Query psy3735
Match_columns 91
No_of_seqs 120 out of 1090
Neff 9.2
Searched_HMMs 29240
Date Sat Aug 17 00:12:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh5_A ZF-HD homeobox family p 99.9 5.8E-26 2E-30 124.0 5.4 62 26-89 14-79 (80)
2 2dmt_A Homeobox protein BARH-l 99.9 9.2E-26 3.1E-30 123.2 6.2 64 25-90 13-76 (80)
3 2kt0_A Nanog, homeobox protein 99.9 2.1E-25 7.2E-30 122.8 7.3 64 25-90 18-81 (84)
4 1wh7_A ZF-HD homeobox family p 99.9 8.1E-26 2.8E-30 123.3 4.6 61 26-89 14-79 (80)
5 2cra_A Homeobox protein HOX-B1 99.9 2.5E-25 8.6E-30 118.7 5.3 64 25-90 3-66 (70)
6 2da3_A Alpha-fetoprotein enhan 99.9 2.5E-25 8.4E-30 121.4 4.8 64 25-90 13-76 (80)
7 2djn_A Homeobox protein DLX-5; 99.9 6.1E-25 2.1E-29 117.2 5.1 63 26-90 4-66 (70)
8 2da2_A Alpha-fetoprotein enhan 99.9 9.3E-25 3.2E-29 116.5 5.5 64 25-90 3-66 (70)
9 2dmu_A Homeobox protein goosec 99.9 7.8E-25 2.7E-29 116.8 5.1 63 26-90 4-66 (70)
10 2hdd_A Protein (engrailed home 99.9 5.1E-25 1.7E-29 114.7 3.7 59 29-89 3-61 (61)
11 2da1_A Alpha-fetoprotein enhan 99.9 8.1E-25 2.8E-29 116.7 4.4 64 25-90 3-66 (70)
12 2e1o_A Homeobox protein PRH; D 99.9 1.6E-24 5.4E-29 115.6 4.7 62 27-90 5-66 (70)
13 2cue_A Paired box protein PAX6 99.9 1.9E-24 6.6E-29 117.9 5.0 62 26-89 4-65 (80)
14 2dms_A Homeobox protein OTX2; 99.9 2.1E-24 7.3E-29 117.8 5.1 62 26-89 4-65 (80)
15 1nk2_P Homeobox protein VND; h 99.9 2.7E-24 9.3E-29 116.6 5.3 61 26-88 6-66 (77)
16 2h1k_A IPF-1, pancreatic and d 99.9 1.7E-24 5.8E-29 113.3 3.8 59 29-89 3-61 (63)
17 2vi6_A Homeobox protein nanog; 99.9 1.4E-24 4.9E-29 113.3 3.5 60 28-89 2-61 (62)
18 1ig7_A Homeotic protein MSX-1; 99.9 2.7E-24 9.1E-29 110.9 4.4 58 30-89 1-58 (58)
19 2dmq_A LIM/homeobox protein LH 99.9 4.1E-24 1.4E-28 116.6 5.1 62 26-89 4-65 (80)
20 1fjl_A Paired protein; DNA-bin 99.9 2.5E-24 8.4E-29 117.8 4.2 62 26-89 15-76 (81)
21 2r5y_A Homeotic protein sex co 99.9 5.2E-24 1.8E-28 118.1 5.4 63 26-90 25-87 (88)
22 1puf_A HOX-1.7, homeobox prote 99.9 5.8E-24 2E-28 115.3 5.3 62 26-89 10-71 (77)
23 1bw5_A ISL-1HD, insulin gene e 99.9 4E-24 1.4E-28 112.9 4.4 61 28-90 2-62 (66)
24 2l7z_A Homeobox protein HOX-A1 99.9 8.5E-24 2.9E-28 113.6 5.7 61 27-89 5-65 (73)
25 2da4_A Hypothetical protein DK 99.9 1.3E-24 4.4E-29 118.7 2.2 63 26-90 5-71 (80)
26 2m0c_A Homeobox protein arista 99.9 8.3E-24 2.9E-28 114.0 5.3 62 26-89 6-67 (75)
27 3a01_A Homeodomain-containing 99.9 8.2E-24 2.8E-28 118.4 5.4 62 26-89 14-75 (93)
28 3nar_A ZHX1, zinc fingers and 99.9 4.6E-24 1.6E-28 120.0 4.1 63 26-90 22-84 (96)
29 1jgg_A Segmentation protein EV 99.9 6.2E-24 2.1E-28 110.2 4.0 59 30-90 2-60 (60)
30 1yz8_P Pituitary homeobox 2; D 99.9 4E-24 1.4E-28 113.5 3.3 60 28-89 2-61 (68)
31 1ahd_P Antennapedia protein mu 99.9 3.5E-24 1.2E-28 113.7 3.0 59 29-89 2-60 (68)
32 1zq3_P PRD-4, homeotic bicoid 99.9 8.3E-24 2.9E-28 112.2 4.0 59 29-89 2-60 (68)
33 1ftt_A TTF-1 HD, thyroid trans 99.9 1.1E-23 3.8E-28 111.8 4.3 59 29-89 2-60 (68)
34 1b8i_A Ultrabithorax, protein 99.9 1.1E-23 3.7E-28 115.2 4.0 62 27-90 18-79 (81)
35 3rkq_A Homeobox protein NKX-2. 99.9 1.8E-23 6.2E-28 107.6 4.2 57 29-87 2-58 (58)
36 2k40_A Homeobox expressed in E 99.9 2.4E-23 8E-28 110.2 4.3 58 30-89 2-59 (67)
37 1akh_A Protein (mating-type pr 99.9 1.2E-23 4.1E-28 109.4 3.1 59 27-87 3-61 (61)
38 2ecc_A Homeobox and leucine zi 99.9 2.8E-23 9.4E-28 111.8 4.3 57 32-90 6-62 (76)
39 3a02_A Homeobox protein arista 99.9 1.7E-23 5.6E-28 108.6 3.3 57 32-90 2-58 (60)
40 2dn0_A Zinc fingers and homeob 99.9 4.4E-23 1.5E-27 111.6 4.7 59 30-90 9-67 (76)
41 2da5_A Zinc fingers and homeob 99.9 4.3E-23 1.5E-27 111.3 4.6 58 31-90 9-66 (75)
42 2ly9_A Zinc fingers and homeob 99.9 4.4E-23 1.5E-27 111.0 4.5 60 29-90 6-65 (74)
43 1e3o_C Octamer-binding transcr 99.9 2.6E-23 8.7E-28 126.4 4.1 62 27-90 99-160 (160)
44 1au7_A Protein PIT-1, GHF-1; c 99.9 3.7E-23 1.3E-27 124.0 4.0 63 26-90 84-146 (146)
45 3a03_A T-cell leukemia homeobo 99.9 3E-23 1E-27 106.3 3.1 54 34-89 2-55 (56)
46 1wi3_A DNA-binding protein SAT 99.9 8.5E-23 2.9E-27 106.7 4.2 58 26-85 4-62 (71)
47 2hi3_A Homeodomain-only protei 99.9 8.4E-23 2.9E-27 109.7 4.2 58 30-89 3-61 (73)
48 1uhs_A HOP, homeodomain only p 99.9 7.8E-23 2.7E-27 109.5 4.0 57 31-89 3-60 (72)
49 1b72_A Protein (homeobox prote 99.9 6.4E-23 2.2E-27 115.5 3.6 61 27-89 32-92 (97)
50 2cuf_A FLJ21616 protein; homeo 99.9 1.1E-22 3.7E-27 114.2 4.2 63 25-89 3-80 (95)
51 2xsd_C POU domain, class 3, tr 99.9 8.2E-23 2.8E-27 124.5 3.9 63 26-90 96-158 (164)
52 1x2n_A Homeobox protein pknox1 99.9 2.6E-22 8.8E-27 107.7 5.0 62 26-89 4-68 (73)
53 2cqx_A LAG1 longevity assuranc 99.9 1E-22 3.6E-27 109.0 2.3 58 31-90 10-68 (72)
54 2ecb_A Zinc fingers and homeob 99.9 5.2E-22 1.8E-26 109.9 4.6 53 35-89 17-69 (89)
55 1k61_A Mating-type protein alp 99.9 4.8E-22 1.7E-26 103.0 4.1 55 33-89 2-59 (60)
56 1mnm_C Protein (MAT alpha-2 tr 99.8 4.8E-22 1.7E-26 109.9 4.1 61 26-88 24-87 (87)
57 1du6_A PBX1, homeobox protein 99.8 3.4E-22 1.2E-26 104.8 2.8 58 29-88 3-63 (64)
58 1puf_B PRE-B-cell leukemia tra 99.8 9.2E-22 3.1E-26 105.6 4.4 58 30-89 2-62 (73)
59 3d1n_I POU domain, class 6, tr 99.8 1.1E-21 3.8E-26 118.1 5.0 62 25-88 89-150 (151)
60 2dmp_A Zinc fingers and homeob 99.8 2.7E-21 9.2E-26 107.3 5.7 55 34-90 18-72 (89)
61 2da6_A Hepatocyte nuclear fact 99.8 1.6E-21 5.4E-26 110.0 4.6 61 26-88 3-84 (102)
62 2l9r_A Homeobox protein NKX-3. 99.8 1.8E-21 6.1E-26 103.3 4.0 56 33-90 8-63 (69)
63 3l1p_A POU domain, class 5, tr 99.8 1E-21 3.5E-26 118.7 3.5 61 27-89 94-154 (155)
64 3nau_A Zinc fingers and homeob 99.8 7.1E-22 2.4E-26 103.2 2.1 52 36-89 11-62 (66)
65 1le8_B Mating-type protein alp 99.8 2.5E-21 8.7E-26 106.2 4.2 58 31-90 4-64 (83)
66 2dmn_A Homeobox protein TGIF2L 99.8 3.9E-21 1.3E-25 105.4 4.9 61 26-88 4-67 (83)
67 1b72_B Protein (PBX1); homeodo 99.8 2.3E-21 7.8E-26 107.2 4.0 58 30-89 2-62 (87)
68 1lfb_A Liver transcription fac 99.8 1.8E-21 6.1E-26 109.8 3.5 61 26-88 6-87 (99)
69 1x2m_A LAG1 longevity assuranc 99.8 1.8E-21 6.2E-26 101.6 2.8 50 39-90 10-60 (64)
70 2d5v_A Hepatocyte nuclear fact 99.8 7.4E-21 2.5E-25 115.8 3.7 62 26-89 94-155 (164)
71 2e19_A Transcription factor 8; 99.8 1.2E-20 4E-25 98.9 3.6 53 34-88 8-60 (64)
72 3k2a_A Homeobox protein MEIS2; 99.7 8.1E-19 2.8E-23 92.6 3.5 53 35-89 4-59 (67)
73 1ic8_A Hepatocyte nuclear fact 99.7 6.4E-19 2.2E-23 109.6 2.0 60 26-87 112-192 (194)
74 2da7_A Zinc finger homeobox pr 99.7 6.2E-18 2.1E-22 88.8 2.7 46 38-85 14-59 (71)
75 2h8r_A Hepatocyte nuclear fact 99.7 1.7E-17 5.7E-22 104.5 3.2 60 25-86 138-218 (221)
76 1mh3_A Maltose binding-A1 home 99.6 3.7E-16 1.3E-20 105.2 2.1 55 31-87 367-421 (421)
77 2lk2_A Homeobox protein TGIF1; 99.5 2.5E-15 8.6E-20 82.8 3.2 54 33-88 9-65 (89)
78 2nzz_A Penetratin conjugated G 99.3 7.9E-13 2.7E-17 61.4 1.0 17 73-89 1-17 (37)
79 2ys9_A Homeobox and leucine zi 95.9 0.0032 1.1E-07 32.7 1.5 39 41-81 18-56 (70)
80 2glo_A Brinker CG9653-PA; prot 85.9 0.63 2.2E-05 22.6 2.4 46 33-81 3-48 (59)
81 1hlv_A CENP-B, major centromer 85.5 0.78 2.7E-05 25.6 2.9 48 32-84 4-51 (131)
82 2elh_A CG11849-PA, LD40883P; s 81.9 1.6 5.6E-05 22.8 3.1 44 31-81 18-61 (87)
83 3hug_A RNA polymerase sigma fa 76.6 1.5 5E-05 23.1 1.8 46 35-87 37-82 (92)
84 2rgt_A Fusion of LIM/homeobox 75.5 0.014 4.9E-07 34.9 -7.1 30 27-56 134-163 (169)
85 2o8x_A Probable RNA polymerase 73.6 2.2 7.7E-05 20.8 2.0 46 35-87 15-60 (70)
86 1jko_C HIN recombinase, DNA-in 70.4 1.6 5.5E-05 19.7 1.0 41 36-83 6-46 (52)
87 1iuf_A Centromere ABP1 protein 68.3 9.7 0.00033 21.7 4.2 53 30-83 6-61 (144)
88 2jn6_A Protein CGL2762, transp 67.3 4.3 0.00015 21.4 2.4 42 33-80 3-45 (97)
89 3c57_A Two component transcrip 67.3 4 0.00014 21.6 2.2 47 34-88 26-72 (95)
90 1je8_A Nitrate/nitrite respons 66.1 3.7 0.00013 21.1 1.9 47 34-88 20-66 (82)
91 1tc3_C Protein (TC3 transposas 66.0 3.4 0.00012 18.2 1.6 40 35-81 5-44 (51)
92 3ulq_B Transcriptional regulat 65.1 3.9 0.00013 21.6 1.9 47 32-86 26-72 (90)
93 1s7o_A Hypothetical UPF0122 pr 64.4 3.8 0.00013 22.7 1.9 46 35-87 22-67 (113)
94 2p7v_B Sigma-70, RNA polymeras 63.5 4.8 0.00017 19.7 2.0 50 35-87 5-54 (68)
95 1p4w_A RCSB; solution structur 62.8 4.3 0.00015 21.9 1.8 46 33-86 32-77 (99)
96 1fse_A GERE; helix-turn-helix 62.8 5.7 0.00019 19.4 2.2 47 33-87 9-55 (74)
97 1x3u_A Transcriptional regulat 62.0 3.9 0.00013 20.4 1.5 45 36-88 17-61 (79)
98 2rnj_A Response regulator prot 61.8 5.2 0.00018 20.8 2.0 47 34-88 28-74 (91)
99 1ku3_A Sigma factor SIGA; heli 61.2 5.3 0.00018 19.8 1.9 48 35-87 10-59 (73)
100 1tty_A Sigma-A, RNA polymerase 57.9 7 0.00024 20.2 2.1 48 35-87 18-67 (87)
101 1xsv_A Hypothetical UPF0122 pr 57.5 6.4 0.00022 21.7 2.0 46 35-87 25-70 (113)
102 3i5g_B Myosin regulatory light 57.5 24 0.00081 19.9 4.9 39 32-72 6-49 (153)
103 2q1z_A RPOE, ECF SIGE; ECF sig 57.3 6 0.0002 22.9 1.9 27 60-88 155-181 (184)
104 3mzy_A RNA polymerase sigma-H 56.9 5.3 0.00018 22.4 1.6 45 35-87 109-153 (164)
105 2kvr_A Ubiquitin carboxyl-term 54.9 2.2 7.5E-05 24.5 -0.3 23 60-84 73-95 (130)
106 8tfv_A Protein (thanatin); bac 52.1 4.4 0.00015 15.3 0.5 15 72-86 3-17 (21)
107 1or7_A Sigma-24, RNA polymeras 51.3 9.2 0.00031 22.2 2.1 27 59-87 159-185 (194)
108 2jpc_A SSRB; DNA binding prote 50.3 4.2 0.00014 19.3 0.4 26 60-87 17-42 (61)
109 1rp3_A RNA polymerase sigma fa 50.3 9.6 0.00033 22.8 2.1 46 35-87 187-232 (239)
110 2rn7_A IS629 ORFA; helix, all 48.6 12 0.00043 19.8 2.2 46 33-80 4-52 (108)
111 2hxi_A Putative transcriptiona 48.2 10 0.00034 23.3 2.0 50 32-84 25-75 (241)
112 3fiw_A Putative TETR-family tr 47.9 6.1 0.00021 23.7 0.9 49 33-84 22-71 (211)
113 2jtd_A Myomesin-1, skelemin; i 46.4 0.4 1.4E-05 27.8 -4.2 43 35-80 18-60 (142)
114 2qko_A Possible transcriptiona 46.2 8.9 0.00031 22.5 1.5 40 42-84 35-74 (215)
115 2x48_A CAG38821; archeal virus 44.5 9.5 0.00032 17.6 1.2 36 38-80 18-53 (55)
116 2q0o_A Probable transcriptiona 43.9 13 0.00043 22.8 1.9 47 33-87 173-219 (236)
117 2jpf_A Hypothetical protein; a 43.9 3.8 0.00013 22.3 -0.4 11 73-83 52-62 (127)
118 3clo_A Transcriptional regulat 41.8 17 0.00057 22.7 2.3 48 34-89 196-243 (258)
119 3fmy_A HTH-type transcriptiona 39.5 21 0.00073 17.5 2.1 41 34-83 9-49 (73)
120 1u78_A TC3 transposase, transp 39.4 20 0.00069 19.6 2.2 41 34-81 5-45 (141)
121 1l3l_A Transcriptional activat 37.8 20 0.00067 21.9 2.1 46 33-86 171-216 (234)
122 2jml_A DNA binding domain/tran 37.1 6 0.0002 20.3 -0.3 19 60-80 9-27 (81)
123 3q0w_A HTH-type transcriptiona 34.9 8.4 0.00029 23.1 0.1 39 43-84 52-90 (236)
124 2hxo_A Putative TETR-family tr 33.8 34 0.0012 20.7 2.8 49 33-84 13-62 (237)
125 3o9x_A Uncharacterized HTH-typ 33.0 25 0.00086 19.3 1.9 23 59-83 87-109 (133)
126 2k27_A Paired box protein PAX- 32.5 32 0.0011 19.5 2.4 41 34-81 24-64 (159)
127 1rzs_A Antirepressor, regulato 32.0 8.6 0.00029 18.5 -0.2 19 59-79 13-31 (61)
128 1pdn_C Protein (PRD paired); p 31.7 33 0.0011 18.1 2.2 41 35-82 17-57 (128)
129 1mij_A Protein prospero; homeo 30.7 53 0.0018 19.1 2.9 49 34-84 2-53 (152)
130 2laq_A Accessory gland-specifi 30.1 10 0.00034 16.5 -0.1 11 81-91 18-28 (36)
131 3qp6_A CVIR transcriptional re 29.7 30 0.001 21.7 2.0 46 34-87 196-241 (265)
132 2lv7_A Calcium-binding protein 29.1 63 0.0022 16.9 3.1 45 33-79 27-78 (100)
133 2lhi_A Calmodulin, serine/thre 29.0 31 0.0011 19.9 1.9 38 33-72 2-44 (176)
134 2lfw_A PHYR sigma-like domain; 28.9 12 0.00041 21.3 0.0 47 35-88 93-139 (157)
135 2xi8_A Putative transcription 28.8 7.2 0.00025 18.3 -0.8 22 59-82 17-38 (66)
136 3c3w_A Two component transcrip 28.4 24 0.00082 21.0 1.4 46 34-87 148-193 (225)
137 2g7l_A TETR-family transcripti 28.2 23 0.00078 21.7 1.2 49 33-84 16-65 (243)
138 2r1j_L Repressor protein C2; p 28.0 7.7 0.00026 18.3 -0.8 23 59-83 21-43 (68)
139 3bd1_A CRO protein; transcript 27.4 7.3 0.00025 19.5 -1.0 23 59-83 14-36 (79)
140 3szt_A QCSR, quorum-sensing co 27.2 36 0.0012 20.8 2.0 45 34-86 174-218 (237)
141 1l0o_C Sigma factor; bergerat 26.4 14 0.00047 22.1 0.0 27 57-85 215-241 (243)
142 1zug_A Phage 434 CRO protein; 26.2 8.4 0.00029 18.4 -0.9 23 59-83 19-41 (71)
143 2v79_A DNA replication protein 25.4 80 0.0027 17.8 3.2 42 36-82 30-75 (135)
144 3kyd_D Small ubiquitin-related 25.2 16 0.00054 20.5 0.1 20 64-83 70-89 (115)
145 1k78_A Paired box protein PAX5 25.2 49 0.0017 18.4 2.2 41 34-81 31-71 (149)
146 3bs3_A Putative DNA-binding pr 24.8 9.5 0.00033 18.5 -0.8 23 59-83 26-48 (76)
147 2eo2_A Adult MALE hypothalamus 24.7 79 0.0027 16.1 3.7 44 32-75 25-68 (71)
148 3omt_A Uncharacterized protein 24.6 11 0.00039 18.3 -0.6 22 59-82 24-45 (73)
149 3kz3_A Repressor protein CI; f 24.2 12 0.00041 18.6 -0.5 23 59-83 28-50 (80)
150 1j9i_A GPNU1 DBD;, terminase s 24.0 17 0.00057 17.8 0.0 17 65-81 9-25 (68)
151 1g6u_A Domain swapped dimer; d 23.9 61 0.0021 14.6 2.2 16 34-49 15-30 (48)
152 1adr_A P22 C2 repressor; trans 22.6 11 0.00039 18.2 -0.8 23 59-83 21-43 (76)
153 1r69_A Repressor protein CI; g 22.6 11 0.00038 17.8 -0.8 23 59-83 17-39 (69)
154 2q24_A Putative TETR family tr 22.2 28 0.00095 19.9 0.8 40 41-84 21-60 (194)
155 2qwt_A Transcriptional regulat 22.1 39 0.0013 19.3 1.4 37 44-84 22-58 (196)
156 2b5a_A C.BCLI; helix-turn-heli 22.1 11 0.00039 18.3 -0.9 22 59-82 26-47 (77)
157 1r8d_A Transcription activator 21.6 14 0.00048 20.0 -0.6 15 65-79 9-23 (109)
158 2ylm_A Ubiquitin carboxyl-term 21.5 17 0.00057 25.6 -0.4 24 59-84 52-75 (530)
159 2hin_A GP39, repressor protein 21.4 16 0.00054 18.6 -0.4 21 59-81 13-33 (71)
160 2pmy_A RAS and EF-hand domain- 21.4 25 0.00087 17.7 0.4 44 34-79 19-67 (91)
161 2vz4_A Tipal, HTH-type transcr 21.2 14 0.00049 19.9 -0.6 15 65-79 8-22 (108)
162 1wm3_A Ubiquitin-like protein 21.1 21 0.00073 17.7 0.1 19 65-83 32-50 (72)
163 3lsg_A Two-component response 20.8 28 0.00094 18.2 0.5 21 58-80 21-41 (103)
164 3t72_q RNA polymerase sigma fa 20.6 70 0.0024 17.0 2.1 49 35-86 19-67 (99)
165 3b7h_A Prophage LP1 protein 11 20.5 14 0.00048 18.0 -0.7 23 59-83 23-45 (78)
166 1a04_A Nitrate/nitrite respons 20.5 51 0.0017 19.2 1.7 46 34-87 153-198 (215)
No 1
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.92 E-value=5.8e-26 Score=123.96 Aligned_cols=62 Identities=24% Similarity=0.223 Sum_probs=58.1
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhh----CCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSR----THYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~----~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
..+.++.||.||.+|+..|+..|+. ++||+..+++.| |..|||++.+|+|||||||+|++++
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~L--a~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRF--CQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHH--HHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHH--HHHhCCCcccccCCccccCcCCCCC
Confidence 3457788999999999999999999 999999999999 9999999999999999999999875
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=9.2e-26 Score=123.22 Aligned_cols=64 Identities=27% Similarity=0.343 Sum_probs=59.6
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 25 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 25 ~~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
...+.++.|+.||.+|+..|+..|..++||+..++..| |..|||++.+|+|||||||+|+++.+
