RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3734
(158 letters)
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 48.2 bits (116), Expect = 1e-08
Identities = 17/29 (58%), Positives = 18/29 (62%)
Query: 69 RRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
RR RTTFT QLEELEK F + YP
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEE 29
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 43.8 bits (104), Expect = 7e-07
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 68 QRRYRTTFTSFQLEELEKAFSRTHYPDV 95
+RR RT+FT QLEELEK F + YP
Sbjct: 1 KRRKRTSFTPEQLEELEKEFQKNPYPSR 28
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved
in the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 42.6 bits (101), Expect = 2e-06
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 69 RRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
RR RT FT QLEELEK F + YP
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREE 29
>gnl|CDD|240472 cd12892, SPRY_PRY_TRIM18, PRY/SPRY domain of TRIM18/MID1, also
known as FXY or RNF59. This domain, consisting of the
distinct N-terminal PRY subdomain followed by the SPRY
subdomain, is at the C-terminus of the overall domain
architecture of MID1 (also known as FXY, RNF59, TRIM18)
gene represented by a RING finger domain (RING), two
B-box motifs (BBOX), coiled-coil C-terminal to Bbox
domain (BBC) and fibronectin type 3 domain (FN3).
Mutations in the human MID1 gene result in X-linked
Opitz G/BBB syndrome (OS), a disorder affecting
development of midline structures, causing craniofacial,
urogenital, gastrointestinal and cardiovascular
abnormalities. A unique MID1 gene mutation located in a
variable loop in the SPRY domain alters conformation of
the binding pocket and may affect the binding affinity
to the PRY/SPRY domain.
Length = 177
Score = 31.9 bits (72), Expect = 0.090
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTGSIAV 104
PK R+ + + + +E E + ++H P+ FTS GS V
Sbjct: 6 PKSAHRKLKVSHDNLTVERDETSSKKSHTPERFTSQGSYGV 46
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 30.1 bits (68), Expect = 0.33
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 58 EDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPD 94
+D +S PK K+RR T QL LE+ F YP
Sbjct: 45 QDGSSPPKSKRRR----TTDEQLMVLEREFEINPYPS 77
>gnl|CDD|240497 cd13739, SPRY_PRY_TRIM1, PRY/SPRY domain of tripartite
motif-binding protein 1 (TRIM1) or MID2. This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM1 (also known as MID2 or midline 2).
MID2 and its close homolog, TRIM18 (also known as MID1),
both contain a B30.2-like domain at their C-terminus and
a single fibronectin type III (FN3) motif between it and
their N-terminal RBCC domain. MID2 and MID1 coiled-coil
motifs mediate both homo- and heterodimerization, a
prerequisite for association of the rapamycin-sensitive
PP2A regulatory subunit Alpha 4 with microtubules.
Mutations in MID1 have shown to cause Opitz syndrome, a
disorder causing congenital anomalies such as cleft lip
and palate as well as heart defects.
Length = 168
Score = 29.3 bits (65), Expect = 0.62
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTSTG 100
PK ++ + + Q+E+ E + ++H P+ F+ TG
Sbjct: 5 PKMAHKKLKISNDGLQMEKDESSLKKSHTPERFSGTG 41
>gnl|CDD|237480 PRK13721, PRK13721, conjugal transfer ATP-binding protein TraC;
Provisional.
Length = 844
Score = 28.5 bits (64), Expect = 1.7
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 5 KLTNLILILSEYSRTGSYSHHSAEDSPSELSDLNRMGV 42
+L +I++L +Y+ G+Y + D PS L D RM V
Sbjct: 588 RLDEMIVLLDQYTANGTYGEYFNSDEPS-LRDDARMVV 624
>gnl|CDD|178439 PLN02847, PLN02847, triacylglycerol lipase.
Length = 633
Score = 27.9 bits (62), Expect = 2.8
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 5 KLTNLILILSEYSRTGSYSHHSAEDSPSELSDLNRMGVPSSGRGEEDVSEGEMEDYASLP 64
K T + SE S + H E+ LS+ +R+ + EE+V+EGE+ + L
Sbjct: 451 KTTKSVEHKSESSSSDGSGHDDEEEEEPLLSE-DRV---ITSSVEEEVTEGEL--WYELE 504
Query: 65 KRKQRRYRTTFTSFQLEELEKA 86
K QR + T Q +E E A
Sbjct: 505 KELQR--QETEVDAQAQEEEAA 524
>gnl|CDD|180917 PRK07279, dnaE, DNA polymerase III DnaE; Reviewed.
Length = 1034
Score = 26.9 bits (60), Expect = 5.3
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 30 SPSELSDLNRM------GVPSSGRGEEDVSE--GEMEDYASLPKRKQRRYRTTFTSFQLE 81
S S++ +M G G EE E ME +A + + + +FQL
Sbjct: 637 SKKNASEMQKMEEDFLQGALELGHSEEKARELFDRMEKFAGYGFNRSHAFAYSALAFQL- 695
Query: 82 ELEKAFSRTHYPDVF 96
A+ + HYP VF
Sbjct: 696 ----AYFKAHYPAVF 706
>gnl|CDD|180610 PRK06539, PRK06539, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 822
Score = 26.8 bits (59), Expect = 5.8
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 36 DLNRMGVPSSGRGEEDVSEGEMEDYASLPKRKQRRYRTTFT 76
DL +G+ + R E S+G++++ A++P + YRT+F
Sbjct: 665 DLKELGLWETVREEILRSQGDIQEIAAIPDEIKALYRTSFQ 705
>gnl|CDD|234913 PRK01175, PRK01175, phosphoribosylformylglycinamidine synthase I;
Provisional.
Length = 261
Score = 26.6 bits (59), Expect = 6.0
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 114 DLVKNRPVQTYVAYGTGRKKDLVYRRIEVEIKFIPNDLVIF 154
L+K Q VA+ GR +V+ E+ + I ND ++F
Sbjct: 148 KLLKKDVFQVPVAHAEGR---VVFSEEEILERLIENDQIVF 185
>gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3.
Length = 168
Score = 26.1 bits (58), Expect = 6.5
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 6 LTNLILILS---EYSRTGSYSHHSAEDSPSELSDLNRMGVPSSGRGEEDVSEGEME 58
L N+ LI + E+++ Y + E +P LN M V RGE+ + +G+ E
Sbjct: 75 LYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSE 130
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and
metabolism].
Length = 411
Score = 26.5 bits (59), Expect = 6.7
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 5 KLTNLILILSEYSRTGSYSHHSAEDSPSELSDLNRMGVPSSG 46
K N+ + +E G Y+ ++P ++ +G PS+
Sbjct: 261 KAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIGNPSNW 302
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.377
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,259,398
Number of extensions: 747189
Number of successful extensions: 642
Number of sequences better than 10.0: 1
Number of HSP's gapped: 641
Number of HSP's successfully gapped: 19
Length of query: 158
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 69
Effective length of database: 6,990,096
Effective search space: 482316624
Effective search space used: 482316624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)