Query psy3738
Match_columns 136
No_of_seqs 111 out of 176
Neff 3.5
Searched_HMMs 46136
Date Sat Aug 17 00:15:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05602 CLPTM1: Cleft lip and 100.0 1.6E-55 3.4E-60 378.7 6.7 122 14-135 252-380 (438)
2 KOG2489|consensus 100.0 5.2E-51 1.1E-55 363.8 5.4 122 14-135 271-399 (592)
3 PF03083 MtN3_slv: Sugar efflu 78.0 3.7 8E-05 27.8 3.6 68 61-129 7-74 (87)
4 PF04193 PQ-loop: PQ loop repe 58.0 3.7 8.1E-05 26.0 0.2 28 81-108 26-53 (61)
5 PF08434 CLCA_N: Calcium-activ 58.0 9.1 0.0002 32.6 2.6 40 2-57 28-67 (262)
6 smart00571 DDT domain in diffe 40.6 43 0.00093 22.1 3.2 44 25-68 14-59 (63)
7 PF05325 DUF730: Protein of un 40.1 37 0.0008 26.0 3.2 40 9-48 29-82 (122)
8 PF03694 Erg28: Erg28 like pro 32.8 71 0.0015 23.9 3.7 53 51-104 5-59 (111)
9 PTZ00469 60S ribosomal subunit 30.8 41 0.00088 27.7 2.3 29 45-80 18-46 (187)
10 PHA02844 putative transmembran 29.5 1.2E+02 0.0026 21.8 4.2 35 39-73 24-70 (75)
11 smart00679 CTNS Repeated motif 28.5 41 0.00089 18.7 1.4 17 82-98 13-29 (32)
12 PF03706 UPF0104: Uncharacteri 27.6 1.3E+02 0.0029 23.4 4.6 39 36-74 11-49 (294)
13 PF05992 SbmA_BacA: SbmA/BacA- 27.1 1.1E+02 0.0024 26.9 4.5 54 37-91 50-111 (315)
14 PF12575 DUF3753: Protein of u 25.8 1.8E+02 0.0038 20.7 4.5 35 39-73 24-70 (72)
15 KOG1623|consensus 25.2 1.2E+02 0.0026 25.7 4.2 68 61-128 13-80 (243)
16 PTZ00195 60S ribosomal protein 24.6 61 0.0013 27.0 2.3 41 46-93 19-67 (198)
17 PF06540 GMAP: Galanin message 23.5 53 0.0011 22.9 1.4 12 62-73 25-36 (62)
18 TIGR03476 HpnL putative membra 22.6 1.6E+02 0.0035 24.0 4.4 36 37-73 23-58 (318)
19 KOG3015|consensus 22.5 1.9E+02 0.004 25.4 4.9 75 35-110 189-282 (283)
20 PHA02975 hypothetical protein; 21.0 2.2E+02 0.0048 20.2 4.2 35 39-73 24-66 (69)
No 1
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=100.00 E-value=1.6e-55 Score=378.70 Aligned_cols=122 Identities=44% Similarity=0.728 Sum_probs=117.5
Q ss_pred cccccccceeeehhcCC-------CCCCCCCChHHHHHHHhccChhHHHHHHHHHHHHHHHHHhhccchhhhhhcCCCcc
Q psy3738 14 SATAEATTTFLLSCLTP-------SCPFVFPDQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLE 86 (136)
Q Consensus 14 ~~~~~~~~~~~l~~~~~-------~~~f~~~d~DeiK~~~leTNpylL~~T~~VS~LHsvFefLAFKNDI~FWr~kksm~ 86 (136)
+..|.+.+++|+-+..+ +.|++++|+||+||||+|||||||++|++||+||+|||||||||||+|||+||||+
T Consensus 252 ~~~p~s~~k~~l~~~~~~~~~~~~~~g~~~~~~d~~K~~~~etn~~lL~~t~~vs~lH~~f~fLAFKnDi~fW~~~k~~~ 331 (438)
T PF05602_consen 252 SYSPISLWKWQLYAQMEQSFKQQQQMGFSEKDIDEIKRIFLETNPYLLALTFVVSLLHSVFDFLAFKNDISFWRKRKSME 331 (438)
