RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3734
(158 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 50.6 bits (121), Expect = 7e-10
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 62 SLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDV 95
L R R+ R +T Q ELEK F Y
Sbjct: 7 WLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTR 40
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 49.2 bits (117), Expect = 1e-09
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 68 QRRYRTTFTSFQLEELEKAFSRTHYPDVF 96
QRR RT FTS QL++LE F R YPD+
Sbjct: 1 QRRQRTHFTSQQLQQLEATFQRNRYPDMS 29
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 47.6 bits (113), Expect = 6e-09
Identities = 20/28 (71%), Positives = 24/28 (85%)
Query: 67 KQRRYRTTFTSFQLEELEKAFSRTHYPD 94
KQRR RTTF++ QL+ELE+AF RT YPD
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPD 28
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 47.7 bits (113), Expect = 1e-08
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 69 RRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
R R T+ L +E F+ YPD
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAK 29
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 47.0 bits (111), Expect = 2e-08
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
K+R+ R FT Q ELE+ F + Y
Sbjct: 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPE 38
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 46.0 bits (109), Expect = 2e-08
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 70 RYRTTFTSFQLEELEKAFSRTHYPDVF 96
RYRT FT QL LEK F + +Y
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRP 27
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 45.9 bits (109), Expect = 3e-08
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 69 RRYRTTFTSFQLEELEKAFSRTHYPDVF 96
+R RT+FT Q+E LEK F RTHYPDVF
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVF 29
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 45.6 bits (108), Expect = 3e-08
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 67 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
K R RT QL L ++ PD
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALM 32
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 45.7 bits (108), Expect = 3e-08
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 69 RRYRTTFTSFQLEELEKAFSRTHYPDVF 96
R+ RT FT+ QL LE+ F + Y +
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIA 28
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 45.6 bits (108), Expect = 4e-08
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 69 RRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
R+ R ++ QL ELE+ ++ +
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDK 30
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 44.9 bits (106), Expect = 6e-08
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 69 RRYRTTFTSFQLEELEKAFSRTHYPDVF 96
RR RTTFTS Q+ ELE+ F + Y
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAP 29
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 44.5 bits (105), Expect = 1e-07
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 68 QRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
+R+ R F+ Q+ ELE+ F + Y
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPE 31
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 44.0 bits (104), Expect = 1e-07
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 72 RTTFTSFQLEELEKAFSRTHYPDVF 96
R T+T +Q ELEK F Y
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRR 25
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 42.5 bits (100), Expect = 4e-07
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 70 RYRTTFTSFQLEELEKAFSRTHYPDVFT 97
R RT F+S QL L++ F+ Y
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERR 28
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 42.5 bits (100), Expect = 5e-07
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 69 RRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
+ + F++ Q ELEK F Y
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPE 29
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 42.7 bits (100), Expect = 9e-07
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 66 RKQRRYRTTFTSFQLEELEKAFSRTHYPD 94
RT FT+ QL ELEK F Y
Sbjct: 25 GSPSGLRTNFTTRQLTELEKEFHFNKYLS 53
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 41.5 bits (97), Expect = 1e-06
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
+ ++R RT+ + LE F + P +
Sbjct: 5 VQARKRKRTSIENRVRWSLETMFLKCPKPSLQQ 37
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 39.5 bits (92), Expect = 5e-06
Identities = 7/25 (28%), Positives = 7/25 (28%)
Query: 72 RTTFTSFQLEELEKAFSRTHYPDVF 96
R FT Q L F P
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKE 26
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 39.5 bits (92), Expect = 7e-06
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 72 RTTFTSFQLEELEKAFSRTHYPDVFT 97
+++ + LE+ F R +
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKE 26
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 38.4 bits (89), Expect = 3e-05
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 69 RRYRTTFTSFQLEELEKAFSRT-HYPDVFT 97
T T Q+E LE F++ +PD T
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTT 31
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 37.6 bits (87), Expect = 3e-05
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 70 RYRTTFTSFQLEELEKAFSRTHYPDVFT 97
+ RTT + + LE+ F P
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQE 28
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 36.7 bits (84), Expect = 1e-04
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 72 RTTFTSFQLEELEKAFSRTHYPD 94
R + + L +A+ R P
Sbjct: 1 RFKWGPASQQILFQAYERQKNPS 23
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 33.1 bits (75), Expect = 0.003
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 53 SEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSR----THYPDVFT 97
S G S +R+RT FT+ Q E++ R D
Sbjct: 2 SSGSSGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVA 50
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 32.0 bits (72), Expect = 0.006
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 67 KQRRYRTTFTSFQLEELEKAFSRT-HYPDVFT 97
R RT + L L+ YPD
Sbjct: 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEA 37
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 30.7 bits (69), Expect = 0.013
Identities = 9/32 (28%), Positives = 10/32 (31%), Gaps = 3/32 (9%)
Query: 69 RRYRTTFTSFQLEELEKAF---SRTHYPDVFT 97
RR R F E L + F YP
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEA 33
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 30.7 bits (69), Expect = 0.013
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 72 RTTFTSFQLEELEKAFSRTHYPDVFT 97
RT+ + LEK+F P
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSED 27
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 28.9 bits (64), Expect = 0.062
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 64 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
P++ + + T+ QL L+ +F +
Sbjct: 5 PQKFKEK-----TAEQLRVLQASFLNSSVLTDEE 33
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 28.2 bits (63), Expect = 0.089
Identities = 3/32 (9%), Positives = 6/32 (18%), Gaps = 3/32 (9%)
Query: 69 RRYRTTFTSFQLEELEKAFSRTH---YPDVFT 97
+ R + + YP
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDE 34
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 26.6 bits (59), Expect = 0.27
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 76 TSFQLEELEKAFSR-THYPDVFT 97
T+ LEK F+ T +PD
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKR 23
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 25.9 bits (57), Expect = 0.60
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 69 RRYRTTFTSFQLEELEKAFS---RTHYPDVFT 97
R +R FT + LE F+ Y D
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKG 30
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 25.1 bits (55), Expect = 1.1
Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 70 RYRTTFTSFQLEELEKAFSR-THYPDVFT 97
+ + LEK F T YPD
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKR 31
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 25.1 bits (54), Expect = 1.9
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 4/33 (12%)
Query: 65 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 97
+R T QL L+ F + +
Sbjct: 4 GSSGKR----KTKEQLAILKSFFLQCQWARRED 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.377
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 579,917
Number of extensions: 25275
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 34
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.8 bits)