2 0.3 61 65-134 5-70 (80)
32 1jgg_A Segmentation protein EV 99.7 2.2E-18 7.4E-23 108.9 0.6 57 69-134 2-59 (60)
33 1b8i_A Ultrabithorax, protein 99.7 2E-18 6.8E-23 115.5 -0.0 60 67-135 19-79 (81)
34 1b72_A Protein (homeobox prote 99.7 3.4E-18 1.2E-22 118.0 1.1 63 66-137 32-95 (97)
35 3rkq_A Homeobox protein NKX-2. 99.7 7.6E-18 2.6E-22 105.3 2.2 56 68-132 2-58 (58)
36 2k40_A Homeobox expressed in E 99.7 2.3E-18 8E-23 111.0 -0.3 60 69-137 2-62 (67)
37 3nar_A ZHX1, zinc fingers and 99.7 3.2E-18 1.1E-22 117.9 0.4 61 66-135 23-84 (96)
38 2ecc_A Homeobox and leucine zi 99.7 7E-18 2.4E-22 111.5 1.9 56 71-135 6-62 (76)
39 2da6_A Hepatocyte nuclear fact 99.7 1.7E-17 5.7E-22 115.3 3.9 72 65-137 3-88 (102)
40 2cuf_A FLJ21616 protein; homeo 99.7 7.2E-18 2.5E-22 115.9 2.0 73 64-137 3-83 (95)
41 1akh_A Protein (mating-type pr 99.7 4.4E-18 1.5E-22 107.7 0.6 58 66-132 3-61 (61)
42 2hi3_A Homeodomain-only protei 99.7 7.9E-18 2.7E-22 110.4 1.4 59 69-136 3-63 (73)
43 3a02_A Homeobox protein arista 99.7 3.7E-18 1.3E-22 107.8 -0.3 57 71-136 2-59 (60)
44 3a03_A T-cell leukemia homeobo 99.7 5E-18 1.7E-22 105.9 0.3 53 73-134 2-55 (56)
45 1uhs_A HOP, homeodomain only p 99.7 9.9E-18 3.4E-22 109.6 1.7 59 69-136 2-62 (72)
46 2ly9_A Zinc fingers and homeob 99.7 1E-17 3.4E-22 110.0 0.4 60 68-136 6-66 (74)
47 1x2n_A Homeobox protein pknox1 99.6 3.7E-17 1.3E-21 107.1 2.8 62 65-135 4-69 (73)
48 1puf_B PRE-B-cell leukemia tra 99.6 3.5E-17 1.2E-21 107.2 2.4 64 69-141 2-69 (73)
49 2dn0_A Zinc fingers and homeob 99.6 7E-18 2.4E-22 111.5 -1.1 59 69-136 9-68 (76)
50 1wi3_A DNA-binding protein SAT 99.6 2.4E-17 8.2E-22 106.0 1.1 56 65-129 4-60 (71)
51 2da5_A Zinc fingers and homeob 99.6 3E-17 1E-21 108.2 1.5 57 71-136 10-67 (75)
52 2ecb_A Zinc fingers and homeob 99.6 8.1E-18 2.8E-22 114.5 -1.4 57 74-139 17-74 (89)
53 1e3o_C Octamer-binding transcr 99.6 1.4E-17 4.9E-22 124.5 -0.3 60 66-134 99-159 (160)
54 1lfb_A Liver transcription fac 99.6 1.8E-17 6.1E-22 115.0 -0.5 72 64-136 5-90 (99)
55 1au7_A Protein PIT-1, GHF-1; c 99.6 2E-17 7E-22 122.0 -0.6 61 65-134 84-145 (146)
56 1b72_B Protein (PBX1); homeodo 99.6 9E-17 3.1E-21 108.5 2.0 65 69-142 2-70 (87)
57 2xsd_C POU domain, class 3, tr 99.6 2.5E-17 8.5E-22 123.8 -0.9 63 65-136 96-159 (164)
58 1du6_A PBX1, homeobox protein 99.6 4.8E-17 1.6E-21 103.9 0.5 57 68-133 3-63 (64)
59 3nau_A Zinc fingers and homeob 99.6 1.8E-16 6.2E-21 101.7 1.6 51 76-135 12-63 (66)
60 3d1n_I POU domain, class 6, tr 99.6 1.1E-16 3.6E-21 118.7 0.4 61 64-133 89-150 (151)
61 2dmn_A Homeobox protein TGIF2L 99.6 4E-16 1.4E-20 104.8 3.1 62 66-136 5-70 (83)
62 2cqx_A LAG1 longevity assuranc 99.6 5E-17 1.7E-21 106.5 -1.9 58 69-135 9-68 (72)
63 3l1p_A POU domain, class 5, tr 99.6 3.2E-16 1.1E-20 116.6 1.9 60 66-134 94-154 (155)
64 1mnm_C Protein (MAT alpha-2 tr 99.6 5.2E-16 1.8E-20 104.9 2.2 57 67-132 26-86 (87)
65 1k61_A Mating-type protein alp 99.6 4E-16 1.4E-20 98.3 1.6 53 72-133 2-58 (60)
66 2dmp_A Zinc fingers and homeob 99.6 4.6E-16 1.6E-20 105.8 1.5 54 74-136 19-73 (89)
67 1le8_B Mating-type protein alp 99.6 5.2E-16 1.8E-20 104.1 1.4 58 71-137 5-66 (83)
68 2l9r_A Homeobox protein NKX-3. 99.6 1.8E-16 6.2E-21 103.0 -0.9 55 73-136 9-64 (69)
69 2d5v_A Hepatocyte nuclear fact 99.5 6.3E-16 2.2E-20 115.8 0.3 63 65-136 94-157 (164)
70 2e19_A Transcription factor 8; 99.5 1.4E-15 4.7E-20 97.4 -0.1 53 72-133 7-59 (64)
71 1x2m_A LAG1 longevity assuranc 99.5 9.8E-16 3.4E-20 98.0 -1.2 47 78-133 10-58 (64)
72 1ic8_A Hepatocyte nuclear fact 99.5 1.8E-15 6.2E-20 116.3 -0.8 66 64-130 111-189 (194)
73 3k2a_A Homeobox protein MEIS2; 99.4 3.5E-14 1.2E-18 91.5 0.7 55 74-137 4-62 (67)
74 2h8r_A Hepatocyte nuclear fact 99.4 4E-14 1.4E-18 110.4 0.4 66 64-130 138-216 (221)
75 1mh3_A Maltose binding-A1 home 99.1 4.3E-12 1.5E-16 105.3 -1.3 56 68-132 365-421 (421)
76 2lk2_A Homeobox protein TGIF1; 99.1 3.5E-11 1.2E-15 81.4 1.7 55 73-136 10-68 (89)
77 2da7_A Zinc finger homeobox pr 99.0 1.4E-11 4.8E-16 79.5 -0.8 45 77-130 14-58 (71)
78 2nzz_A Penetratin conjugated G 98.9 7.7E-11 2.6E-15 67.1 -0.3 22 119-140 1-23 (37)
79 2rgt_A Fusion of LIM/homeobox 85.1 0.027 9.4E-07 41.2 -4.4 31 66-96 134-164 (169)
80 2jtd_A Myomesin-1, skelemin; i 70.9 0.21 7.1E-06 35.5 -3.1 43 74-126 18-60 (142)
81 2ys9_A Homeobox and leucine zi 65.7 1.3 4.3E-05 28.1 -0.0 37 81-126 19-55 (70)
No 1
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=3.4e-20 Score=124.67 Aligned_cols=64 Identities=23% Similarity=0.254 Sum_probs=54.8
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
..++.+|.||.||..|+..||..|..++||+..++.+||..++ |.+. +|+||||||| ++||..+
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--------l~~~-qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILN--------LSYK-QVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTT--------CCHH-HHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC--------CCHH-HHHHHHHHHHHHHHHHhh
Confidence 4556788999999999999999999999999999999995555 4444 8999999999 8877643
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=6.5e-20 Score=122.40 Aligned_cols=63 Identities=29% Similarity=0.297 Sum_probs=54.5
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHH
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDL 135 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~ 135 (158)
..++.+|.||.||..|+..||..|..++||+..++++||..++| .+. +|+||||||| +|||..