T ss_pred EEEecchHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHhcCCHhhhHHHHHHHHHHHHHHHHhhhhHHHHHhccCCcc
Confidence 56789999999877544 88999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHhhhhhheeeeeeeCCCceEEeecchhhhhhhhhcccccc
Q psy3738 87 GLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKIG 135 (136)
Q Consensus 87 GLS~rtv~~n~f~q~IIfLYLlDn~TS~lIli~~gig~lIe~WKv~K~~ 135 (136)
|||+||+++|||||+||||||+||||||||++|+|+|++||+||++|++
T Consensus 332 GlS~rtv~~~~~~~~iIfLYL~D~~ts~lil~~~gig~~ie~WKv~K~~ 380 (438)
T PF05602_consen 332 GLSVRTVLWNCFSQIIIFLYLLDNETSWLILVPSGIGLLIEAWKVTKAL 380 (438)
T ss_pred cccHHHHHHHHHHHHheeeeEEeCCCcEEeehHhHhHHhHhheeeeEEE
Confidence 9999999999999999999999999999999999999999999999986
No 2
>KOG2489|consensus
Probab=100.00 E-value=5.2e-51 Score=363.79 Aligned_cols=122 Identities=50% Similarity=0.785 Sum_probs=113.9
Q ss_pred cccccccceeeehhcCC-------CCCCCCCChHHHHHHHhccChhHHHHHHHHHHHHHHHHHhhccchhhhhhcCCCcc
Q psy3738 14 SATAEATTTFLLSCLTP-------SCPFVFPDQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLE 86 (136)
Q Consensus 14 ~~~~~~~~~~~l~~~~~-------~~~f~~~d~DeiK~~~leTNpylL~~T~~VS~LHsvFefLAFKNDI~FWr~kksm~ 86 (136)
+..|.|.++++|--..+ ++|+.++|.||+|++|+|||||||++|++||++|+|||||||||||||||+||||+
T Consensus 271 ~y~P~sv~K~ql~~~~~~~~q~~~~~g~~~kd~DEvK~~fleTN~yLL~vT~fVS~lH~vFdfLAFKNDIqFWn~rKsme 350 (592)
T KOG2489|consen 271 TYYPLSVFKLQLYASQQMASQWLQSFGFMEKDSDEVKGAFLETNPYLLAVTIFVSILHSVFDFLAFKNDIQFWNKRKSME 350 (592)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHhcchHHHhccccccc
Confidence 35677777776644333 79999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHhhhhhheeeeeeeCCCceEEeecchhhhhhhhhcccccc
Q psy3738 87 GLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKIG 135 (136)
Q Consensus 87 GLS~rtv~~n~f~q~IIfLYLlDn~TS~lIli~~gig~lIe~WKv~K~~ 135 (136)
|||+||++||||||+||||||+|||||+||++|+|+|++||+||+.|++
T Consensus 351 GLS~rsvl~~~F~s~IIflYllDneTs~mVlvs~gvG~~IE~WKi~K~m 399 (592)
T KOG2489|consen 351 GLSVRSVLWRCFSSLIIFLYLLDNETSFMVLVSVGVGLLIELWKIKKAM 399 (592)
T ss_pred cccHHHHHHHHHHHHhhhheeecCCccEEEEEeccceeeeeeeecceEE
Confidence 9999999999999999999999999999999999999999999999985
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=78.01 E-value=3.7 Score=27.81 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhccchhhhhhcCCCcccchhhHHHHHhhhhhheeeeeeeCCCceEEeecchhhhhhhhh
Q psy3738 61 SILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELW 129 (136)
Q Consensus 61 S~LHsvFefLAFKNDI~FWr~kksm~GLS~rtv~~n~f~q~IIfLYLlDn~TS~lIli~~gig~lIe~W 129 (136)
+...++.-+++-=.++.-++++|+.+++|....+..++....=+.|=+=- .++.+.++.++|++..+.
