BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3735
(91 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 48/60 (80%), Gaps = 6/60 (10%)
Query: 5 SSGRGEEDVSEG----EMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
+SG VS+G E ++YA PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTR+
Sbjct: 59 ASGGTNSPVSDGNSDCEADEYA--PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRE 116
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/35 (85%), Positives = 34/35 (97%)
Query: 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
KRKQRRYRTTFTS+QLEELE+AF +THYPDVFTR+
Sbjct: 329 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTRE 363
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/35 (85%), Positives = 34/35 (97%)
Query: 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
KRKQRRYRTTFTS+QLEELE+AF +THYPDVFTR+
Sbjct: 325 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTRE 359
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/35 (85%), Positives = 34/35 (97%)
Query: 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
KRKQRRYRTTFTS+QLEELE+AF +THYPDVFTR+
Sbjct: 327 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTRE 361
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/35 (85%), Positives = 34/35 (97%)
Query: 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
KRKQRRYRTTFTS+QLEELE+AF +THYPDVFTR+
Sbjct: 212 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTRE 246
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus
purpuratus GN=ALX PE=2 SV=2
Length = 327
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/35 (85%), Positives = 34/35 (97%)
Query: 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
KRKQRRYRTTFTS+QLEELE+AF +THYPDVFTR+
Sbjct: 209 KRKQRRYRTTFTSYQLEELERAFCKTHYPDVFTRE 243
>sp|P47239|PAX7_MOUSE Paired box protein Pax-7 OS=Mus musculus GN=Pax7 PE=2 SV=2
Length = 503
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Query: 17 EMEDYASLP-KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
++E LP KRKQRR RTTFT+ QLEELEKAF RTHYPD++TR+
Sbjct: 202 DVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTRE 246
>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3
Length = 520
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Query: 17 EMEDYASLP-KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
++E LP KRKQRR RTTFT+ QLEELEKAF RTHYPD++TR+
Sbjct: 204 DVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTRE 248
>sp|P06601|PRD_DROME Segmentation protein paired OS=Drosophila melanogaster GN=prd PE=1
SV=1
Length = 613
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Query: 10 EEDVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
+ED+S+ E E +L KRKQRR RTTF++ QL+ELE+AF RT YPD++TR+
Sbjct: 195 DEDISDCESEPGIAL-KRKQRRCRTTFSASQLDELERAFERTQYPDIYTRE 244
>sp|P09083|GSBN_DROME Protein gooseberry-neuro OS=Drosophila melanogaster GN=gsb-n PE=1
SV=2
Length = 449
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Query: 10 EEDVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
+ D+S+ E E L KRKQRR RTTFT+ QLE LE+AFSRT YPDV+TR+
Sbjct: 164 DSDISDTESEPGIPL-KRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTRE 213
>sp|Q28DP6|PAX3_XENTR Paired box protein Pax-3 OS=Xenopus tropicalis GN=pax3 PE=2 SV=2
Length = 461
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 4/59 (6%)
Query: 3 VPSSGRGEEDVSEGEMEDYASLP-KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
P+S EE +++ LP KRKQRR RTTFT+ QLEELE+AF RTHYPD++TR+
Sbjct: 172 APASPESEEG---SDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTRE 227
>sp|Q0IH87|PAX3B_XENLA Paired box protein Pax-3-B OS=Xenopus laevis GN=pax3-b PE=2 SV=2
Length = 483
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 4/59 (6%)
Query: 3 VPSSGRGEEDVSEGEMEDYASLP-KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
P+S EE +++ LP KRKQRR RTTFT+ QLEELE+AF RTHYPD++TR+
Sbjct: 195 APASPESEEG---SDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTRE 250
>sp|P24610|PAX3_MOUSE Paired box protein Pax-3 OS=Mus musculus GN=Pax3 PE=1 SV=2
Length = 479