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L--------~~~-qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGL--------SQL-QVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCC--------CHH-HHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCC--------CHH-HeeeccHHHHHHhhccc
Confidence 45567889999999999999999999999999999999955554 444 8999999999 887754
No 3
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=3.5e-19 Score=118.86 Aligned_cols=65 Identities=35% Similarity=0.535 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHHHh
Q psy3734 66 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVYRR 139 (158)
Q Consensus 66 rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~~~ 139 (158)
.+.+|.||.||..|+..||..|..++||+..++.+||..++ |.+. +|+||||||| +|+|+.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--------l~~~-qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKID--------LPEA-RIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT--------CCHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhC--------CCHH-HhhHHHHHHHHHHHHHhhhhh
Confidence 45678999999999999999999999999999999995555 4444 8999999999 8888876554
No 4
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.75 E-value=1.4e-19 Score=120.97 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=51.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHhcccc----CCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHH
Q psy3734 65 KRKQRRYRTTFTSFQLEELEKAFSR----THYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKK 133 (158)
Q Consensus 65 ~rk~rR~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k 133 (158)
.++.+|.||.||..|+.+||..|+. ++||+..+|++||..|+ |.+. +||||||||| |+++
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lg--------L~~~-~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETG--------VPRQ-VLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSC--------CCHH-HHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhC--------CCcc-cccCCccccCcCCCC
Confidence 3467889999999999999999999 99999999999995555 4444 8999999999 7764
No 5
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.75 E-value=1.5e-19 Score=120.92 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=50.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHhcccc-----CCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHH
Q psy3734 65 KRKQRRYRTTFTSFQLEELEKAFSR-----THYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKK 133 (158)
Q Consensus 65 ~rk~rR~Rt~ft~~Ql~~Le~~F~~-----~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k 133 (158)
..+.+|.||.||.+|+.+|| .|.. ++||+..+|++||..|+ |.+. +||||||||| |+++
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lg--------L~e~-qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETG--------VRRQ-VLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSC--------CCHH-HHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhC--------cCcC-cccccccccccCCCC
Confidence 34578899999999999999 8999 99999999999995555 4444 8999999999 7764
No 6
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-19 Score=120.12 Aligned_cols=63 Identities=21% Similarity=0.117 Sum_probs=54.2
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHH
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDL 135 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~ 135 (158)
..++.+|.||.||.+|+..||..|..++||+..++++||..++|++ . +|+||||||| ++||+.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~--------~-qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKK--------R-VVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCH--------H-HHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCH--------H-HhHHHhHHHHHhHhhhc
Confidence 3456788999999999999999999999999999999996555444 4 8999999999 887754
No 7
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.74 E-value=3.2e-19 Score=118.22 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=55.2
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHH
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVY 137 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~ 137 (158)
..++.+|.||.||..|+..||..|..++||+...+.+||..++ |.+. +|+||||||| +++|....
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--------l~~~-qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIR--------LTPT-QVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTT--------CCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC--------CCHH-HHHHHhHHhhcchhhhhcc
Confidence 3456788999999999999999999999999999999995555 4444 8999999999 77776553
No 8
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-19 Score=119.54 Aligned_cols=68 Identities=40% Similarity=0.550 Sum_probs=58.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHHHhHh
Q psy3734 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVYRRIE 141 (158)
Q Consensus 65 ~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~~~~~ 141 (158)
..+.+|.||.||..|+..||..|..++||+..++++||..++|+. . +|+||||||| +|+|+.+.++++
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~--------~-qV~~WFqNrR~k~kk~~r~~q~q 74 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTE--------A-RVQVWFQNRRAKWRKRERFGQMQ 74 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCH--------H-HHHHHHHHHHHHHTCCCCCCSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCH--------H-HHHHHhHHHHHHHHHHHhhhhcc
Confidence 445678999999999999999999999999999999996665444 3 8999999999 999988766553
No 9
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=2.4e-19 Score=116.69 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=53.4
Q ss_pred cCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHH
Q psy3734 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDL 135 (158)
Q Consensus 65 ~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~ 135 (158)
..+.++.||.||..|+..||..|..++||+..++++||..++| .+. +|+||||||| +++|..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l--------~~~-qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSL--------SER-QITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCC--------CHH-HHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCC--------CHH-HhhHhhHhHHHHhcccC
Confidence 4457789999999999999999999999999999999955554 444 8999999999 777754
No 10
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.3e-19 Score=115.44 Aligned_cols=62 Identities=31% Similarity=0.337 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 66 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 66 rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
.+.+|.||.||..|+..||..|..++||+..++++||..++| .+. +|+||||||| +++|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l--------~~~-qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHL--------REE-KVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTC--------CHH-HHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCC--------CHH-HeehccccccccccccCC
Confidence 456789999999999999999999999999999999955554 444 8999999999 8877643
No 11
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.73 E-value=7.3e-19 Score=116.47 Aligned_cols=64 Identities=22% Similarity=0.170 Sum_probs=55.0
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
..++.++.||.||..|+..||..|..++||+..++++||..++| .+. +|+||||||| +++|...
