BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy375
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XRI|A Chain A, Crystal Structure Of Human Eri1 Exoribonuclease 3
Length = 224
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 34 LHPELTMPMFSEITHRFQT---ARPEVRQILLQYLLPWLHNMELLDPNV 79
+HP+LT P +E+T Q +P ++Q+L + + W+ LLDPNV
Sbjct: 79 VHPQLT-PFCTELTGIIQAMVDGQPSLQQVL-ERVDEWMAKEGLLDPNV 125
>pdb|1R70|B Chain B, Model Of Human Iga2 Determined By Solution Scattering,
Curve Fitting And Homology Modelling
pdb|1R70|D Chain D, Model Of Human Iga2 Determined By Solution Scattering,
Curve Fitting And Homology Modelling
pdb|3CM9|A Chain A, Solution Structure Of Human Siga2
pdb|3CM9|B Chain B, Solution Structure Of Human Siga2
pdb|3CM9|C Chain C, Solution Structure Of Human Siga2
pdb|3CM9|D Chain D, Solution Structure Of Human Siga2
Length = 462
Score = 28.5 bits (62), Expect = 0.88, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 18/56 (32%)
Query: 35 HPELTMPMFSEITHRFQTARPEVRQILLQYLLPWLHNMELLDPNVPPANPLSYYQL 90
HPEL P+ + IT T RPEV +LLP PP+ L+ +L
Sbjct: 317 HPELKTPLTANITKSGNTFRPEV------HLLP------------PPSEELALNEL 354
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 26 HLSEQLAQLHPELTMPMFSEITH--RFQTARPEVRQILLQYLLPWLHNMEL 74
H+ E Q P F+ + H + TA PEV++ LL W+ ++
Sbjct: 272 HIREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDI 322
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 26 HLSEQLAQLHPELTMPMFSEITH--RFQTARPEVRQILLQYLLPWLHNMEL 74
H+ E Q P F+ + H + TA PEV++ LL W+ ++
Sbjct: 272 HIREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDI 322
>pdb|2YJK|A Chain A, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|B Chain B, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|C Chain C, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|D Chain D, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|E Chain E, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|F Chain F, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|G Chain G, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|H Chain H, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|I Chain I, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|J Chain J, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|K Chain K, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|L Chain L, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJJ|A Chain A, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|B Chain B, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|C Chain C, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|D Chain D, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|E Chain E, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|F Chain F, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|G Chain G, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|H Chain H, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|I Chain I, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|J Chain J, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|K Chain K, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|L Chain L, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
Length = 161
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 52 TARPEVRQILLQYLLPWLHNMELL 75
TA PEV Q+L P +H M+ L
Sbjct: 12 TADPEVAAAAAQFLTPVVHKMQAL 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,558,492
Number of Sequences: 62578
Number of extensions: 80782
Number of successful extensions: 229
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 8
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)