T Consensus 7 ~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~-~d~~i~~~N~~g~~~~~~ 74 (87)
T PF03083_consen 7 ASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILI-NDWPIIVPNVFGLVLSII 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhc-CCeeEEeeHHHHHHHHHH
Confidence 34445556666667888888999999999999998888887777764321 246899999999988754
No 4
>PF04193 PQ-loop: PQ loop repeat
Probab=58.00 E-value=3.7 Score=26.00 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=23.7
Q ss_pred cCCCcccchhhHHHHHhhhhhheeeeee
Q psy3738 81 NRQSLEGLSVRSVFFNVFQSVVVLLYVL 108 (136)
Q Consensus 81 ~kksm~GLS~rtv~~n~f~q~IIfLYLl 108 (136)
++|+.+|+|.-+.+.+....++-++|.+
T Consensus 26 k~ks~~glS~~~~~l~~~g~~~~~~~~~ 53 (61)
T PF04193_consen 26 KRKSTGGLSLWFLLLWLIGSILWVLYSI 53 (61)
T ss_pred HccccccccHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999888877765
No 5
>PF08434 CLCA_N: Calcium-activated chloride channel; InterPro: IPR013642 The CLCA family of calcium-activated chloride channels has been identified in many epithelial and endothelial cell types as well as in smooth muscle cells [] and has four or five putative transmembrane regions. Additionally to their role as chloride channels some CLCA proteins function as adhesion molecules and may also have roles as tumour suppressors []. The domain described here is found at the N terminus of CLCAs.
Probab=57.97 E-value=9.1 Score=32.65 Aligned_cols=40 Identities=33% Similarity=0.469 Sum_probs=31.3
Q ss_pred CccceeEEEEEecccccccceeeehhcCCCCCCCCCChHHHHHHHhccChhHHHHH
Q psy3738 2 NNKWKNVLFVISSATAEATTTFLLSCLTPSCPFVFPDQDSLKEALLETSPYLLAAT 57 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~d~DeiK~~~leTNpylL~~T 57 (136)
||...||+..|+-.-|| +++-+|.||.|+.|...||.-.|
T Consensus 28 nnGYe~vvIAI~p~VpE----------------d~~lI~~Ik~m~t~AS~~Lf~AT 67 (262)
T PF08434_consen 28 NNGYEDVVIAINPSVPE----------------DEKLIDNIKDMFTEASQYLFNAT 67 (262)
T ss_pred CCCcccEEEEECCCCCc----------------cHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888888888765544 45679999999999999886543
No 6
>smart00571 DDT domain in different transcription and chromosome remodeling factors.
Probab=40.56 E-value=43 Score=22.13 Aligned_cols=44 Identities=16% Similarity=0.093 Sum_probs=36.5
Q ss_pred ehhcCCCCCCCCCC--hHHHHHHHhccChhHHHHHHHHHHHHHHHH
Q psy3738 25 LSCLTPSCPFVFPD--QDSLKEALLETSPYLLAATVIVSILHSVFE 68 (136)
Q Consensus 25 l~~~~~~~~f~~~d--~DeiK~~~leTNpylL~~T~~VS~LHsvFe 68 (136)
|+.+++..+.++-. .|++-+.+..+.|.-+..=+.+++|..+++
T Consensus 14 l~~F~~~L~L~~f~~~l~~f~~Al~~~~~~~ll~ei~~~LL~~i~~ 59 (63)
T smart00571 14 LRSFGKVLGLSPFRATLEDFIAALKCRDQNGLLTEVHVVLLRAILK 59 (63)
T ss_pred HHHHHHHhCCCcchhhHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence 46677777777777 999999999999998888888888888765
No 7
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=40.10 E-value=37 Score=26.02 Aligned_cols=40 Identities=25% Similarity=0.440 Sum_probs=30.4
Q ss_pred EEEEecccccccceeeehhc-------CCCCCCC-------CCChHHHHHHHhc
Q psy3738 9 LFVISSATAEATTTFLLSCL-------TPSCPFV-------FPDQDSLKEALLE 48 (136)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~~-------~~~~~f~-------~~d~DeiK~~~le 48 (136)