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--A~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDL--AESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHH--HHHhCCCHHHeeeccHHHHHHhhccc
Confidence 34566788999999999999999999999999999999 99999999999999999999999864
No 3
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.92 E-value=2.1e-25 Score=122.76 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=59.4
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 25 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 25 ~~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
...+.++.|+.||..|+..|+..|..++||+..++..| |..+||++.+|+|||||||+|+++.+
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQEL--SNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHH--HHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHH--HHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 45567789999999999999999999999999999999 99999999999999999999998753
No 4
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.92 E-value=8.1e-26 Score=123.32 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=57.0
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhh-----CCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSR-----THYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~-----~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
..++++.||.||.+|+..|+ .|.. ++||+..++++| |..|+|++.+|+|||||||+|++++
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~L--a~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQF--CAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHH--HHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHH--HHHhCcCcCcccccccccccCCCCC
Confidence 45577889999999999999 7999 999999999999 9999999999999999999999875
No 5
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.92 E-value=2.5e-25 Score=118.71 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=59.3
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 25 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 25 ~~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
...+.++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.+
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--A~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKI--SAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHH--HHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 34556778999999999999999999999999999999 99999999999999999999999864
No 6
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.91 E-value=2.5e-25 Score=121.44 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=59.6
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 25 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 25 ~~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
...+.++.|+.||.+|+..|+..|..++||+..++..| |..|||++.+|+|||||||+++++.+
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~L--a~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHI--AHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHH--HHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHH--HHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 34567788999999999999999999999999999999 99999999999999999999999865
No 7
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.91 E-value=6.1e-25 Score=117.22 Aligned_cols=63 Identities=22% Similarity=0.345 Sum_probs=58.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
..+.++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL--AASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHH--HHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHH--HHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 4456788999999999999999999999999999999 99999999999999999999999864
No 8
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.91 E-value=9.3e-25 Score=116.48 Aligned_cols=64 Identities=25% Similarity=0.334 Sum_probs=59.2
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 25 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 25 ~~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
...+.++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~L--A~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQL--SNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHH--HHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 34556788999999999999999999999999999999 99999999999999999999999864
No 9
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=7.8e-25 Score=116.79 Aligned_cols=63 Identities=38% Similarity=0.479 Sum_probs=58.6
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
....++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~L--A~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQL--ARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHH--HHHHCCCHHHeehccccccccccccC
Confidence 3456778999999999999999999999999999999 99999999999999999999999864
No 10
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.91 E-value=5.1e-25 Score=114.68 Aligned_cols=59 Identities=27% Similarity=0.346 Sum_probs=53.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 29 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 29 ~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
.++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||++++++
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQL--SSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHH--HHHHCcCHHHHHHHhhhhccccccC
Confidence 4678999999999999999999999999999999 9999999999999999999999985
No 11
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.91 E-value=8.1e-25 Score=116.71 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=59.2
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 25 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 25 ~~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
...+.++.|+.||.+|+..|+..|..++||+..++..| |..+||+..+|+|||||||+++++.+
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~L--A~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEM--ADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHH--HHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH--HHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 34556788999999999999999999999999999999 99999999999999999999999864
No 12
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.90 E-value=1.6e-24 Score=115.60 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 27 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 27 ~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
...++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.+
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRL--AKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHH--HHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 345668899999999999999999999999999999 99999999999999999999998764
No 13
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.90 E-value=1.9e-24 Score=117.94 Aligned_cols=62 Identities=37% Similarity=0.591 Sum_probs=57.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
....++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+|+++.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--A~~l~l~~~qV~vWFqNRR~k~kk~ 65 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERL--AAKIDLPEARIQVWFSNRRAKWRRE 65 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHH--HHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHH--HHHhCCCHHHhhHHHHHHHHHHHHH
Confidence 3456778999999999999999999999999999999 9999999999999999999999864
No 14
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.90 E-value=2.1e-24 Score=117.77 Aligned_cols=62 Identities=34% Similarity=0.521 Sum_probs=58.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
..+.++.|+.||.+|+..|+..|..++||+..++..| |..++|++.+|+|||||||+|+++.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEV--ALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHH--HHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 4556788999999999999999999999999999999 9999999999999999999999875
No 15
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.90 E-value=2.7e-24 Score=116.60 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=57.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhc
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTS 88 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~ 88 (91)
..+.++.|+.||..|+..|+..|..++||+...+..| |..+||++.+|+|||||||+++++
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~~WFqNRR~k~kr 66 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHL--ASLIRLTPTQVKIWFQNHRYKTKR 66 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHH--HHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHH--HHHhCCCHHHHHHHhHHhhcchhh
Confidence 4556778999999999999999999999999999999 999999999999999999999986
No 16
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.90 E-value=1.7e-24 Score=113.34 Aligned_cols=59 Identities=24% Similarity=0.255 Sum_probs=55.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 29 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 29 ~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
.++.|+.||..|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--A~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVEL--AVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHH--HHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 5678999999999999999999999999999999 9999999999999999999999874
No 17
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.90 E-value=1.4e-24 Score=113.29 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=52.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 28 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 28 k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
+.++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~L--A~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQEL--SSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHH--HHHhCCCHHHhhHHhHHhhcchhhc
Confidence 35678999999999999999999999999999999 9999999999999999999999874
No 18
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.90 E-value=2.7e-24 Score=110.88 Aligned_cols=58 Identities=28% Similarity=0.328 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 30 RRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 30 ~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||++++++
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~~WFqNrR~k~kr~ 58 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEF--SSSLSLTETQVKIWFQNRRAKAKRL 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHH--HHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHH--HHHHCcCHHHhhhhhhHhhhhhccC
Confidence 467899999999999999999999999999999 9999999999999999999999874
No 19
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=4.1e-24 Score=116.62 Aligned_cols=62 Identities=21% Similarity=0.379 Sum_probs=57.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
..+.++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL--AQKTGLTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHH--HHHhCCCHHHhhHccHHHHHHHHHH
Confidence 3456778999999999999999999999999999999 9999999999999999999999863
No 20
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.90 E-value=2.5e-24 Score=117.77 Aligned_cols=62 Identities=42% Similarity=0.686 Sum_probs=57.2
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
.++.++.|+.||..|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--A~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREEL--AQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHH--HHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 4567789999999999999999999999999999999 9999999999999999999999864
No 21
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.90 E-value=5.2e-24 Score=118.12 Aligned_cols=63 Identities=22% Similarity=0.297 Sum_probs=54.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
..+.++.|+.||.+|+..|+..|..++||+..++..| |..+||+..+|+|||||||+++++..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEI--AHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHH--HHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHH--HHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 4456778999999999999999999999999999999 99999999999999999999998753
No 22
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.89 E-value=5.8e-24 Score=115.29 Aligned_cols=62 Identities=23% Similarity=0.237 Sum_probs=57.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
.++.++.|+.||..|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--A~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEV--ARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHH--HHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 4556778999999999999999999999999999999 9999999999999999999999864
No 23
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.89 E-value=4e-24 Score=112.86 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 28 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 28 k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
+.++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQL--VEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHH--HHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHH--HHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 35678999999999999999999999999999999 99999999999999999999998754
No 24
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.89 E-value=8.5e-24 Score=113.59 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 27 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 27 ~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
.+.++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--A~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI--SATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHH--HHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHH--HHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 456778999999999999999999999999999999 9999999999999999999999875
No 25
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-24 Score=118.65 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=58.4
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhC----CCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRT----HYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~----~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
..+.++.|+.||.+|+..|+..|..+ +||+..++..| |..+||++.+|+|||||||+|+++.+
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~L--a~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAV--ATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHH--HHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 45567889999999999999999999 99999999999 99999999999999999999998753
No 26
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.89 E-value=8.3e-24 Score=114.04 Aligned_cols=62 Identities=44% Similarity=0.704 Sum_probs=58.0
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
.+++++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQL--AMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHH--HHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 4556778999999999999999999999999999999 9999999999999999999999874
No 27
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.89 E-value=8.2e-24 Score=118.38 Aligned_cols=62 Identities=26% Similarity=0.409 Sum_probs=57.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
..+.++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+|+++.