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l--------~~~-qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNL--------TER-QVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTC--------CHH-HHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCc--------CHH-HHHHHHHHHHHHHHHhhh
Confidence 34567889999999999999999999999999999999955554 444 8999999999 8887765
No 12
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=5e-19 Score=118.04 Aligned_cols=63 Identities=32% Similarity=0.443 Sum_probs=54.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 65 ~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
.++.+|.||.||..|+..||..|..++||+..++++||..++ |.+. +|+||||||| +++|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--------l~~~-qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKIN--------LPES-RVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTT--------CCHH-HHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHC--------cCHH-HhhhhhHHHhHHhhHHHH
Confidence 456788999999999999999999999999999999995555 4444 8999999999 8888765
No 13
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-19 Score=116.63 Aligned_cols=64 Identities=14% Similarity=0.059 Sum_probs=54.5
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
...+.+|.||.||..|+..||..|..++||+..++.+||..++|+ +. +|+||||||| +++|+..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~--------~~-qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLP--------QK-VIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCC--------HH-HHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCC--------HH-HHHHHhhhhhHHHhhhcc
Confidence 345678899999999999999999999999999999999555544 44 8999999999 8877643
No 14
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4e-19 Score=115.64 Aligned_cols=62 Identities=26% Similarity=0.351 Sum_probs=53.1
Q ss_pred cCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHH
Q psy3734 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDL 135 (158)
Q Consensus 65 ~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~ 135 (158)
..+.++.||.||..|+..||..|..++||+..++++||..++ |.+. +|+||||||| +++|..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--------l~~~-qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLG--------LTQT-QVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSS--------CCHH-HHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhC--------CCHH-HHHHHHHHHhhhhcccC
Confidence 345678999999999999999999999999999999995555 4444 8999999999 777653
No 15
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=4.6e-19 Score=115.24 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=53.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHH
Q psy3734 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDL 135 (158)
Q Consensus 65 ~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~ 135 (158)
..+.++.||.||..|+..||..|..++||+..++++||..++| .+. +|+||||||| +++|+.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l--------~~~-qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNL--------PTR-VIVVWFQNARQKARKSG 66 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCC--------CHH-HHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC--------CHH-HhHHhhHhhhHHHhhcc
Confidence 4457789999999999999999999999999999999955554 444 8999999999 887754
No 16
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.72 E-value=6.4e-19 Score=117.77 Aligned_cols=64 Identities=39% Similarity=0.524 Sum_probs=53.9
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
..++.+|.||.||..|+..||..|..++||+...+.+||..++|++ . +|+||||||| +++|+..
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~--------~-qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTE--------A-RIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCH--------H-HHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCH--------H-HHHHHHHHHhhhhhhhcc
Confidence 3566788999999999999999999999999999999996655444 4 8999999999 8888764
No 17
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=9.2e-19 Score=116.62 Aligned_cols=62 Identities=21% Similarity=0.298 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 66 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 66 rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
.+.+|.||.||..|+..||..|..++||+..++++||..++| .+. +|+||||||| ++||+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l--------~~~-qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGL--------TKR-VLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCC--------CHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCC--------CHH-HhhHccHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999955554 444 8999999999 8887654
No 18
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.72 E-value=4.4e-19 Score=113.23 Aligned_cols=59 Identities=24% Similarity=0.236 Sum_probs=50.6
Q ss_pred CCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHH
Q psy3734 68 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDL 135 (158)
Q Consensus 68 ~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~ 135 (158)
.+|.||.||..|+..||..|..++||+...+.+||..++|++ . +|+||||||| +|+|..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~--------~-qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTE--------R-HIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCH--------H-HHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCH--------H-HhhHHHHhhhhhhhhhc
Confidence 577999999999999999999999999999999996665444 4 8999999999 888763
No 19
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.72 E-value=1.3e-18 Score=119.29 Aligned_cols=63 Identities=24% Similarity=0.361 Sum_probs=54.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 65 ~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
..+.+|.||.||..|+..||..|..++||+...+.+||..++ +.+. +|+||||||| ||+|+..
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~--------L~~~-qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLK--------MTDA-QVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTT--------CCHH-HHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC--------CChh-hcccccHhhhhhhhhhhH
Confidence 445678999999999999999999999999999999995555 4444 8999999999 8888765
No 20
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.72 E-value=5.1e-19 Score=114.53 Aligned_cols=62 Identities=32% Similarity=0.422 Sum_probs=54.0
Q ss_pred CCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHH
Q psy3734 67 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVY 137 (158)
Q Consensus 67 k~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~ 137 (158)
+.+|.||.||..|+..||..|..++||+..++.+||..++| .+. +|+||||||| +|+|+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l--------~~~-qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNL--------TEA-RVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTS--------CHH-HHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCc--------CHH-HHHHHHHHHhHHHHHHhhc
Confidence 36789999999999999999999999999999999955554 444 8999999999 88887653
No 21
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.72 E-value=4.3e-19 Score=112.85 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=47.1
Q ss_pred CCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHH
Q psy3734 67 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKD 134 (158)
Q Consensus 67 k~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~ 134 (158)
+.++.||.||..|+..||..|..++||+..++.+||..++|+ +. +|+||||||| +++|+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~--------~~-qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLS--------YK-QVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCC--------HH-HHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC--------HH-HhhHHhHHhhcchhhc
Confidence 357789999999999999999999999999999999555544 44 8999999999 77764
No 22
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.72 E-value=5.5e-19 Score=112.02 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=47.6
Q ss_pred CCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHH
Q psy3734 68 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKK 133 (158)
Q Consensus 68 ~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k 133 (158)
.+|.||.||..|+..||..|..++||+..++++||..++|++ . +|+||||||| +++|
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~--------~-qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNE--------A-QIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCH--------H-HHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCH--------H-HHHHHhhhhcccccc
Confidence 577999999999999999999999999999999996655444 4 8999999999 7776
No 23
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.71 E-value=1.3e-18 Score=112.71 Aligned_cols=61 Identities=28% Similarity=0.214 Sum_probs=52.8
Q ss_pred CCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHH
Q psy3734 68 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVY 137 (158)
Q Consensus 68 ~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~ 137 (158)
.+|.||.||..|+..||..|..++||+...+.+||..++|++ . +|+||||||| ++++....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~--------~-qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGT--------A-QVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCH--------H-HHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCH--------H-HhhHhhHHHHHHHHHHhcc
Confidence 577999999999999999999999999999999996555444 4 8999999999 77776653
No 24
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.71 E-value=1.2e-18 Score=118.22 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=49.7
Q ss_pred CCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHH
Q psy3734 66 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDL 135 (158)
Q Consensus 66 rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~ 135 (158)
.+.+|.||.||..|+..||..|..++||+..++.+||..++| .+. +|+||||||| ++||+.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l--------~~~-qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSL--------TER-QIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTC--------CHH-HHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCc--------CHH-HhhHHhHHHHHHhHhhc