..|-.|-.|+.+|++-.+|- ++..||. -.|.|+||+--.|
T Consensus 29 vvvats~dpvts~klyfscpyeisdg~g~~~gfkrwwtvalcdefdmikee~~e 82 (122)
T PF05325_consen 29 VVVATSRDPVTSGKLYFSCPYEISDGPGRGCGFKRWWTVALCDEFDMIKEETIE 82 (122)
T ss_pred EEEEeccCCcccceeeecCccccccCCCCCccceeEEeeeechhhhHHHHHHHH
Confidence 45778999999999999994 4566665 3678888875544
No 8
>PF03694 Erg28: Erg28 like protein; InterPro: IPR005352 This is a family of integral membrane proteins, which may contain four transmembrane helices. Members of this family are thought to be involved in sterol C-4 demethylation. In Saccharomyces cerevisiae (Baker's yeast) they may tether Erg26p (sterol dehydrogenase/decarboxylase) and Erg27p (3-ketoreductase) to the endoplasmic reticulum or may facilitate interaction between these proteins []. The family contains a conserved arginine and histidine that may be functionally important.; GO: 0016021 integral to membrane
Probab=32.77 E-value=71 Score=23.89 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhh--ccchhhhhhcCCCcccchhhHHHHHhhhhhhee
Q psy3738 51 PYLLAATVIVSILHSVFELLA--FKNDIQFWNNRQSLEGLSVRSVFFNVFQSVVVL 104 (136)
Q Consensus 51 pylL~~T~~VS~LHsvFefLA--FKNDI~FWr~kksm~GLS~rtv~~n~f~q~IIf 104 (136)
||-|.+..++++.+++.-|.. ++ ...|=++.+.+.+++.|+--.=.+...+|-
T Consensus 5 p~WLlfVs~~~~~ns~q~y~~~~~~-~~vY~~~~~~vt~L~aRtFG~WTl~s~~ir 59 (111)
T PF03694_consen 5 PYWLLFVSVVSLFNSLQCYFSLSLT-RRVYSGKPKQVTPLSARTFGTWTLLSAIIR 59 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHH-hhccCCCCCCCCchhhhhhHHHHHHHHHHH
Confidence 677888888888888877655 22 234446668899999998754444444444
No 9
>PTZ00469 60S ribosomal subunit protein L18; Provisional
Probab=30.78 E-value=41 Score=27.70 Aligned_cols=29 Identities=28% Similarity=0.584 Sum_probs=23.7
Q ss_pred HHhccChhHHHHHHHHHHHHHHHHHhhccchhhhhh
Q psy3738 45 ALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWN 80 (136)
Q Consensus 45 ~~leTNpylL~~T~~VS~LHsvFefLAFKNDI~FWr 80 (136)
..-.|||||- .|.-...|+|-+||-.||+
T Consensus 18 ~~~stN~yL~-------~Lik~yk~larrt~a~fwk 46 (187)
T PTZ00469 18 NLVSKNPYLR-------LLVKLYRFLARRTNANFNK 46 (187)
T ss_pred CCCCCCHHHH-------HHHHHHHHHHHhhCChHHH
Confidence 3457899985 4567789999999999996
No 10
>PHA02844 putative transmembrane protein; Provisional
Probab=29.48 E-value=1.2e+02 Score=21.79 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=25.5
Q ss_pred hHHHHHHHhcc------------ChhHHHHHHHHHHHHHHHHHhhcc
Q psy3738 39 QDSLKEALLET------------SPYLLAATVIVSILHSVFELLAFK 73 (136)
Q Consensus 39 ~DeiK~~~leT------------NpylL~~T~~VS~LHsvFefLAFK 73 (136)
+|-+|..+.|. +.+.+.++++..++-.+|-|+-+|
T Consensus 24 I~vVksVLtd~~~s~~~~~~~~~~~~~~ii~i~~v~~~~~~~flYLK 70 (75)
T PHA02844 24 IDVVKSVLSDDYDGVNKNNVCSSSTKIWILTIIFVVFATFLTFLYLK 70 (75)
T ss_pred HHHHHHHHcCCCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66789999985 345666777777777778887766
No 11
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=28.51 E-value=41 Score=18.66 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=13.7
Q ss_pred CCCcccchhhHHHHHhh
Q psy3738 82 RQSLEGLSVRSVFFNVF 98 (136)
Q Consensus 82 kksm~GLS~rtv~~n~f 98 (136)
+|+.+|+|.-.++.++.