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~L--A~~l~L~~~qV~vWFqNRR~k~kr~ 75 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAAL--ARGLKMTDAQVKTWFQNRRTKWRRQ 75 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHH--HHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHH--HHHhCCChhhcccccHhhhhhhhhh
Confidence 4456778999999999999999999999999999999 9999999999999999999999874
No 28
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.89 E-value=4.6e-24 Score=120.02 Aligned_cols=63 Identities=21% Similarity=0.215 Sum_probs=55.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
....++.|+.||.+|+..|+..|..++||+..++..| |..+||+..+|+|||||||+|+++.+
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~L--A~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKL--AKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHH--HHHhCCCHHHeeecchhhhhHhhhhc
Confidence 4445678999999999999999999999999999999 99999999999999999999999865
No 29
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.89 E-value=6.2e-24 Score=110.19 Aligned_cols=59 Identities=31% Similarity=0.389 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 30 RRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 30 ~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~~WFqNrR~k~kr~r 60 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCEL--AAQLNLPESTIKVWFQNRRMKDKRQR 60 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHH--HHHHTSCHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHH--HHHHCcCHHHHHHhhHHHHhHhhccC
Confidence 567899999999999999999999999999999 99999999999999999999998753
No 30
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.89 E-value=4e-24 Score=113.46 Aligned_cols=60 Identities=35% Similarity=0.501 Sum_probs=56.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 28 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 28 k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
+.++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~~WFqNrR~k~rk~ 61 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEI--AVWTNLTEARVRVWFKNRRAKWRKR 61 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHH--HHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHH--HHHHCcCHHHHHHHHHHHhHHHHHH
Confidence 45778999999999999999999999999999999 9999999999999999999999864
No 31
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.89 E-value=3.5e-24 Score=113.69 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=55.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 29 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 29 ~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
+++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~vWFqNRR~k~kk~ 60 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEI--AHALSLTERQIKIWFQNRRMKWKKE 60 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHH--HHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHH--HHHHCcCHhhhhHHhHHHHhHHhHh
Confidence 3678899999999999999999999999999999 9999999999999999999999874
No 32
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.89 E-value=8.3e-24 Score=112.22 Aligned_cols=59 Identities=27% Similarity=0.272 Sum_probs=55.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 29 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 29 ~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
+++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADL--SAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHH--HHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHH--HHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 4678999999999999999999999999999999 9999999999999999999999863
No 33
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.89 E-value=1.1e-23 Score=111.75 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=56.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 29 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 29 ~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
.++.|+.||.+|+..|+..|..++||+...+..| |..+||++.+|+|||||||+++++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--A~~l~l~~~qV~~WFqNRR~k~kr~ 60 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHL--ASMIHLTPTQVKIWFQNHRYKMKRQ 60 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHH--HHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHH--HHHhCCCHHHhHHHhHHHhhhhhhh
Confidence 4568899999999999999999999999999999 9999999999999999999999875
No 34
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.88 E-value=1.1e-23 Score=115.21 Aligned_cols=62 Identities=26% Similarity=0.305 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 27 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 27 ~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
...++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+|+++..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~L--A~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEM--AHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHH--HHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 346778999999999999999999999999999999 99999999999999999999999853
No 35
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.88 E-value=1.8e-23 Score=107.63 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=54.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 29 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 29 ~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
+++.|+.|+.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+|++
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQL--ASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHH--HHHhCcCHHHHHHhhHHhhccCC
Confidence 4568999999999999999999999999999999 99999999999999999999975
No 36
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.88 E-value=2.4e-23 Score=110.16 Aligned_cols=58 Identities=28% Similarity=0.359 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 30 RRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 30 ~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDL--AQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHH--HHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 568899999999999999999999999999999 9999999999999999999999875
No 37
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.88 E-value=1.2e-23 Score=109.41 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 27 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 27 ~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
.+.++.|+.||.+|+..|+..|..++||+..++..| |..+||+..+|+|||||||++++
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~L--a~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEV--AKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHH--HHHHCcCHHHHHHHHHHHHhccC
Confidence 456778999999999999999999999999999999 99999999999999999999975
No 38
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.88 E-value=2.8e-23 Score=111.77 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=53.7
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 32 YRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 32 ~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
.|..||.+|+..|+..|..++||+..+++.| |..+||+..+|+|||||+|+|+++.+
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~L--A~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKL--EQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH--HHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 4567999999999999999999999999999 99999999999999999999999864
No 39
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.88 E-value=1.7e-23 Score=108.59 Aligned_cols=57 Identities=47% Similarity=0.681 Sum_probs=50.3
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 32 YRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 32 ~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREEL--AMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHH--HHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 4789999999999999999999999999999 99999999999999999999998753
No 40
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=4.4e-23 Score=111.57 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 30 RRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 30 ~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
...|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.+
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~L--a~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHL--TKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHH--HHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHH--HHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 345899999999999999999999999999999 99999999999999999999998753
No 41
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=4.3e-23 Score=111.35 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=54.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 31 RYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 31 r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
++|+.||.+|+..|+..|..++||+..++..| |..+||+..+|+|||||||+++++.+
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~L--A~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRL--RSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHH--HHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 35678999999999999999999999999999 99999999999999999999998753
No 42
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.88 E-value=4.4e-23 Score=111.02 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=56.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 29 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 29 ~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
.++.|+.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+++++.+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~L--a~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRL--MKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHH--HHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 4567899999999999999999999999999999 99999999999999999999999864
No 43
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.88 E-value=2.6e-23 Score=126.35 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 27 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 27 ~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
.++++.|+.||..|+..|+..|..++||+..++..| |..+||++.+|+|||||||+|+++.|
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--A~~l~L~~~qV~vWFqNRR~k~kr~~ 160 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLI--AEQLNMEKEVIRVWFSNRRQKEKRIN 160 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHH--HHHHCCChHHhhHhhHHhhhhhhccC
Confidence 466788999999999999999999999999999999 99999999999999999999999875
No 44
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.87 E-value=3.7e-23 Score=124.00 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=56.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
..++++.|+.||..|+..|+..|..++||+..++..| |..+||++.+|+|||||||+|+++.|
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~L--A~~l~L~~~qV~vWFqNRR~k~kr~k 146 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRM--AEELNLEKEVVRVWFCNRRQREKRVK 146 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHH--HHHhCCChhhchhhhHhhhhhhhccC
Confidence 4556778999999999999999999999999999999 99999999999999999999999876
No 45
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.87 E-value=3e-23 Score=106.25 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 34 TTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 34 ~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
|.||.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+|+++.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~L--A~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAAL--AKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHH--HHHhCcCHHHhhHhhHHhhhhhccc
Confidence 67999999999999999999999999999 9999999999999999999999874
No 46
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.87 E-value=8.5e-23 Score=106.66 Aligned_cols=58 Identities=19% Similarity=0.152 Sum_probs=54.4
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhh-CCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHh
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSR-THYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAA 85 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~-~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k 85 (91)
.+.++|.||.|+.+|+..|+..|+. ++||+...++.| |.++||++++|+|||||+|--
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~L--a~~tGL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTL--SAQLDLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHH--HHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHH--HHHhCCCHHHHHHhhccceee
Confidence 4467889999999999999999999 999999999999 999999999999999999954
No 47
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.87 E-value=8.4e-23 Score=109.67 Aligned_cols=58 Identities=22% Similarity=0.187 Sum_probs=54.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-CCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 30 RRYRTTFTSFQLEELEKAFSR-THYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 30 ~r~R~~~t~~ql~~Le~~f~~-~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
.+.|+.||.+|+..|+..|.. ++||+..++..| |..+||++.+|+|||||||+++++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~L--A~~~~l~~~qV~~WFqNRR~k~rk~ 61 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLI--AAEAGLTEEQTQKWFKQRLAEWRRS 61 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHH--HHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHH--HHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 356899999999999999995 999999999999 9999999999999999999999864
No 48
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.87 E-value=7.8e-23 Score=109.53 Aligned_cols=57 Identities=25% Similarity=0.230 Sum_probs=53.9
Q ss_pred CCCCCCCHHHHHHHHHHHhh-CCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 31 RYRTTFTSFQLEELEKAFSR-THYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 31 r~R~~~t~~ql~~Le~~f~~-~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
+.|+.||.+|+..|+..|.. ++||+...+..| |..+||++.+|+|||||||+++++.
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~L--A~~l~l~~~qV~~WFqNRR~k~rk~ 60 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLI--AAEAGLTEEQTQKWFKQRLAEWRRS 60 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHH--HHHHCcCHHHhhHHhHHHHHHHhhh
Confidence 46899999999999999996 999999999999 9999999999999999999999874
No 49
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.87 E-value=6.4e-23 Score=115.53 Aligned_cols=61 Identities=23% Similarity=0.222 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 27 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 27 ~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
...++.|+.||.+|+..|+..|..++||+..++..| |..|||++.+|+|||||||+|+++.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~L--A~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEI--AATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHH--HHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 456778999999999999999999999999999999 9999999999999999999999863
No 50
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=1.1e-22 Score=114.20 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=58.5
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcC---------------CCCCcchhccchhHHhhhcC
Q psy3735 25 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRS---------------MPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 25 ~~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~---------------l~~~~v~vWFqnrR~k~~~~ 89 (91)
...+.++.|+.|+++|+..|+..|+.++||+...++.| |..|+ |++.+|+|||||||+++++.
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~l--A~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEI--ANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHH--HHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999 99999 99999999999999999863
No 51
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.86 E-value=8.2e-23 Score=124.52 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=51.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
..++++.|+.|+..|+..|+..|..++||+..++..| |..+||++.+|+|||||||+|+++.+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~L--A~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGL--ADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHH--HHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 4566778999999999999999999999999999999 99999999999999999999999875
No 52
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=2.6e-22 Score=107.74 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=57.2
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhh---CCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSR---THYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~---~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
..+.++.|+.|+.+|+..|+..|.. ++||+..++..| |..+||+..+|+|||||+|+++++.
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~L--a~~~~L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQI--AAQTNLTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHH--HHHHCcCHHHHHHHhHHHHhhcccc
Confidence 4456778999999999999999987 999999999999 9999999999999999999999875
No 53
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.86 E-value=1e-22 Score=109.02 Aligned_cols=58 Identities=24% Similarity=0.184 Sum_probs=53.3
Q ss_pred CCCCCCCHHHHHHHHHHH-hhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 31 RYRTTFTSFQLEELEKAF-SRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 31 r~R~~~t~~ql~~Le~~f-~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
+.+.+++.+|+..||..| ..++||+..++..| |..+||++.+|+|||||||+|++++.
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~L--A~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGL--SKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHH--HHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHH--HHHhCCChhhcchhhhhcccCCCCCC
Confidence 455667888999999999 99999999999999 99999999999999999999999764
No 54
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=5.2e-22 Score=109.93 Aligned_cols=53 Identities=15% Similarity=0.018 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 35 TFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 35 ~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
.||.+|+..|+..|..++||+..++..| |..+||++.||+|||||||+||++.
