BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy375
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VT28|FRY_DROME Protein furry OS=Drosophila melanogaster GN=fry PE=1 SV=2
Length = 3479
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 61/73 (83%)
Query: 15 LLSNTYCRSQMHLSEQLAQLHPELTMPMFSEITHRFQTARPEVRQILLQYLLPWLHNMEL 74
LLS+ YCRSQ LS+QLAQL PELTM +FSEITHRFQ+AR +VR +LLQ LLPWL NMEL
Sbjct: 1634 LLSSAYCRSQRFLSKQLAQLRPELTMSIFSEITHRFQSAREDVRALLLQCLLPWLQNMEL 1693
Query: 75 LDPNVPPANPLSY 87
+ +VPPA PLSY
Sbjct: 1694 VATSVPPATPLSY 1706
>sp|Q5TBA9|FRY_HUMAN Protein furry homolog OS=Homo sapiens GN=FRY PE=1 SV=1
Length = 3013
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 5/70 (7%)
Query: 20 YCRSQMHLSEQLAQLHPELTMPMFSEITHRFQTARPEVRQILLQYLLPWLHNMELLD--- 76
Y S LS +LA+++PELT+P+FSE++ RF T P RQI+L YLLPWLHN+EL+D
Sbjct: 1315 YSVSLALLSCELARMYPELTLPLFSEVSQRFPTTHPNGRQIMLTYLLPWLHNIELVDSRL 1374
Query: 77 --PNVPPANP 84
P P++P
Sbjct: 1375 LLPGSSPSSP 1384
>sp|E9Q8I9|FRY_MOUSE Protein furry homolog OS=Mus musculus GN=Fry PE=1 SV=1
Length = 3020
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 5/70 (7%)
Query: 20 YCRSQMHLSEQLAQLHPELTMPMFSEITHRFQTARPEVRQILLQYLLPWLHNMELLD--- 76
Y S LS +LA+++PELT+P+FSE++ RF T P RQI+L YLLPWLHN+EL+D
Sbjct: 1315 YSVSLALLSCELARMYPELTLPLFSEVSQRFPTTHPNGRQIMLTYLLPWLHNIELVDSRL 1374
Query: 77 --PNVPPANP 84
P P++P
Sbjct: 1375 LLPGSSPSSP 1384
>sp|O94915|FRYL_HUMAN Protein furry homolog-like OS=Homo sapiens GN=FRYL PE=1 SV=2
Length = 3013
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 44/57 (77%)
Query: 20 YCRSQMHLSEQLAQLHPELTMPMFSEITHRFQTARPEVRQILLQYLLPWLHNMELLD 76
Y S LSE+LA+ +PELT+ +FSEI+ R QTA P RQ++L YLLPW++N+EL+D
Sbjct: 1264 YSVSYYQLSEELARAYPELTLAIFSEISQRIQTAHPAGRQVMLHYLLPWMNNIELVD 1320
>sp|P97526|NF1_RAT Neurofibromin OS=Rattus norvegicus GN=Nf1 PE=1 SV=1
Length = 2820
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 25 MHLSEQLAQLHPELTMPMFSEITHRFQTARPEVRQILLQYLLPWLHNM 72
+ +S+ LA P LT+ E F + E++ + L+Y+ PWL N+
Sbjct: 1890 VSISKTLAANEPHLTLEFLEECISGFSKSSIELKHLCLEYMTPWLSNL 1937
>sp|P21359|NF1_HUMAN Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2
Length = 2839
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 25 MHLSEQLAQLHPELTMPMFSEITHRFQTARPEVRQILLQYLLPWLHNM 72
+ +S+ LA P LT+ E F + E++ + L+Y+ PWL N+
Sbjct: 1909 VSISKTLAANEPHLTLEFLEECISGFSKSSIELKHLCLEYMTPWLSNL 1956
>sp|Q04690|NF1_MOUSE Neurofibromin OS=Mus musculus GN=Nf1 PE=1 SV=1
Length = 2841
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 25 MHLSEQLAQLHPELTMPMFSEITHRFQTARPEVRQILLQYLLPWLHNM 72
+ +S+ LA P LT+ E F + E++ + L+Y+ PWL N+
Sbjct: 1911 VSISKTLAANEPHLTLEFLEECISGFSKSSIELKHLCLEYMTPWLSNL 1958
>sp|Q9HDV6|MOR2_SCHPO Cell polarity protein mor2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mor2 PE=4 SV=1
Length = 2196
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 20 YCRSQMHLSEQLAQLHPELTMPMFSEITHRFQTARPEVRQILLQYLLPWLHNMEL 74
Y + Q S QLA E + + SE F R+ L+ LLPWL N+EL
Sbjct: 1260 YLKPQYLFSVQLASDFTEDSFTLTSECLRYFNYGHQH-RRGLVTVLLPWLQNLEL 1313
>sp|B3CUJ5|TILS_ORITI tRNA(Ile)-lysidine synthase OS=Orientia tsutsugamushi (strain
Ikeda) GN=tilS PE=3 SV=1
Length = 441
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 6 STERNVDAALLSNTYCRSQMHLSEQLAQLHPELTMPM----------FSEITHR-FQTAR 54
S + N LL SQMHL++ L ++ E+ + F+ I + F+ A
Sbjct: 208 SFQHNFTVELLKKRIMLSQMHLTQALESVNNEIIHYVVHVVKIYSAGFAVIDRKLFKKAS 267
Query: 55 PEVRQILLQYLL 66
PE R +L YLL
Sbjct: 268 PEARYAILSYLL 279
>sp|Q48AS5|RECF_COLP3 DNA replication and repair protein RecF OS=Colwellia
psychrerythraea (strain 34H / ATCC BAA-681) GN=recF PE=3
SV=1
Length = 377
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 26 HLSEQLAQLHPELTMPMFSEITHRFQTARPEVR-QILLQYLLPWLHNMELLD 76
LSEQ+A++ + + SE+ + + P + ++ +QYL W L+D
Sbjct: 181 QLSEQVAEVRSQYITNLISELPYWLEILLPNIADKVTVQYLQGWPQKKNLMD 232
>sp|O43414|ERI3_HUMAN ERI1 exoribonuclease 3 OS=Homo sapiens GN=ERI3 PE=1 SV=2
Length = 337
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 34 LHPELTMPMFSEITHRFQT---ARPEVRQILLQYLLPWLHNMELLDPNV 79
+HP+LT P +E+T Q +P ++Q+L + + W+ LLDPNV
Sbjct: 192 VHPQLT-PFCTELTGIIQAMVDGQPSLQQVL-ERVDEWMAKEGLLDPNV 238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,790,795
Number of Sequences: 539616
Number of extensions: 1074903
Number of successful extensions: 3300
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3289
Number of HSP's gapped (non-prelim): 18
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)