T Consensus 13 ~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 13 RKSTEGLSILFVLLWLL 29 (32)
T ss_pred cCCcCcCCHHHHHHHHh
Confidence 57999999988877654
No 12
>PF03706 UPF0104: Uncharacterised protein family (UPF0104); InterPro: IPR022791 This family of proteins are integral membrane proteins. These proteins are uncharacterised but contain a conserved PG motif. Some members of this family are annotated as dolichol-P-glucose synthetase and contain a PF00535 from PFAM domain. This entry also contains proteins of unknown function that are involved in the addition of lysine to phosphatidylglycerol (lysylphosphatidylglycerol synthetase, L-PG synthase). L-PG synthase produces lysyl-phosphatidylglycerol (L-PG), the major component of the bacterial membrane and responsible for its positive charge. L-PG synthesis contributes to bacterial virulence as it is involved in the cationic antimicrobial peptides (CAMP) resistance mechanism of the host's immune system (defensins, cathelicidins) and of the competing microorganisms (bacteriocins).
Probab=27.58 E-value=1.3e+02 Score=23.40 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=31.1
Q ss_pred CCChHHHHHHHhccChhHHHHHHHHHHHHHHHHHhhccc
Q psy3738 36 FPDQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKN 74 (136)
Q Consensus 36 ~~d~DeiK~~~leTNpylL~~T~~VS~LHsvFefLAFKN 74 (136)
..|.+|+.+.+.+.||+.+.+..+++++=.+++.+..+-
T Consensus 11 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 49 (294)
T PF03706_consen 11 KIDLKELWDALRSANPWWLLLALLLSLLSYVLRALRWRL 49 (294)
T ss_pred hCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999888887777766666665544
No 13
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=27.11 E-value=1.1e+02 Score=26.94 Aligned_cols=54 Identities=22% Similarity=0.416 Sum_probs=36.9
Q ss_pred CChHHHHHHHhccChhHHHHHHHHHHH------HHHHHH-hhccchh-hhhhcCCCcccchhh
Q psy3738 37 PDQDSLKEALLETSPYLLAATVIVSIL------HSVFEL-LAFKNDI-QFWNNRQSLEGLSVR 91 (136)
Q Consensus 37 ~d~DeiK~~~leTNpylL~~T~~VS~L------HsvFef-LAFKNDI-~FWr~kksm~GLS~r 91 (136)
-+.+|+-.-+. +-+++.+..++++.+ |-+|-+ -|--++- ++|++.++.||-|-|
T Consensus 50 ~t~~ef~~~~~-~f~~ia~~~v~~~v~~~ff~shyiFrWR~Am~~yY~~~W~~~r~IEGASQR 111 (315)
T PF05992_consen 50 VTIDEFYAQIL-NFLWIAMIYVVLAVLNSFFVSHYIFRWRTAMNEYYMSHWPKLRHIEGASQR 111 (315)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccHHHH
Confidence 36777765543 355555555555544 677766 5555554 999999999999987
No 14
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=25.83 E-value=1.8e+02 Score=20.73 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=23.4
Q ss_pred hHHHHHHHhccCh------------hHHHHHHHHHHHHHHHHHhhcc
Q psy3738 39 QDSLKEALLETSP------------YLLAATVIVSILHSVFELLAFK 73 (136)
Q Consensus 39 ~DeiK~~~leTNp------------ylL~~T~~VS~LHsvFefLAFK 73 (136)
+|.+|.++.|.++ |.+.++++..++-.++-|+-+|
T Consensus 24 i~vVksVltdk~~~~~~~~~~~~~~~~~ii~ii~v~ii~~l~flYLK 70 (72)
T PF12575_consen 24 INVVKSVLTDKKKLKNNKNNKNFNWIILIISIIFVLIIVLLTFLYLK 70 (72)
T ss_pred HHHHHHHHcCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778999888553 4666666666666666666554
No 15
>KOG1623|consensus
Probab=25.22 E-value=1.2e+02 Score=25.68 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhccchhhhhhcCCCcccchhhHHHHHhhhhhheeeeeeeCCCceEEeecchhhhhhhh
Q psy3738 61 SILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIEL 128 (136)
Q Consensus 61 S~LHsvFefLAFKNDI~FWr~kksm~GLS~rtv~~n~f~q~IIfLYLlDn~TS~lIli~~gig~lIe~ 128 (136)
+..-+++-|++=.-..--|+||||-||.|.-==+...+++..=.-|=+=-++++++..-.|+|+.+|.