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~L--A~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRL--RAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHH--HHHhCcChHHCeecccccchHHHHH
Confidence 7899999999999999999999999999 9999999999999999999999874
No 55
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.85 E-value=4.8e-22 Score=102.99 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=53.1
Q ss_pred CCCCCHHHHHHHHHHHhh---CCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 33 RTTFTSFQLEELEKAFSR---THYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 33 R~~~t~~ql~~Le~~f~~---~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
++.|+.+|+..|+..|.. ++||+..++..| |..+||+..+|++||||||++++++
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~L--a~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENL--MKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHH--HHHHCcCHHHHHHHHHHHHcccccC
Confidence 688999999999999999 999999999999 9999999999999999999999986
No 56
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.85 E-value=4.8e-22 Score=109.92 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=56.1
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhh---CCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhc
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSR---THYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTS 88 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~---~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~ 88 (91)
..++++.|+.|+.+|+..|+..|.. ++||+..++..| |..+||+..+|++||||||+|++.
T Consensus 24 ~~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~L--a~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 24 KSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENL--MKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp EESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHH--HHHHCcCHHHHHHHHHHHHhhccC
Confidence 3445667899999999999999999 999999999999 999999999999999999999874
No 57
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.85 E-value=3.4e-22 Score=104.78 Aligned_cols=58 Identities=10% Similarity=0.127 Sum_probs=54.9
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhc
Q psy3735 29 QRRYRTTFTSFQLEELEKAF---SRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTS 88 (91)
Q Consensus 29 ~~r~R~~~t~~ql~~Le~~f---~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~ 88 (91)
.++.|+.|+.+|+..|+..| ..++||+..++..| |..+||+..+|++||||+|+++++
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~L--a~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEEL--AKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHH--HHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHH--HHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46688999999999999999 89999999999999 999999999999999999999986
No 58
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.85 E-value=9.2e-22 Score=105.58 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=54.9
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 30 RRYRTTFTSFQLEELEKAF---SRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 30 ~r~R~~~t~~ql~~Le~~f---~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
++.|+.|+..|+..|+..| ..++||+..++..| |..+||+..+|+|||||+|+++++.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~L--a~~~~L~~~qV~~WFqNrR~r~kk~ 62 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEEL--AKKCGITVSQVSNWFGNKRIRYKKN 62 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHH--HHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHH--HHHHCcCHHHHHHHHHHHHhhcccc
Confidence 5678999999999999999 89999999999999 9999999999999999999999864
No 59
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.84 E-value=1.1e-21 Score=118.12 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=58.0
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhc
Q psy3735 25 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTS 88 (91)
Q Consensus 25 ~~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~ 88 (91)
...++++.|+.|+..|+..|+..|..++||+..++..| |..+||++.+|+|||||||+|+++
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~L--A~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEM--AKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHH--HHHHCCCHHHhHHHHHHHHhccCC
Confidence 34567778999999999999999999999999999999 999999999999999999999986
No 60
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-21 Score=107.34 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 34 TTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 34 ~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
..||.+|+..|+..|..++||+..++..| |..+||+..+|+|||||||+|+++.+
T Consensus 18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~L--a~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSSFPTQAELDRL--RVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHHHHHHHHccCCCCCHHHHHHH--HHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 45899999999999999999999999999 99999999999999999999998764
No 61
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-21 Score=109.96 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=56.6
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhc---------------------CCCCCcchhccchhHH
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQR---------------------SMPGELCVAWTHHLNA 84 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l---------------------~l~~~~v~vWFqnrR~ 84 (91)
.++.++.|+.|++.|+..|+..|+.++||+..+|++| |..| +|++.+|+|||||||+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~L--A~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~ 80 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREAL--VEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 80 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHH--HHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHH--HHHHHHhhhcccccccchhcccccccccccceeeeecchHH
Confidence 4557789999999999999999999999999999999 9999 7889999999999999
Q ss_pred hhhc
Q psy3735 85 AFTS 88 (91)
Q Consensus 85 k~~~ 88 (91)
++++
T Consensus 81 k~kr 84 (102)
T 2da6_A 81 EEAF 84 (102)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 62
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-21 Score=103.29 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=52.3
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 33 RTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 33 R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
-...|..|+..||..|..++||+...+..| |..+||++.+|+|||||||+|+++..
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~L--A~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHL--AKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHH--HHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHH--HHHhCCChhheeecchhhhhhhhhhh
Confidence 356899999999999999999999999999 99999999999999999999998753
No 63
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.84 E-value=1e-21 Score=118.73 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 27 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 27 ~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
.++++.|+.|+..|+..|+..|..++||+..++..| |..+||++.+|+|||||||+|++++
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~L--A~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHI--ANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHH--HHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHH--HHHcCCChhheeeccccccccccCC
Confidence 456778999999999999999999999999999999 9999999999999999999999986
No 64
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.83 E-value=7.1e-22 Score=103.16 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 36 FTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 36 ~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
-|.+|+..|+..|..++||+..++.+| |..+||+..+|++||||||+||+++
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eL--A~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRL--IEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHH--HHHhCcCHHHhhHhcccchhhhhcc
Confidence 378999999999999999999999999 9999999999999999999999875
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.83 E-value=2.5e-21 Score=106.19 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=53.5
Q ss_pred CCCCCCCHHHHHHHHHHHhh---CCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 31 RYRTTFTSFQLEELEKAFSR---THYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 31 r~R~~~t~~ql~~Le~~f~~---~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
+.|++|+.+|+..|+..|.. ++||+..++..| |..+||+..||+|||||||+++++..
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~L--a~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENL--MKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHH--HHHHCCCHHHcccccHHHHccccccc
Confidence 34667999999999999999 999999999999 99999999999999999999998753
No 66
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.83 E-value=3.9e-21 Score=105.44 Aligned_cols=61 Identities=10% Similarity=0.123 Sum_probs=55.6
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhh---CCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhc
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSR---THYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTS 88 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~---~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~ 88 (91)
..+.++.|+.|+.+|+..|+..|.. ++||+..++..| |..+||+..||+|||||+|+++++
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~L--A~~~gLs~~qV~~WFqNrR~r~k~ 67 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQML--SEKTNLSLLQISNWFINARRRILP 67 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHH--HHHHCCCHHHHHHHHHHHHHHTHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHH--HHHHCcCHHHhhHHhhhhHhhhcH
Confidence 3456678899999999999999987 599999999999 999999999999999999999864
No 67
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.83 E-value=2.3e-21 Score=107.15 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=54.4
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 30 RRYRTTFTSFQLEELEKAF---SRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 30 ~r~R~~~t~~ql~~Le~~f---~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
++.|+.|+.+|+..|+..| ..++||+..++..| |..+||+..+|+|||||||+++++.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~L--a~~~~l~~~qV~~WFqNrR~r~kk~ 62 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEEL--AKKCGITVSQVSNWFGNKRIRYKKN 62 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHH--HHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHH--HHHHCcCHHHHHHHHHHHHHHhhhc
Confidence 5678999999999999999 89999999999999 9999999999999999999999874
No 68
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.83 E-value=1.8e-21 Score=109.79 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=51.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhh------------------cC---CCCCcchhccchhHH
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQ------------------RS---MPGELCVAWTHHLNA 84 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~------------------l~---l~~~~v~vWFqnrR~ 84 (91)
.++.++.|+.|+.+|+..|+..|+.++||+...|++| |.. || |++.+|+|||||||+
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eL--A~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETL--VEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHH--HHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHH--HHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 4566789999999999999999999999999999999 999 88 999999999999999
Q ss_pred hhhc
Q psy3735 85 AFTS 88 (91)
Q Consensus 85 k~~~ 88 (91)
+.++
T Consensus 84 k~k~ 87 (99)
T 1lfb_A 84 EEAF 87 (99)
T ss_dssp TTSC
T ss_pred HHHH
Confidence 8765
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=1.8e-21 Score=101.60 Aligned_cols=50 Identities=22% Similarity=0.096 Sum_probs=46.6
Q ss_pred HHHHHHHHHH-hhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcCC
Q psy3735 39 FQLEELEKAF-SRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSSK 90 (91)
Q Consensus 39 ~ql~~Le~~f-~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~~ 90 (91)
.|+.+||..| ..++||+...+..| |.+|||+++||+|||||||+|++.++
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~L--A~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGL--SKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHH--HHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHH--HHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 4799999999 56999999999999 99999999999999999999999875
No 70
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.81 E-value=7.4e-21 Score=115.84 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=54.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
..+.++.|+.||..|+..|+..|..++||+...+..| |..+||++.+|+|||||||+++++.
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~l--a~~l~L~~~qV~~WFqNrR~r~k~~ 155 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITI--SQQLGLELSTVSNFFMNARRRSLDK 155 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHTSSCC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHH--HHHHCcCHHHhhhcChhhhcccccc
Confidence 4556788999999999999999999999999999999 9999999999999999999999874
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=98.91 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhc
Q psy3735 34 TTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTS 88 (91)
Q Consensus 34 ~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~ 88 (91)
...+.+|+..|+..|..++||+..++..| |..+||++.+|+|||||||+|-++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~L--A~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKI--ADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHH--HHHhCcChhhcCcchhcccCCCCC
Confidence 34568999999999999999999999999 999999999999999999998765
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=8.1e-19 Score=92.63 Aligned_cols=53 Identities=8% Similarity=0.087 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHh---hCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 35 TFTSFQLEELEKAFS---RTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 35 ~~t~~ql~~Le~~f~---~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
.|+.+|+..|+..|. .++||+..++..| |..+||+..||++||||+|+++++.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~L--a~~~~l~~~qV~~WFqNrR~r~kk~ 59 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQL--AQDTGLTILQVNNWFINARRRIVQP 59 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHH--HHHhCcCHHHhhhhhHHHHHHHhHH
Confidence 689999999999999 9999999999999 9999999999999999999999875
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.73 E-value=6.4e-19 Score=109.63 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=53.0
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcC---------------------CCCCcchhccchhHH
Q psy3735 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRS---------------------MPGELCVAWTHHLNA 84 (91)
Q Consensus 26 ~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~---------------------l~~~~v~vWFqnrR~ 84 (91)
.++.+|.|+.|++.|+..|+..|..++||+...|+.| |..++ |++.+|+|||||||+
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~l--a~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~ 189 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETL--VEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 189 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHH--HHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHH
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHH--HHHhCchhhccccccccccccccccccCccccchhchhhhh
Confidence 4567789999999999999999999999999999999 99999 999999999999999
Q ss_pred hhh
Q psy3735 85 AFT 87 (91)
Q Consensus 85 k~~ 87 (91)
+.+
T Consensus 190 ~~k 192 (194)
T 1ic8_A 190 EEA 192 (194)
T ss_dssp HCC
T ss_pred hhh
Confidence 875
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.2e-18 Score=88.77 Aligned_cols=46 Identities=13% Similarity=0.118 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHh
Q psy3735 38 SFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAA 85 (91)
Q Consensus 38 ~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k 85 (91)
.+|+..|+.+|+.+++|+..++..| |..+||+.++|+|||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~L--A~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKI--SIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHH--HHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHH--HHHhCCCHHHHHHHHhhcccc
Confidence 4689999999999999999999999 999999999999999999985
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.67 E-value=1.7e-17 Score=104.53 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=52.1
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcC---------------------CCCCcchhccchhH
Q psy3735 25 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRS---------------------MPGELCVAWTHHLN 83 (91)
Q Consensus 25 ~~~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~---------------------l~~~~v~vWFqnrR 83 (91)
..++.+|.|+.|++.|+..|+..|..++||+..+|++| |..++ |++.+|++||||||
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeL--A~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREAL--VEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHH--HHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 45667889999999999999999999999999999999 88877 78899999999999
Q ss_pred Hhh
Q psy3735 84 AAF 86 (91)
Q Consensus 84 ~k~ 86 (91)
+.-
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 863
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.58 E-value=3.7e-16 Score=105.22 Aligned_cols=55 Identities=9% Similarity=0.056 Sum_probs=51.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 31 RYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 31 r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
+.++.++..|+..|+..|+.++||+..+|.+| |.++||+++||+|||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~l--a~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEV--AKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHH--HHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHH--HHHHCcCHHHhhHhhhhcccccC
Confidence 34678999999999999999999999999999 99999999999999999999975
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.55 E-value=2.5e-15 Score=82.75 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=49.9
Q ss_pred CCCCCHHHHHHHHHHHhh---CCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhc
Q psy3735 33 RTTFTSFQLEELEKAFSR---THYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTS 88 (91)
Q Consensus 33 R~~~t~~ql~~Le~~f~~---~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~ 88 (91)
-..|+.++...|+.-|.. ++||+..++..| |..+||+..||++||+|+|+++++
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~L--A~~tgLt~~QV~~WF~NrR~R~kk 65 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALL--SQQTHLSTLQVCNWFINARRRLLP 65 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHH--HHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHH--HHHHCcCHHHHHHHHHHHHHHhhh
Confidence 357899999999999987 899999999999 999999999999999999999864
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=99.27 E-value=7.9e-13 Score=61.44 Aligned_cols=17 Identities=6% Similarity=0.202 Sum_probs=15.6
Q ss_pred CcchhccchhHHhhhcC
Q psy3735 73 ELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 73 ~~v~vWFqnrR~k~~~~ 89 (91)
+||+|||||||+||++.
T Consensus 1 rQVkIWFQNRRaK~Kk~ 17 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKR 17 (37)
T ss_dssp CCTTTTTTCSHHHHTSS
T ss_pred CCceeccHHHHHHHHHH
Confidence 58999999999999975
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.94 E-value=0.0032 Score=32.72 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=35.2
Q ss_pred HHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccch
Q psy3735 41 LEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHH 81 (91)
Q Consensus 41 l~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqn 81 (91)
.+.|+.+|.....+.......| +.+..|+..+|+-||-.