Confidence 346789999999999999999999999999999999955554 444 8999999999 888754
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.71 E-value=1.1e-18 Score=113.03 Aligned_cols=60 Identities=22% Similarity=0.221 Sum_probs=52.3
Q ss_pred CCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 68 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 68 ~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
.+|.||.||..|+..||..|..++||+..++.+||..++|++ . +|+||||||| +++|...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~--------~-qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTE--------R-QIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCH--------H-HHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCH--------h-hhhHHhHHHHhHHhHhcc
Confidence 467899999999999999999999999999999996555444 4 8999999999 8887654
No 26
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.71 E-value=1.9e-18 Score=113.39 Aligned_cols=62 Identities=21% Similarity=0.270 Sum_probs=53.4
Q ss_pred cCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHH
Q psy3734 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDL 135 (158)
Q Consensus 65 ~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~ 135 (158)
..+.++.||.||..|+..||..|..++||+..++.+||..++ |.+. +|+||||||| +++|..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--------l~~~-qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN--------LSER-QVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHT--------SCSH-HHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHC--------CCHH-HHHHHHHHHhHHHHHHh
Confidence 345788999999999999999999999999999999995554 4544 8999999999 777754
No 27
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.70 E-value=6.1e-19 Score=114.22 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=53.0
Q ss_pred CCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHH
Q psy3734 68 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVY 137 (158)
Q Consensus 68 ~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~ 137 (158)
.+|.||.||..|+..||..|..++||+...+.+||..++| .+. +|+||||||| ++++....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l--------~~~-qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHL--------TPT-QVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTS--------CHH-HHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC--------CHH-HhHHHhHHHhhhhhhhhhH
Confidence 4678999999999999999999999999999999955554 444 8999999999 88887653
No 28
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=2.4e-18 Score=111.97 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=51.7
Q ss_pred CCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHH
Q psy3734 67 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDL 135 (158)
Q Consensus 67 k~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~ 135 (158)
+.++.|+.||..|+..||..|..++||+..++.+||..++| .+. +|+||||||| ++++..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l--------~~~-qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQL--------SER-QVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTC--------CHH-HHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCC--------CHH-HhhHhhHhhHhhcCCCC
Confidence 45678999999999999999999999999999999955554 444 8999999999 777754
No 29
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=1.6e-18 Score=108.68 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=49.1
Q ss_pred CCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHH
Q psy3734 69 RRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKK 133 (158)
Q Consensus 69 rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k 133 (158)
||.||.||..|+..||..|..++||+..++.+||..+++++ . +|++|||||| ++||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~--------~-qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTE--------T-QVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCH--------H-HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCH--------H-HhhhhhhHhhhhhcc
Confidence 57899999999999999999999999999999995555444 4 8999999999 6664
No 30
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.70 E-value=9.3e-19 Score=112.61 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=52.4
Q ss_pred CCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHH
Q psy3734 67 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDL 135 (158)
Q Consensus 67 k~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~ 135 (158)
+.+|.||.||..|+..||..|..++||+..++++||..++|+. . +|++|||||| +++|+.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~--------~-qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSP--------R-VIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCH--------H-HHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCH--------H-HHHHHhHHHHHHHhHHh
Confidence 4678999999999999999999999999999999996665444 4 8999999999 887764
No 31
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-18 Score=116.15 Aligned_cols=61 Identities=13% Similarity=0.026 Sum_probs=52.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHhccccC----CCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHH
Q psy3734 65 KRKQRRYRTTFTSFQLEELEKAFSRT----HYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKD 134 (158)
Q Consensus 65 ~rk~rR~Rt~ft~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~ 134 (158)
.++.+|.||.||..|+..||..|..+ +||+..++++||..++|++ . +|+||||||| |++|.
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~--------~-qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDC--------E-IVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCH--------H-HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCH--------H-HhhHhHHHHHHHHhhc
Confidence 45678899999999999999999999 9999999999996665444 4 8999999999 77764
No 32
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.69 E-value=2.2e-18 Score=108.92 Aligned_cols=57 Identities=28% Similarity=0.347 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHH
Q psy3734 69 RRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKD 134 (158)
Q Consensus 69 rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~ 134 (158)
||.||.||..|+..||..|..++||+..++.+||..++|++ . +|++|||||| +++|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~--------~-qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPE--------S-TIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCH--------H-HHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCH--------H-HHHHhhHHHHhHhhcc
Confidence 57899999999999999999999999999999996665444 4 8999999999 77664
No 33
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.69 E-value=2e-18 Score=115.48 Aligned_cols=60 Identities=25% Similarity=0.342 Sum_probs=48.6
Q ss_pred CCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHH
Q psy3734 67 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDL 135 (158)
Q Consensus 67 k~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~ 135 (158)
+.+|.||.||..|+..||..|..++||+..++++||..++| .+. +|+||||||| ++||..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l--------~~~-qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSL--------TER-QIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTC--------CHH-HHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCC--------CHH-HHHHHhHHhhhhhhhhc
Confidence 45779999999999999999999999999999999955554 444 8999999999 877753
No 34
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=3.4e-18 Score=117.98 Aligned_cols=63 Identities=25% Similarity=0.209 Sum_probs=51.4
Q ss_pred CCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHH
Q psy3734 66 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVY 137 (158)
Q Consensus 66 rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~ 137 (158)
.+.++.||.||..|+..||..|..++||+..++.+||..++|++ . +|+||||||| ++||+.+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~--------~-qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNE--------T-QVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCH--------H-HHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCH--------H-HhHHHHHHHhHHHhHHhcc
Confidence 34677899999999999999999999999999999996555444 4 8999999999 88887654
No 35
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.68 E-value=7.6e-18 Score=105.29 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=48.8
Q ss_pred CCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHH
Q psy3734 68 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRK 132 (158)
Q Consensus 68 ~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~ 132 (158)
.++.||.||..|+..||..|..++||+..++++||..++++. . +|+||||||| ++|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~--------~-qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTS--------T-QVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCH--------H-HHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCH--------H-HHHHhhHHhhccCC
Confidence 467899999999999999999999999999999996665444 3 8999999999 653
No 36
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-18 Score=111.03 Aligned_cols=60 Identities=27% Similarity=0.290 Sum_probs=52.4
Q ss_pred CCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHH
Q psy3734 69 RRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVY 137 (158)
Q Consensus 69 rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~ 137 (158)
||.||.||..|+..||..|..++||+..++.+||..++|++ . +|++|||||| +++|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~--------~-qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLEL--------D-RIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCH--------H-HHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCH--------H-HhhHhhHhHHHHHhHhchh
Confidence 67899999999999999999999999999999996665444 4 8999999999 88876653
No 37
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.68 E-value=3.2e-18 Score=117.91 Aligned_cols=61 Identities=16% Similarity=0.039 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHH
Q psy3734 66 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDL 135 (158)
Q Consensus 66 rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~ 135 (158)
...+|.||.||..|+..||..|..++||+..++++||..++|+. . +|+||||||| |+||+.