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Query: 17 EMEDYASLP-KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
+++ LP KRKQRR RTTFT+ QLEELE+AF RTHYPD++TR+
Sbjct: 206 DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTRE 250
>sp|Q645N4|PAX3A_XENLA Paired box protein Pax-3-A OS=Xenopus laevis GN=pax3-a PE=2 SV=1
Length = 484
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Query: 17 EMEDYASLP-KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
+++ LP KRKQRR RTTFT+ QLEELE+AF RTHYPD++TR+
Sbjct: 207 DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTRE 251
>sp|P23760|PAX3_HUMAN Paired box protein Pax-3 OS=Homo sapiens GN=PAX3 PE=1 SV=2
Length = 479
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Query: 17 EMEDYASLP-KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
+++ LP KRKQRR RTTFT+ QLEELE+AF RTHYPD++TR+
Sbjct: 206 DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTRE 250
>sp|Q90277|VSX1_CARAU Visual system homeobox 1 OS=Carassius auratus GN=vsx1 PE=1 SV=1
Length = 341
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 10 EEDVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRS 69
++D G+ D + KRK+RR+RT FTS QLEELEKAF HYPDV+ R+ + +
Sbjct: 129 DDDCLSGDRNDGKNSQKRKKRRHRTVFTSHQLEELEKAFHEAHYPDVYAREM--LAMKTE 186
Query: 70 MPGELCVAW 78
+P + W
Sbjct: 187 LPEDRIQVW 195
>sp|Q9NZR4|VSX1_HUMAN Visual system homeobox 1 OS=Homo sapiens GN=VSX1 PE=1 SV=2
Length = 365
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 17 EMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
+++ +L KRK+RR+RT FT+ QLEELEKAFS HYPDV+ R+
Sbjct: 152 DLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYARE 195
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
Length = 325
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 37/47 (78%)
Query: 14 SEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
S+ ++ D PK+K RR RTTFT++QL ELE+AF ++HYPDV++R+
Sbjct: 115 SDNKLSDDEQQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSRE 161
>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-a PE=2 SV=2
Length = 322
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 37/47 (78%)
Query: 14 SEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
S+ ++ D PK+K RR RTTFT++QL ELE+AF ++HYPDV++R+
Sbjct: 115 SDNKLSDDEQQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSRE 161
>sp|O42358|RX3_DANRE Retinal homeobox protein Rx3 OS=Danio rerio GN=rx3 PE=2 SV=1
Length = 292
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 12 DVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
D G++ D + PK+K RR RTTFT+FQL ELE+AF ++HYPDV++R+
Sbjct: 90 DADGGKLSDDEN-PKKKHRRNRTTFTTFQLHELERAFEKSHYPDVYSRE 137
>sp|O14813|PHX2A_HUMAN Paired mesoderm homeobox protein 2A OS=Homo sapiens GN=PHOX2A PE=1
SV=2
Length = 284
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 17/76 (22%)
Query: 2 GVPSSGRGEEDVSEGEMED-----YASLP------------KRKQRRYRTTFTSFQLEEL 44
G P G + + G + D Y+++P KRKQRR RTTFTS QL+EL
Sbjct: 46 GPPCPALGSSNCALGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKEL 105
Query: 45 EKAFSRTHYPDVFTRQ 60
E+ F+ THYPD++TR+
Sbjct: 106 ERVFAETHYPDIYTRE 121
>sp|Q26602|SMOX3_SCHMA Homeobox protein SMOX-3 (Fragment) OS=Schistosoma mansoni
GN=SMOX-3 PE=2 SV=1
Length = 288
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
KRKQRR RTTFTS QL+ELE+AF THYPD++TR+
Sbjct: 1 KRKQRRIRTTFTSLQLKELERAFQETHYPDIYTRE 35
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A OS=Mus musculus GN=Phox2a PE=2
SV=1
Length = 280
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 17/76 (22%)
Query: 2 GVPSSGRGEEDVSEGEMED-----YASLP------------KRKQRRYRTTFTSFQLEEL 44
G P G + + G + D Y+++P KRKQRR RTTFTS QL+EL
Sbjct: 46 GPPCPALGSSNCALGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKEL 105
Query: 45 EKAFSRTHYPDVFTRQ 60
E+ F+ THYPD++TR+
Sbjct: 106 ERVFAETHYPDIYTRE 121
>sp|Q9IAL2|VSX1_CHICK Visual system homeobox 1 OS=Gallus gallus GN=VSX1 PE=2 SV=1
Length = 350
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 12 DVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMP 71
D SE +M AS KRK+RR+RT FT+ QLEELEKAF+ HYPDV+ R+ + + +P