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L--~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQL--SQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHH--HHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHH--HHHhCCCHHHHHHHHHh
Confidence 4679999999999999999988 99999999999999943
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=85.92 E-value=0.63 Score=22.57 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccch
Q psy3735 33 RTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHH 81 (91)
Q Consensus 33 R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqn 81 (91)
+..|+.++...+...+.... ........+ |..+|++...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g~-s~~~~~~~v--A~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRNDN-DCKGNQRAT--ARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHCT-TTTTCHHHH--HHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcCC-CcchHHHHH--HHHHCcCHHHHHHHHHH
Confidence 45688888776644444332 111113456 99999999999999643
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=85.48 E-value=0.78 Score=25.65 Aligned_cols=48 Identities=10% Similarity=0.012 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHH
Q psy3735 32 YRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNA 84 (91)
Q Consensus 32 ~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~ 84 (91)
.|..+|.++...+-..+..+.... ...+ |..+|++...|.-|..++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~--A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEI--ARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHH--HHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHH--HHHhCCCHHHHHHHHhchhh
Confidence 567899999877776664444432 2245 88999999999999876654
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=81.87 E-value=1.6 Score=22.82 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=30.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccch
Q psy3735 31 RYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHH 81 (91)
Q Consensus 31 r~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqn 81 (91)
+.+..++.++...+-..+... . ....+ |..+|++...|..|...
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~g-~----s~~~i--A~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHDG-E----SKASV--ARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHHT-C----CHHHH--HHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC-C----CHHHH--HHHHCcCHHHHHHHHHH
Confidence 345678888865555555433 2 23456 99999999999999743
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=76.56 E-value=1.5 Score=23.12 Aligned_cols=46 Identities=7% Similarity=0.051 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 35 TFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 35 ~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
.+++.+...|...|.... .-.++ |..+|++...|+.+...-+.+.+
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eI--A~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQI--ATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHH--HHHHTSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHH--HHHHCcCHHHHHHHHHHHHHHHH
Confidence 356667677665543331 34567 99999999999998877666654
No 84
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=75.50 E-value=0.014 Score=34.87 Aligned_cols=30 Identities=7% Similarity=-0.090 Sum_probs=21.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCH
Q psy3735 27 RKQRRYRTTFTSFQLEELEKAFSRTHYPDV 56 (91)
Q Consensus 27 ~k~~r~R~~~t~~ql~~Le~~f~~~~~p~~ 56 (91)
.+.+|.|+.|+..|+..|+..|+.+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456788999999999999999999998854
No 85
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=73.60 E-value=2.2 Score=20.76 Aligned_cols=46 Identities=13% Similarity=-0.050 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 35 TFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 35 ~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
.+++.+...+...|..+ ..-.++ |..+|++...|+.+...-+.+.+
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eI--A~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADA--AAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHH--HHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHH--HHHHCcCHHHHHHHHHHHHHHHH
Confidence 46777888887665433 134466 99999999999998766666554
No 86
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=70.39 E-value=1.6 Score=19.72 Aligned_cols=41 Identities=7% Similarity=0.010 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhH
Q psy3735 36 FTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLN 83 (91)
Q Consensus 36 ~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR 83 (91)
++.++...+...+... . ...++ |..+|++...|.-|+....
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~i--a~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQL--AIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHH--HHTTSCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHH--HHHHCCCHHHHHHHHHHcc
Confidence 4555555554444433 2 24466 9999999999999986443
No 87
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=68.34 E-value=9.7 Score=21.74 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=35.4
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhCCCCCHHHhhhhhhhhhc--CCCCCcchhccchhH
Q psy3735 30 RRYRTTFTSFQLEELEKAF-SRTHYPDVFTRQCGRFSRQR--SMPGELCVAWTHHLN 83 (91)
Q Consensus 30 ~r~R~~~t~~ql~~Le~~f-~~~~~p~~~~r~~l~~a~~l--~l~~~~v~vWFqnrR 83 (91)
++.|..+|.+|...+-..+ +.++.....+.... ....+ +++...|.-|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~w-a~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEW-FREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHH-HHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHH-HHHHHCCCCcHHHHHHHHhhHH
Confidence 4577899999999998888 56665544333221 12266 778888888876543
No 88
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=67.30 E-value=4.3 Score=21.37 Aligned_cols=42 Identities=7% Similarity=0.029 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHHHhhC-CCCCHHHhhhhhhhhhcCCCCCcchhccc
Q psy3735 33 RTTFTSFQLEELEKAFSRT-HYPDVFTRQCGRFSRQRSMPGELCVAWTH 80 (91)
Q Consensus 33 R~~~t~~ql~~Le~~f~~~-~~p~~~~r~~l~~a~~l~l~~~~v~vWFq 80 (91)
|..||.++....-..+... .. ....+ |..+|++...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~i--a~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQI--ANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHH--HHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHH--HHHHCcCHHHHHHHHH
Confidence 3568888766554444322 11 23456 8999999999999964
No 89
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=67.27 E-value=4 Score=21.63 Aligned_cols=47 Identities=11% Similarity=-0.012 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhc
Q psy3735 34 TTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTS 88 (91)
Q Consensus 34 ~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~ 88 (91)
..+++.+...|...+. . + .-.++ |..+|++...|+.+..+-+.|.+.
T Consensus 26 ~~Lt~~e~~vl~l~~~-g-~----s~~eI--A~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLLSE-G-L----TNKQI--ADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHHHT-T-C----CHHHH--HHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHc-C-C----CHHHH--HHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4588888888887532 2 1 23567 999999999999988777777654
No 90
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=66.09 E-value=3.7 Score=21.11 Aligned_cols=47 Identities=9% Similarity=0.071 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhc
Q psy3735 34 TTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTS 88 (91)
Q Consensus 34 ~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~ 88 (91)
..+++.+...|...+ .. ..-.++ |..+|++...|+.+..+-+.|...
T Consensus 20 ~~Lt~~e~~vl~l~~-~g-----~s~~eI--A~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 20 NQLTPRERDILKLIA-QG-----LPNKMI--ARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGSCHHHHHHHHHHT-TT-----CCHHHH--HHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHH-cC-----CCHHHH--HHHHCcCHHHHHHHHHHHHHHHcC
Confidence 458888888887742 22 234567 999999999999988776666543
No 91
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=66.00 E-value=3.4 Score=18.19 Aligned_cols=40 Identities=10% Similarity=-0.003 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccch
Q psy3735 35 TFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHH 81 (91)
Q Consensus 35 ~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqn 81 (91)
.++.++...+...+... . ...++ |..+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~I--A~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEM--SRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHH--HHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHH--HHHHCcCHHHHHHHHhh
Confidence 46677665555555433 2 24466 99999999999988743
No 92
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=65.12 E-value=3.9 Score=21.62 Aligned_cols=47 Identities=9% Similarity=-0.052 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhh
Q psy3735 32 YRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAF 86 (91)
Q Consensus 32 ~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~ 86 (91)
.-..+|..+...|.... .+ + ...++ |..||++...|+....+-..|+
T Consensus 26 ~~~~Lt~rE~~Vl~l~~-~G-~----s~~eI--A~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE-KG-F----TNQEI--ADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHH-TT-C----CHHHH--HHHHTCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHH-cC-C----CHHHH--HHHHCcCHHHHHHHHHHHHHHH
Confidence 34678999999987765 22 1 34567 9999999999998766555443
No 93
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=64.37 E-value=3.8 Score=22.66 Aligned_cols=46 Identities=7% Similarity=-0.008 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 35 TFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 35 ~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
.+++.+...+...|..+. .-.++ |..+|++...|+.+...-+.+.+
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EI--A~~lgiS~~tV~~~l~ra~~kLr 67 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEI--ADEFGVSRQAVYDNIKRTEKILE 67 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHH--HHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHH--HHHHCcCHHHHHHHHHHHHHHHH
Confidence 467777777776654442 34566 99999999999999877666554
No 94
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=63.48 E-value=4.8 Score=19.67 Aligned_cols=50 Identities=14% Similarity=0.054 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 35 TFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 35 ~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
.+++.+...|...|....+-. ..-.++ |..+|++...|+.+...-+.+.+
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eI--A~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEV--GKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHH--HHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHH--HHHHCcCHHHHHHHHHHHHHHHH
Confidence 467888888877763211111 124567 99999999999988766555554
No 95
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=62.83 E-value=4.3 Score=21.91 Aligned_cols=46 Identities=4% Similarity=-0.143 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhh
Q psy3735 33 RTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAF 86 (91)
Q Consensus 33 R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~ 86 (91)
...+|+.+...|...++ .. .-.++ |..|+++...|+.+..+-+.|+
T Consensus 32 ~~~Lt~re~~Vl~l~~~-G~-----s~~EI--A~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE-GF-----LVTEI--AKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHH-TC-----CHHHH--HHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc-CC-----CHHHH--HHHHCcCHHHHHHHHHHHHHHH
Confidence 46689999999877542 21 23567 9999999999999887666554
No 96
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=62.76 E-value=5.7 Score=19.42 Aligned_cols=47 Identities=9% Similarity=-0.033 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 33 RTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 33 R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
-..+++.+...|... ..+ + .-.++ |..+|++...|..+...-+.+..
T Consensus 9 ~~~L~~~e~~il~~~-~~g-~----s~~eI--A~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFELL-VQD-K----TTKEI--ASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHHH-TTT-C----CHHHH--HHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH-HcC-C----CHHHH--HHHHCCCHHHHHHHHHHHHHHHC
Confidence 356888888888774 222 2 33466 99999999999988876666554
No 97
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=61.98 E-value=3.9 Score=20.44 Aligned_cols=45 Identities=4% Similarity=0.013 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhc
Q psy3735 36 FTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTS 88 (91)
Q Consensus 36 ~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~ 88 (91)
+++.+...|...+ ..+ .-.++ |..+|++...|+.+..+-+.|.+.
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eI--A~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSI--AYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHH--HHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHH--cCC----CHHHH--HHHHCcCHHHHHHHHHHHHHHHcC
Confidence 5666777776532 111 23467 999999999999988776666553
No 98
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=61.85 E-value=5.2 Score=20.85 Aligned_cols=47 Identities=11% Similarity=0.036 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhc
Q psy3735 34 TTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTS 88 (91)
Q Consensus 34 ~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~ 88 (91)
..+++.+...|...+. + + .-.++ |..+|++...|+.+..+-+.|...
T Consensus 28 ~~Lt~~e~~vl~l~~~-g-~----s~~eI--A~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK-G-Y----SNQEI--ASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHT-T-C----CTTHH--HHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHc-C-C----CHHHH--HHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4578888888876432 2 1 24466 999999999999988777776654
No 99
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=61.23 E-value=5.3 Score=19.81 Aligned_cols=48 Identities=6% Similarity=-0.149 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHhhC--CCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 35 TFTSFQLEELEKAFSRT--HYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 35 ~~t~~ql~~Le~~f~~~--~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
.+++.+...+...|... .-. .-.++ |..+|++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~---s~~eI--A~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREH---TLEEV--GAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC---CHHHH--HHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCC---CHHHH--HHHHCCCHHHHHHHHHHHHHHHH
Confidence 46888888888877421 111 23467 99999999999998766555554
No 100
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=57.90 E-value=7 Score=20.21 Aligned_cols=48 Identities=8% Similarity=-0.089 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHhhC--CCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 35 TFTSFQLEELEKAFSRT--HYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 35 ~~t~~ql~~Le~~f~~~--~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
.+++.+...|...|... .-. .-.++ |..+|++...|+.+...-+.+.+
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~---s~~EI--A~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK---TLEEV--GQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC---CHHHH--HHHHTCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCCCCC---CHHHH--HHHHCCCHHHHHHHHHHHHHHHH
Confidence 46777888887776421 112 34466 99999999999998766655554
No 101
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=57.51 E-value=6.4 Score=21.65 Aligned_cols=46 Identities=9% Similarity=-0.076 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 35 TFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 35 ~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
.+++.+...+...|..+. .-.++ |..+|++...|+.+...-+.+.+
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EI--A~~lgiS~~tV~~~l~ra~~kLr 70 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEI--ADTFNVSRQAVYDNIRRTGDLVE 70 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHH--HHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHH--HHHHCcCHHHHHHHHHHHHHHHH
Confidence 356667777666543331 34566 99999999999998876666544
No 102
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=57.49 E-value=24 Score=19.94 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHHHHHhh-----CCCCCHHHhhhhhhhhhcCCCC
Q psy3735 32 YRTTFTSFQLEELEKAFSR-----THYPDVFTRQCGRFSRQRSMPG 72 (91)
Q Consensus 32 ~R~~~t~~ql~~Le~~f~~-----~~~p~~~~r~~l~~a~~l~l~~ 72 (91)
.+..+|.+|+..|...|.. +-+.+..+-..+ ...||..+
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~--l~~lg~~~ 49 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDM--FSSLGRVP 49 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHH--HHHTTSCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHH--HHHcCCCc
Confidence 3467999999999999865 335666666555 66777655
No 103
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=57.28 E-value=6 Score=22.89 Aligned_cols=27 Identities=4% Similarity=-0.095 Sum_probs=21.7
Q ss_pred hhhhhhhhcCCCCCcchhccchhHHhhhc
Q psy3735 60 QCGRFSRQRSMPGELCVAWTHHLNAAFTS 88 (91)
Q Consensus 60 ~~l~~a~~l~l~~~~v~vWFqnrR~k~~~ 88 (91)
.++ |..+|++...|+.+...-+.+.++
T Consensus 155 ~eI--A~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 155 REL--AAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp CCS--TTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHCcCHHHHHHHHHHHHHHHHH
Confidence 456 899999999999998777776653
No 104
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=56.89 E-value=5.3 Score=22.44 Aligned_cols=45 Identities=13% Similarity=0.030 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 35 TFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 35 ~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
.+++.+...+. .|-. ...-.++ |..+|++...|+.+...-+.+.+
T Consensus 109 ~L~~~~r~v~~-~~~~-----g~s~~EI--A~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-----GYSYREI--ATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp HSCHHHHHHHH-HHTT-----TCCHHHH--HHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-----CCCHHHH--HHHHCCCHHHHHHHHHHHHHHHH
Confidence 34555555555 3222 2234567 99999999999998766666554
No 105
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=54.86 E-value=2.2 Score=24.48 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=18.3
Q ss_pred hhhhhhhhcCCCCCcchhccchhHH
Q psy3735 60 QCGRFSRQRSMPGELCVAWTHHLNA 84 (91)
Q Consensus 60 ~~l~~a~~l~l~~~~v~vWFqnrR~ 84 (91)
..+ |..+|++..+++.|.-..|+
T Consensus 73 ~~v--a~~lg~~~~~~RlW~~~~Rq 95 (130)
T 2kvr_A 73 QSL--SQTMGFPQDQIRLWPMQARS 95 (130)
T ss_dssp HHH--HHHHCCCGGGCEEEECCCCB
T ss_pred HHH--HHHhCCCcccEEEEEeecCC
Confidence 455 88999999999999854443
No 106
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=52.14 E-value=4.4 Score=15.34 Aligned_cols=15 Identities=0% Similarity=-0.279 Sum_probs=10.6
Q ss_pred CCcchhccchhHHhh
Q psy3735 72 GELCVAWTHHLNAAF 86 (91)
Q Consensus 72 ~~~v~vWFqnrR~k~ 86 (91)
...|-|-++|||.-.