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~--------~-qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLAR--------T-DIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCH--------H-HHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCH--------H-HeeecchhhhhHhhhhc
Confidence 44567899999999999999999999999999999996665444 3 8999999999 777764
No 38
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=7e-18 Score=111.49 Aligned_cols=56 Identities=11% Similarity=-0.070 Sum_probs=48.6
Q ss_pred CCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHH
Q psy3734 71 YRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDL 135 (158)
Q Consensus 71 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~ 135 (158)
.|+.||.+|+.+||..|..++||+..+|++||..++|++. ||+||||||| +||+..
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~---------qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRP---------EIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHH---------HHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHH---------HhhHHhHhhHHHHHHHH
Confidence 5567999999999999999999999999999966665444 8999999999 777764
No 39
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-17 Score=115.30 Aligned_cols=72 Identities=11% Similarity=0.005 Sum_probs=57.1
Q ss_pred cCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhc--------cchhhcc-----cccCCCceeeeccchh-h
Q psy3734 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFK--------PFLLMKL-----DLVKNRPVQTYVAYGT-G 130 (158)
Q Consensus 65 ~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~--------~~~~~~l-----~~~~~r~vKiWfQnrR-~ 130 (158)
.++.||.||.|+..|+..||..|+.++||+..+|++||..++ ++++..- .+++. +|++|||||| +
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~-~V~~WFqNRR~k 81 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEV-RVYNWFANRRKE 81 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHH-HHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhccccccccccc-ceeeeecchHHH
Confidence 456788999999999999999999999999999999998883 1111111 24455 8999999999 7
Q ss_pred HHHHHHH
Q psy3734 131 RKKDLVY 137 (158)
Q Consensus 131 ~~k~~~~ 137 (158)
++++.+.
T Consensus 82 ~kr~~~~ 88 (102)
T 2da6_A 82 EAFRQKL 88 (102)
T ss_dssp HHHHHHH
T ss_pred HHHhhHh
Confidence 7776653
No 40
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=7.2e-18 Score=115.92 Aligned_cols=73 Identities=18% Similarity=0.128 Sum_probs=56.6
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccc-------hhhcccccCCCceeeeccchh-hHHHHH
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPF-------LLMKLDLVKNRPVQTYVAYGT-GRKKDL 135 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~-------~~~~l~~~~~r~vKiWfQnrR-~~~k~~ 135 (158)
..++.+|.||.|+..|+..||..|+.++||+...+++||..++-. .+..-.+.+. +|++|||||| +++++.
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~-qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSL-KVYNWFANRRKEIKRRA 81 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHH-HHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHH-HHHHHHHHHHHHHHHHh
Confidence 345678899999999999999999999999999999999666500 0000004444 8999999999 887776
Q ss_pred HH
Q psy3734 136 VY 137 (158)
Q Consensus 136 ~~ 137 (158)
..
T Consensus 82 ~~ 83 (95)
T 2cuf_A 82 NI 83 (95)
T ss_dssp HC
T ss_pred hc
Confidence 63
No 41
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.67 E-value=4.4e-18 Score=107.68 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=43.0
Q ss_pred CCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHH
Q psy3734 66 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRK 132 (158)
Q Consensus 66 rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~ 132 (158)
++.++.||.||..|+..||..|..++||+..++.+||..++|++. +|++|||||| +++
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~---------qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPL---------QVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHH---------HHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHH---------HHHHHHHHHHhccC
Confidence 457789999999999999999999999999999999966664444 8999999999 653
No 42
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=7.9e-18 Score=110.36 Aligned_cols=59 Identities=19% Similarity=0.023 Sum_probs=51.0
Q ss_pred CCCCCCCCHHHHHHHHhcccc-CCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 69 RRYRTTFTSFQLEELEKAFSR-THYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 69 rR~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
++.||.||..|+..||..|.. ++||+...+.+||..++|++ . +|+||||||| +++|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~--------~-qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTE--------E-QTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCH--------H-HHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCH--------H-HHHHHHHHHHHHHHHhcc
Confidence 467899999999999999994 99999999999996655444 4 8999999999 8888764
No 43
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.67 E-value=3.7e-18 Score=107.80 Aligned_cols=57 Identities=46% Similarity=0.548 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 71 YRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 71 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
.||.||..|+..||..|..++||+...+.+||..++|++ . +|++|||||| +++|+.+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~--------~-qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTE--------A-RIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCH--------H-HHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCH--------H-HHHHHhhhhhhhhHhhcc
Confidence 578999999999999999999999999999996665444 4 8999999999 8887654
No 44
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.67 E-value=5e-18 Score=105.90 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHH
Q psy3734 73 TTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKD 134 (158)
Q Consensus 73 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~ 134 (158)
|.||..|+..||..|..++||+..++.+||..+++++ . +|+||||||| ++||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~--------~-qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTD--------A-QVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCH--------H-HHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCH--------H-HhhHhhHHhhhhhccc
Confidence 6899999999999999999999999999996665444 4 8999999999 88875
No 45
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=9.9e-18 Score=109.58 Aligned_cols=59 Identities=20% Similarity=0.061 Sum_probs=50.8
Q ss_pred CCCCCCCCHHHHHHHHhcccc-CCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 69 RRYRTTFTSFQLEELEKAFSR-THYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 69 rR~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
.+.||.||..|+..||..|.. ++||+...+.+||..++|++ . +|+||||||| +|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~--------~-qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTE--------E-QTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCH--------H-HHHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCH--------H-HhhHHhHHHHHHHhhhcc
Confidence 357899999999999999996 99999999999996665444 4 8999999999 8888663
No 46
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=1e-17 Score=109.99 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=52.2
Q ss_pred CCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 68 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 68 ~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
.++.||.||..|+..||..|..++||+..++++||..++|+. . +|+||||||| ++||...
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~--------~-qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTK--------G-EIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCH--------H-HHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCH--------H-HeeeCChhHhHHHHhhCc
Confidence 467899999999999999999999999999999996665444 3 8999999999 8887654
No 47
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=3.7e-17 Score=107.05 Aligned_cols=62 Identities=11% Similarity=0.046 Sum_probs=52.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHhcccc---CCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHH
Q psy3734 65 KRKQRRYRTTFTSFQLEELEKAFSR---THYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDL 135 (158)
Q Consensus 65 ~rk~rR~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~ 135 (158)
.++.++.||.|+..|+..||..|.. ++||+..++++||..++|++. ||++|||||| ++++..