T Consensus 13 ~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~ 80 (243)
T KOG1623|consen 13 GNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIET 80 (243)
T ss_pred HHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHH
Confidence 34445566676556667788999999998766666666655555554211227888888999999985
No 16
>PTZ00195 60S ribosomal protein L18; Provisional
Probab=24.63 E-value=61 Score=26.97 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=29.9
Q ss_pred HhccChhHHHHHHHHHHHHHHHHHhhccchhhhhhc--------CCCcccchhhHH
Q psy3738 46 LLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNN--------RQSLEGLSVRSV 93 (136)
Q Consensus 46 ~leTNpylL~~T~~VS~LHsvFefLAFKNDI~FWr~--------kksm~GLS~rtv 93 (136)
--.|||||- .|.-+..|||=++|-.||+. +.+-+=+|+.-+
T Consensus 19 pkstN~yL~-------lLVklyrflaRrt~a~fnk~VakRL~~sr~nRppVsLSrI 67 (198)
T PTZ00195 19 TYSTNPYIK-------LLIKLYKFLAKRTSSGFNKVVYQRLIKSRSNRAPISLSRI 67 (198)
T ss_pred CCCCCHHHH-------HHHHHHHHHHHhhCCHHHHHHHHHHhcccccCCceeHHHH
Confidence 346899985 45667889999999999973 556566665444
No 17
>PF06540 GMAP: Galanin message associated peptide (GMAP); InterPro: IPR013068 Galanin is a peptide hormone that controls various biological activities []. Galanin-like immuno-reactivity has been found in the central and peripheral nervous systems of mammals, with high concentrations demonstrated in discrete regions of the central nervous system, including the median eminence, hypothalamus, arcuate nucleus, septum, neuro-intermediate lobe of the pituitary, and the spinal cord. Its localisation within neurosecretory granules suggests that galanin may function as a neurotransmitter, and it has been shown to coexist with a variety of other peptide and amine neurotransmitters within individual neurons []. Although the precise physiological role of galanin is uncertain, it has a number of pharmacological properties: it stimulates food intake, when injected into the third ventricle of rats; it increases levels of plasma growth hormone and prolactin, and decreases dopamine levels in the median eminence []; and infusion into humans results in hyperglycemia and glucose intolerance, and inhibits pancreatic release of insulin, somatostatin and pancreatic peptide. Galanin also modulates smooth muscle contractility within the gastro-intestinal and genito-urinary tracts, all such activities suggesting that the hormone may play an important role in the nervous modulation of endocrine and smooth muscle function []. This domain represents the galanin message-associated peptide (GMAP) domain which is found C-terminal to the galanin domain in the preprogalanin precursor protein. GMAP sequences in different species show a high degree of homology, but the biological function of the GMAP peptide is not known [].
Probab=23.48 E-value=53 Score=22.86 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=9.1
Q ss_pred HHHHHHHHhhcc
Q psy3738 62 ILHSVFELLAFK 73 (136)
Q Consensus 62 ~LHsvFefLAFK 73 (136)
++|+|.|||.|=
T Consensus 25 ivrTiiEFLtfL 36 (62)
T PF06540_consen 25 IVRTIIEFLTFL 36 (62)
T ss_pred HHHHHHHHHHHH
Confidence 578888888773
No 18
>TIGR03476 HpnL putative membrane protein. This family of hydrophobic proteins is observed in two distinct contexts. It is primarily found in the presence of genes for the biosynthesis and elaboration of hopene where we assign the gene symbol HpnL. In a subset of the genomes containing HpnL a second, often plasmid-encoded, homolog is observed in a context implying the biosynthesis of 2-aminoethylphosphonate head-group containing lipids.