Sbjct: 142 DASELKMP--ASQIKRKKRRHRTVFTAHQLEELEKAFNEAHYPDVYAREM--LAVKTELP 197
Query: 72 GELCVAWTHHLNAAF 86
+ W + A +
Sbjct: 198 EDRIQVWFQNRRAKW 212
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A OS=Rattus norvegicus GN=Phox2a
PE=2 SV=1
Length = 281
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 17/76 (22%)
Query: 2 GVPSSGRGEEDVSEGEMED-----YASLP------------KRKQRRYRTTFTSFQLEEL 44
G P G + + G + D Y+++P KRKQRR RTTFTS QL+EL
Sbjct: 46 GPPCPALGSSNCALGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKEL 105
Query: 45 EKAFSRTHYPDVFTRQ 60
E+ F+ THYPD++TR+
Sbjct: 106 ERVFAETHYPDIYTRE 121
>sp|Q9GMA3|VSX1_BOVIN Visual system homeobox 1 OS=Bos taurus GN=VSX1 PE=2 SV=1
Length = 365
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
KRK+RR+RT FT+ QLEELEKAFS HYPDV+ R+
Sbjct: 161 KRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYARE 195
>sp|P09082|GSB_DROME Protein gooseberry OS=Drosophila melanogaster GN=gsb PE=2 SV=1
Length = 427
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 9 GEEDVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
G ED SE + E L KRKQRR RTTF++ Q++ LE+ F+RT YPDV+TR+
Sbjct: 166 GSEDESEDDAEPSVQL-KRKQRRSRTTFSNDQIDALERIFARTQYPDVYTRE 216
>sp|O42250|VSX1_DANRE Visual system homeobox 1 OS=Danio rerio GN=vsx1 PE=1 SV=2
Length = 344
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAW 78
KRK+RR+RT FTS QLEELEKAF+ HYPDV+ R+ + + +P + W
Sbjct: 148 KRKKRRHRTVFTSHQLEELEKAFNEAHYPDVYAREM--LAMKTELPEDRIQVW 198
>sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx OS=Homo sapiens GN=RAX PE=1 SV=2
Length = 346
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 38/52 (73%), Gaps = 6/52 (11%)
Query: 9 GEEDVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
GE +SE E PK+K RR RTTFT++QL ELE+AF ++HYPDV++R+
Sbjct: 122 GEAKLSEEEQ------PKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSRE 167
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
K K+RR RTTFTS+QLEELEK F +THYPDV+ R+
Sbjct: 197 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYARE 231
>sp|O35690|PHX2B_MOUSE Paired mesoderm homeobox protein 2B OS=Mus musculus GN=Phox2b PE=1
SV=1
Length = 314
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
KRKQRR RTTFTS QL+ELE+ F+ THYPD++TR+
Sbjct: 95 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTRE 129
>sp|Q99453|PHX2B_HUMAN Paired mesoderm homeobox protein 2B OS=Homo sapiens GN=PHOX2B PE=1
SV=2
Length = 314
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
KRKQRR RTTFTS QL+ELE+ F+ THYPD++TR+
Sbjct: 95 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTRE 129
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
K K+RR RTTFTS+QLEELEK F +THYPDV+ R+
Sbjct: 199 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYARE 233
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
K K+RR RTTFTS+QLEELEK F +THYPDV+ R+
Sbjct: 211 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYARE 245
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 37/49 (75%), Gaps = 6/49 (12%)
Query: 12 DVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
D ++GE PK+K RR RTTFT++QL ELE+AF ++HYPDV++R+
Sbjct: 126 DSADGEQ------PKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSRE 168
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 12 DVSEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
D +G+ D PK+K RR RTTFT++QL ELE+AF ++HYPDV++R+
Sbjct: 106 DGGDGKPSDEEQ-PKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSRE 153
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 32/36 (88%)
Query: 25 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
PK+K RR RTTFT++QL ELE+AF ++HYPDV++R+
Sbjct: 132 PKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSRE 167
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 32/36 (88%)
Query: 25 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
PK+K RR RTTFT++QL ELE+AF ++HYPDV++R+
Sbjct: 133 PKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSRE 168
>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
Length = 327
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 32/36 (88%)