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~---------qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLL---------QVNNWFINARRRILQSG 69 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHH---------HHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHH---------HHHHHhHHHHhhccccc
Confidence 3456788999999999999999976 999999999999966665444 8999999999 777654
No 48
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.65 E-value=3.5e-17 Score=107.19 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=54.1
Q ss_pred CCCCCCCCHHHHHHHHhcc---ccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHHHhHh
Q psy3734 69 RRYRTTFTSFQLEELEKAF---SRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVYRRIE 141 (158)
Q Consensus 69 rR~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~~~~~ 141 (158)
||.||.||..|+..||..| ..++||+..++..||..++|+.. +|++|||||| +++++......+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~---------qV~~WFqNrR~r~kk~~~~~~~e 69 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVS---------QVSNWFGNKRIRYKKNIGKFQEE 69 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHH---------HHHHHHHHHHHHHHHCTTTTTTH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHH---------HHHHHHHHHHhhccccccccccc
Confidence 6789999999999999999 99999999999999966665444 8999999999 887776544433
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7e-18 Score=111.46 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=50.8
Q ss_pred CCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 69 RRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 69 rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
.+.||.||..|+..||..|..++||+..++++||..++| .+. +|+||||||| ++||+..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l--------~~~-qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGL--------STR-EVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCC--------CHH-HHHHHHHHHHHHSSSCCS
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC--------ChH-HhhHHhHHHhHHHHHhcc
Confidence 446899999999999999999999999999999955554 444 8999999999 8877654
No 50
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=2.4e-17 Score=105.97 Aligned_cols=56 Identities=16% Similarity=0.062 Sum_probs=49.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHhcccc-CCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh
Q psy3734 65 KRKQRRYRTTFTSFQLEELEKAFSR-THYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT 129 (158)
Q Consensus 65 ~rk~rR~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR 129 (158)
.++.+|.||.|+.+|+..|+..|+. ++||+..+|+.||.+++|+.. +|+|||||||
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~---------~IqVWFQNrR 60 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKH---------TIIKFFQNQR 60 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHH---------HHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHH---------HHHHhhccce
Confidence 3467889999999999999999999 999999999999966665443 8999999999
No 51
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3e-17 Score=108.18 Aligned_cols=57 Identities=12% Similarity=0.051 Sum_probs=48.7
Q ss_pred CCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 71 YRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 71 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
.|+.||..|+..||..|..++||+..++.+||..++| .+. +|+||||||| +++|+..
T Consensus 10 kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l--------~~~-qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKM--------TRR-EIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCC--------CHH-HHHHHHHHHTTHHHHSSC
T ss_pred CCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCC--------CHH-HhhHhhHHHHHHHHHhhh
Confidence 4557999999999999999999999999999955554 444 8999999999 8877654
No 52
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=8.1e-18 Score=114.50 Aligned_cols=57 Identities=14% Similarity=0.026 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHHHh
Q psy3734 74 TFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVYRR 139 (158)
Q Consensus 74 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~~~ 139 (158)
.||.+|+.+||..|..++||+..+|.+||..|+ |++. ||+||||||| ||+|+.....
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lg--------Lte~-qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTK--------LTRR-EIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTC--------CCHH-HHHHHHHHHHHHHHSCCSCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC--------cChH-HCeecccccchHHHHHHHHhh
Confidence 799999999999999999999999999995555 4444 8999999999 8888765444
No 53
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.64 E-value=1.4e-17 Score=124.54 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=49.2
Q ss_pred CCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHH
Q psy3734 66 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKD 134 (158)
Q Consensus 66 rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~ 134 (158)
.+.||.||.||..|+..||..|..++||+..+|++||..++ |.+. +|+||||||| ||||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--------L~~~-qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLN--------MEKE-VIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--------CCHH-HHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHC--------CChH-HhhHhhHHhhhhhhcc
Confidence 46788999999999999999999999999999999995555 4444 8999999999 88775
No 54
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.63 E-value=1.8e-17 Score=114.95 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=50.8
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhc----------cchhhccc---ccCCCceeeeccchh-
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFK----------PFLLMKLD---LVKNRPVQTYVAYGT- 129 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~----------~~~~~~l~---~~~~r~vKiWfQnrR- 129 (158)
..++.||.||.||..|+..||..|+.++||+...|++||..++ ++....++ +.+. +|+|||||||
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~-qV~vWFqNRR~ 83 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV-RVYNWFANRRK 83 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHH-HHHHHHHHHHH
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcc-eeeeccHHHHH
Confidence 3567788999999999999999999999999999999997732 12222255 6666 9999999999
Q ss_pred hHHHHHH
Q psy3734 130 GRKKDLV 136 (158)
Q Consensus 130 ~~~k~~~ 136 (158)
+.+++..
T Consensus 84 k~k~k~~ 90 (99)
T 1lfb_A 84 EEAFRHK 90 (99)
T ss_dssp TTSCCC-
T ss_pred HHHHhch
Confidence 5555543
No 55
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.62 E-value=2e-17 Score=122.02 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=49.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHH
Q psy3734 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKD 134 (158)
Q Consensus 65 ~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~ 134 (158)
.+++||.||.||..|+..||..|..++||+...+.+||..+++ .+. +|+||||||| ||||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L--------~~~-qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNL--------EKE-VVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTC--------CHH-HHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCC--------Chh-hchhhhHhhhhhhhcc
Confidence 4567789999999999999999999999999999999955554 444 8999999999 88775
No 56
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.62 E-value=9e-17 Score=108.51 Aligned_cols=65 Identities=20% Similarity=0.176 Sum_probs=54.3
Q ss_pred CCCCCCCCHHHHHHHHhcc---ccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHHHhHhh
Q psy3734 69 RRYRTTFTSFQLEELEKAF---SRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVYRRIEV 142 (158)
Q Consensus 69 rR~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~~~~~~ 142 (158)
||.|+.|+..|+..||..| ..++||+..++.+||..++|+. . ||++|||||| +++++......+.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~--------~-qV~~WFqNrR~r~kk~~~~~~~~~ 70 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITV--------S-QVSNWFGNKRIRYKKNIGKFQEEA 70 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCH--------H-HHHHHHHHHHHHHHHCGGGGHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCH--------H-HHHHHHHHHHHHhhhccccccccc
Confidence 6789999999999999999 9999999999999996665444 3 8999999999 8888776554443
No 57
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.62 E-value=2.5e-17 Score=123.76 Aligned_cols=63 Identities=21% Similarity=0.239 Sum_probs=46.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 65 ~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
.++.||.||.||..|+..||..|..++||+..+|.+||..++ |.+. +|+||||||| ||||+..
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~--------L~~~-qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQ--------LEKE-VVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--------CCHH-HHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC--------CChh-hhhhhhHHhhHHHhhccC
Confidence 456788999999999999999999999999999999995555 4444 8999999999 8888664
No 58
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=4.8e-17 Score=103.88 Aligned_cols=57 Identities=14% Similarity=0.046 Sum_probs=50.1
Q ss_pred CCCCCCCCCHHHHHHHHhcc---ccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHH
Q psy3734 68 QRRYRTTFTSFQLEELEKAF---SRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKK 133 (158)
Q Consensus 68 ~rR~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k 133 (158)
.++.|+.|+..|+..||..| ..++||+..++.+||..++|++. ||++|||||| +++|
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~---------qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVS---------QVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHH---------HHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHH---------HHHHHHHHHHHHhcc
Confidence 56789999999999999999 99999999999999966664444 8999999999 7765
No 59
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.59 E-value=1.8e-16 Score=101.67 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=44.8
Q ss_pred CHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHH
Q psy3734 76 TSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDL 135 (158)
Q Consensus 76 t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~ 135 (158)
|.+|+.+||..|..++||+..++.+||..++|+.. +|++|||||| +||+..