T Consensus 3 kkpvpiiycnrrtgk 17 (21)
T 8tfv_A 3 KKPVPIIYCNRRTGK 17 (26)
T ss_dssp CCCCCCEEEEGGGTE
T ss_pred CCcccEEEEcCcccc
Confidence 345667789999754
No 107
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=51.27 E-value=9.2 Score=22.23 Aligned_cols=27 Identities=7% Similarity=-0.108 Sum_probs=21.5
Q ss_pred hhhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 59 RQCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 59 r~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
-.++ |..+|++...|+.+...-+.+.+
T Consensus 159 ~~EI--A~~lgis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 159 YEEI--AAIMDCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp HHHH--HHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHCCCHHHHHHHHHHHHHHHH
Confidence 4466 99999999999998877666654
No 108
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=50.34 E-value=4.2 Score=19.26 Aligned_cols=26 Identities=4% Similarity=-0.075 Sum_probs=20.9
Q ss_pred hhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 60 QCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 60 ~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
.++ |..+|++...|+.+..+-+.|..
T Consensus 17 ~eI--A~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 17 HGI--SEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHH--HHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHH--HHHhCCCHHHHHHHHHHHHHHHC
Confidence 466 99999999999998877666654
No 109
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=50.32 E-value=9.6 Score=22.82 Aligned_cols=46 Identities=2% Similarity=-0.090 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 35 TFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 35 ~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
.+++.+...|...|... ..-.++ |..+|++...|+.+...-+.+.+
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EI--A~~lgis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEV--AKILETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHH--HHHTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHH--HHHhCCCHHHHHHHHHHHHHHHH
Confidence 35666666666555322 234567 99999999999998876666654
No 110
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=48.59 E-value=12 Score=19.85 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHH-hhC-CCCCH-HHhhhhhhhhhcCCCCCcchhccc
Q psy3735 33 RTTFTSFQLEELEKAF-SRT-HYPDV-FTRQCGRFSRQRSMPGELCVAWTH 80 (91)
Q Consensus 33 R~~~t~~ql~~Le~~f-~~~-~~p~~-~~r~~l~~a~~l~l~~~~v~vWFq 80 (91)
+..||.++....-..+ ... .+.+. .....+ |..+|+++..|..|-.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~v--a~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSI--APKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH--HHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHH--HHHHCcCHHHHHHHHH
Confidence 3468888775544433 322 12221 234566 9999999999999964
No 111
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=48.23 E-value=10 Score=23.33 Aligned_cols=50 Identities=4% Similarity=-0.130 Sum_probs=30.9
Q ss_pred CCCCCCHHHHH-HHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHH
Q psy3735 32 YRTTFTSFQLE-ELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNA 84 (91)
Q Consensus 32 ~R~~~t~~ql~-~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~ 84 (91)
.+...+.+++. .-...|...-+-... ...| |..+|++...+-..|.|+-.
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~~~~s-~~~I--A~~aGvs~~tlY~hF~~K~~ 75 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDAETFS-VRKL--AASLGTDSSSLYRHFRNKTE 75 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSCCCCC-HHHH--HHHTTSCHHHHHHHTSSHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCcccCC-HHHH--HHHhCcCHHHHHHHcCCHHH
Confidence 34455665543 333346555554444 4456 99999999999999988754
No 112
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=47.92 E-value=6.1 Score=23.73 Aligned_cols=49 Identities=6% Similarity=-0.032 Sum_probs=29.8
Q ss_pred CCCCCHHHH-HHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHH
Q psy3735 33 RTTFTSFQL-EELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNA 84 (91)
Q Consensus 33 R~~~t~~ql-~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~ 84 (91)
+...+.+++ ......|...-|-.. ....| |...|++...+-..|.|+-.
T Consensus 22 r~~~tr~~Il~aA~~l~~~~G~~~~-s~~~I--A~~aGvs~~tlY~~F~~K~~ 71 (211)
T 3fiw_A 22 MTKMNRETVITEALDLLDEVGLDGV-STRRL--AKRLGVEQPSLYWYFRTKRD 71 (211)
T ss_dssp --CCCHHHHHHHHHHHHHHHCGGGC-CHHHH--HHHHTSCTHHHHTTCSSHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCcccC-CHHHH--HHHhCCChhHHHHHcCCHHH
Confidence 344455443 333344555554333 34456 99999999999999988754
No 113
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus}
Probab=46.40 E-value=0.4 Score=27.82 Aligned_cols=43 Identities=12% Similarity=0.148 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccc
Q psy3735 35 TFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTH 80 (91)
Q Consensus 35 ~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFq 80 (91)
.++.+.+..|...-..-.+|.++.+.+| +-.+ +...+|+.|.|
T Consensus 18 tl~eeeL~rLl~lSheik~P~IpLksel--~vEi-LEkG~VRfWlQ 60 (142)
T 2jtd_A 18 SHMEEEMKRLLALSQEHKFPTVPTKSEL--AVEI-LEKGQVRFWMQ 60 (142)
T ss_dssp ---CCCSHHHHHCCCCCCCSSCSSSCEE--EEEE-ETTTEEEEEEE
T ss_pred eeCHHHHHHHHHhhhhccCCcccchhhh--hHHH-HhcCcEEEEEE
Confidence 4455555556555555668888888877 5555 57789999987
No 114
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=46.22 E-value=8.9 Score=22.47 Aligned_cols=40 Identities=5% Similarity=0.025 Sum_probs=28.5
Q ss_pred HHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHH
Q psy3735 42 EELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNA 84 (91)
Q Consensus 42 ~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~ 84 (91)
......|....|-... ...| |...|++...+-..|.|+-.
T Consensus 35 ~aa~~lf~~~G~~~~t-v~~I--A~~agvs~~t~Y~~F~sK~~ 74 (215)
T 2qko_A 35 NAAIEVLAREGARGLT-FRAV--DVEANVPKGTASNYFPSRDD 74 (215)
T ss_dssp HHHHHHHHHTCTTTCC-HHHH--HHHSSSTTTCHHHHCSCHHH
T ss_pred HHHHHHHHHhChhhcc-HHHH--HHHcCCCcchHHHhCCCHHH
Confidence 3344457666665443 4456 99999999999999988754
No 115
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=44.49 E-value=9.5 Score=17.57 Aligned_cols=36 Identities=8% Similarity=-0.068 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccc
Q psy3735 38 SFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTH 80 (91)
Q Consensus 38 ~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFq 80 (91)
+++...+...+..+ . ...++ |..+|++...|..|..
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eI--A~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQI--ANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHH--HHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHH--HHHHCcCHHHHHHHHH
Confidence 55555555444333 2 34466 9999999999988863
No 116
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=43.94 E-value=13 Score=22.82 Aligned_cols=47 Identities=9% Similarity=0.064 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 33 RTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 33 R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
...+|+.+...|.-.. ... .-.++ |..||++...|+....|-+.|.-
T Consensus 173 ~~~Lt~~e~~vl~~~~-~g~-----s~~eI--a~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 173 KQMLSPREMLCLVWAS-KGK-----TASVT--ANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGSCCHHHHHHHHHHH-TTC-----CHHHH--HHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHH-cCC-----CHHHH--HHHHCcCHHHHHHHHHHHHHHhC
Confidence 3468888888886643 221 34566 89999999999998887777653
No 117
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=43.87 E-value=3.8 Score=22.31 Aligned_cols=11 Identities=18% Similarity=0.441 Sum_probs=8.7
Q ss_pred CcchhccchhH
Q psy3735 73 ELCVAWTHHLN 83 (91)
Q Consensus 73 ~~v~vWFqnrR 83 (91)
.-|+||.||-.
T Consensus 52 gdvkvwmqnle 62 (127)
T 2jpf_A 52 GDVKVWMQNLE 62 (127)
T ss_dssp HHHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 46899999954
No 118
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=41.78 E-value=17 Score=22.66 Aligned_cols=48 Identities=4% Similarity=-0.074 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhcC
Q psy3735 34 TTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTSS 89 (91)
Q Consensus 34 ~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~~ 89 (91)
..+++.+...|...+ ..+ .-.++ |..||++...|++...+-+.|.+..
T Consensus 196 ~~L~~~erevl~L~~--~G~----s~~EI--A~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCIR--KGL----SSKEI--AATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHHH--TTC----CHHHH--HHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHH--HHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 468898888887753 222 34567 9999999999999988887777654
No 119
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=39.52 E-value=21 Score=17.48 Aligned_cols=41 Identities=12% Similarity=-0.032 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhH
Q psy3735 34 TTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLN 83 (91)
Q Consensus 34 ~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR 83 (91)
..++.+.+..+..... . ...++ |..+|++...|.-|-.+++
T Consensus 9 ~~~~g~~lr~~R~~~g----l---tq~el--A~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLS----L---TQKEA--SEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTT----C---CHHHH--HHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcC----C---CHHHH--HHHhCcCHHHHHHHHcCCC
Confidence 3577777777754322 2 24556 8999999999998876643
No 120
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=39.38 E-value=20 Score=19.60 Aligned_cols=41 Identities=10% Similarity=0.002 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccch
Q psy3735 34 TTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHH 81 (91)
Q Consensus 34 ~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqn 81 (91)
..++.++...+...+..+. ....+ |..+|++...|.-|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G~-----s~~~i--a~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNV-----SLHEM--SRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTC-----CHHHH--HHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcCC-----CHHHH--HHHHCcCHHHHHHHHHc
Confidence 4577877766666664432 23456 88999999999999854
No 121
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=37.76 E-value=20 Score=21.90 Aligned_cols=46 Identities=7% Similarity=-0.196 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhh
Q psy3735 33 RTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAF 86 (91)
Q Consensus 33 R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~ 86 (91)
...+|+.+...|.-.. .. ..-.++ |..||++...|+....|-+.|.
T Consensus 171 ~~~Lt~~e~~vl~~~~-~g-----~s~~eI--a~~l~is~~tV~~~~~~~~~kl 216 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIA-VG-----KTMEEI--ADVEGVKYNSVRVKLREAMKRF 216 (234)
T ss_dssp CCCCCHHHHHHHHHHT-TT-----CCHHHH--HHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-cC-----CCHHHH--HHHHCcCHHHHHHHHHHHHHHh
Confidence 3568998888886643 22 134567 8999999999999887777664
No 122
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=37.06 E-value=6 Score=20.27 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=15.3
Q ss_pred hhhhhhhhcCCCCCcchhccc
Q psy3735 60 QCGRFSRQRSMPGELCVAWTH 80 (91)
Q Consensus 60 ~~l~~a~~l~l~~~~v~vWFq 80 (91)
.++ |..+|++...++.|-.
T Consensus 9 ~e~--A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 9 RTI--ARMTGIREATLRAWER 27 (81)
T ss_dssp HHH--HHTTSTTHHHHHHHHH
T ss_pred HHH--HHHHCcCHHHHHHHHH
Confidence 355 8899999999999953
No 123
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=34.86 E-value=8.4 Score=23.09 Aligned_cols=39 Identities=8% Similarity=-0.003 Sum_probs=27.2
Q ss_pred HHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHH
Q psy3735 43 ELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNA 84 (91)
Q Consensus 43 ~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~ 84 (91)
.....|...-|-... ...| |...|++...|-..|.|+-.
T Consensus 52 aA~~lf~e~G~~~~t-~~~I--A~~aGvs~~tlY~~F~sK~~ 90 (236)
T 3q0w_A 52 TAENLLEDRPLADIS-VDDL--AKGAGISRPTFYFYFPSKEA 90 (236)
T ss_dssp HHHHHHHHSCGGGCC-HHHH--HHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHcCcccCC-HHHH--HHHhCCcHHHHHHHCCCHHH
Confidence 334446666554333 4456 99999999999999988754
No 124
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=33.75 E-value=34 Score=20.75 Aligned_cols=49 Identities=0% Similarity=-0.150 Sum_probs=30.8
Q ss_pred CCCCCHHHH-HHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHH
Q psy3735 33 RTTFTSFQL-EELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNA 84 (91)
Q Consensus 33 R~~~t~~ql-~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~ 84 (91)
+...+.+++ ......|...-|-... ...| |..+|++...+-..|.|+-.
T Consensus 13 ~~~~~r~~Il~aA~~l~~~~G~~~~s-~~~I--A~~aGvs~~tlY~hF~~K~~ 62 (237)
T 2hxo_A 13 QEPLSRERIVGAAVELLDTVGERGLT-FRAL--AERLATGPGAIYWHITGKAE 62 (237)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTTTCC-HHHH--HHHHTSCGGGGGGTCCCHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCcccCC-HHHH--HHHHCCChHHHHHhcCCHHH
Confidence 344555543 3333446666665444 3456 99999999999999988754
No 125
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=32.98 E-value=25 Score=19.35 Aligned_cols=23 Identities=4% Similarity=-0.182 Sum_probs=17.8
Q ss_pred hhhhhhhhhcCCCCCcchhccchhH
Q psy3735 59 RQCGRFSRQRSMPGELCVAWTHHLN 83 (91)
Q Consensus 59 r~~l~~a~~l~l~~~~v~vWFqnrR 83 (91)
..+| |..+|++...|.-|-.+++
T Consensus 87 q~~l--a~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 87 QKEA--SEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp HHHH--HHHHCSCTTHHHHHHHTSS
T ss_pred HHHH--HHHHCCCHHHHHHHHCCCC
Confidence 3456 8899999999999876643
No 126
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=32.50 E-value=32 Score=19.48 Aligned_cols=41 Identities=7% Similarity=-0.113 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccch
Q psy3735 34 TTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHH 81 (91)
Q Consensus 34 ~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqn 81 (91)
..++.++...+...+.... ....+ |..+|++...|..|...