Query: 25 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
PK+K RR RTTFT++QL ELE+AF ++HYPDV++R+
Sbjct: 131 PKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSRE 166
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 32/36 (88%)
Query: 25 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
PK+K RR RTTFT++QL ELE+AF ++HYPDV++R+
Sbjct: 138 PKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSRE 173
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%), Gaps = 7/60 (11%)
Query: 5 SSGRGEEDVS----EGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
SS +GE+ S EG+ ++ A K+K RR RTTFT++QL ELE+AF ++HYPDV++R+
Sbjct: 503 SSEQGEKITSGSDDEGQDDNCA---KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSRE 559
>sp|Q91V10|VSX1_MOUSE Visual system homeobox 1 OS=Mus musculus GN=Vsx1 PE=2 SV=1
Length = 363
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 30/37 (81%)
Query: 24 LPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
L KRK+RR+RT FT+ QLEELEKAF HYPDV+ R+
Sbjct: 166 LGKRKKRRHRTVFTAHQLEELEKAFGEAHYPDVYARE 202
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
Length = 228
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 32/36 (88%)
Query: 25 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
PK+K RR RTTFT++QL ELE+AF ++HYPDV++R+
Sbjct: 32 PKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSRE 67
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
SV=2
Length = 343
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
K K+RR RTTF++FQLEELEK F +THYPDV+ R+
Sbjct: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYARE 184
>sp|O70137|ALX3_MOUSE Homeobox protein aristaless-like 3 OS=Mus musculus GN=Alx3 PE=2
SV=1
Length = 343
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
K K+RR RTTF++FQLEELEK F +THYPDV+ R+
Sbjct: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYARE 184
>sp|Q15699|ALX1_HUMAN ALX homeobox protein 1 OS=Homo sapiens GN=ALX1 PE=1 SV=2
Length = 326
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 38/51 (74%), Gaps = 5/51 (9%)
Query: 15 EGEMEDY-----ASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
+GE+++ +++ K+RR+RTTFTS QLEELEK F +THYPDV+ R+
Sbjct: 113 KGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVRE 163
>sp|Q91574|ALX1_XENLA ALX homeobox protein 1 OS=Xenopus laevis GN=alx1 PE=2 SV=1
Length = 335
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 22 ASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
+++ K+RR+RTTFTS QLEELEK F +THYPDV+ R+
Sbjct: 134 SNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVRE 172
>sp|Q8C8B0|ALX1_MOUSE ALX homeobox protein 1 OS=Mus musculus GN=Alx1 PE=1 SV=1
Length = 326
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 22 ASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
+++ K+RR+RTTFTS QLEELEK F +THYPDV+ R+
Sbjct: 125 SNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVRE 163
>sp|Q63087|ALX1_RAT ALX homeobox protein 1 OS=Rattus norvegicus GN=Alx1 PE=2 SV=1
Length = 326
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 22 ASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
+++ K+RR+RTTFTS QLEELEK F +THYPDV+ R+
Sbjct: 125 SNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVRE 163
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 OS=Oryzias latipes GN=rx2 PE=2 SV=1
Length = 327
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 31/35 (88%)
Query: 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
K+K RR RTTFT++QL ELE+AF ++HYPDV++R+
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSRE 168
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,014,886
Number of Sequences: 539616
Number of extensions: 1209357
Number of successful extensions: 3312
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2961
Number of HSP's gapped (non-prelim): 370
length of query: 91
length of database: 191,569,459
effective HSP length: 61
effective length of query: 30
effective length of database: 158,652,883
effective search space: 4759586490
effective search space used: 4759586490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)