RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy375
         (93 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.4 bits (65), Expect = 0.13
 Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 8/88 (9%)

Query: 7   TERNVDAALLSNTYCRSQMHLSEQLAQLHPELTMPMFSEITH-RFQTARPEVRQILLQYL 65
           T R        +    + + L      L P+    +  +    R Q    EV        
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT----- 325

Query: 66  LPWLHNM--ELLDPNVPPANPLSYYQLN 91
            P   ++  E +   +   +   +   +
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCD 353



 Score = 27.5 bits (60), Expect = 0.58
 Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 8/72 (11%)

Query: 16  LSNTYCRSQMHLSEQLAQLHPELTMPMFSEITHRFQTARP--EVRQILLQYLLPWLHNME 73
           L+   C S   + E L +L  ++     S   H          ++  L + L    +   
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 74  LL------DPNV 79
           LL      +   
Sbjct: 247 LLVLLNVQNAKA 258


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.2 bits (65), Expect = 0.16
 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 40/86 (46%)

Query: 43  FSEITHRFQTARPEVRQIL------LQYLLP-----------------WLHNMELLDPNV 79
           F E+   +QT    V  ++      L  L+                  WL N     P+ 
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN-----PSN 224

Query: 80  PPAN------PLSY-----YQL-NFL 93
            P        P+S       QL +++
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYV 250


>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
           structural genomics; 2.20A {Pyrococcus horikoshii}
          Length = 253

 Score = 25.4 bits (55), Expect = 3.3
 Identities = 6/37 (16%), Positives = 16/37 (43%)

Query: 29  EQLAQLHPELTMPMFSEITHRFQTARPEVRQILLQYL 65
           E++A+ +P L   +  +      +   E +   L ++
Sbjct: 132 EEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFI 168


>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
           hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
          Length = 279

 Score = 24.9 bits (55), Expect = 4.7
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)

Query: 29  EQLAQLHPELTMPMFSEITHRFQTARPEVRQILL 62
           + L+  +P L M     +TH  +       +ILL
Sbjct: 205 DSLSDSYPTLAMIY---VTHFIEEITANFSKILL 235


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0505    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,370,923
Number of extensions: 64185
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 10
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.0 bits)