RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy375
(93 letters)
>gnl|CDD|222610 pfam14228, MOR2-PAG1_mid, Cell morphogenesis central region. This
family is the conserved central region of proteins that
are involved in cell morphogenesis.
Length = 1120
Score = 33.0 bits (75), Expect = 0.012
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 16 LSNTYCRSQMHLSEQLAQLHPELTMPMFSEITHRFQTARPEVRQ-ILLQYLLPWLHNMEL 74
L ++Y + Q LS +LA+ HPEL+ + EI R A + Q +L + PW+ N+
Sbjct: 594 LPDSYQQFQYKLSAKLAKDHPELSEALCEEIMQRQLDAVDIIAQHQVLTCMAPWIENLNF 653
>gnl|CDD|219446 pfam07519, Tannase, Tannase and feruloyl esterase. This family
includes fungal tannase and feruloyl esterase. It also
includes several bacterial homologues of unknown
function.
Length = 451
Score = 27.8 bits (62), Expect = 0.68
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 66 LPWLHNMELLDPNVPPANPLSYYQ 89
L H DP+V PA+ + YY+
Sbjct: 332 LILYHGTA--DPSVSPASTIRYYE 353
>gnl|CDD|153116 cd01058, AAMH_B, Aromatic and Alkene Monooxygenase Hydroxylase,
subunit B, ferritin-like diiron-binding domain.
Aromatic and Alkene Monooxygenase Hydroxylases, subunit
B (AAMH_B). Subunit B (beta) of the soluble hydroxylase
of multicomponent, aromatic and alkene monooxygenases
are members of a superfamily of ferritin-like
iron-storage proteins. AAMH exists as a hexamer (an
alpha2-beta2-gamma2 homodimer) with each alpha-subunit
housing one nonheme diiron center embedded in a
four-helix bundle. The N-terminal domain of the alpha-
and noncatalytic beta-subunits possess nearly identical
folds; the beta-subunit lacks the C-terminal domain
found in the alpha-subunit. Methane monooxygenase is a
multicomponent enzyme found in methanotrophic bacteria
that catalyzes the hydroxylation of methane and higher
alkenes (as large as octane). Phenol monooxygenase,
found in a diverse group of bacteria, catalyses the
hydroxylation of phenol, chloro- and methyl-phenol and
naphthol. Both enzyme systems consist of three
components: the hydroxylase, a coupling protein and a
reductase. In the MMO hydroxylase, dioxygen and
substrate interact with the diiron center in a
hydrophobic cavity at the active site. The reductase
component and protein coupling factor provide electrons
from NADH for reducing the oxidized binuclear iron-oxo
cluster to its reduced form. Reaction with dioxygen
produces a peroxy-bridged complex and dehydration leads
to the formation of complex Q, which is thought to be
the oxygenating species that carries out the insertion
of an oxygen atom into a C-H bond of the substrate. The
toluene monooxygenase systems, toluene 2-, 3-, and
4-monooxygenase, are similar to MMO but with an
additional component, a Rieske-type ferredoxin. The
alkene monooxygenase from Xanthobacter strain Py2 is
closely related to aromatic monooxygenases and catalyzes
aromatic monohydroxylation of benzene, toluene, and
phenol. Alkane omega-hydroxylase (AlkB) and xylene
monooxygenase are members of a distinct class of
integral membrane diiron proteins and are not included
in this CD.
Length = 304
Score = 26.8 bits (60), Expect = 1.7
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 48 HRFQTARPEVRQILLQYLLPWLHN 71
+ PE R+ L +YL P H
Sbjct: 88 GLAEALSPEWREFLARYLGPLRHV 111
>gnl|CDD|216821 pfam01975, SurE, Survival protein SurE. E. coli cells with the
surE gene disrupted are found to survive poorly in
stationary phase. It is suggested that SurE may be
involved in stress response. Yeast also contains a
member of the family, probable tubulin-tyrosine ligase
PBY1. Yarrowia lipolytica PHO2 can complement a mutation
in acid phosphatase, suggesting that members of this
family could be phosphatases.
Length = 188
Score = 26.3 bits (59), Expect = 2.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 40 MPMFSEITHRFQTARPEVRQILLQYLLPWLHNMELLDPNVPPANP 84
+ SE F+TA VR+++ + L L LL+ N+P P
Sbjct: 125 LAGNSEEKDDFETAAKLVRRLVEKLLKNGLPPGTLLNVNIPDLPP 169
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 25.7 bits (56), Expect = 3.7
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 25 MHLSEQLAQLHPELTMPMFSEITHRFQTARPEVRQILLQYLLPWLHNMELLD 76
LS L + H L E+ + RPE +L L + H++E+LD
Sbjct: 174 KELSAALLESHENL-----KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLD 220
>gnl|CDD|221013 pfam11170, DUF2957, Protein of unknown function (DUF2957). Some
members annotate the proteins to be putative
lipoproteins however this cannot be confirmed. Currently
no function is known for this family of proteins.
Length = 361
Score = 25.5 bits (56), Expect = 4.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 73 ELLDPNVPPANPLSYYQLNF 92
LLDP P A+ + L+F
Sbjct: 294 TLLDPFAPHASLAGAFNLDF 313
>gnl|CDD|236969 PRK11753, PRK11753, DNA-binding transcriptional dual regulator Crp;
Provisional.
Length = 211
Score = 25.3 bits (56), Expect = 4.9
Identities = 9/26 (34%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 30 QLAQLHPELTMPMFSEITHRFQ-TAR 54
QL Q++P++ M + +++ R Q T+R
Sbjct: 106 QLIQVNPDILMALSAQMARRLQNTSR 131
>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter
(EST) Family.
Length = 1145
Score = 25.2 bits (55), Expect = 6.2
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 11/43 (25%)
Query: 54 RPEVRQILLQYLLPWLHNMELLDP---NVPPANPLSYYQLNFL 93
P + WLH+ DP +P A PL Y Q F
Sbjct: 882 YPHPPE--------WLHDKNDYDPENLRIPAAEPLEYAQFPFY 916
>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel
transmembrane region. This family includes the four
transmembrane helices that form the ion channel.
Length = 228
Score = 24.9 bits (55), Expect = 7.0
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 44 SEITHRFQTARPEVRQILLQYLLPWLHNMELLDPNVPPANP 84
S TH VR++ L+ L L + PPA P
Sbjct: 86 SPSTH---KMPEWVRKLFLRKLPRLLFMKRPPESLSPPAAP 123
>gnl|CDD|227411 COG5079, SAC3, Nuclear protein export factor [Intracellular
trafficking and secretion / Cell division and chromosome
partitioning].
Length = 646
Score = 24.9 bits (54), Expect = 9.1
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 54 RPEVRQILLQYLLPWLHNMELLDPNVPPANPLSYYQLNFL 93
R VR L ++L W + N P NP +
Sbjct: 461 RSMVRNNLRRFLTGWKDEAAKRNKNAPVTNPYLLLVVLDR 500
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.134 0.408
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,722,544
Number of extensions: 376093
Number of successful extensions: 547
Number of sequences better than 10.0: 1
Number of HSP's gapped: 547
Number of HSP's successfully gapped: 23
Length of query: 93
Length of database: 10,937,602
Length adjustment: 60
Effective length of query: 33
Effective length of database: 8,276,362
Effective search space: 273119946
Effective search space used: 273119946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.6 bits)