T Consensus 24 ~~~s~e~r~~ii~l~~~G~-----s~~~I--A~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQGV-----RPCDI--SRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHTC-----CHHHH--HHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcCC-----CHHHH--HHHHCcCHHHHHHHHHH
Confidence 3578877766666564431 23356 88999999999999854
No 127
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=32.02 E-value=8.6 Score=18.54 Aligned_cols=19 Identities=5% Similarity=0.298 Sum_probs=16.3
Q ss_pred hhhhhhhhhcCCCCCcchhcc
Q psy3735 59 RQCGRFSRQRSMPGELCVAWT 79 (91)
Q Consensus 59 r~~l~~a~~l~l~~~~v~vWF 79 (91)
...| |..+|++...|--|.
T Consensus 13 q~~l--A~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAV--AKALGISDAAVSQWK 31 (61)
T ss_dssp HHHH--HHHHTCCHHHHHHCC
T ss_pred HHHH--HHHhCCCHHHHHHHH
Confidence 3456 999999999999997
No 128
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=31.66 E-value=33 Score=18.14 Aligned_cols=41 Identities=7% Similarity=-0.102 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchh
Q psy3735 35 TFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHL 82 (91)
Q Consensus 35 ~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnr 82 (91)
.++.++...+...+... + + ...+ |..+|++...|..|...-
T Consensus 17 ~~s~~~r~~i~~~~~~g-~-s---~~~i--a~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAADG-I-R---PCVI--SRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCCHHHHHHHHHHHHTT-C-C---HHHH--HHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-C-C---HHHH--HHHHCcCHHHHHHHHHHH
Confidence 57777766665555432 2 2 3356 889999999999998543
No 129
>1mij_A Protein prospero; homeodomain, DNA-binding domain, prospero domain, 4-helix bundle, transcription; HET: MSE; 2.05A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1xpx_A
Probab=30.68 E-value=53 Score=19.15 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCC---CCCcchhccchhHH
Q psy3735 34 TTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSM---PGELCVAWTHHLNA 84 (91)
Q Consensus 34 ~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l---~~~~v~vWFqnrR~ 84 (91)
+.+|+..|..-.-.|--..||+......- -..+.. .-.|+--||-|-|.
T Consensus 2 ~~Ltp~HLkKAKLMFfytRYPsS~~LK~y--FpDvkFnr~~TsQLiKWFSNFRE 53 (152)
T 1mij_A 2 STLTPMHLRKAKLMFFWVRYPSSAVLKMY--FPDIKFNKNNTAQLVKWFSNFRE 53 (152)
T ss_dssp CCCCHHHHHHHHHHTTTCSSCCHHHHHHH--CTTSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHhhhhheeeecCCcHHHHHHh--CCchhhhhhhHHHHHHHHHhhHH
Confidence 45788888888888999999988755432 112222 23677789999874
No 130
>2laq_A Accessory gland-specific peptide 70A; hydroxiproline rich, signaling protein; HET: HYP; NMR {Drosophila melanogaster}
Probab=30.11 E-value=10 Score=16.52 Aligned_cols=11 Identities=0% Similarity=0.006 Sum_probs=7.1
Q ss_pred hhHHhhhcCCC
Q psy3735 81 HLNAAFTSSKY 91 (91)
Q Consensus 81 nrR~k~~~~~~ 91 (91)
|-|.||++.|+
T Consensus 18 ~~r~KWCRLNl 28 (36)
T 2laq_A 18 NPRDKWCRLNL 28 (36)
T ss_dssp STTSSCCSSCC
T ss_pred cchhhhheecc
Confidence 55677777654
No 131
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=29.66 E-value=30 Score=21.70 Aligned_cols=46 Identities=4% Similarity=-0.106 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 34 TTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 34 ~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
..+|+.+.+.|.-.. .. ....++ |..||++...|+....|-+.|+.
T Consensus 196 ~~Lt~re~~vl~~~~-~G-----~s~~eI--A~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 196 MPLSQREYDIFHWMS-RG-----KTNWEI--ATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCHHHHHHHHHHH-TT-----CCHHHH--HHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHH-cC-----CCHHHH--HHHHCcCHHHHHHHHHHHHHHhC
Confidence 578888888887664 22 134567 99999999999998877776653
No 132
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=29.14 E-value=63 Score=16.86 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHhh-----CCCCCHHHhhhhhhhhhcCC--CCCcchhcc
Q psy3735 33 RTTFTSFQLEELEKAFSR-----THYPDVFTRQCGRFSRQRSM--PGELCVAWT 79 (91)
Q Consensus 33 R~~~t~~ql~~Le~~f~~-----~~~p~~~~r~~l~~a~~l~l--~~~~v~vWF 79 (91)
...++.+++..|...|.. +-+.+..+-..+ ...+|. +...|+.+|
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~--l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTA--MRSLGYMPNEVELEVII 78 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHH--HHHHTCCCCTTTHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHH--HHHhCCCCCHHHHHHHH
Confidence 456889999999999866 345677666655 566664 556666665
No 133
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=29.04 E-value=31 Score=19.89 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHHhh-----CCCCCHHHhhhhhhhhhcCCCC
Q psy3735 33 RTTFTSFQLEELEKAFSR-----THYPDVFTRQCGRFSRQRSMPG 72 (91)
Q Consensus 33 R~~~t~~ql~~Le~~f~~-----~~~p~~~~r~~l~~a~~l~l~~ 72 (91)
.+.||.+|+..|...|.. +-+.+..+-..+ ...+|+.+
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~--l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATV--MRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHH--HHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH--HHHcCCCh
Confidence 356788888888888765 234555555444 55566544
No 134
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=28.87 E-value=12 Score=21.35 Aligned_cols=47 Identities=9% Similarity=-0.018 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhhc
Q psy3735 35 TFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFTS 88 (91)
Q Consensus 35 ~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~~ 88 (91)
.+++.+...|.-. |.....-.++ |..+|++...|+.....-|.+.++
T Consensus 93 ~Lp~~~r~vl~L~-----~~~g~s~~EI--A~~lgis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 93 RMTPLSRQALLLT-----AMEGFSPEDA--AYLIEVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp TSCTTHHHHHTTT-----SSSCCCHHHH--HHTTTSCHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHH-----HHcCCCHHHH--HHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4566665555322 2222234567 999999999999988766666553
No 135
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=28.83 E-value=7.2 Score=18.31 Aligned_cols=22 Identities=0% Similarity=-0.185 Sum_probs=17.3
Q ss_pred hhhhhhhhhcCCCCCcchhccchh
Q psy3735 59 RQCGRFSRQRSMPGELCVAWTHHL 82 (91)
Q Consensus 59 r~~l~~a~~l~l~~~~v~vWFqnr 82 (91)
...+ |..+|++...|.-|..++
T Consensus 17 ~~~l--A~~~gis~~~i~~~e~g~ 38 (66)
T 2xi8_A 17 QSEL--AALLEVSRQTINGIEKNK 38 (66)
T ss_dssp HHHH--HHHHTSCHHHHHHHHTTS
T ss_pred HHHH--HHHHCcCHHHHHHHHcCC
Confidence 3456 889999999998888654
No 136
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=28.41 E-value=24 Score=21.02 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 34 TTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 34 ~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
..+|+-+...|..... + ....++ |..++++.+.|++...|=+.|..
T Consensus 148 ~~LT~rE~~vL~~l~~-g-----~s~~eI--a~~l~is~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSE-G-----LTNKQI--ADRMFLAEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp TTSCHHHHHHHHHHHT-T-----CCHHHH--HHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHC-C-----CCHHHH--HHHhCCCHHHHHHHHHHHHHHhC
Confidence 4588888888775543 2 245677 89999999999998887777753
No 137
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=28.16 E-value=23 Score=21.73 Aligned_cols=49 Identities=2% Similarity=-0.081 Sum_probs=31.6
Q ss_pred CCCCCHHHHH-HHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHH
Q psy3735 33 RTTFTSFQLE-ELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNA 84 (91)
Q Consensus 33 R~~~t~~ql~-~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~ 84 (91)
+...+.+++. .....|...-|-... ...| |..+|++...+-..|.|+-.
T Consensus 16 r~~~tr~~Il~AA~~l~~e~G~~~~S-~~~I--A~~aGvs~~tlY~hF~sK~~ 65 (243)
T 2g7l_A 16 KPALSRRWIVDTAVALMRAEGLEKVT-MRRL--AQELDTGPASLYVYVANTAE 65 (243)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCSSSCC-HHHH--HHHTTSCHHHHTTTCCSHHH
T ss_pred CcccCHHHHHHHHHHHHHhcCchhcC-HHHH--HHHHCCChhHHHHHcCCHHH
Confidence 3445555433 333446666554443 3456 99999999999999988754
No 138
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=27.99 E-value=7.7 Score=18.32 Aligned_cols=23 Identities=4% Similarity=0.105 Sum_probs=18.0
Q ss_pred hhhhhhhhhcCCCCCcchhccchhH
Q psy3735 59 RQCGRFSRQRSMPGELCVAWTHHLN 83 (91)
Q Consensus 59 r~~l~~a~~l~l~~~~v~vWFqnrR 83 (91)
...+ |..+|++...|.-|..+++
T Consensus 21 ~~~l--A~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAAL--GKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHH--HHHHTSCHHHHHHHHTTSS
T ss_pred HHHH--HHHHCCCHHHHHHHHcCCC
Confidence 4456 9999999999998886643
No 139
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=27.40 E-value=7.3 Score=19.48 Aligned_cols=23 Identities=4% Similarity=-0.009 Sum_probs=18.1
Q ss_pred hhhhhhhhhcCCCCCcchhccchhH
Q psy3735 59 RQCGRFSRQRSMPGELCVAWTHHLN 83 (91)
Q Consensus 59 r~~l~~a~~l~l~~~~v~vWFqnrR 83 (91)
...| |..+|++...|.-|..+.+
T Consensus 14 q~~l--A~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSAL--AASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHH--HHHHTCCHHHHHHHHHHTC
T ss_pred HHHH--HHHHCCCHHHHHHHHHCCC
Confidence 3456 9999999999999986544
No 140
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=27.22 E-value=36 Score=20.84 Aligned_cols=45 Identities=11% Similarity=-0.163 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhh
Q psy3735 34 TTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAF 86 (91)
Q Consensus 34 ~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~ 86 (91)
..+|+.+...|.-.. .+ ..-.++ |..||+++..|+.-..|-+.|.
T Consensus 174 ~~Lt~re~~vl~~~~-~G-----~s~~eI--a~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 174 VRLTARETEMLKWTA-VG-----KTYGEI--GLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp CCCCHHHHHHHHHHH-TT-----CCHHHH--HHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH-cC-----CCHHHH--HHHHCCCHHHHHHHHHHHHHHh
Confidence 457777777776542 22 134566 8899999999988766655554
No 141
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=26.38 E-value=14 Score=22.08 Aligned_cols=27 Identities=4% Similarity=-0.108 Sum_probs=0.0
Q ss_pred HHhhhhhhhhhcCCCCCcchhccchhHHh
Q psy3735 57 FTRQCGRFSRQRSMPGELCVAWTHHLNAA 85 (91)
Q Consensus 57 ~~r~~l~~a~~l~l~~~~v~vWFqnrR~k 85 (91)
..-.++ |..+|++...|+.+...-+.+
T Consensus 215 ~s~~EI--A~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 215 QTQSEV--ASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp -----------------------------
T ss_pred CCHHHH--HHHHCcCHHHHHHHHHHHHHH
Confidence 345677 999999999999887655544
No 142
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=26.16 E-value=8.4 Score=18.41 Aligned_cols=23 Identities=0% Similarity=-0.138 Sum_probs=18.1
Q ss_pred hhhhhhhhhcCCCCCcchhccchhH
Q psy3735 59 RQCGRFSRQRSMPGELCVAWTHHLN 83 (91)
Q Consensus 59 r~~l~~a~~l~l~~~~v~vWFqnrR 83 (91)
...| |..+|++...|.-|..+++
T Consensus 19 q~~l--A~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTEL--ATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHH--HHHHTSCHHHHHHHHTTCC
T ss_pred HHHH--HHHhCCCHHHHHHHHcCCC
Confidence 3456 8999999999998886654
No 143
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=25.40 E-value=80 Score=17.80 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHhh----CCCCCHHHhhhhhhhhhcCCCCCcchhccchh
Q psy3735 36 FTSFQLEELEKAFSR----THYPDVFTRQCGRFSRQRSMPGELCVAWTHHL 82 (91)
Q Consensus 36 ~t~~ql~~Le~~f~~----~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnr 82 (91)
+|..++..|-..+.. ..+|+.. .| |..+|+++..|.-..++-
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~~---~L--A~~~~~s~~~v~~~L~~L 75 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTPN---QL--QEGMSISVEECTNRLRMF 75 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHH---HH--HTTSSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHH---HH--HHHHCcCHHHHHHHHHHH
Confidence 566666666655543 4556554 56 999999998887666543
No 144
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=25.18 E-value=16 Score=20.48 Aligned_cols=20 Identities=5% Similarity=0.062 Sum_probs=16.6
Q ss_pred hhhhcCCCCCcchhccchhH
Q psy3735 64 FSRQRSMPGELCVAWTHHLN 83 (91)
Q Consensus 64 ~a~~l~l~~~~v~vWFqnrR 83 (91)
++...|++..+++.||-..|
T Consensus 70 Y~er~Gl~~~~irFlFDG~r 89 (115)
T 3kyd_D 70 YCQRQGVPMNSLRFLFEGQR 89 (115)
T ss_dssp HHHHHTCCTTSEEEEETTEE
T ss_pred HHHHhCCChhhEEEEECCeE
Confidence 37888999999999997654
No 145
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=25.16 E-value=49 Score=18.39 Aligned_cols=41 Identities=7% Similarity=-0.097 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccch
Q psy3735 34 TTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHH 81 (91)
Q Consensus 34 ~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqn 81 (91)
..++.++...+...+... . ....+ |..+|++...|.-|...