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~---------qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARS---------EIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHH---------HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHH---------HhhHhcccchhhhhccC
Confidence 68999999999999999999999999966655444 8999999999 888754
No 60
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.59 E-value=1.1e-16 Score=118.67 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=52.5
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHH
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKK 133 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k 133 (158)
...++||.||.||..|+..||..|..++||+..++.+||..+++ .+. +|+||||||| |+||
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L--------~~~-qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNY--------DRE-VVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTS--------CHH-HHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCC--------CHH-HhHHHHHHHHhccCC
Confidence 34567789999999999999999999999999999999965554 444 8999999999 7765
No 61
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.59 E-value=4e-16 Score=104.76 Aligned_cols=62 Identities=10% Similarity=0.104 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCHHHHHHHHhcccc---CCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 66 RKQRRYRTTFTSFQLEELEKAFSR---THYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 66 rk~rR~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
.+.++.|+.|+..|+..||..|.. ++||+..++++||..++|++. ||++|||||| ++++...
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~---------qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLL---------QISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHH---------HHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHH---------HhhHHhhhhHhhhcHHHH
Confidence 346778999999999999999877 699999999999966665444 8999999999 6665543
No 62
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=5e-17 Score=106.48 Aligned_cols=58 Identities=21% Similarity=0.147 Sum_probs=48.6
Q ss_pred CCCCCCCCHHHHHHHHhcc-ccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHH
Q psy3734 69 RRYRTTFTSFQLEELEKAF-SRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDL 135 (158)
Q Consensus 69 rR~Rt~ft~~Ql~~Le~~F-~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~ 135 (158)
.+.++.++..|+.+||..| ..++||+..+|++||..++ |.+. +|+||||||| +||+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~--------l~e~-qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLD--------WSVR-KIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTT--------CCHH-HHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC--------CChh-hcchhhhhcccCCCCCC
Confidence 3456678899999999999 9999999999999995555 4444 8999999999 888654
No 63
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.58 E-value=3.2e-16 Score=116.60 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=51.6
Q ss_pred CCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHH
Q psy3734 66 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKD 134 (158)
Q Consensus 66 rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~ 134 (158)
.+++|.||.|+..|+..||..|..++||+...+.+||..+++ .+. +|+||||||| ||||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L--------~~~-qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGL--------EKD-VVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTC--------CHH-HHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCC--------Chh-heeeccccccccccCC
Confidence 456779999999999999999999999999999999955554 433 8999999999 77763
No 64
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.57 E-value=5.2e-16 Score=104.91 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=49.3
Q ss_pred CCCCCCCCCCHHHHHHHHhcccc---CCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHH
Q psy3734 67 KQRRYRTTFTSFQLEELEKAFSR---THYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRK 132 (158)
Q Consensus 67 k~rR~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~ 132 (158)
++++.|+.|+..|+..||..|.. ++||+..++++||..++|+.. ||++|||||| +||
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~---------qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRI---------QIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHH---------HHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHH---------HHHHHHHHHHhhcc
Confidence 45567899999999999999999 999999999999966664443 8999999999 665
No 65
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.57 E-value=4e-16 Score=98.33 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=46.8
Q ss_pred CCCCCHHHHHHHHhcccc---CCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHH
Q psy3734 72 RTTFTSFQLEELEKAFSR---THYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKK 133 (158)
Q Consensus 72 Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k 133 (158)
|+.||..|+..||..|.. ++||+..++++||..++|++. +|++|||||| ++||
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~---------qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRI---------QIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHH---------HHHHHHHHHHHHHHC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHH---------HHHHHHHHHHccccc
Confidence 578999999999999999 999999999999966665444 8999999999 7765
No 66
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.6e-16 Score=105.77 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 74 TFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 74 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
.||..|+..||..|..++||+..++++||..++| .+. +|+||||||| ||++...
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l--------~~~-qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKL--------SRR-EIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTC--------CHH-HHHHHHHHHHHHHHTSCS
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCC--------CHH-hccHhhHhHHHHHHHHhH
Confidence 3999999999999999999999999999955554 444 8999999999 7766554
No 67
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.56 E-value=5.2e-16 Score=104.12 Aligned_cols=58 Identities=17% Similarity=0.128 Sum_probs=49.2
Q ss_pred CCCCCCHHHHHHHHhcccc---CCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHH
Q psy3734 71 YRTTFTSFQLEELEKAFSR---THYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVY 137 (158)
Q Consensus 71 ~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~ 137 (158)
.|+.|+..|+..||..|.. ++||+..++.+||..++|+.. ||++|||||| ++++....
T Consensus 5 rr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~---------qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 5 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRI---------QIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHH---------HHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHH---------HcccccHHHHccccccccC
Confidence 4556999999999999999 999999999999966664444 8999999999 88776543
No 68
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.56 E-value=1.8e-16 Score=103.02 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 73 TTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 73 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
..+|..|+.+||..|..++||+...|.+||..++ |.+. +|+||||||| ||||+..