Probab=22.59 E-value=1.6e+02 Score=24.04 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=29.8
Q ss_pred CChHHHHHHHhccChhHHHHHHHHHHHHHHHHHhhcc
Q psy3738 37 PDQDSLKEALLETSPYLLAATVIVSILHSVFELLAFK 73 (136)
Q Consensus 37 ~d~DeiK~~~leTNpylL~~T~~VS~LHsvFefLAFK 73 (136)
.|.+++.+.+.+.||. +++.+++.++--+++.+..|
T Consensus 23 ~~~~~~~~~l~~~~~~-l~~a~~l~~~~~~l~a~rw~ 58 (318)
T TIGR03476 23 EGFHDVAAALASAGWG-LLLLAAFHLLPLLLDALAWY 58 (318)
T ss_pred CCHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999 99999999887777665444
No 19
>KOG3015|consensus
Probab=22.49 E-value=1.9e+02 Score=25.43 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=59.2
Q ss_pred CCCChHHHHHHHhccChhHHH-HHHHHHHHHHH-HHHhhccc-----------------hhhhhhcCCCcccchhhHHHH
Q psy3738 35 VFPDQDSLKEALLETSPYLLA-ATVIVSILHSV-FELLAFKN-----------------DIQFWNNRQSLEGLSVRSVFF 95 (136)
Q Consensus 35 ~~~d~DeiK~~~leTNpylL~-~T~~VS~LHsv-FefLAFKN-----------------DI~FWr~kksm~GLS~rtv~~ 95 (136)
+|++-+.+++-+...|+|=|+ +-+.|+-+||. ..+.++++ -++.|.+-+.-.+++.+-+-.
T Consensus 189 ~e~~ke~i~~~l~s~n~w~Lagle~~v~s~KSfVia~~ii~~~l~~d~Av~larLEe~yQvekWG~VEwaHdi~~~eL~~ 268 (283)
T KOG3015|consen 189 AEKDKEAIDKWLSSLNFWALAGLEFAVASLKSFVIALGIIEGKLDVDKAVALARLEEEYQVEKWGNVEWAHDIEKQELRA 268 (283)
T ss_pred cHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 378888899999999999775 56778888875 67777777 467999999999999888877
Q ss_pred HhhhhhheeeeeeeC
Q psy3738 96 NVFQSVVVLLYVLDN 110 (136)
Q Consensus 96 n~f~q~IIfLYLlDn 110 (136)
+. +...+|.|+-++
T Consensus 269 r~-~aa~lf~~l~~~ 282 (283)
T KOG3015|consen 269 RL-SAATLFVHLNSE 282 (283)
T ss_pred HH-HHHHHHHHHhcC
Confidence 66 446677777665
No 20
>PHA02975 hypothetical protein; Provisional
Probab=21.01 E-value=2.2e+02 Score=20.16 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=25.0
Q ss_pred hHHHHHHHhcc--------ChhHHHHHHHHHHHHHHHHHhhcc
Q psy3738 39 QDSLKEALLET--------SPYLLAATVIVSILHSVFELLAFK 73 (136)
Q Consensus 39 ~DeiK~~~leT--------NpylL~~T~~VS~LHsvFefLAFK 73 (136)
+|-+|..+.|. +.+.+.++++..++-.+|-|+-+|
T Consensus 24 I~vVksVLtdk~~~~~~~~~~~~~ii~i~~v~~~~~~~flYLK 66 (69)
T PHA02975 24 IDTIMHVLTGKKEPKKKSSLSIILIIFIIFITCIAVFTFLYLK 66 (69)
T ss_pred HHHHHHHHcCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888884 345667777777777777777665
Done!