T Consensus 31 ~~~s~e~r~~iv~~~~~G-~----s~~~i--A~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQG-V----RPCDI--SRQLRVSHGCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHHTT-C----CHHHH--HHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHH--HHHHCcCHHHHHHHHHH
Confidence 357887766666555432 2 23456 89999999999999854
No 146
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=24.80 E-value=9.5 Score=18.53 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=17.7
Q ss_pred hhhhhhhhhcCCCCCcchhccchhH
Q psy3735 59 RQCGRFSRQRSMPGELCVAWTHHLN 83 (91)
Q Consensus 59 r~~l~~a~~l~l~~~~v~vWFqnrR 83 (91)
...| |..+|++...|.-|..+++
T Consensus 26 ~~~l--A~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWL--AEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHH--HHHHTCCHHHHHHHHTTSS
T ss_pred HHHH--HHHHCcCHHHHHHHHcCCC
Confidence 4456 8899999999988876543
No 147
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.70 E-value=79 Score=16.12 Aligned_cols=44 Identities=18% Similarity=0.100 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcc
Q psy3735 32 YRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELC 75 (91)
Q Consensus 32 ~R~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v 75 (91)
....|++.|+..|+..--...-|+.-+-+++.--..|++.+..|
T Consensus 25 G~R~Fs~iql~RL~kLGI~ktdP~~LT~eEi~~FaRLdIDP~TI 68 (71)
T 2eo2_A 25 GVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFARLNIDPATI 68 (71)
T ss_dssp SSCCCCHHHHHHHHHHTCCCCSTTTCCHHHHHHHHHTCCCSTTC
T ss_pred CeeecCHHHHHHHHHcCCCCCCcccCCHHHHhhceecccCccce
Confidence 34579999999999875444455543333331133567766554
No 148
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=24.61 E-value=11 Score=18.27 Aligned_cols=22 Identities=5% Similarity=-0.029 Sum_probs=17.5
Q ss_pred hhhhhhhhhcCCCCCcchhccchh
Q psy3735 59 RQCGRFSRQRSMPGELCVAWTHHL 82 (91)
Q Consensus 59 r~~l~~a~~l~l~~~~v~vWFqnr 82 (91)
..+| |..+|++...|.-|..++
T Consensus 24 q~~l--A~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWL--TETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHH--HHHTTCCHHHHHHHHTTS
T ss_pred HHHH--HHHHCcCHHHHHHHHcCC
Confidence 4456 999999999998888664
No 149
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=24.24 E-value=12 Score=18.65 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=18.2
Q ss_pred hhhhhhhhhcCCCCCcchhccchhH
Q psy3735 59 RQCGRFSRQRSMPGELCVAWTHHLN 83 (91)
Q Consensus 59 r~~l~~a~~l~l~~~~v~vWFqnrR 83 (91)
...+ |..+|++...|.-|..+++
T Consensus 28 q~~l--A~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 28 YESV--ADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHH--HHHTTSCHHHHHHHHTTSS
T ss_pred HHHH--HHHhCcCHHHHHHHHcCCC
Confidence 3456 9999999999998886654
No 150
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=23.97 E-value=17 Score=17.78 Aligned_cols=17 Identities=6% Similarity=0.067 Sum_probs=13.8
Q ss_pred hhhcCCCCCcchhccch
Q psy3735 65 SRQRSMPGELCVAWTHH 81 (91)
Q Consensus 65 a~~l~l~~~~v~vWFqn 81 (91)
|..||++...|.-|-.+
T Consensus 9 a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 9 ADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHTTCCHHHHHHHTTT
T ss_pred HHHHCcCHHHHHHHHHC
Confidence 88888888888888754
No 151
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=23.85 E-value=61 Score=14.57 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHHh
Q psy3735 34 TTFTSFQLEELEKAFS 49 (91)
Q Consensus 34 ~~~t~~ql~~Le~~f~ 49 (91)
.-|+++.+..|+...+
T Consensus 15 egfspeelaaleselq 30 (48)
T 1g6u_A 15 EGFSPEELAALESELQ 30 (48)
T ss_dssp TTCSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 4689999999987653
No 152
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=22.65 E-value=11 Score=18.20 Aligned_cols=23 Identities=4% Similarity=0.105 Sum_probs=17.8
Q ss_pred hhhhhhhhhcCCCCCcchhccchhH
Q psy3735 59 RQCGRFSRQRSMPGELCVAWTHHLN 83 (91)
Q Consensus 59 r~~l~~a~~l~l~~~~v~vWFqnrR 83 (91)
...| |..+|++...|.-|...++
T Consensus 21 ~~~l--A~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAAL--GKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHH--HHHHTSCHHHHHHHHTTSS
T ss_pred HHHH--HHHHCcCHHHHHHHHcCCC
Confidence 4456 8999999999988876543
No 153
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=22.61 E-value=11 Score=17.82 Aligned_cols=23 Identities=0% Similarity=-0.161 Sum_probs=17.6
Q ss_pred hhhhhhhhhcCCCCCcchhccchhH
Q psy3735 59 RQCGRFSRQRSMPGELCVAWTHHLN 83 (91)
Q Consensus 59 r~~l~~a~~l~l~~~~v~vWFqnrR 83 (91)
...+ |..+|++...|.-|..+++
T Consensus 17 q~~l--A~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAEL--AQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHH--HHHHTSCHHHHHHHHTTSC
T ss_pred HHHH--HHHHCcCHHHHHHHHcCCC
Confidence 3456 8899999998888876544
No 154
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=22.16 E-value=28 Score=19.86 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=29.4
Q ss_pred HHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHH
Q psy3735 41 LEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNA 84 (91)
Q Consensus 41 l~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~ 84 (91)
+..-...|...-| . .....| |...|++...+-..|.|+-.
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~I--A~~agvs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERI--AREAGVGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHH--HHHTTCCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHhcCc-C-CCHHHH--HHHhCCChHHHHHHcCCHHH
Confidence 3344445777666 4 456677 99999999999999988754
No 155
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=22.11 E-value=39 Score=19.35 Aligned_cols=37 Identities=8% Similarity=-0.037 Sum_probs=28.2
Q ss_pred HHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHH
Q psy3735 44 LEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNA 84 (91)
Q Consensus 44 Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~ 84 (91)
-...|...-| . .....| |...|++...+-..|.|+-.
T Consensus 22 A~~lf~~~G~-~-~t~~~I--A~~agvs~~tlY~~F~sK~~ 58 (196)
T 2qwt_A 22 AYDTFAAEGL-G-VPMDEI--ARRAGVGAGTVYRHFPTKQA 58 (196)
T ss_dssp HHHHHHHTCT-T-SCHHHH--HHHTTSCHHHHHHHCSSHHH
T ss_pred HHHHHHhcCC-C-CCHHHH--HHHhCCCHHHHHHHCCCHHH
Confidence 3445777777 5 455667 99999999999999988754
No 156
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=22.10 E-value=11 Score=18.29 Aligned_cols=22 Identities=0% Similarity=-0.212 Sum_probs=17.5
Q ss_pred hhhhhhhhhcCCCCCcchhccchh
Q psy3735 59 RQCGRFSRQRSMPGELCVAWTHHL 82 (91)
Q Consensus 59 r~~l~~a~~l~l~~~~v~vWFqnr 82 (91)
...| |..+|++...|.-|...+
T Consensus 26 q~~l--A~~~gis~~~i~~~e~g~ 47 (77)
T 2b5a_A 26 QEEL--ADLAGLHRTYISEVERGD 47 (77)
T ss_dssp HHHH--HHHHTCCHHHHHHHHTTC
T ss_pred HHHH--HHHHCCCHHHHHHHHCCC
Confidence 4456 899999999998887654
No 157
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=21.63 E-value=14 Score=19.96 Aligned_cols=15 Identities=0% Similarity=-0.082 Sum_probs=12.9
Q ss_pred hhhcCCCCCcchhcc
Q psy3735 65 SRQRSMPGELCVAWT 79 (91)
Q Consensus 65 a~~l~l~~~~v~vWF 79 (91)
|..+|++...++.|-
T Consensus 9 A~~~gvs~~tLR~ye 23 (109)
T 1r8d_A 9 AEISGVSIRTLHHYD 23 (109)
T ss_dssp HHHHSCCHHHHHHHH
T ss_pred HHHHCcCHHHHHHHH
Confidence 888899999998884
No 158
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=21.53 E-value=17 Score=25.62 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=18.9
Q ss_pred hhhhhhhhhcCCCCCcchhccchhHH
Q psy3735 59 RQCGRFSRQRSMPGELCVAWTHHLNA 84 (91)
Q Consensus 59 r~~l~~a~~l~l~~~~v~vWFqnrR~ 84 (91)
.+.+ |..+|++..+++.|....|+
T Consensus 52 ~~~v--a~~lg~~~~~~RlW~~~~Rq 75 (530)
T 2ylm_A 52 VQSL--SQTMGFPQDQIRLWPMQARS 75 (530)
T ss_dssp HHHH--HHHHTSCGGGEEEEEEEECT
T ss_pred HHHH--HHHhCcCcccEEEEEEEcCC
Confidence 3456 99999999999999865443
No 159
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=21.40 E-value=16 Score=18.56 Aligned_cols=21 Identities=5% Similarity=0.066 Sum_probs=17.3
Q ss_pred hhhhhhhhhcCCCCCcchhccch
Q psy3735 59 RQCGRFSRQRSMPGELCVAWTHH 81 (91)
Q Consensus 59 r~~l~~a~~l~l~~~~v~vWFqn 81 (91)
...| |..||++...|--|..+
T Consensus 13 ~~~l--A~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKA--AVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHH--HHHHTSCHHHHHHHHHH
T ss_pred HHHH--HHHHCCCHHHHHHHHhC
Confidence 4556 99999999999999743
No 160
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=21.39 E-value=25 Score=17.71 Aligned_cols=44 Identities=9% Similarity=-0.090 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHhh-----CCCCCHHHhhhhhhhhhcCCCCCcchhcc
Q psy3735 34 TTFTSFQLEELEKAFSR-----THYPDVFTRQCGRFSRQRSMPGELCVAWT 79 (91)
Q Consensus 34 ~~~t~~ql~~Le~~f~~-----~~~p~~~~r~~l~~a~~l~l~~~~v~vWF 79 (91)
..++.++...|...|.. +-+.+..+-..+ ...+|++...+..+|
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~--l~~~g~~~~~~~~~~ 67 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRAL--CTELRVRPADAEAVF 67 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHH--HHHTTCCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHH--HHHcCcCHHHHHHHH
Confidence 45778888888888865 234555555554 667787776666665
No 161
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=21.19 E-value=14 Score=19.92 Aligned_cols=15 Identities=0% Similarity=-0.117 Sum_probs=12.9
Q ss_pred hhhcCCCCCcchhcc
Q psy3735 65 SRQRSMPGELCVAWT 79 (91)
Q Consensus 65 a~~l~l~~~~v~vWF 79 (91)
|..+|++...++.|-
T Consensus 8 A~~~gvs~~tLR~ye 22 (108)
T 2vz4_A 8 AGFAGVTVRTLHHYD 22 (108)
T ss_dssp HHHHTCCHHHHHHHH
T ss_pred HHHHCcCHHHHHHHH
Confidence 888899999998884
No 162
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=21.11 E-value=21 Score=17.68 Aligned_cols=19 Identities=0% Similarity=-0.177 Sum_probs=15.2
Q ss_pred hhhcCCCCCcchhccchhH
Q psy3735 65 SRQRSMPGELCVAWTHHLN 83 (91)
Q Consensus 65 a~~l~l~~~~v~vWFqnrR 83 (91)
+...|+++.+++.+|-..|
T Consensus 32 ~~~~gi~~~~~rf~fdG~~ 50 (72)
T 1wm3_A 32 CERQGLSMRQIRFRFDGQP 50 (72)
T ss_dssp HHHHTCCTTTCEEEETTEE
T ss_pred HHHhCCCcceEEEEECCEE
Confidence 7777888899999886654
No 163
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=20.80 E-value=28 Score=18.16 Aligned_cols=21 Identities=10% Similarity=-0.070 Sum_probs=15.9
Q ss_pred HhhhhhhhhhcCCCCCcchhccc
Q psy3735 58 TRQCGRFSRQRSMPGELCVAWTH 80 (91)
Q Consensus 58 ~r~~l~~a~~l~l~~~~v~vWFq 80 (91)
....| |..+|++++.+.-.|+
T Consensus 21 ~~~~l--A~~~~~S~~~l~r~fk 41 (103)
T 3lsg_A 21 TLSVL--SEKLDLSSGYLSIMFK 41 (103)
T ss_dssp CHHHH--HHHTTCCHHHHHHHHH
T ss_pred CHHHH--HHHHCcCHHHHHHHHH
Confidence 34566 8899999888877774
No 164
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=20.59 E-value=70 Score=17.04 Aligned_cols=49 Identities=12% Similarity=0.005 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhh
Q psy3735 35 TFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAF 86 (91)
Q Consensus 35 ~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~ 86 (91)
.+++.+...+...|..+.. ....-.++ |..+|++...|+..-..-..+.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EI--A~~lgiS~~tVr~~~~rAlkkL 67 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEV--GKQFDVTRERIRQIEAKALRKL 67 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHH--HHHHCcCHHHHHHHHHHHHHHH
Confidence 3566666777666643211 11234567 9999999999987654444443
No 165
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=20.53 E-value=14 Score=17.99 Aligned_cols=23 Identities=4% Similarity=-0.194 Sum_probs=18.2
Q ss_pred hhhhhhhhhcCCCCCcchhccchhH
Q psy3735 59 RQCGRFSRQRSMPGELCVAWTHHLN 83 (91)
Q Consensus 59 r~~l~~a~~l~l~~~~v~vWFqnrR 83 (91)
...| |..+|++...|.-|..+++
T Consensus 23 q~~l--A~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRV--ATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHH--HHHHTCCHHHHHHHHCTTC
T ss_pred HHHH--HHHHCcCHHHHHHHHcCCC
Confidence 3456 9999999999988887654
No 166
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=20.52 E-value=51 Score=19.17 Aligned_cols=46 Identities=9% Similarity=0.050 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHhhhhhhhhhcCCCCCcchhccchhHHhhh
Q psy3735 34 TTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSRQRSMPGELCVAWTHHLNAAFT 87 (91)
Q Consensus 34 ~~~t~~ql~~Le~~f~~~~~p~~~~r~~l~~a~~l~l~~~~v~vWFqnrR~k~~ 87 (91)
..+|+.+...|..... +. ...++ |..++++.+.|++--.|=+.|..
T Consensus 153 ~~Lt~rE~~vl~~l~~-g~-----s~~~I--a~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 153 NQLTPRERDILKLIAQ-GL-----PNKMI--ARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GGSCHHHHHHHHHHHT-TC-----CHHHH--HHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHc-CC-----CHHHH--HHHHCCCHHHHHHHHHHHHHHcC
Confidence 3588888888775543 22 35677 99999999999988777777753
Done!