RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy375
         (93 letters)



>d1xoca1 c.94.1.1 (A:17-520) Oligo-peptide binding protein (OPPA)
           {Bacillus subtilis [TaxId: 1423]}
          Length = 504

 Score = 24.3 bits (51), Expect = 3.0
 Identities = 10/83 (12%), Positives = 22/83 (26%)

Query: 1   MFRMNSTERNVDAALLSNTYCRSQMHLSEQLAQLHPELTMPMFSEITHRFQTARPEVRQI 60
                    +++   +  T  ++    +         L+                +VRQ 
Sbjct: 211 AAEAQLQAGDINFFNVPATDYKTAEKFNNLKIVTDLALSYVYIGWNEKNELFKDKKVRQA 270

Query: 61  LLQYLLPWLHNMELLDPNVPPAN 83
           L   L       ++LD +   A 
Sbjct: 271 LTTALDRESIVSQVLDGDGEVAY 293


>d2al6a3 d.15.1.4 (A:31-130) Focal adhesion kinase 1 {Chicken
          (Gallus gallus) [TaxId: 9031]}
          Length = 100

 Score = 23.6 bits (51), Expect = 3.3
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 21 CRSQMHLSEQLAQLHPELTMPMFSEITHRFQTARPE 56
           R     SE++  LH ++ +   S +  +F+ A P 
Sbjct: 55 LRLSHLQSEEVHWLHLDMGV---SNVREKFELAHPP 87


>d1m0wa2 d.142.1.6 (A:6-210,A:324-491) Eukaryotic glutathione
           synthetase ATP-binding domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 373

 Score = 24.0 bits (52), Expect = 3.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 18  NTYCRSQMHLSEQLAQLHPEL 38
           NT   S   LSE++ +LH  L
Sbjct: 143 NTVSVSFAGLSEKVDRLHSYL 163


>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
          {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 386

 Score = 23.7 bits (50), Expect = 4.3
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 36 PELTMPMFSEITHRFQTAR--PEVRQILLQYLLPW 68
          PE  +    E+   ++  +   E  + L  YL  W
Sbjct: 12 PETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTW 46


>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima
           [TaxId: 2336]}
          Length = 247

 Score = 23.2 bits (49), Expect = 7.2
 Identities = 9/53 (16%), Positives = 20/53 (37%)

Query: 36  PELTMPMFSEITHRFQTARPEVRQILLQYLLPWLHNMELLDPNVPPANPLSYY 88
           P + +   +  +  F+ A   +   L ++    L    +L+ NVP      + 
Sbjct: 122 PSIAISSANYESPDFEGAARFLIDFLKEFDFSLLDPFTMLNINVPAGEIKGWR 174


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0618    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 335,935
Number of extensions: 12801
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 9
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)