RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3735
(91 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 48.7 bits (116), Expect = 6e-10
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 23 SLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
L R R+ R +T Q ELEK F Y R
Sbjct: 7 WLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRY 44
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 45.4 bits (107), Expect = 1e-08
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 30 RRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
R R T+ L +E F+ YPD R+
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKRE 31
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 43.8 bits (103), Expect = 3e-08
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 29 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQC 61
QRR RT FTS QL++LE F R YPD+ TR+
Sbjct: 1 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREE 33
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 42.8 bits (101), Expect = 6e-08
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 33 RTTFTSFQLEELEKAFSRTHYPDVFTRQC 61
R T+T +Q ELEK F Y R
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIE 29
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 42.9 bits (101), Expect = 8e-08
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 30 RRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
+R RT+FT Q+E LEK F RTHYPDVF R+
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARE 32
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 42.9 bits (101), Expect = 9e-08
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 28 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQC 61
K R RT QL L ++ PD ++
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQ 35
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 42.6 bits (100), Expect = 1e-07
Identities = 22/33 (66%), Positives = 29/33 (87%)
Query: 28 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
KQRR RTTF++ QL+ELE+AF RT YPD++TR+
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTRE 33
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 42.2 bits (99), Expect = 1e-07
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 31 RYRTTFTSFQLEELEKAFSRTHYPDVFTRQC 61
RYRT FT QL LEK F + +Y R
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCE 31
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 42.2 bits (99), Expect = 1e-07
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 30 RRYRTTFTSFQLEELEKAFSRTHYPDVFTRQC 61
R+ RT FT+ QL LE+ F + Y + R
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAE 32
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 42.3 bits (99), Expect = 2e-07
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 25 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQC 61
K+R+ R FT Q ELE+ F + Y R+
Sbjct: 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREH 41
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 41.8 bits (98), Expect = 2e-07
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 30 RRYRTTFTSFQLEELEKAFSRTHYPDVFTRQC 61
R+ R ++ QL ELE+ ++ + R+
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRK 33
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 41.0 bits (96), Expect = 4e-07
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 30 RRYRTTFTSFQLEELEKAFSRTHYPDVFTRQC 61
+ + F++ Q ELEK F Y R+
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKR 32
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 40.7 bits (95), Expect = 5e-07
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 30 RRYRTTFTSFQLEELEKAFSRTHYPDVFTRQC 61
RR RTTFTS Q+ ELE+ F + Y
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLAD 33
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 40.2 bits (94), Expect = 7e-07
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 31 RYRTTFTSFQLEELEKAFSRTHYPDVFTRQC 61
R RT F+S QL L++ F+ Y RQ
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQ 31
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 40.3 bits (94), Expect = 9e-07
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 29 QRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQC 61
+R+ R F+ Q+ ELE+ F + Y R+
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREH 34
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 39.1 bits (91), Expect = 2e-06
Identities = 7/28 (25%), Positives = 8/28 (28%)
Query: 33 RTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
R FT Q L F P +
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQI 29
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 38.8 bits (90), Expect = 4e-06
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 26 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
+ ++R RT+ + LE F + P +
Sbjct: 5 VQARKRKRTSIENRVRWSLETMFLKCPKPSLQQIT 39
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 38.8 bits (90), Expect = 5e-06
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 27 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQC 61
RT FT+ QL ELEK F Y R
Sbjct: 25 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVE 59
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 37.6 bits (87), Expect = 8e-06
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 33 RTTFTSFQLEELEKAFSRTHYPDVFTRQC 61
+++ + LE+ F R + ++
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEE 29
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 36.0 bits (83), Expect = 3e-05
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 31 RYRTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
+ RTT + + LE+ F P
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIM 30
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 35.7 bits (82), Expect = 5e-05
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 30 RRYRTTFTSFQLEELEKAFSRT-HYPDVFTRQ 60
T T Q+E LE F++ +PD T
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLC 33
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 35.9 bits (82), Expect = 7e-05
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 33 RTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
R + + L +A+ R P R+
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERE 28
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 31.1 bits (70), Expect = 0.003
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 14 SEGEMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSR----THYPDVFTRQ 60
S G S +R+RT FT+ Q E++ R D +
Sbjct: 2 SSGSSGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVE 52
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 29.9 bits (67), Expect = 0.009
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 33 RTTFTSFQLEELEKAFSRTHYPDVFTRQ 60
RT+ + LEK+F P
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDIT 29
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 29.5 bits (66), Expect = 0.012
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 30 RRYRTTFTSFQLEELEKAF---SRTHYPDVFTRQ 60
RR R F E L + F YP ++
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKE 35
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 29.3 bits (66), Expect = 0.015
Identities = 3/34 (8%), Positives = 8/34 (23%), Gaps = 3/34 (8%)
Query: 30 RRYRTTFTSFQLEELEKAFSRTH---YPDVFTRQ 60
+ R + + YP ++
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKK 36
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 29.3 bits (65), Expect = 0.020
Identities = 8/34 (23%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 28 KQRRYRTTFTSFQLEELEKAFSRT-HYPDVFTRQ 60
R RT + L L+ YPD
Sbjct: 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIH 39
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 27.8 bits (62), Expect = 0.052
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 37 TSFQLEELEKAFSR-THYPDVFTRQ 60
T+ LEK F+ T +PD +
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLE 25
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 26.3 bits (58), Expect = 0.16
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 31 RYRTTFTSFQLEELEKAFSR-THYPDVFTRQ 60
+ + LEK F T YPD +
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLK 33
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 25.9 bits (57), Expect = 0.23
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 3/28 (10%)
Query: 36 FTSFQLEELEKAFS---RTHYPDVFTRQ 60
FT + LE F+ Y D +
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLE 32
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 26.2 bits (57), Expect = 0.25
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 25 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQC 61
P++ + + T+ QL L+ +F +
Sbjct: 5 PQKFKEK-----TAEQLRVLQASFLNSSVLTDEELNR 36
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 23.2 bits (49), Expect = 3.5
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 33 RTTFTSFQLEELEKAFSRTHYPDVFTRQC 61
T QL L+ F + + Q
Sbjct: 7 GKRKTKEQLAILKSFFLQCQWARREDYQK 35
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 123
Score = 23.2 bits (50), Expect = 5.6
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 50 RTHYPDVFTRQCGRFSRQRSMPGELC 75
+P + G + +P ELC
Sbjct: 91 PLKFPQLHCLNVGSSIKSILLPIELC 116
>d1xqga_ e.1.1.1 (A:) Maspin {Human (Homo sapiens) [TaxId: 9606]}
Length = 378
Score = 22.9 bits (48), Expect = 8.8
Identities = 5/50 (10%), Positives = 18/50 (36%)
Query: 17 EMEDYASLPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTRQCGRFSR 66
+ + +++ K + F ++ + + + +F+ FS
Sbjct: 260 QWTNPSTMANAKVKLSIPKFKVEKMIDPKASLENLGLKHIFSEDTSDFSG 309
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.130 0.394
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 345,138
Number of extensions: 13812
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 35
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)