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~--------Lte~-qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLK--------LTET-QVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTT--------CCHH-HHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC--------CChh-heeecchhhhhhhhhhhh
Confidence 4689999999999999999999999999995555 4444 8999999999 8887654
No 69
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.54 E-value=6.3e-16 Score=115.77 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=49.0
Q ss_pred cCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 65 ~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
..+.||.||.||..|+..||..|..++||+...|++||..++|++. +|+||||||| ++++...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~---------qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELS---------TVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHH---------HHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHH---------HhhhcChhhhccccccCC
Confidence 4457889999999999999999999999999999999966665444 8999999999 6666543
No 70
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.4e-15 Score=97.41 Aligned_cols=53 Identities=8% Similarity=-0.050 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchhhHHH
Q psy3734 72 RTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGTGRKK 133 (158)
Q Consensus 72 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR~~~k 133 (158)
+..++..|+..||..|..++||+..+|.+||..++| .+. +|+|||||||.+++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L--------~e~-qVqvWFqNRRak~~ 59 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNL--------PLD-VVKKWFEKMQAGQI 59 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTC--------CHH-HHHHHHHHHHHTCS
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCc--------Chh-hcCcchhcccCCCC
Confidence 445679999999999999999999999999955554 444 89999999994433
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.50 E-value=9.8e-16 Score=98.03 Aligned_cols=47 Identities=21% Similarity=0.149 Sum_probs=39.7
Q ss_pred HHHHHHHhcc-ccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHH
Q psy3734 78 FQLEELEKAF-SRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKK 133 (158)
Q Consensus 78 ~Ql~~Le~~F-~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k 133 (158)
.|+.+||..| ..++||+...|.+||..++ |++. |||||||||| ++|+
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~--------Lter-QVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLD--------WDVR-SIQRWFRQRRNQEKP 58 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHC--------SCHH-HHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhC--------CCHH-HHHHHHHHHHhccCC
Confidence 4799999999 6799999999999995554 5544 8999999999 7765
No 72
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.48 E-value=1.8e-15 Score=116.32 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=48.3
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccc--------hhhc-----ccccCCCceeeeccchhh
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPF--------LLMK-----LDLVKNRPVQTYVAYGTG 130 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~--------~~~~-----l~~~~~r~vKiWfQnrR~ 130 (158)
..++.||.||.|+..|+..||+.|..++||+...|++||..++.. ++.. -.+++. +|++||||||+
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~-~V~~WFqNRR~ 189 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV-RVYNWFANRRK 189 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHH-HHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCcc-ccchhchhhhh
Confidence 346778999999999999999999999999999999999776611 0100 004445 89999999993
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.39 E-value=3.5e-14 Score=91.54 Aligned_cols=55 Identities=9% Similarity=0.051 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHhccc---cCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHHH
Q psy3734 74 TFTSFQLEELEKAFS---RTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLVY 137 (158)
Q Consensus 74 ~ft~~Ql~~Le~~F~---~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~~ 137 (158)
.|+.+|+..|+..|. .++||+..++++||..++++.. ||++|||||| +++|....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~---------qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTIL---------QVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHH---------HHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHH---------HhhhhhHHHHHHHhHHHHH
Confidence 699999999999999 9999999999999966665444 8999999999 77765543
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.38 E-value=4e-14 Score=110.38 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=51.5
Q ss_pred CcCCCCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhcc--------chhh--cc---cccCCCceeeeccchhh
Q psy3734 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKP--------FLLM--KL---DLVKNRPVQTYVAYGTG 130 (158)
Q Consensus 64 ~~rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~--------~~~~--~l---~~~~~r~vKiWfQnrR~ 130 (158)
..++.||.||.|+..|+..||..|..++||+..+|++||..++. +++. .| .+++. ||++||||||+
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~-~V~~WFqNRR~ 216 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEV-RVYNWFANRRK 216 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHH-HHHHHHHHHHT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHH-HHHHHhHHhhh
Confidence 56778999999999999999999999999999999999988762 1221 11 24555 99999999994
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.11 E-value=4.3e-12 Score=105.28 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=48.0
Q ss_pred CCCCCCCCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHH
Q psy3734 68 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRK 132 (158)
Q Consensus 68 ~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~ 132 (158)
.++.++.|+..|+.+||+.|+.++||+..+|++||.+++ |++. |||||||||| |+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~--------l~~~-qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCG--------ITPL-QVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHT--------SCHH-HHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHC--------cCHH-HhhHhhhhcccccC
Confidence 345678999999999999999999999999999995555 4444 8999999999 654
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.06 E-value=3.5e-11 Score=81.45 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHhcccc---CCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchh-hHHHHHH
Q psy3734 73 TTFTSFQLEELEKAFSR---THYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGT-GRKKDLV 136 (158)
Q Consensus 73 t~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR-~~~k~~~ 136 (158)
..|+..++..|+..|.. ++||+..++.+||..++|++. ||++||||+| ++++...
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~---------QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTL---------QVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHH---------HHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHH---------HHHHHHHHHHHHhhhHHH
Confidence 46899999999999977 999999999999966665544 8999999999 6655544
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.4e-11 Score=79.52 Aligned_cols=45 Identities=9% Similarity=0.001 Sum_probs=38.3
Q ss_pred HHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeeccchhh
Q psy3734 77 SFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVAYGTG 130 (158)
Q Consensus 77 ~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQnrR~ 130 (158)
.+|+..||..|..+++|+..++..||..++ |.+. .|||||||||.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lg--------L~~~-VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVG--------LPQE-FVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHT--------CCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhC--------CCHH-HHHHHHhhccc
Confidence 468999999999999999999999995555 4444 79999999884
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.94 E-value=7.7e-11 Score=67.06 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=18.8
Q ss_pred Cceeeeccchh-hHHHHHHHHhH
Q psy3734 119 RPVQTYVAYGT-GRKKDLVYRRI 140 (158)
Q Consensus 119 r~vKiWfQnrR-~~~k~~~~~~~ 140 (158)
||||||||||| ||||+......
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 69999999999 99999886443
No 79
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=85.13 E-value=0.027 Score=41.17 Aligned_cols=31 Identities=6% Similarity=-0.117 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCHHHHHHHHhccccCCCCChh
Q psy3734 66 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVF 96 (158)
Q Consensus 66 rk~rR~Rt~ft~~Ql~~Le~~F~~~~yp~~~ 96 (158)
++.+|.||.|+..|++.|+..|+.++||+..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 4567899999999999999999999998643
No 80
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus}
Probab=70.95 E-value=0.21 Score=35.54 Aligned_cols=43 Identities=12% Similarity=0.247 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeecc
Q psy3734 74 TFTSFQLEELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVA 126 (158)
Q Consensus 74 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQ 126 (158)
.++.+.+..|...-+..++|.++.+.++| ..+.+.=+|+.|.|
T Consensus 18 tl~eeeL~rLl~lSheik~P~IpLksel~----------vEiLEkG~VRfWlQ 60 (142)
T 2jtd_A 18 SHMEEEMKRLLALSQEHKFPTVPTKSELA----------VEILEKGQVRFWMQ 60 (142)
T ss_dssp ---CCCSHHHHHCCCCCCCSSCSSSCEEE----------EEEETTTEEEEEEE
T ss_pred eeCHHHHHHHHHhhhhccCCcccchhhhh----------HHHHhcCcEEEEEE
Confidence 45666777888888899999999999988 33333338999999
No 81
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.69 E-value=1.3 Score=28.09 Aligned_cols=37 Identities=8% Similarity=-0.028 Sum_probs=30.2
Q ss_pred HHHHhccccCCCCChhhhhhhhhhhccchhhcccccCCCceeeecc
Q psy3734 81 EELEKAFSRTHYPDVFTSTGSIAVFKPFLLMKLDLVKNRPVQTYVA 126 (158)
Q Consensus 81 ~~Le~~F~~~~yp~~~~r~~LA~~l~~~~~~~l~~~~~r~vKiWfQ 126 (158)
+.|+..|...+.+....-..|+.+..++-- +||.||.
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~q---------qvkdwFa 55 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQ---------QVLDWFD 55 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHH---------HHHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHH---------HHHHHHH
Confidence 679999999999999999999977654333 7899986
Done!